Citrus Sinensis ID: 024744

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIAS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEEEEcccccccHHHHHHHHccccccEEEEEEccccccccccHHHHHccccccccccEEEEcccEEEEEEccHHHHHHHHHHHccccccEEEEEcccccccHHHHHHHcccccccccccccEEEEEEEEEEccccccccccccHHHHHHHHHHHcccccEEEEEEccccccHHHccccccccccHHcccccHHHHccccccccccccEEEEEEEccccccHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEccccccccccccccccccEEEEEEEccccccHHHHHHHHHHccccccEEEEcccccccccccHHHHHcccccccHHHHHHHccccEEEcHHHHHHHHHHHHHHHcccccEEEEEEccccccccHHEEEEcHHHHHHHcccccEEEEEEEEEccccccHHHcHHHHHHHHHHHHHHccccEEEEEccccccHHHHHccccccHHHHHHcHHHHHHHccccccccHHcccEEEEEEccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
medeeedpplavridetthefsnshenddvsvGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLettglanpaplasvLWLDDQLESAVRLDSIITDVVILNKvdlvspersgdslDELEKEIHEINSLAHVIRSVRCQvdlsevlncraydaTHVTRLEGLleehqykssqnlhdnnvrtlsiceplavNLDKVILQIAS
Flexible Loop (DISEMBL)
medeeedpplavRIDETThefsnshenddvsVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLEttglanpapLASVLWLDDQLESAVRLdsiitdvvilnkvdlvspersgdSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSIceplavnldKVILQIAS
Low Complexity Region (SEG)
MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIAS
Disordered region (IsUnstruct)
*****************************VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLV*************KEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI**
Disordered Region (DISOPRED)
***EEEDPPLA**********************VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTR*******************NVRTLSICEPLAVNLDKVILQIAS
Disordered Region (DISEMBL)
*********LAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIAS
Disordered Region (DISPRO)
******DPPLAVRID*************DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIAS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
Q99MB4	394	COBW domain-containing pr	yes	no	0.908	0.606	0.388	1e-44
Q8VEH6	393	COBW domain-containing pr	yes	no	0.775	0.519	0.424	4e-44
Q9BRT8	395	COBW domain-containing pr	yes	no	0.863	0.574	0.390	7e-44
Q8IUF1	395	COBW domain-containing pr	yes	no	0.863	0.574	0.386	2e-43
Q5JTY5	395	COBW domain-containing pr	yes	no	0.863	0.574	0.382	5e-42
O74310	411	COBW domain-containing pr	yes	no	0.711	0.454	0.419	9e-42
Q4V339	395	COBW domain-containing pr	yes	no	0.863	0.574	0.378	1e-41
Q5RIA9	395	COBW domain-containing pr	yes	no	0.741	0.493	0.408	2e-41
P53729	429	Uncharacterized protein Y	yes	no	0.768	0.470	0.325	3e-32
Q869Q0	475	COBW domain-containing pr	no	no	0.714	0.395	0.308	4e-25

>sp|Q99MB4|CBWD1_RAT COBW domain-containing protein 1 OS=Rattus norvegicus GN=Cbwd1 PE=2 SV=2

 Score =  180 bits (456), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 108/278 (38%), Positives = 161/278 (57%), Gaps = 39/278 (14%)

Query: 2   EDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRI 61
           E+  ED P  V I ET H+    + +  + + VT++TG+LGAGK+TL+NYIL  +H ++I
Sbjct: 12  EEYAEDCPELVPI-ETKHQEKEENLDFIIKIPVTIVTGYLGAGKTTLLNYILTEQHNRKI 70

Query: 62  AVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERL 121
           AVILNEFGE   VE+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + 
Sbjct: 71  AVILNEFGEGSAVEKSLAV-SQGGELYEEWLELRNGCLCCSVKDNGLKAIENLMQKKGKF 129

Query: 122 DHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT----------------------- 158
           D+ILLETTGLA+P  +AS+ W+D +L S + LD IIT                       
Sbjct: 130 DYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVNEA 189

Query: 159 -------DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCR 211
                  D++++NK DLVS E     L++L   I  IN L  V+ + R +  LS +L+  
Sbjct: 190 TRQVALADMILINKTDLVSEEE----LNKLRTTIRSINGLGKVLETQRSRTHLSNILDLH 245

Query: 212 AYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEP 249
           AYD      L+  L   Q+ S+    D ++ T++   P
Sbjct: 246 AYDTLSGISLQKKL---QHVSTAPHLDQSIVTVTFDVP 280

Rattus norvegicus (taxid: 10116)

>sp|Q8VEH6|CBWD1_MOUSE COBW domain-containing protein 1 OS=Mus musculus GN=Cbwd1 PE=2 SV=1

 Score =  178 bits (451), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 104/245 (42%), Positives = 145/245 (59%), Gaps = 41/245 (16%)

Query: 2   EDEEEDPPLAVRIDETTHEFSNSHENDDV--SVGVTVITGFLGAGKSTLVNYILNGKHGK 59
           E+  ED P  V I+    E     EN D    + VT++TG+LGAGK+TL+NYIL  +H +
Sbjct: 12  EEYAEDCPELVPIETKNQE----EENLDFITKIPVTIVTGYLGAGKTTLLNYILTEQHNR 67

Query: 60  RIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE 119
           +IAVILNEFGE   VE+++    +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K 
Sbjct: 68  KIAVILNEFGEGSAVEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKG 126

Query: 120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT--------------------- 158
           + D+ILLETTGLA+P  +AS+ W+D +L S + LD IIT                     
Sbjct: 127 KFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIITVVDSKYGLKHLTEEKPDGLVN 186

Query: 159 ---------DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLN 209
                    D++++NK DLVS E     L+ L   I  IN L  V+ + R +V LS +L+
Sbjct: 187 EATRQVALADMILINKTDLVSEEE----LNNLRTTIRSINGLGKVLETQRSRVHLSNILD 242

Query: 210 CRAYD 214
             AYD
Sbjct: 243 LHAYD 247

Mus musculus (taxid: 10090)

>sp|Q9BRT8|CBWD1_HUMAN COBW domain-containing protein 1 OS=Homo sapiens GN=CBWD1 PE=1 SV=1

 Score =  177 bits (449), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 103/264 (39%), Positives = 151/264 (57%), Gaps = 37/264 (14%)

Query: 16  ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
           ETT             + VT+ITG+LGAGK+TL+NYIL  +H KR+AVILNEFGE   +E
Sbjct: 26  ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALE 85

Query: 76  RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
           +++    +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K + D+ILLETTGLA+P 
Sbjct: 86  KSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKGKFDYILLETTGLADPG 144

Query: 136 PLASVLWLDDQLESAVRLDSIIT------------------------------DVVILNK 165
            +AS+ W+D +L S + LD IIT                              D +++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADAILINK 204

Query: 166 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 225
            DLV PE   + + +L   I  IN L  ++ + R +VDLS VL+  A+D+     L+  L
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKL 260

Query: 226 EEHQYKSSQNLHDNNVRTLSICEP 249
           +      +Q   D ++ T++   P
Sbjct: 261 Q--HVPGTQPHLDQSIVTITFEVP 282

Homo sapiens (taxid: 9606)

>sp|Q8IUF1|CBWD2_HUMAN COBW domain-containing protein 2 OS=Homo sapiens GN=CBWD2 PE=1 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/264 (38%), Positives = 151/264 (57%), Gaps = 37/264 (14%)

Query: 16  ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
           ETT             + VT+ITG+LGAGK+TL+NYIL  +H KR+AVILNEFGE   +E
Sbjct: 26  ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNEFGEGSALE 85

Query: 76  RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
           +++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D+ILLETTGLA+P 
Sbjct: 86  KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDYILLETTGLADPG 144

Query: 136 PLASVLWLDDQLESAVRLDSIIT------------------------------DVVILNK 165
            +AS+ W+D +L S + LD IIT                              D +++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLAEEKPDGLINEATRQVALADAILINK 204

Query: 166 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 225
            DLV PE   + + +L   I  IN L  ++ + R +VDLS VL+  A+D+     L+  L
Sbjct: 205 TDLV-PE---EDVKKLRATIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKL 260

Query: 226 EEHQYKSSQNLHDNNVRTLSICEP 249
           +      +Q   D ++ T++   P
Sbjct: 261 Q--HVPGTQPHLDQSIVTITFEVP 282

Homo sapiens (taxid: 9606)

>sp|Q5JTY5|CBWD3_HUMAN COBW domain-containing protein 3 OS=Homo sapiens GN=CBWD3 PE=2 SV=1

 Score =  171 bits (433), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 101/264 (38%), Positives = 150/264 (56%), Gaps = 37/264 (14%)

Query: 16  ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
           ETT             + VT+ITG+LGAGK+TL+NYIL  +H KR+AVILNE GE   +E
Sbjct: 26  ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85

Query: 76  RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
           +++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P 
Sbjct: 86  KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144

Query: 136 PLASVLWLDDQLESAVRLDSIIT------------------------------DVVILNK 165
            +AS+ W+D +L S + LD IIT                              D++++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204

Query: 166 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 225
            DLV PE   + + +L   I  IN L  ++ + R +VDLS VL+  A+D+     L+  L
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKL 260

Query: 226 EEHQYKSSQNLHDNNVRTLSICEP 249
           +      +Q   D ++ T++   P
Sbjct: 261 Q--HVPGTQPHLDQSIVTITFEVP 282

Homo sapiens (taxid: 9606)

>sp|O74310|YOG5_SCHPO COBW domain-containing protein C15D4.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.05 PE=3 SV=1

 Score =  170 bits (431), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 91/217 (41%), Positives = 139/217 (64%), Gaps = 30/217 (13%)

Query: 32  VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
           V VT++TGFLGAGK++L+  IL  ++GKR+AV++NE G+   +ER+++ +  G  L EEW
Sbjct: 61  VPVTILTGFLGAGKTSLLRSILENRNGKRVAVLMNEVGDSGDLERSLMEDVGGEELYEEW 120

Query: 92  VELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAV 151
           V L+NGC+CCTVK + ++ALE+++++K R D+I++ETTG+ANP PLA   WLDD L+S V
Sbjct: 121 VALSNGCMCCTVKDNGIKALEKIMRQKGRFDNIVIETTGIANPGPLAQTFWLDDALKSDV 180

Query: 152 RLDSIIT-------------------------DVVILNKVDLVSPERSGDSLDELEKEIH 186
           +LD I+T                         D +ILNK DL+S E    +L  + + I 
Sbjct: 181 KLDGIVTVIDCKNIDNILKDESDIGFIQISHADCLILNKTDLISSE----ALSVVRQTIL 236

Query: 187 EINSLAHVIRSVRCQV-DLSEVLNCRAYDATHVTRLE 222
           +IN LA +I +   ++ D+SE+L+  AY   + + LE
Sbjct: 237 KINCLAKIIETTYGRLDDISEILDLDAYGNENTSNLE 273

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4V339|CBWD6_HUMAN COBW domain-containing protein 6 OS=Homo sapiens GN=CBWD6 PE=2 SV=1

 Score =  170 bits (430), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 150/264 (56%), Gaps = 37/264 (14%)

Query: 16  ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
           ETT             + VT+ITG+LGAGK+TL+NYIL  +H KR+AVILNE GE   +E
Sbjct: 26  ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85

Query: 76  RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
           +++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P 
Sbjct: 86  KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144

Query: 136 PLASVLWLDDQLESAVRLDSIIT------------------------------DVVILNK 165
            +AS+ W+D +L S + LD IIT                              D++++NK
Sbjct: 145 AVASMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204

Query: 166 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL 225
            DLV PE   + + +L   +  IN L  ++ + R +VDLS VL+  A+D+     L+  L
Sbjct: 205 TDLV-PE---EDVKKLRTTLRSINGLGQILETQRSRVDLSNVLDLHAFDSLSGISLQKKL 260

Query: 226 EEHQYKSSQNLHDNNVRTLSICEP 249
           +      +Q   D ++ T++   P
Sbjct: 261 Q--HVPGTQPHLDQSIVTITFDVP 282

Homo sapiens (taxid: 9606)

>sp|Q5RIA9|CBWD5_HUMAN COBW domain-containing protein 5 OS=Homo sapiens GN=CBWD5 PE=2 SV=1

 Score =  169 bits (429), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/230 (40%), Positives = 136/230 (59%), Gaps = 35/230 (15%)

Query: 16  ETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE 75
           ETT             + VT+ITG+LGAGK+TL+NYIL  +H KR+AVILNE GE   +E
Sbjct: 26  ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQHSKRVAVILNESGEGSALE 85

Query: 76  RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPA 135
           +++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K + D ILLETTGLA+P 
Sbjct: 86  KSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQKKGKFDDILLETTGLADPG 144

Query: 136 PLASVLWLDDQLESAVRLDSIIT------------------------------DVVILNK 165
            + S+ W+D +L S + LD IIT                              D++++NK
Sbjct: 145 AVTSMFWVDAELGSDIYLDGIITIVDSKYGLKHLTEEKPDGLINEATRQVALADIILINK 204

Query: 166 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDA 215
            DLV PE   + + +L   I  IN L  ++ + R +VDLS VL+  A+D+
Sbjct: 205 TDLV-PE---EDVKKLRTTIRSINGLGQILETQRSRVDLSNVLDLHAFDS 250

Homo sapiens (taxid: 9606)

>sp|P53729|YN8H_YEAST Uncharacterized protein YNR029C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNR029C PE=1 SV=1

 Score =  139 bits (349), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/249 (32%), Positives = 138/249 (55%), Gaps = 47/249 (18%)

Query: 13  RIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI 72
           +++ T+   ++ HE   + V  ++ITG+LG+GKSTL+  I      K+IAVILNEFG+  
Sbjct: 54  QVENTSAGATDVHEKKRIPV--SIITGYLGSGKSTLLEKIALKGADKKIAVILNEFGDSS 111

Query: 73  GVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE-RLDHILLETTGL 131
            +E+AM  +  G    +EW++L NGC+CC++K+  V+A+E +V+R   ++D+ILLET+G+
Sbjct: 112 EIEKAMTIK-NGSNSYQEWLDLGNGCLCCSLKNIGVKAIEDMVERSPGKIDYILLETSGI 170

Query: 132 ANPAPLASVLWLDDQLESAVRLDSIIT--------------------------------- 158
           A+PAP+A + W D+ L S+V +D IIT                                 
Sbjct: 171 ADPAPIAKMFWQDEGLNSSVYIDGIITVLDCEHILKCLDDISIDAHWHGDKVGLEGNLTI 230

Query: 159 --------DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 210
                   D +I+NK D +  E S + + +L++ + EINS+A +  +      +  +L+ 
Sbjct: 231 AHFQLAMADRIIMNKYDTI--EHSPEMVKQLKERVREINSIAPMFFTKYSDTPIQNLLDI 288

Query: 211 RAYDATHVT 219
            AYD+  ++
Sbjct: 289 HAYDSVRIS 297

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q869Q0|Y4527_DICDI COBW domain-containing protein DDB_G0274527 OS=Dictyostelium discoideum GN=DDB_G0274527 PE=3 SV=1

 Score =  115 bits (287), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 62/250 (24%)

Query: 34  VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGG-------- 85
           V+V++GFLG+GK+TL+NYILN  HG +IAVI+N+   E+ ++  +I E E          
Sbjct: 45  VSVLSGFLGSGKTTLLNYILNSNHGLKIAVIVNDMS-EVNIDSKLILENEFKITRTKATE 103

Query: 86  ALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLD- 144
             VE  VE++NGCICCT++  L+  + +L + K R D++++E++G++ P P+A     + 
Sbjct: 104 KQVEAVVEMSNGCICCTMREDLLVEVTKLAKEK-RFDYLIIESSGISEPLPIAETFTFEI 162

Query: 145 ----DQLESAVRLDSIIT------------------------------------------ 158
               + L+   +LD+++T                                          
Sbjct: 163 DGSIENLKDYTKLDTMVTVVDCSTWLEQYQSGESLKDKDMQATDQDERSLVDLLLDQVEF 222

Query: 159 -DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH 217
            +V++LNK DLVS ER    +  +E  I  IN  A ++RS    V L E+LN   +D   
Sbjct: 223 SNVILLNKCDLVSEER----VKTIEGLIKHINPEARLLRSTNSVVPLKEILNTGLFDFKK 278

Query: 218 VTRLEGLLEE 227
            +   G L+E
Sbjct: 279 ASEHPGWLKE 288

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
147802500	601	hypothetical protein VITISV_040646 [Viti	0.980	0.429	0.812	1e-115
297738062	621	unnamed protein product [Vitis vinifera]	0.980	0.415	0.728	1e-111
225423525	368	PREDICTED: COBW domain-containing protei	0.980	0.701	0.728	1e-110
62321492	364	hypothetical protein [Arabidopsis thalia	0.977	0.706	0.666	1e-101
145336129	374	Cobalamin biosynthesis CobW-like protein	0.977	0.687	0.666	1e-101
297845544	374	hypothetical protein ARALYDRAFT_472757 [	0.977	0.687	0.656	1e-100
224101437	375	predicted protein [Populus trichocarpa]	0.992	0.696	0.672	1e-99
449523868	367	PREDICTED: COBW domain-containing protei	0.961	0.689	0.669	9e-97
255542064	413	protein with unknown function [Ricinus c	0.958	0.610	0.677	1e-96
449452867	374	PREDICTED: COBW domain-containing protei	0.961	0.676	0.652	2e-95

>gi|147802500|emb|CAN64163.1| hypothetical protein VITISV_040646 [Vitis vinifera]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/261 (81%), Positives = 235/261 (90%), Gaps = 3/261 (1%)

Query: 1   MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
           ME+E+EDPPLAV I+++T   S   +NDDVSVGVTVITG+LGAGKST VN+ILN +HGKR
Sbjct: 1   MEEEDEDPPLAVEINKSTPPQS---QNDDVSVGVTVITGYLGAGKSTXVNFILNSQHGKR 57

Query: 61  IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
           IAVILNEFGEEIGVERAMINEG+ GALVEEWVELANGCICCTVKHSLVQALEQLVQ KER
Sbjct: 58  IAVILNEFGEEIGVERAMINEGDNGALVEEWVELANGCICCTVKHSLVQALEQLVQMKER 117

Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDE 180
           LDHILLETTGLANPAPLASVLWLDDQLES+VRLDSIITDVVILNKVDLVSPE SG  L+E
Sbjct: 118 LDHILLETTGLANPAPLASVLWLDDQLESSVRLDSIITDVVILNKVDLVSPEESGGVLEE 177

Query: 181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNN 240
           LEKEIH INSLA++I SVRCQVDLS++L+CRAYDATH T LE LLEE+Q  SS++LHD+N
Sbjct: 178 LEKEIHNINSLANIIHSVRCQVDLSKILDCRAYDATHATHLEALLEENQSLSSKDLHDSN 237

Query: 241 VRTLSICEPLAVNLDKVILQI 261
           VRTL I EPL V+LDKV L +
Sbjct: 238 VRTLCISEPLPVDLDKVRLWL 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738062|emb|CBI27263.3| unnamed protein product [Vitis vinifera]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/291 (72%), Positives = 235/291 (80%), Gaps = 33/291 (11%)

Query: 1   MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
           ME+E+EDPPLAV I+++T   S   +NDDVSVGVTVITG+LGAGKST VN+ILN +HGKR
Sbjct: 1   MEEEDEDPPLAVEINKSTPPQS---QNDDVSVGVTVITGYLGAGKSTFVNFILNSQHGKR 57

Query: 61  IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
           IAVILNEFGEEIGVERAMINEG+ GALVEEWVELANGCICCTVKHSLVQALEQLVQ KER
Sbjct: 58  IAVILNEFGEEIGVERAMINEGDNGALVEEWVELANGCICCTVKHSLVQALEQLVQMKER 117

Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT---------------------- 158
           LDHILLETTGLANPAPLASVLWLDDQLES+VRLDSIIT                      
Sbjct: 118 LDHILLETTGLANPAPLASVLWLDDQLESSVRLDSIITVVDAKNLRFQLNSHHGSSSFPE 177

Query: 159 --------DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 210
                   DVVILNKVDLVSPE SG  L+ELEKEIH INSLA++I SVRCQVDLS++L+C
Sbjct: 178 AFLQIAFADVVILNKVDLVSPEESGGVLEELEKEIHNINSLANIIHSVRCQVDLSKILDC 237

Query: 211 RAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 261
           RAYDATH T LE LLEE+Q  SS++LHD+NVRTL I EPL V+LDKV L +
Sbjct: 238 RAYDATHATHLEALLEENQSLSSKDLHDSNVRTLCISEPLPVDLDKVRLWL 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423525|ref|XP_002274691.1| PREDICTED: COBW domain-containing protein 1-like [Vitis vinifera]

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/291 (72%), Positives = 235/291 (80%), Gaps = 33/291 (11%)

Query: 1   MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
           ME+E+EDPPLAV I+++T   S   +NDDVSVGVTVITG+LGAGKST VN+ILN +HGKR
Sbjct: 1   MEEEDEDPPLAVEINKSTPPQS---QNDDVSVGVTVITGYLGAGKSTFVNFILNSQHGKR 57

Query: 61  IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
           IAVILNEFGEEIGVERAMINEG+ GALVEEWVELANGCICCTVKHSLVQALEQLVQ KER
Sbjct: 58  IAVILNEFGEEIGVERAMINEGDNGALVEEWVELANGCICCTVKHSLVQALEQLVQMKER 117

Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT---------------------- 158
           LDHILLETTGLANPAPLASVLWLDDQLES+VRLDSIIT                      
Sbjct: 118 LDHILLETTGLANPAPLASVLWLDDQLESSVRLDSIITVVDAKNLRFQLNSHHGSSSFPE 177

Query: 159 --------DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 210
                   DVVILNKVDLVSPE SG  L+ELEKEIH INSLA++I SVRCQVDLS++L+C
Sbjct: 178 AFLQIAFADVVILNKVDLVSPEESGGVLEELEKEIHNINSLANIIHSVRCQVDLSKILDC 237

Query: 211 RAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 261
           RAYDATH T LE LLEE+Q  SS++LHD+NVRTL I EPL V+LDKV L +
Sbjct: 238 RAYDATHATHLEALLEENQSLSSKDLHDSNVRTLCISEPLPVDLDKVRLWL 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62321492|dbj|BAD94941.1| hypothetical protein [Arabidopsis thaliana]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/291 (66%), Positives = 224/291 (76%), Gaps = 34/291 (11%)

Query: 1   MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
           MED++E+PP+AV+I            +D VSVGV+VITG+LGAGKSTLVNYILNGKHGKR
Sbjct: 1   MEDDDEEPPMAVQIHPDVSVGKVHSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKR 60

Query: 61  IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
           IAVILNEFGEEIGVERAMINEGE GA+VEEWVELANGC+CCTVKHSLVQALEQLVQRK+R
Sbjct: 61  IAVILNEFGEEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRKDR 120

Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT---------------------- 158
           LDHILLETTGLANPAPLAS+LWLDDQLES V+LD I+T                      
Sbjct: 121 LDHILLETTGLANPAPLASILWLDDQLESEVKLDCIVTVVDAKNLRFQLNERRDSSSFPE 180

Query: 159 --------DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 210
                   D +I+NKVDL+S E S    DELEKEIH INSLA+VIRSVRCQVDLS +LNC
Sbjct: 181 AFNQIAFADTIIMNKVDLISQEES----DELEKEIHSINSLANVIRSVRCQVDLSNILNC 236

Query: 211 RAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 261
           +AYD+THV+RLE LLE ++  ++ +LHD+ VRTL I EP  +NLDKV L +
Sbjct: 237 QAYDSTHVSRLESLLEANKSLTTTDLHDSGVRTLCISEPQPINLDKVRLWL 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145336129|ref|NP_173974.3| Cobalamin biosynthesis CobW-like protein [Arabidopsis thaliana] gi|63147374|gb|AAY34160.1| At1g26520 [Arabidopsis thaliana] gi|332192579|gb|AEE30700.1| Cobalamin biosynthesis CobW-like protein [Arabidopsis thaliana]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/291 (66%), Positives = 224/291 (76%), Gaps = 34/291 (11%)

Query: 1   MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
           MED++E+PP+AV+I            +D VSVGV+VITG+LGAGKSTLVNYILNGKHGKR
Sbjct: 11  MEDDDEEPPMAVQIHPDVSVGKVHSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKR 70

Query: 61  IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
           IAVILNEFGEEIGVERAMINEGE GA+VEEWVELANGC+CCTVKHSLVQALEQLVQRK+R
Sbjct: 71  IAVILNEFGEEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRKDR 130

Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT---------------------- 158
           LDHILLETTGLANPAPLAS+LWLDDQLES V+LD I+T                      
Sbjct: 131 LDHILLETTGLANPAPLASILWLDDQLESEVKLDCIVTVVDAKNLRFQLNERRDSSSFPE 190

Query: 159 --------DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 210
                   D +I+NKVDL+S E S    DELEKEIH INSLA+VIRSVRCQVDLS +LNC
Sbjct: 191 AFNQIAFADTIIMNKVDLISQEES----DELEKEIHSINSLANVIRSVRCQVDLSNILNC 246

Query: 211 RAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 261
           +AYD+THV+RLE LLE ++  ++ +LHD+ VRTL I EP  +NLDKV L +
Sbjct: 247 QAYDSTHVSRLESLLEANKSLTTTDLHDSGVRTLCISEPQPINLDKVRLWL 297

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845544|ref|XP_002890653.1| hypothetical protein ARALYDRAFT_472757 [Arabidopsis lyrata subsp. lyrata] gi|297336495|gb|EFH66912.1| hypothetical protein ARALYDRAFT_472757 [Arabidopsis lyrata subsp. lyrata]

 Score =  371 bits (953), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/291 (65%), Positives = 223/291 (76%), Gaps = 34/291 (11%)

Query: 1   MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
           MED++E+PP+A++I            +D VSVGV+VITG+LGAGKSTLVNYILNGKHGKR
Sbjct: 11  MEDDDEEPPMAIQIQPDVSVRKILSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKR 70

Query: 61  IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
           IAVILNEFGEEIGVERAMINEGE GA+VEEWVELANGC+CCTVKHSLVQALEQLVQRK+R
Sbjct: 71  IAVILNEFGEEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRKDR 130

Query: 121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT---------------------- 158
           LDHILLETTGLANPAPLAS+LWLDDQLES V+LD I+T                      
Sbjct: 131 LDHILLETTGLANPAPLASILWLDDQLESEVKLDCIVTVVDAKNLRFQLNERRDSSSFSE 190

Query: 159 --------DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNC 210
                   D +I+NKVDL+S E S    DELEKEIH INSLA+VIRSVRCQVDLS +LNC
Sbjct: 191 AFNQIAFADTIIMNKVDLISQEES----DELEKEIHSINSLANVIRSVRCQVDLSNILNC 246

Query: 211 RAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 261
           +AYD+ HV+RLE LLE ++  ++ +LHD+ +RTL I EP  +NLDKV L +
Sbjct: 247 QAYDSNHVSRLESLLETNKSLTTTDLHDSGIRTLCISEPQPINLDKVRLWL 297

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101437|ref|XP_002312279.1| predicted protein [Populus trichocarpa] gi|222852099|gb|EEE89646.1| predicted protein [Populus trichocarpa]

 Score =  369 bits (946), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 199/296 (67%), Positives = 229/296 (77%), Gaps = 35/296 (11%)

Query: 1   MEDEEEDPPLAVRIDETTH-EFSNSH----ENDDVSVGVTVITGFLGAGKSTLVNYILNG 55
           ME EE+D PLAV ++ET   + S+SH    + +DV VGVTVITG+LG+GKSTLVN+ILN 
Sbjct: 1   MEKEEDDAPLAVELEETVPVKPSSSHSKQPQGEDVPVGVTVITGYLGSGKSTLVNHILNT 60

Query: 56  KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLV 115
           +HGKRIAVILNEFGEEIGVERAMINEGE GALVEEWVELANGC+CCTVKHSLVQALEQLV
Sbjct: 61  QHGKRIAVILNEFGEEIGVERAMINEGEDGALVEEWVELANGCVCCTVKHSLVQALEQLV 120

Query: 116 QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT----------------- 158
           Q KERLDHILLETTGLANPAPLASVLWLDDQLESAV+LDSIIT                 
Sbjct: 121 QMKERLDHILLETTGLANPAPLASVLWLDDQLESAVKLDSIITVVDAKNLHYQLNELQNS 180

Query: 159 -------------DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLS 205
                        DV+ILNKVDLVS   SG++L ELE EIH+INSLA++I SVRCQVDLS
Sbjct: 181 SSFPEASLQIAFADVIILNKVDLVSLGGSGEALKELENEIHKINSLANIIHSVRCQVDLS 240

Query: 206 EVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 261
           ++LNCRAYD+ H   LE LLEE +  S+ +LHD+++RTL ICE   V+LDKV L +
Sbjct: 241 KILNCRAYDSKHFGHLEVLLEESKSLSTSDLHDSSLRTLCICESQKVDLDKVRLWL 296

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449523868|ref|XP_004168945.1| PREDICTED: COBW domain-containing protein 1-like [Cucumis sativus]

 Score =  358 bits (920), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 190/284 (66%), Positives = 215/284 (75%), Gaps = 31/284 (10%)

Query: 4   EEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAV 63
           E+EDPPLAV I ET       HE+D VSVGVTVITG+LGAGKSTLVNY+LN +HGKRIAV
Sbjct: 2   EDEDPPLAVEIGETITAVQQ-HEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60

Query: 64  ILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 123
           ILNEFGEEIG+ERAMINEG+GGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH
Sbjct: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 120

Query: 124 ILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT------------------------- 158
           ILLETTGLANPAPLASVLWLDDQLES+++LDSIIT                         
Sbjct: 121 ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH 180

Query: 159 -----DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 213
                D +ILNKVDLVS +R   +L++LE EI  INSLA +I SVRCQVDLS +L+C +Y
Sbjct: 181 QIVFADTIILNKVDLVSSDRGDGALEDLEYEIRNINSLAKIIHSVRCQVDLSLILDCNSY 240

Query: 214 DATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKV 257
           +A +   LE LL+E    S+Q+LHD  VRTL I E   V+LDKV
Sbjct: 241 NAANTAHLEALLKESCSLSTQDLHDTGVRTLCISEHDKVDLDKV 284

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542064|ref|XP_002512096.1| protein with unknown function [Ricinus communis] gi|223549276|gb|EEF50765.1| protein with unknown function [Ricinus communis]

 Score =  358 bits (920), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 195/288 (67%), Positives = 220/288 (76%), Gaps = 36/288 (12%)

Query: 5   EEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVI 64
           EEDPP+AV I       S     DDVSVGVTVITG+LGAGKSTLVN+ILN +HGKRIAVI
Sbjct: 4   EEDPPVAVEIASE----SERPPTDDVSVGVTVITGYLGAGKSTLVNHILNSQHGKRIAVI 59

Query: 65  LNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE-RLDH 123
           LNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQ KE RLDH
Sbjct: 60  LNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQMKESRLDH 119

Query: 124 ILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT------------------------- 158
           I++ETTGLANPAPLASVLWLDDQLES V+LDSI+T                         
Sbjct: 120 IIIETTGLANPAPLASVLWLDDQLESTVKLDSIVTVVDAKNLPFQLNNHRSSTSFPEAFL 179

Query: 159 -----DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAY 213
                DVVILNKVDLVS E   ++L+ELEKEIH INSLA++I SVRC VDLS++LNC+AY
Sbjct: 180 QIAFADVVILNKVDLVSSE-GPEALEELEKEIHNINSLANIIHSVRCHVDLSKILNCQAY 238

Query: 214 DATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQI 261
           DATH + LE LLEE +  S++++HD  VRT+ ICE   V+LDKV L +
Sbjct: 239 DATHHSHLETLLEESKSLSTRDIHDGGVRTVCICESQQVDLDKVRLWL 286

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452867|ref|XP_004144180.1| PREDICTED: COBW domain-containing protein 1-like [Cucumis sativus]

 Score =  354 bits (909), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 190/291 (65%), Positives = 216/291 (74%), Gaps = 38/291 (13%)

Query: 4   EEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAV 63
           E+EDPPLAV I ET       HE+D VSVGVTVITG+LGAGKSTLVNY+LN +HGKRIAV
Sbjct: 2   EDEDPPLAVEIGETITAVQQ-HEDDGVSVGVTVITGYLGAGKSTLVNYVLNSQHGKRIAV 60

Query: 64  ILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 123
           ILNEFGEEIG+ERAMINEG+GGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH
Sbjct: 61  ILNEFGEEIGIERAMINEGDGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDH 120

Query: 124 ILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT------------------------- 158
           ILLETTGLANPAPLASVLWLDDQLES+++LDSIIT                         
Sbjct: 121 ILLETTGLANPAPLASVLWLDDQLESSIKLDSIITVVDAKNLHFQLNEHRSSSSFPEAFH 180

Query: 159 -----DVVILNKVDLVSPERSGDSLDELEKE-------IHEINSLAHVIRSVRCQVDLSE 206
                D +ILNKVDLVS +R   +L++LE E       I  INSLA +I SVRCQVDLS 
Sbjct: 181 QIVFADTIILNKVDLVSSDRGDGALEDLEYEIRNINSLIRNINSLAKIIHSVRCQVDLSL 240

Query: 207 VLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKV 257
           +L+C +Y+A +   LE LL+E +  S+Q+LHD  VRTL I E   V+LDKV
Sbjct: 241 ILDCNSYNAANTAHLEALLKESRSLSTQDLHDTGVRTLCISEDDKVDLDKV 291

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
TAIR|locus:2197895	374	AT1G26520 "AT1G26520" [Arabido	0.703	0.494	0.724	3.3e-98
RGD|708495	394	Cbwd1 "COBW domain containing	0.942	0.629	0.382	3.7e-39
UNIPROTKB|Q9BRT8	395	CBWD1 "COBW domain-containing	0.680	0.453	0.463	1.6e-38
MGI|MGI:2385089	393	Cbwd1 "COBW domain containing	0.939	0.628	0.382	4.3e-38
UNIPROTKB|Q8IUF1	395	CBWD2 "COBW domain-containing	0.680	0.453	0.452	7e-38
ASPGD|ASPL0000002380	383	AN6191 [Emericella nidulans (t	0.954	0.655	0.367	1.1e-37
DICTYBASE|DDB_G0281589	396	DDB_G0281589 "COBW domain-cont	0.874	0.580	0.365	3e-37
SGD|S000005312	429	YNR029C "Putative protein of u	0.539	0.331	0.445	3.1e-37
UNIPROTKB|Q5JTY5	395	CBWD3 "COBW domain-containing	0.680	0.453	0.452	4.9e-37
UNIPROTKB|Q4V339	395	CBWD6 "COBW domain-containing	0.680	0.453	0.452	4.9e-37

TAIR|locus:2197895 AT1G26520 "AT1G26520" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 3.3e-98, Sum P(2) = 3.3e-98
 Identities = 134/185 (72%), Positives = 151/185 (81%)

Query:     1 MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR 60
             MED++E+PP+AV+I            +D VSVGV+VITG+LGAGKSTLVNYILNGKHGKR
Sbjct:    11 MEDDDEEPPMAVQIHPDVSVGKVHSSSDTVSVGVSVITGYLGAGKSTLVNYILNGKHGKR 70

Query:    61 IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKER 120
             IAVILNEFGEEIGVERAMINEGE GA+VEEWVELANGC+CCTVKHSLVQALEQLVQRK+R
Sbjct:    71 IAVILNEFGEEIGVERAMINEGEEGAIVEEWVELANGCVCCTVKHSLVQALEQLVQRKDR 130

Query:   121 LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDE 180
             LDHILLETTGLANPAPLAS+LWLDDQLES V+LD I+T V   N    ++  R   S  E
Sbjct:   131 LDHILLETTGLANPAPLASILWLDDQLESEVKLDCIVTVVDAKNLRFQLNERRDSSSFPE 190

Query:   181 LEKEI 185
                +I
Sbjct:   191 AFNQI 195

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|708495 Cbwd1 "COBW domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 102/267 (38%), Positives = 164/267 (61%)

Query:     2 EDEEEDPPLAVRIDETTHEFSNSHENDD--VSVGVTVITGFLGAGKSTLVNYILNGKHGK 59
             E+  ED P  V I ET H+     EN D  + + VT++TG+LGAGK+TL+NYIL  +H +
Sbjct:    12 EEYAEDCPELVPI-ETKHQ--EKEENLDFIIKIPVTIVTGYLGAGKTTLLNYILTEQHNR 68

Query:    60 RIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE 119
             +IAVILNEFGE   VE+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+K 
Sbjct:    69 KIAVILNEFGEGSAVEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLKAIENLMQKKG 127

Query:   120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDL--VSPERSGDS 177
             + D+ILLETTGLA+P  +AS+ W+D +L S + LD IIT  V+ +K  L  ++ E+    
Sbjct:   128 KFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIIT--VVDSKYGLKHLTEEKPDGL 185

Query:   178 LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLH 237
             ++E  +++    +LA +I   +  +   E LN        +  L  +LE  + ++    H
Sbjct:   186 VNEATRQV----ALADMILINKTDLVSEEELNKLRTTIRSINGLGKVLETQRSRT----H 237

Query:   238 DNNVRTLSICEPLA-VNLDKVILQIAS 263
              +N+  L   + L+ ++L K +  +++
Sbjct:   238 LSNILDLHAYDTLSGISLQKKLQHVST 264

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q9BRT8 CBWD1 "COBW domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 88/190 (46%), Positives = 127/190 (66%)

Query:     3 DEEEDP-----PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKH 57
             DEEEDP     P  V I ETT             + VT+ITG+LGAGK+TL+NYIL  +H
Sbjct:     9 DEEEDPAEEDCPELVPI-ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQH 67

Query:    58 GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR 117
              KR+AVILNEFGE   +E+++    +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+
Sbjct:    68 SKRVAVILNEFGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQK 126

Query:   118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDL--VSPERSG 175
             K + D+ILLETTGLA+P  +AS+ W+D +L S + LD IIT  ++ +K  L  ++ E+  
Sbjct:   127 KGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIIT--IVDSKYGLKHLTEEKPD 184

Query:   176 DSLDELEKEI 185
               ++E  +++
Sbjct:   185 GLINEATRQV 194

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:2385089 Cbwd1 "COBW domain containing 1" [Mus musculus (taxid:10090)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 102/267 (38%), Positives = 164/267 (61%)

Query:     2 EDEEEDPPLAVRIDETTHEFSNSHENDD--VSVGVTVITGFLGAGKSTLVNYILNGKHGK 59
             E+  ED P  V I+    E     EN D    + VT++TG+LGAGK+TL+NYIL  +H +
Sbjct:    12 EEYAEDCPELVPIETKNQE----EENLDFITKIPVTIVTGYLGAGKTTLLNYILTEQHNR 67

Query:    60 RIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE 119
             +IAVILNEFGE   VE+++    +GG L EEW+EL NGC+CC+VK S ++A+E L+Q+K 
Sbjct:    68 KIAVILNEFGEGSAVEKSLA-VSQGGELYEEWLELRNGCLCCSVKDSGLRAIENLMQKKG 126

Query:   120 RLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDL--VSPERSGDS 177
             + D+ILLETTGLA+P  +AS+ W+D +L S + LD IIT  V+ +K  L  ++ E+    
Sbjct:   127 KFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIIT--VVDSKYGLKHLTEEKPDGL 184

Query:   178 LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLH 237
             ++E  +++    +LA +I   +  +   E LN      T +  + GL +  + + S+ +H
Sbjct:   185 VNEATRQV----ALADMILINKTDLVSEEELNNLR---TTIRSINGLGKVLETQRSR-VH 236

Query:   238 DNNVRTLSICEPLA-VNLDKVILQIAS 263
              +N+  L   + L+ ++L K +  +++
Sbjct:   237 LSNILDLHAYDILSGISLQKKLQHVST 263

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IUF1 CBWD2 "COBW domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 86/190 (45%), Positives = 127/190 (66%)

Query:     3 DEEEDP-----PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKH 57
             DEEEDP     P  V + ETT             + VT+ITG+LGAGK+TL+NYIL  +H
Sbjct:     9 DEEEDPAEEDCPELVPM-ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQH 67

Query:    58 GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR 117
              KR+AVILNEFGE   +E+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+
Sbjct:    68 SKRVAVILNEFGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQK 126

Query:   118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDL--VSPERSG 175
             K + D+ILLETTGLA+P  +AS+ W+D +L S + LD IIT  ++ +K  L  ++ E+  
Sbjct:   127 KGKFDYILLETTGLADPGAVASMFWVDAELGSDIYLDGIIT--IVDSKYGLKHLAEEKPD 184

Query:   176 DSLDELEKEI 185
               ++E  +++
Sbjct:   185 GLINEATRQV 194

GO:0005524 "ATP binding" evidence=IEA

ASPGD|ASPL0000002380 AN6191 [Emericella nidulans (taxid:162425)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 97/264 (36%), Positives = 156/264 (59%)

Query:     1 MEDEEEDPPLA--VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHG 58
             MED++  P L    ++ ++  + S++       V +T++TG+LGAGK+TL+NYIL+ KHG
Sbjct:     1 MEDDDAPPDLVDVSQLPKSELQSSSAELPPQQRVPITLVTGYLGAGKTTLLNYILSEKHG 60

Query:    59 KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRK 118
             K+IAVI+NEFG+   +E+ M    + G  V EW+E+ NGCICC+VK S V A+E L++R+
Sbjct:    61 KKIAVIMNEFGDSTDIEKPM-TVNQDGQEVTEWLEVGNGCICCSVKDSGVMAIESLMERR 119

Query:   119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVV---ILNKVDLVSPERSG 175
                D+ILLETTGLA+P  +A + W+DD L S++ LD I+T V    IL+ +D  +PE + 
Sbjct:   120 GTFDYILLETTGLADPGNIAPIFWVDDNLGSSIYLDGIVTLVDAKNILHLLDEPTPEETV 179

Query:   176 DSLDELEKEIHEINSLAH---VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE-HQYK 231
                +  +   H+ +  AH   V+     Q+  ++V+     D      LE + +      
Sbjct:   180 AVENSKDGSDHD-HDHAHSGPVLSMAHMQISHADVIILNKTDLVTAEELEHVRDRVTAIN 238

Query:   232 SSQNLH-DNNVRTLSICEPLAVNL 254
             S+  +H  ++ RT  I E + ++L
Sbjct:   239 SAAKIHVTDHSRTPQI-EGVVLDL 261

GO:0008150 "biological_process" evidence=ND

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

DICTYBASE|DDB_G0281589 DDB_G0281589 "COBW domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 91/249 (36%), Positives = 148/249 (59%)

Query:    20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMI 79
             E +NS+ N  V V  T+ITGFLG+GK+T +NYILN  HGK+IAVI NE+G+ IG+E AMI
Sbjct:     3 EVTNSNINKKVPV--TLITGFLGSGKTTFLNYILNENHGKKIAVIQNEYGQSIGIETAMI 60

Query:    80 NEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLAS 139
              +  G   ++EW+E  NGCICCTVK   +Q++E L++R ++ D+IL+E+TG+ +P  +++
Sbjct:    61 VDSNGEK-IQEWLEFPNGCICCTVKDDFLQSIEDLLKRSDKFDYILIESTGMGDPGQISA 119

Query:   140 VLWLDDQLESAVRLDSIITDV--------VILNKVDLVSPERSGDSLDELEKEIHEINSL 191
              LW+D++LES +  DSIIT V        +  +K++  +   +   +D+ + EIH  + +
Sbjct:   120 SLWVDEELESPIYFDSIITLVDSKHIEKHIEKSKLNSNANNNNNKKVDDEDIEIHGTD-I 178

Query:   192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE--HQYKSSQNLHDNNVRTLSICEP 249
              +    V  Q+  ++++     D    + L   ++    + KS      N +  +   E 
Sbjct:   179 KYYSTEVERQIAFADIILLNKIDLLDQSNLNNEIKTITERIKSI-----NPIAKIITTER 233

Query:   250 LAVNLDKVI 258
               V LDKV+
Sbjct:   234 SVVPLDKVL 242

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

SGD|S000005312 YNR029C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 324 (119.1 bits), Expect = 3.1e-37, Sum P(2) = 3.1e-37
 Identities = 66/148 (44%), Positives = 105/148 (70%)

Query:    13 RIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYI-LNGKHGKRIAVILNEFGEE 71
             +++ T+   ++ HE   + V  ++ITG+LG+GKSTL+  I L G   K+IAVILNEFG+ 
Sbjct:    54 QVENTSAGATDVHEKKRIPV--SIITGYLGSGKSTLLEKIALKGAD-KKIAVILNEFGDS 110

Query:    72 IGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQRKE-RLDHILLETTG 130
               +E+AM  +  G    +EW++L NGC+CC++K+  V+A+E +V+R   ++D+ILLET+G
Sbjct:   111 SEIEKAMTIKN-GSNSYQEWLDLGNGCLCCSLKNIGVKAIEDMVERSPGKIDYILLETSG 169

Query:   131 LANPAPLASVLWLDDQLESAVRLDSIIT 158
             +A+PAP+A + W D+ L S+V +D IIT
Sbjct:   170 IADPAPIAKMFWQDEGLNSSVYIDGIIT 197

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5JTY5 CBWD3 "COBW domain-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 86/190 (45%), Positives = 125/190 (65%)

Query:     3 DEEEDP-----PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKH 57
             DEEEDP     P  V I ETT             + VT+ITG+LGAGK+TL+NYIL  +H
Sbjct:     9 DEEEDPAEEDCPELVPI-ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQH 67

Query:    58 GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR 117
              KR+AVILNE GE   +E+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+
Sbjct:    68 SKRVAVILNESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQK 126

Query:   118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDL--VSPERSG 175
             K + D ILLETTGLA+P  +AS+ W+D +L S + LD IIT  ++ +K  L  ++ E+  
Sbjct:   127 KGKFDDILLETTGLADPGAVASMFWVDAELGSDIYLDGIIT--IVDSKYGLKHLTEEKPD 184

Query:   176 DSLDELEKEI 185
               ++E  +++
Sbjct:   185 GLINEATRQV 194

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q4V339 CBWD6 "COBW domain-containing protein 6" [Homo sapiens (taxid:9606)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 86/190 (45%), Positives = 125/190 (65%)

Query:     3 DEEEDP-----PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKH 57
             DEEEDP     P  V I ETT             + VT+ITG+LGAGK+TL+NYIL  +H
Sbjct:     9 DEEEDPAEEDCPELVPI-ETTQSEEEEKSGLGAKIPVTIITGYLGAGKTTLLNYILTEQH 67

Query:    58 GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR 117
              KR+AVILNE GE   +E+++    +GG L EEW+EL NGC+CC+VK + ++A+E L+Q+
Sbjct:    68 SKRVAVILNESGEGSALEKSLA-VSQGGELYEEWLELRNGCLCCSVKDNGLRAIENLMQK 126

Query:   118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDL--VSPERSG 175
             K + D ILLETTGLA+P  +AS+ W+D +L S + LD IIT  ++ +K  L  ++ E+  
Sbjct:   127 KGKFDDILLETTGLADPGAVASMFWVDAELGSDIYLDGIIT--IVDSKYGLKHLTEEKPD 184

Query:   176 DSLDELEKEI 185
               ++E  +++
Sbjct:   185 GLINEATRQV 194

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	263
COG0523	323	COG0523, COG0523, Putative GTPases (G3E family) [G	2e-63
pfam02492	178	pfam02492, cobW, CobW/HypB/UreG, nucleotide-bindin	2e-48
cd03112	158	cd03112, CobW_like, The function of this protein f	2e-48
TIGR02475	341	TIGR02475, CobW, cobalamin biosynthesis protein Co	1e-32
PRK11537	318	PRK11537, PRK11537, putative GTP-binding protein Y	2e-28
TIGR00929	785	TIGR00929, VirB4_CagE, type IV secretion/conjugal	0.001

>gnl|CDD|223597 COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]

 Score =  201 bits (513), Expect = 2e-63
 Identities = 92/240 (38%), Positives = 139/240 (57%), Gaps = 39/240 (16%)

Query: 34  VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGV-ERAMINEGEGGALVEEWV 92
           VTVITGFLG+GK+TL+N++L  + GK+IAVI+NEFGE +G+   A++++       EE V
Sbjct: 3   VTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGE-VGIDGGALLSDTG-----EEVV 56

Query: 93  ELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR 152
           EL NGCICCTV+  L+ ALE+L++R++R D +++ETTGLA+PAP+      D +L   VR
Sbjct: 57  ELTNGCICCTVRDDLLPALERLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVR 116

Query: 153 LDSIIT-------------------------DVVILNKVDLVSPERSGDSLDELEKEIHE 187
           LD ++T                         DV++LNK DLV  E     L+ LE  + +
Sbjct: 117 LDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNKTDLVDAE----ELEALEARLRK 172

Query: 188 INSLAHVIRSVRCQVDLSEVLNCRAYDAT-HVTRLEGLLEEHQYKSSQNLHDNNVRTLSI 246
           +N  A +I +    VDL+E+L+   +D    V R   L  +HQ+       +  + + S+
Sbjct: 173 LNPRARIIETSYGDVDLAELLDEGLFDLDRDVGRTSPLFSDHQHDHE--HDEGGISSFSV 230

Length = 323

>gnl|CDD|217066 pfam02492, cobW, CobW/HypB/UreG, nucleotide-binding domain

 Score =  158 bits (401), Expect = 2e-48
 Identities = 69/187 (36%), Positives = 104/187 (55%), Gaps = 34/187 (18%)

Query: 34  VTVITGFLGAGKSTLVNYIL-NGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWV 92
           VTV+TGFLG+GK+TL+ ++L   + G +IAVI+N+FGE  G++  ++ E          V
Sbjct: 2   VTVLTGFLGSGKTTLLEHLLEKNREGLKIAVIVNDFGE-TGIDAELLRETG-----ALIV 55

Query: 93  ELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR 152
           EL NGCICCT++  L   LE L++ KERLD + +ETTGLA PAP+A       +L S + 
Sbjct: 56  ELNNGCICCTLREDLSMVLEALLELKERLDLLFIETTGLACPAPVAQTFL-SPELRSDLG 114

Query: 153 LDSIIT-----------------------DVVILNKVDLVSPERSGDSLDELEKEIHEIN 189
           LD ++T                       D++++NK DL         L++LE ++  +N
Sbjct: 115 LDGVVTVVDVAETEGEDIPEKAPDQIAFADLIVINKTDLAPAV---ADLEKLEADLRRLN 171

Query: 190 SLAHVIR 196
             A +I 
Sbjct: 172 PEAPIIP 178

This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans. Length = 178

>gnl|CDD|239386 cd03112, CobW_like, The function of this protein family is unkown

 Score =  157 bits (398), Expect = 2e-48
 Identities = 68/163 (41%), Positives = 99/163 (60%), Gaps = 34/163 (20%)

Query: 34  VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVE 93
           VTV+TGFLGAGK+TL+N+IL  +HG++IAVI NEFG E+G++  ++ + +     EE +E
Sbjct: 2   VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFG-EVGIDNQLVVDTD-----EEIIE 55

Query: 94  LANGCICCTVKHSLVQAL----EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLES 149
           + NGCICCTV+  L++AL    E+L   K   D I++ETTGLA+P P+A   ++D++L  
Sbjct: 56  MNNGCICCTVRGDLIRALLDLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAE 115

Query: 150 AVRLDSIIT------------------------DVVILNKVDL 168
              LD +IT                        D ++LNK DL
Sbjct: 116 RYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLNKTDL 158

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K. Length = 158

>gnl|CDD|233883 TIGR02475, CobW, cobalamin biosynthesis protein CobW

 Score =  121 bits (306), Expect = 1e-32
 Identities = 60/131 (45%), Positives = 88/131 (67%), Gaps = 5/131 (3%)

Query: 32  VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINE-GEGGALVEE 90
           + VT++TGFLGAGK+TL+ ++L    G+RIAVI+NEFG+ +G++  ++   G  G   E 
Sbjct: 4   IPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGD-LGIDGEILKACGIEGCSEEN 62

Query: 91  WVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLES 149
            VELANGCICCTV    +  + +L+ R++R DHIL+ET+GLA P PL     W +  + S
Sbjct: 63  IVELANGCICCTVADDFIPTMTKLLARRQRPDHILIETSGLALPKPLVQAFQWPE--IRS 120

Query: 150 AVRLDSIITDV 160
            V +D ++T V
Sbjct: 121 RVTVDGVVTVV 131

The family of proteins identified by this model is generally found proximal to the trimeric cobaltochelatase subunit CobN which is essential for vitamin B12 (cobalamin) biosynthesis. The protein contains an P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683) [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 341

>gnl|CDD|183183 PRK11537, PRK11537, putative GTP-binding protein YjiA; Provisional

 Score =  109 bits (275), Expect = 2e-28
 Identities = 73/259 (28%), Positives = 123/259 (47%), Gaps = 55/259 (21%)

Query: 32  VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
           + VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFG E+ V+  +I     G    + 
Sbjct: 4   IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFG-EVSVDDQLI-----GDRATQI 57

Query: 92  VELANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQL 147
             L NGCICC+  + L  AL  L+   ++     D +++E TG+A+P P+    +  + L
Sbjct: 58  KTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVL 117

Query: 148 ESAVRLDSIIT------------------------DVVILNKVDLVSPERSGDSLDELEK 183
                LD +I                         D ++L K D+      G++ ++L +
Sbjct: 118 CQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA-----GEA-EKLRE 171

Query: 184 EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLH-----D 238
            +  IN+ A V   V   +DLS + N   +          +LEE+   +    H      
Sbjct: 172 RLARINARAPVYTVVHGDIDLSLLFNTNGF----------MLEENVVSTKPRFHFIADKQ 221

Query: 239 NNVRTLSICEPLAVNLDKV 257
           N++ ++ +     V++ +V
Sbjct: 222 NDISSIVVELDYPVDISEV 240

Length = 318

>gnl|CDD|233193 TIGR00929, VirB4_CagE, type IV secretion/conjugal transfer ATPase, VirB4 family

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 23  NSHENDDVSVGVTVITGFLGAGKSTLVNYILN 54
           N H  D   +G T+I G  G+GK+TL+N++L 
Sbjct: 425 NFHVRDAKVLGHTLIFGPTGSGKTTLLNFLLA 456

Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation). Length = 785

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	100.0
COG0523	323	Putative GTPases (G3E family) [General function pr	100.0
PRK11537	318	putative GTP-binding protein YjiA; Provisional	100.0
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	100.0
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	99.96
cd03112	158	CobW_like The function of this protein family is u	99.9
COG1159	298	Era GTPase [General function prediction only]	99.89
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.88
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.86
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.78
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.77
COG1160	444	Predicted GTPases [General function prediction onl	99.76
COG1160	444	Predicted GTPases [General function prediction onl	99.73
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.73
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.7
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.69
PRK00089	292	era GTPase Era; Reviewed	99.67
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.67
COG0218	200	Predicted GTPase [General function prediction only	99.67
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.66
PRK15494	339	era GTPase Era; Provisional	99.65
PRK12298	390	obgE GTPase CgtA; Reviewed	99.64
COG2262	411	HflX GTPases [General function prediction only]	99.56
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.54
COG0486	454	ThdF Predicted GTPase [General function prediction	99.53
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.51
PRK11058	426	GTPase HflX; Provisional	99.5
PRK12299	335	obgE GTPase CgtA; Reviewed	99.49
PRK03003	472	GTP-binding protein Der; Reviewed	99.47
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.47
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.46
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.45
PRK12297	424	obgE GTPase CgtA; Reviewed	99.45
PRK00093	435	GTP-binding protein Der; Reviewed	99.45
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.45
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.44
COG0536	369	Obg Predicted GTPase [General function prediction	99.43
PRK12296	500	obgE GTPase CgtA; Reviewed	99.43
COG1084	346	Predicted GTPase [General function prediction only	99.42
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.41
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.39
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.39
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.39
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.38
PRK03003	472	GTP-binding protein Der; Reviewed	99.33
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.32
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.3
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.3
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.29
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.28
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.28
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.28
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.28
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.27
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.25
PRK00093	435	GTP-binding protein Der; Reviewed	99.25
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.24
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.24
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.24
COG1163	365	DRG Predicted GTPase [General function prediction	99.22
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.22
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.22
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.21
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.21
PRK04213	201	GTP-binding protein; Provisional	99.21
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.21
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.2
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.2
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.2
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.19
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.19
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.18
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.17
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.17
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.17
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.17
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.16
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.16
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.15
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.15
cd00881	189	GTP_translation_factor GTP translation factor fami	99.15
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.15
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.15
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.15
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.15
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.15
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.15
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.14
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.14
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.13
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.13
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.13
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.13
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.13
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.12
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.12
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.12
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.12
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.12
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.11
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.11
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.11
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.11
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.11
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.11
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.1
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.1
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.1
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.1
PLN03118	211	Rab family protein; Provisional	99.1
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.09
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.09
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.09
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.09
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.08
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.07
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.06
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.06
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.06
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.04
PRK13768	253	GTPase; Provisional	99.04
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.03
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.03
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.03
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.03
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.02
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.02
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.01
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.01
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.0
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.0
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	98.99
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	98.99
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	98.99
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	98.98
PTZ00369	189	Ras-like protein; Provisional	98.98
PLN00223	181	ADP-ribosylation factor; Provisional	98.98
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	98.97
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	98.97
PTZ00133	182	ADP-ribosylation factor; Provisional	98.96
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	98.96
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	98.96
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	98.95
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	98.95
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.95
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	98.94
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	98.94
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	98.94
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	98.93
PRK09866	741	hypothetical protein; Provisional	98.93
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.93
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	98.93
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	98.92
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	98.92
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	98.92
PRK12317	425	elongation factor 1-alpha; Reviewed	98.91
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	98.91
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	98.9
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.89
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	98.89
PLN03108	210	Rab family protein; Provisional	98.88
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	98.88
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	98.88
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.88
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	98.88
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	98.86
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	98.86
PLN03110	216	Rab GTPase; Provisional	98.86
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	98.86
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	98.86
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	98.85
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	98.85
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	98.85
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	98.85
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	98.84
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	98.84
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.84
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	98.84
PRK05306	787	infB translation initiation factor IF-2; Validated	98.83
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.81
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	98.81
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	98.81
CHL00189	742	infB translation initiation factor 2; Provisional	98.8
cd03114	148	ArgK-like The function of this protein family is u	98.8
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.79
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.78
KOG0410	410	consensus Predicted GTP binding protein [General f	98.76
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.76
PRK12736	394	elongation factor Tu; Reviewed	98.76
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.76
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	98.76
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.75
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	98.74
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.74
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.74
CHL00071	409	tufA elongation factor Tu	98.73
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	98.73
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	98.72
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.72
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	98.72
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	98.72
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	98.71
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.71
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	98.69
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	98.69
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.68
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.68
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	98.67
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.67
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.66
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	98.66
PRK09602	396	translation-associated GTPase; Reviewed	98.66
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	98.66
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.66
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.65
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	98.65
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	98.64
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.64
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.64
PRK12735	396	elongation factor Tu; Reviewed	98.63
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.63
PF09439	181	SRPRB: Signal recognition particle receptor beta s	98.63
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.63
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.63
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.63
PRK04004	586	translation initiation factor IF-2; Validated	98.63
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.62
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	98.62
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.62
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.61
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.6
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.6
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.6
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.6
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	98.59
COG2229	187	Predicted GTPase [General function prediction only	98.59
PRK00049	396	elongation factor Tu; Reviewed	98.59
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.58
cd04105	203	SR_beta Signal recognition particle receptor, beta	98.57
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.57
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.57
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	98.56
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.55
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	98.55
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.54
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.54
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.54
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.54
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	98.53
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.53
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.53
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.53
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	98.52
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.52
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.52
COG4559	259	ABC-type hemin transport system, ATPase component	98.51
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	98.51
PTZ00141	446	elongation factor 1- alpha; Provisional	98.51
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.51
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.51
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.51
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.5
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.5
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.5
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.5
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.5
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.5
PRK05433	600	GTP-binding protein LepA; Provisional	98.5
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.5
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.5
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.5
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.5
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	98.49
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.49
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.49
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.49
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	98.49
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.49
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.49
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.49
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.49
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.48
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.48
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.48
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.48
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	98.48
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.48
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.48
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.47
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.47
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.47
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.47
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.47
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	98.47
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.47
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.47
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.47
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.47
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.46
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.46
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.46
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.46
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.46
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.46
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.46
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.45
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.45
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.45
PLN03127	447	Elongation factor Tu; Provisional	98.45
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.45
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.45
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.45
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.45
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.45
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.44
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.44
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.44
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.44
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.44
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.44
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.44
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.44
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.43
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.43
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.43
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.43
PRK10218	607	GTP-binding protein; Provisional	98.43
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.43
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.43
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.43
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.43
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.43
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.42
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.42
KOG0090	238	consensus Signal recognition particle receptor, be	98.42
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.42
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.42
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.42
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.42
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.42
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.42
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	98.42
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.41
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.41
PRK10908	222	cell division protein FtsE; Provisional	98.41
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.41
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.41
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.41
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.41
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.41
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.41
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.41
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.4
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	98.4
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.4
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.4
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.4
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.4
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.4
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.4
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.39
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.39
PRK10416	318	signal recognition particle-docking protein FtsY;	98.39
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.39
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	98.39
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.39
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.39
PRK00007	693	elongation factor G; Reviewed	98.39
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.38
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.38
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.38
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.38
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.38
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.38
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.38
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.38
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.38
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.37
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.37
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.37
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.37
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.37
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	98.37
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.37
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.37
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.37
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.37
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.37
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.37
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.37
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.36
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.36
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.36
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.36
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.36
PRK10938	490	putative molybdenum transport ATP-binding protein	98.36
PRK12739	691	elongation factor G; Reviewed	98.36
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.35
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.35
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.35
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.34
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.34
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.34
PRK14974	336	cell division protein FtsY; Provisional	98.34
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.34
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	98.34
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.34
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.34
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.34
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.33
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.33
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.33
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.33
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.33
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.33
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.33
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.33
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.32
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.32
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	98.32
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.32
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.32
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.32
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	98.32
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.32
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.32
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.31
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	98.31
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.31
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.31
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.31
PLN03126	478	Elongation factor Tu; Provisional	98.31
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	98.31
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.31
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.31
PRK11147	635	ABC transporter ATPase component; Reviewed	98.31
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.31
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.31
COG3596	296	Predicted GTPase [General function prediction only	98.3
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.3
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.3
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.3
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.3
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.3
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	98.3
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.3
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.3
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.29
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.29
PLN03073	718	ABC transporter F family; Provisional	98.29
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.29
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.29
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.29
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.29
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.29
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.29
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.29
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.29
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.29
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.28
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.28
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.28
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.28
cd03246	173	ABCC_Protease_Secretion This family represents the	98.28
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	98.28
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.27
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.26
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.26
PRK11147	635	ABC transporter ATPase component; Reviewed	98.26
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.26
PRK10938	490	putative molybdenum transport ATP-binding protein	98.26
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.26
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.25
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.25
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.25
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.25
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.25
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.23
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.23
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.23
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.23
COG0488	530	Uup ATPase components of ABC transporters with dup	98.22
cd03116	159	MobB Molybdenum is an essential trace element in t	98.22
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.22
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.22
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.22
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.21
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.21
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.21
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	98.21
COG1161	322	Predicted GTPases [General function prediction onl	98.21
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.2
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.2
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.2
COG1100	219	GTPase SAR1 and related small G proteins [General	98.2
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.2
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.19
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.19
PRK09601	364	GTP-binding protein YchF; Reviewed	98.19
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.19

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=100.00  E-value=1e-40  Score=277.52  Aligned_cols=232  Identities=50%  Similarity=0.813  Sum_probs=205.2

Q ss_pred             ccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecc
Q 024744           25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK  104 (263)
Q Consensus        25 ~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~  104 (263)
                      +...+.++|+.+|+||+|||||||+|.|+...+|+|+||+.|+||+..+++..+......+.+++++++|.|||+||+.+
T Consensus        50 ~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk  129 (391)
T KOG2743|consen   50 KSSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVK  129 (391)
T ss_pred             ccCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEec
Confidence            44456799999999999999999999999999999999999999987788888877654566678899999999999999


Q ss_pred             hhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEe--------------------------
Q 024744          105 HSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT--------------------------  158 (263)
Q Consensus       105 ~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~--------------------------  158 (263)
                      +....++..+.++..++|+|++||+|+++|.++++++|+++.+.+-++++++++                          
T Consensus       130 ~~gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~Q  209 (391)
T KOG2743|consen  130 DNGVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQ  209 (391)
T ss_pred             chHHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHH
Confidence            999999999999889999999999999999999999999999998889998876                          


Q ss_pred             ----eEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCC
Q 024744          159 ----DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQ  234 (263)
Q Consensus       159 ----~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~  234 (263)
                          |.|++||+|+++.+    .+..++++++.+|..|+++++.++++++..++.+-|++.+....+...+.  +..+.+
T Consensus       210 iA~AD~II~NKtDli~~e----~~~~l~q~I~~INslA~m~~Tky~~vdlsnvLdi~ayds~ss~nl~~k~~--~~~~~~  283 (391)
T KOG2743|consen  210 IALADRIIMNKTDLVSEE----EVKKLRQRIRSINSLAQMIETKYSRVDLSNVLDIHAFDSESSINLDKKLQ--HSGGTQ  283 (391)
T ss_pred             HhhhheeeeccccccCHH----HHHHHHHHHHHhhhHHHhhhhhhccccHHHhcccccccccccchhhhhhc--cCCCCC
Confidence                88999999999986    67999999999999999999999999999999999998774443433322  222345


Q ss_pred             CCCCCCEEEEEEEcCCCCCHHHHHhhhc
Q 024744          235 NLHDNNVRTLSICEPLAVNLDKVILQIA  262 (263)
Q Consensus       235 ~~~~~~i~~~~~~~~~~~~~~~l~~~l~  262 (263)
                      .+|++++.++.+..+.-.+-+.+++||+
T Consensus       284 ~h~d~~i~ti~~~~~~~~~~E~~n~wl~  311 (391)
T KOG2743|consen  284 IHLDQSIGTITFEVPGLAKEEHLNMWLQ  311 (391)
T ss_pred             cccCCCcceEEEEeCCccCHHHHHHHHH
Confidence            5568899999999999999999999996

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=100.00  E-value=1.6e-39  Score=282.21  Aligned_cols=218  Identities=41%  Similarity=0.719  Sum_probs=183.3

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      +|+++|+||+|||||||||.|+.+.+|+|+||+.|++|+ +++|. ..+...+     .++.+++|||+||+.++++.+.
T Consensus         1 ipVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGE-vgID~~~~l~~~~-----e~~~El~nGCICCT~r~dl~~~   74 (323)
T COG0523           1 IPVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGE-VGIDGGALLSDTG-----EEVVELTNGCICCTVRDDLLPA   74 (323)
T ss_pred             CCEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCcc-ccccCCCccccCC-----ccEEEeCCceEEEeccchhHHH
Confidence            589999999999999999999999889999999999998 99994 5555433     3589999999999999999999


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEe-------------------------eEEEEec
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT-------------------------DVVILNK  165 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~-------------------------~iivlNK  165 (263)
                      +.++..+...+|+|+||++|+++|.++.+.+...+.+...+.++.+++                         ++|++||
T Consensus        75 ~~~L~~~~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD~ivlNK  154 (323)
T COG0523          75 LERLLRRRDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFADVIVLNK  154 (323)
T ss_pred             HHHHHhccCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCcEEEEec
Confidence            999998567899999999999999999888776667777778887775                         9999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhcc-CCCCCCCCC-CEEE
Q 024744          166 VDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQY-KSSQNLHDN-NVRT  243 (263)
Q Consensus       166 ~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~-~~~~~~~~~-~i~~  243 (263)
                      +|+++++    .++.+++.++++||.|+++.+.++..+...++....++....   ..+...+.. .+|+|.|++ ++++
T Consensus       155 ~Dlv~~~----~l~~l~~~l~~lnp~A~i~~~~~~~~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~h~h~~~~~~i~s  227 (323)
T COG0523         155 TDLVDAE----ELEALEARLRKLNPRARIIETSYGDVDLAELLDEGLFDLDRD---VGRTSPLFSDHQHDHEHDEGGISS  227 (323)
T ss_pred             ccCCCHH----HHHHHHHHHHHhCCCCeEEEccccCCCHHHhhcccccccccc---ccccCccccccCCCchhcccCceE
Confidence            9999986    478999999999999999999999999989998888775541   111111111 123333333 6999


Q ss_pred             EEEEcCCCCCHHHHHhhhc
Q 024744          244 LSICEPLAVNLDKVILQIA  262 (263)
Q Consensus       244 ~~~~~~~~~~~~~l~~~l~  262 (263)
                      +++.+++|+++++|.+||.
T Consensus       228 ~~~~~~~p~~~~~l~~~l~  246 (323)
T COG0523         228 FSVRADRPFDPERLEAFLD  246 (323)
T ss_pred             EEEecCCCCCHHHHHHHHH
Confidence            9999999999999999985

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=100.00  E-value=1.9e-36  Score=264.13  Aligned_cols=215  Identities=31%  Similarity=0.539  Sum_probs=172.5

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      ++|+++|+||+|||||||||+|+...++.+++|+.|++|+ .++|..++....     .+++++.+||+||+.++++...
T Consensus         3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~-v~iD~~ll~~~~-----~~v~eL~~GCiCCs~~~~l~~~   76 (318)
T PRK11537          3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELEDA   76 (318)
T ss_pred             ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCC-ccccHHHHhCcC-----ceEEEECCCEEEEccCchHHHH
Confidence            5799999999999999999999988779999999999998 899988876432     2578999999999999999999


Q ss_pred             HHHHHHhc----cCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEe------------------------eEEE
Q 024744          111 LEQLVQRK----ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT------------------------DVVI  162 (263)
Q Consensus       111 l~~~~~~~----~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~------------------------~iiv  162 (263)
                      +.+++.+.    ..+|+|+||++|+++|.++.+.++.++.+...+.++.+++                        ++|+
T Consensus        77 l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~~AD~Iv  156 (318)
T PRK11537         77 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL  156 (318)
T ss_pred             HHHHHHHHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHHhCCEEE
Confidence            99997532    2699999999999999998877654555666666666554                        9999


Q ss_pred             EecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCCCCCCEE
Q 024744          163 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVR  242 (263)
Q Consensus       163 lNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~~~~~i~  242 (263)
                      +||+|++++.      +++++.++.+||.++++.+.++.++...++.+.++.-.....    ...+. .+++++|++++.
T Consensus       157 lnK~Dl~~~~------~~~~~~l~~lnp~a~i~~~~~~~v~~~~l~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~i~  225 (318)
T PRK11537        157 LTKTDVAGEA------EKLRERLARINARAPVYTVVHGDIDLSLLFNTNGFMLEENVV----STKPR-FHFIADKQNDIS  225 (318)
T ss_pred             EeccccCCHH------HHHHHHHHHhCCCCEEEEeccCCCCHHHHhCCCCcCcccccc----ccCcc-cccCCcccCceE
Confidence            9999999752      789999999999999999999999988888665433111100    00111 111234556799


Q ss_pred             EEEEEcCCCCCHHHHHhhhc
Q 024744          243 TLSICEPLAVNLDKVILQIA  262 (263)
Q Consensus       243 ~~~~~~~~~~~~~~l~~~l~  262 (263)
                      ++++++++|+++++|++||+
T Consensus       226 s~~~~~~~p~~~~~l~~~L~  245 (318)
T PRK11537        226 SIVVELDYPVDISEVSRVME  245 (318)
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            99999999999999999985

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=100.00  E-value=9.5e-35  Score=255.99  Aligned_cols=225  Identities=32%  Similarity=0.557  Sum_probs=169.3

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCC-CcceeeeeeecCcceEeecchhHH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEG-GALVEEWVELANGCICCTVKHSLV  108 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~-~~~~~~~~~l~~g~~~~~~~~~~~  108 (263)
                      .++|+++|+||+|||||||+|+++...++.+++|+.|++|+ .++|..++..... .....+++++.+||+||+.++++.
T Consensus         2 ~~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~-~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~   80 (341)
T TIGR02475         2 AKIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGD-LGIDGEILKACGIEGCSEENIVELANGCICCTVADDFI   80 (341)
T ss_pred             CccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCcc-ccchHHHHhccccccCCcceEEEeCCCCccccCcHHHH
Confidence            35799999999999999999999988779999999999998 8999888764321 011235899999999999999999


Q ss_pred             HHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCe---------------------------------
Q 024744          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDS---------------------------------  155 (263)
Q Consensus       109 ~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~---------------------------------  155 (263)
                      ..+.+++.+...+|+|+||++|+++|.++.+.+. .+.+...+.++.                                 
T Consensus        81 ~~l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~-~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (341)
T TIGR02475        81 PTMTKLLARRQRPDHILIETSGLALPKPLVQAFQ-WPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLD  159 (341)
T ss_pred             HHHHHHHhccCCCCEEEEeCCCCCCHHHHHHHhc-CccccceEEeeeEEEEEECchhhhhccccchhhhhhhcccccccc
Confidence            9999998655789999999999999999887652 111111111100                                 


Q ss_pred             -------------EEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC-CCeEEEeecCCCChhhhhccccCCcchhhhh
Q 024744          156 -------------IITDVVILNKVDLVSPERSGDSLDELEKEIHEINS-LAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  221 (263)
Q Consensus       156 -------------~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p-~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l  221 (263)
                                   ..+++|++||+|+++++    .++.+++.|+.+|| .++++.+.++.++...++.+...........
T Consensus       160 ~~~~~~~~~~~Qi~~AD~IvlnK~Dl~~~~----~l~~~~~~l~~~~~~~a~i~~~~~~~v~~~~ll~~~~~~~~~~~~~  235 (341)
T TIGR02475       160 HETPLEELFEDQLACADLVILNKADLLDAA----GLARVRAEIAAELPRAVKIVEASHGEVDARVLLGLGAAAEDDLDNR  235 (341)
T ss_pred             ccchHHHHHHHHHHhCCEEEEeccccCCHH----HHHHHHHHHHHhCCCCCEEEEcccCCCCHHHHhCCCCcChhhhhcC
Confidence                         02399999999999875    57899999999887 4699999999999999887644322211100


Q ss_pred             hhhhhhhccCCCCCCCCCCEEEEEEEcCCCCCHHHHHhhhcC
Q 024744          222 EGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIAS  263 (263)
Q Consensus       222 ~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~  263 (263)
                      ..+   +..+.+++++++++.++++++++|+++++|++||++
T Consensus       236 ~~~---~~~~~~~~~~~~~i~s~~~~~~~p~~~~~~~~~L~~  274 (341)
T TIGR02475       236 PSH---HDFEGGEEHDHDEFDSVVVDLGEVADPAALRQRLER  274 (341)
T ss_pred             ccc---ccccCCCCCCCCCEEEEEEEcCCCCCHHHHHHHHHh
Confidence            000   000111233446799999999999999999999963

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=99.96  E-value=5.5e-29  Score=201.12  Aligned_cols=151  Identities=50%  Similarity=0.885  Sum_probs=117.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHH-ccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYIL-NGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~-~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      |+++|+||+||||||||++++ ...++.+++++.||+|. .++|...+...+     ..+.++.+||+||+.+.++...+
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~-~~iD~~~l~~~~-----~~v~~l~~gcicc~~~~~~~~~l   74 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGE-VNIDAELLQEDG-----VPVVELNNGCICCTLRDDLVEAL   74 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTS-THHHHHHHHTTT------EEEEECTTTESS-TTS-HHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccc-cccchhhhcccc-----eEEEEecCCCcccccHHHHHHHH
Confidence            789999999999999999999 56779999999999998 889998887642     24789999999999999999999


Q ss_pred             HHHHHhc-cCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEe------------------------eEEEEecC
Q 024744          112 EQLVQRK-ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT------------------------DVVILNKV  166 (263)
Q Consensus       112 ~~~~~~~-~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~------------------------~iivlNK~  166 (263)
                      .++.... ..+|+|+||++|+++|.++.  +. +..+...+.+..+++                        ++|++||+
T Consensus        75 ~~l~~~~~~~~d~IiIE~sG~a~p~~l~--~~-~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~ADvIvlnK~  151 (178)
T PF02492_consen   75 RRLLREYEERPDRIIIETSGLADPAPLI--LQ-DPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFADVIVLNKI  151 (178)
T ss_dssp             HHHCCCCHGC-SEEEEEEECSSGGGGHH--HH-SHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-SEEEEE-G
T ss_pred             HHHHHhcCCCcCEEEECCccccccchhh--hc-cccccccccccceeEEeccccccccccchhhhhhcchhcCEEEEecc
Confidence            9998643 37999999999999999982  11 333333344444332                        99999999


Q ss_pred             CCCCCCCCcchHHHHHHHHHhhcCCCeEE
Q 024744          167 DLVSPERSGDSLDELEKEIHEINSLAHVI  195 (263)
Q Consensus       167 Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~  195 (263)
                      |+++.++   .++++++.++++||.++|+
T Consensus       152 D~~~~~~---~i~~~~~~ir~lnp~a~Iv  177 (178)
T PF02492_consen  152 DLVSDEQ---KIERVREMIRELNPKAPIV  177 (178)
T ss_dssp             GGHHHH-----HHHHHHHHHHH-TTSEEE
T ss_pred             ccCChhh---HHHHHHHHHHHHCCCCEEe
Confidence            9998752   3589999999999999876

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd03112 CobW_like The function of this protein family is unkown

Probab=99.90  E-value=4e-23  Score=163.59  Aligned_cols=130  Identities=52%  Similarity=0.929  Sum_probs=102.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      |+++++|++|||||||++.+++...+.+++++.+++|+ ..+|...+....     ..++++.+||+||+.+.++...+.
T Consensus         1 p~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~-~~~d~~~~~~~~-----~~v~~l~~GCiCC~~~~~l~~~l~   74 (158)
T cd03112           1 PVTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGE-VGIDNQLVVDTD-----EEIIEMNNGCICCTVRGDLIRALL   74 (158)
T ss_pred             CEEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCc-cchhHHHHhCCC-----ceEEEeCCCEeEeeCchhHHHHHH
Confidence            68899999999999999999988778899999999997 788877766422     257889999999999999999986


Q ss_pred             HHHH----hccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEe------------------------eEEEEe
Q 024744          113 QLVQ----RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIIT------------------------DVVILN  164 (263)
Q Consensus       113 ~~~~----~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~------------------------~iivlN  164 (263)
                      +++.    ...++|+|++|++|+++|.+..+.++.+..+...+.++.++.                        ++||+|
T Consensus        75 ~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad~ivln  154 (158)
T cd03112          75 DLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFADRILLN  154 (158)
T ss_pred             HHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCCEEEEe
Confidence            5543    246899999999999999988765443444444444444332                        888888


Q ss_pred             cCCC
Q 024744          165 KVDL  168 (263)
Q Consensus       165 K~Dl  168 (263)
                      |+|+
T Consensus       155 k~dl  158 (158)
T cd03112         155 KTDL  158 (158)
T ss_pred             cccC
Confidence            8885

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>COG1159 Era GTPase [General function prediction only]

Probab=99.89  E-value=3.6e-23  Score=174.23  Aligned_cols=197  Identities=21%  Similarity=0.340  Sum_probs=139.1

Q ss_pred             CcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHH
Q 024744           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (263)
Q Consensus        29 ~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~  108 (263)
                      .++..+|+|+|+||+|||||+|+|+    |.|++++++.++||+....++.... +.+.+  ++|+ ||.  +..+..+.
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~----G~KisIvS~k~QTTR~~I~GI~t~~-~~QiI--fvDT-PGi--h~pk~~l~   72 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALV----GQKISIVSPKPQTTRNRIRGIVTTD-NAQII--FVDT-PGI--HKPKHALG   72 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHh----cCceEeecCCcchhhhheeEEEEcC-CceEE--EEeC-CCC--CCcchHHH
Confidence            4677899999999999999999999    9999999999999988777777654 34444  7888 665  55677788


Q ss_pred             HHHHHHHHhc-cCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          109 QALEQLVQRK-ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       109 ~~l~~~~~~~-~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      +.|.+.+... ..+|+|++-+.+.....+..+..  -+.+.. ..    .+.++++||+|..+++.   .+..+.+.++.
T Consensus        73 ~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~i--l~~lk~-~~----~pvil~iNKID~~~~~~---~l~~~~~~~~~  142 (298)
T COG1159          73 ELMNKAARSALKDVDLILFVVDADEGWGPGDEFI--LEQLKK-TK----TPVILVVNKIDKVKPKT---VLLKLIAFLKK  142 (298)
T ss_pred             HHHHHHHHHHhccCcEEEEEEeccccCCccHHHH--HHHHhh-cC----CCeEEEEEccccCCcHH---HHHHHHHHHHh
Confidence            8888777544 68999999554433333322221  122332 11    34999999999998752   12344444433


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh-----hccCCCCCCCCCCEEEEEEEcCCCCCHHHHHhhhc
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE-----HQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIA  262 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~-----~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~  262 (263)
                      ..             ++.+++++||.+|.|++.|.+.+..     +++||.++.+|++.+++..    .+-+++++.+++
T Consensus       143 ~~-------------~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~a----EiiREk~~~~l~  205 (298)
T COG1159         143 LL-------------PFKEIVPISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAA----EIIREKLLLLLR  205 (298)
T ss_pred             hC-------------CcceEEEeeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHH----HHHHHHHHHhcc
Confidence            32             5678999999999999999988874     5567777777776666544    344556665554

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.88  E-value=1.4e-22  Score=172.83  Aligned_cols=179  Identities=19%  Similarity=0.212  Sum_probs=131.3

Q ss_pred             ccCCCcceEEEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec
Q 024744           25 HENDDVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV  103 (263)
Q Consensus        25 ~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~  103 (263)
                      ..+...+..++.|+|+||||||||++++++. ....+++++.++.++ .. |...+...+     ...+.+++||+||..
T Consensus        97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t-~~-Da~rI~~~g-----~pvvqi~tG~~Chl~  169 (290)
T PRK10463         97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQT-VN-DAARIRATG-----TPAIQVNTGKGCHLD  169 (290)
T ss_pred             HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCc-HH-HHHHHHhcC-----CcEEEecCCCCCcCc
Confidence            3444556779999999999999999999876 345689999999987 54 766665432     246788899999999


Q ss_pred             chhHHHHHHHHHHhccCCcEEEEcccCC-CCchhHH--H---Hhh--cccccccceeeCeE--EeeEEEEecCCCCCCCC
Q 024744          104 KHSLVQALEQLVQRKERLDHILLETTGL-ANPAPLA--S---VLW--LDDQLESAVRLDSI--ITDVVILNKVDLVSPER  173 (263)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~d~ilie~~G~-~~p~~~~--~---~~~--~~~~l~~~~~~~~~--i~~iivlNK~Dl~~~~~  173 (263)
                      ..++..++..+..  ...|+++||++|. ++|..+.  +   +..  ..+......+++.+  .++++|+||+|+++.. 
T Consensus       170 a~mv~~Al~~L~~--~~~d~liIEnvGnLvcPa~fdlge~~~v~vlsV~eg~dkplKyp~~f~~ADIVVLNKiDLl~~~-  246 (290)
T PRK10463        170 AQMIADAAPRLPL--DDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYL-  246 (290)
T ss_pred             HHHHHHHHHHHhh--cCCcEEEEECCCCccCCCccchhhceeEEEEECccccccchhccchhhcCcEEEEEhHHcCccc-
Confidence            8888899888854  5779999999995 6776421  1   000  00000111112111  3499999999998642 


Q ss_pred             CcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          174 SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       174 ~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                       ..+++.+.+.++.+||.+             +++.+||++|+|+++|.+||.+
T Consensus       247 -~~dle~~~~~lr~lnp~a-------------~I~~vSA~tGeGld~L~~~L~~  286 (290)
T PRK10463        247 -NFDVEKCIACAREVNPEI-------------EIILISATSGEGMDQWLNWLET  286 (290)
T ss_pred             -HHHHHHHHHHHHhhCCCC-------------cEEEEECCCCCCHHHHHHHHHH
Confidence             235778888899999876             5889999999999999999865

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.86  E-value=1.5e-21  Score=161.46  Aligned_cols=179  Identities=21%  Similarity=0.258  Sum_probs=121.0

Q ss_pred             cccCCCcceEEEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee
Q 024744           24 SHENDDVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT  102 (263)
Q Consensus        24 ~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~  102 (263)
                      +..+....+|+++++||+|||||||+++++.. ..+.+++++.++++.  +.|...+...+     .+++.+.+||+||.
T Consensus        14 ~~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~--~~D~~~~~~~~-----~~~~~l~~gcic~~   86 (207)
T TIGR00073        14 RERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVIT--KFDAERLRKYG-----APAIQINTGKECHL   86 (207)
T ss_pred             HHHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCC--cccHHHHHHcC-----CcEEEEcCCCcccC
Confidence            34456668999999999999999999999876 335799999999874  45665555432     24678889999996


Q ss_pred             cchhHHHHHHHHHHhccCCcEEEEcccC-CCCchhHHHHh-----hccc-----ccccceeeCeEEeeEEEEecCCCCCC
Q 024744          103 VKHSLVQALEQLVQRKERLDHILLETTG-LANPAPLASVL-----WLDD-----QLESAVRLDSIITDVVILNKVDLVSP  171 (263)
Q Consensus       103 ~~~~~~~~l~~~~~~~~~~d~ilie~~G-~~~p~~~~~~~-----~~~~-----~l~~~~~~~~~i~~iivlNK~Dl~~~  171 (263)
                      ...++...+..+..  ..+|+|++|++| +.+|..+....     ..+.     ..... ......++++++||+|+.+.
T Consensus        87 ~~~~~~~~l~~~~~--~~~d~IiIEt~G~l~~~~~~~~~~~~~i~Vvd~~~~d~~~~~~-~~~~~~a~iiv~NK~Dl~~~  163 (207)
T TIGR00073        87 DAHMVAHALEDLPL--DDIDLLFIENVGNLVCPADFDLGEHMRVVLLSVTEGDDKPLKY-PGMFKEADLIVINKADLAEA  163 (207)
T ss_pred             ChHHHHHHHHHhcc--CCCCEEEEecCCCcCCCcccccccCeEEEEEecCcccchhhhh-HhHHhhCCEEEEEHHHcccc
Confidence            65555455544432  368999999999 55554321000     0000     00000 00001247999999999864


Q ss_pred             CCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          172 ERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       172 ~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ..  .....+.+.+++++|.+             +++.+||++|.|++++.+++.+
T Consensus       164 ~~--~~~~~~~~~l~~~~~~~-------------~i~~~Sa~~g~gv~~l~~~i~~  204 (207)
T TIGR00073       164 VG--FDVEKMKADAKKINPEA-------------EIILMSLKTGEGLDEWLEFLEG  204 (207)
T ss_pred             ch--hhHHHHHHHHHHhCCCC-------------CEEEEECCCCCCHHHHHHHHHH
Confidence            31  13466777777777654             5888999999999999998865

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.78  E-value=2.3e-18  Score=141.22  Aligned_cols=177  Identities=16%  Similarity=0.277  Sum_probs=113.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeee-cCcceEeecchhHH---
Q 024744           34 VTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVEL-ANGCICCTVKHSLV---  108 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l-~~g~~~~~~~~~~~---  108 (263)
                      .++|+|++|||||||++++++. .+..+++++.+++++ . .+...+.... ...-...+.+ .+||.||..+.++.   
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~-~-~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~   79 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT-Q-EDAEFLVKNS-ALPPERILGVETGGCPHTAIREDASMNL   79 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC-h-hHHHHHHHcC-CCCcCceehhhcCCCccceeccCHHHHH
Confidence            5889999999999999999876 345578899999876 2 2333332211 0000123332 58999999988874   


Q ss_pred             HHHHHHHHhccCCcEEEEcccCC--CCchhH--HHH--hhccc----ccccceeeCeEEeeEEEEecCCCCCCCCCcchH
Q 024744          109 QALEQLVQRKERLDHILLETTGL--ANPAPL--ASV--LWLDD----QLESAVRLDSIITDVVILNKVDLVSPERSGDSL  178 (263)
Q Consensus       109 ~~l~~~~~~~~~~d~ilie~~G~--~~p~~~--~~~--~~~~~----~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~  178 (263)
                      ..+.++..+..++|+++||++|.  ..+...  .+.  ...+.    .........-..+|++++||+|+.+..  ...+
T Consensus        80 ~~L~~l~~~~~~~D~iiIEt~G~~l~~~~~~~l~~~~i~vvD~~~~~~~~~~~~~qi~~ad~~~~~k~d~~~~~--~~~~  157 (199)
T TIGR00101        80 EAVAEMEARFPPLEMVFIESGGDNLSATFSPELADLTIFVIDVAAGDKIPRKGGPGITRSDLLVINKIDLAPMV--GADL  157 (199)
T ss_pred             HHHHHHHhcCCCCCEEEEECCCCCcccccchhhhCcEEEEEEcchhhhhhhhhHhHhhhccEEEEEhhhccccc--cccH
Confidence            44555544335799999999993  222210  000  00010    000000001113489999999998632  1246


Q ss_pred             HHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          179 DELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       179 ~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      +.+.+.++.+||.+             +++.+||++|+|++++.+++.++
T Consensus       158 ~~~~~~~~~~~~~~-------------~i~~~Sa~~g~gi~el~~~i~~~  194 (199)
T TIGR00101       158 GVMERDAKKMRGEK-------------PFIFTNLKTKEGLDTVIDWIEHY  194 (199)
T ss_pred             HHHHHHHHHhCCCC-------------CEEEEECCCCCCHHHHHHHHHhh
Confidence            88889999988866             57889999999999999998754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.77  E-value=2e-18  Score=137.27  Aligned_cols=175  Identities=22%  Similarity=0.295  Sum_probs=121.8

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      +-.+.+.|++|||||||+.++++. ....++++|.+|.-+  ..|...+... .+.   ..+....|-.|+.........
T Consensus        13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t--~~Da~~l~~~-~g~---~i~~v~TG~~CH~da~m~~~a   86 (202)
T COG0378          13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT--KEDADRLRKL-PGE---PIIGVETGKGCHLDASMNLEA   86 (202)
T ss_pred             eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec--hhhHHHHHhC-CCC---eeEEeccCCccCCcHHHHHHH
Confidence            458899999999999999999876 346899999999875  2344444431 122   233333443446555666778


Q ss_pred             HHHHHHhccCCcEEEEcccC-CCCchhH--HH---Hhhccc--cccccee-eCeE-EeeEEEEecCCCCCCCCCcchHHH
Q 024744          111 LEQLVQRKERLDHILLETTG-LANPAPL--AS---VLWLDD--QLESAVR-LDSI-ITDVVILNKVDLVSPERSGDSLDE  180 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G-~~~p~~~--~~---~~~~~~--~l~~~~~-~~~~-i~~iivlNK~Dl~~~~~~~~~~~~  180 (263)
                      ++++..+....|++++|..| ++.|...  .+   ++.++-  .-....+ .+.+ .+|++|+||+|+++.-  +..++.
T Consensus        87 i~~l~~~~~~~Dll~iEs~GNL~~~~sp~L~d~~~v~VidvteGe~~P~K~gP~i~~aDllVInK~DLa~~v--~~dlev  164 (202)
T COG0378          87 IEELVLDFPDLDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGGPGIFKADLLVINKTDLAPYV--GADLEV  164 (202)
T ss_pred             HHHHhhcCCcCCEEEEecCcceecccCcchhhceEEEEEECCCCCCCcccCCCceeEeeEEEEehHHhHHHh--CccHHH
Confidence            88887655558999999999 7777643  11   111110  0011112 2222 3599999999999875  347899


Q ss_pred             HHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       181 ~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +.+..+++||.+             +++.+|+++|+|++++.+|+..
T Consensus       165 m~~da~~~np~~-------------~ii~~n~ktg~G~~~~~~~i~~  198 (202)
T COG0378         165 MARDAKEVNPEA-------------PIIFTNLKTGEGLDEWLRFIEP  198 (202)
T ss_pred             HHHHHHHhCCCC-------------CEEEEeCCCCcCHHHHHHHHHh
Confidence            999999999987             4778899999999999998864

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.76  E-value=1.2e-18  Score=154.46  Aligned_cols=161  Identities=22%  Similarity=0.212  Sum_probs=109.8

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      .|+|+|+|+||+|||||+|+|+    +++.+++++.+|.|++.........+..   ..++|+ +| +--...+.+...+
T Consensus         3 ~~~VAIVGRPNVGKSTLFNRL~----g~r~AIV~D~pGvTRDr~y~~~~~~~~~---f~lIDT-gG-l~~~~~~~l~~~i   73 (444)
T COG1160           3 TPVVAIVGRPNVGKSTLFNRLT----GRRIAIVSDTPGVTRDRIYGDAEWLGRE---FILIDT-GG-LDDGDEDELQELI   73 (444)
T ss_pred             CCEEEEECCCCCcHHHHHHHHh----CCeeeEeecCCCCccCCccceeEEcCce---EEEEEC-CC-CCcCCchHHHHHH
Confidence            3899999999999999999999    9999999999999887665555543322   135666 44 3222234566666


Q ss_pred             HHHHHhc-cCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          112 EQLVQRK-ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       112 ~~~~~~~-~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      .+..... ..+|+||+-++|-.-..+..+      .+...++ ..-+|.++|+||+|..+.+       .....      
T Consensus        74 ~~Qa~~Ai~eADvilfvVD~~~Git~~D~------~ia~~Lr-~~~kpviLvvNK~D~~~~e-------~~~~e------  133 (444)
T COG1160          74 REQALIAIEEADVILFVVDGREGITPADE------EIAKILR-RSKKPVILVVNKIDNLKAE-------ELAYE------  133 (444)
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCCHHHH------HHHHHHH-hcCCCEEEEEEcccCchhh-------hhHHH------
Confidence            6655433 689999996666443333221      1222222 2225699999999987443       11111      


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                              ++.+++.++++|||.+|.|+++|.+.+....
T Consensus       134 --------fyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         134 --------FYSLGFGEPVPISAEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             --------HHhcCCCCceEeehhhccCHHHHHHHHHhhc
Confidence                    2334788999999999999999999887764

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.73  E-value=3.7e-19  Score=157.77  Aligned_cols=180  Identities=19%  Similarity=0.236  Sum_probs=117.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhH-----
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL-----  107 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~-----  107 (263)
                      .-++|+|.||+|||||+|+|+    |...+++++.+|+|++.....+...  +.. ..++|+++    -..+...     
T Consensus       179 ikiaiiGrPNvGKSsLiN~il----geeR~Iv~~~aGTTRD~I~~~~e~~--~~~-~~liDTAG----iRrk~ki~e~~E  247 (444)
T COG1160         179 IKIAIIGRPNVGKSSLINAIL----GEERVIVSDIAGTTRDSIDIEFERD--GRK-YVLIDTAG----IRRKGKITESVE  247 (444)
T ss_pred             eEEEEEeCCCCCchHHHHHhc----cCceEEecCCCCccccceeeeEEEC--CeE-EEEEECCC----CCcccccccceE
Confidence            358899999999999999999    7788999999999875433333322  111 24566633    1111111     


Q ss_pred             ----HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHH
Q 024744          108 ----VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEK  183 (263)
Q Consensus       108 ----~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~  183 (263)
                          ...++.+    ..+|.+++-.++.....+.      +..+... ..+.-.+.+||+||||+++..  ...++.+++
T Consensus       248 ~~Sv~rt~~aI----~~a~vvllviDa~~~~~~q------D~~ia~~-i~~~g~~~vIvvNKWDl~~~~--~~~~~~~k~  314 (444)
T COG1160         248 KYSVARTLKAI----ERADVVLLVIDATEGISEQ------DLRIAGL-IEEAGRGIVIVVNKWDLVEED--EATMEEFKK  314 (444)
T ss_pred             EEeehhhHhHH----hhcCEEEEEEECCCCchHH------HHHHHHH-HHHcCCCeEEEEEccccCCch--hhHHHHHHH
Confidence                1222222    4678888833332222221      1111111 111114499999999999864  236788888


Q ss_pred             HHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEEEcCCCCCHHHHHhhhc
Q 024744          184 EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIA  262 (263)
Q Consensus       184 ~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~  262 (263)
                      .|+...|..          ++++++++||.+|.++..+.+.+..-.                -++.+.++++.|++||+
T Consensus       315 ~i~~~l~~l----------~~a~i~~iSA~~~~~i~~l~~~i~~~~----------------~~~~~ri~Ts~LN~~l~  367 (444)
T COG1160         315 KLRRKLPFL----------DFAPIVFISALTGQGLDKLFEAIKEIY----------------ECATRRISTSLLNRVLE  367 (444)
T ss_pred             HHHHHhccc----------cCCeEEEEEecCCCChHHHHHHHHHHH----------------HHhccccCHHHHHHHHH
Confidence            998877765          788999999999999999988765421                13467788888888876

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.73  E-value=8.2e-18  Score=131.77  Aligned_cols=155  Identities=23%  Similarity=0.278  Sum_probs=99.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -|+++|.||+|||||+|+|+    |.+ ..+.|.+|+|+....+.+...+  . -..++|+ ||...-... ...+.+..
T Consensus         2 ~ialvG~PNvGKStLfN~Lt----g~~-~~v~n~pG~Tv~~~~g~~~~~~--~-~~~lvDl-PG~ysl~~~-s~ee~v~~   71 (156)
T PF02421_consen    2 RIALVGNPNVGKSTLFNALT----GAK-QKVGNWPGTTVEKKEGIFKLGD--Q-QVELVDL-PGIYSLSSK-SEEERVAR   71 (156)
T ss_dssp             EEEEEESTTSSHHHHHHHHH----TTS-EEEEESTTSSSEEEEEEEEETT--E-EEEEEE-----SSSSSS-SHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH----CCC-ceecCCCCCCeeeeeEEEEecC--c-eEEEEEC-CCcccCCCC-CcHHHHHH
Confidence            37899999999999999999    777 5679999998877666555432  1 1357898 664211111 11222222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      -.....++|.++.    +.|+..+...+++..++.+. .    +|.++++||+|.+.......+.+.+.+.+.     . 
T Consensus        72 ~~l~~~~~D~ii~----VvDa~~l~r~l~l~~ql~e~-g----~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg-----~-  136 (156)
T PF02421_consen   72 DYLLSEKPDLIIV----VVDATNLERNLYLTLQLLEL-G----IPVVVVLNKMDEAERKGIEIDAEKLSERLG-----V-  136 (156)
T ss_dssp             HHHHHTSSSEEEE----EEEGGGHHHHHHHHHHHHHT-T----SSEEEEEETHHHHHHTTEEE-HHHHHHHHT-----S-
T ss_pred             HHHhhcCCCEEEE----ECCCCCHHHHHHHHHHHHHc-C----CCEEEEEeCHHHHHHcCCEECHHHHHHHhC-----C-
Confidence            2222468999999    77776655443333333322 2    459999999999877655445566666652     2 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  225 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l  225 (263)
                                  +++++||.+|+|+++|.+.|
T Consensus       137 ------------pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen  137 ------------PVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             -------------EEEEBTTTTBTHHHHHHHH
T ss_pred             ------------CEEEEEeCCCcCHHHHHhhC
Confidence                        48899999999999998754

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.70  E-value=3.2e-17  Score=136.51  Aligned_cols=184  Identities=23%  Similarity=0.333  Sum_probs=98.5

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccc---c--chhhhhc--CCCCcceeeeeeecCcceEe
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG---V--ERAMINE--GEGGALVEEWVELANGCICC  101 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~---~--d~~~~~~--~~~~~~~~~~~~l~~g~~~~  101 (263)
                      +..+++|+|+||||||||+++|...  ..|.+++|+.-||.....   +  |+.....  ...++++..+-.-  |. ..
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atR--G~-lG  104 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATR--GS-LG  104 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE-----SS-HH
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcC--CC-CC
Confidence            3468999999999999999999765  459999999999864221   1  1111111  1223333222111  00 00


Q ss_pred             ecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHH-HH---h--hc----ccccccceeeCeEEeeEEEEecCCCCCC
Q 024744          102 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLA-SV---L--WL----DDQLESAVRLDSIITDVVILNKVDLVSP  171 (263)
Q Consensus       102 ~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~-~~---~--~~----~~~l~~~~~~~~~i~~iivlNK~Dl~~~  171 (263)
                      .+.....+.+ .++ ....+|+|||||+|+...+-.. ++   .  .+    .+.++.....-..++|++|+||.|+...
T Consensus       105 Gls~~t~~~v-~ll-~aaG~D~IiiETVGvGQsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEiaDi~vVNKaD~~gA  182 (266)
T PF03308_consen  105 GLSRATRDAV-RLL-DAAGFDVIIIETVGVGQSEVDIADMADTVVLVLVPGLGDEIQAIKAGIMEIADIFVVNKADRPGA  182 (266)
T ss_dssp             HHHHHHHHHH-HHH-HHTT-SEEEEEEESSSTHHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-SEEEEE--SHHHH
T ss_pred             CccHhHHHHH-HHH-HHcCCCEEEEeCCCCCccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhhhccEEEEeCCChHHH
Confidence            1111122222 223 2468999999999998866432 11   0  01    1112211111122459999999996554


Q ss_pred             CCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhcc
Q 024744          172 ERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQY  230 (263)
Q Consensus       172 ~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~  230 (263)
                      +   ....+++..+.-..+.        ...|..+++.+||.+|+|+++|++.+.+|..
T Consensus       183 ~---~~~~~l~~~l~l~~~~--------~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~  230 (266)
T PF03308_consen  183 D---RTVRDLRSMLHLLRER--------EDGWRPPVLKTSALEGEGIDELWEAIDEHRD  230 (266)
T ss_dssp             H---HHHHHHHHHHHHCSTS--------CTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHhhcccc--------ccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3   3455666666544331        1224457889999999999999999987653

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.69  E-value=1.3e-16  Score=134.54  Aligned_cols=185  Identities=22%  Similarity=0.297  Sum_probs=110.2

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccc---c--chhhhhc-C-CCCcceeeeeeecCcceEee
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG---V--ERAMINE-G-EGGALVEEWVELANGCICCT  102 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~---~--d~~~~~~-~-~~~~~~~~~~~l~~g~~~~~  102 (263)
                      -.+++|+|+||||||||+.+|...  ..|.+++|+.-||++...   +  |.-.... . ..++++.   .+++.+....
T Consensus        51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiR---s~~srG~lGG  127 (323)
T COG1703          51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIR---SSPSRGTLGG  127 (323)
T ss_pred             CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEe---ecCCCccchh
Confidence            348999999999999999999765  569999999999865221   1  1111111 0 1222221   2222211112


Q ss_pred             cchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHH-H---Hhh------cccccccceeeCeEEeeEEEEecCCCCCCC
Q 024744          103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLA-S---VLW------LDDQLESAVRLDSIITDVVILNKVDLVSPE  172 (263)
Q Consensus       103 ~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~-~---~~~------~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~  172 (263)
                      +.....+.+. ++ ....+|+|||||+|+...+... .   ++.      ..+.++...+.-..+.|++|+||.|+-..+
T Consensus       128 lS~at~~~i~-~l-dAaG~DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaDi~vINKaD~~~A~  205 (323)
T COG1703         128 LSRATREAIK-LL-DAAGYDVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDDLQGIKAGIMEIADIIVINKADRKGAE  205 (323)
T ss_pred             hhHHHHHHHH-HH-HhcCCCEEEEEecCCCcchhHHhhhcceEEEEecCCCCcHHHHHHhhhhhhhheeeEeccChhhHH
Confidence            2222223332 22 3479999999999998876432 1   110      011122111222235699999999965543


Q ss_pred             CCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhcc
Q 024744          173 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQY  230 (263)
Q Consensus       173 ~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~  230 (263)
                         .....+...|+...      .......|..+++.+||.+|+|+++|++.+.+|..
T Consensus       206 ---~a~r~l~~al~~~~------~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         206 ---KAARELRSALDLLR------EVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             ---HHHHHHHHHHHhhc------ccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence               24455666665442      11123446668899999999999999999987754

>PRK00089 era GTPase Era; Reviewed

Probab=99.67  E-value=9.8e-17  Score=139.45  Aligned_cols=183  Identities=23%  Similarity=0.356  Sum_probs=107.2

Q ss_pred             CcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHH
Q 024744           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (263)
Q Consensus        29 ~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~  108 (263)
                      .++..+|+|+|+||||||||+|+|+    |.+++++++.+++|............ ..  ..++|+ ||..  .....+.
T Consensus         2 ~~~~g~V~iiG~pn~GKSTLin~L~----g~~~~~vs~~~~tt~~~i~~i~~~~~-~q--i~~iDT-PG~~--~~~~~l~   71 (292)
T PRK00089          2 GFKSGFVAIVGRPNVGKSTLLNALV----GQKISIVSPKPQTTRHRIRGIVTEDD-AQ--IIFVDT-PGIH--KPKRALN   71 (292)
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHh----CCceeecCCCCCcccccEEEEEEcCC-ce--EEEEEC-CCCC--CchhHHH
Confidence            3567899999999999999999999    88899999998876554433333221 12  136787 5642  2222333


Q ss_pred             HHHHHHHH-hccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          109 QALEQLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       109 ~~l~~~~~-~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      +.+..... ....+|.+++-.+...........+  ...+.. ..    .+.++|+||+|+.+..   ..+....+.+..
T Consensus        72 ~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i--~~~l~~-~~----~pvilVlNKiDl~~~~---~~l~~~~~~l~~  141 (292)
T PRK00089         72 RAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFI--LEKLKK-VK----TPVILVLNKIDLVKDK---EELLPLLEELSE  141 (292)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHH--HHHHhh-cC----CCEEEEEECCcCCCCH---HHHHHHHHHHHh
Confidence            33333322 1257888887443322111111111  111211 11    4589999999998432   122333333333


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh-----ccCCCCCCCCCCEEEE
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH-----QYKSSQNLHDNNVRTL  244 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~-----~~~~~~~~~~~~i~~~  244 (263)
                      ..             ++.+++++||++|.|+++|.+++...     ++|+.+..++.+.+++
T Consensus       142 ~~-------------~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~  190 (292)
T PRK00089        142 LM-------------DFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFL  190 (292)
T ss_pred             hC-------------CCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHH
Confidence            22             24568899999999999999888743     3455555555544433

>TIGR00436 era GTP-binding protein Era

Probab=99.67  E-value=2.9e-16  Score=135.02  Aligned_cols=174  Identities=18%  Similarity=0.192  Sum_probs=100.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      .|+++|+||||||||+|+|+    +.+++++++.+++|+..........+ ..  ..++|+ ||..  .....+...+.+
T Consensus         2 ~V~liG~pnvGKSTLln~L~----~~~~~~vs~~~~TTr~~i~~i~~~~~-~q--ii~vDT-PG~~--~~~~~l~~~~~~   71 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLH----GQKISITSPKAQTTRNRISGIHTTGA-SQ--IIFIDT-PGFH--EKKHSLNRLMMK   71 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHh----CCcEeecCCCCCcccCcEEEEEEcCC-cE--EEEEEC-cCCC--CCcchHHHHHHH
Confidence            58899999999999999999    88889999999987754433332221 22  247888 5542  122233333332


Q ss_pred             HHH-hccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          114 LVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       114 ~~~-~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ... ....+|.+++-.+.- ++......  +...+.. ..    .+.++|+||+|+.+..    ........+....   
T Consensus        72 ~~~~~l~~aDvvl~VvD~~-~~~~~~~~--i~~~l~~-~~----~p~ilV~NK~Dl~~~~----~~~~~~~~~~~~~---  136 (270)
T TIGR00436        72 EARSAIGGVDLILFVVDSD-QWNGDGEF--VLTKLQN-LK----RPVVLTRNKLDNKFKD----KLLPLIDKYAILE---  136 (270)
T ss_pred             HHHHHHhhCCEEEEEEECC-CCCchHHH--HHHHHHh-cC----CCEEEEEECeeCCCHH----HHHHHHHHHHhhc---
Confidence            221 125788887733321 11111111  1111211 11    4589999999997543    1111112222111   


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh-----hccCCCCCCCCCCEE
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE-----HQYKSSQNLHDNNVR  242 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~-----~~~~~~~~~~~~~i~  242 (263)
                                .+.+++++||++|.|+++|.+++.+     +++|+.+..++++.+
T Consensus       137 ----------~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~  181 (270)
T TIGR00436       137 ----------DFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDR  181 (270)
T ss_pred             ----------CCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHH
Confidence                      2346899999999999999988874     334555555555443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.67  E-value=4.4e-16  Score=124.84  Aligned_cols=181  Identities=18%  Similarity=0.229  Sum_probs=117.8

Q ss_pred             eEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcc
Q 024744           19 HEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGC   98 (263)
Q Consensus        19 ~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~   98 (263)
                      ++......++....|-|+++|++|+|||||||+|++   .++.+-++..||.|+.+....+...      ..++|+ ||.
T Consensus        11 ~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~---~k~LArtSktPGrTq~iNff~~~~~------~~lVDl-PGY   80 (200)
T COG0218          11 TSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTN---QKNLARTSKTPGRTQLINFFEVDDE------LRLVDL-PGY   80 (200)
T ss_pred             EecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhC---CcceeecCCCCCccceeEEEEecCc------EEEEeC-CCc
Confidence            445566777777899999999999999999999993   2457899999998877665544432      247899 777


Q ss_pred             eEeec----chhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCC
Q 024744           99 ICCTV----KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERS  174 (263)
Q Consensus        99 ~~~~~----~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~  174 (263)
                      .+...    ++.+...+.+.+..+.....+++-.++-..|......  +.+.+.. ..    ++.+|++||+|.++..+.
T Consensus        81 GyAkv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~e--m~~~l~~-~~----i~~~vv~tK~DKi~~~~~  153 (200)
T COG0218          81 GYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDRE--MIEFLLE-LG----IPVIVVLTKADKLKKSER  153 (200)
T ss_pred             ccccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHH--HHHHHHH-cC----CCeEEEEEccccCChhHH
Confidence            76653    4556667777776656677777655555555543221  1122221 12    448999999999987532


Q ss_pred             cchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          175 GDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       175 ~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      ...+..+++.+..-.+            +...++..|+.++.|+++++..|.+.
T Consensus       154 ~k~l~~v~~~l~~~~~------------~~~~~~~~ss~~k~Gi~~l~~~i~~~  195 (200)
T COG0218         154 NKQLNKVAEELKKPPP------------DDQWVVLFSSLKKKGIDELKAKILEW  195 (200)
T ss_pred             HHHHHHHHHHhcCCCC------------ccceEEEEecccccCHHHHHHHHHHH
Confidence            1222333322221111            11126677888999999999887653

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.66  E-value=4.6e-16  Score=136.19  Aligned_cols=183  Identities=17%  Similarity=0.246  Sum_probs=107.3

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccc---c--chhhhhc-CCCCcceeeeeeecCcceEeec
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG---V--ERAMINE-GEGGALVEEWVELANGCICCTV  103 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~---~--d~~~~~~-~~~~~~~~~~~~l~~g~~~~~~  103 (263)
                      ..+|+|+|+||||||||++.|...  ..|.+++++..|+++...   +  |...... .....   -++...++  +|.+
T Consensus        56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~---~~~r~~~~--~~~l  130 (332)
T PRK09435         56 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPN---AFIRPSPS--SGTL  130 (332)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCC---eEEEecCC--cccc
Confidence            348999999999999999998664  348899999999976320   0  2111211 11111   12233244  3554


Q ss_pred             c---hhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHH-H-----hhcc----cccccceeeCeEEeeEEEEecCCCCC
Q 024744          104 K---HSLVQALEQLVQRKERLDHILLETTGLANPAPLAS-V-----LWLD----DQLESAVRLDSIITDVVILNKVDLVS  170 (263)
Q Consensus       104 ~---~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~-~-----~~~~----~~l~~~~~~~~~i~~iivlNK~Dl~~  170 (263)
                      .   ....+.+..+ . ...+|++++||+|+........ .     +...    +.+.........+++++|+||+|+.+
T Consensus       131 ~~~a~~~~~~~~~~-~-~~g~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~aDIiVVNKaDl~~  208 (332)
T PRK09435        131 GGVARKTRETMLLC-E-AAGYDVILVETVGVGQSETAVAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINKADGDN  208 (332)
T ss_pred             cchHHHHHHHHHHH-h-ccCCCEEEEECCCCccchhHHHHhCCEEEEEecCCchHHHHHHHhhhhhhhheEEeehhcccc
Confidence            4   2233333333 2 3689999999999986543311 0     0000    01111111011245899999999987


Q ss_pred             CCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744          171 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       171 ~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                      .........++++.++..+|..+        .+..+++.+||.+|.|+++|++.+.++.
T Consensus       209 ~~~a~~~~~el~~~L~l~~~~~~--------~w~~pVi~vSA~~g~GIdeL~~~I~~~~  259 (332)
T PRK09435        209 KTAARRAAAEYRSALRLLRPKDP--------GWQPPVLTCSALEGEGIDEIWQAIEDHR  259 (332)
T ss_pred             hhHHHHHHHHHHHHHhccccccc--------CCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            64322234445555544333211        1224788999999999999999998754

>PRK15494 era GTPase Era; Provisional

Probab=99.65  E-value=4e-16  Score=138.06  Aligned_cols=180  Identities=21%  Similarity=0.252  Sum_probs=109.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ..++++|.+|||||||+|+|+    +.+++++++.+++|++.....+...+  ..+ .++|+ +|..  .....+...+.
T Consensus        53 ~kV~ivG~~nvGKSTLin~l~----~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi-~~~DT-pG~~--~~~~~l~~~~~  122 (339)
T PRK15494         53 VSVCIIGRPNSGKSTLLNRII----GEKLSIVTPKVQTTRSIITGIITLKD--TQV-ILYDT-PGIF--EPKGSLEKAMV  122 (339)
T ss_pred             eEEEEEcCCCCCHHHHHHHHh----CCceeeccCCCCCccCcEEEEEEeCC--eEE-EEEEC-CCcC--CCcccHHHHHH
Confidence            378999999999999999999    77888888888887655444443322  222 47888 4531  22222333333


Q ss_pred             HHHH-hccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~-~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      +.+. ....+|.+++-.+........... + ...+... .    .+.++|+||+|+.+.     .+..+.+.++..++ 
T Consensus       123 r~~~~~l~~aDvil~VvD~~~s~~~~~~~-i-l~~l~~~-~----~p~IlViNKiDl~~~-----~~~~~~~~l~~~~~-  189 (339)
T PRK15494        123 RCAWSSLHSADLVLLIIDSLKSFDDITHN-I-LDKLRSL-N----IVPIFLLNKIDIESK-----YLNDIKAFLTENHP-  189 (339)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCCHHHHH-H-HHHHHhc-C----CCEEEEEEhhcCccc-----cHHHHHHHHHhcCC-
Confidence            3221 124788888844432211221111 1 1111111 1    236789999998653     23455555554433 


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh-----hccCCCCCCCCCCEEEEEEE
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE-----HQYKSSQNLHDNNVRTLSIC  247 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~-----~~~~~~~~~~~~~i~~~~~~  247 (263)
                                  +.+++++||++|.|++++.+++..     +++|+.+..+|++.++++.+
T Consensus       190 ------------~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~e  238 (339)
T PRK15494        190 ------------DSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAE  238 (339)
T ss_pred             ------------CcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHH
Confidence                        236889999999999999998873     55677777777766655443

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.64  E-value=3e-16  Score=140.81  Aligned_cols=185  Identities=17%  Similarity=0.099  Sum_probs=102.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecc-hhHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK-HSLVQALE  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~l~  112 (263)
                      -|+|+|+||||||||+|+|+    +.++ .+++.+++|+......+.... .+.+ .++|+ ||.+-.... ..+...+.
T Consensus       161 dValVG~PNaGKSTLln~Lt----~~k~-~vs~~p~TT~~p~~Giv~~~~-~~~i-~~vDt-PGi~~~a~~~~~Lg~~~l  232 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVS----AAKP-KVADYPFTTLVPNLGVVRVDD-ERSF-VVADI-PGLIEGASEGAGLGIRFL  232 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHh----CCcc-cccCCCCCccCcEEEEEEeCC-CcEE-EEEeC-CCccccccchhhHHHHHH
Confidence            58999999999999999999    4454 678888888877766665432 2211 37888 665322111 11222222


Q ss_pred             HHHHhccCCcEEEEcccCCC---CchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          113 QLVQRKERLDHILLETTGLA---NPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~---~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      +.   ....|.+++-.. +.   ...+..+...+..++..+.......|.++|+||+|+.+..+    +....+.+....
T Consensus       233 ~~---i~radvlL~VVD-~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e----l~~~l~~l~~~~  304 (390)
T PRK12298        233 KH---LERCRVLLHLID-IAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE----AEERAKAIVEAL  304 (390)
T ss_pred             HH---HHhCCEEEEEec-cCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH----HHHHHHHHHHHh
Confidence            22   245677666332 22   11111111111122222110001145899999999976531    222222222221


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh-----hccCCCCCCCCCCEEEEEE
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE-----HQYKSSQNLHDNNVRTLSI  246 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~-----~~~~~~~~~~~~~i~~~~~  246 (263)
                      +.            ...++++||.++.|+++|.+.+..     +++|+.+..++++.+++..
T Consensus       305 ~~------------~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~  354 (390)
T PRK12298        305 GW------------EGPVYLISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWD  354 (390)
T ss_pred             CC------------CCCEEEEECCCCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHH
Confidence            11            114789999999999999877753     3445666666666655543

>COG2262 HflX GTPases [General function prediction only]

Probab=99.56  E-value=2.1e-14  Score=126.04  Aligned_cols=170  Identities=21%  Similarity=0.308  Sum_probs=103.4

Q ss_pred             cccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec
Q 024744           24 SHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV  103 (263)
Q Consensus        24 ~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~  103 (263)
                      ++......+|.|+++|+.|||||||+|+|++    ..+ .+.+..-.|.+.....+.-.+ +..+ -+.|+ -| ....+
T Consensus       184 R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~----~~~-~~~d~LFATLdpttR~~~l~~-g~~v-lLtDT-VG-FI~~L  254 (411)
T COG2262         184 RKKRSRSGIPLVALVGYTNAGKSTLFNALTG----ADV-YVADQLFATLDPTTRRIELGD-GRKV-LLTDT-VG-FIRDL  254 (411)
T ss_pred             hhhhcccCCCeEEEEeeccccHHHHHHHHhc----cCe-eccccccccccCceeEEEeCC-CceE-EEecC-cc-CcccC
Confidence            4455567899999999999999999999993    322 233333233443333322221 1100 12333 22 23456


Q ss_pred             chhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHH
Q 024744          104 KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEK  183 (263)
Q Consensus       104 ~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~  183 (263)
                      ...+.++++..+++...+|+++. +.+.++|....++....+.+... .... +|.++|+||+|++....       ...
T Consensus       255 P~~LV~AFksTLEE~~~aDlllh-VVDaSdp~~~~~~~~v~~vL~el-~~~~-~p~i~v~NKiD~~~~~~-------~~~  324 (411)
T COG2262         255 PHPLVEAFKSTLEEVKEADLLLH-VVDASDPEILEKLEAVEDVLAEI-GADE-IPIILVLNKIDLLEDEE-------ILA  324 (411)
T ss_pred             ChHHHHHHHHHHHHhhcCCEEEE-EeecCChhHHHHHHHHHHHHHHc-CCCC-CCEEEEEecccccCchh-------hhh
Confidence            67888999999887788898665 55667774433322222333332 1111 66999999999987641       112


Q ss_pred             HHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          184 EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       184 ~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .+....|               ..+++||.+|.|++.|...|..
T Consensus       325 ~~~~~~~---------------~~v~iSA~~~~gl~~L~~~i~~  353 (411)
T COG2262         325 ELERGSP---------------NPVFISAKTGEGLDLLRERIIE  353 (411)
T ss_pred             hhhhcCC---------------CeEEEEeccCcCHHHHHHHHHH
Confidence            2221111               4678999999999999988764

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.54  E-value=9.7e-16  Score=129.13  Aligned_cols=195  Identities=18%  Similarity=0.247  Sum_probs=113.5

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec-c-hhH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV-K-HSL  107 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~-~~~  107 (263)
                      .+.--++++|.||+|||||.|.++    |.|++.++....||+....+++..++ .+.+  ++|+ ||.+.... + ..+
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mi----g~kv~~vS~K~~TTr~~ilgi~ts~e-TQlv--f~DT-PGlvs~~~~r~~~l  141 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMI----GQKVSAVSRKVHTTRHRILGIITSGE-TQLV--FYDT-PGLVSKKMHRRHHL  141 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhh----CCccccccccccceeeeeeEEEecCc-eEEE--EecC-CcccccchhhhHHH
Confidence            344579999999999999999999    99999999999988766666666543 3333  6777 66654221 1 111


Q ss_pred             -HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhccc----ccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHH
Q 024744          108 -VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDD----QLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELE  182 (263)
Q Consensus       108 -~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~----~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~  182 (263)
                       ...++..-.....+|.+++    +.|.+.-  -..+++    .+..+..    ++.++|+||+|.+....   .+-.+.
T Consensus       142 ~~s~lq~~~~a~q~AD~vvV----v~Das~t--r~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~k~---~Ll~l~  208 (379)
T KOG1423|consen  142 MMSVLQNPRDAAQNADCVVV----VVDASAT--RTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQKR---LLLNLK  208 (379)
T ss_pred             HHHhhhCHHHHHhhCCEEEE----EEeccCC--cCccChHHHHHHHHHhc----CCceeeccchhcchhhh---HHhhhH
Confidence             1122222222257898888    4444320  001112    1222223    44888999999776532   111222


Q ss_pred             HH------------HHhhc---CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh-----hhccCCCCCCCCCCEE
Q 024744          183 KE------------IHEIN---SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE-----EHQYKSSQNLHDNNVR  242 (263)
Q Consensus       183 ~~------------l~~~~---p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~-----~~~~~~~~~~~~~~i~  242 (263)
                      +.            +++.+   |......+.-+--.|+++|.+||++|+|++++.++|-     +++.|+.+..+++.-+
T Consensus       209 ~~Lt~g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e  288 (379)
T KOG1423|consen  209 DLLTNGELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPE  288 (379)
T ss_pred             HhccccccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHH
Confidence            22            22222   2111222222222378999999999999999999886     3455665555554444


Q ss_pred             EEE
Q 024744          243 TLS  245 (263)
Q Consensus       243 ~~~  245 (263)
                      .++
T Consensus       289 ~l~  291 (379)
T KOG1423|consen  289 FLC  291 (379)
T ss_pred             HHH
Confidence            433

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.53  E-value=1.1e-14  Score=129.88  Aligned_cols=155  Identities=22%  Similarity=0.242  Sum_probs=96.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH--H
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA--L  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~--l  111 (263)
                      -++|+|+||+|||||+|+|+    +...+||++-+|||+++....++-++  ..+ .++|+++ .   ....+..+.  +
T Consensus       219 kvvIiG~PNvGKSSLLNaL~----~~d~AIVTdI~GTTRDviee~i~i~G--~pv-~l~DTAG-i---Ret~d~VE~iGI  287 (454)
T COG0486         219 KVVIIGRPNVGKSSLLNALL----GRDRAIVTDIAGTTRDVIEEDINLNG--IPV-RLVDTAG-I---RETDDVVERIGI  287 (454)
T ss_pred             eEEEECCCCCcHHHHHHHHh----cCCceEecCCCCCccceEEEEEEECC--EEE-EEEecCC-c---ccCccHHHHHHH
Confidence            36799999999999999999    88889999999999887665555533  222 4567633 1   122333333  2


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ++-......+|+||+-.++....... +.....       ..+...+.++|+||+|+.+....    ..+     +..  
T Consensus       288 eRs~~~i~~ADlvL~v~D~~~~~~~~-d~~~~~-------~~~~~~~~i~v~NK~DL~~~~~~----~~~-----~~~--  348 (454)
T COG0486         288 ERAKKAIEEADLVLFVLDASQPLDKE-DLALIE-------LLPKKKPIIVVLNKADLVSKIEL----ESE-----KLA--  348 (454)
T ss_pred             HHHHHHHHhCCEEEEEEeCCCCCchh-hHHHHH-------hcccCCCEEEEEechhccccccc----chh-----hcc--
Confidence            22222336899999944433211111 111111       11222448999999999987521    111     111  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                                 +-..++.+||++|+|++.|.+.|....
T Consensus       349 -----------~~~~~i~iSa~t~~Gl~~L~~~i~~~~  375 (454)
T COG0486         349 -----------NGDAIISISAKTGEGLDALREAIKQLF  375 (454)
T ss_pred             -----------CCCceEEEEecCccCHHHHHHHHHHHH
Confidence                       111478899999999999998887543

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.51  E-value=2.9e-14  Score=120.88  Aligned_cols=168  Identities=20%  Similarity=0.196  Sum_probs=90.1

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee--cchhHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--VKHSLV  108 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~--~~~~~~  108 (263)
                      .++-++++||||||||||+|+|..+.+    .|-...|.| +......+...+..+  ..+.|+ ||.+-.+  .++.-.
T Consensus       195 siadvGLVG~PNAGKSTLL~als~AKp----kVa~YaFTT-L~P~iG~v~yddf~q--~tVADi-PGiI~GAh~nkGlG~  266 (366)
T KOG1489|consen  195 SIADVGLVGFPNAGKSTLLNALSRAKP----KVAHYAFTT-LRPHIGTVNYDDFSQ--ITVADI-PGIIEGAHMNKGLGY  266 (366)
T ss_pred             eecccceecCCCCcHHHHHHHhhccCC----cccccceee-eccccceeeccccce--eEeccC-ccccccccccCcccH
Confidence            444688999999999999999996543    343444432 333333233221111  245666 6665432  233334


Q ss_pred             HHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI  188 (263)
Q Consensus       109 ~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~  188 (263)
                      +.|+.+-  +.+.=+.+++.++-....++.++..+..++..+-+...-.+.+||+||+|+.+.++     +.+.+..+.+
T Consensus       267 ~FLrHiE--R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~-----~~l~~L~~~l  339 (366)
T KOG1489|consen  267 KFLRHIE--RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK-----NLLSSLAKRL  339 (366)
T ss_pred             HHHHHHH--hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH-----HHHHHHHHHc
Confidence            4554442  23333334444443222444433222233322212222245899999999975431     1223322222


Q ss_pred             cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ..              ..++++||++++|+.+|.+.+++
T Consensus       340 q~--------------~~V~pvsA~~~egl~~ll~~lr~  364 (366)
T KOG1489|consen  340 QN--------------PHVVPVSAKSGEGLEELLNGLRE  364 (366)
T ss_pred             CC--------------CcEEEeeeccccchHHHHHHHhh
Confidence            11              14789999999999999887654

>PRK11058 GTPase HflX; Provisional

Probab=99.50  E-value=2e-13  Score=124.01  Aligned_cols=167  Identities=20%  Similarity=0.241  Sum_probs=93.8

Q ss_pred             CcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHH
Q 024744           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (263)
Q Consensus        29 ~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~  108 (263)
                      ...+|.|+|+|++|||||||+|+|+    +.++. +.+.+++|++.....+...+...  ..++|+ +|.+ ......+.
T Consensus       194 ~~~~p~ValVG~~NaGKSSLlN~Lt----~~~~~-v~~~~~tTld~~~~~i~l~~~~~--~~l~DT-aG~~-r~lp~~lv  264 (426)
T PRK11058        194 KADVPTVSLVGYTNAGKSTLFNRIT----EARVY-AADQLFATLDPTLRRIDVADVGE--TVLADT-VGFI-RHLPHDLV  264 (426)
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHh----CCcee-eccCCCCCcCCceEEEEeCCCCe--EEEEec-Cccc-ccCCHHHH
Confidence            3466889999999999999999999    65655 56667766654433333222111  136777 4431 22234444


Q ss_pred             HHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI  188 (263)
Q Consensus       109 ~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~  188 (263)
                      +.+...+.....+|.+++-.+ ..+|............+... .. .-++.++|+||+|+.+...     ..+..  ...
T Consensus       265 e~f~~tl~~~~~ADlIL~VvD-aS~~~~~e~l~~v~~iL~el-~~-~~~pvIiV~NKiDL~~~~~-----~~~~~--~~~  334 (426)
T PRK11058        265 AAFKATLQETRQATLLLHVVD-AADVRVQENIEAVNTVLEEI-DA-HEIPTLLVMNKIDMLDDFE-----PRIDR--DEE  334 (426)
T ss_pred             HHHHHHHHHhhcCCEEEEEEe-CCCccHHHHHHHHHHHHHHh-cc-CCCCEEEEEEcccCCCchh-----HHHHH--Hhc
Confidence            555555544467888877433 34443222111001111111 10 1145899999999975421     11110  000


Q ss_pred             cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                                    +....+.+||++|.|+++|.+++...
T Consensus       335 --------------~~~~~v~ISAktG~GIdeL~e~I~~~  360 (426)
T PRK11058        335 --------------NKPIRVWLSAQTGAGIPLLFQALTER  360 (426)
T ss_pred             --------------CCCceEEEeCCCCCCHHHHHHHHHHH
Confidence                          11124679999999999999888753

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.49  E-value=1.1e-13  Score=121.99  Aligned_cols=166  Identities=17%  Similarity=0.153  Sum_probs=87.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecc-hhHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK-HSLVQALE  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~l~  112 (263)
                      =|+|+|+||||||||||+|+.    .+.. +.+.+++|+......+.... ... ..++|+ +|.+-.... ..+.....
T Consensus       160 dVglVG~PNaGKSTLln~ls~----a~~~-va~ypfTT~~p~~G~v~~~~-~~~-~~i~D~-PGli~ga~~~~gLg~~fl  231 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSA----AKPK-IADYPFTTLHPNLGVVRVDD-YKS-FVIADI-PGLIEGASEGAGLGHRFL  231 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHc----CCCc-cCCCCCceeCceEEEEEeCC-CcE-EEEEeC-CCccCCCCccccHHHHHH
Confidence            489999999999999999994    3433 45556666766555554321 111 146788 555322211 11222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      +.+   ...+.+++-. .+.++..+.+...+...+..+......++.++|+||+|+.+....  ..+..+...+..+   
T Consensus       232 rhi---e~a~vlI~Vi-D~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~--~~~~~~~~~~~~~---  302 (335)
T PRK12299        232 KHI---ERTRLLLHLV-DIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE--REKRAALELAALG---  302 (335)
T ss_pred             HHh---hhcCEEEEEE-cCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH--HHHHHHHHHHhcC---
Confidence            222   3456655522 233322222211112222221110012468999999999865421  0111111111110   


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                                  .+++++||++++|++++..++...
T Consensus       303 ------------~~i~~iSAktg~GI~eL~~~L~~~  326 (335)
T PRK12299        303 ------------GPVFLISAVTGEGLDELLRALWEL  326 (335)
T ss_pred             ------------CCEEEEEcCCCCCHHHHHHHHHHH
Confidence                        247889999999999999888653

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.47  E-value=2.8e-13  Score=125.15  Aligned_cols=186  Identities=20%  Similarity=0.176  Sum_probs=100.3

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee---cchhH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT---VKHSL  107 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~---~~~~~  107 (263)
                      ..+-++++|.+|+|||||+|+|+    +....++++.+|+|++.....+...  +..+ .++|+ +|..-..   ...+.
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~----~~~~~~~s~~~gtT~d~~~~~~~~~--~~~~-~l~DT-aG~~~~~~~~~~~e~  281 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLA----GEERSVVDDVAGTTVDPVDSLIELG--GKTW-RFVDT-AGLRRRVKQASGHEY  281 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHh----CCCcccccCCCCccCCcceEEEEEC--CEEE-EEEEC-CCccccccccchHHH
Confidence            34678999999999999999999    5555667788887654333223222  1222 46787 4421000   00112


Q ss_pred             HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      ...+.... ....+|.+++-.+.. ++....+...+. .+..     .-++.++|+||+|+.+...    ...+...++.
T Consensus       282 ~~~~~~~~-~i~~ad~vilV~Da~-~~~s~~~~~~~~-~~~~-----~~~piIiV~NK~Dl~~~~~----~~~~~~~i~~  349 (472)
T PRK03003        282 YASLRTHA-AIEAAEVAVVLIDAS-EPISEQDQRVLS-MVIE-----AGRALVLAFNKWDLVDEDR----RYYLEREIDR  349 (472)
T ss_pred             HHHHHHHH-HHhcCCEEEEEEeCC-CCCCHHHHHHHH-HHHH-----cCCCEEEEEECcccCChhH----HHHHHHHHHH
Confidence            22222111 114678877743322 221111111111 1111     1145899999999986431    2233333332


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEEEcCCCCCHHHHHhhhc
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIA  262 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~  262 (263)
                      ....          ..+.+++.+||++|.|++++...+.....                .+.+.+++++|++||+
T Consensus       350 ~l~~----------~~~~~~~~~SAk~g~gv~~lf~~i~~~~~----------------~~~~~i~t~~ln~~~~  398 (472)
T PRK03003        350 ELAQ----------VPWAPRVNISAKTGRAVDKLVPALETALE----------------SWDTRIPTGRLNAWLG  398 (472)
T ss_pred             hccc----------CCCCCEEEEECCCCCCHHHHHHHHHHHHH----------------HhcccCCHHHHHHHHH
Confidence            2111          12346788999999999999887754221                1233466777777765

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.47  E-value=3.4e-13  Score=117.64  Aligned_cols=185  Identities=22%  Similarity=0.210  Sum_probs=96.8

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccc---c--chhhhhc-C-CCCcceeeeeeecCcceEe
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIG---V--ERAMINE-G-EGGALVEEWVELANGCICC  101 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~---~--d~~~~~~-~-~~~~~~~~~~~l~~g~~~~  101 (263)
                      ...+++|+|++|||||||++.|...  ..|.+++++..|+.....   +  +...+.. . ..+.   .+..+++.|...
T Consensus        33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  109 (300)
T TIGR00750        33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGA---FIRSMPTRGHLG  109 (300)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCc---eeeecCcccccc
Confidence            3468999999999999999999764  458899999999765221   1  1101110 0 0111   122232222111


Q ss_pred             ecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhH-HHHh---h-c-----ccccccceeeCeEEeeEEEEecCCCCCC
Q 024744          102 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPL-ASVL---W-L-----DDQLESAVRLDSIITDVVILNKVDLVSP  171 (263)
Q Consensus       102 ~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~-~~~~---~-~-----~~~l~~~~~~~~~i~~iivlNK~Dl~~~  171 (263)
                      .........+.. +. ...+|+||+||+|+..+... .+..   . .     .+.+......-..+++++++||+|+...
T Consensus       110 ~~~~~~~~~~~~-l~-~~g~D~viidT~G~~~~e~~i~~~aD~i~vv~~~~~~~el~~~~~~l~~~~~ivv~NK~Dl~~~  187 (300)
T TIGR00750       110 GLSQATRELILL-LD-AAGYDVIIVETVGVGQSEVDIANMADTFVVVTIPGTGDDLQGIKAGLMEIADIYVVNKADGEGA  187 (300)
T ss_pred             chhHHHHHHHHH-HH-hCCCCEEEEeCCCCchhhhHHHHhhceEEEEecCCccHHHHHHHHHHhhhccEEEEEcccccch
Confidence            111112223333 32 36899999999998765432 1110   0 0     0001111010112458999999999865


Q ss_pred             CCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          172 ERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       172 ~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      .........+...+..+....        ..+..+++++||.+|+|+++|.+++..+
T Consensus       188 ~~~~~~~~~~~~~l~~l~~~~--------~~~~~~v~~iSA~~g~Gi~~L~~~i~~~  236 (300)
T TIGR00750       188 TNVTIARLMLALALEEIRRRE--------DGWRPPVLTTSAVEGRGIDELWDAIEEH  236 (300)
T ss_pred             hHHHHHHHHHHHHHhhccccc--------cCCCCCEEEEEccCCCCHHHHHHHHHHH
Confidence            411000001111222221110        0011257899999999999999988764

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.46  E-value=4.3e-13  Score=119.10  Aligned_cols=163  Identities=20%  Similarity=0.295  Sum_probs=92.7

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ...+.|+++|++|||||||+|+|+    +.+ .++.+.+++|++.....+...+ +.. ..++|+ +|.+ .....++.+
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~----~~~-~~v~~~~~tT~d~~~~~i~~~~-~~~-i~l~DT-~G~~-~~l~~~lie  257 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALT----GAD-VYAADQLFATLDPTTRRLDLPD-GGE-VLLTDT-VGFI-RDLPHELVA  257 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHh----CCc-eeeccCCccccCCEEEEEEeCC-Cce-EEEEec-Cccc-ccCCHHHHH
Confidence            355789999999999999999999    554 4556666766655433333311 111 246777 4431 222344445


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      .++..+.....+|.+++-.+. .+|....+.......+... ... -++.++|+||+|+.+..       .+.. +..  
T Consensus       258 ~f~~tle~~~~ADlil~VvD~-s~~~~~~~~~~~~~~L~~l-~~~-~~piIlV~NK~Dl~~~~-------~v~~-~~~--  324 (351)
T TIGR03156       258 AFRATLEEVREADLLLHVVDA-SDPDREEQIEAVEKVLEEL-GAE-DIPQLLVYNKIDLLDEP-------RIER-LEE--  324 (351)
T ss_pred             HHHHHHHHHHhCCEEEEEEEC-CCCchHHHHHHHHHHHHHh-ccC-CCCEEEEEEeecCCChH-------hHHH-HHh--
Confidence            555554444578888774443 3443221111001111111 110 14589999999997642       1111 111  


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .             ..+++.+||++|.|+++|.+++..
T Consensus       325 ~-------------~~~~i~iSAktg~GI~eL~~~I~~  349 (351)
T TIGR03156       325 G-------------YPEAVFVSAKTGEGLDLLLEAIAE  349 (351)
T ss_pred             C-------------CCCEEEEEccCCCCHHHHHHHHHh
Confidence            0             113678999999999999988753

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.45  E-value=5.9e-13  Score=107.43  Aligned_cols=170  Identities=18%  Similarity=0.179  Sum_probs=90.9

Q ss_pred             eEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCe-EEEEecCCCcccccchhhhhcCCCCcceeeeeeecCc
Q 024744           19 HEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANG   97 (263)
Q Consensus        19 ~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~-~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g   97 (263)
                      ++.-+.+.+...+.+-++|+|.+|+|||||+|+|++    .+ ++.+...+|+|..+......  .  .  ..++|+ +|
T Consensus         5 ~~~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~----~~~~~~~~~~~~~t~~~~~~~~~--~--~--~~liDt-pG   73 (179)
T TIGR03598         5 KSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTN----RKKLARTSKTPGRTQLINFFEVN--D--G--FRLVDL-PG   73 (179)
T ss_pred             eeeccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhC----CCCcccccCCCCcceEEEEEEeC--C--c--EEEEeC-CC
Confidence            444455666667778899999999999999999994    32 34445556655544322221  1  1  246787 55


Q ss_pred             ceEeec----chhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCC
Q 024744           98 CICCTV----KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPER  173 (263)
Q Consensus        98 ~~~~~~----~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~  173 (263)
                      ......    +..+...+...+......+.+++-.+.-..........  ...+.. .    -++.++++||+|+.++.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~--~~~~~~-~----~~pviiv~nK~D~~~~~~  146 (179)
T TIGR03598        74 YGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEM--LEWLRE-R----GIPVLIVLTKADKLKKSE  146 (179)
T ss_pred             CccccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHH--HHHHHH-c----CCCEEEEEECcccCCHHH
Confidence            322211    22233334444433334566666333222111111100  011111 1    145899999999986542


Q ss_pred             CcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhh
Q 024744          174 SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVT  219 (263)
Q Consensus       174 ~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~  219 (263)
                      .....+.+++.++...             ....++++||++|+|++
T Consensus       147 ~~~~~~~i~~~l~~~~-------------~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       147 LNKQLKKIKKALKKDA-------------DDPSVQLFSSLKKTGID  179 (179)
T ss_pred             HHHHHHHHHHHHhhcc-------------CCCceEEEECCCCCCCC
Confidence            2222344444443321             11268999999999874

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.45  E-value=2.8e-13  Score=122.57  Aligned_cols=160  Identities=19%  Similarity=0.184  Sum_probs=85.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecc-hhHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK-HSLVQALE  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~l~  112 (263)
                      -|+|+|+||||||||||+|++    .+..| .+.+++|+......+.... ... ..++|+ ||.+..... ..+..   
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~----ak~kI-a~ypfTTl~PnlG~v~~~~-~~~-~~laD~-PGliega~~~~gLg~---  228 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSN----AKPKI-ANYHFTTLVPNLGVVETDD-GRS-FVMADI-PGLIEGASEGVGLGH---  228 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHc----CCCcc-ccCCcceeceEEEEEEEeC-Cce-EEEEEC-CCCcccccccchHHH---
Confidence            699999999999999999994    34333 4555665655544443321 111 247888 665432221 11211   


Q ss_pred             HHHHhccCCcEEEEcccC--C--CCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744          113 QLVQRKERLDHILLETTG--L--ANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI  188 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G--~--~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~  188 (263)
                      ..+......+.+++-.+.  .  .+|...  ...+...+..+.....-++.+||+||+|+....      +.+.+..+.+
T Consensus       229 ~fLrhier~~llI~VID~s~~~~~dp~e~--~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~------e~l~~l~~~l  300 (424)
T PRK12297        229 QFLRHIERTRVIVHVIDMSGSEGRDPIED--YEKINKELKLYNPRLLERPQIVVANKMDLPEAE------ENLEEFKEKL  300 (424)
T ss_pred             HHHHHHhhCCEEEEEEeCCccccCChHHH--HHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH------HHHHHHHHHh
Confidence            222222345666653322  1  123221  111122222211100125689999999984331      2222222222


Q ss_pred             cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .               .+++++||++++|+++|..++.+
T Consensus       301 ~---------------~~i~~iSA~tgeGI~eL~~~L~~  324 (424)
T PRK12297        301 G---------------PKVFPISALTGQGLDELLYAVAE  324 (424)
T ss_pred             C---------------CcEEEEeCCCCCCHHHHHHHHHH
Confidence            1               14788999999999999888763

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.45  E-value=5.1e-14  Score=129.00  Aligned_cols=166  Identities=19%  Similarity=0.193  Sum_probs=91.6

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ..-++++|.+|+|||||+|+|+    +....++.+.+|+|+......+...  +.. ..++|+ +|........+..+..
T Consensus       173 ~~~v~ivG~~n~GKStlin~ll----~~~~~~~~~~~gtt~~~~~~~~~~~--~~~-~~lvDT-~G~~~~~~~~~~~e~~  244 (435)
T PRK00093        173 PIKIAIIGRPNVGKSSLINALL----GEERVIVSDIAGTTRDSIDTPFERD--GQK-YTLIDT-AGIRRKGKVTEGVEKY  244 (435)
T ss_pred             ceEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCceEEEEEEEEEEC--Cee-EEEEEC-CCCCCCcchhhHHHHH
Confidence            3468999999999999999999    5556777888887654322222221  111 246787 4421111001111111


Q ss_pred             --HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          112 --EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       112 --~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                        .+.......+|.+++-.+........ +... ...+..     .-.+.++++||+|+.+.+    ..+.+.+.++...
T Consensus       245 ~~~~~~~~~~~ad~~ilViD~~~~~~~~-~~~i-~~~~~~-----~~~~~ivv~NK~Dl~~~~----~~~~~~~~~~~~l  313 (435)
T PRK00093        245 SVIRTLKAIERADVVLLVIDATEGITEQ-DLRI-AGLALE-----AGRALVIVVNKWDLVDEK----TMEEFKKELRRRL  313 (435)
T ss_pred             HHHHHHHHHHHCCEEEEEEeCCCCCCHH-HHHH-HHHHHH-----cCCcEEEEEECccCCCHH----HHHHHHHHHHHhc
Confidence              11111124667777733332111111 1110 011111     114589999999998543    3455666665443


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +..          ...+++++||++|.|++++.+.+.
T Consensus       314 ~~~----------~~~~i~~~SA~~~~gv~~l~~~i~  340 (435)
T PRK00093        314 PFL----------DYAPIVFISALTGQGVDKLLEAID  340 (435)
T ss_pred             ccc----------cCCCEEEEeCCCCCCHHHHHHHHH
Confidence            322          345789999999999998887764

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.45  E-value=4e-13  Score=103.21  Aligned_cols=140  Identities=18%  Similarity=0.275  Sum_probs=85.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -+.++|+.|||||||+++|.+....         +..|..+.           +...++|+++..+.+.   .   ....
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~---------~~KTq~i~-----------~~~~~IDTPGEyiE~~---~---~y~a   56 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR---------YKKTQAIE-----------YYDNTIDTPGEYIENP---R---FYHA   56 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC---------cCccceeE-----------ecccEEECChhheeCH---H---HHHH
Confidence            4789999999999999999843110         01111110           1123566644333221   1   2233


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ++....++|.|++    +.+...-..  ...+.+...+.    .+.+-|+||+|+.+.+   .++++.++.|+..     
T Consensus        57 Li~ta~dad~V~l----l~dat~~~~--~~pP~fa~~f~----~pvIGVITK~Dl~~~~---~~i~~a~~~L~~a-----  118 (143)
T PF10662_consen   57 LIVTAQDADVVLL----LQDATEPRS--VFPPGFASMFN----KPVIGVITKIDLPSDD---ANIERAKKWLKNA-----  118 (143)
T ss_pred             HHHHHhhCCEEEE----EecCCCCCc--cCCchhhcccC----CCEEEEEECccCccch---hhHHHHHHHHHHc-----
Confidence            3333468899988    544443211  12333444443    3488899999999432   2467777777654     


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                               +..++|.+|+.+|+|+++|.+.|+
T Consensus       119 ---------G~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen  119 ---------GVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             ---------CCCCeEEEECCCCcCHHHHHHHHh
Confidence                     456789999999999999998875

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.44  E-value=2e-13  Score=131.90  Aligned_cols=167  Identities=17%  Similarity=0.120  Sum_probs=93.6

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee--c-chhH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--V-KHSL  107 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~--~-~~~~  107 (263)
                      ..+-++++|.+|||||||+|+|+    +.+..++.+.+|+|++.....+...+  ..+ .++|+ +|..--.  . ..+.
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~----~~~~~~v~~~~gtT~d~~~~~~~~~~--~~~-~liDT-aG~~~~~~~~~~~e~  520 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLT----HEERAVVNDLAGTTRDPVDEIVEIDG--EDW-LFIDT-AGIKRRQHKLTGAEY  520 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh----CccccccCCCCCCCcCcceeEEEECC--CEE-EEEEC-CCcccCcccchhHHH
Confidence            34688999999999999999999    66667778888886654333333322  112 36787 4421000  0 0111


Q ss_pred             HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      ...+.... .....|.+++-.+...... ..+.... ..+..     .-++.++|+||+|+.+..    ..+.+.+.++.
T Consensus       521 ~~~~r~~~-~i~~advvilViDat~~~s-~~~~~i~-~~~~~-----~~~piIiV~NK~DL~~~~----~~~~~~~~~~~  588 (712)
T PRK09518        521 YSSLRTQA-AIERSELALFLFDASQPIS-EQDLKVM-SMAVD-----AGRALVLVFNKWDLMDEF----RRQRLERLWKT  588 (712)
T ss_pred             HHHHHHHH-HhhcCCEEEEEEECCCCCC-HHHHHHH-HHHHH-----cCCCEEEEEEchhcCChh----HHHHHHHHHHH
Confidence            12222221 1246788777433321111 1111111 11111     114589999999998753    23445555544


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ..+.          +++.+++++||++|.|+++|.+.+.+
T Consensus       589 ~l~~----------~~~~~ii~iSAktg~gv~~L~~~i~~  618 (712)
T PRK09518        589 EFDR----------VTWARRVNLSAKTGWHTNRLAPAMQE  618 (712)
T ss_pred             hccC----------CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3222          24556788999999999999887654

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.43  E-value=3.5e-13  Score=115.64  Aligned_cols=166  Identities=20%  Similarity=0.226  Sum_probs=89.3

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee--cchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--VKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~--~~~~~~~~l~  112 (263)
                      |+++|+|||||||||+++..++    .-|-.+.|.| +...-..++......++  +.|+ ||.+-..  ..+.-.+.|+
T Consensus       162 VGLVG~PNaGKSTlls~vS~Ak----PKIadYpFTT-L~PnLGvV~~~~~~sfv--~ADI-PGLIEGAs~G~GLG~~FLr  233 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAK----PKIADYPFTT-LVPNLGVVRVDGGESFV--VADI-PGLIEGASEGVGLGLRFLR  233 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcC----CcccCCcccc-ccCcccEEEecCCCcEE--EecC-cccccccccCCCccHHHHH
Confidence            7899999999999999999553    3444555543 54444444431111111  4555 5555322  1222233444


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      .+-  +.+.=+.+|+.+..-...+..+...+..++..+-..-..++.+||+||+|++..+   +.++.+.+.+.+...+.
T Consensus       234 HIE--Rt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~---e~~~~~~~~l~~~~~~~  308 (369)
T COG0536         234 HIE--RTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE---EELEELKKALAEALGWE  308 (369)
T ss_pred             HHH--hhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH---HHHHHHHHHHHHhcCCC
Confidence            332  1233344555554432222222222233343332222225589999999966553   24566666666543322


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                   ..+.|||.+++|+++|...+.
T Consensus       309 -------------~~~~ISa~t~~g~~~L~~~~~  329 (369)
T COG0536         309 -------------VFYLISALTREGLDELLRALA  329 (369)
T ss_pred             -------------cceeeehhcccCHHHHHHHHH
Confidence                         122299999999988876554

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.43  E-value=3.3e-13  Score=123.72  Aligned_cols=162  Identities=18%  Similarity=0.166  Sum_probs=86.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSLVQALE  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~l~  112 (263)
                      -|+|+|+||||||||||+|+.    .+.. +.+.+++|+......+....  .. ..++|+ +|.+-.. ....+...  
T Consensus       161 dV~LVG~PNAGKSTLln~Ls~----akpk-IadypfTTl~P~lGvv~~~~--~~-f~laDt-PGliegas~g~gLg~~--  229 (500)
T PRK12296        161 DVGLVGFPSAGKSSLISALSA----AKPK-IADYPFTTLVPNLGVVQAGD--TR-FTVADV-PGLIPGASEGKGLGLD--  229 (500)
T ss_pred             eEEEEEcCCCCHHHHHHHHhc----CCcc-ccccCcccccceEEEEEECC--eE-EEEEEC-CCCccccchhhHHHHH--
Confidence            589999999999999999994    4443 36667777765555554322  11 246788 5543211 11111111  


Q ss_pred             HHHHhccCCcEEEEcccC--C---CCchhHHHHhhccccccccee---------eCeEEeeEEEEecCCCCCCCCCcchH
Q 024744          113 QLVQRKERLDHILLETTG--L---ANPAPLASVLWLDDQLESAVR---------LDSIITDVVILNKVDLVSPERSGDSL  178 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G--~---~~p~~~~~~~~~~~~l~~~~~---------~~~~i~~iivlNK~Dl~~~~~~~~~~  178 (263)
                       ++......|.|++..+.  .   .+|....+  .+..++..+..         ....+|.+||+||+|+.+..+   ..
T Consensus       230 -fLrhieradvLv~VVD~s~~e~~rdp~~d~~--~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e---l~  303 (500)
T PRK12296        230 -FLRHIERCAVLVHVVDCATLEPGRDPLSDID--ALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE---LA  303 (500)
T ss_pred             -HHHHHHhcCEEEEEECCcccccccCchhhHH--HHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH---HH
Confidence             22212356776653222  1   12222111  11122221110         001256899999999975431   11


Q ss_pred             HHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          179 DELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       179 ~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +.+...+...              . -+++++||.+++|+++|..++.+
T Consensus       304 e~l~~~l~~~--------------g-~~Vf~ISA~tgeGLdEL~~~L~e  337 (500)
T PRK12296        304 EFVRPELEAR--------------G-WPVFEVSAASREGLRELSFALAE  337 (500)
T ss_pred             HHHHHHHHHc--------------C-CeEEEEECCCCCCHHHHHHHHHH
Confidence            2223233221              1 14789999999999999887763

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.42  E-value=4.8e-13  Score=114.31  Aligned_cols=162  Identities=20%  Similarity=0.282  Sum_probs=98.2

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      .+.|.++|.|+||+|||||+++|+    +.++-|-.+.|.| .++.-+-...+.   .-.+++|+ ||.+--.+.+.-.-
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT----~AkpEvA~YPFTT-K~i~vGhfe~~~---~R~QvIDT-PGlLDRPl~ErN~I  236 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLT----TAKPEVAPYPFTT-KGIHVGHFERGY---LRIQVIDT-PGLLDRPLEERNEI  236 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHh----cCCCccCCCCccc-cceeEeeeecCC---ceEEEecC-CcccCCChHHhcHH
Confidence            367899999999999999999999    6666777777765 565544343321   11368898 77653322222111


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhH-----HHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHH
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPL-----ASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKE  184 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~-----~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~  184 (263)
                      ..+.++..+.-.+.|++    +.||++.     .+...+..++...+.    .+.++|+||+|..+.+    .++++...
T Consensus       237 E~qAi~AL~hl~~~IlF----~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~e----~~~~~~~~  304 (346)
T COG1084         237 ERQAILALRHLAGVILF----LFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADEE----KLEEIEAS  304 (346)
T ss_pred             HHHHHHHHHHhcCeEEE----EEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccchh----HHHHHHHH
Confidence            22223222345677887    7777653     112222233444444    3489999999999775    34555555


Q ss_pred             HHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          185 IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       185 l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +...              +..+.+.+++..+.+.+.+...+.
T Consensus       305 ~~~~--------------~~~~~~~~~~~~~~~~d~~~~~v~  332 (346)
T COG1084         305 VLEE--------------GGEEPLKISATKGCGLDKLREEVR  332 (346)
T ss_pred             HHhh--------------ccccccceeeeehhhHHHHHHHHH
Confidence            4332              223456778888888776665443

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.41  E-value=5.3e-13  Score=122.06  Aligned_cols=167  Identities=20%  Similarity=0.187  Sum_probs=91.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH-
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL-  111 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l-  111 (263)
                      .-++++|.+|+|||||+|+|+    +....++...+|+|+......+...+  .. ..++|+ +|..-.....+..+.. 
T Consensus       173 ~~v~ivG~~~~GKSsLin~l~----~~~~~~~~~~~gtt~~~~~~~~~~~~--~~-~~liDT-~G~~~~~~~~~~~e~~~  244 (429)
T TIGR03594       173 IKIAIIGRPNVGKSTLVNALL----GEERVIVSDIAGTTRDSIDIPFERNG--KK-YLLIDT-AGIRRKGKVTEGVEKYS  244 (429)
T ss_pred             eEEEEECCCCCCHHHHHHHHH----CCCeeecCCCCCceECcEeEEEEECC--cE-EEEEEC-CCccccccchhhHHHHH
Confidence            468899999999999999999    55556677778876543222222211  11 246777 3421100000011111 


Q ss_pred             -HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          112 -EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       112 -~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                       .+.......+|.+++-.+.. ++....+.... ..+..     .-++.++|+||+|+++..   ..++.+.+.++...+
T Consensus       245 ~~~~~~~~~~ad~~ilV~D~~-~~~~~~~~~~~-~~~~~-----~~~~iiiv~NK~Dl~~~~---~~~~~~~~~~~~~~~  314 (429)
T TIGR03594       245 VLRTLKAIERADVVLLVLDAT-EGITEQDLRIA-GLILE-----AGKALVIVVNKWDLVKDE---KTREEFKKELRRKLP  314 (429)
T ss_pred             HHHHHHHHHhCCEEEEEEECC-CCccHHHHHHH-HHHHH-----cCCcEEEEEECcccCCCH---HHHHHHHHHHHHhcc
Confidence             11111124678877744332 22111111111 11111     114589999999998321   245666666665443


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ..          ...+++++||++|.|++++.+++..
T Consensus       315 ~~----------~~~~vi~~SA~~g~~v~~l~~~i~~  341 (429)
T TIGR03594       315 FL----------DFAPIVFISALTGQGVDKLLDAIDE  341 (429)
T ss_pred             cC----------CCCceEEEeCCCCCCHHHHHHHHHH
Confidence            22          3456889999999999998887654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.39  E-value=1.7e-12  Score=114.39  Aligned_cols=164  Identities=21%  Similarity=0.212  Sum_probs=85.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecc-hhHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK-HSLVQALE  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~l~  112 (263)
                      -|+|+|+||||||||+|+|+..    +. .+.+.+.+|+......+.... ... ..++|+ +|.+-.... ..+.....
T Consensus       159 dV~lvG~pnaGKSTLl~~lt~~----~~-~va~y~fTT~~p~ig~v~~~~-~~~-~~i~D~-PGli~~a~~~~gLg~~fl  230 (329)
T TIGR02729       159 DVGLVGLPNAGKSTLISAVSAA----KP-KIADYPFTTLVPNLGVVRVDD-GRS-FVIADI-PGLIEGASEGAGLGHRFL  230 (329)
T ss_pred             cEEEEcCCCCCHHHHHHHHhcC----Cc-cccCCCCCccCCEEEEEEeCC-ceE-EEEEeC-CCcccCCcccccHHHHHH
Confidence            5899999999999999999943    32 234445555544443333221 111 246788 665422211 11222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCc---hhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          113 QLVQRKERLDHILLETTGLANP---APLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p---~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      +.+   ...+.+++..+ +.+.   .++.+...+..++..+......++.+||+||+|+.++.    ..+++.+.+.+..
T Consensus       231 rhi---erad~ll~VvD-~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~----~~~~~~~~l~~~~  302 (329)
T TIGR02729       231 KHI---ERTRVLLHLID-ISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEE----ELAELLKELKKAL  302 (329)
T ss_pred             HHH---HhhCEEEEEEc-CccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChH----HHHHHHHHHHHHc
Confidence            222   24566655332 3322   11111111112222211100124589999999998653    2233333333211


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .              .+++++||++++|++++..++..
T Consensus       303 ~--------------~~vi~iSAktg~GI~eL~~~I~~  326 (329)
T TIGR02729       303 G--------------KPVFPISALTGEGLDELLYALAE  326 (329)
T ss_pred             C--------------CcEEEEEccCCcCHHHHHHHHHH
Confidence            1              14788999999999999888754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01898 Obg Obg subfamily

Probab=99.39  E-value=1.1e-12  Score=104.39  Aligned_cols=164  Identities=21%  Similarity=0.198  Sum_probs=80.9

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSLVQALEQ  113 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~l~~  113 (263)
                      |+++|.+|||||||+|+|..    .+. .+...+++|.......+..... .. ..++|+ +|..-.. ....+...   
T Consensus         3 v~ivG~~~~GKStl~~~l~~----~~~-~v~~~~~~t~~~~~~~~~~~~~-~~-~~l~Dt-pG~~~~~~~~~~~~~~---   71 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISN----AKP-KIADYPFTTLVPNLGVVRVDDG-RS-FVVADI-PGLIEGASEGKGLGHR---   71 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhc----CCc-cccCCCccccCCcceEEEcCCC-Ce-EEEEec-CcccCcccccCCchHH---
Confidence            68999999999999999984    332 3334444444332222222111 01 246777 4431110 00111111   


Q ss_pred             HHHhccCCcEEEEcccCCCCc-hhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          114 LVQRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p-~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ........|.+++-.+ ..++ ............+........-.+.++|+||+|+.+....   .+.+...++..    
T Consensus        72 ~~~~~~~~d~vi~v~D-~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~---~~~~~~~~~~~----  143 (170)
T cd01898          72 FLRHIERTRLLLHVID-LSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL---FELLKELLKEL----  143 (170)
T ss_pred             HHHHHHhCCEEEEEEe-cCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh---HHHHHHHHhhC----
Confidence            1111235677666333 3444 2221111111111111100012458999999999876421   12222222211    


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                ...+++.+||+++.|++++.+++.+
T Consensus       144 ----------~~~~~~~~Sa~~~~gi~~l~~~i~~  168 (170)
T cd01898         144 ----------WGKPVFPISALTGEGLDELLRKLAE  168 (170)
T ss_pred             ----------CCCCEEEEecCCCCCHHHHHHHHHh
Confidence                      1124688999999999999888754

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.39  E-value=1.2e-12  Score=121.46  Aligned_cols=157  Identities=20%  Similarity=0.185  Sum_probs=107.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH-
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL-  111 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l-  111 (263)
                      ..++++|.||+|||||+|+|++.    + ..+.|-+|.|+....+.....+..   .+++|+ ||...-+.. ...+.+ 
T Consensus         4 ~~valvGNPNvGKTtlFN~LTG~----~-q~VgNwpGvTVEkkeg~~~~~~~~---i~ivDL-PG~YSL~~~-S~DE~Va   73 (653)
T COG0370           4 LTVALVGNPNVGKTTLFNALTGA----N-QKVGNWPGVTVEKKEGKLKYKGHE---IEIVDL-PGTYSLTAY-SEDEKVA   73 (653)
T ss_pred             ceEEEecCCCccHHHHHHHHhcc----C-ceecCCCCeeEEEEEEEEEecCce---EEEEeC-CCcCCCCCC-CchHHHH
Confidence            35899999999999999999943    3 366899998887776666654322   257888 665322211 112222 


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      .+.+ ...++|+|+-    +.|...+..-+++.-++.+. .    ++.++++|++|........-+.+++.+.|.     
T Consensus        74 r~~l-l~~~~D~ivn----VvDAtnLeRnLyltlQLlE~-g----~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LG-----  138 (653)
T COG0370          74 RDFL-LEGKPDLIVN----VVDATNLERNLYLTLQLLEL-G----IPMILALNMIDEAKKRGIRIDIEKLSKLLG-----  138 (653)
T ss_pred             HHHH-hcCCCCEEEE----EcccchHHHHHHHHHHHHHc-C----CCeEEEeccHhhHHhcCCcccHHHHHHHhC-----
Confidence            2333 2478999988    77777765544433333332 2    348999999999887665556677777762     


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +             +++++||++|+|++++.+.+.+
T Consensus       139 v-------------PVv~tvA~~g~G~~~l~~~i~~  161 (653)
T COG0370         139 V-------------PVVPTVAKRGEGLEELKRAIIE  161 (653)
T ss_pred             C-------------CEEEEEeecCCCHHHHHHHHHH
Confidence            2             4788999999999999887754

>cd04163 Era Era subfamily

Probab=99.38  E-value=6e-12  Score=98.91  Aligned_cols=163  Identities=21%  Similarity=0.315  Sum_probs=89.2

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      +...++++|++|||||||+|+++    +.+++++.+..+++...........  .. -..++|+ +|....  .......
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~liDt-pG~~~~--~~~~~~~   71 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALV----GQKISIVSPKPQTTRNRIRGIYTDD--DA-QIIFVDT-PGIHKP--KKKLGER   71 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHh----CCceEeccCCCCceeceEEEEEEcC--Ce-EEEEEEC-CCCCcc--hHHHHHH
Confidence            34679999999999999999999    6677777776655332222222111  11 1236776 553211  1111112


Q ss_pred             HHHHH-HhccCCcEEEEcccCCCCc-hhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744          111 LEQLV-QRKERLDHILLETTGLANP-APLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI  188 (263)
Q Consensus       111 l~~~~-~~~~~~d~ilie~~G~~~p-~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~  188 (263)
                      +.... ......|.+++-.+ ..++ ......  ....+... .    .+.++++||+|+....   ..+.++.+.++..
T Consensus        72 ~~~~~~~~~~~~d~i~~v~d-~~~~~~~~~~~--~~~~~~~~-~----~~~iiv~nK~Dl~~~~---~~~~~~~~~~~~~  140 (168)
T cd04163          72 MVKAAWSALKDVDLVLFVVD-ASEPIGEGDEF--ILELLKKS-K----TPVILVLNKIDLVKDK---EDLLPLLEKLKEL  140 (168)
T ss_pred             HHHHHHHHHHhCCEEEEEEE-CCCccCchHHH--HHHHHHHh-C----CCEEEEEEchhccccH---HHHHHHHHHHHhc
Confidence            22121 11246677766333 2232 111111  11111111 1    3489999999998432   1334444445443


Q ss_pred             cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ++             ..+++.+|++++.|++++.+++.+
T Consensus       141 ~~-------------~~~~~~~s~~~~~~~~~l~~~l~~  166 (168)
T cd04163         141 GP-------------FAEIFPISALKGENVDELLEEIVK  166 (168)
T ss_pred             cC-------------CCceEEEEeccCCChHHHHHHHHh
Confidence            33             235788999999999999888754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.33  E-value=1.9e-12  Score=119.62  Aligned_cols=160  Identities=21%  Similarity=0.157  Sum_probs=90.1

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      ..|.|+|+|.+|+|||||+|+|+    +.+.+++.+.+|.|++.....+...+  .. ..++|+ +|..  .....+...
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~----~~~~~~v~~~~gvT~d~~~~~~~~~~--~~-~~l~DT-~G~~--~~~~~~~~~  106 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRIL----GRREAVVEDVPGVTRDRVSYDAEWNG--RR-FTVVDT-GGWE--PDAKGLQAS  106 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHh----CcCcccccCCCCCCEeeEEEEEEECC--cE-EEEEeC-CCcC--CcchhHHHH
Confidence            45889999999999999999999    66667778888865543332222211  11 246777 4421  111122233


Q ss_pred             HHHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          111 LEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       111 l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      +...... ...+|.+++-.++..........  +...+..     ..+|.++|+||+|+...+.      .... ...+ 
T Consensus       107 ~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~--i~~~l~~-----~~~piilV~NK~Dl~~~~~------~~~~-~~~~-  171 (472)
T PRK03003        107 VAEQAEVAMRTADAVLFVVDATVGATATDEA--VARVLRR-----SGKPVILAANKVDDERGEA------DAAA-LWSL-  171 (472)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCCHHHHH--HHHHHHH-----cCCCEEEEEECccCCccch------hhHH-HHhc-
Confidence            3333221 24689888854443221111111  1111211     1145999999999865321      1111 1111 


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                                   ++...+++||++|.|+++|.+++...
T Consensus       172 -------------g~~~~~~iSA~~g~gi~eL~~~i~~~  197 (472)
T PRK03003        172 -------------GLGEPHPVSALHGRGVGDLLDAVLAA  197 (472)
T ss_pred             -------------CCCCeEEEEcCCCCCcHHHHHHHHhh
Confidence                         23345789999999999999887643

>cd04171 SelB SelB subfamily

Probab=99.32  E-value=2.7e-12  Score=101.19  Aligned_cols=158  Identities=18%  Similarity=0.237  Sum_probs=78.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEec--CCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILN--EFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~--~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      +++++|.+|||||||+|+|++.    +......  ..+.|+........... ... ..++|+ +|-      ..+...+
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~----~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~-~~~~Dt-pG~------~~~~~~~   68 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGI----ETDRLPEEKKRGITIDLGFAYLDLPS-GKR-LGFIDV-PGH------EKFIKNM   68 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCc----ccccchhhhccCceEEeeeEEEEecC-CcE-EEEEEC-CCh------HHHHHHH
Confidence            5789999999999999999842    2122221  12322332222121110 111 256787 442      2222222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhH-HHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~-~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ..   ....+|.+++-.+........ .+.+.   .+. ..   ...+.++++||+|+.+........+++.+.++... 
T Consensus        69 ~~---~~~~ad~ii~V~d~~~~~~~~~~~~~~---~~~-~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~-  137 (164)
T cd04171          69 LA---GAGGIDLVLLVVAADEGIMPQTREHLE---ILE-LL---GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTF-  137 (164)
T ss_pred             Hh---hhhcCCEEEEEEECCCCccHhHHHHHH---HHH-Hh---CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcC-
Confidence            22   224678887733321111111 11110   011 01   11248899999999764211011233333333210 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                 ....+++++||++|.|++++.+.+.
T Consensus       138 -----------~~~~~~~~~Sa~~~~~v~~l~~~l~  162 (164)
T cd04171         138 -----------LADAPIFPVSAVTGEGIEELKEYLD  162 (164)
T ss_pred             -----------cCCCcEEEEeCCCCcCHHHHHHHHh
Confidence                       0123578999999999999987764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd01895 EngA2 EngA2 subfamily

Probab=99.30  E-value=2.6e-11  Score=96.14  Aligned_cols=165  Identities=20%  Similarity=0.228  Sum_probs=85.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEe-ecchhHHH--H
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC-TVKHSLVQ--A  110 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~-~~~~~~~~--~  110 (263)
                      .++++|.+|+|||||+|+|++    ....+..+.++++.......+...+  .. ..++++ +|..-- .....+..  .
T Consensus         4 ~i~i~G~~~~GKstli~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~iiDt-pG~~~~~~~~~~~e~~~~   75 (174)
T cd01895           4 RIAIIGRPNVGKSSLVNALLG----EERVIVSDIAGTTRDSIDVPFEYDG--KK-YTLIDT-AGIRRKGKVEEGIEKYSV   75 (174)
T ss_pred             EEEEEcCCCCCHHHHHHHHhC----ccceeccCCCCCccCceeeEEEECC--ee-EEEEEC-CCCccccchhccHHHHHH
Confidence            578999999999999999994    3334444555543322111122111  11 136777 443110 00111111  1


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      +... .....+|.+++-.+. .++........ ...+.. ..    .+.++++||+|+.+...  ...+.+.+.+++..+
T Consensus        76 ~~~~-~~~~~~d~vi~v~d~-~~~~~~~~~~~-~~~~~~-~~----~~~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~  145 (174)
T cd01895          76 LRTL-KAIERADVVLLVIDA-TEGITEQDLRI-AGLILE-EG----KALVIVVNKWDLVEKDS--KTMKEFKKEIRRKLP  145 (174)
T ss_pred             HHHH-HHHhhcCeEEEEEeC-CCCcchhHHHH-HHHHHh-cC----CCEEEEEeccccCCccH--HHHHHHHHHHHhhcc
Confidence            1111 112467777774432 22221111110 011111 01    45899999999987631  134555666655433


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      ..          ...+++++||+++.|++++...+.
T Consensus       146 ~~----------~~~~~~~~Sa~~~~~i~~~~~~l~  171 (174)
T cd01895         146 FL----------DYAPIVFISALTGQGVDKLFDAID  171 (174)
T ss_pred             cc----------cCCceEEEeccCCCCHHHHHHHHH
Confidence            21          234688999999999999887764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01878 HflX HflX subfamily

Probab=99.30  E-value=1.2e-11  Score=101.83  Aligned_cols=164  Identities=19%  Similarity=0.265  Sum_probs=82.7

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ...+.|+|+|++|||||||+|+++..    .. .+.+.++.|.......+.......  ..++|+ +|...+. ......
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~----~~-~~~~~~~~t~~~~~~~~~~~~~~~--~~i~Dt-~G~~~~~-~~~~~~  109 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGA----DV-YAEDQLFATLDPTTRRLRLPDGRE--VLLTDT-VGFIRDL-PHQLVE  109 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcc----hh-ccCCccceeccceeEEEEecCCce--EEEeCC-CccccCC-CHHHHH
Confidence            44578999999999999999999943    21 122222322322222222111111  245677 5542221 112222


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      .+.........+|.+++-.+ ..++............+... ... -++.++|+||+|+.+...    ..   .....  
T Consensus       110 ~~~~~~~~~~~~d~ii~v~D-~~~~~~~~~~~~~~~~l~~~-~~~-~~~viiV~NK~Dl~~~~~----~~---~~~~~--  177 (204)
T cd01878         110 AFRSTLEEVAEADLLLHVVD-ASDPDYEEQIETVEKVLKEL-GAE-DIPMILVLNKIDLLDDEE----LE---ERLEA--  177 (204)
T ss_pred             HHHHHHHHHhcCCeEEEEEE-CCCCChhhHHHHHHHHHHHc-CcC-CCCEEEEEEccccCChHH----HH---HHhhc--
Confidence            23333222346777776333 22332221110001111111 111 145899999999977531    11   11111  


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   ...+++.+||++|.|++++.++|..
T Consensus       178 -------------~~~~~~~~Sa~~~~gi~~l~~~L~~  202 (204)
T cd01878         178 -------------GRPDAVFISAKTGEGLDELLEAIEE  202 (204)
T ss_pred             -------------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence                         1235789999999999999888753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.29  E-value=7e-12  Score=121.30  Aligned_cols=160  Identities=20%  Similarity=0.223  Sum_probs=91.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-c--chhHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-V--KHSLVQ  109 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~--~~~~~~  109 (263)
                      ..++++|.||+|||||+|+|+    |.+. .+.+.+|+|+......+...  +.. ..++|+ ||..... .  .....+
T Consensus         4 ~~IaLvG~pNvGKSTLfN~Lt----g~~~-~vgn~pGvTve~k~g~~~~~--~~~-i~lvDt-PG~ysl~~~~~~~s~~E   74 (772)
T PRK09554          4 LTIGLIGNPNSGKTTLFNQLT----GARQ-RVGNWAGVTVERKEGQFSTT--DHQ-VTLVDL-PGTYSLTTISSQTSLDE   74 (772)
T ss_pred             eEEEEECCCCCCHHHHHHHHh----CCCC-ccCCCCCceEeeEEEEEEcC--ceE-EEEEEC-CCccccccccccccHHH
Confidence            468999999999999999998    4333 45777888765544444332  111 257888 5542211 0  112223


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      .+.+.......+|.+++    +.|........++..++.+. .    +|.++++||+|+.+......+.+++.+.   +.
T Consensus        75 ~i~~~~l~~~~aD~vI~----VvDat~ler~l~l~~ql~e~-g----iPvIvVlNK~Dl~~~~~i~id~~~L~~~---LG  142 (772)
T PRK09554         75 QIACHYILSGDADLLIN----VVDASNLERNLYLTLQLLEL-G----IPCIVALNMLDIAEKQNIRIDIDALSAR---LG  142 (772)
T ss_pred             HHHHHHHhccCCCEEEE----EecCCcchhhHHHHHHHHHc-C----CCEEEEEEchhhhhccCcHHHHHHHHHH---hC
Confidence            32222212357899887    44444332222211222221 2    5599999999987654321222222222   11


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                                     .+++++||.+|+|++++.+.+...
T Consensus       143 ---------------~pVvpiSA~~g~GIdeL~~~I~~~  166 (772)
T PRK09554        143 ---------------CPVIPLVSTRGRGIEALKLAIDRH  166 (772)
T ss_pred             ---------------CCEEEEEeecCCCHHHHHHHHHHh
Confidence                           147889999999999999887653

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.28  E-value=1.5e-11  Score=112.45  Aligned_cols=156  Identities=20%  Similarity=0.182  Sum_probs=92.1

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++|+|.+|+|||||+|+|+    +.+.+++.+.+|.|++.....+...+  .. ..++|+ +|..  .....+.+.+...
T Consensus         2 i~ivG~~nvGKStL~n~l~----~~~~~~v~~~~g~t~d~~~~~~~~~~--~~-~~liDT-pG~~--~~~~~~~~~~~~~   71 (429)
T TIGR03594         2 VAIVGRPNVGKSTLFNRLT----GKRDAIVSDTPGVTRDRKYGDAEWGG--RE-FILIDT-GGIE--EDDDGLDKQIREQ   71 (429)
T ss_pred             EEEECCCCCCHHHHHHHHh----CCCcceecCCCCcccCceEEEEEECC--eE-EEEEEC-CCCC--CcchhHHHHHHHH
Confidence            7899999999999999999    66667888888876544333333221  11 246787 4431  1222233444333


Q ss_pred             HHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          115 VQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       115 ~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ... ...+|.+++-.++..........  +...+.. ..    ++.++|+||+|+.+.+..   .    ..+.       
T Consensus        72 ~~~~~~~ad~vl~vvD~~~~~~~~d~~--i~~~l~~-~~----~piilVvNK~D~~~~~~~---~----~~~~-------  130 (429)
T TIGR03594        72 AEIAIEEADVILFVVDGREGLTPEDEE--IAKWLRK-SG----KPVILVANKIDGKKEDAV---A----AEFY-------  130 (429)
T ss_pred             HHHHHhhCCEEEEEEeCCCCCCHHHHH--HHHHHHH-hC----CCEEEEEECccCCccccc---H----HHHH-------
Confidence            322 24688888855543222221111  1111211 11    448999999998865421   1    1111       


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                             .+++.+++.+||.+|.|++++.+.+...
T Consensus       131 -------~lg~~~~~~vSa~~g~gv~~ll~~i~~~  158 (429)
T TIGR03594       131 -------SLGFGEPIPISAEHGRGIGDLLDAILEL  158 (429)
T ss_pred             -------hcCCCCeEEEeCCcCCChHHHHHHHHHh
Confidence                   1245578999999999999998887643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.28  E-value=8.1e-12  Score=99.10  Aligned_cols=163  Identities=18%  Similarity=0.187  Sum_probs=79.5

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|++|+|||||+++|...... ..+........|++.+...+...  ... ..++|+ +|-      ..+.......
T Consensus         2 i~~vG~~~~GKstLi~~l~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~--~~~-~~l~Dt-~G~------~~~~~~~~~~   70 (167)
T cd04160           2 VLILGLDNAGKTTFLEQLKTLFSK-YKGLPPSKITPTVGLNIGTIEVG--NAR-LKFWDL-GGQ------ESLRSLWDKY   70 (167)
T ss_pred             EEEEecCCCCHHHHHHHHhhhccc-ccCCcccccCCccccceEEEEEC--CEE-EEEEEC-CCC------hhhHHHHHHH
Confidence            679999999999999999743110 00011111122233222222221  111 245666 332      1222222222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                         ...+|.+++-.+ ..++..+.... ++...+... .. .-+|.++++||+|+.+..    ..+.+.+.++...... 
T Consensus        71 ---~~~~~~~v~vvd-~~~~~~~~~~~~~~~~~~~~~-~~-~~~p~ilv~NK~D~~~~~----~~~~~~~~~~~~~~~~-  139 (167)
T cd04160          71 ---YAECHAIIYVID-STDRERFEESKSALEKVLRNE-AL-EGVPLLILANKQDLPDAL----SVEEIKEVFQDKAEEI-  139 (167)
T ss_pred             ---hCCCCEEEEEEE-CchHHHHHHHHHHHHHHHhCh-hh-cCCCEEEEEEccccccCC----CHHHHHHHhccccccc-
Confidence               246777777222 23332222111 111111110 00 115589999999987653    2344444443321110 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                            +. ...+++.+||++|.|++++..||.
T Consensus       140 ------~~-~~~~~~~~Sa~~g~gv~e~~~~l~  165 (167)
T cd04160         140 ------GR-RDCLVLPVSALEGTGVREGIEWLV  165 (167)
T ss_pred             ------cC-CceEEEEeeCCCCcCHHHHHHHHh
Confidence                  00 112578899999999999998874

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01894 EngA1 EngA1 subfamily

Probab=99.28  E-value=8.5e-12  Score=97.54  Aligned_cols=154  Identities=21%  Similarity=0.216  Sum_probs=81.9

Q ss_pred             EEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHHH
Q 024744           36 VITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLV  115 (263)
Q Consensus        36 ~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~~  115 (263)
                      +++|.+|+|||||+|+|+    +.+...+.+.+++|...........  +.. ..++|+ +|....  ...+...+....
T Consensus         1 ~l~G~~~~GKssl~~~l~----~~~~~~~~~~~~~t~~~~~~~~~~~--~~~-~~i~Dt-pG~~~~--~~~~~~~~~~~~   70 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLT----GRRDAIVEDTPGVTRDRIYGEAEWG--GRE-FILIDT-GGIEPD--DEGISKEIREQA   70 (157)
T ss_pred             CccCCCCCCHHHHHHHHh----CCcEEeecCCCCceeCceeEEEEEC--CeE-EEEEEC-CCCCCc--hhHHHHHHHHHH
Confidence            478999999999999999    5555666666665443322222211  111 246777 443211  111222222221


Q ss_pred             -HhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744          116 -QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  194 (263)
Q Consensus       116 -~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i  194 (263)
                       ......|.+++-.+.. ++...... .+...+.. ..    .+.++|+||+|+.+...      . ...+..+      
T Consensus        71 ~~~~~~~d~ii~v~d~~-~~~~~~~~-~~~~~~~~-~~----~piiiv~nK~D~~~~~~------~-~~~~~~~------  130 (157)
T cd01894          71 ELAIEEADVILFVVDGR-EGLTPADE-EIAKYLRK-SK----KPVILVVNKVDNIKEED------E-AAEFYSL------  130 (157)
T ss_pred             HHHHHhCCEEEEEEecc-ccCCccHH-HHHHHHHh-cC----CCEEEEEECcccCChHH------H-HHHHHhc------
Confidence             1124678877744332 11111110 00111111 11    45899999999987531      1 2222222      


Q ss_pred             EEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                              +..+++.+|+++|.|++++.+++..
T Consensus       131 --------~~~~~~~~Sa~~~~gv~~l~~~l~~  155 (157)
T cd01894         131 --------GFGEPIPISAEHGRGIGDLLDAILE  155 (157)
T ss_pred             --------CCCCeEEEecccCCCHHHHHHHHHh
Confidence                    2235788999999999999887653

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=8.5e-12  Score=111.54  Aligned_cols=165  Identities=21%  Similarity=0.172  Sum_probs=93.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH--
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA--  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~--  110 (263)
                      +-++|+|+||+|||||+|+|+    ...++||++.+|+|++.....+..++  ..+ .+.|+++ .- - ...+..+.  
T Consensus       269 l~iaIvGrPNvGKSSLlNaL~----~~drsIVSpv~GTTRDaiea~v~~~G--~~v-~L~DTAG-iR-e-~~~~~iE~~g  338 (531)
T KOG1191|consen  269 LQIAIVGRPNVGKSSLLNALS----REDRSIVSPVPGTTRDAIEAQVTVNG--VPV-RLSDTAG-IR-E-ESNDGIEALG  338 (531)
T ss_pred             CeEEEEcCCCCCHHHHHHHHh----cCCceEeCCCCCcchhhheeEeecCC--eEE-EEEeccc-cc-c-ccCChhHHHh
Confidence            368899999999999999999    77889999999998865554454432  222 3456532 21 1 11122222  


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCch--------hHHHHhhccccccccee--eCeEEeeEEEEecCCCCCCCCCcchHHH
Q 024744          111 LEQLVQRKERLDHILLETTGLANPA--------PLASVLWLDDQLESAVR--LDSIITDVVILNKVDLVSPERSGDSLDE  180 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~--------~~~~~~~~~~~l~~~~~--~~~~i~~iivlNK~Dl~~~~~~~~~~~~  180 (263)
                      +++--++...+|+|++    +.|+.        .+.+.+. .....-...  .....+.+++.||.|+.+.-..      
T Consensus       339 I~rA~k~~~~advi~~----vvda~~~~t~sd~~i~~~l~-~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~------  407 (531)
T KOG1191|consen  339 IERARKRIERADVILL----VVDAEESDTESDLKIARILE-TEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE------  407 (531)
T ss_pred             HHHHHHHHhhcCEEEE----EecccccccccchHHHHHHH-HhccceEEEeccccccceEEEechhhccCcccc------
Confidence            2222223357899988    55541        1222211 000000000  0011348899999999876210      


Q ss_pred             HHHHHHhhcCCCeEEE-eecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          181 LEKEIHEINSLAHVIR-SVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       181 ~~~~l~~~~p~~~i~~-~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                              .++.++.. ...+.-.+.....+|+.+++|..+|...+.
T Consensus       408 --------~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all  446 (531)
T KOG1191|consen  408 --------MTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALL  446 (531)
T ss_pred             --------ccCCceeccccccCcccceEEEeeechhhhHHHHHHHHH
Confidence                    12322221 112222334455689999999999987765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.27  E-value=8.6e-12  Score=120.61  Aligned_cols=160  Identities=23%  Similarity=0.182  Sum_probs=93.0

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ...+.|+|+|.||+|||||+|+|+    +.+.+++.+.+|.|++.........  +.. ..++|+ +|...  ....+..
T Consensus       273 ~~~~~V~IvG~~nvGKSSL~n~l~----~~~~~iv~~~pGvT~d~~~~~~~~~--~~~-~~liDT-~G~~~--~~~~~~~  342 (712)
T PRK09518        273 KAVGVVAIVGRPNVGKSTLVNRIL----GRREAVVEDTPGVTRDRVSYDAEWA--GTD-FKLVDT-GGWEA--DVEGIDS  342 (712)
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCeeEEEEEEEEEEC--CEE-EEEEeC-CCcCC--CCccHHH
Confidence            345789999999999999999999    6677888888887654432222221  111 246777 44321  1122333


Q ss_pred             HHHHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744          110 ALEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI  188 (263)
Q Consensus       110 ~l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~  188 (263)
                      .+...... ...+|.+++-.++-....+....+  ...+..     .-++.++|+||+|+.+..      ....+.. . 
T Consensus       343 ~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i--~~~Lr~-----~~~pvIlV~NK~D~~~~~------~~~~~~~-~-  407 (712)
T PRK09518        343 AIASQAQIAVSLADAVVFVVDGQVGLTSTDERI--VRMLRR-----AGKPVVLAVNKIDDQASE------YDAAEFW-K-  407 (712)
T ss_pred             HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHH--HHHHHh-----cCCCEEEEEECcccccch------hhHHHHH-H-
Confidence            33333221 247899988555432222221111  111211     114599999999986542      1111111 1 


Q ss_pred             cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   .++...+++||.+|.|+++|.+++..
T Consensus       408 -------------lg~~~~~~iSA~~g~GI~eLl~~i~~  433 (712)
T PRK09518        408 -------------LGLGEPYPISAMHGRGVGDLLDEALD  433 (712)
T ss_pred             -------------cCCCCeEEEECCCCCCchHHHHHHHH
Confidence                         12334678999999999999888764

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.25  E-value=3.2e-11  Score=95.72  Aligned_cols=160  Identities=21%  Similarity=0.223  Sum_probs=77.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec--chhHH-H
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV--KHSLV-Q  109 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~--~~~~~-~  109 (263)
                      |.++++|.+|+|||||+|+++..    +.. +.+.+++|..+........  ... ..++|+ +|..-...  +..+. .
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~----~~~-~~~~~~~t~~~~~~~~~~~--~~~-~~i~Dt-~G~~~~~~~~~~~~~~~   71 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRA----KPE-VAPYPFTTKSLFVGHFDYK--YLR-WQVIDT-PGLLDRPLEERNTIEMQ   71 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcC----CCc-cCCCCCcccceeEEEEccC--ceE-EEEEEC-CCcCCccccCCchHHHH
Confidence            56899999999999999999953    221 1222333333322222111  111 256787 44311111  11111 1


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchh--HHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAP--LASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~--~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      .+..+   ....|.+++-.+ ..++..  ..........+....   ..++.++|+||+|+.+..+    .....+.. .
T Consensus        72 ~~~~~---~~~~d~~l~v~d-~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~~~----~~~~~~~~-~  139 (168)
T cd01897          72 AITAL---AHLRAAVLFLFD-PSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKIDLLTFED----LSEIEEEE-E  139 (168)
T ss_pred             HHHHH---HhccCcEEEEEe-CCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccccCchhh----HHHHHHhh-h
Confidence            11111   123455555222 121111  111111111222211   1255999999999986542    12211111 1


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .              ....++.+||++|.|++++.+++..
T Consensus       140 ~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~  165 (168)
T cd01897         140 L--------------EGEEVLKISTLTEEGVDEVKNKACE  165 (168)
T ss_pred             h--------------ccCceEEEEecccCCHHHHHHHHHH
Confidence            1              1125788999999999999988754

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.25  E-value=4.1e-11  Score=109.83  Aligned_cols=157  Identities=21%  Similarity=0.166  Sum_probs=91.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      +.|+|+|.+|+|||||+|+|+    +.+.+++...+|.|++.....+...+  .. ..++|+ +|...  ....+...+.
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~----~~~~~~v~~~~~~t~d~~~~~~~~~~--~~-~~liDT-~G~~~--~~~~~~~~~~   71 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLT----GKRDAIVADTPGVTRDRIYGEAEWLG--RE-FILIDT-GGIEP--DDDGFEKQIR   71 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHh----CCCceeeCCCCCCcccceEEEEEECC--cE-EEEEEC-CCCCC--cchhHHHHHH
Confidence            578999999999999999999    66667778878875544333333221  21 257888 55321  1111333333


Q ss_pred             HHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ..... ...+|.+++-.++..........+  ...+... .    ++.++|+||+|+.+.+      ....+. ..    
T Consensus        72 ~~~~~~~~~ad~il~vvd~~~~~~~~~~~~--~~~l~~~-~----~piilv~NK~D~~~~~------~~~~~~-~~----  133 (435)
T PRK00093         72 EQAELAIEEADVILFVVDGRAGLTPADEEI--AKILRKS-N----KPVILVVNKVDGPDEE------ADAYEF-YS----  133 (435)
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCCHHHHHH--HHHHHHc-C----CcEEEEEECccCccch------hhHHHH-Hh----
Confidence            33221 247899888555433222211111  1112111 1    4589999999976532      111111 11    


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                +++.+++++||.+|.|++++.+.+..
T Consensus       134 ----------lg~~~~~~iSa~~g~gv~~l~~~I~~  159 (435)
T PRK00093        134 ----------LGLGEPYPISAEHGRGIGDLLDAILE  159 (435)
T ss_pred             ----------cCCCCCEEEEeeCCCCHHHHHHHHHh
Confidence                      13345788999999999999988765

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.24  E-value=4.2e-11  Score=94.78  Aligned_cols=143  Identities=17%  Similarity=0.197  Sum_probs=78.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -|+++|.+|+|||||+|+|.+...   +   ....   ..+.     ....     .++|+ ||...+  ...+...+. 
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~~---~---~~~~---~~v~-----~~~~-----~~iDt-pG~~~~--~~~~~~~~~-   59 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNYT---L---ARKT---QAVE-----FNDK-----GDIDT-PGEYFS--HPRWYHALI-   59 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc---c---Cccc---eEEE-----ECCC-----CcccC-CccccC--CHHHHHHHH-
Confidence            488999999999999999884311   0   0111   1111     1000     14677 553222  122222222 


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                        .....+|.+++..+.- ++....     ...+... .  ...+.++++||+|+.+..     .+.+.+.+.....   
T Consensus        60 --~~~~~ad~il~v~d~~-~~~s~~-----~~~~~~~-~--~~~~ii~v~nK~Dl~~~~-----~~~~~~~~~~~~~---  120 (158)
T PRK15467         60 --TTLQDVDMLIYVHGAN-DPESRL-----PAGLLDI-G--VSKRQIAVISKTDMPDAD-----VAATRKLLLETGF---  120 (158)
T ss_pred             --HHHhcCCEEEEEEeCC-Cccccc-----CHHHHhc-c--CCCCeEEEEEccccCccc-----HHHHHHHHHHcCC---
Confidence              2235789988844432 221110     1111111 0  013478999999986532     3555555554422   


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                                ..+++.+||++|+|+++|.+.+.+.
T Consensus       121 ----------~~p~~~~Sa~~g~gi~~l~~~l~~~  145 (158)
T PRK15467        121 ----------EEPIFELNSHDPQSVQQLVDYLASL  145 (158)
T ss_pred             ----------CCCEEEEECCCccCHHHHHHHHHHh
Confidence                      1367889999999999999887653

>cd01861 Rab6 Rab6 subfamily

Probab=99.24  E-value=2.8e-11  Score=95.31  Aligned_cols=157  Identities=15%  Similarity=0.126  Sum_probs=79.4

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|++|||||||+++++..    +... ...++.+.+.....+...+.... ..++|+ +|.      ......+...
T Consensus         3 i~liG~~~~GKSsli~~l~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~-l~~~D~-~G~------~~~~~~~~~~   69 (161)
T cd01861           3 LVFLGDQSVGKTSIITRFMYD----TFDN-QYQATIGIDFLSKTMYLEDKTVR-LQLWDT-AGQ------ERFRSLIPSY   69 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHcC----CCCc-cCCCceeeeEEEEEEEECCEEEE-EEEEEC-CCc------HHHHHHHHHH
Confidence            679999999999999999843    2211 22222211111111111111111 246776 441      2333333333


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  194 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i  194 (263)
                      +   ...|.+++- .++.++..+......-..+...  ...-.+.++++||+|+.+..+.  ..+......+..+  .  
T Consensus        70 ~---~~~~~ii~v-~d~~~~~s~~~~~~~~~~~~~~--~~~~~~iilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~--  137 (161)
T cd01861          70 I---RDSSVAVVV-YDITNRQSFDNTDKWIDDVRDE--RGNDVIIVLVGNKTDLSDKRQV--STEEGEKKAKELN--A--  137 (161)
T ss_pred             h---ccCCEEEEE-EECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEEChhccccCcc--CHHHHHHHHHHhC--C--
Confidence            3   356666662 2344444332221111111111  1112569999999999654321  2233333332221  2  


Q ss_pred             EEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                 .++.+||.+|.|++++..++.+
T Consensus       138 -----------~~~~~Sa~~~~~v~~l~~~i~~  159 (161)
T cd01861         138 -----------MFIETSAKAGHNVKELFRKIAS  159 (161)
T ss_pred             -----------EEEEEeCCCCCCHHHHHHHHHH
Confidence                       3678999999999999988754

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.24  E-value=1.8e-11  Score=97.74  Aligned_cols=161  Identities=21%  Similarity=0.196  Sum_probs=77.5

Q ss_pred             EEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceE-eecchhHHHHHHHHH
Q 024744           37 ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKHSLVQALEQLV  115 (263)
Q Consensus        37 i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~-~~~~~~~~~~l~~~~  115 (263)
                      |+|++|||||||+|+|++    .+. .+.+.+++|.......+.... +.. ..++|+ +|..- ......+...+... 
T Consensus         1 iiG~~~~GKStll~~l~~----~~~-~~~~~~~~t~~~~~~~~~~~~-~~~-~~i~Dt-pG~~~~~~~~~~~~~~~~~~-   71 (176)
T cd01881           1 LVGLPNVGKSTLLNALTN----AKP-KVANYPFTTLEPNLGVVEVPD-GAR-IQVADI-PGLIEGASEGRGLGNQFLAH-   71 (176)
T ss_pred             CCCCCCCcHHHHHHHHhc----CCc-cccCCCceeecCcceEEEcCC-CCe-EEEEec-cccchhhhcCCCccHHHHHH-
Confidence            579999999999999994    333 233444444443332222210 111 256787 44211 01111111111112 


Q ss_pred             HhccCCcEEEEcccCCCCc------hhHHHHhhcccccccceee-----CeEEeeEEEEecCCCCCCCCCcchHHHHHHH
Q 024744          116 QRKERLDHILLETTGLANP------APLASVLWLDDQLESAVRL-----DSIITDVVILNKVDLVSPERSGDSLDELEKE  184 (263)
Q Consensus       116 ~~~~~~d~ilie~~G~~~p------~~~~~~~~~~~~l~~~~~~-----~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~  184 (263)
                        ....|.+++-.+. .++      ....+.......+......     ..-+|.++|+||+|+.+...    .......
T Consensus        72 --~~~~d~ii~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~----~~~~~~~  144 (176)
T cd01881          72 --IRRADAILHVVDA-SEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE----LEEELVR  144 (176)
T ss_pred             --HhccCEEEEEEec-cCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH----HHHHHHH
Confidence              2356776664443 222      1111111001111111000     01256899999999987642    1222111


Q ss_pred             HHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          185 IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       185 l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      .....             ....++.+||+++.|++++.+++.
T Consensus       145 ~~~~~-------------~~~~~~~~Sa~~~~gl~~l~~~l~  173 (176)
T cd01881         145 ELALE-------------EGAEVVPISAKTEEGLDELIRAIY  173 (176)
T ss_pred             HHhcC-------------CCCCEEEEehhhhcCHHHHHHHHH
Confidence            11111             123578899999999999887753

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.22  E-value=1.3e-11  Score=105.37  Aligned_cols=61  Identities=25%  Similarity=0.342  Sum_probs=41.9

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcce
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI   99 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~   99 (263)
                      .+-..++++|||++|||||+|+|+    +.+..+-..+|.| +....+++...+  +.+ +++++ ||.+
T Consensus        61 sGda~v~lVGfPsvGKStLL~~LT----nt~seva~y~FTT-l~~VPG~l~Y~g--a~I-Qild~-Pgii  121 (365)
T COG1163          61 SGDATVALVGFPSVGKSTLLNKLT----NTKSEVADYPFTT-LEPVPGMLEYKG--AQI-QLLDL-PGII  121 (365)
T ss_pred             cCCeEEEEEcCCCccHHHHHHHHh----CCCccccccCcee-cccccceEeecC--ceE-EEEcC-cccc
Confidence            344479999999999999999999    5555566677654 666666666543  322 45666 4443

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.22  E-value=5.7e-11  Score=96.84  Aligned_cols=165  Identities=18%  Similarity=0.215  Sum_probs=84.7

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCe-EEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec----c
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV----K  104 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~-~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~----~  104 (263)
                      -..+-++++|.+|||||||+|+|+.    .+ ++.+...+|.|+.+....+.     .. ..++|+ +|......    +
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~----~~~~~~~~~~~~~t~~~~~~~~~-----~~-l~l~Dt-pG~~~~~~~~~~~   90 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTN----RKNLARTSKTPGRTQLINFFEVN-----DK-LRLVDL-PGYGYAKVSKEEK   90 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhC----CCCcccccCCCCceeEEEEEecC-----Ce-EEEeCC-CCCCCcCCCchHH
Confidence            3556799999999999999999994    32 34445555654433321111     11 246777 44211111    2


Q ss_pred             hhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHH
Q 024744          105 HSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKE  184 (263)
Q Consensus       105 ~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~  184 (263)
                      ..+...+...+......+.+++-.+ ..++....... +...+.. ..    ++.++++||+|+.+..+    .+++...
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~v~d-~~~~~~~~~~~-i~~~l~~-~~----~~~iiv~nK~Dl~~~~~----~~~~~~~  159 (196)
T PRK00454         91 EKWQKLIEEYLRTRENLKGVVLLID-SRHPLKELDLQ-MIEWLKE-YG----IPVLIVLTKADKLKKGE----RKKQLKK  159 (196)
T ss_pred             HHHHHHHHHHHHhCccceEEEEEEe-cCCCCCHHHHH-HHHHHHH-cC----CcEEEEEECcccCCHHH----HHHHHHH
Confidence            2233333333332234455554222 11221111100 0111111 11    33788999999987542    2333333


Q ss_pred             HHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          185 IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       185 l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ++......           ...++++||++|.|++++.+++..
T Consensus       160 i~~~l~~~-----------~~~~~~~Sa~~~~gi~~l~~~i~~  191 (196)
T PRK00454        160 VRKALKFG-----------DDEVILFSSLKKQGIDELRAAIAK  191 (196)
T ss_pred             HHHHHHhc-----------CCceEEEEcCCCCCHHHHHHHHHH
Confidence            32221100           124678999999999999988764

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.22  E-value=9.4e-11  Score=90.59  Aligned_cols=138  Identities=17%  Similarity=0.216  Sum_probs=73.7

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|+|||||+|++++.    +..    ...+ ...+..           ..++++ +|..   .  ........+
T Consensus         3 v~liG~~~vGKSsL~~~l~~~----~~~----~~~t-~~~~~~-----------~~~iDt-~G~~---~--~~~~~~~~~   56 (142)
T TIGR02528         3 IMFIGSVGCGKTTLTQALQGE----EIL----YKKT-QAVEYN-----------DGAIDT-PGEY---V--ENRRLYSAL   56 (142)
T ss_pred             EEEECCCCCCHHHHHHHHcCC----ccc----cccc-eeEEEc-----------CeeecC-chhh---h--hhHHHHHHH
Confidence            689999999999999999843    221    1111 222210           135666 3321   0  011112222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  194 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i  194 (263)
                      ......+|.+++-.+ +.++......     .+.....    .+.++|+||+|+.+...   ..+...+.++..+     
T Consensus        57 ~~~~~~ad~vilv~d-~~~~~s~~~~-----~~~~~~~----~p~ilv~NK~Dl~~~~~---~~~~~~~~~~~~~-----  118 (142)
T TIGR02528        57 IVTAADADVIALVQS-ATDPESRFPP-----GFASIFV----KPVIGLVTKIDLAEADV---DIERAKELLETAG-----  118 (142)
T ss_pred             HHHhhcCCEEEEEec-CCCCCcCCCh-----hHHHhcc----CCeEEEEEeeccCCccc---CHHHHHHHHHHcC-----
Confidence            222357888888443 2333222111     1111111    25888999999975321   2333344443321     


Q ss_pred             EEeecCCCChhhhhccccCCcchhhhhhhhh
Q 024744          195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  225 (263)
Q Consensus       195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l  225 (263)
                               ..+++.+||++|.|++++..++
T Consensus       119 ---------~~~~~~~Sa~~~~gi~~l~~~l  140 (142)
T TIGR02528       119 ---------AEPIFEISSVDEQGLEALVDYL  140 (142)
T ss_pred             ---------CCcEEEEecCCCCCHHHHHHHH
Confidence                     2246889999999999998775

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.21  E-value=1.2e-10  Score=92.21  Aligned_cols=162  Identities=14%  Similarity=0.118  Sum_probs=80.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcC-CCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~-~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      |+++|+|.+|+|||||+|+|+...    +.. ....+.|.......+... ..... ..++|+ +|.      ..+....
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~----~~~-~~~~~~t~~~~~~~~~~~~~~~~~-~~iiDt-pG~------~~~~~~~   67 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTN----VAA-GEAGGITQHIGAFEVPAEVLKIPG-ITFIDT-PGH------EAFTNMR   67 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhcc----ccc-ccCCCeEEeeccEEEecccCCcce-EEEEeC-CCc------HHHHHHH
Confidence            679999999999999999998532    111 111122222111111111 01111 246787 442      1222211


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchh-HHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAP-LASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~-~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ...   ....|.+++-.+....... ....+   ..+.. ..    ++.++|+||+|+.+..     .+.+...++....
T Consensus        68 ~~~---~~~~d~il~v~d~~~~~~~~~~~~~---~~~~~-~~----~p~ivv~NK~Dl~~~~-----~~~~~~~~~~~~~  131 (168)
T cd01887          68 ARG---ASLTDIAILVVAADDGVMPQTIEAI---KLAKA-AN----VPFIVALNKIDKPNAN-----PERVKNELSELGL  131 (168)
T ss_pred             HHH---HhhcCEEEEEEECCCCccHHHHHHH---HHHHH-cC----CCEEEEEEceeccccc-----HHHHHHHHHHhhc
Confidence            111   1356777773332211111 11111   01111 11    4589999999987542     2344444443221


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      ..  .. ..+  ...+++++||.+|.|++++.+++..+
T Consensus       132 ~~--~~-~~~--~~~~~~~~Sa~~~~gi~~l~~~l~~~  164 (168)
T cd01887         132 QG--ED-EWG--GDVQIVPTSAKTGEGIDDLLEAILLL  164 (168)
T ss_pred             cc--cc-ccc--CcCcEEEeecccCCCHHHHHHHHHHh
Confidence            10  00 000  12357899999999999999988653

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01889 SelB_euk SelB subfamily

Probab=99.21  E-value=6.4e-11  Score=96.60  Aligned_cols=62  Identities=19%  Similarity=0.282  Sum_probs=38.5

Q ss_pred             eeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          158 TDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +.++++||+|+.+........+.+.+.++......       + ....+++++||++|.|+++|.+.+.+
T Consensus       122 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~-------~-~~~~~vi~iSa~~g~gi~~L~~~l~~  183 (192)
T cd01889         122 KLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT-------R-FKNSPIIPVSAKPGGGEAELGKDLNN  183 (192)
T ss_pred             CEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc-------C-cCCCCEEEEeccCCCCHHHHHHHHHh
Confidence            48899999999865422122344444443321100       0 01135789999999999999988765

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK04213 GTP-binding protein; Provisional

Probab=99.21  E-value=4.5e-11  Score=98.03  Aligned_cols=167  Identities=17%  Similarity=0.221  Sum_probs=80.9

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcc-eEeecc----hh
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGC-ICCTVK----HS  106 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~-~~~~~~----~~  106 (263)
                      .+-++++|.+|+|||||+|+|.+    .+. .....+|.|+...  .....  .   ..++|+ +|. ..-...    +.
T Consensus         9 ~~~i~i~G~~~~GKSsLin~l~~----~~~-~~~~~~~~t~~~~--~~~~~--~---~~l~Dt-~G~~~~~~~~~~~~~~   75 (201)
T PRK04213          9 KPEIVFVGRSNVGKSTLVRELTG----KKV-RVGKRPGVTRKPN--HYDWG--D---FILTDL-PGFGFMSGVPKEVQEK   75 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC----CCC-ccCCCCceeeCce--EEeec--c---eEEEeC-CccccccccCHHHHHH
Confidence            35689999999999999999984    322 2334455433221  11111  1   246787 442 111111    22


Q ss_pred             HHHHHHHHHH-hccCCcEEEEcccCCCCchhHHHH--hhc-------ccccccceeeCeEEeeEEEEecCCCCCCCCCcc
Q 024744          107 LVQALEQLVQ-RKERLDHILLETTGLANPAPLASV--LWL-------DDQLESAVRLDSIITDVVILNKVDLVSPERSGD  176 (263)
Q Consensus       107 ~~~~l~~~~~-~~~~~d~ilie~~G~~~p~~~~~~--~~~-------~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~  176 (263)
                      +...+..... .....+.+++    +.|+......  .+.       +..+...... .-++.++|+||+|+.+..  ..
T Consensus        76 ~~~~~~~~~~~~~~~~~~vi~----v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~p~iiv~NK~Dl~~~~--~~  148 (201)
T PRK04213         76 IKDEIVRYIEDNADRILAAVL----VVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE-LGIPPIVAVNKMDKIKNR--DE  148 (201)
T ss_pred             HHHHHHHHHHhhhhhheEEEE----EEeCccccccccccccCCCcHHHHHHHHHHHH-cCCCeEEEEECccccCcH--HH
Confidence            2222222322 1234567666    3333221100  000       0000010010 114589999999997643  11


Q ss_pred             hHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          177 SLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       177 ~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      ..+++.+.+....+.         .-....++++||++| |++++.+++...
T Consensus       149 ~~~~~~~~~~~~~~~---------~~~~~~~~~~SA~~g-gi~~l~~~l~~~  190 (201)
T PRK04213        149 VLDEIAERLGLYPPW---------RQWQDIIAPISAKKG-GIEELKEAIRKR  190 (201)
T ss_pred             HHHHHHHHhcCCccc---------cccCCcEEEEecccC-CHHHHHHHHHHh
Confidence            223333222100010         001124789999999 999999988754

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.21  E-value=2.6e-12  Score=107.10  Aligned_cols=188  Identities=15%  Similarity=0.186  Sum_probs=100.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccC--CCCeEEEEecCCCc-----ccccchhhhhcCCCCcceeeeeee-cCcceEeecc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGK--HGKRIAVILNEFGE-----EIGVERAMINEGEGGALVEEWVEL-ANGCICCTVK  104 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~--~~~~~~ii~~~~g~-----t~~~d~~~~~~~~~~~~~~~~~~l-~~g~~~~~~~  104 (263)
                      ++++++|+.|||||||+.+|....  .+...-+|.-||.-     ..++|.   ++..++.-+...+.+ +||++...+.
T Consensus        20 ~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDI---RDtVkYkEvMkqY~LGPNGgI~TsLN   96 (366)
T KOG1532|consen   20 VIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDI---RDTVKYKEVMKQYQLGPNGGIVTSLN   96 (366)
T ss_pred             cEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCch---hhhhhHHHHHHHhCCCCCcchhhhHH
Confidence            478899999999999999996541  12223444444321     012221   111111111233455 6776654332


Q ss_pred             ---hhHHHHHHHHHHhccCCcEEEEcccCCCCchhHH-------HHhh-cccc----------------------cccce
Q 024744          105 ---HSLVQALEQLVQRKERLDHILLETTGLANPAPLA-------SVLW-LDDQ----------------------LESAV  151 (263)
Q Consensus       105 ---~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~-------~~~~-~~~~----------------------l~~~~  151 (263)
                         ..+.+.+.-+-++...+++++|+|.|-.+...|.       +.+. ..+.                      .+..+
T Consensus        97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi  176 (366)
T KOG1532|consen   97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI  176 (366)
T ss_pred             HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence               2222223222223357899999999955433221       1100 0000                      01111


Q ss_pred             eeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC-CCeEE-----------EeecCCCChhhhhccccCCcchhh
Q 024744          152 RLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS-LAHVI-----------RSVRCQVDLSEVLNCRAYDATHVT  219 (263)
Q Consensus       152 ~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p-~~~i~-----------~~~~~~~~~~~ii~isa~~g~~~~  219 (263)
                      -+...+|.++++||+|+.+.+-...|+.++++....++. ....+           ..-+..   -..+.+|+.+|.|.+
T Consensus       177 lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~---lrtv~VSs~tG~G~d  253 (366)
T KOG1532|consen  177 LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRS---LRTVGVSSVTGEGFD  253 (366)
T ss_pred             HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhh---CceEEEecccCCcHH
Confidence            111123489999999999987666677777766666653 11111           011111   135678999999999


Q ss_pred             hhhhhhh
Q 024744          220 RLEGLLE  226 (263)
Q Consensus       220 ~l~~~l~  226 (263)
                      ++...+.
T Consensus       254 df~~av~  260 (366)
T KOG1532|consen  254 DFFTAVD  260 (366)
T ss_pred             HHHHHHH
Confidence            9887765

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.20  E-value=5.3e-11  Score=109.27  Aligned_cols=151  Identities=23%  Similarity=0.238  Sum_probs=88.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH--
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA--  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~--  110 (263)
                      ..++++|.+|||||||+|+|+    +.+.+++.+.+|+|++.....+...+  .. ..++|+ +|.-  . ..+..+.  
T Consensus       216 ~kV~ivG~~nvGKSSLln~L~----~~~~a~v~~~~gtT~d~~~~~i~~~g--~~-i~l~DT-~G~~--~-~~~~ie~~g  284 (449)
T PRK05291        216 LKVVIAGRPNVGKSSLLNALL----GEERAIVTDIAGTTRDVIEEHINLDG--IP-LRLIDT-AGIR--E-TDDEVEKIG  284 (449)
T ss_pred             CEEEEECCCCCCHHHHHHHHh----CCCCcccCCCCCcccccEEEEEEECC--eE-EEEEeC-CCCC--C-CccHHHHHH
Confidence            357899999999999999999    66667788888886654433333221  11 246777 4421  1 1122221  


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      +.+.......+|.+++-.+. .++....+......        ..-.+.++|+||+|+.+....    .       ..  
T Consensus       285 i~~~~~~~~~aD~il~VvD~-s~~~s~~~~~~l~~--------~~~~piiiV~NK~DL~~~~~~----~-------~~--  342 (449)
T PRK05291        285 IERSREAIEEADLVLLVLDA-SEPLTEEDDEILEE--------LKDKPVIVVLNKADLTGEIDL----E-------EE--  342 (449)
T ss_pred             HHHHHHHHHhCCEEEEEecC-CCCCChhHHHHHHh--------cCCCCcEEEEEhhhccccchh----h-------hc--
Confidence            22222223578888884433 22221111111111        111458999999999765310    1       00  


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                                  ....++.+||++|.|+++|.+++...
T Consensus       343 ------------~~~~~i~iSAktg~GI~~L~~~L~~~  368 (449)
T PRK05291        343 ------------NGKPVIRISAKTGEGIDELREAIKEL  368 (449)
T ss_pred             ------------cCCceEEEEeeCCCCHHHHHHHHHHH
Confidence                        11246889999999999999988754

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.20  E-value=1.4e-10  Score=90.59  Aligned_cols=151  Identities=21%  Similarity=0.247  Sum_probs=81.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHH-HHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV-QALE  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~-~~l~  112 (263)
                      .++++|++|||||||+|++.    +.+.+.+.+.++++...........  +.. ..++|+ +|..  ....... ..+.
T Consensus         3 ~i~l~G~~~~GKstli~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~i~Dt-pG~~--~~~~~~~~~~~~   72 (157)
T cd04164           3 KVVIVGKPNVGKSSLLNALA----GRDRAIVSDIAGTTRDVIEESIDIG--GIP-VRLIDT-AGIR--ETEDEIEKIGIE   72 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHH----CCceEeccCCCCCccceEEEEEEeC--CEE-EEEEEC-CCcC--CCcchHHHHHHH
Confidence            47899999999999999999    5555666666666443322112111  111 145676 4421  1111111 1111


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      .........|.+++-.+ ..++...........        ....+.++++||+|+.+...    .      .       
T Consensus        73 ~~~~~~~~~~~~v~v~d-~~~~~~~~~~~~~~~--------~~~~~vi~v~nK~D~~~~~~----~------~-------  126 (157)
T cd04164          73 RAREAIEEADLVLFVID-ASRGLDEEDLEILEL--------PADKPIIVVLNKSDLLPDSE----L------L-------  126 (157)
T ss_pred             HHHHHHhhCCEEEEEEE-CCCCCCHHHHHHHHh--------hcCCCEEEEEEchhcCCccc----c------c-------
Confidence            12122246777777222 222222211111110        11245899999999987641    0      0       


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                             ......+++.+||+++.|++++.+++..
T Consensus       127 -------~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  154 (157)
T cd04164         127 -------SLLAGKPIIAISAKTGEGLDELKEALLE  154 (157)
T ss_pred             -------cccCCCceEEEECCCCCCHHHHHHHHHH
Confidence                   0112346788999999999999988765

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.20  E-value=4.3e-11  Score=93.80  Aligned_cols=154  Identities=22%  Similarity=0.167  Sum_probs=79.8

Q ss_pred             EEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHHHH
Q 024744           37 ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQ  116 (263)
Q Consensus        37 i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~~~  116 (263)
                      |+|.+|+|||||+|++++    .+ ....+.+++|+......+...  +.. ..++|+ +|....... .....+.....
T Consensus         1 l~G~~~~GKssl~~~~~~----~~-~~~~~~~~~t~~~~~~~~~~~--~~~-~~liDt-pG~~~~~~~-~~~~~~~~~~~   70 (158)
T cd01879           1 LVGNPNVGKTTLFNALTG----AR-QKVGNWPGVTVEKKEGRFKLG--GKE-IEIVDL-PGTYSLSPY-SEDEKVARDFL   70 (158)
T ss_pred             CCCCCCCCHHHHHHHHhc----Cc-ccccCCCCcccccceEEEeeC--CeE-EEEEEC-CCccccCCC-ChhHHHHHHHh
Confidence            579999999999999984    32 233444555454433333322  111 257888 443211111 01112222211


Q ss_pred             hccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEE
Q 024744          117 RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR  196 (263)
Q Consensus       117 ~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~  196 (263)
                      ....+|.+++-.+ ..++.......   ..+..   .  -++.++++||+|+.+.....   .......+.++       
T Consensus        71 ~~~~~d~vi~v~d-~~~~~~~~~~~---~~~~~---~--~~~~iiv~NK~Dl~~~~~~~---~~~~~~~~~~~-------  131 (158)
T cd01879          71 LGEKPDLIVNVVD-ATNLERNLYLT---LQLLE---L--GLPVVVALNMIDEAEKRGIK---IDLDKLSELLG-------  131 (158)
T ss_pred             cCCCCcEEEEEee-CCcchhHHHHH---HHHHH---c--CCCEEEEEehhhhcccccch---hhHHHHHHhhC-------
Confidence            1147788777333 22332221111   11111   1  14589999999998764321   11221111111       


Q ss_pred             eecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          197 SVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       197 ~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                              .+++++||.+|.|++++..++..
T Consensus       132 --------~~~~~iSa~~~~~~~~l~~~l~~  154 (158)
T cd01879         132 --------VPVVPTSARKGEGIDELKDAIAE  154 (158)
T ss_pred             --------CCeEEEEccCCCCHHHHHHHHHH
Confidence                    14788999999999998887754

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.19  E-value=2.1e-10  Score=90.29  Aligned_cols=163  Identities=22%  Similarity=0.295  Sum_probs=79.7

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec----chhHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV----KHSLVQA  110 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~----~~~~~~~  110 (263)
                      |+++|.+|||||||+|.|++.   .......+..+.|.....  ....  .  -..++++ +|......    ...+...
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~---~~~~~~~~~~~~t~~~~~--~~~~--~--~~~~~D~-~g~~~~~~~~~~~~~~~~~   71 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNR---KKLARTSKTPGKTQLINF--FNVN--D--KFRLVDL-PGYGYAKVSKEVKEKWGKL   71 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcC---CceeeecCCCCcceeEEE--EEcc--C--eEEEecC-CCccccccCHHHHHHHHHH
Confidence            689999999999999999942   122223333333222111  1111  1  1235666 44322211    1223334


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      +..........+.+++-...-.........+  ...+.. ..    .+.++++||+|+.+.++.......+...++... 
T Consensus        72 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~--~~~l~~-~~----~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~-  143 (170)
T cd01876          72 IEEYLENRENLKGVVLLIDSRHGPTEIDLEM--LDWLEE-LG----IPFLVVLTKADKLKKSELAKALKEIKKELKLFE-  143 (170)
T ss_pred             HHHHHHhChhhhEEEEEEEcCcCCCHhHHHH--HHHHHH-cC----CCEEEEEEchhcCChHHHHHHHHHHHHHHHhcc-
Confidence            4444433345566655221111111111100  111111 12    347889999999765422111122222222111 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  ...+++++||+++.++.++.+++..
T Consensus       144 ------------~~~~~~~~Sa~~~~~~~~l~~~l~~  168 (170)
T cd01876         144 ------------IDPPIILFSSLKGQGIDELRALIEK  168 (170)
T ss_pred             ------------CCCceEEEecCCCCCHHHHHHHHHH
Confidence                        2235789999999999999988754

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.19  E-value=5.8e-11  Score=93.65  Aligned_cols=155  Identities=19%  Similarity=0.175  Sum_probs=78.1

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|++|||||||+++++...    .   ......+.+.+..  .+...+.... ..++++ +|.      ..+.....
T Consensus         3 v~v~G~~~~GKTtli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~D~-~G~------~~~~~~~~   67 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTDGK----F---SEQYKSTIGVDFKTKTIEVDGKRVK-LQIWDT-AGQ------ERFRSITS   67 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC----C---CCCCCCceeeEEEEEEEEECCEEEE-EEEEEC-CCh------HHHHHHHH
Confidence            6899999999999999998532    1   1111111111110  1111110011 235666 331      22222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..+   ...|.+++-. ++.++..+.........+.....  ..+|.++++||+|+.+..+.  ..+...+..+..+  .
T Consensus        68 ~~~---~~~d~~ilv~-d~~~~~s~~~~~~~l~~~~~~~~--~~~pivvv~nK~D~~~~~~~--~~~~~~~~~~~~~--~  137 (164)
T smart00175       68 SYY---RGAVGALLVY-DITNRESFENLKNWLKELREYAD--PNVVIMLVGNKSDLEDQRQV--SREEAEAFAEEHG--L  137 (164)
T ss_pred             HHh---CCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEEchhcccccCC--CHHHHHHHHHHcC--C
Confidence            222   3578777722 34444443222111111111110  13669999999998764321  2333444333221  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   +++.+||.+|.|++++..++..
T Consensus       138 -------------~~~e~Sa~~~~~i~~l~~~i~~  159 (164)
T smart00175      138 -------------PFFETSAKTNTNVEEAFEELAR  159 (164)
T ss_pred             -------------eEEEEeCCCCCCHHHHHHHHHH
Confidence                         3788999999999999887754

Rab GTPases are implicated in vesicle trafficking.

>cd04157 Arl6 Arl6 subfamily

Probab=99.18  E-value=8.3e-11  Score=92.64  Aligned_cols=158  Identities=14%  Similarity=0.138  Sum_probs=77.4

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      |+++|.+|||||||+++++....  ......+..|.    .......  .... ..++|+ +|.      ..+.......
T Consensus         2 i~~vG~~~~GKTsl~~~l~~~~~--~~~~~~~t~g~----~~~~~~~--~~~~-~~l~Dt-~G~------~~~~~~~~~~   65 (162)
T cd04157           2 ILVVGLDNSGKTTIINQLKPENA--QSQIIVPTVGF----NVESFEK--GNLS-FTAFDM-SGQ------GKYRGLWEHY   65 (162)
T ss_pred             EEEECCCCCCHHHHHHHHcccCC--CcceecCcccc----ceEEEEE--CCEE-EEEEEC-CCC------HhhHHHHHHH
Confidence            67999999999999999985311  11112222221    1111111  1111 246777 442      1222222222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          115 VQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      .   ...|.+++-.+ ..++..+... .++...+........-+|.++|+||+|+.+...    ..++...+....    
T Consensus        66 ~---~~~d~ii~v~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~----~~~~~~~l~~~~----  133 (162)
T cd04157          66 Y---KNIQGIIFVID-SSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT----AVKITQLLGLEN----  133 (162)
T ss_pred             H---ccCCEEEEEEe-CCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC----HHHHHHHhCCcc----
Confidence            2   46788877333 2333322111 011111111000011256999999999976431    233333332100    


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +     ...+ -.++.+||++|.|++++.++|.
T Consensus       134 ~-----~~~~-~~~~~~Sa~~g~gv~~~~~~l~  160 (162)
T cd04157         134 I-----KDKP-WHIFASNALTGEGLDEGVQWLQ  160 (162)
T ss_pred             c-----cCce-EEEEEeeCCCCCchHHHHHHHh
Confidence            0     0001 1467899999999999998874

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.17  E-value=8.2e-11  Score=93.32  Aligned_cols=158  Identities=13%  Similarity=0.092  Sum_probs=77.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++++|.+|+|||||+++++...    ... ...+..+.......+...+.... .+++|+ +|.      ..+......
T Consensus         4 ki~i~G~~~vGKSsli~~~~~~~----~~~-~~~~t~~~~~~~~~~~~~~~~~~-~~i~D~-~G~------~~~~~~~~~   70 (166)
T cd01869           4 KLLLIGDSGVGKSCLLLRFADDT----YTE-SYISTIGVDFKIRTIELDGKTIK-LQIWDT-AGQ------ERFRTITSS   70 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC----CCC-CCCCccceeEEEEEEEECCEEEE-EEEEEC-CCc------HhHHHHHHH
Confidence            36799999999999999998531    110 11111101111111111111111 245666 331      222222222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ..   ...|.+++-. ++.++..+.........+....  ....+.++|.||+|+......  ..++.....+..  .. 
T Consensus        71 ~~---~~~~~ii~v~-d~~~~~s~~~l~~~~~~~~~~~--~~~~~~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~--~~-  139 (166)
T cd01869          71 YY---RGAHGIIIVY-DVTDQESFNNVKQWLQEIDRYA--SENVNKLLVGNKCDLTDKRVV--DYSEAQEFADEL--GI-  139 (166)
T ss_pred             Hh---CcCCEEEEEE-ECcCHHHHHhHHHHHHHHHHhC--CCCCcEEEEEEChhcccccCC--CHHHHHHHHHHc--CC-
Confidence            22   3577777722 2344443322211111111111  012458899999998765422  123333322221  11 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  +++.+||++|.|++++...+..
T Consensus       140 ------------~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869         140 ------------PFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             ------------eEEEEECCCCcCHHHHHHHHHH
Confidence                        4688999999999999877654

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04112 Rab26 Rab26 subfamily

Probab=99.17  E-value=1.8e-10  Score=93.87  Aligned_cols=157  Identities=12%  Similarity=0.098  Sum_probs=76.6

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|.+|||||||++++.....    ..-...+ + ...+.  ..+...+... -..++|+ +|.      ..+.....
T Consensus         3 i~vvG~~~vGKTSli~~~~~~~~----~~~~~~~-t-~~~~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~~   68 (191)
T cd04112           3 VMLLGDSGVGKTCLLVRFKDGAF----LNGNFIA-T-VGIDFRNKVVTVDGVKV-KLQIWDT-AGQ------ERFRSVTH   68 (191)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC----CccCcCC-c-ccceeEEEEEEECCEEE-EEEEEeC-CCc------HHHHHhhH
Confidence            67999999999999999985321    0000111 1 21111  1111111111 1245676 331      12222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...   ..+|.+++-. .+.++..+.+.......+.....  ..+|.++|.||+|+......  ..++.....+..+   
T Consensus        69 ~~~---~~ad~~i~v~-D~~~~~s~~~~~~~~~~i~~~~~--~~~piiiv~NK~Dl~~~~~~--~~~~~~~l~~~~~---  137 (191)
T cd04112          69 AYY---RDAHALLLLY-DITNKASFDNIRAWLTEIKEYAQ--EDVVIMLLGNKADMSGERVV--KREDGERLAKEYG---  137 (191)
T ss_pred             HHc---cCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccchhcccc--CHHHHHHHHHHcC---
Confidence            222   3567776622 23444333221111111221111  12568899999999754321  1222333222211   


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                                  .+++.+||++|.|++++..++...
T Consensus       138 ------------~~~~e~Sa~~~~~v~~l~~~l~~~  161 (191)
T cd04112         138 ------------VPFMETSAKTGLNVELAFTAVAKE  161 (191)
T ss_pred             ------------CeEEEEeCCCCCCHHHHHHHHHHH
Confidence                        146789999999999999888643

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01864 Rab19 Rab19 subfamily

Probab=99.17  E-value=1.8e-10  Score=91.38  Aligned_cols=157  Identities=16%  Similarity=0.169  Sum_probs=77.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      -++++|.+|||||||++++....    .   ......+.+.+..  .+...+... -..++|+ +|.      ..+....
T Consensus         5 kv~vvG~~~~GKTsli~~l~~~~----~---~~~~~~t~~~~~~~~~~~~~~~~~-~l~i~D~-~G~------~~~~~~~   69 (165)
T cd01864           5 KIILIGDSNVGKTCVVQRFKSGT----F---SERQGNTIGVDFTMKTLEIEGKRV-KLQIWDT-AGQ------ERFRTIT   69 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC----C---cccCCCccceEEEEEEEEECCEEE-EEEEEEC-CCh------HHHHHHH
Confidence            46789999999999999998431    1   1111111221111  111111001 1245666 331      2222222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ....   ...|.+++-. .+.++..+.........+... . ..-+|.++|.||+|+.+....  ..+...+..+..   
T Consensus        70 ~~~~---~~~d~~llv~-d~~~~~s~~~~~~~~~~i~~~-~-~~~~p~ivv~nK~Dl~~~~~~--~~~~~~~~~~~~---  138 (165)
T cd01864          70 QSYY---RSANGAIIAY-DITRRSSFESVPHWIEEVEKY-G-ASNVVLLLIGNKCDLEEQREV--LFEEACTLAEKN---  138 (165)
T ss_pred             HHHh---ccCCEEEEEE-ECcCHHHHHhHHHHHHHHHHh-C-CCCCcEEEEEECccccccccc--CHHHHHHHHHHc---
Confidence            2222   3567777732 234443332211001111111 0 112458899999999765321  223333333322   


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                 ....++++||++|.|++++..++..
T Consensus       139 -----------~~~~~~e~Sa~~~~~v~~~~~~l~~  163 (165)
T cd01864         139 -----------GMLAVLETSAKESQNVEEAFLLMAT  163 (165)
T ss_pred             -----------CCcEEEEEECCCCCCHHHHHHHHHH
Confidence                       1224688999999999999887653

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01868 Rab11_like Rab11-like

Probab=99.17  E-value=1.5e-10  Score=91.62  Aligned_cols=158  Identities=16%  Similarity=0.088  Sum_probs=76.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++++|.+|||||||+++++..    +... ...+..+.......+...+... -..++|+ +|.      ..+......
T Consensus         5 ki~vvG~~~~GKSsli~~l~~~----~~~~-~~~~t~~~~~~~~~~~~~~~~~-~~~l~D~-~g~------~~~~~~~~~   71 (165)
T cd01868           5 KIVLIGDSGVGKSNLLSRFTRN----EFNL-DSKSTIGVEFATRSIQIDGKTI-KAQIWDT-AGQ------ERYRAITSA   71 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC----CCCC-CCCCccceEEEEEEEEECCEEE-EEEEEeC-CCh------HHHHHHHHH
Confidence            4789999999999999999843    2110 0111110111111111111111 1246676 332      112222222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ..   ...+.+++- .++.++..+.........+....  ..-+|.++|.||+|+.+....  ..++..+..+..  .. 
T Consensus        72 ~~---~~~~~~i~v-~d~~~~~s~~~~~~~~~~~~~~~--~~~~pi~vv~nK~Dl~~~~~~--~~~~~~~~~~~~--~~-  140 (165)
T cd01868          72 YY---RGAVGALLV-YDITKKQTFENVERWLKELRDHA--DSNIVIMLVGNKSDLRHLRAV--PTEEAKAFAEKN--GL-  140 (165)
T ss_pred             HH---CCCCEEEEE-EECcCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccccccC--CHHHHHHHHHHc--CC-
Confidence            22   345655552 23445544332211111111111  112568899999999764321  223333333221  11 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  .++.+||++|.|++++.+++..
T Consensus       141 ------------~~~~~Sa~~~~~v~~l~~~l~~  162 (165)
T cd01868         141 ------------SFIETSALDGTNVEEAFKQLLT  162 (165)
T ss_pred             ------------EEEEEECCCCCCHHHHHHHHHH
Confidence                        3678999999999999887654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.16  E-value=1.3e-10  Score=90.51  Aligned_cols=156  Identities=21%  Similarity=0.236  Sum_probs=75.4

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|++|||||||+|+|.+.    +.. ....+  |.+.+...+..+  .. ...++++ +|.      ..+.......
T Consensus         2 i~i~G~~~~GKssl~~~l~~~----~~~-~~~~~--t~~~~~~~~~~~--~~-~~~~~D~-~g~------~~~~~~~~~~   64 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG----QFS-EDTIP--TVGFNMRKVTKG--NV-TLKVWDL-GGQ------PRFRSMWERY   64 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC----CCC-cCccC--CCCcceEEEEEC--CE-EEEEEEC-CCC------HhHHHHHHHH
Confidence            689999999999999999853    110 00011  122221112111  11 1245666 332      2233333333


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      +   ..+|.+++-.+ +.++..+.... .+...+... . ..-++.++|+||+|+.+...    .+.+...+.. .. . 
T Consensus        65 ~---~~~d~ii~v~d-~~~~~~~~~~~~~~~~~~~~~-~-~~~~p~iiv~nK~D~~~~~~----~~~~~~~~~~-~~-~-  131 (159)
T cd04159          65 C---RGVNAIVYVVD-AADRTALEAAKNELHDLLEKP-S-LEGIPLLVLGNKNDLPGALS----VDELIEQMNL-KS-I-  131 (159)
T ss_pred             H---hcCCEEEEEEE-CCCHHHHHHHHHHHHHHHcCh-h-hcCCCEEEEEeCccccCCcC----HHHHHHHhCc-cc-c-
Confidence            3   35677776222 22332221110 111111110 0 01145889999999876532    2222222210 00 0 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                            .. .....+.+|+++|.|++++..++.+
T Consensus       132 ------~~-~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         132 ------TD-REVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             ------cC-CceEEEEEEeccCCChHHHHHHHhh
Confidence                  00 1124678999999999999888743

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.16  E-value=2.5e-10  Score=89.67  Aligned_cols=53  Identities=17%  Similarity=0.052  Sum_probs=34.9

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +|.++|.||+|+.+...   ..+...+..+..+               .+++.+||++|.|++++..++.+
T Consensus       107 ~piivv~nK~Dl~~~~~---~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138         107 VPMVLVGNKCDLAARTV---SSRQGQDLAKSYG---------------IPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             CCEEEEEECccccccee---cHHHHHHHHHHhC---------------CeEEEecCCCCCCHHHHHHHHHH
Confidence            45899999999976431   1233333322221               13678999999999999887653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04151 Arl1 Arl1 subfamily

Probab=99.15  E-value=8.8e-11  Score=92.48  Aligned_cols=154  Identities=18%  Similarity=0.131  Sum_probs=76.4

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|+|||||++++...    +..  ...+  |.+.+...+..  .... ..++|+ +|.      ..+.. +...
T Consensus         2 v~lvG~~~~GKTsl~~~l~~~----~~~--~~~~--t~~~~~~~~~~--~~~~-~~i~Dt-~G~------~~~~~-~~~~   62 (158)
T cd04151           2 ILILGLDNAGKTTILYRLQLG----EVV--TTIP--TIGFNVETVTY--KNLK-FQVWDL-GGQ------TSIRP-YWRC   62 (158)
T ss_pred             EEEECCCCCCHHHHHHHHccC----CCc--CcCC--ccCcCeEEEEE--CCEE-EEEEEC-CCC------HHHHH-HHHH
Confidence            579999999999999999742    111  1111  12222111211  1111 256777 442      12222 2222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          115 VQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      .  ...+|.+++-.+ ..++..+... ..+...+... ... -+|.++|+||+|+.+..    ...++.+.+......  
T Consensus        63 ~--~~~~~~ii~v~d-~~~~~~~~~~~~~~~~~~~~~-~~~-~~piiiv~nK~Dl~~~~----~~~~i~~~~~~~~~~--  131 (158)
T cd04151          63 Y--YSNTDAIIYVVD-STDRDRLGTAKEELHAMLEEE-ELK-GAVLLVFANKQDMPGAL----SEAEISEKLGLSELK--  131 (158)
T ss_pred             H--hcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHhch-hhc-CCcEEEEEeCCCCCCCC----CHHHHHHHhCccccC--
Confidence            1  246788777333 3333222110 0011111111 111 15699999999997543    123333333211000  


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                             ... .+++++||++|.|++++.+++.
T Consensus       132 -------~~~-~~~~~~Sa~~~~gi~~l~~~l~  156 (158)
T cd04151         132 -------DRT-WSIFKTSAIKGEGLDEGMDWLV  156 (158)
T ss_pred             -------CCc-EEEEEeeccCCCCHHHHHHHHh
Confidence                   001 2578999999999999998874

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.15  E-value=1.6e-10  Score=89.65  Aligned_cols=52  Identities=13%  Similarity=0.173  Sum_probs=36.1

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      .+.++++||+|+....    ........+...+              ..+++++||.+|.|+.++.++|.
T Consensus       109 ~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~--------------~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       109 VPIILVGNKIDLRDAK----LKTHVAFLFAKLN--------------GEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             CcEEEEEEcccCCcch----hhHHHHHHHhhcc--------------CCceEEeecCCCCCHHHHHHHhh
Confidence            4589999999998653    1233344443332              23478999999999999988764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.15  E-value=2.4e-10  Score=92.17  Aligned_cols=69  Identities=20%  Similarity=0.205  Sum_probs=40.1

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEE-eecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR-SVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~-~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ++.++++||+|+.++++.....+.+++.++......  .. .........+++++||++|.|++++..++..
T Consensus       115 ~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~  184 (189)
T cd00881         115 LPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS--TKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVE  184 (189)
T ss_pred             CCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc--hhhhhcccCCcceEEEEecccCcCHHHHHHHHHh
Confidence            458999999999875432122333333333221100  00 0001113456889999999999999888754

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.15  E-value=2.4e-10  Score=93.83  Aligned_cols=158  Identities=17%  Similarity=0.257  Sum_probs=80.3

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcC-CCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEG-EGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~-~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ++++|.+|||||||+++++...-       ......|.+.+..  .+... +.. ....+.|+ +|.      ..+. .+
T Consensus         3 ivivG~~~vGKTsli~~l~~~~~-------~~~~~~t~~~d~~~~~v~~~~~~~-~~l~l~Dt-~G~------~~~~-~~   66 (201)
T cd04107           3 VLVIGDLGVGKTSIIKRYVHGIF-------SQHYKATIGVDFALKVIEWDPNTV-VRLQLWDI-AGQ------ERFG-GM   66 (201)
T ss_pred             EEEECCCCCCHHHHHHHHHcCCC-------CCCCCCceeEEEEEEEEEECCCCE-EEEEEEEC-CCc------hhhh-hh
Confidence            67999999999999999985310       0111111222211  11111 111 11246677 332      1222 22


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceee--CeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRL--DSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~--~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      ....  ...++.+++-. ++.++..+.........+......  ..-+|.++|.||+|+.+....  ..+++.+..+..+
T Consensus        67 ~~~~--~~~a~~~ilv~-D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~~~~~~~~~  141 (201)
T cd04107          67 TRVY--YRGAVGAIIVF-DVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK--DGEQMDQFCKENG  141 (201)
T ss_pred             HHHH--hCCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc--CHHHHHHHHHHcC
Confidence            2221  14677777733 345555443321111111111111  122568999999999743211  2344444444321


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                    ...++.+||++|.|++++..++..
T Consensus       142 --------------~~~~~e~Sak~~~~v~e~f~~l~~  165 (201)
T cd04107         142 --------------FIGWFETSAKEGINIEEAMRFLVK  165 (201)
T ss_pred             --------------CceEEEEeCCCCCCHHHHHHHHHH
Confidence                          124678999999999999888764

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04154 Arl2 Arl2 subfamily

Probab=99.15  E-value=1e-10  Score=93.67  Aligned_cols=156  Identities=19%  Similarity=0.203  Sum_probs=78.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-++++|++|||||||+++++..    .+....+.    .+.....+...  ... ..++|+ +|.      ..+.....
T Consensus        15 ~kv~ivG~~~~GKTsL~~~l~~~----~~~~~~~t----~g~~~~~~~~~--~~~-l~l~D~-~G~------~~~~~~~~   76 (173)
T cd04154          15 MRILILGLDNAGKTTILKKLLGE----DIDTISPT----LGFQIKTLEYE--GYK-LNIWDV-GGQ------KTLRPYWR   76 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHccC----CCCCcCCc----cccceEEEEEC--CEE-EEEEEC-CCC------HHHHHHHH
Confidence            35789999999999999999843    22111111    22111111111  111 246777 332      12222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ...   ...|.+++-.+ ..++..+.+. .++...+... .. ...+.++|+||+|+.+..    ..+++.+.++.....
T Consensus        77 ~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~p~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~  146 (173)
T cd04154          77 NYF---ESTDALIWVVD-SSDRLRLDDCKRELKELLQEE-RL-AGATLLILANKQDLPGAL----SEEEIREALELDKIS  146 (173)
T ss_pred             HHh---CCCCEEEEEEE-CCCHHHHHHHHHHHHHHHhCh-hh-cCCCEEEEEECcccccCC----CHHHHHHHhCccccC
Confidence            222   36677766333 3334332221 1111111111 11 125689999999997643    234444444321100


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      .          ..-+++.+||++|.|++++.+++.
T Consensus       147 ~----------~~~~~~~~Sa~~g~gi~~l~~~l~  171 (173)
T cd04154         147 S----------HHWRIQPCSAVTGEGLLQGIDWLV  171 (173)
T ss_pred             C----------CceEEEeccCCCCcCHHHHHHHHh
Confidence            0          112578999999999999988864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.15  E-value=1.2e-10  Score=91.71  Aligned_cols=156  Identities=17%  Similarity=0.190  Sum_probs=75.6

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|+|||||++++...    +..  ...+  |.+.+...+.... . ....+.|+ +|.      ..+.......
T Consensus         2 i~i~G~~~~GKTsl~~~~~~~----~~~--~~~~--t~~~~~~~~~~~~-~-~~l~i~D~-~G~------~~~~~~~~~~   64 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLKHA----ELV--TTIP--TVGFNVEMLQLEK-H-LSLTVWDV-GGQ------EKMRTVWKCY   64 (160)
T ss_pred             EEEEcCCCCCHHHHHHHHhcC----Ccc--cccC--ccCcceEEEEeCC-c-eEEEEEEC-CCC------HhHHHHHHHH
Confidence            679999999999999999843    221  1111  1222221222111 1 11245666 332      1222222222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      .   ...|.+++-.+ ..++..+.... ++...+... .. .-.|.++|+||+|+.+..    ..+.+...++. .... 
T Consensus        65 ~---~~~~~iv~v~D-~~~~~~~~~~~~~~~~~~~~~-~~-~~~piilv~nK~Dl~~~~----~~~~i~~~~~~-~~~~-  132 (160)
T cd04156          65 L---ENTDGLVYVVD-SSDEARLDESQKELKHILKNE-HI-KGVPVVLLANKQDLPGAL----TAEEITRRFKL-KKYC-  132 (160)
T ss_pred             h---ccCCEEEEEEE-CCcHHHHHHHHHHHHHHHhch-hh-cCCCEEEEEECcccccCc----CHHHHHHHcCC-cccC-
Confidence            2   35677777333 23333222111 111111111 00 125599999999986542    12333333211 0000 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                             .-..-+++++||++|+|++++..+|.
T Consensus       133 -------~~~~~~~~~~Sa~~~~gv~~~~~~i~  158 (160)
T cd04156         133 -------SDRDWYVQPCSAVTGEGLAEAFRKLA  158 (160)
T ss_pred             -------CCCcEEEEecccccCCChHHHHHHHh
Confidence                   00011477899999999999988763

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01862 Rab7 Rab7 subfamily

Probab=99.15  E-value=1.2e-10  Score=92.60  Aligned_cols=55  Identities=18%  Similarity=0.123  Sum_probs=37.2

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +|.++|+||+|+.++...  ..+.++...+...              ..+++.+||.+|.|++++.+++..
T Consensus       110 ~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~Sa~~~~gv~~l~~~i~~  164 (172)
T cd01862         110 FPFVVLGNKIDLEEKRQV--STKKAQQWCQSNG--------------NIPYFETSAKEAINVEQAFETIAR  164 (172)
T ss_pred             ceEEEEEECccccccccc--CHHHHHHHHHHcC--------------CceEEEEECCCCCCHHHHHHHHHH
Confidence            568899999999853211  2344444443321              235788999999999999888764

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04123 Rab21 Rab21 subfamily

Probab=99.15  E-value=3.4e-10  Score=88.86  Aligned_cols=157  Identities=19%  Similarity=0.151  Sum_probs=76.6

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|++|+|||||+++++...    ... .+.+..+.......+....... ...++|+ +|      ...+ ..+...
T Consensus         3 i~i~G~~~~GKStli~~l~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~-~g------~~~~-~~~~~~   68 (162)
T cd04123           3 VVLLGEGRVGKTSLVLRYVENK----FNE-KHESTTQASFFQKTVNIGGKRI-DLAIWDT-AG------QERY-HALGPI   68 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC----CCC-CcCCccceeEEEEEEEECCEEE-EEEEEEC-Cc------hHHH-HHhhHH
Confidence            6899999999999999998531    110 0111100111111111111111 1235565 32      1112 122222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  194 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i  194 (263)
                      ..  ...|.+++-.+ +.++..+.........+......  -++.++++||+|+......  ..+.+.+..+..+  .  
T Consensus        69 ~~--~~~~~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~--~--  137 (162)
T cd04123          69 YY--RDADGAILVYD-ITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQRVV--SKSEAEEYAKSVG--A--  137 (162)
T ss_pred             Hh--ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccccCC--CHHHHHHHHHHcC--C--
Confidence            21  35677766222 34444332221111122221111  2568999999999854322  1233344333321  1  


Q ss_pred             EEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                 .++.+|+++|.|++++.+++..
T Consensus       138 -----------~~~~~s~~~~~gi~~~~~~l~~  159 (162)
T cd04123         138 -----------KHFETSAKTGKGIEELFLSLAK  159 (162)
T ss_pred             -----------EEEEEeCCCCCCHHHHHHHHHH
Confidence                       3578999999999999988754

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04136 Rap_like Rap-like subfamily

Probab=99.15  E-value=1.8e-10  Score=90.72  Aligned_cols=158  Identities=17%  Similarity=0.130  Sum_probs=74.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++++|.+|||||||+++++...    .  ......++.......+...+.. ....+.|+ +|.      +.+. .+..
T Consensus         3 ki~i~G~~~vGKTsl~~~~~~~~----~--~~~~~~t~~~~~~~~~~~~~~~-~~l~i~Dt-~G~------~~~~-~~~~   67 (163)
T cd04136           3 KVVVLGSGGVGKSALTVQFVQGI----F--VEKYDPTIEDSYRKQIEVDGQQ-CMLEILDT-AGT------EQFT-AMRD   67 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC----C--CcccCCchhhhEEEEEEECCEE-EEEEEEEC-CCc------cccc-hHHH
Confidence            36799999999999999998531    1  0111111010000011111111 11245677 332      1121 2222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ..-  ...|.+++-.+ +.++..+.........+...... .-+|.++|.||+|+.+....  ..+...+..+..+    
T Consensus        68 ~~~--~~~~~~ilv~d-~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~----  137 (163)
T cd04136          68 LYI--KNGQGFVLVYS-ITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDERVV--SREEGQALARQWG----  137 (163)
T ss_pred             HHh--hcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccee--cHHHHHHHHHHcC----
Confidence            221  24566555222 34444332221111112111111 12458899999998764321  1122222212111    


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                 .+++.+||++|.|+.++..++..
T Consensus       138 -----------~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136         138 -----------CPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             -----------CeEEEecCCCCCCHHHHHHHHHH
Confidence                       24688999999999999887643

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd00154 Rab Rab family

Probab=99.14  E-value=1.3e-10  Score=90.45  Aligned_cols=154  Identities=18%  Similarity=0.156  Sum_probs=75.7

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc--hhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE--RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d--~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|++|||||||+|++......    .. .  ..|.+.+  ...+....... -..++++ +|.      ..+.....
T Consensus         3 i~~~G~~~~GKStl~~~l~~~~~~----~~-~--~~t~~~~~~~~~~~~~~~~~-~~~l~D~-~g~------~~~~~~~~   67 (159)
T cd00154           3 IVLIGDSGVGKTSLLLRFVDGKFD----EN-Y--KSTIGVDFKSKTIEIDGKTV-KLQIWDT-AGQ------ERFRSITP   67 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHhCcCC----Cc-c--CCceeeeeEEEEEEECCEEE-EEEEEec-CCh------HHHHHHHH
Confidence            689999999999999999854211    10 0  0011111  11111111011 1135566 332      22222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..+   ...|.+++-.+ +.++..+.........+.....  ...+.++++||+|+..+...  ..+.+++..+..    
T Consensus        68 ~~~---~~~d~ii~v~d-~~~~~~~~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----  135 (159)
T cd00154          68 SYY---RGAHGAILVYD-ITNRESFENLDKWLKELKEYAP--ENIPIILVGNKIDLEDQRQV--STEEAQQFAKEN----  135 (159)
T ss_pred             HHh---cCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEEcccccccccc--cHHHHHHHHHHc----
Confidence            222   35788777222 3333332221111111111110  12458999999999733321  234444433321    


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                 ..+++.+||.+|.|++++..++.
T Consensus       136 -----------~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         136 -----------GLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             -----------CCeEEEEecCCCCCHHHHHHHHh
Confidence                       12478899999999999988763

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01866 Rab2 Rab2 subfamily

Probab=99.14  E-value=3e-10  Score=90.44  Aligned_cols=157  Identities=19%  Similarity=0.116  Sum_probs=77.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEec-CCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILN-EFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~-~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      -++++|.+|+|||||+++++..    +...... ..|  .......+...+.... ..+.|+ +|.      +.+.....
T Consensus         6 ki~vvG~~~vGKSsLl~~l~~~----~~~~~~~~t~~--~~~~~~~~~~~~~~~~-~~i~Dt-~G~------~~~~~~~~   71 (168)
T cd01866           6 KYIIIGDTGVGKSCLLLQFTDK----RFQPVHDLTIG--VEFGARMITIDGKQIK-LQIWDT-AGQ------ESFRSITR   71 (168)
T ss_pred             EEEEECCCCCCHHHHHHHHHcC----CCCCCCCCccc--eeEEEEEEEECCEEEE-EEEEEC-CCc------HHHHHHHH
Confidence            4789999999999999999853    1111100 011  1111111111111111 245666 331      22222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...   ...|.+++-.+ +.++..+.........+....  ..-++.++|.||+|+.+....  ..++.+...+..  .+
T Consensus        72 ~~~---~~~d~il~v~d-~~~~~s~~~~~~~~~~~~~~~--~~~~pvivv~nK~Dl~~~~~~--~~~~~~~~~~~~--~~  141 (168)
T cd01866          72 SYY---RGAAGALLVYD-ITRRETFNHLTSWLEDARQHS--NSNMTIMLIGNKCDLESRREV--SYEEGEAFAKEH--GL  141 (168)
T ss_pred             HHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECcccccccCC--CHHHHHHHHHHc--CC
Confidence            222   46788777332 344444332211111111110  012558999999999854321  223333333322  11


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   .++++||.+|+|++++..++..
T Consensus       142 -------------~~~e~Sa~~~~~i~~~~~~~~~  163 (168)
T cd01866         142 -------------IFMETSAKTASNVEEAFINTAK  163 (168)
T ss_pred             -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence                         3688999999999998877654

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd00876 Ras Ras family

Probab=99.13  E-value=2e-10  Score=90.02  Aligned_cols=157  Identities=17%  Similarity=0.165  Sum_probs=77.0

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|++|||||||+++++...      .......++...........+ ......++++ +|.      ..........
T Consensus         2 i~i~G~~~~GKTsli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~D~-~g~------~~~~~~~~~~   67 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKGT------FVEEYDPTIEDSYRKTIVVDG-ETYTLDILDT-AGQ------EEFSAMRDLY   67 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC------CCcCcCCChhHeEEEEEEECC-EEEEEEEEEC-CCh------HHHHHHHHHH
Confidence            6899999999999999998531      111111111110000011110 0011234555 321      1222222222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  194 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i  194 (263)
                      .   ...|.+++-. .+.++..+.+.......+..... ....+.++++||+|+.+....  ..+......+..+     
T Consensus        68 ~---~~~~~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~-----  135 (160)
T cd00876          68 I---RQGDGFILVY-SITDRESFEEIKGYREQILRVKD-DEDIPIVLVGNKCDLENERQV--SKEEGKALAKEWG-----  135 (160)
T ss_pred             H---hcCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCccccccee--cHHHHHHHHHHcC-----
Confidence            2   3567777622 23444433222111111111111 012558999999999874321  2334444444332     


Q ss_pred             EEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                .+++.+|+.+|.|++++..++..
T Consensus       136 ----------~~~~~~S~~~~~~i~~l~~~l~~  158 (160)
T cd00876         136 ----------CPFIETSAKDNINIDEVFKLLVR  158 (160)
T ss_pred             ----------CcEEEeccCCCCCHHHHHHHHHh
Confidence                      24678999999999999887643

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04113 Rab4 Rab4 subfamily

Probab=99.13  E-value=1.3e-10  Score=91.60  Aligned_cols=155  Identities=16%  Similarity=0.146  Sum_probs=75.8

Q ss_pred             EEEEccCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~-~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      ++++|.+|+|||||+++++.... ...    ....+  .......+...+... -..++|+ +|.      ..+......
T Consensus         3 i~v~G~~~vGKTsli~~l~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~-~l~l~D~-~G~------~~~~~~~~~   68 (161)
T cd04113           3 FIIIGSSGTGKSCLLHRFVENKFKEDS----QHTIG--VEFGSKIIRVGGKRV-KLQIWDT-AGQ------ERFRSVTRS   68 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCCC----CCcee--eeEEEEEEEECCEEE-EEEEEEC-cch------HHHHHhHHH
Confidence            67999999999999999985321 000    00001  001111111111111 1246666 432      222222222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ..   ...|.+++-. .+.++..+.........+....  ..-++.++|.||+|+......  ..+......+..+    
T Consensus        69 ~~---~~~~~~i~v~-d~~~~~s~~~~~~~~~~~~~~~--~~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~----  136 (161)
T cd04113          69 YY---RGAAGALLVY-DITNRTSFEALPTWLSDARALA--SPNIVVILVGNKSDLADQREV--TFLEASRFAQENG----  136 (161)
T ss_pred             Hh---cCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEEchhcchhccC--CHHHHHHHHHHcC----
Confidence            22   3567777722 2333333222111001111111  112568999999999764321  2233444443322    


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                 -+++.+||++|.|++++..++.
T Consensus       137 -----------~~~~~~Sa~~~~~i~~~~~~~~  158 (161)
T cd04113         137 -----------LLFLETSALTGENVEEAFLKCA  158 (161)
T ss_pred             -----------CEEEEEECCCCCCHHHHHHHHH
Confidence                       1478899999999999988764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.13  E-value=1.9e-10  Score=90.45  Aligned_cols=154  Identities=17%  Similarity=0.192  Sum_probs=78.1

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|+|||||+++++...    ..-...    |.+.....+...  . ....++|+ +|.      ..+.......
T Consensus         2 i~iiG~~~~GKssli~~~~~~~----~~~~~~----t~~~~~~~~~~~--~-~~~~i~D~-~G~------~~~~~~~~~~   63 (158)
T cd00878           2 ILILGLDGAGKTTILYKLKLGE----VVTTIP----TIGFNVETVEYK--N-VSFTVWDV-GGQ------DKIRPLWKHY   63 (158)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCC----CCCCCC----CcCcceEEEEEC--C-EEEEEEEC-CCC------hhhHHHHHHH
Confidence            6899999999999999999532    110011    122111111111  1 11256777 442      1222222222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      +   ...|.+++- ....++..+.... ++...+... . ..-.+.++++||+|+....    ..+++.+.++...... 
T Consensus        64 ~---~~~~~~i~v-~D~~~~~~~~~~~~~~~~~~~~~-~-~~~~piiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~-  132 (158)
T cd00878          64 Y---ENTNGIIFV-VDSSDRERIEEAKEELHKLLNEE-E-LKGVPLLIFANKQDLPGAL----SVSELIEKLGLEKILG-  132 (158)
T ss_pred             h---ccCCEEEEE-EECCCHHHHHHHHHHHHHHHhCc-c-cCCCcEEEEeeccCCcccc----CHHHHHHhhChhhccC-
Confidence            2   356777772 2233332222111 001111111 1 1124589999999998654    2345555544321110 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                               ...+++.+||++|.|++++..+|.
T Consensus       133 ---------~~~~~~~~Sa~~~~gv~~~~~~l~  156 (158)
T cd00878         133 ---------RRWHIQPCSAVTGDGLDEGLDWLL  156 (158)
T ss_pred             ---------CcEEEEEeeCCCCCCHHHHHHHHh
Confidence                     122578899999999999988764

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.13  E-value=2e-10  Score=90.70  Aligned_cols=157  Identities=16%  Similarity=0.165  Sum_probs=76.7

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|.+|+|||||+++++.....      . ....|.+.+..  .+...+... ...++++ +|-      +.+.....
T Consensus         3 i~~vG~~~vGKTsli~~l~~~~~~------~-~~~~t~~~~~~~~~~~~~~~~~-~l~i~Dt-~G~------~~~~~~~~   67 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEGRFV------S-KYLPTIGIDYGVKKVSVRNKEV-RVNFFDL-SGH------PEYLEVRN   67 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCC------C-CCCCccceeEEEEEEEECCeEE-EEEEEEC-Ccc------HHHHHHHH
Confidence            689999999999999999954210      0 11111222211  111111111 1245666 321      22222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee---eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR---LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~---~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      ...   ..+|.+++-. ++.++..+.........+.....   .....+.++|.||+|+.+....  ..+..+...+..+
T Consensus        68 ~~~---~~~d~~ilv~-D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~  141 (168)
T cd04119          68 EFY---KDTQGVLLVY-DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAV--SEDEGRLWAESKG  141 (168)
T ss_pred             HHh---ccCCEEEEEE-ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccccccc--CHHHHHHHHHHcC
Confidence            222   3567777732 23444333221111111111111   0112568999999999743211  1233333333221


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                        .             +++.+||++|.|++++..++..
T Consensus       142 --~-------------~~~~~Sa~~~~gi~~l~~~l~~  164 (168)
T cd04119         142 --F-------------KYFETSACTGEGVNEMFQTLFS  164 (168)
T ss_pred             --C-------------eEEEEECCCCCCHHHHHHHHHH
Confidence              1             3678999999999999887643

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.13  E-value=1.6e-10  Score=93.71  Aligned_cols=164  Identities=19%  Similarity=0.156  Sum_probs=82.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-++++|.+|||||||++++..    .++....+.    .+.....+...  ... ..++|+ +|.      ........
T Consensus        18 ~~i~ivG~~~~GKTsli~~l~~----~~~~~~~~t----~~~~~~~~~~~--~~~-~~~~D~-~G~------~~~~~~~~   79 (184)
T smart00178       18 AKILFLGLDNAGKTTLLHMLKN----DRLAQHQPT----QHPTSEELAIG--NIK-FTTFDL-GGH------QQARRLWK   79 (184)
T ss_pred             CEEEEECCCCCCHHHHHHHHhc----CCCcccCCc----cccceEEEEEC--CEE-EEEEEC-CCC------HHHHHHHH
Confidence            4678999999999999999984    333221111    22111111111  111 245676 442      11222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ..   ....|.+++-.+ ..++..+.... .+...+.. .... -+|.++|+||+|+....    ..+++++.+.-....
T Consensus        80 ~~---~~~ad~ii~vvD-~~~~~~~~~~~~~l~~l~~~-~~~~-~~piliv~NK~Dl~~~~----~~~~i~~~l~l~~~~  149 (184)
T smart00178       80 DY---FPEVNGIVYLVD-AYDKERFAESKRELDALLSD-EELA-TVPFLILGNKIDAPYAA----SEDELRYALGLTNTT  149 (184)
T ss_pred             HH---hCCCCEEEEEEE-CCcHHHHHHHHHHHHHHHcC-hhhc-CCCEEEEEeCccccCCC----CHHHHHHHcCCCccc
Confidence            22   246788777333 34444332211 11111111 0111 14599999999986532    235555554311100


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ...   .........++++||++|.|++++.+||..
T Consensus       150 ~~~---~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~  182 (184)
T smart00178      150 GSK---GKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ  182 (184)
T ss_pred             ccc---cccCCceeEEEEeecccCCChHHHHHHHHh
Confidence            000   000112346899999999999999999854

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04110 Rab35 Rab35 subfamily

Probab=99.12  E-value=2.1e-10  Score=94.10  Aligned_cols=156  Identities=14%  Similarity=0.136  Sum_probs=78.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhh--hhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAM--INEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~--~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      .-++++|.+|+|||||+++++..    ++   ......|.+.+...  +...+... ...++|+ +|.      ..+...
T Consensus         7 ~kivvvG~~~vGKTsli~~l~~~----~~---~~~~~~t~~~~~~~~~~~~~~~~~-~l~l~D~-~G~------~~~~~~   71 (199)
T cd04110           7 FKLLIIGDSGVGKSSLLLRFADN----TF---SGSYITTIGVDFKIRTVEINGERV-KLQIWDT-AGQ------ERFRTI   71 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC----CC---CCCcCccccceeEEEEEEECCEEE-EEEEEeC-CCc------hhHHHH
Confidence            35789999999999999999843    11   01111112222111  11111111 1245676 331      112222


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      .....   ...+.+++ +.++.++..+.........+...   ....+.+||.||+|+.+....  ..+......+..+ 
T Consensus        72 ~~~~~---~~a~~iil-v~D~~~~~s~~~~~~~~~~i~~~---~~~~piivVgNK~Dl~~~~~~--~~~~~~~~~~~~~-  141 (199)
T cd04110          72 TSTYY---RGTHGVIV-VYDVTNGESFVNVKRWLQEIEQN---CDDVCKVLVGNKNDDPERKVV--ETEDAYKFAGQMG-  141 (199)
T ss_pred             HHHHh---CCCcEEEE-EEECCCHHHHHHHHHHHHHHHHh---CCCCCEEEEEECccccccccc--CHHHHHHHHHHcC-
Confidence            22222   35676666 23344554433221111111111   112457899999999765321  1233333333221 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                    .+++.+||++|.|++++..++..
T Consensus       142 --------------~~~~e~Sa~~~~gi~~lf~~l~~  164 (199)
T cd04110         142 --------------ISLFETSAKENINVEEMFNCITE  164 (199)
T ss_pred             --------------CEEEEEECCCCcCHHHHHHHHHH
Confidence                          14788999999999999988764

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.12  E-value=4e-10  Score=88.73  Aligned_cols=54  Identities=17%  Similarity=0.091  Sum_probs=36.0

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +|.++|+||+|+.+..+  .......+..+..+  .             +++.+||++|.|++++..++..
T Consensus       106 ~piiiv~NK~D~~~~~~--~~~~~~~~~~~~~~--~-------------~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139         106 VPLLLVGNKCDLEDKRQ--VSSEEAANLARQWG--V-------------PYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             CCEEEEEEccccccccc--cCHHHHHHHHHHhC--C-------------eEEEeeCCCCCCHHHHHHHHHH
Confidence            55899999999976321  12233333333221  1             4688999999999999988754

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.12  E-value=2.4e-10  Score=90.18  Aligned_cols=156  Identities=16%  Similarity=0.127  Sum_probs=76.8

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEE-EecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAV-ILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~i-i~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      ++++|++|||||||+|+++...    ... .....|.  ......+........ ..++|+ +|.      ..+.. +..
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~----~~~~~~~t~~~--~~~~~~v~~~~~~~~-~~i~D~-~G~------~~~~~-~~~   68 (163)
T cd01860           4 LVLLGDSSVGKSSLVLRFVKNE----FSENQESTIGA--AFLTQTVNLDDTTVK-FEIWDT-AGQ------ERYRS-LAP   68 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHcCC----CCCCCCCccce--eEEEEEEEECCEEEE-EEEEeC-Cch------HHHHH-HHH
Confidence            6799999999999999999542    110 0111111  011111111111111 135565 331      11222 222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ...  ...|.+++- .+..++..+.........+.....  ..++.++++||+|+.+....  ..+...+..+..+    
T Consensus        69 ~~~--~~~~~~i~v-~d~~~~~s~~~~~~~~~~~~~~~~--~~~~iivv~nK~D~~~~~~~--~~~~~~~~~~~~~----  137 (163)
T cd01860          69 MYY--RGAAAAIVV-YDITSEESFEKAKSWVKELQRNAS--PNIIIALVGNKADLESKRQV--STEEAQEYADENG----  137 (163)
T ss_pred             HHh--ccCCEEEEE-EECcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccCcC--CHHHHHHHHHHcC----
Confidence            221  356777662 223344433222111111211111  12558889999998754321  2334444443322    


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                 ..++++||++|.|+.++.+++..
T Consensus       138 -----------~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860         138 -----------LLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             -----------CEEEEEECCCCCCHHHHHHHHHH
Confidence                       14688999999999999988754

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.12  E-value=3.4e-10  Score=89.27  Aligned_cols=158  Identities=16%  Similarity=0.097  Sum_probs=75.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++++|.+|+|||||+++++...    .  ......++...-.......+... ...++|+ +|.      .++......
T Consensus         4 ki~i~G~~~~GKtsl~~~~~~~~----~--~~~~~~t~~~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~~~   69 (164)
T cd04145           4 KLVVVGGGGVGKSALTIQFIQSY----F--VTDYDPTIEDSYTKQCEIDGQWA-ILDILDT-AGQ------EEFSAMREQ   69 (164)
T ss_pred             EEEEECCCCCcHHHHHHHHHhCC----C--CcccCCCccceEEEEEEECCEEE-EEEEEEC-CCC------cchhHHHHH
Confidence            36899999999999999998431    1  11111111100000001111111 1245677 332      223333333


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ...   ..|.+++-. .+.++..+.........+.... ...-+|.++++||+|+.+....  ..+...+..+..     
T Consensus        70 ~~~---~~~~~ilv~-d~~~~~s~~~~~~~~~~~~~~~-~~~~~piiiv~NK~Dl~~~~~~--~~~~~~~~~~~~-----  137 (164)
T cd04145          70 YMR---TGEGFLLVF-SVTDRGSFEEVDKFHTQILRVK-DRDEFPMILVGNKADLEHQRKV--SREEGQELARKL-----  137 (164)
T ss_pred             HHh---hCCEEEEEE-ECCCHHHHHHHHHHHHHHHHHh-CCCCCCEEEEeeCcccccccee--cHHHHHHHHHHc-----
Confidence            332   345555522 2334433222111011111110 0112458999999999765321  122333333321     


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                               . .+++.+||++|.|++++..++..
T Consensus       138 ---------~-~~~~~~Sa~~~~~i~~l~~~l~~  161 (164)
T cd04145         138 ---------K-IPYIETSAKDRLNVDKAFHDLVR  161 (164)
T ss_pred             ---------C-CcEEEeeCCCCCCHHHHHHHHHH
Confidence                     1 14688999999999999877643

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.12  E-value=3e-10  Score=89.74  Aligned_cols=54  Identities=22%  Similarity=0.122  Sum_probs=35.5

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .|.++|.||+|+.+....  ..+...+..+..+               .+.+.+||++|.|++++.+++..
T Consensus       106 ~pii~v~nK~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173      106 VPIVLVGNKCDLESERVV--STEEGKELARQWG---------------CPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             CCEEEEEECccccccceE--cHHHHHHHHHHcC---------------CEEEEeecCCCCCHHHHHHHHHH
Confidence            458899999999764321  1223333333221               14688999999999999887754

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04175 Rap1 Rap1 subgroup

Probab=99.11  E-value=3.4e-10  Score=89.58  Aligned_cols=156  Identities=16%  Similarity=0.146  Sum_probs=74.9

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      ++++|.+|||||||+++++...      .......+ .... ...+...+ ......+.|+ +|.      ..+. .+..
T Consensus         4 i~~~G~~~~GKTsli~~~~~~~------~~~~~~~t-~~~~~~~~~~~~~-~~~~l~i~Dt-~G~------~~~~-~~~~   67 (164)
T cd04175           4 LVVLGSGGVGKSALTVQFVQGI------FVEKYDPT-IEDSYRKQVEVDG-QQCMLEILDT-AGT------EQFT-AMRD   67 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC------CCcccCCc-chheEEEEEEECC-EEEEEEEEEC-CCc------ccch-hHHH
Confidence            6799999999999999998421      11111122 1110 00111111 1111246677 432      1122 2222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ..-  ...|.+++-.+ +.++..+.........+..... ..-+|.++|.||+|+.+....  ..+...+..+..+    
T Consensus        68 ~~~--~~~d~~ilv~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~----  137 (164)
T cd04175          68 LYM--KNGQGFVLVYS-ITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVV--GKEQGQNLARQWG----  137 (164)
T ss_pred             HHH--hhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhccEE--cHHHHHHHHHHhC----
Confidence            221  24555555222 3344333221111111111111 112568999999999764321  1222222222221    


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                 .+++.+||++|.|++++..++..
T Consensus       138 -----------~~~~~~Sa~~~~~v~~~~~~l~~  160 (164)
T cd04175         138 -----------CAFLETSAKAKINVNEIFYDLVR  160 (164)
T ss_pred             -----------CEEEEeeCCCCCCHHHHHHHHHH
Confidence                       13678999999999999888753

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd00880 Era_like Era (E

Probab=99.11  E-value=6.7e-10  Score=86.13  Aligned_cols=157  Identities=22%  Similarity=0.183  Sum_probs=78.0

Q ss_pred             EEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec-chhHHHHHHHHH
Q 024744           37 ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV-KHSLVQALEQLV  115 (263)
Q Consensus        37 i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~~~~~~~l~~~~  115 (263)
                      |+|++|||||||+|+|+.    ..........+.+............ .. -..++|+ +|...... ............
T Consensus         1 i~G~~gsGKstl~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~Dt-~g~~~~~~~~~~~~~~~~~~~   73 (163)
T cd00880           1 LFGRTNAGKSSLLNALLG----QEVAIVSPVPGTTTDPVEYVWELGP-LG-PVVLIDT-PGIDEAGGLGREREELARRVL   73 (163)
T ss_pred             CcCCCCCCHHHHHHHHhC----ccccccCCCCCcEECCeEEEEEecC-CC-cEEEEEC-CCCCccccchhhHHHHHHHHH
Confidence            589999999999999984    3333334444433222221111110 11 1246777 44321111 111112222232


Q ss_pred             HhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHH---HHHhhcCCC
Q 024744          116 QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEK---EIHEINSLA  192 (263)
Q Consensus       116 ~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~---~l~~~~p~~  192 (263)
                         ..+|.+++-.+... +......... ....     ...++.++++||+|+....+    ......   ......   
T Consensus        74 ---~~~d~il~v~~~~~-~~~~~~~~~~-~~~~-----~~~~~~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~---  136 (163)
T cd00880          74 ---ERADLILFVVDADL-RADEEEEKLL-ELLR-----ERGKPVLLVLNKIDLLPEEE----EEELLELRLLILLLL---  136 (163)
T ss_pred             ---HhCCEEEEEEeCCC-CCCHHHHHHH-HHHH-----hcCCeEEEEEEccccCChhh----HHHHHHHHHhhcccc---
Confidence               36788777333322 2211111100 0000     11245899999999987642    122211   111111   


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                ...+++.+||.++.|+.++.+++..
T Consensus       137 ----------~~~~~~~~sa~~~~~v~~l~~~l~~  161 (163)
T cd00880         137 ----------LGLPVIAVSALTGEGIDELREALIE  161 (163)
T ss_pred             ----------cCCceEEEeeeccCCHHHHHHHHHh
Confidence                      2346788999999999999887653

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.11  E-value=2.2e-10  Score=91.86  Aligned_cols=155  Identities=18%  Similarity=0.168  Sum_probs=76.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++++|.+|+|||||++++....    ..-..+.    .+.+.......  ... ..++|+ +|.      ..+......
T Consensus        17 kv~~~G~~~~GKTsl~~~l~~~~----~~~~~~t----~~~~~~~~~~~--~~~-~~l~D~-~G~------~~~~~~~~~   78 (174)
T cd04153          17 KVIIVGLDNAGKTTILYQFLLGE----VVHTSPT----IGSNVEEIVYK--NIR-FLMWDI-GGQ------ESLRSSWNT   78 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHccCC----CCCcCCc----cccceEEEEEC--CeE-EEEEEC-CCC------HHHHHHHHH
Confidence            57799999999999999998431    1101111    22111111111  111 245676 442      122222222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..   ...|.+++-.+ ..++..+.... .+...+... .. ..+|.++++||+|+.+..    ..+++.+.+....  +
T Consensus        79 ~~---~~~d~vi~V~D-~s~~~~~~~~~~~l~~~~~~~-~~-~~~p~viv~NK~Dl~~~~----~~~~i~~~l~~~~--~  146 (174)
T cd04153          79 YY---TNTDAVILVID-STDRERLPLTKEELYKMLAHE-DL-RKAVLLVLANKQDLKGAM----TPAEISESLGLTS--I  146 (174)
T ss_pred             Hh---hcCCEEEEEEE-CCCHHHHHHHHHHHHHHHhch-hh-cCCCEEEEEECCCCCCCC----CHHHHHHHhCccc--c
Confidence            22   36788777333 33333221110 011111111 01 114589999999987532    1234444332110  0


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      .     ..  . -.++++||++|.|++++.++|.
T Consensus       147 ~-----~~--~-~~~~~~SA~~g~gi~e~~~~l~  172 (174)
T cd04153         147 R-----DH--T-WHIQGCCALTGEGLPEGLDWIA  172 (174)
T ss_pred             c-----CC--c-eEEEecccCCCCCHHHHHHHHh
Confidence            0     00  1 1467899999999999998874

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04155 Arl3 Arl3 subfamily

Probab=99.11  E-value=1.8e-10  Score=91.93  Aligned_cols=157  Identities=17%  Similarity=0.196  Sum_probs=76.0

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ..-++++|++|||||||++++.+.    ......+..|    .....+...  +.. ..++++ +|.      ..+....
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~----~~~~~~~t~g----~~~~~i~~~--~~~-~~~~D~-~G~------~~~~~~~   75 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASE----DISHITPTQG----FNIKTVQSD--GFK-LNVWDI-GGQ------RAIRPYW   75 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcC----CCcccCCCCC----cceEEEEEC--CEE-EEEEEC-CCC------HHHHHHH
Confidence            346899999999999999999843    2111112122    111111111  111 134555 331      1222222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ...+   ..+|.+++-.+ ..++..+.... .....+... . ..-+|.++++||+|+.+...    .+.+.+.++ +..
T Consensus        76 ~~~~---~~~~~ii~v~D-~~~~~~~~~~~~~~~~~~~~~-~-~~~~p~ivv~nK~D~~~~~~----~~~i~~~l~-~~~  144 (173)
T cd04155          76 RNYF---ENTDCLIYVID-SADKKRLEEAGAELVELLEEE-K-LAGVPVLVFANKQDLATAAP----AEEIAEALN-LHD  144 (173)
T ss_pred             HHHh---cCCCEEEEEEe-CCCHHHHHHHHHHHHHHHhCh-h-hcCCCEEEEEECCCCccCCC----HHHHHHHcC-Ccc
Confidence            2222   35676666332 23332221111 111111111 0 01155889999999976542    234433332 110


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      ..       .  ..-.++.+||++|+|++++.+|+.
T Consensus       145 ~~-------~--~~~~~~~~Sa~~~~gi~~~~~~l~  171 (173)
T cd04155         145 LR-------D--RTWHIQACSAKTGEGLQEGMNWVC  171 (173)
T ss_pred             cC-------C--CeEEEEEeECCCCCCHHHHHHHHh
Confidence            00       0  011356899999999999998874

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.11  E-value=1.9e-10  Score=93.52  Aligned_cols=167  Identities=18%  Similarity=0.242  Sum_probs=82.8

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCC-CeEE-------EEecC-----CCcccccchhhhhcCCCCcceeeeeeecCc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHG-KRIA-------VILNE-----FGEEIGVERAMINEGEGGALVEEWVELANG   97 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~-~~~~-------ii~~~-----~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g   97 (263)
                      .+..|+++|..++|||||+++|+..... .+.+       .....     .+.|.......... ........++|+ ||
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~-~~~~~~i~~iDt-PG   79 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK-NENNRKITLIDT-PG   79 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB-TESSEEEEEEEE-SS
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc-cccccceeeccc-cc
Confidence            3568999999999999999999853110 0000       00000     01001000000110 001111256777 44


Q ss_pred             ceEeecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcch
Q 024744           98 CICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDS  177 (263)
Q Consensus        98 ~~~~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~  177 (263)
                      -      .++...+...   ...+|.+++-.++...+........  ..+ ....    ++.++++||+|+...     .
T Consensus        80 ~------~~f~~~~~~~---~~~~D~ailvVda~~g~~~~~~~~l--~~~-~~~~----~p~ivvlNK~D~~~~-----~  138 (188)
T PF00009_consen   80 H------EDFIKEMIRG---LRQADIAILVVDANDGIQPQTEEHL--KIL-RELG----IPIIVVLNKMDLIEK-----E  138 (188)
T ss_dssp             S------HHHHHHHHHH---HTTSSEEEEEEETTTBSTHHHHHHH--HHH-HHTT-----SEEEEEETCTSSHH-----H
T ss_pred             c------cceeecccce---ecccccceeeeeccccccccccccc--ccc-cccc----cceEEeeeeccchhh-----h
Confidence            2      3343333333   3477888775544433333211111  111 1112    348999999999832     2


Q ss_pred             HHHHHHHHH-hh---cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          178 LDELEKEIH-EI---NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       178 ~~~~~~~l~-~~---~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      +++..+.++ .+   ....        .-..-+++++||.+|.|++.|.+.+..+
T Consensus       139 ~~~~~~~~~~~l~~~~~~~--------~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~  185 (188)
T PF00009_consen  139 LEEIIEEIKEKLLKEYGEN--------GEEIVPVIPISALTGDGIDELLEALVEL  185 (188)
T ss_dssp             HHHHHHHHHHHHHHHTTST--------TTSTEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccC--------ccccceEEEEecCCCCCHHHHHHHHHHh
Confidence            333333333 11   1110        0013468999999999999999888654

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.11  E-value=2.2e-10  Score=90.24  Aligned_cols=154  Identities=16%  Similarity=0.206  Sum_probs=76.3

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcC--CCCcceeeeeeecCcceEeecchhHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEG--EGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~--~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      ++++|.+|+|||||++++.....       ..+...|.+.+..  .+...  .... -..++|+ +|.      ..+...
T Consensus         3 v~~vG~~~~GKTsl~~~~~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~~~-~~~i~D~-~G~------~~~~~~   67 (162)
T cd04106           3 VIVVGNGNVGKSSMIQRFVKGIF-------TKDYKKTIGVDFLEKQIFLRQSDEDV-RLMLWDT-AGQ------EEFDAI   67 (162)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC-------CCCCCCcEEEEEEEEEEEEcCCCCEE-EEEEeeC-Cch------HHHHHh
Confidence            68999999999999999985311       0010111211110  01000  1111 1245676 331      222222


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      .....   ...|.+++-.+ +.++..+.........+...   ..-+|.++|+||+|+.+....  ..++.....+..+ 
T Consensus        68 ~~~~~---~~~~~~v~v~d-~~~~~s~~~l~~~~~~~~~~---~~~~p~iiv~nK~Dl~~~~~v--~~~~~~~~~~~~~-  137 (162)
T cd04106          68 TKAYY---RGAQACILVFS-TTDRESFEAIESWKEKVEAE---CGDIPMVLVQTKIDLLDQAVI--TNEEAEALAKRLQ-  137 (162)
T ss_pred             HHHHh---cCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHh---CCCCCEEEEEEChhcccccCC--CHHHHHHHHHHcC-
Confidence            22222   35666666332 34444332211111111111   012558999999999765432  1233333333221 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                       .             +++++||++|.|++++.+++..
T Consensus       138 -~-------------~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         138 -L-------------PLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             -C-------------eEEEEECCCCCCHHHHHHHHHH
Confidence             1             3678999999999999887753

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.10  E-value=1.4e-10  Score=109.70  Aligned_cols=151  Identities=21%  Similarity=0.184  Sum_probs=82.8

Q ss_pred             ccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceE-eecchhHHHHHHHHHHh
Q 024744           39 GFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKHSLVQALEQLVQR  117 (263)
Q Consensus        39 G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~-~~~~~~~~~~l~~~~~~  117 (263)
                      |.||+|||||+|++++    .+. .+.+.+|+|++.....+..++  .. ..++|+ +|..- ....  ..+.+.+....
T Consensus         1 G~pNvGKSSL~N~Ltg----~~~-~v~n~pG~Tv~~~~~~i~~~~--~~-i~lvDt-PG~~~~~~~s--~~e~v~~~~l~   69 (591)
T TIGR00437         1 GNPNVGKSTLFNALTG----ANQ-TVGNWPGVTVEKKEGKLGFQG--ED-IEIVDL-PGIYSLTTFS--LEEEVARDYLL   69 (591)
T ss_pred             CCCCCCHHHHHHHHhC----CCC-eecCCCCeEEEEEEEEEEECC--eE-EEEEEC-CCccccCccc--hHHHHHHHHHh
Confidence            8999999999999994    332 467778876655443333322  11 257888 55321 1111  11122221112


Q ss_pred             ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEe
Q 024744          118 KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRS  197 (263)
Q Consensus       118 ~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~  197 (263)
                      ...+|.++.    +.|............++.+     ..++.++++||+|+.+......+.    +.+.+...       
T Consensus        70 ~~~aDvvI~----VvDat~ler~l~l~~ql~~-----~~~PiIIVlNK~Dl~~~~~i~~d~----~~L~~~lg-------  129 (591)
T TIGR00437        70 NEKPDLVVN----VVDASNLERNLYLTLQLLE-----LGIPMILALNLVDEAEKKGIRIDE----EKLEERLG-------  129 (591)
T ss_pred             hcCCCEEEE----EecCCcchhhHHHHHHHHh-----cCCCEEEEEehhHHHHhCCChhhH----HHHHHHcC-------
Confidence            346898888    4443332111111111111     114589999999987654321111    22222211       


Q ss_pred             ecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          198 VRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       198 ~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                             .+++++||++|+|++++.+.+.+
T Consensus       130 -------~pvv~tSA~tg~Gi~eL~~~i~~  152 (591)
T TIGR00437       130 -------VPVVPTSATEGRGIERLKDAIRK  152 (591)
T ss_pred             -------CCEEEEECCCCCCHHHHHHHHHH
Confidence                   14788999999999999988764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01865 Rab3 Rab3 subfamily

Probab=99.10  E-value=4.8e-10  Score=88.98  Aligned_cols=155  Identities=12%  Similarity=0.099  Sum_probs=76.6

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|.+|||||||+++++......     ...+  |.+.+.  ..+...+.... ..++|+ +|.      ..+.. +.
T Consensus         4 i~i~G~~~~GKSsli~~l~~~~~~~-----~~~~--t~~~~~~~~~~~~~~~~~~-~~l~Dt-~g~------~~~~~-~~   67 (165)
T cd01865           4 LLIIGNSSVGKTSFLFRYADDSFTS-----AFVS--TVGIDFKVKTVFRNDKRVK-LQIWDT-AGQ------ERYRT-IT   67 (165)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCC-----CCCC--ceeeEEEEEEEEECCEEEE-EEEEEC-CCh------HHHHH-HH
Confidence            6899999999999999999542100     0001  111111  01111111111 245676 331      12221 22


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...  ....|.+++..+ +.++..+.........+....  ....+.++|.||+|+.+....  ..++..+..+.+    
T Consensus        68 ~~~--~~~~~~~l~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~----  136 (165)
T cd01865          68 TAY--YRGAMGFILMYD-ITNEESFNAVQDWSTQIKTYS--WDNAQVILVGNKCDMEDERVV--SSERGRQLADQL----  136 (165)
T ss_pred             HHH--ccCCcEEEEEEE-CCCHHHHHHHHHHHHHHHHhC--CCCCCEEEEEECcccCccccc--CHHHHHHHHHHc----
Confidence            111  246677766333 344444332211111121111  112458999999999765321  122222222221    


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                +. +++.+||++|.|++++.+++..
T Consensus       137 ----------~~-~~~~~Sa~~~~gv~~l~~~l~~  160 (165)
T cd01865         137 ----------GF-EFFEASAKENINVKQVFERLVD  160 (165)
T ss_pred             ----------CC-EEEEEECCCCCCHHHHHHHHHH
Confidence                      11 3678999999999999888754

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.10  E-value=6.1e-10  Score=88.53  Aligned_cols=156  Identities=17%  Similarity=0.124  Sum_probs=77.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      -++++|.+|+|||||++++....    .   ......|.+.+.  ..+...+... ...+.|++ |      ...+....
T Consensus         5 ki~vvG~~~~GKSsl~~~~~~~~----f---~~~~~~t~~~~~~~~~~~~~~~~~-~l~l~D~~-g------~~~~~~~~   69 (167)
T cd01867           5 KLLLIGDSGVGKSCLLLRFSEDS----F---NPSFISTIGIDFKIRTIELDGKKI-KLQIWDTA-G------QERFRTIT   69 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHhhCc----C---CcccccCccceEEEEEEEECCEEE-EEEEEeCC-c------hHHHHHHH
Confidence            47899999999999999998431    1   001011111111  1111111111 12355653 2      12222222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ...+   ..+|.+++-.+ +.++..+.........+...  ...-.+.++|.||+|+.+....  ..++..+..+...  
T Consensus        70 ~~~~---~~ad~~i~v~d-~~~~~s~~~~~~~~~~i~~~--~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--  139 (167)
T cd01867          70 TAYY---RGAMGIILVYD-ITDEKSFENIRNWMRNIEEH--ASEDVERMLVGNKCDMEEKRVV--SKEEGEALADEYG--  139 (167)
T ss_pred             HHHh---CCCCEEEEEEE-CcCHHHHHhHHHHHHHHHHh--CCCCCcEEEEEECcccccccCC--CHHHHHHHHHHcC--
Confidence            2222   36788777332 34444432221111111111  0112458999999999864321  2233333333221  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   .+.+.+||++|.|++++..++..
T Consensus       140 -------------~~~~~~Sa~~~~~v~~~~~~i~~  162 (167)
T cd01867         140 -------------IKFLETSAKANINVEEAFFTLAK  162 (167)
T ss_pred             -------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence                         13688999999999999877654

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd00879 Sar1 Sar1 subfamily

Probab=99.10  E-value=2.9e-10  Score=92.31  Aligned_cols=167  Identities=18%  Similarity=0.212  Sum_probs=78.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-++++|++|||||||++++...    +...  ..+  |.+.....+...  +.. ..++++ +|.      ........
T Consensus        20 ~ki~ilG~~~~GKStLi~~l~~~----~~~~--~~~--T~~~~~~~i~~~--~~~-~~l~D~-~G~------~~~~~~~~   81 (190)
T cd00879          20 AKILFLGLDNAGKTTLLHMLKDD----RLAQ--HVP--TLHPTSEELTIG--NIK-FKTFDL-GGH------EQARRLWK   81 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC----CCcc--cCC--ccCcceEEEEEC--CEE-EEEEEC-CCC------HHHHHHHH
Confidence            45699999999999999999843    2111  111  122111111111  111 134565 331      11111112


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ...   ...|.+++-.+ ..++..+.... ++...+... .. .-.|.++++||+|+....    ..+++++.++.....
T Consensus        82 ~~~---~~ad~iilV~D-~~~~~s~~~~~~~~~~i~~~~-~~-~~~pvivv~NK~Dl~~~~----~~~~~~~~~~~~~~~  151 (190)
T cd00879          82 DYF---PEVDGIVFLVD-AADPERFQESKEELDSLLSDE-EL-ANVPFLILGNKIDLPGAV----SEEELRQALGLYGTT  151 (190)
T ss_pred             HHh---ccCCEEEEEEE-CCcHHHHHHHHHHHHHHHcCc-cc-cCCCEEEEEeCCCCCCCc----CHHHHHHHhCccccc
Confidence            221   35677766333 23332221111 111111110 11 114589999999987542    235555555421100


Q ss_pred             C-eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 A-HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~-~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      . .++.........-.++.+||++|+|++++..|+.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~  188 (190)
T cd00879         152 TGKGVSLKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQ  188 (190)
T ss_pred             ccccccccccCceeEEEEEeEecCCCChHHHHHHHHh
Confidence            0 00000000001124788999999999999998864

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>PLN03118 Rab family protein; Provisional

Probab=99.10  E-value=4.8e-10  Score=92.84  Aligned_cols=158  Identities=16%  Similarity=0.117  Sum_probs=76.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++|+|.+|+|||||+++++..    ++.......|.  ......+...+... -..++|+ +|.      ..+......
T Consensus        16 kv~ivG~~~vGKTsli~~l~~~----~~~~~~~t~~~--~~~~~~~~~~~~~~-~l~l~Dt-~G~------~~~~~~~~~   81 (211)
T PLN03118         16 KILLIGDSGVGKSSLLVSFISS----SVEDLAPTIGV--DFKIKQLTVGGKRL-KLTIWDT-AGQ------ERFRTLTSS   81 (211)
T ss_pred             EEEEECcCCCCHHHHHHHHHhC----CCCCcCCCcee--EEEEEEEEECCEEE-EEEEEEC-CCc------hhhHHHHHH
Confidence            3679999999999999999843    22111111111  11111111111111 1246777 332      222222222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhh-cccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLW-LDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~-~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..   ...|.+++- .++.++..+..... ....+... ......+.++|.||+|+......  ..+......+..  ..
T Consensus        82 ~~---~~~d~~vlv-~D~~~~~sf~~~~~~~~~~~~~~-~~~~~~~~ilv~NK~Dl~~~~~i--~~~~~~~~~~~~--~~  152 (211)
T PLN03118         82 YY---RNAQGIILV-YDVTRRETFTNLSDVWGKEVELY-STNQDCVKMLVGNKVDRESERDV--SREEGMALAKEH--GC  152 (211)
T ss_pred             HH---hcCCEEEEE-EECCCHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECccccccCcc--CHHHHHHHHHHc--CC
Confidence            22   356776662 33445444332210 01111110 00111347889999999765322  122222222221  11


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   .++.+||++|.|++++..++..
T Consensus       153 -------------~~~e~SAk~~~~v~~l~~~l~~  174 (211)
T PLN03118        153 -------------LFLECSAKTRENVEQCFEELAL  174 (211)
T ss_pred             -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence                         3678999999999999988764

>cd04109 Rab28 Rab28 subfamily

Probab=99.09  E-value=7.8e-10  Score=91.86  Aligned_cols=159  Identities=14%  Similarity=0.125  Sum_probs=79.0

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|.+|+|||||+++++...-.       .....|.+.+..  .+...+.......+.|+ +|      ...+.....
T Consensus         3 i~ivG~~~vGKSsLi~~l~~~~~~-------~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt-~G------~~~~~~l~~   68 (215)
T cd04109           3 IVVLGDGAVGKTSLCRRFAKEGFG-------KSYKQTIGLDFFSKRVTLPGNLNVTLQVWDI-GG------QSIGGKMLD   68 (215)
T ss_pred             EEEECcCCCCHHHHHHHHhcCCCC-------CCCCCceeEEEEEEEEEeCCCCEEEEEEEEC-CC------cHHHHHHHH
Confidence            679999999999999999853110       011111222211  11111111111246676 33      122222233


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceee-CeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRL-DSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~-~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ...   ..+|.+++-.+ +.++..+.........+...... ....+.++|.||+|+.+....  ..+...+..+.. . 
T Consensus        69 ~~~---~~ad~iilV~D-~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v--~~~~~~~~~~~~-~-  140 (215)
T cd04109          69 KYI---YGAHAVFLVYD-VTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTV--KDDKHARFAQAN-G-  140 (215)
T ss_pred             HHh---hcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccccccc--CHHHHHHHHHHc-C-
Confidence            332   36788777333 45554443221111122221110 112347889999999754321  122233322221 1 


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      .             ..+.+||++|+|++++.+++...
T Consensus       141 ~-------------~~~~iSAktg~gv~~lf~~l~~~  164 (215)
T cd04109         141 M-------------ESCLVSAKTGDRVNLLFQQLAAE  164 (215)
T ss_pred             C-------------EEEEEECCCCCCHHHHHHHHHHH
Confidence            1             35678999999999999887753

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.09  E-value=8.9e-10  Score=89.15  Aligned_cols=159  Identities=17%  Similarity=0.124  Sum_probs=76.4

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhc---CCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINE---GEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~---~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ++++|.+|||||||+++++...    .  ....+ + .+.+......   ...... ..++|+ +|.      +.+....
T Consensus         6 v~~vG~~~~GKTsli~~~~~~~----~--~~~~~-t-~~~~~~~~~~~~~~~~~~~-l~l~Dt-~G~------~~~~~~~   69 (183)
T cd04152           6 IVMLGLDSAGKTTVLYRLKFNE----F--VNTVP-T-KGFNTEKIKVSLGNSKGIT-FHFWDV-GGQ------EKLRPLW   69 (183)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC----c--CCcCC-c-cccceeEEEeeccCCCceE-EEEEEC-CCc------HhHHHHH
Confidence            6789999999999999998431    1  11111 1 1111111111   111111 246777 332      2222222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ....   ...|.+++-.+ ..++..+.........+...... .-+|.++|+||+|+.+..    ..+.+...+. ++..
T Consensus        70 ~~~~---~~~d~ii~v~D-~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~~~~----~~~~~~~~~~-~~~~  139 (183)
T cd04152          70 KSYT---RCTDGIVFVVD-SVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLPNAL----SVSEVEKLLA-LHEL  139 (183)
T ss_pred             HHHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCccccC----CHHHHHHHhC-cccc
Confidence            2221   35777777333 33333322211100111111111 125699999999986532    1233333322 1110


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .        ......++++||++|.|++++..++..
T Consensus       140 ~--------~~~~~~~~~~SA~~~~gi~~l~~~l~~  167 (183)
T cd04152         140 S--------ASTPWHVQPACAIIGEGLQEGLEKLYE  167 (183)
T ss_pred             C--------CCCceEEEEeecccCCCHHHHHHHHHH
Confidence            0        001124678999999999999887653

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01863 Rab18 Rab18 subfamily

Probab=99.09  E-value=6.4e-10  Score=87.59  Aligned_cols=156  Identities=13%  Similarity=0.091  Sum_probs=77.0

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|++|||||||+++++......   -..+..+.+.  ....+....... -..++|+ +|-      ..+.......
T Consensus         3 i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~-~~~l~D~-~g~------~~~~~~~~~~   69 (161)
T cd01863           3 ILLIGDSGVGKSSLLLRFTDDTFDP---DLAATIGVDF--KVKTLTVDGKKV-KLAIWDT-AGQ------ERFRTLTSSY   69 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCCc---ccCCcccceE--EEEEEEECCEEE-EEEEEEC-CCc------hhhhhhhHHH
Confidence            6899999999999999998532110   0111122111  100111111111 1245666 331      1222222222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  194 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i  194 (263)
                      +   ...|.+++-.+ +.++..+.........+..... ....+.++|.||+|+.....   ..+...+..+..  .+  
T Consensus        70 ~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~~---~~~~~~~~~~~~--~~--  137 (161)
T cd01863          70 Y---RGAQGVILVYD-VTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENREV---TREEGLKFARKH--NM--  137 (161)
T ss_pred             h---CCCCEEEEEEE-CCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCccccccc---CHHHHHHHHHHc--CC--
Confidence            2   35777777333 4444443222111111111111 11245889999999984431   223333433322  12  


Q ss_pred             EEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                 .++.+||++|.|++++.+.+.
T Consensus       138 -----------~~~~~Sa~~~~gi~~~~~~~~  158 (161)
T cd01863         138 -----------LFIETSAKTRDGVQQAFEELV  158 (161)
T ss_pred             -----------EEEEEecCCCCCHHHHHHHHH
Confidence                       368899999999999887654

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04114 Rab30 Rab30 subfamily

Probab=99.09  E-value=7.2e-10  Score=88.00  Aligned_cols=158  Identities=16%  Similarity=0.167  Sum_probs=77.4

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ..-++++|.+|+|||||+++++...       .....+.+.+.+..  .+...+... ...+.++ +|-      ..+..
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~D~-~g~------~~~~~   71 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGL-------FPPGQGATIGVDFMIKTVEIKGEKI-KLQIWDT-AGQ------ERFRS   71 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCC-------CCCCCCCceeeEEEEEEEEECCEEE-EEEEEEC-CCc------HHHHH
Confidence            3678999999999999999998431       01111111211110  011111011 1134565 221      12222


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      .....+   ...|.+++-.+ +.++..+.........+.....  .-++.++|.||+|+.+..+.   .......+....
T Consensus        72 ~~~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~l~~~~~--~~~~~i~v~NK~D~~~~~~i---~~~~~~~~~~~~  142 (169)
T cd04114          72 ITQSYY---RSANALILTYD-ITCEESFRCLPEWLREIEQYAN--NKVITILVGNKIDLAERREV---SQQRAEEFSDAQ  142 (169)
T ss_pred             HHHHHh---cCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECccccccccc---CHHHHHHHHHHc
Confidence            223332   35677666222 3333322111111111221111  11457899999999765422   122333333332


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .              ..++.+||++|.|++++..++..
T Consensus       143 ~--------------~~~~~~Sa~~~~gv~~l~~~i~~  166 (169)
T cd04114         143 D--------------MYYLETSAKESDNVEKLFLDLAC  166 (169)
T ss_pred             C--------------CeEEEeeCCCCCCHHHHHHHHHH
Confidence            2              24678999999999999887754

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04149 Arf6 Arf6 subfamily

Probab=99.08  E-value=2.7e-10  Score=90.99  Aligned_cols=153  Identities=14%  Similarity=0.087  Sum_probs=77.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++++|.+|||||||++++....    ..  ...+ + .+.+...+..  .... ..++|+ +|.      ..+.. +..
T Consensus        11 kv~i~G~~~~GKTsli~~l~~~~----~~--~~~~-t-~g~~~~~~~~--~~~~-~~l~Dt-~G~------~~~~~-~~~   71 (168)
T cd04149          11 RILMLGLDAAGKTTILYKLKLGQ----SV--TTIP-T-VGFNVETVTY--KNVK-FNVWDV-GGQ------DKIRP-LWR   71 (168)
T ss_pred             EEEEECcCCCCHHHHHHHHccCC----Cc--cccC-C-cccceEEEEE--CCEE-EEEEEC-CCC------HHHHH-HHH
Confidence            57799999999999999997421    11  1111 1 2222211111  1111 256777 442      12222 222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh--hcC
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE--INS  190 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~--~~p  190 (263)
                      ..  ...+|.+++-.+ +.++..+.+.. ++...+... ... -.+.++|.||+|+.+..    ..+++.+.++.  .++
T Consensus        72 ~~--~~~a~~ii~v~D-~t~~~s~~~~~~~~~~~~~~~-~~~-~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~  142 (168)
T cd04149          72 HY--YTGTQGLIFVVD-SADRDRIDEARQELHRIINDR-EMR-DALLLVFANKQDLPDAM----KPHEIQEKLGLTRIRD  142 (168)
T ss_pred             HH--hccCCEEEEEEe-CCchhhHHHHHHHHHHHhcCH-hhc-CCcEEEEEECcCCccCC----CHHHHHHHcCCCccCC
Confidence            21  246788777333 34443332211 111111111 011 14589999999986532    12444444321  111


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      .           . -.++++||++|.|++++..||.
T Consensus       143 ~-----------~-~~~~~~SAk~g~gv~~~~~~l~  166 (168)
T cd04149         143 R-----------N-WYVQPSCATSGDGLYEGLTWLS  166 (168)
T ss_pred             C-----------c-EEEEEeeCCCCCChHHHHHHHh
Confidence            0           1 1467899999999999998874

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.07  E-value=2.9e-10  Score=92.28  Aligned_cols=45  Identities=29%  Similarity=0.477  Sum_probs=41.7

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++|+++||+|+||+.++++++++.     +++|+||+|||||||+++|-.
T Consensus         1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126           1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence            479999999999999999999887     799999999999999999953

>cd04158 ARD1 ARD1 subfamily

Probab=99.06  E-value=3.1e-10  Score=90.54  Aligned_cols=157  Identities=15%  Similarity=0.149  Sum_probs=78.7

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|||||||++++....    .  ..  +..|.+.+...+..  .... ..++++ +|.      ..+.......
T Consensus         2 vvlvG~~~~GKTsl~~~l~~~~----~--~~--~~~T~~~~~~~~~~--~~~~-i~l~Dt-~G~------~~~~~~~~~~   63 (169)
T cd04158           2 VVTLGLDGAGKTTILFKLKQDE----F--MQ--PIPTIGFNVETVEY--KNLK-FTIWDV-GGK------HKLRPLWKHY   63 (169)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC----C--CC--cCCcCceeEEEEEE--CCEE-EEEEEC-CCC------hhcchHHHHH
Confidence            5799999999999999998531    1  11  11123322221211  1111 246777 442      1111222222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      .   ...|.+++..+ ..++..+.+.. ++...+... ... -.+.+|+.||+|+....    ..+.+.+.++ .+... 
T Consensus        64 ~---~~ad~ii~V~D-~s~~~s~~~~~~~~~~~~~~~-~~~-~~piilv~NK~Dl~~~~----~~~~~~~~~~-~~~~~-  131 (169)
T cd04158          64 Y---LNTQAVVFVVD-SSHRDRVSEAHSELAKLLTEK-ELR-DALLLIFANKQDVAGAL----SVEEMTELLS-LHKLC-  131 (169)
T ss_pred             h---ccCCEEEEEEe-CCcHHHHHHHHHHHHHHhcCh-hhC-CCCEEEEEeCcCcccCC----CHHHHHHHhC-Ccccc-
Confidence            2   35678777433 33343332211 111111110 111 14589999999986542    2344444432 11100 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                             ......++.+||++|.|++++.+||...
T Consensus       132 -------~~~~~~~~~~Sa~~g~gv~~~f~~l~~~  159 (169)
T cd04158         132 -------CGRSWYIQGCDARSGMGLYEGLDWLSRQ  159 (169)
T ss_pred             -------CCCcEEEEeCcCCCCCCHHHHHHHHHHH
Confidence                   0001135678999999999999998754

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.06  E-value=8.1e-10  Score=87.25  Aligned_cols=157  Identities=13%  Similarity=0.100  Sum_probs=74.5

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|.+|||||||++++.....  ..  ..+...+ .+.+.  ..+........-..++|+ +|.      ..+.....
T Consensus         3 i~vvG~~~~GKtsl~~~l~~~~~--~~--~~~~~~t-~~~~~~~~~~~~~~~~~~~l~i~Dt-~G~------~~~~~~~~   70 (164)
T cd04101           3 CAVVGDPAVGKTAFVQMFHSNGA--VF--PKNYLMT-TGCDFVVKEVPVDTDNTVELFIFDS-AGQ------ELYSDMVS   70 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC--Cc--CccCCCc-eEEEEEEEEEEeCCCCEEEEEEEEC-CCH------HHHHHHHH
Confidence            68999999999999999984310  00  0000001 11111  001000001111235666 331      22222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..+   ...|.+++-.+ +.++..+.........+....   ..++.++|+||+|+.+..+..  ...... +...+ . 
T Consensus        71 ~~~---~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~--~~~~~~-~~~~~-~-  138 (164)
T cd04101          71 NYW---ESPSVFILVYD-VSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADKAEVT--DAQAQA-FAQAN-Q-  138 (164)
T ss_pred             HHh---CCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccccCCC--HHHHHH-HHHHc-C-
Confidence            222   46788877333 333333322111111111110   114589999999997654321  111111 21111 1 


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  .+++.+||++|.|++++...+..
T Consensus       139 ------------~~~~~~Sa~~~~gi~~l~~~l~~  161 (164)
T cd04101         139 ------------LKFFKTSALRGVGYEEPFESLAR  161 (164)
T ss_pred             ------------CeEEEEeCCCCCChHHHHHHHHH
Confidence                        13678999999999999877654

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.06  E-value=5.8e-10  Score=88.13  Aligned_cols=154  Identities=14%  Similarity=0.134  Sum_probs=75.5

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|||||||++++...   ...   ...+  |.+.+...+..  .... ..+.|+ +|.      ..+.......
T Consensus         3 v~~~G~~~~GKTsli~~l~~~---~~~---~~~p--t~g~~~~~~~~--~~~~-~~l~D~-~G~------~~~~~~~~~~   64 (159)
T cd04150           3 ILMVGLDAAGKTTILYKLKLG---EIV---TTIP--TIGFNVETVEY--KNIS-FTVWDV-GGQ------DKIRPLWRHY   64 (159)
T ss_pred             EEEECCCCCCHHHHHHHHhcC---CCc---ccCC--CCCcceEEEEE--CCEE-EEEEEC-CCC------HhHHHHHHHH
Confidence            678999999999999999742   111   1111  12222211111  1111 245666 442      2222222222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                         ...+|.+++-.+. .++..+.+.. ++...+... .. ...|.+|+.||+|+.+...    .+++...+. ++. + 
T Consensus        65 ---~~~ad~~i~v~D~-~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~NK~Dl~~~~~----~~~i~~~~~-~~~-~-  131 (159)
T cd04150          65 ---FQNTQGLIFVVDS-NDRERIGEAREELQRMLNED-EL-RDAVLLVFANKQDLPNAMS----AAEVTDKLG-LHS-L-  131 (159)
T ss_pred             ---hcCCCEEEEEEeC-CCHHHHHHHHHHHHHHHhcH-Hh-cCCCEEEEEECCCCCCCCC----HHHHHHHhC-ccc-c-
Confidence               2467888883332 2232222211 011111110 01 1145899999999965421    233333331 110 0 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                           ... . ..++++||++|.|++++.++|.
T Consensus       132 -----~~~-~-~~~~~~Sak~g~gv~~~~~~l~  157 (159)
T cd04150         132 -----RNR-N-WYIQATCATSGDGLYEGLDWLS  157 (159)
T ss_pred             -----CCC-C-EEEEEeeCCCCCCHHHHHHHHh
Confidence                 000 1 1356899999999999998874

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04122 Rab14 Rab14 subfamily

Probab=99.04  E-value=1.4e-09  Score=86.37  Aligned_cols=154  Identities=16%  Similarity=0.129  Sum_probs=75.9

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|.+|+|||||+++++..    +.  ....+.+ .+.+..  .+...+.... ..+.|+ +|.      ..+.....
T Consensus         5 i~iiG~~~vGKTsli~~~~~~----~~--~~~~~~t-~~~~~~~~~~~~~~~~~~-l~i~Dt-~G~------~~~~~~~~   69 (166)
T cd04122           5 YIIIGDMGVGKSCLLHQFTEK----KF--MADCPHT-IGVEFGTRIIEVNGQKIK-LQIWDT-AGQ------ERFRAVTR   69 (166)
T ss_pred             EEEECCCCCCHHHHHHHHhcC----CC--CCCCCcc-cceeEEEEEEEECCEEEE-EEEEEC-CCc------HHHHHHHH
Confidence            678999999999999999853    11  1111111 221111  1111111111 245666 331      22222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...   ...|.+++- .++.++..+.........+... . ....+.++|.||+|+.+....  ..+...+..+..+  .
T Consensus        70 ~~~---~~~~~~ilv-~d~~~~~s~~~~~~~~~~~~~~-~-~~~~~iiiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~  139 (166)
T cd04122          70 SYY---RGAAGALMV-YDITRRSTYNHLSSWLTDARNL-T-NPNTVIFLIGNKADLEAQRDV--TYEEAKQFADENG--L  139 (166)
T ss_pred             HHh---cCCCEEEEE-EECCCHHHHHHHHHHHHHHHHh-C-CCCCeEEEEEECcccccccCc--CHHHHHHHHHHcC--C
Confidence            222   366777662 3345555433221111111111 0 111458899999999765422  1233333332211  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                   ..+.+||++|.|++++...+.
T Consensus       140 -------------~~~e~Sa~~~~~i~e~f~~l~  160 (166)
T cd04122         140 -------------LFLECSAKTGENVEDAFLETA  160 (166)
T ss_pred             -------------EEEEEECCCCCCHHHHHHHHH
Confidence                         467899999999999876654

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PRK13768 GTPase; Provisional

Probab=99.04  E-value=7e-10  Score=94.43  Aligned_cols=38  Identities=21%  Similarity=0.308  Sum_probs=31.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~   70 (263)
                      .+++++|++|+||||+...+...  ..|.++.++..|++.
T Consensus         3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~   42 (253)
T PRK13768          3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAV   42 (253)
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCCcc
Confidence            37889999999999999888653  458899999988874

>cd04127 Rab27A Rab27a subfamily

Probab=99.03  E-value=1.7e-09  Score=86.89  Aligned_cols=165  Identities=17%  Similarity=0.101  Sum_probs=77.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCC-CCeEEEEecCCCc-ccccchhh-hhcCCCC-cceeeeeeecCcceEeecchhHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGE-EIGVERAM-INEGEGG-ALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~-~~~~~ii~~~~g~-t~~~d~~~-~~~~~~~-~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      -++++|.+|+|||||++++....- +.....+..++.. ........ ......+ ..-..++|+ +|.      ..+..
T Consensus         6 ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt-~G~------~~~~~   78 (180)
T cd04127           6 KFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDT-AGQ------ERFRS   78 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeC-CCh------HHHHH
Confidence            367999999999999999985421 1100001111100 00000000 0000000 111246776 331      22222


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      ......   ...|.+++-.+ +.++..+.........+.... .....+.++|.||+|+.+....  ..++.....+..+
T Consensus        79 ~~~~~~---~~~~~~i~v~d-~~~~~s~~~~~~~~~~i~~~~-~~~~~piiiv~nK~Dl~~~~~v--~~~~~~~~~~~~~  151 (180)
T cd04127          79 LTTAFF---RDAMGFLLIFD-LTNEQSFLNVRNWMSQLQTHA-YCENPDIVLCGNKADLEDQRQV--SEEQAKALADKYG  151 (180)
T ss_pred             HHHHHh---CCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc-CCCCCcEEEEEeCccchhcCcc--CHHHHHHHHHHcC
Confidence            222222   36677777333 344444333211111121111 1112458899999999765321  1223333322221


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                        .             +.+.+||++|.|++++..++..
T Consensus       152 --~-------------~~~e~Sak~~~~v~~l~~~l~~  174 (180)
T cd04127         152 --I-------------PYFETSAATGTNVEKAVERLLD  174 (180)
T ss_pred             --C-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence              1             3678999999999999887753

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.03  E-value=3.2e-09  Score=87.46  Aligned_cols=60  Identities=17%  Similarity=0.145  Sum_probs=37.6

Q ss_pred             eeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744          158 TDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                      +.++++||+|+.+..    ......+.+++.....        .....+++++||++|+|+++|.+++.+..
T Consensus       139 ~iiivvNK~Dl~~~~----~~~~~~~~i~~~~~~~--------~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         139 HIIIVQNKIDLVKEE----QALENYEQIKKFVKGT--------IAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             cEEEEEEchhccCHH----HHHHHHHHHHHHHhcc--------ccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            378899999998643    1222223333322110        00123578999999999999999987643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.03  E-value=7.7e-10  Score=104.97  Aligned_cols=162  Identities=16%  Similarity=0.177  Sum_probs=81.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      +|+++|..++|||||+++|++.....  .......|.|+.......... .+.. ..++|+ ||-      +++...   
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr--~~eE~~rGiTI~l~~~~~~~~-~g~~-i~~IDt-PGh------e~fi~~---   67 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADR--LPEEKKRGMTIDLGYAYWPQP-DGRV-LGFIDV-PGH------EKFLSN---   67 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCcc--chhcccCCceEEeeeEEEecC-CCcE-EEEEEC-CCH------HHHHHH---
Confidence            68999999999999999998421000  000111232222211111111 1111 257787 441      233333   


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHH-HHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          114 LVQRKERLDHILLETTGLANPAPLA-SVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~-~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...-...+|.+++-.+.-..+.+.. +.+.   .+ .....   ...+||+||+|+++.+    .++.+.+.++......
T Consensus        68 m~~g~~~~D~~lLVVda~eg~~~qT~ehl~---il-~~lgi---~~iIVVlNKiDlv~~~----~~~~v~~ei~~~l~~~  136 (614)
T PRK10512         68 MLAGVGGIDHALLVVACDDGVMAQTREHLA---IL-QLTGN---PMLTVALTKADRVDEA----RIAEVRRQVKAVLREY  136 (614)
T ss_pred             HHHHhhcCCEEEEEEECCCCCcHHHHHHHH---HH-HHcCC---CeEEEEEECCccCCHH----HHHHHHHHHHHHHHhc
Confidence            2222356888877333211111111 1110   11 11111   1147899999998754    2333344443321100


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                              .+...+++++||++|+|+++|.+.|...
T Consensus       137 --------~~~~~~ii~VSA~tG~gI~~L~~~L~~~  164 (614)
T PRK10512        137 --------GFAEAKLFVTAATEGRGIDALREHLLQL  164 (614)
T ss_pred             --------CCCCCcEEEEeCCCCCCCHHHHHHHHHh
Confidence                    0012368899999999999999998754

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.03  E-value=1.5e-09  Score=87.30  Aligned_cols=54  Identities=24%  Similarity=0.223  Sum_probs=35.1

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ++.++++||+|+......  ..+......+..+               ..++++||++|.|+.++..++..
T Consensus       107 ~p~ilv~NK~Dl~~~~~~--~~~~~~~~~~~~~---------------~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137         107 VPIVLVGNKSDLHTQRQV--STEEGKELAESWG---------------AAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             CCEEEEEEchhhhhcCcc--CHHHHHHHHHHcC---------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence            458999999998754321  1122222222211               14678999999999999888764

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04118 Rab24 Rab24 subfamily

Probab=99.02  E-value=7.3e-10  Score=90.21  Aligned_cols=157  Identities=16%  Similarity=0.221  Sum_probs=75.0

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      |+++|.+|+|||||+++++...    ..  ......|.+.+.  ..+..++... ...++|++ |.      ..+ ..+.
T Consensus         3 i~vvG~~~vGKSsLi~~~~~~~----~~--~~~~~~t~~~~~~~~~~~~~~~~~-~l~i~D~~-G~------~~~-~~~~   67 (193)
T cd04118           3 VVMLGKESVGKTSLVERYVHHR----FL--VGPYQNTIGAAFVAKRMVVGERVV-TLGIWDTA-GS------ERY-EAMS   67 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC----cC--CcCcccceeeEEEEEEEEECCEEE-EEEEEECC-Cc------hhh-hhhh
Confidence            6899999999999999998531    11  000111111111  0111111111 11355663 21      111 1222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCC--cchHHHHHHHHHhhcC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERS--GDSLDELEKEIHEINS  190 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~--~~~~~~~~~~l~~~~p  190 (263)
                      ...  ....|.+++-.+ +.++..+.........+...   ..-.+.++|.||+|+.+....  ....+.+.+.....+ 
T Consensus        68 ~~~--~~~~d~iilv~d-~~~~~s~~~~~~~~~~i~~~---~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-  140 (193)
T cd04118          68 RIY--YRGAKAAIVCYD-LTDSSSFERAKFWVKELQNL---EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-  140 (193)
T ss_pred             Hhh--cCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHhc---CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-
Confidence            221  236777777333 34444332211111111111   112458999999998754210  001122222222111 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                    .+++.+||++|.|++++.+++..
T Consensus       141 --------------~~~~~~Sa~~~~gv~~l~~~i~~  163 (193)
T cd04118         141 --------------AQHFETSSKTGQNVDELFQKVAE  163 (193)
T ss_pred             --------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence                          13678999999999999988764

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04124 RabL2 RabL2 subfamily

Probab=99.02  E-value=5.2e-10  Score=88.47  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=19.0

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|.+|+|||||+++++..
T Consensus         3 i~vvG~~~vGKTsli~~~~~~   23 (161)
T cd04124           3 IILLGDSAVGKSKLVERFLMD   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999999854

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.01  E-value=3.1e-09  Score=90.16  Aligned_cols=160  Identities=19%  Similarity=0.191  Sum_probs=79.7

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccc-cchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIG-VERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~-~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      ++++|.+|+|||||+++++...-.      .....+ +. .....+...+.. +..+++|++ |.      ..+ ..+..
T Consensus         3 VvvlG~~gvGKTSLi~r~~~~~f~------~~y~pT-i~d~~~k~~~i~~~~-~~l~I~Dt~-G~------~~~-~~~~~   66 (247)
T cd04143           3 MVVLGASKVGKTAIVSRFLGGRFE------EQYTPT-IEDFHRKLYSIRGEV-YQLDILDTS-GN------HPF-PAMRR   66 (247)
T ss_pred             EEEECcCCCCHHHHHHHHHcCCCC------CCCCCC-hhHhEEEEEEECCEE-EEEEEEECC-CC------hhh-hHHHH
Confidence            689999999999999999853110      011111 21 111111111111 112456763 21      112 12333


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccc-------eeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESA-------VRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIH  186 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~-------~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~  186 (263)
                      ..  ....|.+++-. .+.++..+.........+...       .....-++.++|.||+|+....+.  ..+++.+.+.
T Consensus        67 ~~--~~~ad~iIlVf-dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v--~~~ei~~~~~  141 (247)
T cd04143          67 LS--ILTGDVFILVF-SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREV--QRDEVEQLVG  141 (247)
T ss_pred             HH--hccCCEEEEEE-eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhcccc--CHHHHHHHHH
Confidence            22  13567777622 234444332221111111110       001112568999999999753221  2344544443


Q ss_pred             hhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744          187 EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       187 ~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                      ..+ .             ..++.+||++|.|++++..++....
T Consensus       142 ~~~-~-------------~~~~evSAktg~gI~elf~~L~~~~  170 (247)
T cd04143         142 GDE-N-------------CAYFEVSAKKNSNLDEMFRALFSLA  170 (247)
T ss_pred             hcC-C-------------CEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            211 1             1468899999999999998887543

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04142 RRP22 RRP22 subfamily

Probab=99.01  E-value=1.4e-09  Score=89.23  Aligned_cols=165  Identities=16%  Similarity=0.070  Sum_probs=76.7

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceE-e-ecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-C-TVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~-~-~~~~~~~~~l~  112 (263)
                      |+|+|.+|+|||||+++++...    ... ...+..+.......+...+. ..-..++|+ +|... . +...+...   
T Consensus         3 I~ivG~~~vGKTsLi~~~~~~~----f~~-~~~pt~~~~~~~~~i~~~~~-~~~l~i~Dt-~G~~~~~~~~~~e~~~---   72 (198)
T cd04142           3 VAVLGAPGVGKTAIVRQFLAQE----FPE-EYIPTEHRRLYRPAVVLSGR-VYDLHILDV-PNMQRYPGTAGQEWMD---   72 (198)
T ss_pred             EEEECCCCCcHHHHHHHHHcCC----CCc-ccCCccccccceeEEEECCE-EEEEEEEeC-CCcccCCccchhHHHH---
Confidence            6899999999999999998531    100 11222111111011111111 111246777 33210 0 11111111   


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee-eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR-LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~-~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ........+|.+++-.+ ..++..+.........+..... ...-+|.++|.||+|+.+....  ..+.+.+..++.. .
T Consensus        73 ~~~~~~~~ad~iilv~D-~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~--~~~~~~~~~~~~~-~  148 (198)
T cd04142          73 PRFRGLRNSRAFILVYD-ICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA--PRHVLSVLVRKSW-K  148 (198)
T ss_pred             HHHhhhccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccc--cHHHHHHHHHHhc-C
Confidence            11111246888888333 3344433222111111111110 0122569999999999664321  1122222111111 1


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                   -+.+.+||++|.|++++...+.
T Consensus       149 -------------~~~~e~Sak~g~~v~~lf~~i~  170 (198)
T cd04142         149 -------------CGYLECSAKYNWHILLLFKELL  170 (198)
T ss_pred             -------------CcEEEecCCCCCCHHHHHHHHH
Confidence                         1468899999999999887665

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.00  E-value=7e-09  Score=86.70  Aligned_cols=70  Identities=14%  Similarity=0.224  Sum_probs=40.8

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe---E--------EE-ee-cCCCChhhhhccccCCcchhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH---V--------IR-SV-RCQVDLSEVLNCRAYDATHVTRLEG  223 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~---i--------~~-~~-~~~~~~~~ii~isa~~g~~~~~l~~  223 (263)
                      ++.++|+||+|+++..+....++.+.+.++.  +.+.   .        +. +. .......+++.+||.+|+|++.|+.
T Consensus       139 ip~ivvvNK~D~~~~~~~~~~~~~l~~~L~~--~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~  216 (224)
T cd04165         139 IPVFVVVTKIDLAPANILQETLKDLKRILKV--PGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHA  216 (224)
T ss_pred             CCEEEEEECccccCHHHHHHHHHHHHHHhcC--CCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHH
Confidence            3478999999998764322233334444431  1111   0        00 00 0111234788899999999999998


Q ss_pred             hhhhh
Q 024744          224 LLEEH  228 (263)
Q Consensus       224 ~l~~~  228 (263)
                      .|...
T Consensus       217 ~L~~l  221 (224)
T cd04165         217 FLNLL  221 (224)
T ss_pred             HHHhc
Confidence            87653

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.00  E-value=1.1e-09  Score=90.68  Aligned_cols=20  Identities=35%  Similarity=0.493  Sum_probs=18.6

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      ++|+|.+|||||||+++|+.
T Consensus         2 i~iiG~~~~GKStL~~~Ll~   21 (208)
T cd04166           2 FLTCGSVDDGKSTLIGRLLY   21 (208)
T ss_pred             EEEEECCCCCHHHHHHHHHH
Confidence            68999999999999999975

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01892 Miro2 Miro2 subfamily

Probab=98.99  E-value=2.1e-09  Score=85.81  Aligned_cols=156  Identities=15%  Similarity=0.068  Sum_probs=75.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      -++++|.+|+|||||+++++..    +..+-... .+ .+.+.  ..+...+.... ..+.++ +|.      ..+ ..+
T Consensus         6 kv~~vG~~~vGKTsli~~~~~~----~f~~~~~~-~T-~~~~~~~~~~~~~~~~~~-l~~~d~-~g~------~~~-~~~   70 (169)
T cd01892           6 LCFVLGAKGSGKSALLRAFLGR----SFSLNAYS-PT-IKPRYAVNTVEVYGQEKY-LILREV-GED------EVA-ILL   70 (169)
T ss_pred             EEEEECCCCCcHHHHHHHHhCC----CCCcccCC-Cc-cCcceEEEEEEECCeEEE-EEEEec-CCc------ccc-ccc
Confidence            4789999999999999999842    22101111 11 21111  11111111111 123344 221      111 111


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCC-cchHHHHHHHHHhhcC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERS-GDSLDELEKEIHEINS  190 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~-~~~~~~~~~~l~~~~p  190 (263)
                      ....  ....|.+++-.+ ..++..+.........+..    ..-+|.++|+||+|+.+..+. ....+++.   +.+  
T Consensus        71 ~~~~--~~~~d~~llv~d-~~~~~s~~~~~~~~~~~~~----~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~---~~~--  138 (169)
T cd01892          71 NDAE--LAACDVACLVYD-SSDPKSFSYCAEVYKKYFM----LGEIPCLFVAAKADLDEQQQRYEVQPDEFC---RKL--  138 (169)
T ss_pred             chhh--hhcCCEEEEEEe-CCCHHHHHHHHHHHHHhcc----CCCCeEEEEEEcccccccccccccCHHHHH---HHc--
Confidence            1111  146788877433 3444443322111111111    112569999999998654310 00112221   111  


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                                  +....+.+||.+|.|++++...+...
T Consensus       139 ------------~~~~~~~~Sa~~~~~v~~lf~~l~~~  164 (169)
T cd01892         139 ------------GLPPPLHFSSKLGDSSNELFTKLATA  164 (169)
T ss_pred             ------------CCCCCEEEEeccCccHHHHHHHHHHH
Confidence                        12235789999999999998877654

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=98.99  E-value=1.5e-09  Score=87.18  Aligned_cols=158  Identities=13%  Similarity=0.080  Sum_probs=79.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-++++|.+|+|||||++++...   . .  ....+  |.+.+...+..  .... ..+.|+ +|.      ..+.....
T Consensus        14 ~ki~l~G~~~~GKTsL~~~~~~~---~-~--~~~~~--t~~~~~~~~~~--~~~~-l~l~D~-~G~------~~~~~~~~   75 (175)
T smart00177       14 MRILMVGLDAAGKTTILYKLKLG---E-S--VTTIP--TIGFNVETVTY--KNIS-FTVWDV-GGQ------DKIRPLWR   75 (175)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhcC---C-C--CCcCC--ccccceEEEEE--CCEE-EEEEEC-CCC------hhhHHHHH
Confidence            35789999999999999999742   1 1  11111  13322211111  1111 246777 342      22222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ...   ..+|.+++-.+ +.++..+.+.. ++...+... ... -.+.+||.||+|+.+...    .+++...+...  .
T Consensus        76 ~~~---~~ad~ii~v~D-~t~~~s~~~~~~~l~~~~~~~-~~~-~~piilv~NK~Dl~~~~~----~~~i~~~~~~~--~  143 (175)
T smart00177       76 HYY---TNTQGLIFVVD-SNDRDRIDEAREELHRMLNED-ELR-DAVILVFANKQDLPDAMK----AAEITEKLGLH--S  143 (175)
T ss_pred             HHh---CCCCEEEEEEE-CCCHHHHHHHHHHHHHHhhCH-hhc-CCcEEEEEeCcCcccCCC----HHHHHHHhCcc--c
Confidence            222   46788877333 34444333221 111111111 011 145899999999875421    23333333210  0


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      +      ...  .-.++++||++|.|+.++.+||...
T Consensus       144 ~------~~~--~~~~~~~Sa~~g~gv~e~~~~l~~~  172 (175)
T smart00177      144 I------RDR--NWYIQPTCATSGDGLYEGLTWLSNN  172 (175)
T ss_pred             c------CCC--cEEEEEeeCCCCCCHHHHHHHHHHH
Confidence            0      000  1135579999999999999998654

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04144 Ras2 Ras2 subfamily

Probab=98.99  E-value=3.1e-09  Score=86.44  Aligned_cols=157  Identities=15%  Similarity=0.114  Sum_probs=75.0

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      ++++|.+|+|||||+++++...    +.  .....+ .+... ..+...+ ......++|+ +|.      ..+......
T Consensus         2 i~ivG~~~vGKTsli~~l~~~~----f~--~~~~~t-~~~~~~~~~~~~~-~~~~l~i~Dt-~G~------~~~~~~~~~   66 (190)
T cd04144           2 LVVLGDGGVGKTALTIQLCLNH----FV--ETYDPT-IEDSYRKQVVVDG-QPCMLEVLDT-AGQ------EEYTALRDQ   66 (190)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC----CC--ccCCCc-hHhhEEEEEEECC-EEEEEEEEEC-CCc------hhhHHHHHH
Confidence            6799999999999999998431    10  111111 11110 0001111 1111246777 331      122222222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee-eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR-LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~-~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..   ...|.+++-.+ +.++..+.........+..... ...-.|.++|.||+|+.+....  ......+..+..+  +
T Consensus        67 ~~---~~ad~~ilv~d-~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~~~~~~--~  138 (190)
T cd04144          67 WI---REGEGFILVYS-ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREV--STEEGAALARRLG--C  138 (190)
T ss_pred             HH---HhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCcc--CHHHHHHHHHHhC--C
Confidence            22   35666666333 3444433221111111111100 0112458899999999754321  1122222222221  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   ..+.+||++|.|++++..++..
T Consensus       139 -------------~~~e~SAk~~~~v~~l~~~l~~  160 (190)
T cd04144         139 -------------EFIEASAKTNVNVERAFYTLVR  160 (190)
T ss_pred             -------------EEEEecCCCCCCHHHHHHHHHH
Confidence                         3578999999999999888764

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04176 Rap2 Rap2 subgroup

Probab=98.98  E-value=2.1e-09  Score=84.83  Aligned_cols=156  Identities=20%  Similarity=0.160  Sum_probs=74.0

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccc-cchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIG-VERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~-~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      ++++|.+|+|||||+++++.....      .....+ .. .....+...+... ...+.|+ +|.      +.+......
T Consensus         4 i~i~G~~~vGKTsl~~~~~~~~~~------~~~~~t-~~~~~~~~~~~~~~~~-~l~i~Dt-~G~------~~~~~~~~~   68 (163)
T cd04176           4 VVVLGSGGVGKSALTVQFVSGTFI------EKYDPT-IEDFYRKEIEVDSSPS-VLEILDT-AGT------EQFASMRDL   68 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCC------CCCCCc-hhheEEEEEEECCEEE-EEEEEEC-CCc------ccccchHHH
Confidence            689999999999999999853110      000111 11 0000011111011 1235666 331      122222222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ..   ...|.+++-. .+.++..+.+.......+...... .-+|.++|.||+|+.+....  ..+......+..  .  
T Consensus        69 ~~---~~ad~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~-~~~piviv~nK~Dl~~~~~~--~~~~~~~~~~~~--~--  137 (163)
T cd04176          69 YI---KNGQGFIVVY-SLVNQQTFQDIKPMRDQIVRVKGY-EKVPIILVGNKVDLESEREV--SSAEGRALAEEW--G--  137 (163)
T ss_pred             HH---hhCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcCcc--CHHHHHHHHHHh--C--
Confidence            22   2456666522 345555443322111112111110 12558999999998754321  111211111111  1  


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                 .+++++||++|.|++++..++..
T Consensus       138 -----------~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04176         138 -----------CPFMETSAKSKTMVNELFAEIVR  160 (163)
T ss_pred             -----------CEEEEecCCCCCCHHHHHHHHHH
Confidence                       13678999999999999887653

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PTZ00369 Ras-like protein; Provisional

Probab=98.98  E-value=3.6e-09  Score=86.05  Aligned_cols=157  Identities=15%  Similarity=0.098  Sum_probs=75.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      -++++|.+|+|||||+++++......     ... .+ .+... ..+...+ .....+++|+ +|.      .++.....
T Consensus         7 Ki~iiG~~~~GKTsLi~~~~~~~~~~-----~~~-~t-~~~~~~~~~~~~~-~~~~l~i~Dt-~G~------~~~~~l~~   71 (189)
T PTZ00369          7 KLVVVGGGGVGKSALTIQFIQNHFID-----EYD-PT-IEDSYRKQCVIDE-ETCLLDILDT-AGQ------EEYSAMRD   71 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCc-----CcC-Cc-hhhEEEEEEEECC-EEEEEEEEeC-CCC------ccchhhHH
Confidence            46799999999999999998532100     000 11 11100 0000111 1111245677 332      22222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...   ...|.+++-. .+.++..+.........+..... ..-+|.++|.||+|+.+....  ..+...+..+..+   
T Consensus        72 ~~~---~~~d~iilv~-D~s~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~i--~~~~~~~~~~~~~---  141 (189)
T PTZ00369         72 QYM---RTGQGFLCVY-SITSRSSFEEIASFREQILRVKD-KDRVPMILVGNKCDLDSERQV--STGEGQELAKSFG---  141 (189)
T ss_pred             HHh---hcCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccc--CHHHHHHHHHHhC---
Confidence            222   3566666622 23444432221111111111111 112458999999998654321  1122222222211   


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  .+++.+||++|.|++++..++..
T Consensus       142 ------------~~~~e~Sak~~~gi~~~~~~l~~  164 (189)
T PTZ00369        142 ------------IPFLETSAKQRVNVDEAFYELVR  164 (189)
T ss_pred             ------------CEEEEeeCCCCCCHHHHHHHHHH
Confidence                        13678999999999998888764

>PLN00223 ADP-ribosylation factor; Provisional

Probab=98.98  E-value=1.6e-09  Score=87.58  Aligned_cols=156  Identities=13%  Similarity=0.102  Sum_probs=79.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++++|.+|||||||++++....    .  ....+  |.+.+...+...  .. ...+.|+ +|.      ..+......
T Consensus        19 ki~ivG~~~~GKTsl~~~l~~~~----~--~~~~p--t~g~~~~~~~~~--~~-~~~i~D~-~Gq------~~~~~~~~~   80 (181)
T PLN00223         19 RILMVGLDAAGKTTILYKLKLGE----I--VTTIP--TIGFNVETVEYK--NI-SFTVWDV-GGQ------DKIRPLWRH   80 (181)
T ss_pred             EEEEECCCCCCHHHHHHHHccCC----C--ccccC--CcceeEEEEEEC--CE-EEEEEEC-CCC------HHHHHHHHH
Confidence            47899999999999999997421    1  11111  122222112111  11 1246676 332      222222222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..   ..+|.+++-.+ ..++..+.+.. .+...+... .. ...+.+|+.||+|+.+..    ..+++.+.+.-.+...
T Consensus        81 ~~---~~a~~iI~V~D-~s~~~s~~~~~~~l~~~l~~~-~~-~~~piilv~NK~Dl~~~~----~~~~~~~~l~l~~~~~  150 (181)
T PLN00223         81 YF---QNTQGLIFVVD-SNDRDRVVEARDELHRMLNED-EL-RDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRQ  150 (181)
T ss_pred             Hh---ccCCEEEEEEe-CCcHHHHHHHHHHHHHHhcCH-hh-CCCCEEEEEECCCCCCCC----CHHHHHHHhCccccCC
Confidence            22   46788777333 34444332211 111111110 11 124589999999987654    2345555442111000


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                ..-.++++||++|+|+.++..||..
T Consensus       151 ----------~~~~~~~~Sa~~g~gv~e~~~~l~~  175 (181)
T PLN00223        151 ----------RHWYIQSTCATSGEGLYEGLDWLSN  175 (181)
T ss_pred             ----------CceEEEeccCCCCCCHHHHHHHHHH
Confidence                      0002457899999999999998864

>cd04125 RabA_like RabA-like subfamily

Probab=98.97  E-value=3.4e-09  Score=85.95  Aligned_cols=155  Identities=17%  Similarity=0.191  Sum_probs=75.0

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|.+|+|||||+++++..    +... ...+  |.+.+.  ..+...+.. ....++++ +|.      ........
T Consensus         3 i~v~G~~~vGKSsli~~~~~~----~~~~-~~~~--t~~~~~~~~~~~~~~~~-~~~~i~Dt-~g~------~~~~~~~~   67 (188)
T cd04125           3 VVIIGDYGVGKSSLLKRFTED----EFSE-STKS--TIGVDFKIKTVYIENKI-IKLQIWDT-NGQ------ERFRSLNN   67 (188)
T ss_pred             EEEECCCCCCHHHHHHHHhcC----CCCC-CCCC--ceeeEEEEEEEEECCEE-EEEEEEEC-CCc------HHHHhhHH
Confidence            689999999999999999843    2210 0010  111111  111111111 11245666 331      12222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..   ....|.+++-.+ +.++..+..+......+.....  .-.+.++|.||+|+.+....  ..+......+..    
T Consensus        68 ~~---~~~~d~iilv~d-~~~~~s~~~i~~~~~~i~~~~~--~~~~~ivv~nK~Dl~~~~~v--~~~~~~~~~~~~----  135 (188)
T cd04125          68 SY---YRGAHGYLLVYD-VTDQESFENLKFWINEINRYAR--ENVIKVIVANKSDLVNNKVV--DSNIAKSFCDSL----  135 (188)
T ss_pred             HH---ccCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhCC--CCCeEEEEEECCCCcccccC--CHHHHHHHHHHc----
Confidence            22   246788777332 3444443322111111111111  11457899999998754321  112222222211    


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                .. +.+.+||++|.|++++..++..
T Consensus       136 ----------~~-~~~evSa~~~~~i~~~f~~l~~  159 (188)
T cd04125         136 ----------NI-PFFETSAKQSINVEEAFILLVK  159 (188)
T ss_pred             ----------CC-eEEEEeCCCCCCHHHHHHHHHH
Confidence                      11 4678999999999988877653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01890 LepA LepA subfamily

Probab=98.97  E-value=1.1e-08  Score=81.90  Aligned_cols=56  Identities=23%  Similarity=0.329  Sum_probs=36.1

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      ++.++|+||+|+.+..     .....+.+.+... .          ...+++.+||++|.|++++.+++...
T Consensus       120 ~~iiiv~NK~Dl~~~~-----~~~~~~~~~~~~~-~----------~~~~~~~~Sa~~g~gi~~l~~~l~~~  175 (179)
T cd01890         120 LEIIPVINKIDLPSAD-----PERVKQQIEDVLG-L----------DPSEAILVSAKTGLGVEDLLEAIVER  175 (179)
T ss_pred             CCEEEEEECCCCCcCC-----HHHHHHHHHHHhC-C----------CcccEEEeeccCCCCHHHHHHHHHhh
Confidence            3488999999986532     1222233332211 0          12347899999999999999887653

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=98.96  E-value=1.7e-09  Score=87.52  Aligned_cols=156  Identities=15%  Similarity=0.146  Sum_probs=76.5

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|+|||||++++...   ...   ...+  |.+.+...+..  .... ..++|+ +|.      ..+.......
T Consensus        20 v~lvG~~~vGKTsli~~~~~~---~~~---~~~~--T~~~~~~~~~~--~~~~-~~l~D~-~G~------~~~~~~~~~~   81 (182)
T PTZ00133         20 ILMVGLDAAGKTTILYKLKLG---EVV---TTIP--TIGFNVETVEY--KNLK-FTMWDV-GGQ------DKLRPLWRHY   81 (182)
T ss_pred             EEEEcCCCCCHHHHHHHHhcC---Ccc---ccCC--ccccceEEEEE--CCEE-EEEEEC-CCC------HhHHHHHHHH
Confidence            779999999999999999742   111   1111  12222111111  1111 246676 442      1222222222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      .   ..+|.+++-.+ ..++..+.+.. .+...+... ... -.+.+||.||.|+.+...    .+.+...+..  ..++
T Consensus        82 ~---~~ad~iI~v~D-~t~~~s~~~~~~~l~~~~~~~-~~~-~~piilv~NK~Dl~~~~~----~~~i~~~l~~--~~~~  149 (182)
T PTZ00133         82 Y---QNTNGLIFVVD-SNDRERIGDAREELERMLSED-ELR-DAVLLVFANKQDLPNAMS----TTEVTEKLGL--HSVR  149 (182)
T ss_pred             h---cCCCEEEEEEe-CCCHHHHHHHHHHHHHHHhCH-hhc-CCCEEEEEeCCCCCCCCC----HHHHHHHhCC--Cccc
Confidence            2   46788777433 33443332211 011111110 011 145889999999865431    2333333321  0110


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                            .. . -.++.+||++|.|++++.+++...
T Consensus       150 ------~~-~-~~~~~~Sa~tg~gv~e~~~~l~~~  176 (182)
T PTZ00133        150 ------QR-N-WYIQGCCATTAQGLYEGLDWLSAN  176 (182)
T ss_pred             ------CC-c-EEEEeeeCCCCCCHHHHHHHHHHH
Confidence                  00 0 024578999999999999998653

>cd04140 ARHI_like ARHI subfamily

Probab=98.96  E-value=3.1e-09  Score=84.27  Aligned_cols=54  Identities=20%  Similarity=0.073  Sum_probs=33.9

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +|.++|.||+|+.+..+.  ..+......+..  .             ...+.+||++|.|++++..++..
T Consensus       109 ~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~--~-------------~~~~e~SA~~g~~v~~~f~~l~~  162 (165)
T cd04140         109 IPIMLVGNKCDESHKREV--SSNEGAACATEW--N-------------CAFMETSAKTNHNVQELFQELLN  162 (165)
T ss_pred             CCEEEEEECccccccCee--cHHHHHHHHHHh--C-------------CcEEEeecCCCCCHHHHHHHHHh
Confidence            568999999999764321  111111111111  1             14678999999999999888753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04120 Rab12 Rab12 subfamily

Probab=98.96  E-value=5.4e-09  Score=86.02  Aligned_cols=156  Identities=15%  Similarity=0.127  Sum_probs=76.9

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      |+++|..|+|||||++++....-       ..+...|.+.+..  .+..++... -..+.|++ |.      +.+. .+.
T Consensus         3 vvvlG~~gVGKTSli~r~~~~~f-------~~~~~~Ti~~~~~~~~i~~~~~~v-~l~iwDta-Gq------e~~~-~l~   66 (202)
T cd04120           3 VIIIGSRGVGKTSLMRRFTDDTF-------CEACKSGVGVDFKIKTVELRGKKI-RLQIWDTA-GQ------ERFN-SIT   66 (202)
T ss_pred             EEEECcCCCCHHHHHHHHHhCCC-------CCcCCCcceeEEEEEEEEECCEEE-EEEEEeCC-Cc------hhhH-HHH
Confidence            67999999999999999985311       0111111221111  111111111 12456663 31      2222 222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...  ....|.+++ +.++.++..+.........+... . ..-++.++|.||+|+.+..+.  ..+...+..++. .. 
T Consensus        67 ~~y--~~~ad~iIl-VfDvtd~~Sf~~l~~w~~~i~~~-~-~~~~piilVgNK~DL~~~~~v--~~~~~~~~a~~~-~~-  137 (202)
T cd04120          67 SAY--YRSAKGIIL-VYDITKKETFDDLPKWMKMIDKY-A-SEDAELLLVGNKLDCETDREI--SRQQGEKFAQQI-TG-  137 (202)
T ss_pred             HHH--hcCCCEEEE-EEECcCHHHHHHHHHHHHHHHHh-C-CCCCcEEEEEECccccccccc--CHHHHHHHHHhc-CC-
Confidence            222  136777777 33355555543321111112211 1 112558999999999754322  112222211111 11 


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  -..+.+||++|.|++++..++..
T Consensus       138 ------------~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120         138 ------------MRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ------------CEEEEecCCCCCCHHHHHHHHHH
Confidence                        13678999999999998877653

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.95  E-value=7.8e-10  Score=88.05  Aligned_cols=153  Identities=18%  Similarity=0.139  Sum_probs=74.3

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhh--hhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAM--INEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~--~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|.+|||||||+++++......+       ...|.+.+...  +.... ......+.|+ +|.      +.+ ..+.
T Consensus         3 i~vvG~~~vGKTsli~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt-~G~------~~~-~~~~   66 (166)
T cd00877           3 LVLVGDGGTGKTTFVKRHLTGEFEKK-------YVATLGVEVHPLDFHTNR-GKIRFNVWDT-AGQ------EKF-GGLR   66 (166)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCC-------CCCceeeEEEEEEEEECC-EEEEEEEEEC-CCC------hhh-cccc
Confidence            68999999999999999985321100       00112111111  11111 1111245666 332      111 1121


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...  ....|.+++-.+ +.++..+.........+.....   -+|.++|.||+|+.+....    .+.. .+...+   
T Consensus        67 ~~~--~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~~~~----~~~~-~~~~~~---  132 (166)
T cd00877          67 DGY--YIGGQCAIIMFD-VTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDRKVK----AKQI-TFHRKK---  132 (166)
T ss_pred             HHH--hcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccccCC----HHHH-HHHHHc---
Confidence            111  135677666333 3444443222111111211111   2558999999999744311    1111 111111   


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                                 ..+.+.+||++|.|++++.+++...
T Consensus       133 -----------~~~~~e~Sa~~~~~v~~~f~~l~~~  157 (166)
T cd00877         133 -----------NLQYYEISAKSNYNFEKPFLWLARK  157 (166)
T ss_pred             -----------CCEEEEEeCCCCCChHHHHHHHHHH
Confidence                       1246889999999999999888643

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04148 RGK RGK subfamily

Probab=98.95  E-value=5.4e-09  Score=87.25  Aligned_cols=156  Identities=15%  Similarity=0.074  Sum_probs=74.6

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      |+++|.+|+|||||+++++...    ..  ......+...+.  ..+........ ..++|+ +|.-         ..+.
T Consensus         3 I~lvG~~gvGKTsLi~~~~~~~----~~--~~~~~~t~~~~~~~~~i~~~~~~~~-l~i~Dt-~G~~---------~~~~   65 (221)
T cd04148           3 VVMLGSPGVGKSSLASQFTSGE----YD--DHAYDASGDDDTYERTVSVDGEEST-LVVIDH-WEQE---------MWTE   65 (221)
T ss_pred             EEEECCCCCcHHHHHHHHhcCC----cC--ccCcCCCccccceEEEEEECCEEEE-EEEEeC-CCcc---------hHHH
Confidence            6899999999999999997421    11  011111011010  00111011111 235666 3321         1222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..... ...|.+++-. .+.++..+.........+... ....-+|.++|.||+|+.+....  ..+...+ +...+. +
T Consensus        66 ~~~~~-~~ad~iilV~-d~td~~S~~~~~~~~~~l~~~-~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~-~a~~~~-~  138 (221)
T cd04148          66 DSCMQ-YQGDAFVVVY-SVTDRSSFERASELRIQLRRN-RQLEDRPIILVGNKSDLARSREV--SVQEGRA-CAVVFD-C  138 (221)
T ss_pred             hHHhh-cCCCEEEEEE-ECCCHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhcccccee--cHHHHHH-HHHHcC-C
Confidence            22211 1678877733 234444332211111111111 00112558999999999765421  1122222 211111 1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   ..+.+||.+|.|++++.+++..
T Consensus       139 -------------~~~e~SA~~~~gv~~l~~~l~~  160 (221)
T cd04148         139 -------------KFIETSAGLQHNVDELLEGIVR  160 (221)
T ss_pred             -------------eEEEecCCCCCCHHHHHHHHHH
Confidence                         3578999999999999988764

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.95  E-value=7.2e-09  Score=84.80  Aligned_cols=22  Identities=27%  Similarity=0.250  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -++++|.+|+|||||+++|+..
T Consensus         4 ni~iiGh~~~GKTTL~~~Ll~~   25 (195)
T cd01884           4 NVGTIGHVDHGKTTLTAAITKV   25 (195)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=98.94  E-value=4e-10  Score=84.24  Aligned_cols=87  Identities=20%  Similarity=0.200  Sum_probs=50.3

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      |+|+|++|||||||+|+|+    +.+.+.+.+.+++|...........  ...+ .++|+ ||..-........+.+...
T Consensus         2 V~iiG~~~~GKSTlin~l~----~~~~~~~~~~~~~T~~~~~~~~~~~--~~~~-~~vDt-pG~~~~~~~~~~~~~~~~~   73 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALT----GKKLAKVSNIPGTTRDPVYGQFEYN--NKKF-ILVDT-PGINDGESQDNDGKEIRKF   73 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHH----TSTSSEESSSTTSSSSEEEEEEEET--TEEE-EEEES-SSCSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh----ccccccccccccceeeeeeeeeeec--eeeE-EEEeC-CCCcccchhhHHHHHHHHH
Confidence            6899999999999999999    5445567777777555432222211  1222 47888 5532111111111234344


Q ss_pred             HHhccCCcEEEEccc
Q 024744          115 VQRKERLDHILLETT  129 (263)
Q Consensus       115 ~~~~~~~d~ilie~~  129 (263)
                      .......|++++-..
T Consensus        74 ~~~~~~~d~ii~vv~   88 (116)
T PF01926_consen   74 LEQISKSDLIIYVVD   88 (116)
T ss_dssp             HHHHCTESEEEEEEE
T ss_pred             HHHHHHCCEEEEEEE
Confidence            444467888888444

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=98.94  E-value=7.2e-09  Score=98.01  Aligned_cols=157  Identities=15%  Similarity=0.198  Sum_probs=79.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEE--ecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVI--LNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii--~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      +|+++|.+|+|||||+++|++.    .....  ....|.|++.....+...+  . ...++|+ +|.      +.+..  
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~----~~d~~~eE~~rGiTid~~~~~~~~~~--~-~v~~iDt-PGh------e~f~~--   65 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGI----AADRLPEEKKRGMTIDLGFAYFPLPD--Y-RLGFIDV-PGH------EKFIS--   65 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCc----cCcCChhHhcCCceEEeEEEEEEeCC--E-EEEEEEC-CCH------HHHHH--
Confidence            5889999999999999999842    11000  0112222222111121111  1 1257787 442      23332  


Q ss_pred             HHHHHhccCCcEEEEcccCCCC--chhHHHHhhcccccccceeeCeEEe-eEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744          112 EQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIIT-DVVILNKVDLVSPERSGDSLDELEKEIHEI  188 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~--p~~~~~~~~~~~~l~~~~~~~~~i~-~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~  188 (263)
                       ....-...+|.+++-.+....  +........    + ....    ++ .+||+||+|+++.+    ..+.+.+.++.+
T Consensus        66 -~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~i----l-~~lg----i~~iIVVlNK~Dlv~~~----~~~~~~~ei~~~  131 (581)
T TIGR00475        66 -NAIAGGGGIDAALLVVDADEGVMTQTGEHLAV----L-DLLG----IPHTIVVITKADRVNEE----EIKRTEMFMKQI  131 (581)
T ss_pred             -HHHhhhccCCEEEEEEECCCCCcHHHHHHHHH----H-HHcC----CCeEEEEEECCCCCCHH----HHHHHHHHHHHH
Confidence             222223568888873332221  111111111    1 1111    23 88999999998754    223333333322


Q ss_pred             cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ....       +.....+++++||++|+|++++...+..
T Consensus       132 l~~~-------~~~~~~~ii~vSA~tG~GI~eL~~~L~~  163 (581)
T TIGR00475       132 LNSY-------IFLKNAKIFKTSAKTGQGIGELKKELKN  163 (581)
T ss_pred             HHHh-------CCCCCCcEEEEeCCCCCCchhHHHHHHH
Confidence            1100       0001236889999999999998877754

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=98.94  E-value=4e-09  Score=84.32  Aligned_cols=158  Identities=20%  Similarity=0.203  Sum_probs=75.3

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|.+|+|||||+++++...-..       +...|.+.+..  .+...+... -.++.|+ +|.      +.+. .+.
T Consensus         3 i~ivG~~~vGKTsli~~~~~~~f~~-------~~~~t~~~~~~~~~~~~~~~~~-~l~i~Dt-~G~------~~~~-~~~   66 (170)
T cd04108           3 VIVVGDLSVGKTCLINRFCKDVFDK-------NYKATIGVDFEMERFEILGVPF-SLQLWDT-AGQ------ERFK-CIA   66 (170)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCCC-------CCCCceeeEEEEEEEEECCEEE-EEEEEeC-CCh------HHHH-hhH
Confidence            6799999999999999999642110       11111221111  011111111 1246676 332      2222 222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ...  ....|.+++-.+ +.++..+.... ++.......  .+...+.++|.||+|+.+........+...+..++++  
T Consensus        67 ~~~--~~~ad~~ilv~d-~~~~~s~~~~~~~~~~~~~~~--~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~--  139 (170)
T cd04108          67 STY--YRGAQAIIIVFD-LTDVASLEHTRQWLEDALKEN--DPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ--  139 (170)
T ss_pred             HHH--hcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcC--
Confidence            221  246788777333 23333322111 111111111  1112347899999998654321000111112212111  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      +             +.+.+||++|.|++++...+...
T Consensus       140 ~-------------~~~e~Sa~~g~~v~~lf~~l~~~  163 (170)
T cd04108         140 A-------------EYWSVSALSGENVREFFFRVAAL  163 (170)
T ss_pred             C-------------eEEEEECCCCCCHHHHHHHHHHH
Confidence            1             35678999999999998777543

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04147 Ras_dva Ras-dva subfamily

Probab=98.93  E-value=6.6e-09  Score=85.13  Aligned_cols=159  Identities=19%  Similarity=0.215  Sum_probs=76.1

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|+|||||+++++......      ....+........+...+... -..++|+ +|-      ..+ ..+...
T Consensus         2 v~vvG~~~vGKTsll~~~~~~~~~~------~~~~t~~~~~~~~~~~~~~~~-~l~i~D~-~G~------~~~-~~~~~~   66 (198)
T cd04147           2 LVFMGAAGVGKTALIQRFLYDTFEP------KYRRTVEEMHRKEYEVGGVSL-TLDILDT-SGS------YSF-PAMRKL   66 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCc------cCCCchhhheeEEEEECCEEE-EEEEEEC-CCc------hhh-hHHHHH
Confidence            6899999999999999998532111      000110011000011111001 1245666 331      111 122222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  194 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i  194 (263)
                      .  ....|.+++-.+ +.++..+.........+..... ...+|.++|+||+|+.+.... ...+...+... ....   
T Consensus        67 ~--~~~ad~vilv~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~~-v~~~~~~~~~~-~~~~---  137 (198)
T cd04147          67 S--IQNSDAFALVYA-VDDPESFEEVERLREEILEVKE-DKFVPIVVVGNKADSLEEERQ-VPAKDALSTVE-LDWN---  137 (198)
T ss_pred             H--hhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEcccccccccc-ccHHHHHHHHH-hhcC---
Confidence            2  246788777333 4455444322111111111111 112568999999999764211 01111111111 1111   


Q ss_pred             EEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                ..++.+||++|.|++++..++..
T Consensus       138 ----------~~~~~~Sa~~g~gv~~l~~~l~~  160 (198)
T cd04147         138 ----------CGFVETSAKDNENVLEVFKELLR  160 (198)
T ss_pred             ----------CcEEEecCCCCCCHHHHHHHHHH
Confidence                      24678999999999999988764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PRK09866 hypothetical protein; Provisional

Probab=98.93  E-value=4.3e-09  Score=98.08  Aligned_cols=63  Identities=14%  Similarity=0.083  Sum_probs=44.1

Q ss_pred             eeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhcc
Q 024744          158 TDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQY  230 (263)
Q Consensus       158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~  230 (263)
                      +.++|+||+|+.+.+.  ...+.+.+.++.....        ..+++.+++++||++|.|+++|.+.+..+..
T Consensus       291 PVILVVNKIDl~dree--ddkE~Lle~V~~~L~q--------~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~  353 (741)
T PRK09866        291 PLYVLVNKFDQQDRNS--DDADQVRALISGTLMK--------GCITPQQIFPVSSMWGYLANRARHELANNGK  353 (741)
T ss_pred             CEEEEEEcccCCCccc--chHHHHHHHHHHHHHh--------cCCCCceEEEEeCCCCCCHHHHHHHHHhCCC
Confidence            5889999999975432  1245555655432110        1225778999999999999999999887554

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.93  E-value=6.1e-09  Score=87.64  Aligned_cols=22  Identities=36%  Similarity=0.546  Sum_probs=19.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++++|++|+|||||+|+|++.
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~   23 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNT   23 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3689999999999999999943

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04111 Rab39 Rab39 subfamily

Probab=98.93  E-value=6.3e-09  Score=86.22  Aligned_cols=157  Identities=18%  Similarity=0.212  Sum_probs=76.1

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|.+|+|||||+++++...    .... .++  |.+.+..  .+........-..+.|+ +|.      ..+.....
T Consensus         5 IvvvG~~~vGKTsLi~~l~~~~----~~~~-~~~--ti~~d~~~~~i~~~~~~~~~l~i~Dt-~G~------~~~~~~~~   70 (211)
T cd04111           5 LIVIGDSTVGKSSLLKRFTEGR----FAEV-SDP--TVGVDFFSRLIEIEPGVRIKLQLWDT-AGQ------ERFRSITR   70 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHcCC----CCCC-CCc--eeceEEEEEEEEECCCCEEEEEEEeC-Ccc------hhHHHHHH
Confidence            6899999999999999998532    1100 111  1222211  11110001111245666 331      11211111


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...   ...|.+++ +-++.++..+..+......+..... ....+.+||.||+|+.+....  ..+...+..+..+  .
T Consensus        71 ~~~---~~~d~iil-v~D~~~~~Sf~~l~~~~~~i~~~~~-~~~~~iilvgNK~Dl~~~~~v--~~~~~~~~~~~~~--~  141 (211)
T cd04111          71 SYY---RNSVGVLL-VFDITNRESFEHVHDWLEEARSHIQ-PHRPVFILVGHKCDLESQRQV--TREEAEKLAKDLG--M  141 (211)
T ss_pred             HHh---cCCcEEEE-EEECCCHHHHHHHHHHHHHHHHhcC-CCCCeEEEEEEcccccccccc--CHHHHHHHHHHhC--C
Confidence            221   35677666 2234555443332111111111111 111346788999999764321  1222222222221  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   ..+.+||++|.|++++..++..
T Consensus       142 -------------~~~e~Sak~g~~v~e~f~~l~~  163 (211)
T cd04111         142 -------------KYIETSARTGDNVEEAFELLTQ  163 (211)
T ss_pred             -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence                         3577899999999999888764

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04117 Rab15 Rab15 subfamily

Probab=98.92  E-value=1e-08  Score=81.05  Aligned_cols=154  Identities=16%  Similarity=0.153  Sum_probs=74.7

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|.+|+|||||+++++..    +.   ......|.+.+..  .+...+... -..+.+++ |.      ..+.....
T Consensus         3 i~vvG~~~~GKTsli~~~~~~----~~---~~~~~~t~~~~~~~~~~~~~~~~~-~l~i~D~~-g~------~~~~~~~~   67 (161)
T cd04117           3 LLLIGDSGVGKTCLLCRFTDN----EF---HSSHISTIGVDFKMKTIEVDGIKV-RIQIWDTA-GQ------ERYQTITK   67 (161)
T ss_pred             EEEECcCCCCHHHHHHHHhcC----CC---CCCCCCceeeEEEEEEEEECCEEE-EEEEEeCC-Cc------HhHHhhHH
Confidence            689999999999999999843    11   1111111222211  111111011 11355652 21      12222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...   ..+|.+++- .++.++..+.........+...  ...-++.++|.||.|+.+.....  .++.....+..+  .
T Consensus        68 ~~~---~~~~~~i~v-~d~~~~~sf~~~~~~~~~~~~~--~~~~~~iilvgnK~Dl~~~~~v~--~~~~~~~~~~~~--~  137 (161)
T cd04117          68 QYY---RRAQGIFLV-YDISSERSYQHIMKWVSDVDEY--APEGVQKILIGNKADEEQKRQVG--DEQGNKLAKEYG--M  137 (161)
T ss_pred             HHh---cCCcEEEEE-EECCCHHHHHHHHHHHHHHHHh--CCCCCeEEEEEECcccccccCCC--HHHHHHHHHHcC--C
Confidence            221   356777662 2344444433221101111111  11125588999999997654221  122222222221  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                   +.+.+||++|.|++++..+|.
T Consensus       138 -------------~~~e~Sa~~~~~v~~~f~~l~  158 (161)
T cd04117         138 -------------DFFETSACTNSNIKESFTRLT  158 (161)
T ss_pred             -------------EEEEEeCCCCCCHHHHHHHHH
Confidence                         357899999999999988764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04116 Rab9 Rab9 subfamily

Probab=98.92  E-value=5.8e-09  Score=82.97  Aligned_cols=53  Identities=25%  Similarity=0.080  Sum_probs=35.5

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +|.++|.||+|+.+...   ..+++++..+..+              ...++.+||++|.|+.++...+.
T Consensus       115 ~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--------------~~~~~e~Sa~~~~~v~~~~~~~~  167 (170)
T cd04116         115 FPFVVLGNKNDIPERQV---STEEAQAWCRENG--------------DYPYFETSAKDATNVAAAFEEAV  167 (170)
T ss_pred             CcEEEEEECcccccccc---CHHHHHHHHHHCC--------------CCeEEEEECCCCCCHHHHHHHHH
Confidence            56899999999874321   2344444444332              12467899999999998887654

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=98.92  E-value=3.7e-09  Score=84.24  Aligned_cols=157  Identities=15%  Similarity=0.145  Sum_probs=75.8

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|||||||++++.....    .-..+    |.+.....+...  ... ..++|+ +|.      ..+.......
T Consensus         2 i~~~G~~~~GKTsl~~~l~~~~~----~~~~~----t~g~~~~~~~~~--~~~-~~i~D~-~G~------~~~~~~~~~~   63 (167)
T cd04161           2 LLTVGLDNAGKTTLVSALQGEIP----KKVAP----TVGFTPTKLRLD--KYE-VCIFDL-GGG------ANFRGIWVNY   63 (167)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCC----ccccC----cccceEEEEEEC--CEE-EEEEEC-CCc------HHHHHHHHHH
Confidence            68999999999999999984311    11111    122211111111  111 246777 332      1222222222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      .   ...|.+++-.+ ..++..+.+.. ++...+... .. .-+|.+||+||+|+.+...    ...+.+.+. +...+ 
T Consensus        64 ~---~~a~~ii~V~D-~s~~~s~~~~~~~l~~l~~~~-~~-~~~piliv~NK~Dl~~~~~----~~~i~~~~~-l~~~~-  131 (167)
T cd04161          64 Y---AEAHGLVFVVD-SSDDDRVQEVKEILRELLQHP-RV-SGKPILVLANKQDKKNALL----GADVIEYLS-LEKLV-  131 (167)
T ss_pred             H---cCCCEEEEEEE-CCchhHHHHHHHHHHHHHcCc-cc-cCCcEEEEEeCCCCcCCCC----HHHHHHhcC-ccccc-
Confidence            2   46777777332 33333332211 111111110 11 1246899999999976541    233433321 00000 


Q ss_pred             EEEeecCCCChhhhhccccCCc------chhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDA------THVTRLEGLLE  226 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g------~~~~~l~~~l~  226 (263)
                         ....  ..-.++.+||++|      .|+.+..+||.
T Consensus       132 ---~~~~--~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~  165 (167)
T cd04161         132 ---NENK--SLCHIEPCSAIEGLGKKIDPSIVEGLRWLL  165 (167)
T ss_pred             ---CCCC--ceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence               0000  1124667999998      78988888874

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.91  E-value=1.4e-09  Score=99.37  Aligned_cols=21  Identities=38%  Similarity=0.518  Sum_probs=19.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      -++++|.+|+|||||+++|+.
T Consensus         8 ~v~iiGh~d~GKSTL~~~Ll~   28 (425)
T PRK12317          8 NLAVIGHVDHGKSTLVGRLLY   28 (425)
T ss_pred             EEEEECCCCCChHHHHHHHHH
Confidence            478999999999999999984

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=98.91  E-value=5.2e-09  Score=95.80  Aligned_cols=119  Identities=22%  Similarity=0.294  Sum_probs=64.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH--H
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA--L  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~--l  111 (263)
                      -++++|.||+|||||+|+|+    +...+++.+.+|+|++.....+...  +..+ .++|+ +|.-  .. .+..+.  +
T Consensus       205 kVvIvG~~nvGKSSLiN~L~----~~~~aivs~~pgtTrd~~~~~i~~~--g~~v-~l~DT-aG~~--~~-~~~ie~~gi  273 (442)
T TIGR00450       205 KLAIVGSPNVGKSSLLNALL----KQDRAIVSDIKGTTRDVVEGDFELN--GILI-KLLDT-AGIR--EH-ADFVERLGI  273 (442)
T ss_pred             EEEEECCCCCcHHHHHHHHh----CCCCcccCCCCCcEEEEEEEEEEEC--CEEE-EEeeC-CCcc--cc-hhHHHHHHH
Confidence            57899999999999999999    5555677788888665443333332  2222 46777 4421  11 111111  1


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSP  171 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~  171 (263)
                      .........+|.+++-.+. .++...... ++.. +..     .-++.++|+||+|+.+.
T Consensus       274 ~~~~~~~~~aD~il~V~D~-s~~~s~~~~-~l~~-~~~-----~~~piIlV~NK~Dl~~~  325 (442)
T TIGR00450       274 EKSFKAIKQADLVIYVLDA-SQPLTKDDF-LIID-LNK-----SKKPFILVLNKIDLKIN  325 (442)
T ss_pred             HHHHHHHhhCCEEEEEEEC-CCCCChhHH-HHHH-Hhh-----CCCCEEEEEECccCCCc
Confidence            1112222467888874443 222221111 1111 111     11358899999999653

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04177 RSR1 RSR1 subgroup

Probab=98.90  E-value=6.3e-09  Score=82.76  Aligned_cols=55  Identities=18%  Similarity=0.066  Sum_probs=34.9

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .|.+++.||+|+.+....  ..+...+..+..+              ..+++.+||++|.|++++..++..
T Consensus       107 ~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~SA~~~~~i~~~f~~i~~  161 (168)
T cd04177         107 VPMVLVGNKADLEDDRQV--SREDGVSLSQQWG--------------NVPFYETSARKRTNVDEVFIDLVR  161 (168)
T ss_pred             CCEEEEEEChhccccCcc--CHHHHHHHHHHcC--------------CceEEEeeCCCCCCHHHHHHHHHH
Confidence            458889999998765321  1222222222211              124778999999999998887754

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.89  E-value=1.6e-09  Score=86.26  Aligned_cols=59  Identities=27%  Similarity=0.399  Sum_probs=45.7

Q ss_pred             eEEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           11 AVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        11 ~~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      +|++++|+|.|++ .++++++++.     ++.++|++|||||||++.|...  .+..++.+-..+.+
T Consensus         1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~   67 (223)
T COG2884           1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLS   67 (223)
T ss_pred             CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecc
Confidence            5899999999966 4599998776     7999999999999999999765  23444444444443

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=98.89  E-value=7e-09  Score=82.12  Aligned_cols=20  Identities=40%  Similarity=0.529  Sum_probs=18.5

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      ++++|.+|+|||||+++++.
T Consensus         2 i~vvG~~~~GKtsli~~~~~   21 (165)
T cd04146           2 IAVLGASGVGKSALVVRFLT   21 (165)
T ss_pred             EEEECCCCCcHHHHHHHHHh
Confidence            68999999999999999984

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PLN03108 Rab family protein; Provisional

Probab=98.88  E-value=5.2e-09  Score=86.62  Aligned_cols=53  Identities=25%  Similarity=0.116  Sum_probs=34.3

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      ++.+++.||+|+.+....  ..+...+..+..+  .             ..+.+||+++.|++++..++.
T Consensus       112 ~piiiv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~-------------~~~e~Sa~~~~~v~e~f~~l~  164 (210)
T PLN03108        112 MTIMLIGNKCDLAHRRAV--STEEGEQFAKEHG--L-------------IFMEASAKTAQNVEEAFIKTA  164 (210)
T ss_pred             CcEEEEEECccCccccCC--CHHHHHHHHHHcC--C-------------EEEEEeCCCCCCHHHHHHHHH
Confidence            558999999999764321  2233333333221  1             367899999999998776654

>cd04121 Rab40 Rab40 subfamily

Probab=98.88  E-value=6.2e-09  Score=84.80  Aligned_cols=155  Identities=10%  Similarity=0.146  Sum_probs=79.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      =++++|..|+|||||++++......       .+...+.+.+.  ..+...+.. .-.++.|++ |.      +.+....
T Consensus         8 KivviG~~~vGKTsll~~~~~~~~~-------~~~~~t~~~~~~~~~i~~~~~~-~~l~iwDt~-G~------~~~~~l~   72 (189)
T cd04121           8 KFLLVGDSDVGKGEILASLQDGSTE-------SPYGYNMGIDYKTTTILLDGRR-VKLQLWDTS-GQ------GRFCTIF   72 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC-------CCCCCcceeEEEEEEEEECCEE-EEEEEEeCC-Cc------HHHHHHH
Confidence            3679999999999999999853110       00000111111  011111111 112456763 31      2222222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ....   ..+|.+++ +-++.++..+.......+.+....  + -.+.+||.||.|+......  ..++.++..+..+  
T Consensus        73 ~~~~---~~ad~ill-VfD~t~~~Sf~~~~~w~~~i~~~~--~-~~piilVGNK~DL~~~~~v--~~~~~~~~a~~~~--  141 (189)
T cd04121          73 RSYS---RGAQGIIL-VYDITNRWSFDGIDRWIKEIDEHA--P-GVPKILVGNRLHLAFKRQV--ATEQAQAYAERNG--  141 (189)
T ss_pred             HHHh---cCCCEEEE-EEECcCHHHHHHHHHHHHHHHHhC--C-CCCEEEEEECccchhccCC--CHHHHHHHHHHcC--
Confidence            2221   36777777 233455555433221112222211  1 2568999999999654321  2233333333321  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .             ..+.+||++|.|++++..++..
T Consensus       142 ~-------------~~~e~SAk~g~~V~~~F~~l~~  164 (189)
T cd04121         142 M-------------TFFEVSPLCNFNITESFTELAR  164 (189)
T ss_pred             C-------------EEEEecCCCCCCHHHHHHHHHH
Confidence            1             3678999999999999888764

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd01893 Miro1 Miro1 subfamily

Probab=98.88  E-value=6.1e-09  Score=82.70  Aligned_cols=159  Identities=15%  Similarity=0.104  Sum_probs=76.1

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|||||||+++++...-.      ...+.+..... .......... -..++|++ |-      ......+...
T Consensus         3 v~ivG~~~vGKTsl~~~l~~~~~~------~~~~~~~~~~~-~~~~~~~~~~-~~~i~Dt~-G~------~~~~~~~~~~   67 (166)
T cd01893           3 IVLIGDEGVGKSSLIMSLVSEEFP------ENVPRVLPEIT-IPADVTPERV-PTTIVDTS-SR------PQDRANLAAE   67 (166)
T ss_pred             EEEECCCCCCHHHHHHHHHhCcCC------ccCCCcccceE-eeeeecCCeE-EEEEEeCC-Cc------hhhhHHHhhh
Confidence            678999999999999999853210      01111100000 0000001111 12466763 32      1112222222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      +   ...|.+++-. .+.++..+.... ...+.+... .  .-.+.++|.||+|+.+..... .++.....+...++.  
T Consensus        68 ~---~~ad~~ilv~-d~~~~~s~~~~~~~~~~~i~~~-~--~~~pviiv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~--  137 (166)
T cd01893          68 I---RKANVICLVY-SVDRPSTLERIRTKWLPLIRRL-G--VKVPIILVGNKSDLRDGSSQA-GLEEEMLPIMNEFRE--  137 (166)
T ss_pred             c---ccCCEEEEEE-ECCCHHHHHHHHHHHHHHHHHh-C--CCCCEEEEEEchhcccccchh-HHHHHHHHHHHHHhc--
Confidence            2   3567776633 344555443321 111112211 1  125589999999997754210 011111111111111  


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                                ...++.+||++|.|++++...+...
T Consensus       138 ----------~~~~~e~Sa~~~~~v~~lf~~~~~~  162 (166)
T cd01893         138 ----------IETCVECSAKTLINVSEVFYYAQKA  162 (166)
T ss_pred             ----------ccEEEEeccccccCHHHHHHHHHHH
Confidence                      1246789999999999998776543

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.88  E-value=1.7e-09  Score=91.16  Aligned_cols=34  Identities=18%  Similarity=0.304  Sum_probs=24.6

Q ss_pred             EEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744           37 ITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (263)
Q Consensus        37 i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~   70 (263)
                      |+|++||||||+.+.+.+-  ..++++.+|.=||+.
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~   36 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAV   36 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHh
Confidence            6899999999999999664  447889999999986

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.88  E-value=4e-09  Score=84.79  Aligned_cols=156  Identities=23%  Similarity=0.258  Sum_probs=82.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      --++++|+.||||||++++|..    .+..-..+..|    .....+...  ... ..+.|+ +|.  +..+.     +.
T Consensus        15 ~~ililGl~~sGKTtll~~l~~----~~~~~~~pT~g----~~~~~i~~~--~~~-~~~~d~-gG~--~~~~~-----~w   75 (175)
T PF00025_consen   15 IKILILGLDGSGKTTLLNRLKN----GEISETIPTIG----FNIEEIKYK--GYS-LTIWDL-GGQ--ESFRP-----LW   75 (175)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHS----SSEEEEEEESS----EEEEEEEET--TEE-EEEEEE-SSS--GGGGG-----GG
T ss_pred             EEEEEECCCccchHHHHHHhhh----ccccccCcccc----cccceeeeC--cEE-EEEEec-ccc--ccccc-----cc
Confidence            4568999999999999999983    33332333323    222222221  111 246777 443  12221     11


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH--hhc
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIH--EIN  189 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~--~~~  189 (263)
                      +..  ....|.+++-.++ .++..+.+.. .+...+... ... -+|.+|++||.|+.+..    ..+++...+.  .+.
T Consensus        76 ~~y--~~~~~~iIfVvDs-sd~~~l~e~~~~L~~ll~~~-~~~-~~piLIl~NK~D~~~~~----~~~~i~~~l~l~~l~  146 (175)
T PF00025_consen   76 KSY--FQNADGIIFVVDS-SDPERLQEAKEELKELLNDP-ELK-DIPILILANKQDLPDAM----SEEEIKEYLGLEKLK  146 (175)
T ss_dssp             GGG--HTTESEEEEEEET-TGGGGHHHHHHHHHHHHTSG-GGT-TSEEEEEEESTTSTTSS----THHHHHHHTTGGGTT
T ss_pred             eee--ccccceeEEEEec-ccceeecccccchhhhcchh-hcc-cceEEEEeccccccCcc----hhhHHHhhhhhhhcc
Confidence            111  1356777773332 3343332211 111111111 111 15588999999988764    2355655543  221


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ..           ..-.++.+||.+|+|+.+..+||.+
T Consensus       147 ~~-----------~~~~v~~~sa~~g~Gv~e~l~WL~~  173 (175)
T PF00025_consen  147 NK-----------RPWSVFSCSAKTGEGVDEGLEWLIE  173 (175)
T ss_dssp             SS-----------SCEEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             cC-----------CceEEEeeeccCCcCHHHHHHHHHh
Confidence            00           1124678999999999999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04132 Rho4_like Rho4-like subfamily

Probab=98.86  E-value=8.8e-09  Score=83.31  Aligned_cols=157  Identities=18%  Similarity=0.224  Sum_probs=76.5

Q ss_pred             EEEEccCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~-~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      |+++|.+|+|||||+++++...- ......+..++..       .+........-..+.|+ +|.      +.+ ..+..
T Consensus         3 i~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-------~i~~~~~~~~~l~i~Dt-~G~------~~~-~~~~~   67 (187)
T cd04132           3 IVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-------NIQGPNGKIIELALWDT-AGQ------EEY-DRLRP   67 (187)
T ss_pred             EEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-------EEEecCCcEEEEEEEEC-CCc------hhH-HHHHH
Confidence            68999999999999999985421 1100001111100       01111001111245676 331      112 12222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHh--hcccccccceeeCeEEeeEEEEecCCCCCCCCCc--chHHHHHHHHHhhc
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVL--WLDDQLESAVRLDSIITDVVILNKVDLVSPERSG--DSLDELEKEIHEIN  189 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~--~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~--~~~~~~~~~l~~~~  189 (263)
                      ..  ...+|.+++-.+ +.++..+....  +.. .+...   ..-+|.++|.||+|+.+.....  ...++..+..+.. 
T Consensus        68 ~~--~~~ad~ii~v~d-~~~~~s~~~~~~~~~~-~~~~~---~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~-  139 (187)
T cd04132          68 LS--YPDVDVLLICYA-VDNPTSLDNVEDKWFP-EVNHF---CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQ-  139 (187)
T ss_pred             Hh--CCCCCEEEEEEE-CCCHHHHHHHHHHHHH-HHHHh---CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHc-
Confidence            21  246788877333 34444433221  111 11111   1125689999999987542100  0112222222222 


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   +..+.+.+||++|.|++++...+..
T Consensus       140 -------------~~~~~~e~Sa~~~~~v~~~f~~l~~  164 (187)
T cd04132         140 -------------GAFAYLECSAKTMENVEEVFDTAIE  164 (187)
T ss_pred             -------------CCcEEEEccCCCCCCHHHHHHHHHH
Confidence                         1124688999999999998877654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=98.86  E-value=1.3e-08  Score=83.07  Aligned_cols=23  Identities=30%  Similarity=0.481  Sum_probs=20.6

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +.-++++|.+|+|||||+++++.
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~   24 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLK   24 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHH
Confidence            34689999999999999999985

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PLN03110 Rab GTPase; Provisional

Probab=98.86  E-value=1.1e-08  Score=85.11  Aligned_cols=154  Identities=19%  Similarity=0.222  Sum_probs=75.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      -++++|.+|+|||||++++++..    .. ....  .|.+.+.  ..+...+.... ..++++ +|      ...+....
T Consensus        14 Ki~ivG~~~vGKStLi~~l~~~~----~~-~~~~--~t~g~~~~~~~v~~~~~~~~-l~l~Dt-~G------~~~~~~~~   78 (216)
T PLN03110         14 KIVLIGDSGVGKSNILSRFTRNE----FC-LESK--STIGVEFATRTLQVEGKTVK-AQIWDT-AG------QERYRAIT   78 (216)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC----CC-CCCC--CceeEEEEEEEEEECCEEEE-EEEEEC-CC------cHHHHHHH
Confidence            47899999999999999998531    10 0111  1122221  11111111111 245566 33      12232222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ....   ...+.+++ +.++.++..+.... ++. .+....  ..-++.++|.||+|+......  ..+. ...+...+ 
T Consensus        79 ~~~~---~~~~~~il-v~d~~~~~s~~~~~~~~~-~~~~~~--~~~~piiiv~nK~Dl~~~~~~--~~~~-~~~l~~~~-  147 (216)
T PLN03110         79 SAYY---RGAVGALL-VYDITKRQTFDNVQRWLR-ELRDHA--DSNIVIMMAGNKSDLNHLRSV--AEED-GQALAEKE-  147 (216)
T ss_pred             HHHh---CCCCEEEE-EEECCChHHHHHHHHHHH-HHHHhC--CCCCeEEEEEEChhcccccCC--CHHH-HHHHHHHc-
Confidence            2222   35676666 22234444332221 111 111110  112568999999998654321  1122 22222211 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      ..             .++.+||++|.|++++.+++.
T Consensus       148 ~~-------------~~~e~SA~~g~~v~~lf~~l~  170 (216)
T PLN03110        148 GL-------------SFLETSALEATNVEKAFQTIL  170 (216)
T ss_pred             CC-------------EEEEEeCCCCCCHHHHHHHHH
Confidence            11             477899999999999988775

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=98.86  E-value=1e-08  Score=96.62  Aligned_cols=25  Identities=24%  Similarity=0.433  Sum_probs=23.0

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHc
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+.|+++++|.+|+|||||+|+|..
T Consensus         2 ~r~piV~IiG~~d~GKTSLln~l~~   26 (590)
T TIGR00491         2 LRSPIVSVLGHVDHGKTTLLDKIRG   26 (590)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4679999999999999999999984

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=98.86  E-value=1.5e-08  Score=80.73  Aligned_cols=22  Identities=18%  Similarity=0.144  Sum_probs=19.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .-++++|.+|+|||||+++++.
T Consensus         3 ~ki~vvG~~~vGKTsli~~~~~   24 (170)
T cd04115           3 FKIIVIGDSNVGKTCLTYRFCA   24 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3578999999999999999985

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=98.85  E-value=7.7e-09  Score=84.65  Aligned_cols=172  Identities=15%  Similarity=0.107  Sum_probs=84.5

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEec-CCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILN-EFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~-~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~~l~  112 (263)
                      |+++|.+|||||||+|.|+    |.+...... ..+.|...........  +.. ..++|+ ||..-.. ....+...+.
T Consensus         3 i~lvG~~g~GKSsl~N~il----g~~~~~~~~~~~~~T~~~~~~~~~~~--~~~-i~viDT-PG~~d~~~~~~~~~~~i~   74 (196)
T cd01852           3 LVLVGKTGAGKSATGNTIL----GREVFESKLSASSVTKTCQKESAVWD--GRR-VNVIDT-PGLFDTSVSPEQLSKEIV   74 (196)
T ss_pred             EEEECCCCCCHHHHHHHhh----CCCccccccCCCCcccccceeeEEEC--CeE-EEEEEC-cCCCCccCChHHHHHHHH
Confidence            7899999999999999999    444333332 1233333222211111  111 257888 5543221 1233444454


Q ss_pred             HHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchH----HHHHHHHHh
Q 024744          113 QLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSL----DELEKEIHE  187 (263)
Q Consensus       113 ~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~----~~~~~~l~~  187 (263)
                      +.+.. ...++.+++-... ..........  -..+...+.-......++++||+|.+.....+..+    ..++..++.
T Consensus        75 ~~~~~~~~g~~~illVi~~-~~~t~~d~~~--l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~  151 (196)
T cd01852          75 RCLSLSAPGPHAFLLVVPL-GRFTEEEEQA--VETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEK  151 (196)
T ss_pred             HHHHhcCCCCEEEEEEEEC-CCcCHHHHHH--HHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHH
Confidence            44432 2467887774432 2222211110  11122211111112378999999988754321111    334444444


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ......         .+..... ++.++.++.+|.+.+++
T Consensus       152 c~~r~~---------~f~~~~~-~~~~~~q~~~Ll~~i~~  181 (196)
T cd01852         152 CGGRYV---------AFNNKAK-GEEQEQQVKELLAKVES  181 (196)
T ss_pred             hCCeEE---------EEeCCCC-cchhHHHHHHHHHHHHH
Confidence            432211         2233344 67777888888877763

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=98.85  E-value=2.5e-08  Score=81.77  Aligned_cols=167  Identities=16%  Similarity=0.096  Sum_probs=76.9

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|||||||+|+|++........+......++...  ....... .. -..++|+ +|....  .....+.++..
T Consensus         4 I~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~-~l~l~Dt-pG~~~~--~~~~~~~l~~~   76 (197)
T cd04104           4 IAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKR--TPYPHPK-FP-NVTLWDL-PGIGST--AFPPDDYLEEM   76 (197)
T ss_pred             EEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCc--eeeecCC-CC-CceEEeC-CCCCcc--cCCHHHHHHHh
Confidence            7899999999999999998532111001101111111111  0111000 00 1245676 443211  11112223322


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCC---------CcchHHHHHHHH
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPER---------SGDSLDELEKEI  185 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~---------~~~~~~~~~~~l  185 (263)
                      .  ....|.+++...+-  ..... ..+ ...+... .    .+.++|+||+|+..+.+         .+..++.+++.+
T Consensus        77 ~--~~~~d~~l~v~~~~--~~~~d-~~~-~~~l~~~-~----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~  145 (197)
T cd04104          77 K--FSEYDFFIIISSTR--FSSND-VKL-AKAIQCM-G----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNC  145 (197)
T ss_pred             C--ccCcCEEEEEeCCC--CCHHH-HHH-HHHHHHh-C----CCEEEEEecccchhhhhhccccccccHHHHHHHHHHHH
Confidence            1  24678877743321  11111 111 1122221 1    23789999999965321         112344444444


Q ss_pred             HhhcCCCeEEEeecCCCChhhhhccccC--Ccchhhhhhhhhhh
Q 024744          186 HEINSLAHVIRSVRCQVDLSEVLNCRAY--DATHVTRLEGLLEE  227 (263)
Q Consensus       186 ~~~~p~~~i~~~~~~~~~~~~ii~isa~--~g~~~~~l~~~l~~  227 (263)
                      ....+..        .+....++.+|+.  .+.+...|.+.+..
T Consensus       146 ~~~~~~~--------~~~~p~v~~vS~~~~~~~~~~~l~~~~~~  181 (197)
T cd04104         146 LENLQEA--------GVSEPPVFLVSNFDPSDYDFPKLRETLLK  181 (197)
T ss_pred             HHHHHHc--------CCCCCCEEEEeCCChhhcChHHHHHHHHH
Confidence            4333210        1234567888988  45777777766543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=98.85  E-value=6.9e-09  Score=82.42  Aligned_cols=21  Identities=29%  Similarity=0.561  Sum_probs=19.2

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|.+|+|||||++++...
T Consensus         2 i~ivG~~~vGKTsli~~~~~~   22 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSE   22 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999954

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=98.85  E-value=3.4e-09  Score=84.55  Aligned_cols=21  Identities=24%  Similarity=0.229  Sum_probs=18.8

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++|+|.+|+|||||+++++..
T Consensus         1 i~i~G~~~vGKTsli~~~~~~   21 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTN   21 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhC
Confidence            479999999999999999853

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd00157 Rho Rho (Ras homology) family

Probab=98.84  E-value=4.5e-09  Score=83.43  Aligned_cols=21  Identities=29%  Similarity=0.338  Sum_probs=19.2

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|.+|||||||+++++..
T Consensus         3 i~i~G~~~~GKSsli~~l~~~   23 (171)
T cd00157           3 IVVVGDGAVGKTCLLISYTTG   23 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999999854

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=98.84  E-value=1.3e-08  Score=81.47  Aligned_cols=156  Identities=15%  Similarity=0.104  Sum_probs=74.8

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh-hhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA-MINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~-~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      ++++|.+|+|||||+++++...    .   ......|.+.... .+...+... ...+.|+ +|.      ..+.. +..
T Consensus         5 i~vvG~~~vGKTsL~~~~~~~~----f---~~~~~~t~~~~~~~~~~~~~~~~-~l~i~Dt-~G~------~~~~~-l~~   68 (172)
T cd04141           5 IVMLGAGGVGKSAVTMQFISHS----F---PDYHDPTIEDAYKQQARIDNEPA-LLDILDT-AGQ------AEFTA-MRD   68 (172)
T ss_pred             EEEECCCCCcHHHHHHHHHhCC----C---CCCcCCcccceEEEEEEECCEEE-EEEEEeC-CCc------hhhHH-HhH
Confidence            6899999999999999998531    1   0000001110000 011111111 1245666 331      12222 222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ..-  ...|.+++-.+ +.++..+.........+... ....-+|.++|.||+|+.+....  ..++..+..+..  .+ 
T Consensus        69 ~~~--~~~d~~ilv~d-~~~~~Sf~~~~~~~~~i~~~-~~~~~~piilvgNK~Dl~~~~~v--~~~~~~~~a~~~--~~-  139 (172)
T cd04141          69 QYM--RCGEGFIICYS-VTDRHSFQEASEFKKLITRV-RLTEDIPLVLVGNKVDLESQRQV--TTEEGRNLAREF--NC-  139 (172)
T ss_pred             HHh--hcCCEEEEEEE-CCchhHHHHHHHHHHHHHHh-cCCCCCCEEEEEEChhhhhcCcc--CHHHHHHHHHHh--CC-
Confidence            221  24566666222 34444432221111112111 11112568999999998754322  112222222222  11 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  ..+.+||++|.|++++..++..
T Consensus       140 ------------~~~e~Sa~~~~~v~~~f~~l~~  161 (172)
T cd04141         140 ------------PFFETSAALRHYIDDAFHGLVR  161 (172)
T ss_pred             ------------EEEEEecCCCCCHHHHHHHHHH
Confidence                        4678999999999999988764

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.84  E-value=4.1e-09  Score=88.87  Aligned_cols=46  Identities=26%  Similarity=0.393  Sum_probs=42.0

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++|++++|+++..+++.++.     +++|+||+|||||||+++|.+-
T Consensus         1 ~~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120           1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             CeeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            368999999999999999998776     8999999999999999999863

>cd04128 Spg1 Spg1p

Probab=98.84  E-value=8.7e-09  Score=83.39  Aligned_cols=160  Identities=16%  Similarity=0.228  Sum_probs=74.9

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|.+|+|||||+++++...    .   ..+...|.+.+.  ..+..++. .....+.|++ |.      ..+. .+.
T Consensus         3 i~vlG~~~vGKTsLi~~~~~~~----f---~~~~~~T~g~~~~~~~i~~~~~-~~~l~iwDt~-G~------~~~~-~~~   66 (182)
T cd04128           3 IGLLGDAQIGKTSLMVKYVEGE----F---DEDYIQTLGVNFMEKTISIRGT-EITFSIWDLG-GQ------REFI-NML   66 (182)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC----C---CCCCCCccceEEEEEEEEECCE-EEEEEEEeCC-Cc------hhHH-Hhh
Confidence            6789999999999999998531    1   011111122221  11111111 1112456662 21      1222 222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...  ...+|.+++-.+ +.++..+.+.......+... . ....+ ++|.||+|+...... ...+.+.+..+.+... 
T Consensus        67 ~~~--~~~a~~iilv~D-~t~~~s~~~i~~~~~~~~~~-~-~~~~p-ilVgnK~Dl~~~~~~-~~~~~~~~~~~~~a~~-  138 (182)
T cd04128          67 PLV--CNDAVAILFMFD-LTRKSTLNSIKEWYRQARGF-N-KTAIP-ILVGTKYDLFADLPP-EEQEEITKQARKYAKA-  138 (182)
T ss_pred             HHH--CcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHh-C-CCCCE-EEEEEchhccccccc-hhhhhhHHHHHHHHHH-
Confidence            221  246788777333 44444433221101111111 1 11133 678999999642100 0011111112111110 


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                               .+ .+++.+||++|.|++++..++...
T Consensus       139 ---------~~-~~~~e~SAk~g~~v~~lf~~l~~~  164 (182)
T cd04128         139 ---------MK-APLIFCSTSHSINVQKIFKIVLAK  164 (182)
T ss_pred             ---------cC-CEEEEEeCCCCCCHHHHHHHHHHH
Confidence                     01 246789999999999999887653

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.83  E-value=1.9e-08  Score=97.45  Aligned_cols=162  Identities=15%  Similarity=0.155  Sum_probs=83.4

Q ss_pred             CcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCC-cccccchhhhhcCCCCcceeeeeeecCcceEeecchhH
Q 024744           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFG-EEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (263)
Q Consensus        29 ~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g-~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~  107 (263)
                      ..+.|+|+|+|..|+|||||+++|...    ++  ...+.+ .|..+-...+...  +.. ..++|+ +|-      ..+
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~----~v--~~~e~~GIT~~iga~~v~~~--~~~-ItfiDT-PGh------e~F  350 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKT----NV--AAGEAGGITQHIGAYQVETN--GGK-ITFLDT-PGH------EAF  350 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhC----Cc--cccccCceeeeccEEEEEEC--CEE-EEEEEC-CCC------ccc
Confidence            357789999999999999999999742    21  111111 1121111112111  111 257888 442      223


Q ss_pred             HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      .....+.   ....|.+++-.+......+.....+  . ......    ++.++++||+|+.+..     .+++...+..
T Consensus       351 ~~m~~rg---a~~aDiaILVVdAddGv~~qT~e~i--~-~a~~~~----vPiIVviNKiDl~~a~-----~e~V~~eL~~  415 (787)
T PRK05306        351 TAMRARG---AQVTDIVVLVVAADDGVMPQTIEAI--N-HAKAAG----VPIIVAINKIDKPGAN-----PDRVKQELSE  415 (787)
T ss_pred             hhHHHhh---hhhCCEEEEEEECCCCCCHhHHHHH--H-HHHhcC----CcEEEEEECccccccC-----HHHHHHHHHH
Confidence            2222222   2356777764432111111100011  0 011111    4589999999997542     3445444443


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ..-    +...++  ...+++++||++|.|+++|.+++..
T Consensus       416 ~~~----~~e~~g--~~vp~vpvSAktG~GI~eLle~I~~  449 (787)
T PRK05306        416 YGL----VPEEWG--GDTIFVPVSAKTGEGIDELLEAILL  449 (787)
T ss_pred             hcc----cHHHhC--CCceEEEEeCCCCCCchHHHHhhhh
Confidence            211    111111  1135789999999999999988753

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.81  E-value=2.1e-08  Score=94.63  Aligned_cols=159  Identities=16%  Similarity=0.234  Sum_probs=82.4

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC-CCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE-FGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~-~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~  108 (263)
                      .+.|+++++|.+|+|||||+++|...    ++.  ..+ .|.|..+....+.... ... ..++|+ ||-      ..+.
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~----~v~--~~e~~GIT~~ig~~~v~~~~-~~~-i~~iDT-PGh------e~F~  149 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKT----KVA--QGEAGGITQHIGAYHVENED-GKM-ITFLDT-PGH------EAFT  149 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhC----Ccc--cccCCceeecceEEEEEECC-CcE-EEEEEC-CCC------cchh
Confidence            46689999999999999999999842    221  112 2222222211122111 111 247788 442      2232


Q ss_pred             HHHHHHHHhccCCcEEEEcccCCC--CchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 024744          109 QALEQLVQRKERLDHILLETTGLA--NPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIH  186 (263)
Q Consensus       109 ~~l~~~~~~~~~~d~ilie~~G~~--~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~  186 (263)
                      ....+.   ....|.+++-.+...  .+... +.+   .. .....    +|.++++||+|+.+..     .+++.+.++
T Consensus       150 ~~r~rg---a~~aDiaILVVda~dgv~~qT~-e~i---~~-~~~~~----vPiIVviNKiDl~~~~-----~e~v~~~L~  212 (587)
T TIGR00487       150 SMRARG---AKVTDIVVLVVAADDGVMPQTI-EAI---SH-AKAAN----VPIIVAINKIDKPEAN-----PDRVKQELS  212 (587)
T ss_pred             hHHHhh---hccCCEEEEEEECCCCCCHhHH-HHH---HH-HHHcC----CCEEEEEECcccccCC-----HHHHHHHHH
Confidence            222211   245677776332211  11111 111   00 11112    4589999999997542     345555554


Q ss_pred             hhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          187 EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       187 ~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      ...-..    ..++  ....++++||++|+|+++|.+++.
T Consensus       213 ~~g~~~----~~~~--~~~~~v~iSAktGeGI~eLl~~I~  246 (587)
T TIGR00487       213 EYGLVP----EDWG--GDTIFVPVSALTGDGIDELLDMIL  246 (587)
T ss_pred             HhhhhH----HhcC--CCceEEEEECCCCCChHHHHHhhh
Confidence            332100    0011  112578999999999999998875

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=98.81  E-value=8.9e-09  Score=85.84  Aligned_cols=153  Identities=18%  Similarity=0.133  Sum_probs=73.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhh--cCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMIN--EGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~--~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      -++++|.+|+|||||+++++.....       .....|.+.+.....  ..... .-..++|+ +|.      +.+. .+
T Consensus        15 Ki~vvG~~gvGKTsli~~~~~~~f~-------~~~~~tig~~~~~~~~~~~~~~-~~l~i~Dt-~G~------~~~~-~~   78 (219)
T PLN03071         15 KLVIVGDGGTGKTTFVKRHLTGEFE-------KKYEPTIGVEVHPLDFFTNCGK-IRFYCWDT-AGQ------EKFG-GL   78 (219)
T ss_pred             EEEEECcCCCCHHHHHHHHhhCCCC-------CccCCccceeEEEEEEEECCeE-EEEEEEEC-CCc------hhhh-hh
Confidence            5789999999999999998753210       011111222211111  11111 11245666 332      1121 22


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ....  ....+.+++ +-.+.++..+.........+...   ..-++.++|.||+|+.+....   .+.+ . +.... .
T Consensus        79 ~~~~--~~~~~~~il-vfD~~~~~s~~~i~~w~~~i~~~---~~~~piilvgNK~Dl~~~~v~---~~~~-~-~~~~~-~  146 (219)
T PLN03071         79 RDGY--YIHGQCAII-MFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVK---AKQV-T-FHRKK-N  146 (219)
T ss_pred             hHHH--cccccEEEE-EEeCCCHHHHHHHHHHHHHHHHh---CCCCcEEEEEEchhhhhccCC---HHHH-H-HHHhc-C
Confidence            2221  135566655 22344444332221101111111   112568999999998654211   1222 1 11111 1


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   -..+.+||++|.|++++..++..
T Consensus       147 -------------~~~~e~SAk~~~~i~~~f~~l~~  169 (219)
T PLN03071        147 -------------LQYYEISAKSNYNFEKPFLYLAR  169 (219)
T ss_pred             -------------CEEEEcCCCCCCCHHHHHHHHHH
Confidence                         13578999999999999888764

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=98.81  E-value=3.1e-08  Score=73.44  Aligned_cols=139  Identities=19%  Similarity=0.274  Sum_probs=80.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCC--CCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKH--GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~--~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      -++++|..|+|||||.++|-++..  .+.-+|--++.|.                     +|+ +|-. ... ..+-.+ 
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~~d~~~---------------------IDT-PGEy-~~~-~~~Y~a-   57 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEFNDKGD---------------------IDT-PGEY-FEH-PRWYHA-   57 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhhhcccceeeccCccc---------------------cCC-chhh-hhh-hHHHHH-
Confidence            368999999999999999985421  1222333333322                     233 2110 000 011122 


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                        ++.....+|.|++- -++.+|...     ..+.+...    ...+.|-+++|+|+.+..    +++..+..|++.   
T Consensus        58 --L~tt~~dadvi~~v-~~and~~s~-----f~p~f~~~----~~k~vIgvVTK~DLaed~----dI~~~~~~L~ea---  118 (148)
T COG4917          58 --LITTLQDADVIIYV-HAANDPESR-----FPPGFLDI----GVKKVIGVVTKADLAEDA----DISLVKRWLREA---  118 (148)
T ss_pred             --HHHHhhccceeeee-ecccCcccc-----CCcccccc----cccceEEEEecccccchH----hHHHHHHHHHHc---
Confidence              22223567777662 223333221     11222222    123377799999999653    578888888765   


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                 +..++|.+|+.+..|+++|.+.+..
T Consensus       119 -----------Ga~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917         119 -----------GAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             -----------CCcceEEEeccCcccHHHHHHHHHh
Confidence                       3457999999999999999987753

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.80  E-value=3.3e-08  Score=95.05  Aligned_cols=162  Identities=14%  Similarity=0.182  Sum_probs=83.7

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcC--CCCcceeeeeeecCcceEeecchhH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEG--EGGALVEEWVELANGCICCTVKHSL  107 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~--~~~~~~~~~~~l~~g~~~~~~~~~~  107 (263)
                      .+.|+|+|+|..|+|||||+++|....    ++. ....|.|..+....+...  ..... ..++|+ +|-      ..+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~----~~~-~e~~GiTq~i~~~~v~~~~~~~~~k-ItfiDT-PGh------e~F  308 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQ----IAQ-KEAGGITQKIGAYEVEFEYKDENQK-IVFLDT-PGH------EAF  308 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhcc----Ccc-ccCCccccccceEEEEEEecCCceE-EEEEEC-CcH------HHH
Confidence            466899999999999999999998431    110 111121222111111110  01111 246787 442      233


Q ss_pred             HHHHHHHHHhccCCcEEEEcccCCC--CchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHH
Q 024744          108 VQALEQLVQRKERLDHILLETTGLA--NPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEI  185 (263)
Q Consensus       108 ~~~l~~~~~~~~~~d~ilie~~G~~--~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l  185 (263)
                      .....+.+   ...|.+++-.+...  .+.....+.    .+.. ..    +|.++++||+|+.+..     .+++.+.+
T Consensus       309 ~~mr~rg~---~~aDiaILVVDA~dGv~~QT~E~I~----~~k~-~~----iPiIVViNKiDl~~~~-----~e~v~~eL  371 (742)
T CHL00189        309 SSMRSRGA---NVTDIAILIIAADDGVKPQTIEAIN----YIQA-AN----VPIIVAINKIDKANAN-----TERIKQQL  371 (742)
T ss_pred             HHHHHHHH---HHCCEEEEEEECcCCCChhhHHHHH----HHHh-cC----ceEEEEEECCCccccC-----HHHHHHHH
Confidence            33333332   35677777432211  111111110    1111 11    5689999999997642     34455555


Q ss_pred             HhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          186 HEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       186 ~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +....    +...++  ...+++++||++|.|+++|.+++..
T Consensus       372 ~~~~l----l~e~~g--~~vpvv~VSAktG~GIdeLle~I~~  407 (742)
T CHL00189        372 AKYNL----IPEKWG--GDTPMIPISASQGTNIDKLLETILL  407 (742)
T ss_pred             HHhcc----chHhhC--CCceEEEEECCCCCCHHHHHHhhhh
Confidence            43211    011111  1235789999999999999988754

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.80  E-value=5e-08  Score=76.26  Aligned_cols=98  Identities=26%  Similarity=0.344  Sum_probs=54.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC-C--CCc--ceeeeeeecCcceEeecchh
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-E--GGA--LVEEWVELANGCICCTVKHS  106 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~-~--~~~--~~~~~~~l~~g~~~~~~~~~  106 (263)
                      +++++|++||||||++..+...  ..+.++.++..|++..... ...+... .  ...  ....+...+.|+.+......
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSG-GAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRA   79 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCcc-cchhcCceEhhheecCCCceEEEcCCcCcccccchh
Confidence            3689999999999999999764  4588999999997652211 1111110 0  000  00012222222222222222


Q ss_pred             HHHHHHHHHHhccCCcEEEEcccCCCCc
Q 024744          107 LVQALEQLVQRKERLDHILLETTGLANP  134 (263)
Q Consensus       107 ~~~~l~~~~~~~~~~d~ilie~~G~~~p  134 (263)
                      ..+.+ +.++ ...+|+|+|++.|....
T Consensus        80 ~~~~~-~~~~-~~~~D~iiIDtaG~~~~  105 (148)
T cd03114          80 TPEVI-RVLD-AAGFDVIIVETVGVGQS  105 (148)
T ss_pred             HHHHH-HHHH-hcCCCEEEEECCccChh
Confidence            33333 3333 25899999999997643

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.79  E-value=1.7e-08  Score=88.46  Aligned_cols=53  Identities=17%  Similarity=0.033  Sum_probs=35.5

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhh-hhhhhc
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEG-LLEEHQ  229 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~-~l~~~~  229 (263)
                      +|.++|+||+|+.+..       .+.+.++...             ...+++++||+.+.++++|.+ .+.++.
T Consensus       215 KPvI~VlNK~Dl~~~~-------~~~~~l~~~~-------------~~~~iI~iSA~~e~~L~~L~~~~i~~~l  268 (318)
T cd01899         215 KPMVIAANKADIPDAE-------NNISKLRLKY-------------PDEIVVPTSAEAELALRRAAKQGLIKYD  268 (318)
T ss_pred             CcEEEEEEHHHccChH-------HHHHHHHhhC-------------CCCeEEEEeCcccccHHHHHHhhHHHhC
Confidence            3589999999986542       2222333222             234689999999999999986 465543

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.78  E-value=8.3e-09  Score=86.68  Aligned_cols=46  Identities=33%  Similarity=0.481  Sum_probs=42.3

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .++|+++|++.+|++.++++++++.     +++|+||+|||||||++.+++
T Consensus         2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121           2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999976899998875     899999999999999999987

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.76  E-value=1.2e-08  Score=87.24  Aligned_cols=160  Identities=19%  Similarity=0.197  Sum_probs=86.4

Q ss_pred             ccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC--CCcccccchhhhhcCCCCcceeeeeeecCcceEee
Q 024744           25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE--FGEEIGVERAMINEGEGGALVEEWVELANGCICCT  102 (263)
Q Consensus        25 ~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~--~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~  102 (263)
                      ..+.+.+.|+|+++|+.|||||||+++|+..      ++..++  |.| .+.......-. .+..+ -+.|+  -+....
T Consensus       171 ~gr~~~s~pviavVGYTNaGKsTLikaLT~A------al~p~drLFAT-LDpT~h~a~Lp-sg~~v-lltDT--vGFisd  239 (410)
T KOG0410|consen  171 VGREGESSPVIAVVGYTNAGKSTLIKALTKA------ALYPNDRLFAT-LDPTLHSAHLP-SGNFV-LLTDT--VGFISD  239 (410)
T ss_pred             hccccCCCceEEEEeecCccHHHHHHHHHhh------hcCccchhhee-ccchhhhccCC-CCcEE-EEeec--hhhhhh
Confidence            3445678899999999999999999999843      222222  222 33222222111 11111 12232  111233


Q ss_pred             cchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccc-----cccceeeCeEEeeEEEEecCCCCCCCCCcch
Q 024744          103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQ-----LESAVRLDSIITDVVILNKVDLVSPERSGDS  177 (263)
Q Consensus       103 ~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~-----l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~  177 (263)
                      +...+..+++..+..-..+|+ |+...++.+|..-.+.......     +.+.-++..   .+=|=||+|..+..-    
T Consensus       240 LP~~LvaAF~ATLeeVaeadl-llHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~---mieVdnkiD~e~~~~----  311 (410)
T KOG0410|consen  240 LPIQLVAAFQATLEEVAEADL-LLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQN---MIEVDNKIDYEEDEV----  311 (410)
T ss_pred             CcHHHHHHHHHHHHHHhhcce-EEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhH---HHhhccccccccccC----
Confidence            445566677777665566777 5567778888643322111011     111111111   333558888765431    


Q ss_pred             HHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          178 LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       178 ~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                   ..          .....+++||.+|+|++++.+.+.
T Consensus       312 -------------e~----------E~n~~v~isaltgdgl~el~~a~~  337 (410)
T KOG0410|consen  312 -------------EE----------EKNLDVGISALTGDGLEELLKAEE  337 (410)
T ss_pred             -------------cc----------ccCCccccccccCccHHHHHHHHH
Confidence                         00          011257899999999999988775

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.76  E-value=2.1e-08  Score=91.12  Aligned_cols=59  Identities=20%  Similarity=0.349  Sum_probs=37.0

Q ss_pred             eeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          158 TDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      +.++++||+|+.+.+......+++.+.++...            ....+++++||++|+|++.|.+++...
T Consensus       136 ~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~------------~~~~~ii~vSA~~g~gi~~L~e~L~~~  194 (406)
T TIGR03680       136 NIVIVQNKIDLVSKEKALENYEEIKEFVKGTV------------AENAPIIPVSALHNANIDALLEAIEKF  194 (406)
T ss_pred             eEEEEEEccccCCHHHHHHHHHHHHhhhhhcc------------cCCCeEEEEECCCCCChHHHHHHHHHh
Confidence            36889999999875421111223333222111            011257899999999999999998763

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK12736 elongation factor Tu; Reviewed

Probab=98.76  E-value=4e-08  Score=89.00  Aligned_cols=21  Identities=29%  Similarity=0.305  Sum_probs=19.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      -++++|..++|||||+++|++
T Consensus        14 ni~i~Ghvd~GKSTL~~~L~~   34 (394)
T PRK12736         14 NIGTIGHVDHGKTTLTAAITK   34 (394)
T ss_pred             EEEEEccCCCcHHHHHHHHHh
Confidence            588999999999999999985

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.76  E-value=2.3e-09  Score=88.65  Aligned_cols=47  Identities=28%  Similarity=0.350  Sum_probs=43.4

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++|+||+..++++.++.     +++++||+|||||||+|.|++.
T Consensus         2 ~~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~   53 (250)
T COG0411           2 TPLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGF   53 (250)
T ss_pred             CceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccc
Confidence            4678999999999999999999887     8999999999999999999854

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=98.76  E-value=2.1e-08  Score=76.61  Aligned_cols=53  Identities=23%  Similarity=0.130  Sum_probs=34.1

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHH-HHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELE-KEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~-~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      ++.++++||+|+......    .... ........             ..+++.+|+.++.|+.++..++.
T Consensus       103 ~~~ivv~nk~D~~~~~~~----~~~~~~~~~~~~~-------------~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         103 IPIILVGNKIDLPEERVV----SEEELAEQLAKEL-------------GVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CcEEEEEeccccccccch----HHHHHHHHHHhhc-------------CCcEEEEecCCCCChHHHHHHHh
Confidence            458999999999876521    1111 11111111             23578899999999999888763

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.75  E-value=2.4e-08  Score=83.27  Aligned_cols=20  Identities=40%  Similarity=0.537  Sum_probs=18.5

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      |+++|.+|+|||||+.+|+.
T Consensus         2 v~i~Gh~~~GKttL~~~ll~   21 (219)
T cd01883           2 LVVIGHVDAGKSTTTGHLLY   21 (219)
T ss_pred             EEEecCCCCChHHHHHHHHH
Confidence            68999999999999999974

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=98.74  E-value=1.3e-08  Score=80.25  Aligned_cols=92  Identities=26%  Similarity=0.322  Sum_probs=56.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccc-----hhhhhcCCCCcceeeeeeecCcceEeecchh
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVE-----RAMINEGEGGALVEEWVELANGCICCTVKHS  106 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d-----~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~  106 (263)
                      +++|+|++|||||||+++|+..  ..|.+++++.++.+. ..++     .......+  .   ..+.+.+++.||.....
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~~-~~~d~~~~D~~~~~~ag--a---~~v~~~~~~~~~~~~~~   74 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDHHD-FDIDKNGKDSYRHREAG--A---DQVIVASSRRYAFMHET   74 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc-ccCCCccccHHHHHhCC--C---CEEEEecCCeEEEEEec
Confidence            4789999999999999999876  458899999988654 3333     22222211  1   12333355655542210


Q ss_pred             -HHHHHHHHHHhccCCcEEEEcccCC
Q 024744          107 -LVQALEQLVQRKERLDHILLETTGL  131 (263)
Q Consensus       107 -~~~~l~~~~~~~~~~d~ilie~~G~  131 (263)
                       ....+.+++......|+||+|..+-
T Consensus        75 ~~~~~l~~ll~~~~~~D~vlVEG~k~  100 (155)
T TIGR00176        75 QEERDLEALLDRLPDLDIILVEGFKD  100 (155)
T ss_pred             CCCcCHHHHHhhCCCCCEEEECCCCC
Confidence             1224444444334589999988663

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.74  E-value=1e-08  Score=90.26  Aligned_cols=48  Identities=29%  Similarity=0.447  Sum_probs=43.5

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+.|++++|+|+||+..++++.++.     ++++.||+|||||||++.|.+-
T Consensus         2 ~~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGf   54 (352)
T COG3842           2 PKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGF   54 (352)
T ss_pred             CCceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            36789999999999999999998776     7999999999999999999853

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.74  E-value=1.6e-08  Score=84.21  Aligned_cols=46  Identities=26%  Similarity=0.393  Sum_probs=42.3

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+++++++++|++..+++++++.     +++|+|++|+|||||+|.+.+.
T Consensus         2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116           2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            478999999999999999999887     7999999999999999999753

>CHL00071 tufA elongation factor Tu

Probab=98.73  E-value=3.7e-08  Score=89.66  Aligned_cols=22  Identities=27%  Similarity=0.229  Sum_probs=20.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -++++|.+++|||||+++|+..
T Consensus        14 ~i~i~Gh~d~GKSTL~~~Ll~~   35 (409)
T CHL00071         14 NIGTIGHVDHGKTTLTAAITMT   35 (409)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999853

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=98.73  E-value=8e-09  Score=98.94  Aligned_cols=20  Identities=35%  Similarity=0.514  Sum_probs=18.7

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      ++|+|.+|+|||||+++|+.
T Consensus        27 i~iiGh~~~GKSTL~~~Ll~   46 (632)
T PRK05506         27 FITCGSVDDGKSTLIGRLLY   46 (632)
T ss_pred             EEEECCCCCChHHHHHHHHH
Confidence            77999999999999999985

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=98.72  E-value=2.3e-08  Score=79.88  Aligned_cols=20  Identities=25%  Similarity=0.306  Sum_probs=18.4

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      ++++|.+|+|||||++++..
T Consensus         3 ~~i~G~~~~GKtsl~~~~~~   22 (173)
T cd04130           3 CVLVGDGAVGKTSLIVSYTT   22 (173)
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            57999999999999999975

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.72  E-value=1.9e-08  Score=81.66  Aligned_cols=45  Identities=27%  Similarity=0.455  Sum_probs=41.4

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHH
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYI   52 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l   52 (263)
                      ..+++++++++.+||+.+++.++++.     +++++||+|+|||||++++
T Consensus         4 ~~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~l   53 (253)
T COG1117           4 KIPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCL   53 (253)
T ss_pred             ccceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHH
Confidence            46889999999999999999998665     8999999999999999887

>TIGR01393 lepA GTP-binding protein LepA

Probab=98.72  E-value=2.1e-07  Score=88.28  Aligned_cols=74  Identities=22%  Similarity=0.293  Sum_probs=45.1

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCC
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNL  236 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~  236 (263)
                      ++.++++||+|+.+..     .+...+.++.....           ...+++.+||++|.|+++|.+++......+ ...
T Consensus       123 ipiIiViNKiDl~~~~-----~~~~~~el~~~lg~-----------~~~~vi~vSAktG~GI~~Lle~I~~~lp~p-~~~  185 (595)
T TIGR01393       123 LEIIPVINKIDLPSAD-----PERVKKEIEEVIGL-----------DASEAILASAKTGIGIEEILEAIVKRVPPP-KGD  185 (595)
T ss_pred             CCEEEEEECcCCCccC-----HHHHHHHHHHHhCC-----------CcceEEEeeccCCCCHHHHHHHHHHhCCCC-CCC
Confidence            3488999999986542     12333333332210           123578999999999999999887543322 223


Q ss_pred             CCCCEEEEEEE
Q 024744          237 HDNNVRTLSIC  247 (263)
Q Consensus       237 ~~~~i~~~~~~  247 (263)
                      .+.+++..++.
T Consensus       186 ~~~pl~~~V~~  196 (595)
T TIGR01393       186 PDAPLKALIFD  196 (595)
T ss_pred             CCCCeEEEEEE
Confidence            34456655554

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04126 Rab20 Rab20 subfamily

Probab=98.72  E-value=4.8e-08  Score=81.43  Aligned_cols=21  Identities=24%  Similarity=0.482  Sum_probs=18.9

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|.+|+|||||+++++..
T Consensus         3 IvivG~~~vGKTSLi~r~~~~   23 (220)
T cd04126           3 VVLLGDMNVGKTSLLHRYMER   23 (220)
T ss_pred             EEEECCCCCcHHHHHHHHhcC
Confidence            579999999999999999853

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd01870 RhoA_like RhoA-like subfamily

Probab=98.71  E-value=3.3e-08  Score=78.91  Aligned_cols=21  Identities=29%  Similarity=0.276  Sum_probs=19.3

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|.+|||||||+++++..
T Consensus         4 i~iiG~~~~GKTsl~~~~~~~   24 (175)
T cd01870           4 LVIVGDGACGKTCLLIVFSKD   24 (175)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999864

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.71  E-value=2.2e-08  Score=82.65  Aligned_cols=49  Identities=31%  Similarity=0.419  Sum_probs=44.8

Q ss_pred             CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+.+.|++++|+++||++.++++.++.     +++|+|++|+|||||++.++..
T Consensus         4 ~~~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gl   57 (263)
T COG1127           4 SPEPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGL   57 (263)
T ss_pred             CCcceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhcc
Confidence            347899999999999999999998776     7999999999999999999865

>cd04135 Tc10 TC10 subfamily

Probab=98.69  E-value=3.2e-08  Score=78.92  Aligned_cols=21  Identities=29%  Similarity=0.300  Sum_probs=19.0

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|.+|+|||||++++...
T Consensus         3 i~i~G~~~~GKTsl~~~~~~~   23 (174)
T cd04135           3 CVVVGDGAVGKTCLLMSYAND   23 (174)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999853

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd01871 Rac1_like Rac1-like subfamily

Probab=98.69  E-value=4.3e-08  Score=78.67  Aligned_cols=21  Identities=24%  Similarity=0.241  Sum_probs=19.0

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|.+|+|||||+.+++..
T Consensus         4 i~iiG~~~vGKSsli~~~~~~   24 (174)
T cd01871           4 CVVVGDGAVGKTCLLISYTTN   24 (174)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999999853

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.68  E-value=2.2e-08  Score=82.45  Aligned_cols=45  Identities=24%  Similarity=0.437  Sum_probs=41.4

Q ss_pred             ceEEEecceeEe-CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           10 LAVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        10 ~~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+|++++|++.| ++..++.++++.     +|+|+|++|||||||+++|-.
T Consensus         2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lng   52 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNG   52 (258)
T ss_pred             ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhc
Confidence            579999999999 999999998776     799999999999999999974

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.68  E-value=1.5e-08  Score=93.67  Aligned_cols=54  Identities=17%  Similarity=0.149  Sum_probs=32.5

Q ss_pred             eEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhh
Q 024744          159 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRL  221 (263)
Q Consensus       159 ~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l  221 (263)
                      .++++||+|+++..+  ..++.+.+.++.+....       +.....+++++||++|+|++.+
T Consensus       163 iIvvvNKiD~~~~~~--~~~~~i~~~l~~~~~~~-------~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        163 LVVAVNKMDLVDYSE--EVFERIREDYLTFAEQL-------PGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             eEEEEEeeccccchh--HHHHHHHHHHHHHHHhc-------CCCCCceEEEEEeecCCCcccc
Confidence            678999999985431  13444444444322111       0012346899999999998754

>cd01882 BMS1 Bms1

Probab=98.67  E-value=3.2e-08  Score=82.85  Aligned_cols=22  Identities=32%  Similarity=0.597  Sum_probs=20.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++|+|||||+|.|+..
T Consensus        41 ~i~ivG~~~~GKstl~~~l~~~   62 (225)
T cd01882          41 VVAVVGPPGVGKTTLIKSLVKN   62 (225)
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            7899999999999999999854

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.67  E-value=2.3e-08  Score=87.55  Aligned_cols=45  Identities=27%  Similarity=0.382  Sum_probs=40.6

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .|+++||+|+||+..++++.++.     +++++||+|+|||||||.|.+.
T Consensus         3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL   52 (338)
T COG3839           3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL   52 (338)
T ss_pred             EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            68999999999998788888776     7999999999999999999753

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=3.1e-08  Score=84.94  Aligned_cols=55  Identities=20%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             CCCCCCCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            1 MEDEEEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      |..-++-++.++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~~~~~~~~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   60 (265)
T PRK10575          1 MQEYTNHSDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRH   60 (265)
T ss_pred             CccccCCCCceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            445567788899999999999988889888776     8999999999999999999864

>cd04134 Rho3 Rho3 subfamily

Probab=98.66  E-value=9e-08  Score=77.80  Aligned_cols=21  Identities=33%  Similarity=0.506  Sum_probs=19.1

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|.+|+|||||++++...
T Consensus         3 ivivG~~~vGKTsli~~~~~~   23 (189)
T cd04134           3 VVVLGDGACGKTSLLNVFTRG   23 (189)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            689999999999999999853

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>PRK09602 translation-associated GTPase; Reviewed

Probab=98.66  E-value=8.9e-08  Score=86.44  Aligned_cols=22  Identities=27%  Similarity=0.214  Sum_probs=19.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -++|+|+||||||||+|+|++.
T Consensus         3 kigivG~pnvGKSTlfn~Lt~~   24 (396)
T PRK09602          3 TIGLVGKPNVGKSTFFNAATLA   24 (396)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999943

>cd01874 Cdc42 Cdc42 subfamily

Probab=98.66  E-value=5.3e-08  Score=78.21  Aligned_cols=21  Identities=24%  Similarity=0.241  Sum_probs=19.1

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|.+|+|||||++++...
T Consensus         4 i~vvG~~~vGKTsl~~~~~~~   24 (175)
T cd01874           4 CVVVGDGAVGKTCLLISYTTN   24 (175)
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            679999999999999999853

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.66  E-value=2.5e-07  Score=79.52  Aligned_cols=20  Identities=35%  Similarity=0.391  Sum_probs=18.6

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      |+|+|.+|+|||||+++|+.
T Consensus         2 v~ivGh~~~GKTtL~~~Ll~   21 (270)
T cd01886           2 IGIIAHIDAGKTTTTERILY   21 (270)
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            68999999999999999974

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.65  E-value=1.5e-07  Score=86.33  Aligned_cols=57  Identities=16%  Similarity=0.227  Sum_probs=37.9

Q ss_pred             eEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          159 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       159 ~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .++++||+|+++.+......+++++.++...            ....+++++||++|.|++.|.+.|.+
T Consensus       174 iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~------------~~~~~iipVSA~~G~nI~~Ll~~L~~  230 (460)
T PTZ00327        174 IIILQNKIDLVKEAQAQDQYEEIRNFVKGTI------------ADNAPIIPISAQLKYNIDVVLEYICT  230 (460)
T ss_pred             EEEEEecccccCHHHHHHHHHHHHHHHHhhc------------cCCCeEEEeeCCCCCCHHHHHHHHHh
Confidence            7889999999875422112233333332211            12347899999999999999999875

>cd01875 RhoG RhoG subfamily

Probab=98.65  E-value=1.2e-07  Score=77.25  Aligned_cols=166  Identities=14%  Similarity=0.175  Sum_probs=77.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~-~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      -++++|..|+|||||++++....- ......+...+.....     +  .+. ..-..+.|++ |.      +.+. .+.
T Consensus         5 ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~-----~--~~~-~~~l~i~Dt~-G~------e~~~-~l~   68 (191)
T cd01875           5 KCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTA-----V--DGR-TVSLNLWDTA-GQ------EEYD-RLR   68 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEE-----E--CCE-EEEEEEEECC-Cc------hhhh-hhh
Confidence            478999999999999999985321 1000001111110000     1  111 1112466763 32      1221 233


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ...  ...+|.+++- -.+.++..+.... .....+...  .+ -+|.+||.||.|+.+...   ..+.+    +.....
T Consensus        69 ~~~--~~~a~~~ilv-ydit~~~Sf~~~~~~w~~~i~~~--~~-~~piilvgNK~DL~~~~~---~~~~~----~~~~~~  135 (191)
T cd01875          69 TLS--YPQTNVFIIC-FSIASPSSYENVRHKWHPEVCHH--CP-NVPILLVGTKKDLRNDAD---TLKKL----KEQGQA  135 (191)
T ss_pred             hhh--ccCCCEEEEE-EECCCHHHHHHHHHHHHHHHHhh--CC-CCCEEEEEeChhhhcChh---hHHHH----hhccCC
Confidence            322  2467777762 3355565543331 111112211  11 256899999999965421   01111    110000


Q ss_pred             CeEEEe---ec-CCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744          192 AHVIRS---VR-CQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       192 ~~i~~~---~~-~~~~~~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                       .+-..   .. .....-..+.+||++|.|++++..++....
T Consensus       136 -~v~~~~~~~~a~~~~~~~~~e~SAk~g~~v~e~f~~l~~~~  176 (191)
T cd01875         136 -PITPQQGGALAKQIHAVKYLECSALNQDGVKEVFAEAVRAV  176 (191)
T ss_pred             -CCCHHHHHHHHHHcCCcEEEEeCCCCCCCHHHHHHHHHHHH
Confidence             00000   00 000112467899999999999988877543

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=98.64  E-value=7.8e-08  Score=75.70  Aligned_cols=39  Identities=23%  Similarity=0.479  Sum_probs=34.3

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~   70 (263)
                      .++++|+|+.|||||||+.+|+..  .+|.++++|.+..+.
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~hh~   42 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHAHHD   42 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEecCCC
Confidence            579999999999999999999775  468999999988664

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.64  E-value=4.8e-08  Score=84.04  Aligned_cols=52  Identities=21%  Similarity=0.298  Sum_probs=46.6

Q ss_pred             CCCCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            4 EEEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus        17 ~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl   73 (271)
T PRK14238         17 ETAPKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRM   73 (271)
T ss_pred             ccCCCceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            567888999999999999988888887665     8999999999999999999854

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.64  E-value=5.4e-08  Score=81.39  Aligned_cols=48  Identities=21%  Similarity=0.275  Sum_probs=43.1

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++++++++++++|++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         4 ~~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   56 (225)
T PRK10247          4 NSPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASL   56 (225)
T ss_pred             CCceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            35689999999999988899998776     7999999999999999999854

>PRK12735 elongation factor Tu; Reviewed

Probab=98.63  E-value=1.7e-07  Score=84.93  Aligned_cols=21  Identities=29%  Similarity=0.314  Sum_probs=19.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .++++|.+++|||||+++|+.
T Consensus        14 ~i~iiGhvd~GKSTL~~~L~~   34 (396)
T PRK12735         14 NVGTIGHVDHGKTTLTAAITK   34 (396)
T ss_pred             EEEEECcCCCCHHHHHHHHHH
Confidence            588999999999999999985

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.63  E-value=5.1e-08  Score=82.97  Aligned_cols=47  Identities=23%  Similarity=0.358  Sum_probs=42.9

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +|+++++++++++|++..++++.++.     +++|+|++|||||||++.|.+
T Consensus         3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14242          3 SPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNR   54 (253)
T ss_pred             CCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHh
Confidence            57889999999999988888888766     799999999999999999985

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.63  E-value=1.7e-07  Score=75.29  Aligned_cols=125  Identities=21%  Similarity=0.264  Sum_probs=57.6

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      -+.+.|+|++|||||+|+..|.....-.  .+.+.++..+..     +.. ..... ..++|+ ||-  -.++..+.+.+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~--T~tS~e~n~~~~-----~~~-~~~~~-~~lvD~-PGH--~rlr~~~~~~~   70 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVP--TVTSMENNIAYN-----VNN-SKGKK-LRLVDI-PGH--PRLRSKLLDEL   70 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS-----B---SSEEEECC-----GSS-TCGTC-ECEEEE-TT---HCCCHHHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCC--eeccccCCceEE-----eec-CCCCE-EEEEEC-CCc--HHHHHHHHHhh
Confidence            4789999999999999999998642111  111222111011     111 11111 357898 552  23454433332


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPE  172 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~  172 (263)
                      ..    ...+..|++-.+...++..+.+.. ++.+.+.........++.+|+.||.|+..+.
T Consensus        71 ~~----~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~  128 (181)
T PF09439_consen   71 KY----LSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK  128 (181)
T ss_dssp             HH----HGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred             hc----hhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence            21    234666777455444443332211 1122222211223446799999999998764

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.63  E-value=4e-08  Score=87.16  Aligned_cols=48  Identities=23%  Similarity=0.327  Sum_probs=43.4

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +..+|+++|++|+|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus        38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl   90 (340)
T PRK13536         38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGM   90 (340)
T ss_pred             CceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            35689999999999999999998766     8999999999999999999864

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.63  E-value=2.7e-08  Score=90.40  Aligned_cols=20  Identities=35%  Similarity=0.536  Sum_probs=18.4

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      ++++|..+||||||+++|+.
T Consensus         3 ~~~vGhvd~GKSTL~~~ll~   22 (406)
T TIGR02034         3 FLTCGSVDDGKSTLIGRLLH   22 (406)
T ss_pred             EEEECCCCCCchhhhHHHHH
Confidence            67999999999999999974

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=4.6e-08  Score=84.07  Aligned_cols=51  Identities=27%  Similarity=0.425  Sum_probs=43.6

Q ss_pred             CCCCCCCCCceEEEecceeEeCCc--ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            1 MEDEEEDPPLAVRIDETTHEFSNS--HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      |||.    ++++++++++++|++.  .++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 ~~~~----~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl   58 (269)
T PRK13648          1 MEDK----NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGI   58 (269)
T ss_pred             CCCC----CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            6776    6799999999999763  477877665     8999999999999999999864

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.63  E-value=1.7e-07  Score=88.78  Aligned_cols=26  Identities=27%  Similarity=0.473  Sum_probs=23.4

Q ss_pred             CcceEEEEEEccCCCcHHHHHHHHHc
Q 024744           29 DVSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        29 ~~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..+.|+|+++|.+|+|||||+++|.+
T Consensus         3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~   28 (586)
T PRK04004          3 KLRQPIVVVLGHVDHGKTTLLDKIRG   28 (586)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            35678999999999999999999974

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.62  E-value=2.9e-08  Score=82.63  Aligned_cols=43  Identities=26%  Similarity=0.472  Sum_probs=39.1

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHH
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~   53 (263)
                      ||+++||+|+|++..++++.++.     +++++|++||||||+++.+-
T Consensus         1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMIN   48 (309)
T COG1125           1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMIN   48 (309)
T ss_pred             CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHh
Confidence            58999999999999999998776     79999999999999987774

>cd04103 Centaurin_gamma Centaurin gamma

Probab=98.62  E-value=5.4e-08  Score=76.91  Aligned_cols=20  Identities=45%  Similarity=0.504  Sum_probs=18.3

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      ++++|.+|+|||||+++++.
T Consensus         3 i~vvG~~gvGKTsli~~~~~   22 (158)
T cd04103           3 LGIVGNLQSGKSALVHRYLT   22 (158)
T ss_pred             EEEECCCCCcHHHHHHHHHh
Confidence            68999999999999999874

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.62  E-value=4e-08  Score=84.43  Aligned_cols=49  Identities=27%  Similarity=0.285  Sum_probs=43.5

Q ss_pred             CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+.++++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (269)
T PRK11831          3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQ   56 (269)
T ss_pred             CccceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            456789999999999988888887776     7999999999999999999864

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.61  E-value=1.4e-07  Score=85.76  Aligned_cols=58  Identities=22%  Similarity=0.366  Sum_probs=36.4

Q ss_pred             eEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          159 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       159 ~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      .++|+||+|+.+.++.....+++.+.++...            ....+++++||++|.|+++|.+++...
T Consensus       142 iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~------------~~~~~ii~vSA~~g~gI~~L~~~L~~~  199 (411)
T PRK04000        142 IVIVQNKIDLVSKERALENYEQIKEFVKGTV------------AENAPIIPVSALHKVNIDALIEAIEEE  199 (411)
T ss_pred             EEEEEEeeccccchhHHHHHHHHHHHhcccc------------CCCCeEEEEECCCCcCHHHHHHHHHHh
Confidence            6888999999875421111222322222110            012357899999999999999988763

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.60  E-value=4.3e-08  Score=85.22  Aligned_cols=46  Identities=24%  Similarity=0.341  Sum_probs=41.9

Q ss_pred             ceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++.+++++|+|| +..++++.++.     +++++|++|||||||++.|++.
T Consensus         3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl   54 (293)
T COG1131           3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGL   54 (293)
T ss_pred             ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            4688999999999 69999998776     8999999999999999999864

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.60  E-value=5.1e-08  Score=85.25  Aligned_cols=47  Identities=23%  Similarity=0.321  Sum_probs=42.6

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..++++++++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus         2 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl   53 (303)
T TIGR01288         2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGM   53 (303)
T ss_pred             CcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5689999999999998899988776     7999999999999999999864

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.60  E-value=7.2e-08  Score=80.04  Aligned_cols=50  Identities=16%  Similarity=0.177  Sum_probs=43.9

Q ss_pred             CCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+++++++++++++|++...+++.++.     +++|+|++|+|||||++.|.+.
T Consensus         6 ~~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   60 (214)
T PRK13543          6 HTAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGL   60 (214)
T ss_pred             CCCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            3456789999999999988888887776     7999999999999999999854

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.60  E-value=7.6e-08  Score=82.67  Aligned_cols=50  Identities=24%  Similarity=0.372  Sum_probs=44.5

Q ss_pred             CCCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744            5 EEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+.+.+++++++++++|++..++++.++.     +++|+|++|||||||++.|++
T Consensus        15 ~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   69 (268)
T PRK14248         15 PEAKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINR   69 (268)
T ss_pred             CCCCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            35667789999999999988899988776     799999999999999999985

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=98.59  E-value=1e-07  Score=75.04  Aligned_cols=154  Identities=19%  Similarity=0.288  Sum_probs=78.6

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCC-cceeeeeeecCcceEeecchhHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGG-ALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      |+++|.+|+|||||++++....-.       .....|.+.+.........+ ..--++.+++ |      .+.+ ..+..
T Consensus         2 i~vvG~~~vGKtsl~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~-g------~~~~-~~~~~   66 (162)
T PF00071_consen    2 IVVVGDSGVGKTSLINRLINGEFP-------ENYIPTIGIDSYSKEVSIDGKPVNLEIWDTS-G------QERF-DSLRD   66 (162)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSSTT-------SSSETTSSEEEEEEEEEETTEEEEEEEEEET-T------SGGG-HHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhhccc-------ccccccccccccccccccccccccccccccc-c------cccc-ccccc
Confidence            689999999999999999864211       01111122221111110001 1112455652 2      1222 22333


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ..  ....|.+++-. .+.++..+..+....+.+.....  ...+.+++.||.|+.+..+.  ..++.++..+..+  . 
T Consensus        67 ~~--~~~~~~~ii~f-d~~~~~S~~~~~~~~~~i~~~~~--~~~~iivvg~K~D~~~~~~v--~~~~~~~~~~~~~--~-  136 (162)
T PF00071_consen   67 IF--YRNSDAIIIVF-DVTDEESFENLKKWLEEIQKYKP--EDIPIIVVGNKSDLSDEREV--SVEEAQEFAKELG--V-  136 (162)
T ss_dssp             HH--HTTESEEEEEE-ETTBHHHHHTHHHHHHHHHHHST--TTSEEEEEEETTTGGGGSSS--CHHHHHHHHHHTT--S-
T ss_pred             cc--ccccccccccc-ccccccccccccccccccccccc--ccccceeeeccccccccccc--hhhHHHHHHHHhC--C-
Confidence            32  24677777732 34555544332111122222111  11458889999999874432  2345555555443  2 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  225 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l  225 (263)
                                  ..+.+||+++.|+.++...+
T Consensus       137 ------------~~~e~Sa~~~~~v~~~f~~~  156 (162)
T PF00071_consen  137 ------------PYFEVSAKNGENVKEIFQEL  156 (162)
T ss_dssp             ------------EEEEEBTTTTTTHHHHHHHH
T ss_pred             ------------EEEEEECCCCCCHHHHHHHH
Confidence                        35778999999998876554

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>COG2229 Predicted GTPase [General function prediction only]

Probab=98.59  E-value=1.4e-06  Score=68.99  Aligned_cols=155  Identities=20%  Similarity=0.201  Sum_probs=85.4

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCC-------------CCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKH-------------GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANG   97 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~-------------~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g   97 (263)
                      .-.-|+++|+-||||||+++++.....             +++...+..|+|.        +...++..  ..++++ ||
T Consensus         9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~--------~~~~~~~~--v~Lfgt-PG   77 (187)
T COG2229           9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS--------IELDEDTG--VHLFGT-PG   77 (187)
T ss_pred             cceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccc--------eEEcCcce--EEEecC-CC
Confidence            344678999999999999999975321             1122334444443        33222111  135565 44


Q ss_pred             ceEeecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcch
Q 024744           98 CICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDS  177 (263)
Q Consensus        98 ~~~~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~  177 (263)
                             +...+.+.+.+.+ . ..-.++-..... |..... ..+-+.+.....    ++.+|++||.|+.++.    -
T Consensus        78 -------q~RF~fm~~~l~~-g-a~gaivlVDss~-~~~~~a-~~ii~f~~~~~~----ip~vVa~NK~DL~~a~----p  138 (187)
T COG2229          78 -------QERFKFMWEILSR-G-AVGAIVLVDSSR-PITFHA-EEIIDFLTSRNP----IPVVVAINKQDLFDAL----P  138 (187)
T ss_pred             -------cHHHHHHHHHHhC-C-cceEEEEEecCC-CcchHH-HHHHHHHhhccC----CCEEEEeeccccCCCC----C
Confidence                   3445566666653 3 333333122222 222111 111111222211    5599999999998875    3


Q ss_pred             HHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          178 LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       178 ~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      .+++++.+..-+-.             .+++.++|.++++..+..+.+...
T Consensus       139 pe~i~e~l~~~~~~-------------~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         139 PEKIREALKLELLS-------------VPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             HHHHHHHHHhccCC-------------CceeeeecccchhHHHHHHHHHhh
Confidence            47778877654311             257889999999987776665544

>PRK00049 elongation factor Tu; Reviewed

Probab=98.59  E-value=2.4e-07  Score=83.98  Aligned_cols=21  Identities=29%  Similarity=0.314  Sum_probs=19.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      -++++|..++|||||+++|+.
T Consensus        14 ni~iiGhvd~GKSTL~~~L~~   34 (396)
T PRK00049         14 NVGTIGHVDHGKTTLTAAITK   34 (396)
T ss_pred             EEEEEeECCCCHHHHHHHHHH
Confidence            588999999999999999985

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.58  E-value=6.3e-08  Score=84.79  Aligned_cols=47  Identities=19%  Similarity=0.242  Sum_probs=42.7

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++|+|++..++++.++.     +++++|++|||||||++.|++.
T Consensus         5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl   56 (306)
T PRK13537          5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGL   56 (306)
T ss_pred             CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            3589999999999999999998776     7999999999999999999864

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=98.57  E-value=4.9e-07  Score=74.46  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      |.++++|++|||||||+++|...
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~   23 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTG   23 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Confidence            46889999999999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.57  E-value=3.4e-08  Score=79.30  Aligned_cols=58  Identities=31%  Similarity=0.390  Sum_probs=45.6

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~   68 (263)
                      ||+++||+|+||+..++++.+..     +..++||+|||||||+..+.+.  .....+.+-..+.
T Consensus         1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~   65 (252)
T COG4604           1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLEL   65 (252)
T ss_pred             CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeec
Confidence            58899999999999999998664     8999999999999999887643  2234455544443

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.57  E-value=3.8e-08  Score=81.46  Aligned_cols=46  Identities=30%  Similarity=0.442  Sum_probs=42.1

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++|+|+||+..++++.++.     +.+++|++||||||.++.|+..
T Consensus         1 ~~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgl   51 (300)
T COG4152           1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGL   51 (300)
T ss_pred             CceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhcc
Confidence            468999999999999999998776     8999999999999999999853

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=98.56  E-value=2.4e-07  Score=75.02  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=19.1

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|-+|+|||||+++++..
T Consensus         8 ivvvGd~~vGKTsli~~~~~~   28 (182)
T cd04172           8 IVVVGDSQCGKTALLHVFAKD   28 (182)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999999854

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.55  E-value=9.9e-08  Score=79.04  Aligned_cols=44  Identities=25%  Similarity=0.400  Sum_probs=38.1

Q ss_pred             eEEEecceeEeCCc----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++++++|+|.|+..    ++++++++.     +++|+|++|||||||+|.|-.
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            46799999999763    788888776     899999999999999999964

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=98.55  E-value=3e-07  Score=73.41  Aligned_cols=41  Identities=22%  Similarity=0.400  Sum_probs=34.2

Q ss_pred             CcceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           29 DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        29 ~~~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      .+..|+++|+|++|||||||+++|+..  ..|.+++++.++.+
T Consensus         3 ~~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~   45 (173)
T PRK10751          3 KTMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (173)
T ss_pred             CCCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            356789999999999999999999865  34788999988644

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.54  E-value=1.4e-07  Score=80.59  Aligned_cols=42  Identities=36%  Similarity=0.597  Sum_probs=37.8

Q ss_pred             eEEEecceeEeCC-----cccCCCcceE-----EEEEEccCCCcHHHHHHHH
Q 024744           11 AVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYI   52 (263)
Q Consensus        11 ~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l   52 (263)
                      ||++++|+|.|..     ..++++.++.     +++|+|++|||||||++.+
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~i   52 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLI   52 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHH
Confidence            6899999999986     5788888776     8999999999999999998

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.54  E-value=1.1e-07  Score=81.30  Aligned_cols=49  Identities=14%  Similarity=0.295  Sum_probs=43.3

Q ss_pred             CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +..+.+++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         8 ~~~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl   61 (257)
T PRK11247          8 NQGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL   61 (257)
T ss_pred             cCCCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            345779999999999988889888776     7999999999999999999864

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1.3e-07  Score=80.48  Aligned_cols=47  Identities=15%  Similarity=0.232  Sum_probs=42.8

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +++++++++++++|++..++++.++.     +++|+|++|||||||++.|.+
T Consensus         2 ~~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   53 (252)
T PRK14255          2 AKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNR   53 (252)
T ss_pred             CcceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            57789999999999988889887766     799999999999999999985

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.54  E-value=6.6e-08  Score=79.44  Aligned_cols=46  Identities=22%  Similarity=0.356  Sum_probs=43.0

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++..||..+++++.++.     +++++|++|||||||+++|+..
T Consensus         2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl   52 (237)
T COG0410           2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGL   52 (237)
T ss_pred             CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            578999999999999999998887     8999999999999999999865

>cd04129 Rho2 Rho2 subfamily

Probab=98.53  E-value=3.1e-07  Score=74.46  Aligned_cols=21  Identities=29%  Similarity=0.290  Sum_probs=18.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      -++|+|.+|+|||||++++..
T Consensus         3 Ki~ivG~~g~GKStLl~~l~~   23 (187)
T cd04129           3 KLVIVGDGACGKTSLLSVFTL   23 (187)
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            368999999999999999974

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.53  E-value=1.1e-07  Score=78.49  Aligned_cols=45  Identities=22%  Similarity=0.189  Sum_probs=41.2

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (207)
T PRK13539          2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGL   51 (207)
T ss_pred             EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            78999999999988889988776     8999999999999999999864

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.53  E-value=3.1e-07  Score=76.22  Aligned_cols=66  Identities=20%  Similarity=0.229  Sum_probs=55.2

Q ss_pred             CCCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccCC--CCeEEEEecCCCc
Q 024744            5 EEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGKH--GKRIAVILNEFGE   70 (263)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~~--~~~~~ii~~~~g~   70 (263)
                      .+...++|.+++|+.+|++++.+.+.+-.     -.+|+|++|||||||++.++...+  ...+.++...+|.
T Consensus        25 ~~~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~   97 (257)
T COG1119          25 IEINEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGK   97 (257)
T ss_pred             CCCCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccC
Confidence            34556889999999999999999998776     489999999999999999988743  4566777777775

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.53  E-value=1.5e-07  Score=77.90  Aligned_cols=45  Identities=22%  Similarity=0.316  Sum_probs=41.6

Q ss_pred             ceEEEecceeEeCCcc----cCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           10 LAVRIDETTHEFSNSH----ENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~----~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++++|+++.|+...    +++++++.     +++|+|.+|||||||.+.|+.
T Consensus         2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124           2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhc
Confidence            5899999999999988    99998887     799999999999999999984

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=98.52  E-value=2.9e-07  Score=76.36  Aligned_cols=21  Identities=33%  Similarity=0.442  Sum_probs=18.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      -++++|.+|||||||+++++.
T Consensus        11 kv~liG~~g~GKTtLi~~~~~   31 (215)
T PTZ00132         11 KLILVGDGGVGKTTFVKRHLT   31 (215)
T ss_pred             eEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999987763

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.52  E-value=1.1e-07  Score=80.23  Aligned_cols=45  Identities=27%  Similarity=0.445  Sum_probs=40.9

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus         2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (239)
T cd03296           2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGL   51 (239)
T ss_pred             EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999988889888776     7999999999999999999864

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.52  E-value=4.1e-07  Score=83.27  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=19.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .++++|..++|||||+++|+.
T Consensus         9 ~v~i~Ghvd~GKSTL~~~ll~   29 (426)
T TIGR00483         9 NVAFIGHVDHGKSTTVGHLLY   29 (426)
T ss_pred             EEEEEeccCCcHHHHHHHHHH
Confidence            578999999999999999974

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.51  E-value=2.1e-07  Score=75.65  Aligned_cols=45  Identities=31%  Similarity=0.382  Sum_probs=42.2

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +|+++|++.+-.+++.++++++.     +.+|+||+|||||||++.|+++
T Consensus         1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGe   50 (259)
T COG4559           1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGE   50 (259)
T ss_pred             CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCc
Confidence            58999999999999999999886     8999999999999999999975

>cd04131 Rnd Rnd subfamily

Probab=98.51  E-value=2.4e-07  Score=74.70  Aligned_cols=21  Identities=24%  Similarity=0.434  Sum_probs=19.1

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|.+|+|||||++++...
T Consensus         4 iv~vG~~~vGKTsli~~~~~~   24 (178)
T cd04131           4 IVVVGDVQCGKTALLQVFAKD   24 (178)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            679999999999999999854

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=98.51  E-value=4.8e-07  Score=83.14  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=19.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .++++|..++|||||+.+|+.
T Consensus         9 nv~i~Ghvd~GKSTL~~~Ll~   29 (446)
T PTZ00141          9 NLVVIGHVDSGKSTTTGHLIY   29 (446)
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            588999999999999999975

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.51  E-value=1.3e-07  Score=80.47  Aligned_cols=46  Identities=26%  Similarity=0.367  Sum_probs=41.3

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   52 (253)
T TIGR02323         2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGR   52 (253)
T ss_pred             ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            579999999999988888887665     7999999999999999999865

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.51  E-value=1e-07  Score=79.38  Aligned_cols=44  Identities=18%  Similarity=0.305  Sum_probs=39.4

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265           1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999998889888776     7999999999999999999864

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.51  E-value=1.4e-07  Score=80.56  Aligned_cols=50  Identities=22%  Similarity=0.354  Sum_probs=43.9

Q ss_pred             CCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+..+++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         8 ~~~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   62 (260)
T PRK10744          8 ATAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRM   62 (260)
T ss_pred             cCCCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            3457789999999999988888887776     7999999999999999999854

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.50  E-value=1.2e-07  Score=80.96  Aligned_cols=45  Identities=24%  Similarity=0.409  Sum_probs=40.3

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (255)
T PRK11248          1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGF   50 (255)
T ss_pred             CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999988888887765     7999999999999999999864

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.50  E-value=1.5e-07  Score=86.15  Aligned_cols=48  Identities=29%  Similarity=0.395  Sum_probs=44.3

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++++++++++|+||+.+++++.++.     +.+++|-+|||||||++.|...
T Consensus         5 ~~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv   57 (500)
T COG1129           5 TPPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGV   57 (500)
T ss_pred             ccceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCc
Confidence            46799999999999999999999887     8999999999999999999853

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.50  E-value=1.2e-07  Score=78.64  Aligned_cols=44  Identities=23%  Similarity=0.376  Sum_probs=39.2

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (213)
T cd03259           1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGL   49 (213)
T ss_pred             CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999988899988776     7999999999999999999854

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.50  E-value=1.2e-07  Score=81.50  Aligned_cols=45  Identities=20%  Similarity=0.231  Sum_probs=40.5

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (271)
T PRK13638          1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGL   50 (271)
T ss_pred             CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            47899999999988899988776     7999999999999999999864

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.50  E-value=9.1e-08  Score=80.50  Aligned_cols=44  Identities=27%  Similarity=0.396  Sum_probs=39.5

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261           1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999988899988776     7999999999999999999864

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.50  E-value=1.6e-07  Score=81.37  Aligned_cols=47  Identities=30%  Similarity=0.429  Sum_probs=41.5

Q ss_pred             CceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.+++++|++++|+ +..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl   55 (283)
T PRK13636          3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGI   55 (283)
T ss_pred             CceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            55899999999996 57788887776     8999999999999999999864

>PRK05433 GTP-binding protein LepA; Provisional

Probab=98.50  E-value=1.7e-06  Score=82.28  Aligned_cols=74  Identities=18%  Similarity=0.270  Sum_probs=44.2

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCC
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNL  236 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~  236 (263)
                      ++.++|+||+|+.+..     .+...+.++.....           +..+++.+||++|.|+++|.+++......+ ...
T Consensus       127 lpiIvViNKiDl~~a~-----~~~v~~ei~~~lg~-----------~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P-~~~  189 (600)
T PRK05433        127 LEIIPVLNKIDLPAAD-----PERVKQEIEDVIGI-----------DASDAVLVSAKTGIGIEEVLEAIVERIPPP-KGD  189 (600)
T ss_pred             CCEEEEEECCCCCccc-----HHHHHHHHHHHhCC-----------CcceEEEEecCCCCCHHHHHHHHHHhCccc-cCC
Confidence            3488999999986542     23333334332110           123578999999999999999986543322 223


Q ss_pred             CCCCEEEEEEE
Q 024744          237 HDNNVRTLSIC  247 (263)
Q Consensus       237 ~~~~i~~~~~~  247 (263)
                      .+.+.+.+++.
T Consensus       190 ~~~pl~~~Vfd  200 (600)
T PRK05433        190 PDAPLKALIFD  200 (600)
T ss_pred             CCCCceEEEEE
Confidence            34455544443

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.50  E-value=1.3e-07  Score=77.79  Aligned_cols=45  Identities=20%  Similarity=0.189  Sum_probs=40.6

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   50 (204)
T PRK13538          1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL   50 (204)
T ss_pred             CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999998889888776     7999999999999999999864

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.50  E-value=1.2e-07  Score=85.17  Aligned_cols=51  Identities=16%  Similarity=0.232  Sum_probs=44.6

Q ss_pred             CCCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            5 EEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++...+++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         8 ~~~~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl   63 (375)
T PRK09452          8 PSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGF   63 (375)
T ss_pred             hccCCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            45667789999999999998888887665     7999999999999999999864

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.50  E-value=1.3e-07  Score=77.65  Aligned_cols=45  Identities=22%  Similarity=0.310  Sum_probs=40.5

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   50 (200)
T PRK13540          1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGL   50 (200)
T ss_pred             CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999988899988776     7999999999999999999864

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.50  E-value=1.6e-07  Score=78.56  Aligned_cols=46  Identities=20%  Similarity=0.207  Sum_probs=40.0

Q ss_pred             ceEEEecceeEeCCc----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++|++.    .++++.++.     +++|+|++|||||||++.|.+.
T Consensus         5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   59 (228)
T PRK10584          5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGL   59 (228)
T ss_pred             ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            589999999999862    478887665     8999999999999999999864

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=98.49  E-value=3e-07  Score=78.05  Aligned_cols=130  Identities=16%  Similarity=0.212  Sum_probs=62.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec----chhHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV----KHSLV  108 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~----~~~~~  108 (263)
                      ..|+++|.+|+|||||+|+|+    |.+.+.+..-.++|..........  .+.. ..++|+ ||......    .....
T Consensus        32 ~~IllvG~tGvGKSSliNaLl----g~~~~~v~~~~~~T~~~~~~~~~~--~g~~-i~vIDT-PGl~~~~~~~~~~~~~~  103 (249)
T cd01853          32 LTILVLGKTGVGKSSTINSIF----GERKAATSAFQSETLRVREVSGTV--DGFK-LNIIDT-PGLLESVMDQRVNRKIL  103 (249)
T ss_pred             eEEEEECCCCCcHHHHHHHHh----CCCCcccCCCCCceEEEEEEEEEE--CCeE-EEEEEC-CCcCcchhhHHHHHHHH
Confidence            368899999999999999999    444444433223333322211111  1222 257888 55432211    11222


Q ss_pred             HHHHHHHHhccCCcEEEEcc-cCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCC
Q 024744          109 QALEQLVQRKERLDHILLET-TGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPER  173 (263)
Q Consensus       109 ~~l~~~~~~~~~~d~ilie~-~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~  173 (263)
                      ..+.+.+. ...++.+++-. .+...... .+.. +...+...+..+.....++|+||+|...++.
T Consensus       104 ~~I~~~l~-~~~idvIL~V~rlD~~r~~~-~d~~-llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~  166 (249)
T cd01853         104 SSIKRYLK-KKTPDVVLYVDRLDMYRRDY-LDLP-LLRAITDSFGPSIWRNAIVVLTHAASSPPDG  166 (249)
T ss_pred             HHHHHHHh-ccCCCEEEEEEcCCCCCCCH-HHHH-HHHHHHHHhChhhHhCEEEEEeCCccCCCCC
Confidence            33444443 24677766522 11111111 1100 0111222111111123899999999987653

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=1.8e-07  Score=80.65  Aligned_cols=51  Identities=18%  Similarity=0.152  Sum_probs=44.8

Q ss_pred             CCCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            5 EEDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -++.++++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus        14 ~~~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl   69 (274)
T PRK14265         14 INPDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRM   69 (274)
T ss_pred             cCCCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            35667799999999999988888887766     8999999999999999999853

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=1.5e-07  Score=79.38  Aligned_cols=45  Identities=22%  Similarity=0.417  Sum_probs=41.3

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   54 (237)
T PRK11614          5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGD   54 (237)
T ss_pred             EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            79999999999988889888776     8999999999999999999864

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=2e-07  Score=80.10  Aligned_cols=49  Identities=20%  Similarity=0.293  Sum_probs=43.6

Q ss_pred             CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++.+++++|++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus         9 ~~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   62 (269)
T PRK14259          9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRM   62 (269)
T ss_pred             CCCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            456789999999999998899988776     7999999999999999999853

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=98.49  E-value=4.9e-07  Score=75.93  Aligned_cols=22  Identities=18%  Similarity=0.383  Sum_probs=19.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -++++|.+|+|||+|+++++..
T Consensus        15 KIvvvGd~~VGKTsLi~r~~~~   36 (232)
T cd04174          15 KLVLVGDVQCGKTAMLQVLAKD   36 (232)
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4679999999999999999854

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04167 Snu114p Snu114p subfamily

Probab=98.49  E-value=7.7e-08  Score=79.78  Aligned_cols=61  Identities=18%  Similarity=0.197  Sum_probs=35.9

Q ss_pred             EeeEEEEecCCCCCCCC---CcchHHHHHHHHHhhcCCCeEEEeec----CCCChhhhhccccCCcchh
Q 024744          157 ITDVVILNKVDLVSPER---SGDSLDELEKEIHEINSLAHVIRSVR----CQVDLSEVLNCRAYDATHV  218 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~---~~~~~~~~~~~l~~~~p~~~i~~~~~----~~~~~~~ii~isa~~g~~~  218 (263)
                      ++.++++||+|++..+.   ..+..+++.+.++++|+.+..+....    ...+ ..++..|++.+.+.
T Consensus       124 ~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~~~~~~~~~~~~~~~p~~-~nv~~~s~~~~w~~  191 (213)
T cd04167         124 LPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNNIIASFSTTLSFLFSPEN-GNVCFASSKFGFCF  191 (213)
T ss_pred             CCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHHHHHHhcCCCceEeccCC-CeEEEEecCCCeEE
Confidence            45899999999873211   01245677888888887765543311    1111 23556677776654

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.49  E-value=2e-07  Score=80.04  Aligned_cols=49  Identities=16%  Similarity=0.282  Sum_probs=43.6

Q ss_pred             CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++.+++++|++++|++++++++.++.     +++|+|++|||||||++.|.+.
T Consensus        16 ~~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl   69 (267)
T PRK14237         16 EEEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM   69 (267)
T ss_pred             CCCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            456789999999999988899988776     7999999999999999999854

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.49  E-value=1.6e-07  Score=77.87  Aligned_cols=45  Identities=24%  Similarity=0.426  Sum_probs=39.3

Q ss_pred             eEEEecceeEe-CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++| ++..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673         1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999 467788887766     7999999999999999999854

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.49  E-value=1.5e-07  Score=79.56  Aligned_cols=45  Identities=22%  Similarity=0.375  Sum_probs=40.1

Q ss_pred             eEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|+ +.+++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   51 (243)
T TIGR02315         1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRL   51 (243)
T ss_pred             CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            478999999998 77889888776     8999999999999999999864

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.48  E-value=1.5e-07  Score=74.56  Aligned_cols=44  Identities=27%  Similarity=0.413  Sum_probs=41.5

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHH
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYI   52 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l   52 (263)
                      .+++.+.++-|+||+.++++++++.     +|.|+|.+|||||||++++
T Consensus         4 ~~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCi   52 (256)
T COG4598           4 ENALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCI   52 (256)
T ss_pred             ccceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHH
Confidence            4689999999999999999999887     9999999999999999998

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.48  E-value=1.6e-07  Score=80.47  Aligned_cols=49  Identities=24%  Similarity=0.310  Sum_probs=44.2

Q ss_pred             CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++...+++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   56 (265)
T PRK10253          3 ESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRL   56 (265)
T ss_pred             ccccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            456789999999999998899988776     8999999999999999999864

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.48  E-value=1.5e-07  Score=79.07  Aligned_cols=47  Identities=23%  Similarity=0.358  Sum_probs=40.4

Q ss_pred             CceEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++++|++    ..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   58 (233)
T PRK11629          3 KILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGL   58 (233)
T ss_pred             CceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999975    4578887665     7999999999999999999854

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.48  E-value=1.6e-07  Score=78.89  Aligned_cols=45  Identities=31%  Similarity=0.428  Sum_probs=39.7

Q ss_pred             eEEEecceeEeCCc----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++.    .++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   54 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL   54 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999876    788887665     8999999999999999999864

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=98.48  E-value=2.6e-07  Score=75.87  Aligned_cols=52  Identities=17%  Similarity=0.121  Sum_probs=33.4

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ++.++|.||+|+.....   ..+.+ . +...+.              -..+.+||++|.|+.++..++..
T Consensus       100 ~piilvgNK~Dl~~~~v---~~~~~-~-~~~~~~--------------~~~~e~SAk~~~~v~~~F~~l~~  151 (200)
T smart00176      100 IPIVLCGNKVDVKDRKV---KAKSI-T-FHRKKN--------------LQYYDISAKSNYNFEKPFLWLAR  151 (200)
T ss_pred             CCEEEEEECcccccccC---CHHHH-H-HHHHcC--------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence            56899999999864321   11111 1 111111              13578999999999999988764

Ran is involved in the active transport of proteins through nuclear pores.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.48  E-value=1.8e-07  Score=79.42  Aligned_cols=45  Identities=24%  Similarity=0.346  Sum_probs=41.0

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|+++..+++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   52 (250)
T PRK11264          3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL   52 (250)
T ss_pred             cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            69999999999988889988776     7999999999999999999854

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.48  E-value=2e-07  Score=79.69  Aligned_cols=48  Identities=23%  Similarity=0.299  Sum_probs=42.5

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.++++++|+++.|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         9 ~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   61 (259)
T PRK14274          9 KQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM   61 (259)
T ss_pred             CCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            46789999999999988888887665     7999999999999999999853

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.47  E-value=1.5e-07  Score=79.18  Aligned_cols=45  Identities=29%  Similarity=0.377  Sum_probs=40.4

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (236)
T TIGR03864         1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRL   50 (236)
T ss_pred             CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999988889887766     8999999999999999999864

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.47  E-value=3.8e-07  Score=77.64  Aligned_cols=47  Identities=15%  Similarity=0.288  Sum_probs=42.1

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (254)
T PRK14273          5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRM   56 (254)
T ss_pred             CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4489999999999988888887766     8999999999999999999854

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=1.8e-07  Score=79.71  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=41.5

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++|++++|++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (255)
T PRK11300          4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGF   54 (255)
T ss_pred             ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            489999999999988888887665     8999999999999999999864

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.47  E-value=1.4e-07  Score=78.48  Aligned_cols=44  Identities=25%  Similarity=0.382  Sum_probs=38.4

Q ss_pred             EEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++    ..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            468999999987    6788887665     8999999999999999999854

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.47  E-value=1.9e-07  Score=79.70  Aligned_cols=46  Identities=28%  Similarity=0.316  Sum_probs=41.3

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++|+++.++++.++.     +++|+|++|||||||++.|.+.
T Consensus         5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (258)
T PRK11701          5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSAR   55 (258)
T ss_pred             ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            479999999999988888887665     7999999999999999999864

>cd04133 Rop_like Rop subfamily

Probab=98.47  E-value=2.6e-07  Score=74.42  Aligned_cols=21  Identities=19%  Similarity=0.192  Sum_probs=19.1

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|-+|+|||||+.+++..
T Consensus         4 ivv~G~~~vGKTsli~~~~~~   24 (176)
T cd04133           4 CVTVGDGAVGKTCMLICYTSN   24 (176)
T ss_pred             EEEECCCCCcHHHHHHHHhcC
Confidence            689999999999999999853

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.47  E-value=4e-07  Score=82.52  Aligned_cols=21  Identities=29%  Similarity=0.300  Sum_probs=19.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .++++|..++|||||+++|+.
T Consensus        14 ~i~i~Ghvd~GKStL~~~L~~   34 (394)
T TIGR00485        14 NIGTIGHVDHGKTTLTAAITT   34 (394)
T ss_pred             EEEEEeecCCCHHHHHHHHHh
Confidence            588999999999999999974

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=1.8e-07  Score=79.76  Aligned_cols=45  Identities=27%  Similarity=0.399  Sum_probs=40.9

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   51 (255)
T PRK11231          2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARL   51 (255)
T ss_pred             EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            68999999999998899887766     7999999999999999999864

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.47  E-value=1.9e-07  Score=77.66  Aligned_cols=45  Identities=31%  Similarity=0.369  Sum_probs=39.4

Q ss_pred             eEEEecceeEeCCc----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|++.    +++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGL   54 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999876    788887665     7999999999999999999864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.47  E-value=1.8e-07  Score=78.96  Aligned_cols=46  Identities=26%  Similarity=0.363  Sum_probs=41.2

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   51 (242)
T TIGR03411         1 PILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGK   51 (242)
T ss_pred             CeEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999988889888776     7999999999999999999864

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.46  E-value=1.7e-07  Score=78.33  Aligned_cols=45  Identities=31%  Similarity=0.390  Sum_probs=39.4

Q ss_pred             eEEEecceeEeCCc----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++|+++|++.    .++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   54 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGL   54 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999875    688887665     8999999999999999999864

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=2.8e-07  Score=78.73  Aligned_cols=48  Identities=21%  Similarity=0.340  Sum_probs=42.9

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.+++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         9 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   61 (258)
T PRK14268          9 AQPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRM   61 (258)
T ss_pred             cceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            36789999999999988889888776     7999999999999999999854

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=1.8e-07  Score=78.99  Aligned_cols=45  Identities=20%  Similarity=0.299  Sum_probs=40.8

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   52 (241)
T PRK10895          3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGI   52 (241)
T ss_pred             eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            79999999999988888887665     8999999999999999999864

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.46  E-value=2e-07  Score=78.77  Aligned_cols=45  Identities=31%  Similarity=0.333  Sum_probs=40.7

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++|++...+++.++.     +++|+|++|||||||++.|++.
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (241)
T PRK14250          3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRL   52 (241)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999988888888776     7999999999999999999864

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.46  E-value=1.7e-07  Score=81.90  Aligned_cols=45  Identities=29%  Similarity=0.377  Sum_probs=40.7

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus         2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl   51 (301)
T TIGR03522         2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGY   51 (301)
T ss_pred             EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999998899987665     8999999999999999999864

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.46  E-value=1.7e-07  Score=77.77  Aligned_cols=45  Identities=24%  Similarity=0.488  Sum_probs=38.6

Q ss_pred             eEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|++  ..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999965  4578887665     7999999999999999999864

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=2e-07  Score=78.73  Aligned_cols=45  Identities=20%  Similarity=0.288  Sum_probs=40.8

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus         2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (242)
T PRK11124          2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLL   51 (242)
T ss_pred             EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            68999999999988888887766     7999999999999999999864

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.45  E-value=2.3e-07  Score=79.82  Aligned_cols=49  Identities=18%  Similarity=0.390  Sum_probs=42.0

Q ss_pred             CCCceEEEecceeEeC--CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++.++++++|++++|+  +..++++.++.     +++|+|++|||||||++.|++.
T Consensus         3 ~~~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   58 (271)
T PRK13632          3 NKSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL   58 (271)
T ss_pred             CcceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4567899999999995  45788887665     8999999999999999999864

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.45  E-value=3e-07  Score=78.18  Aligned_cols=45  Identities=22%  Similarity=0.294  Sum_probs=40.8

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +++++++++++|++..++++.++.     +++|+|++|||||||++.|++
T Consensus         6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   55 (252)
T CHL00131          6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG   55 (252)
T ss_pred             ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcC
Confidence            389999999999988889887776     899999999999999999985

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.45  E-value=1.9e-07  Score=78.79  Aligned_cols=45  Identities=27%  Similarity=0.420  Sum_probs=40.3

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++.+++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   50 (240)
T PRK09493          1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL   50 (240)
T ss_pred             CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999988888887766     8999999999999999999864

>PLN03127 Elongation factor Tu; Provisional

Probab=98.45  E-value=5.2e-07  Score=82.86  Aligned_cols=21  Identities=29%  Similarity=0.314  Sum_probs=19.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .++++|..++|||||+++|++
T Consensus        63 ni~iiGhvd~GKSTL~~~L~~   83 (447)
T PLN03127         63 NVGTIGHVDHGKTTLTAAITK   83 (447)
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            589999999999999999973

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.45  E-value=1.7e-07  Score=73.96  Aligned_cols=47  Identities=26%  Similarity=0.312  Sum_probs=43.1

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .|.+++++++|.||+...-++.++.     +.+|+|-+|||||||+++|...
T Consensus         4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~r   55 (258)
T COG4107           4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGR   55 (258)
T ss_pred             CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcc
Confidence            5699999999999999999998886     8999999999999999999854

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.45  E-value=2.1e-07  Score=79.25  Aligned_cols=46  Identities=33%  Similarity=0.419  Sum_probs=41.4

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl   53 (251)
T PRK09544          3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGL   53 (251)
T ss_pred             cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            479999999999988888887766     7999999999999999999864

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.45  E-value=2.1e-07  Score=78.89  Aligned_cols=45  Identities=24%  Similarity=0.377  Sum_probs=40.4

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (247)
T TIGR00972         1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRM   50 (247)
T ss_pred             CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            57899999999988888887766     7999999999999999999864

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.45  E-value=1.9e-07  Score=78.38  Aligned_cols=44  Identities=23%  Similarity=0.351  Sum_probs=39.3

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (232)
T cd03218           1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGL   49 (232)
T ss_pred             CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999988889887765     8999999999999999999864

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.45  E-value=2.5e-07  Score=86.62  Aligned_cols=47  Identities=26%  Similarity=0.302  Sum_probs=42.1

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl   60 (510)
T PRK15439          9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGI   60 (510)
T ss_pred             CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3589999999999998889888776     7999999999999999999864

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=2.1e-07  Score=82.90  Aligned_cols=47  Identities=19%  Similarity=0.311  Sum_probs=41.8

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -+++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl   55 (351)
T PRK11432          4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGL   55 (351)
T ss_pred             CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence            3489999999999998888887666     7999999999999999999864

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.44  E-value=1.9e-07  Score=77.10  Aligned_cols=44  Identities=27%  Similarity=0.397  Sum_probs=39.3

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl   49 (208)
T cd03268           1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGL   49 (208)
T ss_pred             CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999988899888776     7999999999999999999854

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.44  E-value=3.3e-07  Score=77.94  Aligned_cols=45  Identities=24%  Similarity=0.394  Sum_probs=40.8

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +++++++++++|++..++++.++.     +++|+|++|||||||++.|.+
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   53 (252)
T PRK14239          4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINR   53 (252)
T ss_pred             ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhc
Confidence            489999999999988888887766     799999999999999999985

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.44  E-value=1.9e-07  Score=84.55  Aligned_cols=46  Identities=26%  Similarity=0.384  Sum_probs=42.0

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGl   52 (402)
T PRK09536          2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGT   52 (402)
T ss_pred             ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence            379999999999999999998776     7999999999999999999864

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.44  E-value=3.4e-07  Score=78.46  Aligned_cols=49  Identities=18%  Similarity=0.265  Sum_probs=43.0

Q ss_pred             CCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744            6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +...++++++||+++|++.+++++.++.     +++|+|++|||||||++.|..
T Consensus         5 ~~~~~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G   58 (264)
T PRK14243          5 NGTETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNR   58 (264)
T ss_pred             CCCceEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            3445689999999999988888887766     799999999999999999984

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.44  E-value=1.6e-07  Score=78.18  Aligned_cols=44  Identities=25%  Similarity=0.363  Sum_probs=38.8

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (222)
T cd03224           1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGL   49 (222)
T ss_pred             CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999988888887665     8999999999999999999854

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.44  E-value=2.5e-07  Score=79.07  Aligned_cols=45  Identities=31%  Similarity=0.341  Sum_probs=40.8

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   51 (258)
T PRK13548          2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGE   51 (258)
T ss_pred             eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            58899999999998899988766     7999999999999999999864

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.44  E-value=2e-07  Score=77.17  Aligned_cols=44  Identities=30%  Similarity=0.460  Sum_probs=39.2

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++.+++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03301           1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGL   49 (213)
T ss_pred             CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999988888887765     7999999999999999999864

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.43  E-value=2e-07  Score=78.02  Aligned_cols=44  Identities=25%  Similarity=0.443  Sum_probs=39.1

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   49 (227)
T cd03260           1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRL   49 (227)
T ss_pred             CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            4689999999988888887766     7999999999999999999853

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=3.3e-07  Score=78.03  Aligned_cols=46  Identities=24%  Similarity=0.369  Sum_probs=41.5

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++++++++++|++..++++.++.     +++|+|++|||||||++.|.+
T Consensus         4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14261          4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNR   54 (253)
T ss_pred             cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3589999999999998899888765     899999999999999999984

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.43  E-value=3.5e-07  Score=78.78  Aligned_cols=50  Identities=26%  Similarity=0.307  Sum_probs=43.6

Q ss_pred             CCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++.++++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus        20 ~~~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl   74 (272)
T PRK14236         20 SDEQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRM   74 (272)
T ss_pred             CCCCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3457799999999999988888887665     8999999999999999999854

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.43  E-value=2.2e-07  Score=77.34  Aligned_cols=44  Identities=25%  Similarity=0.422  Sum_probs=38.8

Q ss_pred             EEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++  .+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (220)
T cd03263           1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE   51 (220)
T ss_pred             CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999987  7888887665     8999999999999999999864

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK10218 GTP-binding protein; Provisional

Probab=98.43  E-value=3.7e-06  Score=79.86  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.5

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+.-|+|+|..++|||||+++|+.
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~   27 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQ   27 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHH
Confidence            356789999999999999999985

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.43  E-value=2e-07  Score=74.00  Aligned_cols=44  Identities=32%  Similarity=0.411  Sum_probs=38.9

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++.+++++.++.     +++|+|++|+|||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   49 (163)
T cd03216           1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGL   49 (163)
T ss_pred             CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999988888887665     8999999999999999999854

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=3.3e-07  Score=78.00  Aligned_cols=46  Identities=24%  Similarity=0.268  Sum_probs=41.5

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++++++++++|++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   53 (253)
T PRK14267          3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRL   53 (253)
T ss_pred             ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            379999999999988889988776     8999999999999999999854

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.43  E-value=1.9e-07  Score=83.28  Aligned_cols=46  Identities=26%  Similarity=0.349  Sum_probs=41.0

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl   53 (353)
T TIGR03265         3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL   53 (353)
T ss_pred             cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            469999999999998888877665     7999999999999999999864

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=5.3e-07  Score=76.62  Aligned_cols=46  Identities=20%  Similarity=0.299  Sum_probs=41.2

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++|++.+++++.++.     +++|+|++|||||||++.|++.
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   53 (251)
T PRK14251          3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence            479999999999988888887665     7999999999999999999854

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.43  E-value=3.4e-07  Score=77.85  Aligned_cols=47  Identities=34%  Similarity=0.451  Sum_probs=42.2

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++.++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   53 (252)
T PRK14256          2 NNKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRM   53 (252)
T ss_pred             CcEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4679999999999988889988776     7999999999999999999854

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.42  E-value=2.5e-07  Score=76.55  Aligned_cols=44  Identities=32%  Similarity=0.404  Sum_probs=39.3

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++...+++.++.     +++|+|++|||||||++.|++.
T Consensus         1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~   49 (213)
T cd03262           1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL   49 (213)
T ss_pred             CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999988888887776     7999999999999999999864

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.42  E-value=1.8e-07  Score=77.07  Aligned_cols=43  Identities=30%  Similarity=0.494  Sum_probs=37.5

Q ss_pred             EEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           13 RIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        13 ~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++|++ ..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226           1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999988 7888887665     7999999999999999999854

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.42  E-value=9e-07  Score=71.72  Aligned_cols=139  Identities=22%  Similarity=0.269  Sum_probs=71.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      +-|.++|+.+||||+|+-.|+...  .+..+.+.++.. ..     .+.+. ..  ..++|+ ||-      ..+...+.
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs--~~~TvtSiepn~-a~-----~r~gs-~~--~~LVD~-PGH------~rlR~kl~  100 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGS--HRGTVTSIEPNE-AT-----YRLGS-EN--VTLVDL-PGH------SRLRRKLL  100 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCC--ccCeeeeeccce-ee-----EeecC-cc--eEEEeC-CCc------HHHHHHHH
Confidence            578899999999999999998652  222444444432 10     11111 11  257888 442      23344444


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      +.......+..|++.++....+.+..+.. ++.+.+..........+.+|+-||.|+..+...+...+.+++.|..++
T Consensus       101 e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr  178 (238)
T KOG0090|consen  101 EYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLR  178 (238)
T ss_pred             HHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHH
Confidence            44432345667777555555444432211 111222111112223558889999999877533223344444444443

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.42  E-value=2.2e-07  Score=78.21  Aligned_cols=44  Identities=34%  Similarity=0.394  Sum_probs=38.9

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   49 (236)
T cd03219           1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGF   49 (236)
T ss_pred             CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            4689999999988888887766     7999999999999999999854

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.42  E-value=3.4e-07  Score=78.64  Aligned_cols=49  Identities=22%  Similarity=0.306  Sum_probs=43.1

Q ss_pred             CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -+.+.|++++|+++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus        15 ~~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   68 (267)
T PRK14235         15 ATEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRM   68 (267)
T ss_pred             CCCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            345689999999999988888887766     7999999999999999999854

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=3.3e-07  Score=77.82  Aligned_cols=45  Identities=20%  Similarity=0.336  Sum_probs=40.5

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++++++++++.|++..++++.++.     +++|+|++|||||||++.|.+
T Consensus         2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14245          2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNR   51 (250)
T ss_pred             cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence            689999999999988888887665     899999999999999999974

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.42  E-value=3.4e-07  Score=78.18  Aligned_cols=46  Identities=24%  Similarity=0.359  Sum_probs=41.3

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++|++++|++.++++++++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl   53 (258)
T PRK14241          3 KRIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM   53 (258)
T ss_pred             ccEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            379999999999988889887665     7999999999999999999854

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.42  E-value=3.2e-07  Score=81.16  Aligned_cols=51  Identities=22%  Similarity=0.283  Sum_probs=43.6

Q ss_pred             CCCCCceEEEecceeEeCC-------------cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            5 EEDPPLAVRIDETTHEFSN-------------SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++..+++++++||+++|+.             .++++++++.     +++|+|.+|||||||++.|++.
T Consensus         2 ~~~~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl   70 (331)
T PRK15079          2 TEGKKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGL   70 (331)
T ss_pred             CCCCCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            5677899999999999963             3567777666     7999999999999999999864

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.42  E-value=2.4e-07  Score=82.60  Aligned_cols=46  Identities=24%  Similarity=0.447  Sum_probs=41.2

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl   51 (353)
T PRK10851          1 MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGL   51 (353)
T ss_pred             CEEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999998889887766     7999999999999999999864

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=98.42  E-value=8.5e-07  Score=68.82  Aligned_cols=152  Identities=20%  Similarity=0.250  Sum_probs=78.3

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      +.|.|..||||||+++++.    +..+..+++.+|..  +.  .+...  +.. -.+.|+ +|-  .+    +.+.=+..
T Consensus        19 iLiLGLdNsGKTti~~kl~----~~~~~~i~pt~gf~--Ik--tl~~~--~~~-L~iwDv-GGq--~~----lr~~W~nY   80 (185)
T KOG0073|consen   19 ILILGLDNSGKTTIVKKLL----GEDTDTISPTLGFQ--IK--TLEYK--GYT-LNIWDV-GGQ--KT----LRSYWKNY   80 (185)
T ss_pred             EEEEecCCCCchhHHHHhc----CCCccccCCcccee--eE--EEEec--ceE-EEEEEc-CCc--ch----hHHHHHHh
Confidence            5689999999999999999    54455556655531  11  11111  111 245666 442  11    22222222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhh-cccccc-cceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHH--HHhhcC
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLW-LDDQLE-SAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKE--IHEINS  190 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~-~~~~l~-~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~--l~~~~p  190 (263)
                      .   +..|.++. +.+.+|+..+.+... +...+. +....   .+.+|+.||.|+..+-.    .+.+...  |..+.+
T Consensus        81 f---estdglIw-vvDssD~~r~~e~~~~L~~lL~eerlaG---~~~Lvlank~dl~~~l~----~~~i~~~~~L~~l~k  149 (185)
T KOG0073|consen   81 F---ESTDGLIW-VVDSSDRMRMQECKQELTELLVEERLAG---APLLVLANKQDLPGALS----LEEISKALDLEELAK  149 (185)
T ss_pred             h---hccCeEEE-EEECchHHHHHHHHHHHHHHHhhhhhcC---CceEEEEecCcCccccC----HHHHHHhhCHHHhcc
Confidence            2   24455544 233466655543211 111111 11111   23889999999985432    2344322  333433


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      ..           .-+++.+||.+|+++.+-.+|+.
T Consensus       150 s~-----------~~~l~~cs~~tge~l~~gidWL~  174 (185)
T KOG0073|consen  150 SH-----------HWRLVKCSAVTGEDLLEGIDWLC  174 (185)
T ss_pred             cc-----------CceEEEEeccccccHHHHHHHHH
Confidence            22           12578899999976655555554

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=6e-07  Score=77.49  Aligned_cols=47  Identities=30%  Similarity=0.347  Sum_probs=42.5

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++.++|++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus        19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl   70 (276)
T PRK14271         19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRM   70 (276)
T ss_pred             CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            4589999999999998899888776     7999999999999999999864

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.41  E-value=3.7e-07  Score=78.13  Aligned_cols=47  Identities=21%  Similarity=0.369  Sum_probs=42.4

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++|+++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   53 (262)
T PRK09984          2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL   53 (262)
T ss_pred             CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            4589999999999998889888776     8999999999999999999864

>PRK10908 cell division protein FtsE; Provisional

Probab=98.41  E-value=2.6e-07  Score=77.07  Aligned_cols=45  Identities=27%  Similarity=0.462  Sum_probs=39.5

Q ss_pred             eEEEecceeEe-CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++| ++...+++.++.     +++|+|++|||||||++.|...
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   51 (222)
T PRK10908          1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGI   51 (222)
T ss_pred             CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999 667788887665     7999999999999999999864

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.41  E-value=2.1e-07  Score=77.50  Aligned_cols=44  Identities=23%  Similarity=0.410  Sum_probs=38.3

Q ss_pred             EEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++    ..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl   53 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGL   53 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999987    6788887665     8999999999999999999854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=2.4e-07  Score=88.87  Aligned_cols=45  Identities=20%  Similarity=0.168  Sum_probs=41.5

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +|.++||+++||+..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~   50 (638)
T PRK10636          1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNE   50 (638)
T ss_pred             CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            48899999999999999998876     7999999999999999999875

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=3.8e-07  Score=77.47  Aligned_cols=45  Identities=27%  Similarity=0.364  Sum_probs=40.7

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14247          3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL   52 (250)
T ss_pred             eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            68999999999988888887665     7999999999999999999854

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=3.4e-07  Score=77.65  Aligned_cols=46  Identities=17%  Similarity=0.277  Sum_probs=41.1

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++|+++.|++...+++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269          1 MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             CceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            468999999999988888887776     7999999999999999999853

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.41  E-value=2.4e-07  Score=74.61  Aligned_cols=44  Identities=25%  Similarity=0.431  Sum_probs=38.7

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++.+++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229           1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999988888887665     7999999999999999999854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.41  E-value=2.2e-07  Score=76.79  Aligned_cols=44  Identities=30%  Similarity=0.444  Sum_probs=38.8

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~   49 (210)
T cd03269           1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGI   49 (210)
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999988888887665     7999999999999999999854

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.41  E-value=2.6e-07  Score=77.44  Aligned_cols=44  Identities=27%  Similarity=0.389  Sum_probs=39.3

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++.|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (230)
T TIGR03410         1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGL   49 (230)
T ss_pred             CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999988888887776     8999999999999999999864

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.40  E-value=2.6e-07  Score=77.94  Aligned_cols=44  Identities=27%  Similarity=0.447  Sum_probs=38.9

Q ss_pred             EEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++ .+++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (241)
T cd03256           1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGL   50 (241)
T ss_pred             CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999987 7888887766     8999999999999999999864

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=1.5e-06  Score=69.47  Aligned_cols=159  Identities=16%  Similarity=0.218  Sum_probs=82.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCC-cceeeeeeecCcceEeecchhHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGG-ALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~-~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      --++++|-.++||||||++.+...       ..+.++.|+++|...-...-.+ ..--++.|+++       .+.|...+
T Consensus        23 ~KlVflGdqsVGKTslItRf~yd~-------fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAG-------QERFrsli   88 (221)
T KOG0094|consen   23 YKLVFLGDQSVGKTSLITRFMYDK-------FDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAG-------QERFRSLI   88 (221)
T ss_pred             EEEEEEccCccchHHHHHHHHHhh-------hcccccceeeeEEEEEEEEEcCcEEEEEEEeccc-------HHHHhhhh
Confidence            456799999999999999998531       1222333455543222111111 11125677643       23344444


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      -...+   ...+++| +-++.+...+.++ -|+++.....  ...-+-.++|-||.||++..+.  ..++=...-++++-
T Consensus        89 psY~R---ds~vavi-VyDit~~~Sfe~t~kWi~dv~~e~--gs~~viI~LVGnKtDL~dkrqv--s~eEg~~kAkel~a  160 (221)
T KOG0094|consen   89 PSYIR---DSSVAVI-VYDITDRNSFENTSKWIEDVRRER--GSDDVIIFLVGNKTDLSDKRQV--SIEEGERKAKELNA  160 (221)
T ss_pred             hhhcc---CCeEEEE-EEeccccchHHHHHHHHHHHHhcc--CCCceEEEEEcccccccchhhh--hHHHHHHHHHHhCc
Confidence            44432   3444444 2223343333221 1223322221  1111236678899999987532  22222223333322


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                                     ..+.+||+.|.|+.++...+...
T Consensus       161 ---------------~f~etsak~g~NVk~lFrrIaa~  183 (221)
T KOG0094|consen  161 ---------------EFIETSAKAGENVKQLFRRIAAA  183 (221)
T ss_pred             ---------------EEEEecccCCCCHHHHHHHHHHh
Confidence                           34678999999999888777643

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.40  E-value=3.1e-07  Score=86.93  Aligned_cols=47  Identities=21%  Similarity=0.297  Sum_probs=42.9

Q ss_pred             CceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++|++++|+ +..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~   56 (556)
T PRK11819          4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV   56 (556)
T ss_pred             cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            67999999999998 78899998776     7999999999999999999865

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.40  E-value=3.4e-07  Score=78.58  Aligned_cols=46  Identities=22%  Similarity=0.268  Sum_probs=39.4

Q ss_pred             ceEEEecceeEeCC---------cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSN---------SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~---------~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++||+++|++         .+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl   62 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGM   62 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            47999999999963         3577877665     8999999999999999999864

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.40  E-value=4.4e-07  Score=77.14  Aligned_cols=47  Identities=17%  Similarity=0.304  Sum_probs=42.1

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++++++|++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus         2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   53 (251)
T PRK14270          2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            4789999999999988888887665     8999999999999999999854

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.40  E-value=9.1e-06  Score=68.55  Aligned_cols=21  Identities=33%  Similarity=0.392  Sum_probs=19.1

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|.+|+|||||+++|+..
T Consensus         2 i~i~G~~~~GKTtL~~~ll~~   22 (237)
T cd04168           2 IGILAHVDAGKTTLTESLLYT   22 (237)
T ss_pred             EEEEcCCCCCHHHHHHHHHHH
Confidence            689999999999999999853

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.40  E-value=5e-07  Score=70.50  Aligned_cols=59  Identities=20%  Similarity=0.363  Sum_probs=46.4

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHH--HccCCCCeEEEEecCC
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYI--LNGKHGKRIAVILNEF   68 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l--~~~~~~~~~~ii~~~~   68 (263)
                      +.|+++++++.||...++-++.+.     .+++.||+|||||||++.|  ++-.......|..+.|
T Consensus         1 msirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~f   66 (242)
T COG4161           1 MSIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHF   66 (242)
T ss_pred             CceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccc
Confidence            368999999999999999887665     7899999999999999987  3333445555555554

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.40  E-value=2.6e-07  Score=75.72  Aligned_cols=44  Identities=18%  Similarity=0.161  Sum_probs=39.4

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (198)
T TIGR01189         1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGL   49 (198)
T ss_pred             CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999998889887766     7999999999999999999864

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=4.1e-07  Score=77.28  Aligned_cols=44  Identities=25%  Similarity=0.420  Sum_probs=40.3

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++++++++++|+++.++++.++.     +++|+|++|||||||++.|.+
T Consensus         3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14262          3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINR   51 (250)
T ss_pred             eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhc
Confidence            78999999999988888887765     899999999999999999985

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=3.3e-07  Score=78.29  Aligned_cols=48  Identities=21%  Similarity=0.196  Sum_probs=43.5

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .-+++.+++++++||+..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         7 ~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~   59 (257)
T PRK14246          7 AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRL   59 (257)
T ss_pred             hhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35779999999999999999998776     8999999999999999999864

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.39  E-value=4.3e-06  Score=73.44  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=31.9

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      -.+++++|++||||||++.+|...  ..+.++.++..|..
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~  153 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF  153 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence            358999999999999999999764  45788999988864

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.39  E-value=3.5e-07  Score=78.01  Aligned_cols=47  Identities=23%  Similarity=0.246  Sum_probs=42.1

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+.++++++++.|++...+++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   54 (257)
T PRK10619          3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFL   54 (257)
T ss_pred             CccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4569999999999988888888776     8999999999999999999865

>TIGR00484 EF-G translation elongation factor EF-G

Probab=98.39  E-value=2e-06  Score=83.40  Aligned_cols=24  Identities=29%  Similarity=0.286  Sum_probs=21.7

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++.-|+|+|.+|+|||||+++|+.
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~   32 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILF   32 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHH
Confidence            466899999999999999999974

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.39  E-value=5e-07  Score=78.33  Aligned_cols=48  Identities=27%  Similarity=0.345  Sum_probs=43.0

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.+++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus        36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl   88 (285)
T PRK14254         36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRM   88 (285)
T ss_pred             CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            56789999999999988888887765     7999999999999999999854

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.39  E-value=4.3e-06  Score=79.34  Aligned_cols=185  Identities=18%  Similarity=0.228  Sum_probs=88.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHccC----CCCeEEEEecC-------CCcccccchhhhhcCCCCcceeeeeeecCcceEee
Q 024744           34 VTVITGFLGAGKSTLVNYILNGK----HGKRIAVILNE-------FGEEIGVERAMINEGEGGALVEEWVELANGCICCT  102 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~----~~~~~~ii~~~-------~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~  102 (263)
                      -|+|+|..++|||||+++|+...    ...++.--.-|       -|.|+......+.+  .+.. ..++|+ +|.    
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~--~~~k-inlIDT-PGh----   74 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY--NGTK-INIVDT-PGH----   74 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE--CCEE-EEEEEC-CCH----
Confidence            57999999999999999998531    11111100001       11111111111111  1111 246777 442    


Q ss_pred             cchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHH
Q 024744          103 VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELE  182 (263)
Q Consensus       103 ~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~  182 (263)
                        .++...+...+.   .+|.+++-.+....+.+.....+ . .... ..    ++.++++||+|+.+... ....+++.
T Consensus        75 --~DF~~ev~~~l~---~aD~alLVVDa~~G~~~qT~~~l-~-~a~~-~~----ip~IVviNKiD~~~a~~-~~v~~ei~  141 (594)
T TIGR01394        75 --ADFGGEVERVLG---MVDGVLLLVDASEGPMPQTRFVL-K-KALE-LG----LKPIVVINKIDRPSARP-DEVVDEVF  141 (594)
T ss_pred             --HHHHHHHHHHHH---hCCEEEEEEeCCCCCcHHHHHHH-H-HHHH-CC----CCEEEEEECCCCCCcCH-HHHHHHHH
Confidence              445555554443   56777774444333332211111 1 1111 12    34789999999875421 11233444


Q ss_pred             HHHHhhcCCCeEEEeecCCCChhhhhccccCCcc----------hhhhhhhhhhhhccCCCCCCCCCCEEEEEEEc
Q 024744          183 KEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT----------HVTRLEGLLEEHQYKSSQNLHDNNVRTLSICE  248 (263)
Q Consensus       183 ~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~----------~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~  248 (263)
                      +.+..+...       ..... -+++.+||++|.          |+..|.+.+......+ ....+.++...++..
T Consensus       142 ~l~~~~g~~-------~e~l~-~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P-~~~~~~pl~~~V~~i  208 (594)
T TIGR01394       142 DLFAELGAD-------DEQLD-FPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP-KGDLDEPLQMLVTNL  208 (594)
T ss_pred             HHHHhhccc-------ccccc-CcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC-CCCCCCCEEEEEEEE
Confidence            444332210       01111 146788999985          6777877766543322 122344565555543

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK00007 elongation factor G; Reviewed

Probab=98.39  E-value=2.1e-06  Score=83.24  Aligned_cols=24  Identities=29%  Similarity=0.241  Sum_probs=21.6

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++.-|+|+|.+|+|||||+++|+.
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~   32 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILF   32 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHH
Confidence            466899999999999999999974

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.38  E-value=2.7e-07  Score=78.45  Aligned_cols=44  Identities=25%  Similarity=0.384  Sum_probs=39.3

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      |++++|+++|++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (252)
T TIGR03005         1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTL   49 (252)
T ss_pred             CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999988888888775     7999999999999999999864

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.38  E-value=2.8e-07  Score=76.15  Aligned_cols=43  Identities=26%  Similarity=0.416  Sum_probs=37.3

Q ss_pred             EEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           13 RIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        13 ~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++|++  ..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225           1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            36789999987  7788887665     7999999999999999999854

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.38  E-value=3.6e-07  Score=85.42  Aligned_cols=46  Identities=20%  Similarity=0.307  Sum_probs=41.7

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~   53 (501)
T PRK10762          3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGI   53 (501)
T ss_pred             ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            479999999999988899988775     7999999999999999999864

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.38  E-value=2.4e-07  Score=76.75  Aligned_cols=43  Identities=35%  Similarity=0.427  Sum_probs=37.6

Q ss_pred             EEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           13 RIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   48 (213)
T cd03235           1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGL   48 (213)
T ss_pred             CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            367999999988888887665     7999999999999999999854

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.38  E-value=3.4e-07  Score=76.24  Aligned_cols=45  Identities=22%  Similarity=0.362  Sum_probs=38.5

Q ss_pred             eEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++    .+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~   54 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGL   54 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999975    4578877665     8999999999999999999854

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.38  E-value=3.7e-07  Score=75.02  Aligned_cols=44  Identities=27%  Similarity=0.265  Sum_probs=39.3

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++...+++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (201)
T cd03231           1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL   49 (201)
T ss_pred             CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999998889887665     7999999999999999999865

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=3.9e-07  Score=79.05  Aligned_cols=45  Identities=22%  Similarity=0.366  Sum_probs=39.4

Q ss_pred             eEEEecceeEeCC-----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++     ..++++.++.     +++|+|++|||||||++.|++.
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl   56 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNAL   56 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999984     3588887766     8999999999999999999864

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.38  E-value=2.9e-07  Score=78.65  Aligned_cols=45  Identities=33%  Similarity=0.538  Sum_probs=41.1

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++|++.++++.|++..+++++++.     .+++.|++|||||||++.|.+
T Consensus         1 m~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAG   50 (345)
T COG1118           1 MSIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAG   50 (345)
T ss_pred             CceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhC
Confidence            468999999999999999988776     799999999999999999975

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=3e-07  Score=81.81  Aligned_cols=45  Identities=29%  Similarity=0.389  Sum_probs=39.2

Q ss_pred             eEEEecceeEeC----CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFS----NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~----~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|+    +..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl   54 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLL   54 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            488999999998    35788887665     7999999999999999999864

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=5.4e-07  Score=79.36  Aligned_cols=49  Identities=24%  Similarity=0.291  Sum_probs=41.8

Q ss_pred             CCCceEEEecceeEeCC-----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...++|++++++++|++     .++++++++.     +++|+|++|||||||++.|.+.
T Consensus        17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl   75 (320)
T PRK13631         17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL   75 (320)
T ss_pred             CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            44578999999999975     3588887766     8999999999999999999864

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.37  E-value=5.1e-07  Score=78.30  Aligned_cols=48  Identities=25%  Similarity=0.234  Sum_probs=42.7

Q ss_pred             CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+.+.+++++++++|++..++++.++.     +++|+|++|||||||++.|.+
T Consensus        35 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~G   87 (286)
T PRK14275         35 GGKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINR   87 (286)
T ss_pred             CCceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            367789999999999988888887665     799999999999999999985

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.37  E-value=3.7e-07  Score=85.46  Aligned_cols=46  Identities=24%  Similarity=0.312  Sum_probs=41.9

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl   54 (510)
T PRK09700          4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI   54 (510)
T ss_pred             ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            589999999999988889988776     8999999999999999999864

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.37  E-value=4.4e-07  Score=78.13  Aligned_cols=45  Identities=29%  Similarity=0.296  Sum_probs=40.7

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~   50 (272)
T PRK13547          1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGD   50 (272)
T ss_pred             CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999998899988765     8999999999999999999864

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.37  E-value=2.5e-07  Score=73.48  Aligned_cols=45  Identities=31%  Similarity=0.411  Sum_probs=38.0

Q ss_pred             eEEEecceeEeCCcccCCCcceE---EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG---VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~---vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++.+++|.++|+..+--=+..++   +++|+|++|||||||+|-+.+-
T Consensus         1 ~l~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF   48 (231)
T COG3840           1 MLALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGF   48 (231)
T ss_pred             CccccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhc
Confidence            46789999999997766555555   8999999999999999999864

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=98.37  E-value=5.4e-07  Score=81.32  Aligned_cols=141  Identities=17%  Similarity=0.183  Sum_probs=68.3

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhH--
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL--  107 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~--  107 (263)
                      ...+.++|.|+||+|||||+|.++.    ..+.|-...|.| ..+-.+-...   ..+-.+++++ ||.+-.-+.+.-  
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vtr----advevqpYaFTT-ksL~vGH~dy---kYlrwQViDT-PGILD~plEdrN~I  236 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVTR----ADDEVQPYAFTT-KLLLVGHLDY---KYLRWQVIDT-PGILDRPEEDRNII  236 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhcccccc----cccccCCccccc-chhhhhhhhh---heeeeeecCC-ccccCcchhhhhHH
Confidence            4556889999999999999999984    333333333332 3221111111   0111356666 665432221111  


Q ss_pred             -HHHHHHHHHhccCCcE-EEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHH
Q 024744          108 -VQALEQLVQRKERLDH-ILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEI  185 (263)
Q Consensus       108 -~~~l~~~~~~~~~~d~-ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l  185 (263)
                       ...+-.++.  -.+.+ -+.+.++.+.-+.-.+. -+...+...|.   ..+.++|+||+|+...+...+.-+++.+.+
T Consensus       237 EmqsITALAH--LraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFa---NK~~IlvlNK~D~m~~edL~~~~~~ll~~~  310 (620)
T KOG1490|consen  237 EMQIITALAH--LRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFA---NKVTILVLNKIDAMRPEDLDQKNQELLQTI  310 (620)
T ss_pred             HHHHHHHHHH--hhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhc---CCceEEEeecccccCccccCHHHHHHHHHH
Confidence             112222222  12222 24556665443322221 11223333322   144899999999998875543333343333

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.37  E-value=5.9e-07  Score=76.37  Aligned_cols=46  Identities=22%  Similarity=0.325  Sum_probs=41.5

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl   53 (251)
T PRK14249          3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRM   53 (251)
T ss_pred             ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            479999999999988888888776     8999999999999999999864

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=3.5e-07  Score=81.71  Aligned_cols=45  Identities=18%  Similarity=0.383  Sum_probs=40.3

Q ss_pred             eEEEecceeEe-CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++| ++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl   53 (356)
T PRK11650          3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL   53 (356)
T ss_pred             EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCC
Confidence            58999999999 888888887665     7999999999999999999864

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.37  E-value=3.3e-07  Score=71.28  Aligned_cols=43  Identities=26%  Similarity=0.394  Sum_probs=37.8

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +++++++++|++.+.+++.++.     +++|+|++|+|||||++.|.+
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G   48 (144)
T cd03221           1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAG   48 (144)
T ss_pred             CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence            4688999999887788887665     799999999999999999984

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.37  E-value=3.8e-07  Score=81.89  Aligned_cols=45  Identities=27%  Similarity=0.418  Sum_probs=40.5

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl   52 (369)
T PRK11000          3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL   52 (369)
T ss_pred             EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            58999999999998888887665     7999999999999999999864

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=5.3e-07  Score=77.95  Aligned_cols=46  Identities=26%  Similarity=0.398  Sum_probs=40.2

Q ss_pred             ceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++|+++|++  ..++++.++.     +++|+|++|||||||++.|++.
T Consensus         4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~   56 (279)
T PRK13635          4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGL   56 (279)
T ss_pred             ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            58999999999975  4688887765     8999999999999999999864

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.37  E-value=3.5e-07  Score=81.18  Aligned_cols=45  Identities=27%  Similarity=0.371  Sum_probs=38.7

Q ss_pred             eEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +|++++++++|++    .+++++.++.     +++|+|++|||||||++.|...
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl   54 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL   54 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999963    4688887765     8999999999999999999764

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=4.2e-07  Score=78.32  Aligned_cols=45  Identities=20%  Similarity=0.293  Sum_probs=39.4

Q ss_pred             eEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|+ +..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (274)
T PRK13644          1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGL   51 (274)
T ss_pred             CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            478999999995 56788888776     8999999999999999999864

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=5e-07  Score=78.37  Aligned_cols=45  Identities=29%  Similarity=0.414  Sum_probs=39.3

Q ss_pred             eEEEecceeEeCC-----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++     .+++++.++.     +++|+|++|||||||++.|++.
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl   56 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINAL   56 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999964     3588888776     7999999999999999999864

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.36  E-value=4.1e-07  Score=76.82  Aligned_cols=44  Identities=25%  Similarity=0.329  Sum_probs=39.1

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978         1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999988888887765     7999999999999999999854

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.36  E-value=6.4e-07  Score=76.80  Aligned_cols=50  Identities=16%  Similarity=0.239  Sum_probs=44.0

Q ss_pred             CCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+..++|++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus        11 ~~~~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   65 (265)
T PRK14252         11 SPTQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRM   65 (265)
T ss_pred             cCCCceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            3457889999999999988889887766     8999999999999999999854

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.36  E-value=3.5e-07  Score=75.66  Aligned_cols=44  Identities=25%  Similarity=0.383  Sum_probs=38.4

Q ss_pred             EEEecceeEeCCcccCCCcceE----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++...+++.++.    +++|+|++|||||||++.|.+.
T Consensus         1 i~~~~~~~~~~~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264           1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             CEEEEEEEEECCEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999988888886554    7999999999999999999864

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=4.9e-07  Score=78.53  Aligned_cols=47  Identities=21%  Similarity=0.363  Sum_probs=40.2

Q ss_pred             CceEEEecceeEeCCc-----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNS-----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~-----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...++++|++++|++.     .++++.++.     +++|+|++|||||||++.|++.
T Consensus         4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   60 (289)
T PRK13645          4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGL   60 (289)
T ss_pred             cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3568999999999864     378887665     7999999999999999999864

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.36  E-value=4.8e-07  Score=84.29  Aligned_cols=45  Identities=22%  Similarity=0.278  Sum_probs=41.1

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~   52 (490)
T PRK10938          3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGE   52 (490)
T ss_pred             eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            69999999999988899988775     7999999999999999999864

>PRK12739 elongation factor G; Reviewed

Probab=98.36  E-value=2.6e-06  Score=82.50  Aligned_cols=24  Identities=29%  Similarity=0.284  Sum_probs=21.7

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++.-++|+|.+|+|||||+++|+.
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~   30 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILY   30 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHH
Confidence            566899999999999999999975

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.35  E-value=9.7e-07  Score=72.80  Aligned_cols=47  Identities=23%  Similarity=0.258  Sum_probs=40.7

Q ss_pred             CceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+.+++++++++|++  ..++++.++.     +++|+|++|+|||||++.|++.
T Consensus         4 ~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl   57 (207)
T cd03369           4 HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRF   57 (207)
T ss_pred             CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            467999999999986  4688887766     7999999999999999999853

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.35  E-value=3.8e-07  Score=75.08  Aligned_cols=42  Identities=31%  Similarity=0.387  Sum_probs=37.2

Q ss_pred             EecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           14 IDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++|+++.|++++++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   47 (206)
T TIGR03608         1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLL   47 (206)
T ss_pred             CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999988889887766     7999999999999999999854

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=5.6e-07  Score=77.81  Aligned_cols=46  Identities=24%  Similarity=0.313  Sum_probs=40.4

Q ss_pred             ceEEEecceeEeCC------cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSN------SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~------~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++|++      ..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   59 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNAL   59 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            58999999999974      4588888775     8999999999999999999864

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.34  E-value=7.4e-07  Score=75.64  Aligned_cols=45  Identities=22%  Similarity=0.327  Sum_probs=41.0

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (249)
T PRK14253          3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRM   52 (249)
T ss_pred             eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            68999999999988899988776     8999999999999999999854

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=5.8e-07  Score=80.82  Aligned_cols=48  Identities=31%  Similarity=0.416  Sum_probs=42.0

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+++++++++++|++..++++.++.     +++|+|++|||||||++.|...
T Consensus        16 ~~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl   68 (377)
T PRK11607         16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGF   68 (377)
T ss_pred             CCceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            35579999999999988888877665     7999999999999999999864

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.34  E-value=4.8e-07  Score=77.90  Aligned_cols=45  Identities=22%  Similarity=0.386  Sum_probs=39.6

Q ss_pred             eEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|+ +..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   56 (272)
T PRK15056          6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGF   56 (272)
T ss_pred             eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            689999999995 57788887766     7999999999999999999864

>PRK14974 cell division protein FtsY; Provisional

Probab=98.34  E-value=5.6e-06  Score=73.09  Aligned_cols=37  Identities=24%  Similarity=0.318  Sum_probs=30.1

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~   68 (263)
                      ..+++++|++|+||||++.+|...  ..|.+++++..|.
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt  178 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT  178 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence            358999999999999999998753  3467888887764

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.34  E-value=2.7e-07  Score=74.46  Aligned_cols=44  Identities=30%  Similarity=0.428  Sum_probs=39.3

Q ss_pred             eEEEecceeEeCCcc-cCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           11 AVRIDETTHEFSNSH-ENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~-~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      |+++.+++|+|++.. ++++.++-     ++++.|++||||||+++.|..
T Consensus         1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiat   50 (245)
T COG4555           1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT   50 (245)
T ss_pred             CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHH
Confidence            578999999999955 88888776     899999999999999999974

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=98.34  E-value=3.4e-07  Score=68.34  Aligned_cols=21  Identities=33%  Similarity=0.604  Sum_probs=19.2

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      |+|+|.+|||||||+++|+..
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~   22 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGG   22 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            679999999999999999954

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=5.2e-07  Score=77.96  Aligned_cols=45  Identities=20%  Similarity=0.343  Sum_probs=38.7

Q ss_pred             eEEEecceeEeCC-----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++|++     .+++++.++.     +++|+|++|||||||++.|++.
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl   56 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGL   56 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999975     3578877665     7999999999999999999864

>cd01858 NGP_1 NGP-1

Probab=98.34  E-value=5.7e-07  Score=70.90  Aligned_cols=37  Identities=22%  Similarity=0.296  Sum_probs=30.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCccccc
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGV   74 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~   74 (263)
                      .++++|+||+|||||+|+|.    +.+...+.+.+|+|...
T Consensus       104 ~v~~~G~~nvGKStliN~l~----~~~~~~~~~~~g~T~~~  140 (157)
T cd01858         104 SVGFIGYPNVGKSSIINTLR----SKKVCKVAPIPGETKVW  140 (157)
T ss_pred             EEEEEeCCCCChHHHHHHHh----cCCceeeCCCCCeeEeE
Confidence            56799999999999999999    66667788888876543

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.34  E-value=5.6e-07  Score=75.13  Aligned_cols=45  Identities=24%  Similarity=0.392  Sum_probs=38.5

Q ss_pred             eEEEecceeEeCC-------cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN-------SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~-------~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|++       ..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   57 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYAN   57 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999963       3578887666     7999999999999999999864

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.33  E-value=4.8e-07  Score=75.50  Aligned_cols=44  Identities=27%  Similarity=0.369  Sum_probs=39.1

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++..++++.++.     +++|+|++|+|||||++.|++.
T Consensus         1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   49 (223)
T TIGR03740         1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGI   49 (223)
T ss_pred             CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999988888887766     8999999999999999999854

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.33  E-value=7.1e-07  Score=83.53  Aligned_cols=46  Identities=28%  Similarity=0.404  Sum_probs=41.9

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (506)
T PRK13549          4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGV   54 (506)
T ss_pred             ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            589999999999988899988776     7999999999999999999864

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.33  E-value=9.8e-07  Score=74.78  Aligned_cols=45  Identities=22%  Similarity=0.259  Sum_probs=40.3

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580          1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            47899999999988888887766     7999999999999999999854

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.33  E-value=4.9e-07  Score=76.42  Aligned_cols=44  Identities=18%  Similarity=0.369  Sum_probs=38.7

Q ss_pred             EEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++ ..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (242)
T cd03295           1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRL   50 (242)
T ss_pred             CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999998 7788887766     7999999999999999999864

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.33  E-value=6.3e-07  Score=77.27  Aligned_cols=45  Identities=22%  Similarity=0.323  Sum_probs=40.1

Q ss_pred             eEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|+ +..+++++++.     +++|+|++|||||||++.|.+.
T Consensus         4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (274)
T PRK13647          4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI   54 (274)
T ss_pred             eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            799999999996 56788887776     8999999999999999999864

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.33  E-value=5.7e-07  Score=73.99  Aligned_cols=44  Identities=20%  Similarity=0.518  Sum_probs=37.8

Q ss_pred             EEEecceeEeCCc-----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNS-----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~-----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|+++|++.     .++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~   54 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGE   54 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCc
Confidence            4689999999874     578887665     7999999999999999999853

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.33  E-value=5.7e-07  Score=84.04  Aligned_cols=47  Identities=30%  Similarity=0.402  Sum_probs=42.1

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   53 (501)
T PRK11288          2 SPYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGN   53 (501)
T ss_pred             CceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            3589999999999988889888776     7999999999999999999864

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.33  E-value=6.1e-07  Score=77.45  Aligned_cols=45  Identities=20%  Similarity=0.220  Sum_probs=39.5

Q ss_pred             eEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|+ ...++++.++.     +++|+|++|||||||++.|++.
T Consensus         3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl   53 (277)
T PRK13652          3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGI   53 (277)
T ss_pred             eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            689999999996 45688887776     7999999999999999999864

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.32  E-value=7.6e-07  Score=71.98  Aligned_cols=43  Identities=19%  Similarity=0.288  Sum_probs=37.5

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++++|    ++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~   49 (182)
T cd03215           2 EPVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGL   49 (182)
T ss_pred             CcEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4589999999999    77776655     7999999999999999999864

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=5.8e-07  Score=84.60  Aligned_cols=45  Identities=22%  Similarity=0.271  Sum_probs=41.1

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +|+++|++++|++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl   50 (530)
T PRK15064          1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGD   50 (530)
T ss_pred             CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            48899999999998899998876     8999999999999999999864

>smart00053 DYNc Dynamin, GTPase

Probab=98.32  E-value=6.2e-06  Score=69.46  Aligned_cols=27  Identities=22%  Similarity=0.368  Sum_probs=24.3

Q ss_pred             CcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           29 DVSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        29 ~~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...+|.++++|+.||||||++++|++.
T Consensus        23 ~i~~p~i~vvG~~~~GKSt~l~~i~g~   49 (240)
T smart00053       23 DLDLPQIAVVGGQSAGKSSVLENFVGR   49 (240)
T ss_pred             CCCCCeEEEEcCCCccHHHHHHHHhCC
Confidence            468899999999999999999999853

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.32  E-value=8.4e-07  Score=75.33  Aligned_cols=44  Identities=18%  Similarity=0.339  Sum_probs=40.1

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .++++|+++.|++.+++++.++.     +++|+|++|||||||++.|.+
T Consensus         3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14240          3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNR   51 (250)
T ss_pred             eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            58999999999988888887765     799999999999999999985

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.32  E-value=5.5e-07  Score=72.20  Aligned_cols=44  Identities=27%  Similarity=0.456  Sum_probs=38.6

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (173)
T cd03230           1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGL   49 (173)
T ss_pred             CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999887888887665     7999999999999999999864

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.32  E-value=5.3e-07  Score=74.65  Aligned_cols=44  Identities=27%  Similarity=0.468  Sum_probs=38.2

Q ss_pred             EEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++ ..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292           1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999965 5788887776     7999999999999999999864

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd01850 CDC_Septin CDC/Septin

Probab=98.32  E-value=1.9e-06  Score=74.35  Aligned_cols=21  Identities=38%  Similarity=0.604  Sum_probs=19.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      -++++|.+|+|||||+|+|..
T Consensus         6 ~I~vvG~sg~GKSTliN~L~~   26 (276)
T cd01850           6 NIMVVGESGLGKSTFINTLFN   26 (276)
T ss_pred             EEEEEcCCCCCHHHHHHHHHc
Confidence            467999999999999999984

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=7.9e-07  Score=85.39  Aligned_cols=48  Identities=21%  Similarity=0.368  Sum_probs=43.5

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.++|++++++++|++..+++++++.     +++|+|++|||||||++.|++.
T Consensus       309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~  361 (638)
T PRK10636        309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGE  361 (638)
T ss_pred             CCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45689999999999998899988776     7999999999999999999875

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.32  E-value=9.4e-07  Score=75.11  Aligned_cols=46  Identities=20%  Similarity=0.335  Sum_probs=41.5

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++++++++++|++..++++.++.     +++|+|++|+|||||++.|.+.
T Consensus         3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   53 (252)
T PRK14272          3 LLLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRM   53 (252)
T ss_pred             EEEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            379999999999988899988766     8999999999999999999854

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.31  E-value=6.4e-07  Score=77.72  Aligned_cols=45  Identities=27%  Similarity=0.465  Sum_probs=39.3

Q ss_pred             eEEEecceeEeCC-----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++|+++|++     +.++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl   56 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGL   56 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            5899999999975     3688887666     8999999999999999999864

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=98.31  E-value=1.4e-06  Score=72.73  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=18.9

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|.+|+|||||+++++..
T Consensus         4 IvvvGd~~vGKTsLi~~~~~~   24 (222)
T cd04173           4 IVVVGDAECGKTALLQVFAKD   24 (222)
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            579999999999999999853

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.31  E-value=1.3e-06  Score=72.99  Aligned_cols=50  Identities=30%  Similarity=0.351  Sum_probs=42.5

Q ss_pred             CCCCceEEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            6 EDPPLAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ....+++++++++++|++   ..++++.++.     +++|+|++|||||||++.|+..
T Consensus         6 ~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   63 (226)
T cd03248           6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENF   63 (226)
T ss_pred             CCcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            345788999999999975   3578887665     8999999999999999999854

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.31  E-value=7.8e-07  Score=71.18  Aligned_cols=44  Identities=27%  Similarity=0.405  Sum_probs=38.2

Q ss_pred             EEEecceeEeCCc--ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNS--HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~--~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++.  .++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~   51 (171)
T cd03228           1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRL   51 (171)
T ss_pred             CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            4689999999876  778887665     8999999999999999999854

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.31  E-value=5.7e-07  Score=76.71  Aligned_cols=44  Identities=27%  Similarity=0.355  Sum_probs=40.0

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~   50 (256)
T TIGR03873         2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGA   50 (256)
T ss_pred             ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            5789999999998899988776     7999999999999999999864

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PLN03126 Elongation factor Tu; Provisional

Probab=98.31  E-value=4.3e-06  Score=77.37  Aligned_cols=21  Identities=24%  Similarity=0.238  Sum_probs=19.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .++++|.+++|||||+++|+.
T Consensus        83 ni~iiGhvd~GKSTLi~~Ll~  103 (478)
T PLN03126         83 NIGTIGHVDHGKTTLTAALTM  103 (478)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999984

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=98.31  E-value=1.9e-06  Score=74.68  Aligned_cols=130  Identities=20%  Similarity=0.266  Sum_probs=63.8

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSLVQ  109 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~  109 (263)
                      +...|+++|.+|+||||++|+|+    |.+++.++.-.+++..........  .+.. ..++|+ +|..... ......+
T Consensus        37 ~~~rIllvGktGVGKSSliNsIl----G~~v~~vs~f~s~t~~~~~~~~~~--~G~~-l~VIDT-PGL~d~~~~~e~~~~  108 (313)
T TIGR00991        37 SSLTILVMGKGGVGKSSTVNSII----GERIATVSAFQSEGLRPMMVSRTR--AGFT-LNIIDT-PGLIEGGYINDQAVN  108 (313)
T ss_pred             cceEEEEECCCCCCHHHHHHHHh----CCCcccccCCCCcceeEEEEEEEE--CCeE-EEEEEC-CCCCchHHHHHHHHH
Confidence            44578999999999999999999    665555544333222111100111  1222 257888 6643221 1122223


Q ss_pred             HHHHHHHhccCCcEEEEccc-CCCCchhH-HHHhhcccccccceeeCeEEeeEEEEecCCCCCCC
Q 024744          110 ALEQLVQRKERLDHILLETT-GLANPAPL-ASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPE  172 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~-G~~~p~~~-~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~  172 (263)
                      .++..+. ...+|.+|+-.. +....... .+.+   ..+...+.-+.....++++|++|..+++
T Consensus       109 ~ik~~l~-~~g~DvVLyV~rLD~~R~~~~DkqlL---k~Iqe~FG~~iw~~~IVVfTh~d~~~pd  169 (313)
T TIGR00991       109 IIKRFLL-GKTIDVLLYVDRLDAYRVDTLDGQVI---RAITDSFGKDIWRKSLVVLTHAQFSPPD  169 (313)
T ss_pred             HHHHHhh-cCCCCEEEEEeccCcccCCHHHHHHH---HHHHHHhhhhhhccEEEEEECCccCCCC
Confidence            3333332 246888887421 11111111 1111   1111111111112389999999987653

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.31  E-value=9.1e-07  Score=75.68  Aligned_cols=47  Identities=26%  Similarity=0.354  Sum_probs=41.7

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      =++++++|++++|++..++++.++.     +++|+|++|+|||||++.|.+.
T Consensus         5 ~~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl   56 (261)
T PRK14258          5 IPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRM   56 (261)
T ss_pred             cceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            3579999999999988888887665     8999999999999999999864

>cd01900 YchF YchF subfamily

Probab=98.31  E-value=1.2e-06  Score=75.17  Aligned_cols=38  Identities=26%  Similarity=0.100  Sum_probs=28.2

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA   77 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~   77 (263)
                      ++|+|+||||||||+|+|+    +.+. .+.+.+++|+....+
T Consensus         1 igivG~PN~GKSTLfn~Lt----~~~~-~~~n~pftTi~p~~g   38 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALT----KAGA-EAANYPFCTIEPNVG   38 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHh----CCCC-ccccccccchhceee
Confidence            5799999999999999999    5444 456666666554433

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.31  E-value=5.9e-07  Score=86.29  Aligned_cols=45  Identities=27%  Similarity=0.325  Sum_probs=41.6

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++||+..+++++++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~   52 (635)
T PRK11147          3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGE   52 (635)
T ss_pred             EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            79999999999998899998776     7999999999999999999865

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.31  E-value=6.7e-07  Score=72.01  Aligned_cols=44  Identities=20%  Similarity=0.397  Sum_probs=37.6

Q ss_pred             EEEecceeEeCCc--ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNS--HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~--~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++.  .++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~   51 (178)
T cd03247           1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGD   51 (178)
T ss_pred             CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4689999999775  678877665     7999999999999999999854

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.31  E-value=6e-07  Score=80.33  Aligned_cols=46  Identities=28%  Similarity=0.375  Sum_probs=41.1

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+++++++++|++..++++.++.     +++|+|++|||||||++.|...
T Consensus         4 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl   54 (362)
T TIGR03258         4 GGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGF   54 (362)
T ss_pred             eEEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            458999999999998889887766     7999999999999999999864

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG3596 Predicted GTPase [General function prediction only]

Probab=98.30  E-value=2.6e-06  Score=71.82  Aligned_cols=123  Identities=16%  Similarity=0.138  Sum_probs=57.4

Q ss_pred             EEEE-EEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecc-hhHHHH
Q 024744           33 GVTV-ITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK-HSLVQA  110 (263)
Q Consensus        33 ~vv~-i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~  110 (263)
                      |+.+ ++|..|+|||||+|+|..    .....+..-... .++............  ..+.|+ ||..-...+ .+....
T Consensus        39 pvnvLi~G~TG~GKSSliNALF~----~~~~~v~~vg~~-t~~~~~~~~~~~~~~--l~lwDt-PG~gdg~~~D~~~r~~  110 (296)
T COG3596          39 PVNVLLMGATGAGKSSLINALFQ----GEVKEVSKVGVG-TDITTRLRLSYDGEN--LVLWDT-PGLGDGKDKDAEHRQL  110 (296)
T ss_pred             ceeEEEecCCCCcHHHHHHHHHh----ccCceeeecccC-CCchhhHHhhccccc--eEEecC-CCcccchhhhHHHHHH
Confidence            4544 999999999999999983    222333322211 222222222221111  235677 554221111 113333


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSP  171 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~  171 (263)
                      +.+.+   .+.|++|+-..|..........++ .+.+.....    .+.++++|-+|...+
T Consensus       111 ~~d~l---~~~DLvL~l~~~~draL~~d~~f~-~dVi~~~~~----~~~i~~VtQ~D~a~p  163 (296)
T COG3596         111 YRDYL---PKLDLVLWLIKADDRALGTDEDFL-RDVIILGLD----KRVLFVVTQADRAEP  163 (296)
T ss_pred             HHHHh---hhccEEEEeccCCCccccCCHHHH-HHHHHhccC----ceeEEEEehhhhhcc
Confidence            44443   367877774443221111111111 111111111    338889999997655

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=1e-06  Score=82.87  Aligned_cols=47  Identities=23%  Similarity=0.319  Sum_probs=42.1

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..++++++++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus       317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~  368 (530)
T PRK15064        317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGE  368 (530)
T ss_pred             CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3589999999999988889888776     7999999999999999999854

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.30  E-value=9.2e-07  Score=74.02  Aligned_cols=45  Identities=22%  Similarity=0.438  Sum_probs=39.0

Q ss_pred             eEEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -+++++++++|++ ...+++.++.     +++|+|++|||||||++.|++.
T Consensus         2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~   52 (229)
T cd03254           2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRF   52 (229)
T ss_pred             eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999985 4688887665     7999999999999999999854

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.30  E-value=1e-06  Score=73.24  Aligned_cols=45  Identities=27%  Similarity=0.417  Sum_probs=39.1

Q ss_pred             eEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -+++++++++|++  ..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~   53 (220)
T cd03245           2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL   53 (220)
T ss_pred             eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999976  5688887765     7999999999999999999854

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=8.1e-07  Score=77.22  Aligned_cols=45  Identities=27%  Similarity=0.395  Sum_probs=39.3

Q ss_pred             eEEEecceeEeCC-----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN-----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~-----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++|++     .+++++.++.     +++|+|++|||||||++.|++.
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGL   56 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4899999999975     4688887776     7999999999999999999864

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=1.2e-06  Score=76.65  Aligned_cols=49  Identities=24%  Similarity=0.373  Sum_probs=43.4

Q ss_pred             CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+++++++|++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus        41 ~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl   94 (305)
T PRK14264         41 DGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRM   94 (305)
T ss_pred             CCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            446689999999999998889887776     8999999999999999999854

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=98.30  E-value=4.3e-06  Score=71.80  Aligned_cols=20  Identities=35%  Similarity=0.607  Sum_probs=18.6

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      ++|+|.+|||||||+++|+.
T Consensus         2 i~ivG~~gsGKStL~~~Ll~   21 (268)
T cd04170           2 IALVGHSGSGKTTLAEALLY   21 (268)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999999974

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=1e-06  Score=76.32  Aligned_cols=47  Identities=23%  Similarity=0.331  Sum_probs=40.9

Q ss_pred             CceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++++|++  ..++++.++.     +++|+|++|||||||++.|++.
T Consensus         3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~   56 (282)
T PRK13640          3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGL   56 (282)
T ss_pred             CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence            468999999999975  4588887765     8999999999999999999864

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.30  E-value=7.5e-07  Score=72.82  Aligned_cols=44  Identities=25%  Similarity=0.368  Sum_probs=36.4

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++....+ .++.     +++|+|++|||||||++.|++.
T Consensus         1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   49 (195)
T PRK13541          1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGI   49 (195)
T ss_pred             CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            478999999998755444 5544     8999999999999999999854

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.29  E-value=6.5e-07  Score=72.26  Aligned_cols=43  Identities=28%  Similarity=0.379  Sum_probs=37.7

Q ss_pred             EEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           13 RIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~   48 (180)
T cd03214           1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGL   48 (180)
T ss_pred             CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            468999999887888887776     8999999999999999999854

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.29  E-value=1.1e-06  Score=75.19  Aligned_cols=46  Identities=26%  Similarity=0.416  Sum_probs=41.5

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++++++++++|++.+++++.++.     +++|+|++|||||||++.|++.
T Consensus         6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   56 (259)
T PRK14260          6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI   56 (259)
T ss_pred             ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            479999999999988889888776     7999999999999999999853

>PLN03073 ABC transporter F family; Provisional

Probab=98.29  E-value=1.7e-06  Score=83.94  Aligned_cols=61  Identities=18%  Similarity=0.192  Sum_probs=50.4

Q ss_pred             CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc-----CCCCeEEEEecC
Q 024744            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG-----KHGKRIAVILNE   67 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~-----~~~~~~~ii~~~   67 (263)
                      +.+-+|+++|++++||+...+++.++.     .++|+|++|||||||++.|.+.     .++.++.++.++
T Consensus       173 ~~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~  243 (718)
T PLN03073        173 PAIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQE  243 (718)
T ss_pred             CCceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEecc
Confidence            566789999999999998899998776     7999999999999999999752     235566666554

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.29  E-value=8.4e-07  Score=83.90  Aligned_cols=47  Identities=21%  Similarity=0.292  Sum_probs=41.8

Q ss_pred             CceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+++++|++++|+ +..+++++++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~   54 (552)
T TIGR03719         2 QYIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGV   54 (552)
T ss_pred             cEEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999998 67889988776     7999999999999999999864

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.29  E-value=1e-06  Score=71.97  Aligned_cols=46  Identities=30%  Similarity=0.332  Sum_probs=39.9

Q ss_pred             ceEEEecceeEeCC------cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSN------SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~------~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.+++++++++|++      .+++++.++.     +++|+|++|||||||++.|++.
T Consensus         2 ~~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl   58 (194)
T cd03213           2 VTLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGR   58 (194)
T ss_pred             cEEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999976      5788887766     7999999999999999999853

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.29  E-value=8.7e-07  Score=75.99  Aligned_cols=45  Identities=27%  Similarity=0.399  Sum_probs=38.9

Q ss_pred             eEEEecceeEeCC---------cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN---------SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~---------~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++|+++|++         ..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   60 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL   60 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999963         5678887666     7999999999999999999864

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.29  E-value=1.2e-06  Score=75.08  Aligned_cols=50  Identities=22%  Similarity=0.250  Sum_probs=44.6

Q ss_pred             CCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++.+.++.++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   57 (261)
T PRK14263          3 SEAPIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRM   57 (261)
T ss_pred             CCCCceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence            4678999999999999998889887665     8999999999999999999854

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.29  E-value=8.9e-07  Score=74.38  Aligned_cols=44  Identities=32%  Similarity=0.416  Sum_probs=38.0

Q ss_pred             EEEecceeEeCCc--ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNS--HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~--~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++.  .++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (234)
T cd03251           1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRF   51 (234)
T ss_pred             CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4689999999875  788887665     7999999999999999999854

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.29  E-value=7.7e-07  Score=76.74  Aligned_cols=45  Identities=18%  Similarity=0.207  Sum_probs=39.2

Q ss_pred             eEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|+ ...++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl   51 (275)
T PRK13639          1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGI   51 (275)
T ss_pred             CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            478999999997 45688888776     8999999999999999999864

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.29  E-value=8.8e-07  Score=72.73  Aligned_cols=44  Identities=25%  Similarity=0.331  Sum_probs=38.9

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217           1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999988888887665     8999999999999999999854

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.29  E-value=9.6e-07  Score=77.27  Aligned_cols=45  Identities=24%  Similarity=0.409  Sum_probs=39.3

Q ss_pred             eEEEecceeEeCCc-----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNS-----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~-----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +|++++++++|++.     .++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl   56 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNAL   56 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            58999999999753     478887776     7999999999999999999865

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.29  E-value=2.4e-06  Score=78.02  Aligned_cols=160  Identities=18%  Similarity=0.195  Sum_probs=88.6

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCc-ccccchhhhhcCCCCcceeeeeeecCcceEeecchhHH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE-EIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~-t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~  108 (263)
                      .+.|+|.+.|----|||||+-.|-+.      .+...+.|. |..+-.+.+.........--|+|+ ||          .
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t------~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDT-PG----------H   65 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKT------NVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDT-PG----------H   65 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcC------ccccccCCceeeEeeeEEEEeccCCCceEEEEcC-Cc----------H
Confidence            46799999999999999999999632      233444432 222222222211000001236777 43          1


Q ss_pred             HHHHHHHHhc-cCCcEEEE--cccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHH
Q 024744          109 QALEQLVQRK-ERLDHILL--ETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEI  185 (263)
Q Consensus       109 ~~l~~~~~~~-~~~d~ili--e~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l  185 (263)
                      +++-.+..+- .-.|.+++  +.+.-..|.....+..     .....    .|.+|++||+|+.+..     ..++...+
T Consensus        66 eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~h-----ak~a~----vP~iVAiNKiDk~~~n-----p~~v~~el  131 (509)
T COG0532          66 EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINH-----AKAAG----VPIVVAINKIDKPEAN-----PDKVKQEL  131 (509)
T ss_pred             HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHH-----HHHCC----CCEEEEEecccCCCCC-----HHHHHHHH
Confidence            2333332222 22344443  3344444554433221     11123    4599999999998653     46666666


Q ss_pred             HhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          186 HEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       186 ~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      .+..    +....|+..  ..++++||++|+|+++|...+.
T Consensus       132 ~~~g----l~~E~~gg~--v~~VpvSA~tg~Gi~eLL~~il  166 (509)
T COG0532         132 QEYG----LVPEEWGGD--VIFVPVSAKTGEGIDELLELIL  166 (509)
T ss_pred             HHcC----CCHhhcCCc--eEEEEeeccCCCCHHHHHHHHH
Confidence            6542    122223322  4678999999999999998765

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.28  E-value=9.3e-06  Score=66.45  Aligned_cols=91  Identities=21%  Similarity=0.313  Sum_probs=50.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEe--ecchhHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC--TVKHSLV  108 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~--~~~~~~~  108 (263)
                      .+++++|++|+||||.+-+|...  ..+++++++..|... .+-..++-...       +...+    -++  ....+..
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R-~ga~eQL~~~a-------~~l~v----p~~~~~~~~~~~   69 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR-IGAVEQLKTYA-------EILGV----PFYVARTESDPA   69 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS-THHHHHHHHHH-------HHHTE----EEEESSTTSCHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC-ccHHHHHHHHH-------HHhcc----ccchhhcchhhH
Confidence            37899999999999999999653  239999999988653 33222222110       01111    111  1111222


Q ss_pred             HHHHHHHH--hccCCcEEEEcccCCCCch
Q 024744          109 QALEQLVQ--RKERLDHILLETTGLANPA  135 (263)
Q Consensus       109 ~~l~~~~~--~~~~~d~ilie~~G~~~p~  135 (263)
                      +.+.+.+.  ...+.|+|+|+|.|.....
T Consensus        70 ~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d   98 (196)
T PF00448_consen   70 EIAREALEKFRKKGYDLVLIDTAGRSPRD   98 (196)
T ss_dssp             HHHHHHHHHHHHTTSSEEEEEE-SSSSTH
T ss_pred             HHHHHHHHHHhhcCCCEEEEecCCcchhh
Confidence            22322222  1256899999999987644

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.28  E-value=8.8e-07  Score=76.93  Aligned_cols=45  Identities=20%  Similarity=0.350  Sum_probs=38.8

Q ss_pred             eEEEecceeEeCCc-----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNS-----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~-----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +|++++++++|+..     .++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl   55 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGL   55 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence            58999999999742     478887776     7999999999999999999854

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.28  E-value=1.1e-06  Score=74.93  Aligned_cols=46  Identities=22%  Similarity=0.211  Sum_probs=39.9

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      |-++++++++++| +...+++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~~~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   52 (254)
T PRK10418          2 PQQIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGI   52 (254)
T ss_pred             CcEEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3479999999999 56788887766     7999999999999999999854

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.28  E-value=9.5e-07  Score=75.90  Aligned_cols=45  Identities=22%  Similarity=0.404  Sum_probs=39.5

Q ss_pred             eEEEecceeEeC---------CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFS---------NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~---------~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++||+++|+         +..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   61 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGL   61 (268)
T ss_pred             eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            689999999997         46788887766     7999999999999999999854

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.28  E-value=9e-07  Score=70.94  Aligned_cols=44  Identities=27%  Similarity=0.391  Sum_probs=37.1

Q ss_pred             EEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++  ..++++.++.     +++|+|++|+|||||++.|++.
T Consensus         1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~   51 (173)
T cd03246           1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGL   51 (173)
T ss_pred             CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            468999999976  4577776665     7999999999999999999854

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=98.28  E-value=1.2e-07  Score=76.30  Aligned_cols=53  Identities=21%  Similarity=0.340  Sum_probs=46.9

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE   70 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~   70 (263)
                      ..+.++++.|+|+.++++++.++.     +|++.||+||||||.+..++        +++..+.|.
T Consensus         3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~--------Glv~~d~G~   60 (243)
T COG1137           3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIV--------GLVRPDSGK   60 (243)
T ss_pred             cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEE--------EEEecCCce
Confidence            468899999999999999999887     89999999999999999888        666666665

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.27  E-value=1.1e-06  Score=75.98  Aligned_cols=46  Identities=28%  Similarity=0.300  Sum_probs=39.7

Q ss_pred             ceEEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++++++++++|++   ..++++.++.     +++|+|++|||||||++.|++.
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   56 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGL   56 (279)
T ss_pred             ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            37999999999974   3488887766     7999999999999999999864

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.26  E-value=9.5e-07  Score=70.81  Aligned_cols=38  Identities=24%  Similarity=0.324  Sum_probs=32.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE   75 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d   75 (263)
                      .++++|+||+|||||+|+|+    +.+.+.+.+.+|+|....
T Consensus       119 ~~~~vG~pnvGKSslin~l~----~~~~~~~~~~pg~T~~~~  156 (172)
T cd04178         119 TVGVVGFPNVGKSSLINSLK----RSRACNVGATPGVTKSMQ  156 (172)
T ss_pred             EEEEEcCCCCCHHHHHHHHh----CcccceecCCCCeEcceE
Confidence            68899999999999999999    667777888899876543

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.26  E-value=8.7e-07  Score=74.70  Aligned_cols=44  Identities=30%  Similarity=0.447  Sum_probs=39.3

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++.+.+++.++.     +++|+|++|||||||++.|++.
T Consensus         1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   49 (237)
T TIGR00968         1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGL   49 (237)
T ss_pred             CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999998899887765     8999999999999999999864

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.26  E-value=1.2e-06  Score=84.28  Aligned_cols=48  Identities=19%  Similarity=0.316  Sum_probs=43.1

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +..++++++++++|++..+++++++.     +++|+|++|||||||++.|++.
T Consensus       316 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~  368 (635)
T PRK11147        316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQ  368 (635)
T ss_pred             CCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            45689999999999998899988776     7999999999999999999865

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.26  E-value=1.4e-06  Score=71.13  Aligned_cols=45  Identities=20%  Similarity=0.231  Sum_probs=39.0

Q ss_pred             ceEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           10 LAVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        10 ~~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      -.+++++++++|++    ..++++.++.     +++|+|++|||||||++.|..
T Consensus         2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232           2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999975    5678887665     899999999999999999984

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.26  E-value=1.2e-06  Score=81.64  Aligned_cols=48  Identities=23%  Similarity=0.239  Sum_probs=42.8

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..++++++|++++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus       257 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~  309 (490)
T PRK10938        257 NEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGD  309 (490)
T ss_pred             CCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            45689999999999988888888776     8999999999999999999854

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.26  E-value=1.3e-06  Score=77.41  Aligned_cols=46  Identities=28%  Similarity=0.287  Sum_probs=40.4

Q ss_pred             ceEEEecceeEe----CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEF----SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~----~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++|++++|    |...++++.++.     +++|+|.+|||||||++.|++.
T Consensus         2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl   56 (330)
T PRK15093          2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGV   56 (330)
T ss_pred             CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHcc
Confidence            379999999999    446788888776     7999999999999999999864

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.25  E-value=1.3e-06  Score=75.36  Aligned_cols=46  Identities=22%  Similarity=0.281  Sum_probs=39.5

Q ss_pred             ceEEEecceeEeCCc---ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++|++.   .+++++++.     +++|+|++|||||||++.|++.
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl   56 (277)
T PRK13642          3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGL   56 (277)
T ss_pred             ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            379999999999752   478887665     8999999999999999999864

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.25  E-value=8.4e-07  Score=71.41  Aligned_cols=40  Identities=23%  Similarity=0.240  Sum_probs=34.0

Q ss_pred             ecceeEeCCcccCCCc-ceE---EEEEEccCCCcHHHHHHHHHc
Q 024744           15 DETTHEFSNSHENDDV-SVG---VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        15 ~~~~~~~~~~~~~~~~-~~~---vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .|++++||+..++.+. .++   +++|+|++|||||||++.|..
T Consensus         4 ~~l~~~~~~~~~l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~G   47 (177)
T cd03222           4 PDCVKRYGVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAG   47 (177)
T ss_pred             CCeEEEECCEEEEccCcEECCCCEEEEECCCCChHHHHHHHHHc
Confidence            5799999998888764 332   899999999999999999984

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.25  E-value=1.1e-06  Score=73.83  Aligned_cols=44  Identities=23%  Similarity=0.332  Sum_probs=39.4

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      |++++++++|++...+++.++.     +++|+|++|+|||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~   49 (232)
T cd03300           1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGF   49 (232)
T ss_pred             CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            4689999999988889887665     8999999999999999999865

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.25  E-value=1.2e-06  Score=82.85  Aligned_cols=47  Identities=30%  Similarity=0.382  Sum_probs=42.8

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++++|+++.+++++++.     +++|+|++|||||||++.|++.
T Consensus       322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~  373 (556)
T PRK11819        322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQ  373 (556)
T ss_pred             CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999998899998776     7999999999999999999864

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.25  E-value=1.2e-06  Score=69.80  Aligned_cols=44  Identities=23%  Similarity=0.269  Sum_probs=37.6

Q ss_pred             EEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      |++++++++|++ .+.+++.++.     +++|+|++|||||||++.|++.
T Consensus         1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   50 (166)
T cd03223           1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGL   50 (166)
T ss_pred             CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999964 5678887666     8999999999999999999864

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.23  E-value=2.5e-05  Score=69.84  Aligned_cols=88  Identities=20%  Similarity=0.287  Sum_probs=53.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceE--eecchhHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC--CTVKHSLV  108 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~--~~~~~~~~  108 (263)
                      .+++|+|++||||||++.+|...  ..|.+++++..|... .+...+.....          +. .|+-+  +.....+.
T Consensus       242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R-iaAvEQLk~ya----------e~-lgipv~v~~d~~~L~  309 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQLQDYV----------KT-IGFEVIAVRDEAAMT  309 (436)
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHh----------hh-cCCcEEecCCHHHHH
Confidence            58999999999999999999653  357889999988653 22222221111          00 11111  12224445


Q ss_pred             HHHHHHHHhccCCcEEEEcccCCCC
Q 024744          109 QALEQLVQRKERLDHILLETTGLAN  133 (263)
Q Consensus       109 ~~l~~~~~~~~~~d~ilie~~G~~~  133 (263)
                      ..+..+.. ..+.|+|||++.|...
T Consensus       310 ~aL~~lk~-~~~~DvVLIDTaGRs~  333 (436)
T PRK11889        310 RALTYFKE-EARVDYILIDTAGKNY  333 (436)
T ss_pred             HHHHHHHh-ccCCCEEEEeCccccC
Confidence            55554432 2368999999999755

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.23  E-value=1.5e-06  Score=72.91  Aligned_cols=45  Identities=22%  Similarity=0.360  Sum_probs=39.8

Q ss_pred             ceEEEecceeEeCCc-ccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           10 LAVRIDETTHEFSNS-HENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~-~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +++++++++++|++. .++++.++.     .++|+|++|||||||++.|..
T Consensus         2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~G   52 (235)
T COG1122           2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG   52 (235)
T ss_pred             ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence            578999999999886 888877665     799999999999999999974

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.23  E-value=1.6e-06  Score=73.54  Aligned_cols=44  Identities=25%  Similarity=0.455  Sum_probs=39.7

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++++++|+++|++..++++.++.     +++|+|++|||||||++.|.+
T Consensus         3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G   51 (250)
T PRK14266          3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNR   51 (250)
T ss_pred             EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence            58899999999988888887666     799999999999999999984

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.23  E-value=4.3e-05  Score=65.53  Aligned_cols=114  Identities=18%  Similarity=0.277  Sum_probs=66.8

Q ss_pred             CCceEE--EecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC
Q 024744            8 PPLAVR--IDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE   83 (263)
Q Consensus         8 ~~~~~~--~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~   83 (263)
                      ....++  ++++++.|.......+ .-+.++++|++|+||||++..|...  ..+.+++++..|... .+...+......
T Consensus        50 ~~~vl~~v~~~l~~~~~~~~~~~~-~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r-i~~~~ql~~~~~  127 (270)
T PRK06731         50 TEEVIEYILEDMSSHFNTENVFEK-EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR-IGTVQQLQDYVK  127 (270)
T ss_pred             ccHHHHHHhcccEEeeCCcccccC-CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC-HHHHHHHHHHhh
Confidence            334446  7788888865544433 4469999999999999999999654  236788888887432 222212111110


Q ss_pred             CCcceeeeeeecCcceEeecchhHHHHHHHHHHhccCCcEEEEcccCCCC
Q 024744           84 GGALVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLAN  133 (263)
Q Consensus        84 ~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~  133 (263)
                       ..-+ .+..       +.....+...+..+. ...+.|+|+|++.|...
T Consensus       128 -~~~~-~~~~-------~~~~~~l~~~l~~l~-~~~~~D~ViIDt~Gr~~  167 (270)
T PRK06731        128 -TIGF-EVIA-------VRDEAAMTRALTYFK-EEARVDYILIDTAGKNY  167 (270)
T ss_pred             -hcCc-eEEe-------cCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCc
Confidence             0000 1111       112234445555443 23478999999999764

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.22  E-value=2.8e-06  Score=79.25  Aligned_cols=60  Identities=22%  Similarity=0.303  Sum_probs=50.7

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccC----------CCCeEEEEecCCC
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGK----------HGKRIAVILNEFG   69 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~----------~~~~~~ii~~~~g   69 (263)
                      .+|++.+++++||++..+++.++.     -++++|++|+|||||++.|.+..          ++.+++++.+++.
T Consensus         2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~   76 (530)
T COG0488           2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPP   76 (530)
T ss_pred             ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCC
Confidence            478999999999999999998877     69999999999999999997641          3457788777753

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=98.22  E-value=4.7e-06  Score=65.89  Aligned_cols=38  Identities=32%  Similarity=0.576  Sum_probs=32.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~   70 (263)
                      ++++|+|++|||||||+++|+..  ..|.+++++.++...
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~~~~   41 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHDHHD   41 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEecCCc
Confidence            68999999999999999999875  347889999887543

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.22  E-value=1.7e-06  Score=81.86  Aligned_cols=47  Identities=28%  Similarity=0.357  Sum_probs=42.7

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++++|+++.+++++++.     +++|+|++|||||||++.|.+.
T Consensus       320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~  371 (552)
T TIGR03719       320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQ  371 (552)
T ss_pred             CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            4689999999999998899988776     8999999999999999999864

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.22  E-value=1.5e-06  Score=73.12  Aligned_cols=44  Identities=25%  Similarity=0.382  Sum_probs=37.6

Q ss_pred             EEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|+ +...+++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl   50 (236)
T cd03253           1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRF   50 (236)
T ss_pred             CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            46899999996 56688887665     7999999999999999999854

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.22  E-value=2e-06  Score=77.84  Aligned_cols=46  Identities=35%  Similarity=0.511  Sum_probs=42.7

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++++++++|+|++..+++++++.     +-++.|-+|||||||++.|..
T Consensus         2 ~~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G   52 (501)
T COG3845           2 EPALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFG   52 (501)
T ss_pred             CceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhC
Confidence            4789999999999999999998877     789999999999999999984

>cd04169 RF3 RF3 subfamily

Probab=98.21  E-value=3.1e-05  Score=66.49  Aligned_cols=23  Identities=30%  Similarity=0.280  Sum_probs=20.5

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +..|+|+|.+|||||||+++|+.
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~   24 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLL   24 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHH
Confidence            35689999999999999999985

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.21  E-value=1.9e-06  Score=73.55  Aligned_cols=47  Identities=21%  Similarity=0.191  Sum_probs=40.9

Q ss_pred             CceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+.+++++++++|++  ..++++.++.     +++|+|++|||||||++.|++.
T Consensus        17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   70 (257)
T cd03288          17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRM   70 (257)
T ss_pred             CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcc
Confidence            467999999999987  5678887766     7999999999999999999854

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=2.1e-06  Score=75.95  Aligned_cols=49  Identities=22%  Similarity=0.274  Sum_probs=42.2

Q ss_pred             CCCceEEEecceeEeC--CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +..++|+++|++++|.  ...++++.++.     +++|+|++|||||||++.|++.
T Consensus        76 ~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~  131 (329)
T PRK14257         76 NHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL  131 (329)
T ss_pred             CcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            5567999999999995  35688887766     7999999999999999999854

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=98.21  E-value=6.5e-06  Score=70.78  Aligned_cols=92  Identities=22%  Similarity=0.271  Sum_probs=53.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc---ccccchhhhhcCCCCcceeeeeeec-CcceEeecchh
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE---EIGVERAMINEGEGGALVEEWVELA-NGCICCTVKHS  106 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~---t~~~d~~~~~~~~~~~~~~~~~~l~-~g~~~~~~~~~  106 (263)
                      ++++|+|++|||||||+.+|+..  ..| +++++.++.+.   +.+.|.......+..    ..+.++ +...+-.....
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~~~~g~Ds~~~~~aGa~----~v~~~s~~~~~~~~~~~~   76 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMDTERLNPDGTDTGRHFDAGAD----VVYGLTDGEWVASGRDRS   76 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcCCCCCCCcHHHHHCCCc----EEEEecCCeEEEEecCCC
Confidence            57999999999999999999875  346 89999998742   112233222222111    112221 22221122233


Q ss_pred             HHHHHHHHHHhccCCcEEEEcccCCC
Q 024744          107 LVQALEQLVQRKERLDHILLETTGLA  132 (263)
Q Consensus       107 ~~~~l~~~~~~~~~~d~ilie~~G~~  132 (263)
                      +.+.+..+.   ..+|+||+|...-.
T Consensus        77 l~~~l~~l~---~~~D~vlVEG~k~~   99 (274)
T PRK14493         77 LDDALDDLA---PGMDYAVVEGFKDS   99 (274)
T ss_pred             HHHHHHhhC---cCCCEEEEECCCCC
Confidence            444444332   36899999887643

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.21  E-value=1.3e-06  Score=76.92  Aligned_cols=56  Identities=30%  Similarity=0.482  Sum_probs=42.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceE
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC  100 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~  100 (263)
                      -++++|.||+|||||||+|+    +++.+.+++.||.|.+.....+..+      ..++|+ ||.+.
T Consensus       134 ~v~vvG~PNVGKSslIN~L~----~k~~~~~s~~PG~Tk~~q~i~~~~~------i~LlDt-PGii~  189 (322)
T COG1161         134 RVGVVGYPNVGKSTLINRLL----GKKVAKTSNRPGTTKGIQWIKLDDG------IYLLDT-PGIIP  189 (322)
T ss_pred             EEEEEcCCCCcHHHHHHHHh----cccceeeCCCCceecceEEEEcCCC------eEEecC-CCcCC
Confidence            48999999999999999999    8888999999998766543333321      136677 66543

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.20  E-value=1.8e-06  Score=76.25  Aligned_cols=45  Identities=27%  Similarity=0.310  Sum_probs=40.1

Q ss_pred             eEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++    ..+++++++.     +++|+|++|||||||++.|++.
T Consensus         3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gl   56 (326)
T PRK11022          3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGL   56 (326)
T ss_pred             eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence            6899999999987    4688888776     7999999999999999999864

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.20  E-value=1.6e-06  Score=72.98  Aligned_cols=44  Identities=18%  Similarity=0.297  Sum_probs=37.1

Q ss_pred             EEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|++++|++   ..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~   52 (238)
T cd03249           1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERF   52 (238)
T ss_pred             CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhcc
Confidence            468999999975   4578876655     8999999999999999999854

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.20  E-value=1.6e-06  Score=83.07  Aligned_cols=51  Identities=20%  Similarity=0.211  Sum_probs=43.6

Q ss_pred             CCCCCceEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            5 EEDPPLAVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +-.+.+++++++++++|++    .++++++++.     +++|+|++|||||||++.|++.
T Consensus         6 ~~~~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gl   65 (623)
T PRK10261          6 ELDARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRL   65 (623)
T ss_pred             cCCCCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence            3456779999999999963    4688888776     8999999999999999999875

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=98.20  E-value=3.7e-06  Score=69.58  Aligned_cols=23  Identities=35%  Similarity=0.418  Sum_probs=20.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      --++++|..|||||||++++...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~   28 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGD   28 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcC
Confidence            35789999999999999999975

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.20  E-value=2.3e-06  Score=71.21  Aligned_cols=44  Identities=18%  Similarity=0.277  Sum_probs=38.3

Q ss_pred             EEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++  ..++++.++.     +++|+|++|||||||++.|...
T Consensus         3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~   53 (221)
T cd03244           3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRL   53 (221)
T ss_pred             EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            789999999974  4688887666     8999999999999999999854

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.19  E-value=1.7e-06  Score=72.79  Aligned_cols=44  Identities=27%  Similarity=0.357  Sum_probs=37.4

Q ss_pred             EEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++|++  ..++++.++.     +++|+|++|||||||++.|++.
T Consensus         1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (237)
T cd03252           1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF   51 (237)
T ss_pred             CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            468999999974  5678887665     7999999999999999999864

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.19  E-value=1.4e-06  Score=78.94  Aligned_cols=46  Identities=28%  Similarity=0.415  Sum_probs=38.3

Q ss_pred             ceEEEecceeEeCCcc------------------------cCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSH------------------------ENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~------------------------~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+|++++|+|.||..+                        ++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl   77 (400)
T PRK10070          3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRL   77 (400)
T ss_pred             cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence            4799999999998865                        45555544     8999999999999999999864

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.19  E-value=4.8e-06  Score=73.98  Aligned_cols=38  Identities=29%  Similarity=0.110  Sum_probs=29.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER   76 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~   76 (263)
                      .++|+|+||||||||+|+|+    +.+ +.+.+.+++|+....
T Consensus         4 ~vgIVG~PNvGKSTLfnaLt----~~~-~~v~nypftTi~p~~   41 (364)
T PRK09601          4 KCGIVGLPNVGKSTLFNALT----KAG-AEAANYPFCTIEPNV   41 (364)
T ss_pred             EEEEECCCCCCHHHHHHHHh----CCC-CeecccccccccceE
Confidence            58999999999999999999    555 466776777665443

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.19  E-value=1.9e-06  Score=72.33  Aligned_cols=43  Identities=28%  Similarity=0.328  Sum_probs=35.4

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++|+++|++...  +.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~l~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (232)
T PRK10771          1 MLKLTDITWLYHHLPM--RFDLTVERGERVAILGPSGAGKSTLLNLIAGF   48 (232)
T ss_pred             CeEEEEEEEEECCccc--eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999986443  44444     8999999999999999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	263
1nij_A	318	Yjia Protein Length = 318		6e-17
4ixn_A	318	Crystal Structure Of Zn(ii)-bound E37a,c66a,c67a Tr		5e-15

>pdb|1NIJ|A Chain A, Yjia Protein Length = 318

Iteration: 1
 Score = 84.3 bits (207), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 111/229 (48%), Gaps = 40/229 (17%)
Query: 32  VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
           + VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFG E+ V+  +I     G    + 
Sbjct: 4   IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFG-EVSVDDQLI-----GDRATQI 57
Query: 92  VELANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQL 147
             L NGCICC+  + L  AL  L+   ++     D +++E TG+A+P P+    +  + L
Sbjct: 58  KTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVL 117
Query: 148 ESAVRLDSII-------------------TDVVILNKVDLVSPERSGDSLDELEKEIHEI 188
                LD +I                   + V   +++ L   + +G++ ++L + +  I
Sbjct: 118 CQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEA-EKLHERLARI 176
Query: 189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLH 237
           N+ A V       +DL  + N   +          +LEE+   +    H
Sbjct: 177 NARAPVYTVTHGDIDLGLLFNTNGF----------MLEENVVSTKPRFH 215

>pdb|4IXN|A Chain A, Crystal Structure Of Zn(ii)-bound E37a,c66a,c67a Triple Mutant Yjia Gtpase Length = 318

Iteration: 1
 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 40/229 (17%)
Query: 32  VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
           + VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFG E+ V+  +I     G    + 
Sbjct: 4   IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIANEFG-EVSVDDQLI-----GDRATQI 57
Query: 92  VELANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQL 147
             L NGCI  +  + L  AL  L+   ++     D +++E TG+A+P P+    +  + L
Sbjct: 58  KTLTNGCIAASRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVL 117
Query: 148 ESAVRLDSII-------------------TDVVILNKVDLVSPERSGDSLDELEKEIHEI 188
                LD +I                   + V   +++ L   + +G++ ++L + +  I
Sbjct: 118 CQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGEA-EKLHERLARI 176
Query: 189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLH 237
           N+ A V       +DL  + N   +          +LEE+   +    H
Sbjct: 177 NARAPVYTVTHGDIDLGLLFNTNGF----------MLEENVVSTKPRFH 215

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	263
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	5e-78
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	4e-05

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 Length = 318

 Score =  237 bits (608), Expect = 5e-78
 Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 45/252 (17%)

Query: 34  VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVE 93
           VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFG E+ V+  +I +        +   
Sbjct: 6   VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFG-EVSVDDQLIGDRA-----TQIKT 59

Query: 94  LANGCICCTVKHSLVQALEQLVQRKER----LDHILLETTGLANPAPLASVLWLDDQLES 149
           L NGCICC+  + L  AL  L+   ++     D +++E TG+A+P P+    +  + L  
Sbjct: 60  LTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQ 119

Query: 150 AVRLDSIIT------------------------DVVILNKVDLVSPERSGDSLDELEKEI 185
              LD +I                         D ++L K D+          ++L + +
Sbjct: 120 RYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGE------AEKLHERL 173

Query: 186 HEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLS 245
             IN+ A V       +DL  + N   +        E ++             N++ ++ 
Sbjct: 174 ARINARAPVYTVTHGDIDLGLLFNTNGFMLE-----ENVVSTKPRFHFIADKQNDISSIV 228

Query: 246 ICEPLAVNLDKV 257
           +     V++ +V
Sbjct: 229 VELDYPVDISEV 240

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 2e-09
 Identities = 46/319 (14%), Positives = 92/319 (28%), Gaps = 106/319 (33%)

Query: 3   DEEEDPPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIA 62
           D +      V   +   +   +      +  V +I G LG+GK+ +            + 
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVA-----------LD 169

Query: 63  VILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQLVQR----- 117
           V L+       V+  M    +       W+ L N    C    ++++ L++L+ +     
Sbjct: 170 VCLSY-----KVQCKM----DFKIF---WLNLKN----CNSPETVLEMLQKLLYQIDPNW 213

Query: 118 KERLDHI----------------LLETTGLANPAPLASVLWLDDQLESAV---------- 151
             R DH                 LL++    N      +L L +   +            
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-----CLLVLLNVQNAKAWNAFNLSCKI 268

Query: 152 ----RLDSIITDVVILNKVDLVSPERSGDSL-----------------DELEKEIHEINS 190
               R    +TD +       +S +    +L                  +L +E+   N 
Sbjct: 269 LLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 191 LAH-----VIRSVRCQVDLSEVLNCRAYDAT---HVTRLEGLLEEHQYKSSQNLHDNNVR 242
                    IR      D  + +NC          +  LE       +            
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR---------- 377

Query: 243 TLSICEPLAVNLDKVILQI 261
            LS+  P + ++  ++L +
Sbjct: 378 -LSVF-PPSAHIPTILLSL 394

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 33/191 (17%)

Query: 22  SNSHENDDVSVGVTVITGFLGAGKSTLVNYILN-GKHGKRIAVILNEFGEEIGVERAMIN 80
           S+ H +  ++  + V  G  G+GK+TL        +   ++A +  + G +       I+
Sbjct: 4   SHHHHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSID 63

Query: 81  EGEGGAL---VEEWVELANGCICCT--VKHSLVQALEQLVQRKERLDHILLETTGLANP- 134
             E   +   + E        +     +     + L ++++ ++  D++L++T G     
Sbjct: 64  VREFVTVEEIMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETF 123

Query: 135 -------------APLASVLWLDDQ-------------LESAVRLDSIITDVVILNKVDL 168
                             V   D +                 + L    T +  LNKVDL
Sbjct: 124 LFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDL 183

Query: 169 VSPERSGDSLD 179
           +S E       
Sbjct: 184 LSEEEKERHRK 194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	99.95
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.66
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.63
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.61
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.6
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.57
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.57
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.53
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.51
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.5
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.49
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.48
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.47
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.47
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.44
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.43
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.42
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.39
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.37
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.37
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.37
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.35
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.35
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.35
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.34
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.32
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.29
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.29
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.27
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.27
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.26
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.26
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.26
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.25
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.25
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.25
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.24
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.24
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.24
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.24
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.23
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.23
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.23
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.22
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.22
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.22
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.21
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.21
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.21
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.2
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.2
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.2
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.2
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.2
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.2
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.2
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.2
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.19
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.18
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.18
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.18
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.18
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.18
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.17
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.17
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.17
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.17
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.16
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.16
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.16
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.15
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.15
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.15
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.15
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.15
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.14
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.14
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.14
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.14
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.14
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.14
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.14
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.13
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.13
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.13
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.13
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.13
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.12
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.12
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.12
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.12
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.11
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.11
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.11
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.11
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.11
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.1
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.1
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.1
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.1
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.1
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.09
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.09
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.09
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.09
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.08
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.08
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.07
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.07
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.06
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.06
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.06
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.06
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.05
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.05
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.05
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.05
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.05
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.05
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.04
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.04
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.03
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.03
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.03
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.02
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.59
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.02
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.02
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.01
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.0
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.0
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.0
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.99
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.98
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.98
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.98
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	98.98
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.97
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	98.96
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.95
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.95
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.95
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.95
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	98.94
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.94
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.93
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.93
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.93
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	98.92
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.92
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.92
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	98.91
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.91
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.91
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.9
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.89
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.89
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.87
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.86
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.85
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.85
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	98.85
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	98.85
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.84
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.83
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.82
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.81
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.81
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	98.8
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.77
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.77
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.77
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.77
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.76
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.76
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.76
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.75
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	98.75
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.74
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	98.74
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.74
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.74
1g6h_A	257	High-affinity branched-chain amino acid transport	98.73
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.73
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.72
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.71
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.69
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.67
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.66
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.65
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.65
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.64
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.62
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.6
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.6
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.6
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.59
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	98.59
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.58
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.58
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.58
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.57
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	98.57
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.57
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.56
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.56
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.56
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	98.56
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.53
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.53
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.53
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.51
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.51
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.51
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	98.5
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.49
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.49
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.49
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.49
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.48
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.47
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.47
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.47
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.46
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.46
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.46
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	98.46
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.44
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.44
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.44
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.4
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.36
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.35
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.34
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.27
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.25
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.24
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.24
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.17
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.12
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.11
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.11
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.09
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.08
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.06
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.06
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.05
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.03
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.0
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.0
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.99
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.99
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.98
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.97
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.91
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.91
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	97.87
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.84
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.82
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.81
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	97.73
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.72
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	97.71
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.71
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.71
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.68
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.66
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.65
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.64
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.64
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	97.63
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.63
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.62
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.62
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.59
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.58
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.58
2xxa_A	433	Signal recognition particle protein; protein trans	97.56
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	97.56
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.55
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.54
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.52
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.51
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.49
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.47
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.47
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.47
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.46
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.45
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.44
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.44
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.44
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.44
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.43
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.41
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.41
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	97.4
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.4
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.38
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.36
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.33
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.33
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.32
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.32
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.31
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.31
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.3
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.29
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.26
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.23
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.23
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.22
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.21
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.2
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.2
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.19
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.19
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.18
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.17
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.16
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.15
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.15
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.15
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.14
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.14
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.11
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.1
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.1
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.09
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.08
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.08
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.07
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.07
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	97.04
2og2_A	359	Putative signal recognition particle receptor; nuc	97.03
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.01
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.01
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.98
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.98
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.97
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.97
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.97
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.97
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.96
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.93
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.93
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.9
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.9
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.89
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.88
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.87
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.87
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.85
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.84
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.83
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.83
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.82
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.82
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.82
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.81
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.81
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.81
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.8
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.79
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.78
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.76
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.75
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.74
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.73
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.72
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.72
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.72
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.72
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.71
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.71
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.7
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.68
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.68
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.67
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.66
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.66
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.66
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.64
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.63
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.6
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.6
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.58
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.58
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.56
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.56
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.56
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.55
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	96.54
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.52
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.52
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.52
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.51
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.51
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	96.5
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.49
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.49
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.48
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.47
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.47
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.46
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.45
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	96.45
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.43
1via_A	175	Shikimate kinase; structural genomics, transferase	96.43
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.4
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.4
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.39
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.39
3end_A	307	Light-independent protochlorophyllide reductase ir	96.39
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.38
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.38
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.37
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.36
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.34
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.32
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.31
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.29
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.29
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.28
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.27
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.26
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.24
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.23
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.23
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.23
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	96.22
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.21
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.21
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.2
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.15
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.13
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.13
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.11
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.11
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.07
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.06
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.06
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.06
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.06
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.04
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.02
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.0
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	95.99
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	95.98
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	95.97
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.97
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.94
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.92
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.91
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.91
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.89
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	95.84
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.82
3bos_A	242	Putative DNA replication factor; P-loop containing	95.82
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.8
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.79
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.78
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	95.78
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.76
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	95.76
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.75
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.74
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.73
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	95.72
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.69
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.66
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.63
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.61
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	95.61
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.55
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.55
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.53
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.53
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.49
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.47
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.45
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.44
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.44
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.44
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.44
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.29
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.28
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	95.27
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.26
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.26
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.21
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.21
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.17
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.15
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.15
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.15
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.13
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.11
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	95.07
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.04

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=99.95  E-value=9.6e-27  Score=203.31  Aligned_cols=215  Identities=30%  Similarity=0.531  Sum_probs=158.3

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      ++|+++|+||+|||||||+|.|++..++.+++|+.|++|+ +.+|...+....     .+++++.+||+||+.+.++...
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~-i~idg~~l~~~~-----~~~~el~~gCicc~~~~~~~~~   76 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELEDA   76 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCS-CCEEEEEECTTS-----CEEEEETTSCEEECTTSCHHHH
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcc-cCccHHHHhCCC-----CCEEEECCCceEEcccHHHHHH
Confidence            5899999999999999999999988789999999999998 888876554321     3578899999999999998888


Q ss_pred             HHHHHH--hccC--CcEEEEcccCCCCchhHHHHhhcccccccceeeCeE------------------------EeeEEE
Q 024744          111 LEQLVQ--RKER--LDHILLETTGLANPAPLASVLWLDDQLESAVRLDSI------------------------ITDVVI  162 (263)
Q Consensus       111 l~~~~~--~~~~--~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~------------------------i~~iiv  162 (263)
                      +..++.  ....  ++++++|++|+++|.++...++.++.......+..+                        .+++++
T Consensus        77 l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~il  156 (318)
T 1nij_A           77 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL  156 (318)
T ss_dssp             HHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEE
T ss_pred             HHHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEE
Confidence            887751  2233  499999999999988754322111111111111111                        127889


Q ss_pred             EecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCCCCCCEE
Q 024744          163 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVR  242 (263)
Q Consensus       163 lNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~~~~~i~  242 (263)
                      +||.|++++.      +.+.+.++.++|.+.++...++.++.+.++.+..+.......     ...+...+++.|++++.
T Consensus       157 l~k~dl~de~------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~  225 (318)
T 1nij_A          157 LTKTDVAGEA------EKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVV-----STKPRFHFIADKQNDIS  225 (318)
T ss_dssp             EECTTTCSCT------HHHHHHHHHHCSSSCEEECCSSCCCGGGGSCCCTTSCCSCCC-----SSCCCSCSTGGGGCSEE
T ss_pred             EECcccCCHH------HHHHHHHHHhCCCCeEEEecccCCCHHHHhCCCCCChhhhhc-----ccCcccccccCCCCCeE
Confidence            9999999642      678888888999999999999999988888766543221110     00011112344667899


Q ss_pred             EEEEEcCCCCCHHHHHhhhc
Q 024744          243 TLSICEPLAVNLDKVILQIA  262 (263)
Q Consensus       243 ~~~~~~~~~~~~~~l~~~l~  262 (263)
                      ++++++++|+++++|..||+
T Consensus       226 s~~~~~~~~~~~~~l~~~l~  245 (318)
T 1nij_A          226 SIVVELDYPVDISEVSRVME  245 (318)
T ss_dssp             EEEEEESSCBCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            99999999999999999985

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.66  E-value=9.6e-17  Score=132.05  Aligned_cols=171  Identities=16%  Similarity=0.262  Sum_probs=106.7

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      +.+.++++|++|||||||+++|+.. ....+++++.++++.  ..|...+...+     ..++.+..||.||.....+.+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~--~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  101 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVS--KADYERVRRFG-----IKAEAISTGKECHLDAHMIYH  101 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCC--HHHHHHHHTTT-----CEEEECCCTTCSSCCHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCC--chhHHHHHhCC-----CcEEEecCCceeecccHHHHH
Confidence            5689999999999999999999865 234689999999985  34444443321     134556677765543332222


Q ss_pred             HHHHHHHhccCCcEEEEcccCC-CCchhHH-----HHhhccc-----ccccceeeCeEEeeEEEEecCCCCCCCCCcchH
Q 024744          110 ALEQLVQRKERLDHILLETTGL-ANPAPLA-----SVLWLDD-----QLESAVRLDSIITDVVILNKVDLVSPERSGDSL  178 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~-~~p~~~~-----~~~~~~~-----~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~  178 (263)
                      .+.    ....+|++++|++|. ..|....     .++..+.     ........ ...+.++|+||+|+.+..+  ...
T Consensus       102 ~~~----~~~~~d~iiidt~G~~~~~~~~~~~~~~~i~vvd~~~~~~~~~~~~~~-~~~~~iiv~NK~Dl~~~~~--~~~  174 (221)
T 2wsm_A          102 RLK----KFSDCDLLLIENVGNLICPVDFDLGENYRVVMVSVTEGDDVVEKHPEI-FRVADLIVINKVALAEAVG--ADV  174 (221)
T ss_dssp             TGG----GGTTCSEEEEEEEEBSSGGGGCCCSCSEEEEEEEGGGCTTHHHHCHHH-HHTCSEEEEECGGGHHHHT--CCH
T ss_pred             HHH----hcCCCCEEEEeCCCCCCCCchhccccCcEEEEEeCCCcchhhhhhhhh-hhcCCEEEEecccCCcchh--hHH
Confidence            222    235789999999994 3332210     0000000     00000000 0134899999999975311  135


Q ss_pred             HHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          179 DELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       179 ~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      +.+.+.++.+++.+             +++.+||++|.|++++.+++.+.
T Consensus       175 ~~~~~~~~~~~~~~-------------~i~~~Sa~~g~gi~~l~~~l~~~  211 (221)
T 2wsm_A          175 EKMKADAKLINPRA-------------KIIEMDLKTGKGFEEWIDFLRGI  211 (221)
T ss_dssp             HHHHHHHHHHCTTS-------------EEEECBTTTTBTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCC-------------eEEEeecCCCCCHHHHHHHHHHH
Confidence            67777777776544             47889999999999999988754

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.63  E-value=1.4e-15  Score=134.05  Aligned_cols=186  Identities=16%  Similarity=0.125  Sum_probs=94.8

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc------C-CCCcceeeeeeecCcceE
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE------G-EGGALVEEWVELANGCIC  100 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~------~-~~~~~~~~~~~l~~g~~~  100 (263)
                      ...++++|+|+||||||||+|+|+..  ..+.+++|+.+++++ ...+..++..      . .....  .+...+.+|.|
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~-~~~~g~~l~d~~rm~~~~~~~~~--~v~~~~~~~~l  148 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS-CTSGGSLLGDKTRMTELSRDMNA--YIRPSPTRGTL  148 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------CCSTTCTTE--EEECC------
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC-CCcCcchhchHHHHHHhcCCCCE--EEEecCCcccc
Confidence            34789999999999999999999864  346899999999986 3322222211      0 00111  12344567776


Q ss_pred             eecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHH----H--hhcccc--cc-cceee-CeEEeeEEEEecCCCCC
Q 024744          101 CTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLAS----V--LWLDDQ--LE-SAVRL-DSIITDVVILNKVDLVS  170 (263)
Q Consensus       101 ~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~----~--~~~~~~--l~-~~~~~-~~~i~~iivlNK~Dl~~  170 (263)
                      |....+..+.+..+  .....+++++||+|+.++.....    .  +..+..  .. ..+.. -...++++|+||+|+.+
T Consensus       149 gg~tr~~~~~~~~~--~~~~~~~iliDT~Gi~~~~~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~~  226 (349)
T 2www_A          149 GGVTRTTNEAILLC--EGAGYDIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDL  226 (349)
T ss_dssp             ---CTTHHHHHHHH--HHTTCSEEEEECCCC--CHHHHHTTCSEEEEEECCC------------CCSCSEEEECCCSGGG
T ss_pred             ccchHHHHHHHHhh--ccCCCCEEEEECCCcchhhhhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCCC
Confidence            64444444555432  23678999999999876543211    0  001110  00 00000 00135899999999975


Q ss_pred             CCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          171 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       171 ~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      ..........+...++..+|.+.        .+..+++.+||++|.|+++|++++.+.
T Consensus       227 ~~~~~~~~~~l~~~l~~~~~~a~--------~~~~~vi~iSA~~g~Gi~~L~~~I~~~  276 (349)
T 2www_A          227 IVPARRIQAEYVSALKLLRKRSQ--------VWKPKVIRISARSGEGISEMWDKMKDF  276 (349)
T ss_dssp             HHHHHHHHHHHHHHHTTCC-------------CCCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcCcccc--------CCCceEEEEecCCCCCHHHHHHHHHHH
Confidence            32110112233333333333210        012357889999999999999988754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.61  E-value=3.7e-15  Score=129.24  Aligned_cols=169  Identities=21%  Similarity=0.302  Sum_probs=99.3

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ...+.|+|+|.+|||||||+|+|+    +.+++++++.+++|+........... ... ..++|+ +|..-......+.+
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~----g~~~~i~s~~~~tT~~~~~~~~~~~~-~~~-i~lvDT-PG~~~~~~~~~l~~   80 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLL----GTKVSIISPKAGTTRMRVLGVKNIPN-EAQ-IIFLDT-PGIYEPKKSDVLGH   80 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCCSCEEEEEEETT-TEE-EEEEEC-CCCCCCCTTCHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHh----CCCccccCCCCCceeeEEEEEEecCC-CCe-EEEEEC-cCCCccccchhHHH
Confidence            345699999999999999999999    77777788888876654444333321 111 247888 55422111133334


Q ss_pred             HHHHHHHhc-cCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCC-CCCCCcchHHHHHHHHHh
Q 024744          110 ALEQLVQRK-ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLV-SPERSGDSLDELEKEIHE  187 (263)
Q Consensus       110 ~l~~~~~~~-~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~-~~~~~~~~~~~~~~~l~~  187 (263)
                      .+....... ..+|.+++-.+............+ ...+.. ..    ++.++|+||+|+. +..    .+....+.+..
T Consensus        81 ~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~-~~~l~~-~~----~pvilV~NK~Dl~~~~~----~~~~~~~~l~~  150 (308)
T 3iev_A           81 SMVEIAKQSLEEADVILFMIDATEGWRPRDEEIY-QNFIKP-LN----KPVIVVINKIDKIGPAK----NVLPLIDEIHK  150 (308)
T ss_dssp             HHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH-HHHTGG-GC----CCEEEEEECGGGSSSGG----GGHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHH-HHHHHh-cC----CCEEEEEECccCCCCHH----HHHHHHHHHHH
Confidence            443333221 467888773332211111111110 112222 11    4589999999998 443    23444445554


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ...            .+.+++++||++|.|+++|.+++..
T Consensus       151 ~~~------------~~~~i~~vSA~~g~gv~~L~~~l~~  178 (308)
T 3iev_A          151 KHP------------ELTEIVPISALKGANLDELVKTILK  178 (308)
T ss_dssp             HCT------------TCCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             hcc------------CCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            432            2336889999999999999988864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.60  E-value=1.7e-15  Score=133.92  Aligned_cols=184  Identities=21%  Similarity=0.209  Sum_probs=104.7

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhc--------CCCCcceeeeeeecCcceE
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINE--------GEGGALVEEWVELANGCIC  100 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~--------~~~~~~~~~~~~l~~g~~~  100 (263)
                      +.++++|+|++|+|||||+++|+..  ..|.+++++..|++.+. .....+..        ...+.   .+...+++|.|
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~-~~g~~l~d~~~~~~~~~~~~~---~i~~~~~~~~~  153 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTR-TGGSILGDKTRMARLAVHPNA---YIRPSPTSGTL  153 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----------------CHHHHTCTTE---EEECCC--CCH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCc-ccchhccchhhHHhhccCCCe---eEEECCCCccc
Confidence            4578999999999999999999764  45899999999987632 11111100        01111   23455566655


Q ss_pred             eecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHH----H--hhccc----ccccceeeCeEEeeEEEEecCCCCC
Q 024744          101 CTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLAS----V--LWLDD----QLESAVRLDSIITDVVILNKVDLVS  170 (263)
Q Consensus       101 ~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~----~--~~~~~----~l~~~~~~~~~i~~iivlNK~Dl~~  170 (263)
                      +.......+.+. .+. ....+++|++|.|+..+.....    .  +.++.    .+......-..+++++|+||+|+.+
T Consensus       154 ~~~~~~t~d~i~-~~~-~~~~~~iiiDTpGi~~~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~~  231 (355)
T 3p32_A          154 GGVTRATRETVV-LLE-AAGFDVILIETVGVGQSEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEH  231 (355)
T ss_dssp             HHHHHHHHHHHH-HHH-HTTCCEEEEEECSCSSHHHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCGGG
T ss_pred             cchhHHHHHHHH-HHh-hCCCCEEEEeCCCCCcHHHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCCcC
Confidence            555555555553 332 3678999999999877654321    0  00111    0111000001136899999999976


Q ss_pred             CCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          171 PERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       171 ~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      ........+.+.+.+...+|..        ..+..+++++||++|+|+++|++++...
T Consensus       232 ~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~vi~iSA~~g~Gi~~L~~~i~~~  281 (355)
T 3p32_A          232 HKEARLAARELSAAIRLIYPRE--------ALWRPPVLTMSAVEGRGLAELWDTVERH  281 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTC--------CSCCCCEEEEBGGGTBSHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhccccc--------cCCCCceEEEEcCCCCCHHHHHHHHHHH
Confidence            4321122334455554444321        0012368899999999999999988754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.57  E-value=2.4e-15  Score=124.03  Aligned_cols=173  Identities=22%  Similarity=0.306  Sum_probs=104.5

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ..+.++|+|++|||||||+++++.. ....+++++..+++.  ..|...+...+     ...+.+.+||.|+....+..+
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~--~~d~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~  109 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIA--KFDAERMEKHG-----AKVVPLNTGKECHLDAHLVGH  109 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTT--HHHHHHHHTTT-----CEEEEEECTTCSSCCHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCC--CccHHHHHhcC-----CcEEEecCCceEeccHHHHHH
Confidence            5678999999999999999999865 334678999999875  34444443321     134556567775543333323


Q ss_pred             HHHHHHHhccCCcEEEEcccCC-CCchhHHHHhhcccccccceeeCe---------EEeeEEEEecCCCCCCCCCcchHH
Q 024744          110 ALEQLVQRKERLDHILLETTGL-ANPAPLASVLWLDDQLESAVRLDS---------IITDVVILNKVDLVSPERSGDSLD  179 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~-~~p~~~~~~~~~~~~l~~~~~~~~---------~i~~iivlNK~Dl~~~~~~~~~~~  179 (263)
                      .+..+  ....+|+++++++|. ..+..+.........+........         ..++++|+||+|+.+..+  ...+
T Consensus       110 ~~~~l--~~~~~d~~~id~~g~i~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~--~~~~  185 (226)
T 2hf9_A          110 ALEDL--NLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIEKHPGIMKTADLIVINKIDLADAVG--ADIK  185 (226)
T ss_dssp             HHTTS--CGGGCSEEEEECCSCSSGGGGCCCSCSEEEEEEEGGGCTTTTTTCHHHHTTCSEEEEECGGGHHHHT--CCHH
T ss_pred             HHHHH--hcCCCCEEEEeCCCCccCcchhhhccCcEEEEEecCcchhhHhhhhhHhhcCCEEEEeccccCchhH--HHHH
Confidence            33222  124679999999994 333221100000000000000000         022599999999875321  1356


Q ss_pred             HHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          180 ELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       180 ~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ++.+.++.+++.+             +++.+||++|.|++++.+++..
T Consensus       186 ~~~~~~~~~~~~~-------------~~~~~Sa~~g~gv~~l~~~l~~  220 (226)
T 2hf9_A          186 KMENDAKRINPDA-------------EVVLLSLKTMEGFDKVLEFIEK  220 (226)
T ss_dssp             HHHHHHHHHCTTS-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCC-------------eEEEEEecCCCCHHHHHHHHHH
Confidence            6777777666544             4788999999999999988754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.57  E-value=9.4e-15  Score=126.30  Aligned_cols=164  Identities=23%  Similarity=0.245  Sum_probs=98.0

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      .+.+.++|+|.||||||||+|+|+    +.+++++++.+++|+..........  ... ..++|+ +|.  ......+.+
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~----g~~~~ivs~~~~tTr~~i~~i~~~~--~~~-l~l~DT-pG~--~~~~~~l~~   74 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLL----GVKVAPISPRPQTTRKRLRGILTEG--RRQ-IVFVDT-PGL--HKPMDALGE   74 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCCSCEEEEEEET--TEE-EEEEEC-CCC--CCCCSHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHh----CCceeeecCCCCceeEEEEEEEEeC--CcE-EEEecC-ccc--cchhhHHHH
Confidence            456789999999999999999999    7777777777877654333333221  111 247888 553  223333444


Q ss_pred             HHHHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744          110 ALEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI  188 (263)
Q Consensus       110 ~l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~  188 (263)
                      .+...... ...+|.+++-.+...........  +...+....   .-.|.++|+||+|+.+..      ..+.+.++.+
T Consensus        75 ~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~--i~~~l~~~~---~~~p~ilV~NK~Dl~~~~------~~~~~~~~~~  143 (301)
T 1wf3_A           75 FMDQEVYEALADVNAVVWVVDLRHPPTPEDEL--VARALKPLV---GKVPILLVGNKLDAAKYP------EEAMKAYHEL  143 (301)
T ss_dssp             HHHHHHHHHTSSCSEEEEEEETTSCCCHHHHH--HHHHHGGGT---TTSCEEEEEECGGGCSSH------HHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCEEEEEEECCCCCChHHHH--HHHHHHhhc---CCCCEEEEEECcccCCch------HHHHHHHHHh
Confidence            44433322 25788888844432222211111  111122110   014589999999998653      1133444443


Q ss_pred             cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .             ++.+++++||++|.|++++.+++..
T Consensus       144 ~-------------~~~~~~~iSA~~g~gv~~l~~~l~~  169 (301)
T 1wf3_A          144 L-------------PEAEPRMLSALDERQVAELKADLLA  169 (301)
T ss_dssp             S-------------TTSEEEECCTTCHHHHHHHHHHHHT
T ss_pred             c-------------CcCcEEEEeCCCCCCHHHHHHHHHH
Confidence            1             3446889999999999999998875

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.53  E-value=1.5e-15  Score=133.23  Aligned_cols=207  Identities=18%  Similarity=0.207  Sum_probs=111.9

Q ss_pred             eEEEecceeEeCCcccCCCcc-----eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC-
Q 024744           11 AVRIDETTHEFSNSHENDDVS-----VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-   82 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-----~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~-   82 (263)
                      ++++++++++|+...++++.+     -.+++|+|+||||||||+|.|+..  ..+.+++++..+++++. .+..+.... 
T Consensus        29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~-~~~~~~~~~~  107 (337)
T 2qm8_A           29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTR-TGGSILGDKT  107 (337)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGS-SCCCSSCCGG
T ss_pred             HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccc-cccchHHHhh
Confidence            356788899998766665543     348999999999999999999864  33788999999886522 110000000 


Q ss_pred             CCCccee---eeeeecCcceEeecchhHHHHHHHHH-HhccCCcEEEEcccCCCCchhHHH-H----h-hccc----ccc
Q 024744           83 EGGALVE---EWVELANGCICCTVKHSLVQALEQLV-QRKERLDHILLETTGLANPAPLAS-V----L-WLDD----QLE  148 (263)
Q Consensus        83 ~~~~~~~---~~~~l~~g~~~~~~~~~~~~~l~~~~-~~~~~~d~ilie~~G~~~p~~~~~-~----~-~~~~----~l~  148 (263)
                      .-+....   -++...+.  ||.+.+......+... ......+++++||+|+.++..... .    + ..+.    .+.
T Consensus       108 ~i~~v~q~~~~~~~~~~~--~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~  185 (337)
T 2qm8_A          108 RMARLAIDRNAFIRPSPS--SGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ  185 (337)
T ss_dssp             GSTTGGGCTTEEEECCCC--CSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-----
T ss_pred             hheeeccCcccccccCcc--cccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH
Confidence            0000000   01110111  2444443333333331 123689999999999988754221 0    0 0110    000


Q ss_pred             cceeeCeEEeeEEEEecCCCCCCCC-CcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          149 SAVRLDSIITDVVILNKVDLVSPER-SGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       149 ~~~~~~~~i~~iivlNK~Dl~~~~~-~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ........+++++++||+|+.+... .....+++...+..++|..        ..+..+++.+||.+|.|+++|++.+.+
T Consensus       186 ~i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~--------~~~~~~vl~~Sal~g~gi~~L~~~I~~  257 (337)
T 2qm8_A          186 GIKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPS--------ATWTPPVVTISGLHGKGLDSLWSRIED  257 (337)
T ss_dssp             -CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSB--------TTBCCCEEEEBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccc--------cCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence            0000000134788999999865321 0001223333332233311        001235778999999999999998876


Q ss_pred             h
Q 024744          228 H  228 (263)
Q Consensus       228 ~  228 (263)
                      .
T Consensus       258 ~  258 (337)
T 2qm8_A          258 H  258 (337)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.51  E-value=3.3e-14  Score=124.96  Aligned_cols=204  Identities=16%  Similarity=0.149  Sum_probs=109.3

Q ss_pred             EEecceeEeCCcccCC-----CcceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCC
Q 024744           13 RIDETTHEFSNSHEND-----DVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGG   85 (263)
Q Consensus        13 ~~~~~~~~~~~~~~~~-----~~~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~   85 (263)
                      +.+++.++|+...++.     ..+.++++++|++|||||||+|.|+..  ..+.+++++..+++++. .+..++...   
T Consensus        32 e~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~-~~~~il~d~---  107 (341)
T 2p67_A           32 ESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPV-TGGSILGDK---  107 (341)
T ss_dssp             HCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC----------------
T ss_pred             hcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCC-CCcceeccc---
Confidence            3345555665544432     234568999999999999999999754  34789999999998632 222222111   


Q ss_pred             cceeeeeeecCcceEeecchh-----HHHHHHHHHH-hccCCcEEEEcccCCCCchhHHHH------hhccc----cccc
Q 024744           86 ALVEEWVELANGCICCTVKHS-----LVQALEQLVQ-RKERLDHILLETTGLANPAPLASV------LWLDD----QLES  149 (263)
Q Consensus        86 ~~~~~~~~l~~g~~~~~~~~~-----~~~~l~~~~~-~~~~~d~ilie~~G~~~p~~~~~~------~~~~~----~l~~  149 (263)
                      .....+...+++++||.....     ....+..+.. .....+++|++|.|+.++......      +..+.    .+..
T Consensus       108 ~~~~~~~~~~~~~i~~~~~~~~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~aD~vl~Vvd~~~~~~~~~  187 (341)
T 2p67_A          108 TRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQG  187 (341)
T ss_dssp             ---CTTTTCTTEEEEEECC-----CHHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC------CC
T ss_pred             chHHhhccCCCceeecCccccccchhHHHHHHHHHHhhccCCCEEEEeCCCccchHHHHHHhCCEEEEEEeCCccHHHHH
Confidence            001112223466776644221     1122222221 135789999999999887653210      00111    0000


Q ss_pred             ceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          150 AVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       150 ~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      .......++.++|+||+|+.+.......++.+++.++..++..        ..+..+++++||++|.|+++|.+++...
T Consensus       188 l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~--------~~~~~~vi~iSA~~g~gi~~L~~~l~~~  258 (341)
T 2p67_A          188 IKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHILRRKY--------DEWQPRVLTCSALEKRGIDEIWHAIIDF  258 (341)
T ss_dssp             CCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSB--------TTBCCEEEECBGGGTBSHHHHHHHHHHH
T ss_pred             HHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccc--------cCCCCcEEEeeCCCCCCHHHHHHHHHHH
Confidence            0000001358999999999764211111223444443333310        0012357899999999999999988764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.50  E-value=2.1e-14  Score=117.93  Aligned_cols=184  Identities=18%  Similarity=0.152  Sum_probs=98.3

Q ss_pred             cccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec
Q 024744           24 SHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV  103 (263)
Q Consensus        24 ~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~  103 (263)
                      .........+.|+|+|.+|||||||+|+|+...   +++.+...+|+|.......+... .+.. ..++|+ +|......
T Consensus        21 ~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~---~~~~~~~~~~~t~~~~~~~~~~~-~~~~-~~l~Dt-pG~~~~~~   94 (223)
T 4dhe_A           21 LRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQK---RLAFASKTPGRTQHINYFSVGPA-AEPV-AHLVDL-PGYGYAEV   94 (223)
T ss_dssp             GGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCS---SSSCTTCCCCSCCCEEEEEESCT-TSCS-EEEEEC-CCCCSSCC
T ss_pred             hhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCC---cceeecCCCCcccceEEEEecCC-CCCc-EEEEcC-CCCCcccC
Confidence            344444556789999999999999999999431   13344455565444322222211 1111 247888 55321111


Q ss_pred             ----chhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHH
Q 024744          104 ----KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLD  179 (263)
Q Consensus       104 ----~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~  179 (263)
                          ...+...+...+.....+|.+++-.+........ ...+ ...+.. ..    ++.++|+||+|+.+..+.....+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~-~~~l~~-~~----~p~i~v~nK~Dl~~~~~~~~~~~  167 (223)
T 4dhe_A           95 PGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRRM-IEWFAP-TG----KPIHSLLTKCDKLTRQESINALR  167 (223)
T ss_dssp             CSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHH-HHHHGG-GC----CCEEEEEECGGGSCHHHHHHHHH
T ss_pred             ChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHH-HHHHHh-cC----CCEEEEEeccccCChhhHHHHHH
Confidence                2333445555554445577777733332111111 1111 111211 11    45899999999987642212233


Q ss_pred             HHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          180 ELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       180 ~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      .+.+.+....+.        +.....+++++||++|.|++++.+++...
T Consensus       168 ~~~~~l~~~~~~--------~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  208 (223)
T 4dhe_A          168 ATQKSLDAYRDA--------GYAGKLTVQLFSALKRTGLDDAHALIESW  208 (223)
T ss_dssp             HHHHHHHHHHHH--------TCCSCEEEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhc--------ccCCCCeEEEeecCCCcCHHHHHHHHHHh
Confidence            444444443100        00022357889999999999999988754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.49  E-value=6.2e-14  Score=121.17  Aligned_cols=162  Identities=19%  Similarity=0.270  Sum_probs=93.1

Q ss_pred             CcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHH
Q 024744           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (263)
Q Consensus        29 ~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~  108 (263)
                      ..+.+.++|+|+||||||||+|+|+    +.++++++..+++|+......+...  ... ..++|+ +|..     ....
T Consensus         5 ~~r~~~VaIvG~~nvGKSTLln~L~----g~~~~i~s~~~~tTr~~~~gi~~~~--~~~-i~~iDT-pG~~-----~~~~   71 (301)
T 1ega_A            5 KSYCGFIAIVGRPNVGKSTLLNKLL----GQKISITSRKAQTTRHRIVGIHTEG--AYQ-AIYVDT-PGLH-----MEEK   71 (301)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHH----TCSEEECCCCSSCCSSCEEEEEEET--TEE-EEEESS-SSCC-----HHHH
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHH----CCCccccCCCCCcceeeEEEEEEEC--Cee-EEEEEC-cCCC-----ccch
Confidence            3566789999999999999999999    7788888887877654333333322  111 246777 4531     0111


Q ss_pred             HHHHHHHH----h-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHH
Q 024744          109 QALEQLVQ----R-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEK  183 (263)
Q Consensus       109 ~~l~~~~~----~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~  183 (263)
                      ..+.+...    . ...+|.+++-.+... .......+  ...+..     ...|.++++||+|+.+..      +.+.+
T Consensus        72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i--~~~l~~-----~~~P~ilvlNK~D~~~~~------~~~~~  137 (301)
T 1ega_A           72 RAINRLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMV--LNKLRE-----GKAPVILAVNKVDNVQEK------ADLLP  137 (301)
T ss_dssp             HHHHHHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHH--HHHHHS-----SSSCEEEEEESTTTCCCH------HHHHH
T ss_pred             hhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHH--HHHHHh-----cCCCEEEEEECcccCccH------HHHHH
Confidence            22222211    1 135677766333221 22221111  111111     114589999999998631      23334


Q ss_pred             HHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          184 EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       184 ~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .++.+...          .++..++++||.+|.|++++.+.+..
T Consensus       138 ~l~~l~~~----------~~~~~~i~iSA~~g~~v~~l~~~i~~  171 (301)
T 1ega_A          138 HLQFLASQ----------MNFLDIVPISAETGLNVDTIAAIVRK  171 (301)
T ss_dssp             HHHHHHTT----------SCCSEEEECCTTTTTTHHHHHHHHHT
T ss_pred             HHHHHHHh----------cCcCceEEEECCCCCCHHHHHHHHHH
Confidence            44433221          12346789999999999999988874

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.48  E-value=6.1e-14  Score=118.45  Aligned_cols=158  Identities=20%  Similarity=0.188  Sum_probs=95.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecch-----hH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKH-----SL  107 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~-----~~  107 (263)
                      |.++++|.+|+|||||+|+|+    |.+ ..+.+.+|.|.......+...+  . -..++|+ +|..  ....     ..
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~----g~~-~~v~~~pg~Tv~~~~~~~~~~~--~-~~~lvDt-pG~~--~~~~~~~~~~~   70 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALT----NAN-QRVGNWPGVTVEKKTGEFLLGE--H-LIEITDL-PGVY--SLVANAEGISQ   70 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH----TTS-EEEEECTTSSSEEEEEEEEETT--E-EEEEEEC-CCCS--SCC------CH
T ss_pred             CEEEEECCCCCCHHHHHHHHH----CCC-CCccCCCCceEEEEEEEEEECC--e-EEEEEeC-CCcc--cccccccCCCH
Confidence            578999999999999999999    444 4567777876554433333222  1 1257888 5542  1111     22


Q ss_pred             HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      .+.+.+.......+|.+++    +.|.........+..++... .    +|.++|+||+|+.+........+.+.+.+. 
T Consensus        71 ~e~i~~~~~~~~~~d~vi~----VvDas~~~~~~~l~~~l~~~-~----~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg-  140 (256)
T 3iby_A           71 DEQIAAQSVIDLEYDCIIN----VIDACHLERHLYLTSQLFEL-G----KPVVVALNMMDIAEHRGISIDTEKLESLLG-  140 (256)
T ss_dssp             HHHHHHHHHHHSCCSEEEE----EEEGGGHHHHHHHHHHHTTS-C----SCEEEEEECHHHHHHTTCEECHHHHHHHHC-
T ss_pred             HHHHHHHHHhhCCCCEEEE----EeeCCCchhHHHHHHHHHHc-C----CCEEEEEEChhcCCcCCcHHHHHHHHHHcC-
Confidence            3333332222357899888    55544432222222222221 2    459999999998765433334444444331 


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                          .             +++++||++|.|++++.+++.+.
T Consensus       141 ----~-------------~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          141 ----C-------------SVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             ----S-------------CEEECBGGGTBSHHHHHHHHHTC
T ss_pred             ----C-------------CEEEEECCCCCCHHHHHHHHHhh
Confidence                1             47889999999999999988764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.47  E-value=1.8e-13  Score=109.49  Aligned_cols=171  Identities=18%  Similarity=0.233  Sum_probs=91.4

Q ss_pred             ccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec-
Q 024744           25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV-  103 (263)
Q Consensus        25 ~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~-  103 (263)
                      ...+....+-++++|.+|||||||+|+++.    .+.....+.+|++.........    ..  ..++|+ +|...... 
T Consensus        16 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~----~~~~~~~~~~~~t~~~~~~~~~----~~--~~i~Dt-~G~~~~~~~   84 (195)
T 3pqc_A           16 GDYPPPLKGEVAFVGRSNVGKSSLLNALFN----RKIAFVSKTPGKTRSINFYLVN----SK--YYFVDL-PGYGYAKVS   84 (195)
T ss_dssp             TCCCCCTTCEEEEEEBTTSSHHHHHHHHHT----SCCSCCCSSCCCCCCEEEEEET----TT--EEEEEC-CCBSSSCCC
T ss_pred             hhCCCCCCeEEEEECCCCCCHHHHHHHHHc----CccccccCCCCCccCeEEEEEC----Cc--EEEEEC-CCCccccCC
Confidence            334444566889999999999999999994    3333334444543332211111    11  136777 44211111 


Q ss_pred             ---chhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHH
Q 024744          104 ---KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDE  180 (263)
Q Consensus       104 ---~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~  180 (263)
                         ...+.............+|.+++-.+...........  +...+... .    ++.++|+||+|+.++.+    ...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~--~~~~~~~~-~----~p~i~v~nK~Dl~~~~~----~~~  153 (195)
T 3pqc_A           85 KKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM--MVEWMKSL-N----IPFTIVLTKMDKVKMSE----RAK  153 (195)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT-T----CCEEEEEECGGGSCGGG----HHH
T ss_pred             hhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH--HHHHHHHc-C----CCEEEEEEChhcCChHH----HHH
Confidence               1223334444444334567777744432211111110  01111111 1    45899999999987653    333


Q ss_pred             HHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       181 ~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ..+.++......          ...+++.+||++|.|++++.+++.+
T Consensus       154 ~~~~~~~~~~~~----------~~~~~~~~Sa~~~~gv~~l~~~l~~  190 (195)
T 3pqc_A          154 KLEEHRKVFSKY----------GEYTIIPTSSVTGEGISELLDLIST  190 (195)
T ss_dssp             HHHHHHHHHHSS----------CCSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhc----------CCCceEEEecCCCCCHHHHHHHHHH
Confidence            334443332211          1125788999999999999988764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.47  E-value=6.7e-14  Score=119.35  Aligned_cols=161  Identities=19%  Similarity=0.207  Sum_probs=94.7

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-c--chhHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-V--KHSLV  108 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~--~~~~~  108 (263)
                      ...|+++|.+|||||||+|+|+    +.+ ..+.+.+|.|.......+...+  .. ..++|+ +|..-.. .  ...+.
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~----g~~-~~v~~~~g~t~~~~~~~~~~~~--~~-~~liDt-pG~~~~~~~~~~~~~~   73 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLT----GSR-QRVGNWAGVTVERKEGQFSTTD--HQ-VTLVDL-PGTYSLTTISSQTSLD   73 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH----TTC-EEEEECTTSSSEEEEEEEECSS--CE-EEEEEC-CCCSCSCC----CCHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHh----CCC-cccCCCCCeeEEEEEEEEEeCC--Cc-eEEEEC-cCCCccccccccCCHH
Confidence            3578999999999999999999    554 4677888876544333333221  11 246888 4431111 0  02233


Q ss_pred             HHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI  188 (263)
Q Consensus       109 ~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~  188 (263)
                      +.+.+.......+|.+++    +.|.........+...+... .    +|.++|+||+|+.+........+.+.+.+.  
T Consensus        74 e~i~~~~~~~~~~d~ii~----VvD~~~~~~~~~~~~~l~~~-~----~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg--  142 (274)
T 3i8s_A           74 EQIACHYILSGDADLLIN----VVDASNLERNLYLTLQLLEL-G----IPCIVALNMLDIAEKQNIRIEIDALSARLG--  142 (274)
T ss_dssp             HHHHHHHHHHTCCSEEEE----EEEGGGHHHHHHHHHHHHHH-T----CCEEEEEECHHHHHHTTEEECHHHHHHHHT--
T ss_pred             HHHHHHHHhhcCCCEEEE----EecCCChHHHHHHHHHHHhc-C----CCEEEEEECccchhhhhHHHHHHHHHHhcC--
Confidence            333333222357899888    55544432222111222221 2    458999999998765433233444444331  


Q ss_pred             cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                         .             +++++||++|.|+++|.+++...
T Consensus       143 ---~-------------~~i~~SA~~g~gi~el~~~i~~~  166 (274)
T 3i8s_A          143 ---C-------------PVIPLVSTRGRGIEALKLAIDRY  166 (274)
T ss_dssp             ---S-------------CEEECCCGGGHHHHHHHHHHHTC
T ss_pred             ---C-------------CEEEEEcCCCCCHHHHHHHHHHH
Confidence               1             47889999999999999988753

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.44  E-value=3.1e-13  Score=119.66  Aligned_cols=171  Identities=18%  Similarity=0.182  Sum_probs=86.5

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ..++.++|+|++|||||||+|+|+    +... .+.+.+++|++.....+...+  .. ..++++ +|.+ .....++.+
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~----~~~~-~~~~~~~~T~d~~~~~i~~~g--~~-v~l~DT-~G~i-~~lp~~lve  246 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLT----GLTQ-KVDTKLFTTMSPKRYAIPINN--RK-IMLVDT-VGFI-RGIPPQIVD  246 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHH----CC------------CCSCEEEEEETT--EE-EEEEEC-CCBC-SSCCGGGHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHH----CCCc-cccCCcccccCCEEEEEEECC--EE-EEEEeC-CCch-hcCCHHHHH
Confidence            356789999999999999999999    4433 445555655544333333322  11 145666 4432 222344445


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCch--hHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPA--PLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~--~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      .+...+.....+|.+++-.+ ..++.  ...........+... ... -++.++|.||+|+.+... ....+.+.+..+.
T Consensus       247 ~f~~tl~~~~~aD~il~VvD-~s~~~~~~~~~~~~~~~~L~~l-~~~-~~p~ilV~NK~Dl~~~~~-~~~~~~~~~l~~~  322 (364)
T 2qtf_A          247 AFFVTLSEAKYSDALILVID-STFSENLLIETLQSSFEILREI-GVS-GKPILVTLNKIDKINGDL-YKKLDLVEKLSKE  322 (364)
T ss_dssp             HHHHHHHGGGGSSEEEEEEE-TTSCHHHHHHHHHHHHHHHHHH-TCC-SCCEEEEEECGGGCCSCH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCEEEEEEE-CCCCcchHHHHHHHHHHHHHHh-CcC-CCCEEEEEECCCCCCchH-HHHHHHHHHHHHH
Confidence            55555544467888877333 33333  111110001111110 111 145899999999987531 0011112222233


Q ss_pred             h-cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          188 I-NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       188 ~-~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      + .+.             .+++++||++|.|+++|.+++.+
T Consensus       323 l~~~~-------------~~~~~~SA~~g~gi~~L~~~I~~  350 (364)
T 2qtf_A          323 LYSPI-------------FDVIPISALKRTNLELLRDKIYQ  350 (364)
T ss_dssp             HCSCE-------------EEEEECBTTTTBSHHHHHHHHHH
T ss_pred             hcCCC-------------CcEEEEECCCCcCHHHHHHHHHH
Confidence            3 211             13578999999999999988764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.43  E-value=1.6e-12  Score=104.23  Aligned_cols=173  Identities=16%  Similarity=0.229  Sum_probs=87.8

Q ss_pred             CCcccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCe-EEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceE
Q 024744           22 SNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC  100 (263)
Q Consensus        22 ~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~-~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~  100 (263)
                      .+...++....+-++++|.+|||||||+|+|+.    .+ .......+|.|.......+.  .  .  ..++|+ +|...
T Consensus        13 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~----~~~~~~~~~~~~~t~~~~~~~~~--~--~--~~l~Dt-~G~~~   81 (195)
T 1svi_A           13 VKPEQYPEGGLPEIALAGRSNVGKSSFINSLIN----RKNLARTSSKPGKTQTLNFYIIN--D--E--LHFVDV-PGYGF   81 (195)
T ss_dssp             SSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHT----C-------------CCEEEEEET--T--T--EEEEEC-CCBCC
T ss_pred             CChhhCCCCCCCEEEEECCCCCCHHHHHHHHhC----CCCccccCCCCCceeeEEEEEEC--C--c--EEEEEC-CCCCc
Confidence            444555555677899999999999999999994    33 33444555544433222111  1  1  246777 44211


Q ss_pred             eec----chhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcc
Q 024744          101 CTV----KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGD  176 (263)
Q Consensus       101 ~~~----~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~  176 (263)
                      ...    ...+.............+|.+++-.+. .++....+.. +...+.. ..    ++.++|+||+|+.+..+   
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~-~~~~~~~~~~-~~~~~~~-~~----~p~i~v~nK~Dl~~~~~---  151 (195)
T 1svi_A           82 AKVSKSEREAWGRMIETYITTREELKAVVQIVDL-RHAPSNDDVQ-MYEFLKY-YG----IPVIVIATKADKIPKGK---  151 (195)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEET-TSCCCHHHHH-HHHHHHH-TT----CCEEEEEECGGGSCGGG---
T ss_pred             cccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEEC-CCCCCHHHHH-HHHHHHH-cC----CCEEEEEECcccCChHH---
Confidence            111    122333344444333345777763332 2221111110 0011111 11    44899999999987652   


Q ss_pred             hHHHHHHHHHh-hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          177 SLDELEKEIHE-INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       177 ~~~~~~~~l~~-~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                       .....+.+++ +...           ....++.+||++|.|++++.+++..
T Consensus       152 -~~~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~gv~~l~~~l~~  191 (195)
T 1svi_A          152 -WDKHAKVVRQTLNID-----------PEDELILFSSETKKGKDEAWGAIKK  191 (195)
T ss_dssp             -HHHHHHHHHHHHTCC-----------TTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHccc-----------CCCceEEEEccCCCCHHHHHHHHHH
Confidence             3333333333 2210           1235788999999999999988754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.42  E-value=8.9e-13  Score=120.22  Aligned_cols=171  Identities=16%  Similarity=0.129  Sum_probs=80.9

Q ss_pred             EeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcce
Q 024744           20 EFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI   99 (263)
Q Consensus        20 ~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~   99 (263)
                      +-|..+....++.|.|+|+|.+|+|||||+|+|+    +.+.+++.+.+|.|+......+...+  .. ..++|+ +|..
T Consensus        11 ~~~~~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~----~~~~~~v~~~~g~t~~~~~~~~~~~~--~~-~~liDT-~G~~   82 (456)
T 4dcu_A           11 SSGLVPRGSHMGKPVVAIVGRPNVGKSTIFNRIA----GERISIVEDTPGVTRDRIYSSAEWLN--YD-FNLIDT-GGID   82 (456)
T ss_dssp             ------------CCEEEEECSSSSSHHHHHHHHE----EEEEC-----------CEEEECTTCS--SC-CEEECC-CC--
T ss_pred             cCCCCCChhhcCCCEEEEECCCCCcHHHHHHHHh----CCCCcccCCCCCcceeEEEEEEEECC--ce-EEEEEC-CCCC
Confidence            3344555566788999999999999999999999    77778888888876554333333322  21 257787 4432


Q ss_pred             EeecchhHHHHHHHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchH
Q 024744          100 CCTVKHSLVQALEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSL  178 (263)
Q Consensus       100 ~~~~~~~~~~~l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~  178 (263)
                        .....+.+.+...... ...+|.+++..++..........  +...+.. ..    ++.++|+||+|+.+...     
T Consensus        83 --~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~--l~~~l~~-~~----~pvilV~NK~D~~~~~~-----  148 (456)
T 4dcu_A           83 --IGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEE--VAKILYR-TK----KPVVLAVNKLDNTEMRA-----  148 (456)
T ss_dssp             ------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHH--HHHHHTT-CC----SCEEEEEECC------------
T ss_pred             --CcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHH--HHHHHHH-cC----CCEEEEEECccchhhhh-----
Confidence              1111122333333221 14678888865543322221111  1112222 11    45899999999875421     


Q ss_pred             HHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          179 DELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       179 ~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                       ..               ..+...++.+.+++||.+|.|+++|.+.+...
T Consensus       149 -~~---------------~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~  182 (456)
T 4dcu_A          149 -NI---------------YDFYSLGFGEPYPISGTHGLGLGDLLDAVAEH  182 (456)
T ss_dssp             ------------------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTT
T ss_pred             -hH---------------HHHHHcCCCceEEeecccccchHHHHHHHHhh
Confidence             00               01122244567899999999999999887653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.39  E-value=1.8e-12  Score=117.50  Aligned_cols=159  Identities=18%  Similarity=0.146  Sum_probs=80.0

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      .+.|+|+|.||+|||||+|+|+    +.+.+++.+.+|.|++.....+...+  .. ..++|+ +|....  ...+.+.+
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~----~~~~~~v~~~~g~T~d~~~~~~~~~~--~~-~~l~DT-~G~~~~--~~~~~~~~   72 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIA----GERISIVEDTPGVTRDRIYSSAEWLN--YD-FNLIDT-GGIDIG--DEPFLAQI   72 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHE----EEECC-----------CEEEECTTCS--SC-CEEEC------------CHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHh----CCCceeecCCCCCccceEEEEEEECC--ce-EEEEEC-CCCCCc--chhHHHHH
Confidence            4789999999999999999999    66777788888876654433333322  11 246777 443211  11133333


Q ss_pred             HHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          112 EQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       112 ~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ...... ...+|.+++-.++.........  .+...+.. ..    ++.++|+||+|+.+....             .  
T Consensus        73 ~~~~~~~~~~ad~il~vvD~~~~~~~~d~--~~~~~l~~-~~----~pvilv~NK~D~~~~~~~-------------~--  130 (436)
T 2hjg_A           73 RQQAEIAMDEADVIIFMVNGREGVTAADE--EVAKILYR-TK----KPVVLAVNKLDNTEMRAN-------------I--  130 (436)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHTT-CC----SCEEEEEECCCC-----C-------------C--
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCCHHHH--HHHHHHHH-cC----CCEEEEEECccCccchhh-------------H--
Confidence            333221 1467888875544322221111  11111211 11    458999999998754210             0  


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                            ..+...++.+++++||.+|.|+++|.+++...
T Consensus       131 ------~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~  162 (436)
T 2hjg_A          131 ------YDFYSLGFGEPYPISGTHGLGLGDLLDAVAEH  162 (436)
T ss_dssp             ------CSSGGGSSCCCEECBTTTTBTHHHHHHHHHHT
T ss_pred             ------HHHHHcCCCCeEEEeCcCCCChHHHHHHHHHh
Confidence                  01112344568899999999999999888654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.37  E-value=7.2e-13  Score=120.17  Aligned_cols=169  Identities=18%  Similarity=0.151  Sum_probs=84.7

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec-c--hhH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV-K--HSL  107 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~-~--~~~  107 (263)
                      ...-++++|.+|+|||||+|+|+    +.....+.+.+|+|++.....+...  +.. ..++|+ +|..-... .  -+.
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~----~~~~~~~~~~~gtT~d~~~~~~~~~--~~~-~~l~DT-~G~~~~~~~~~~~e~  245 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAML----GEERVIVSNVAGTTRDAVDTSFTYN--QQE-FVIVDT-AGMRKKGKVYETTEK  245 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHH----TSTTEEEC---------CCEEEEET--TEE-EEETTH-HHHTCBTTBCCCCSH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHh----CCCceeecCCCCceeeeeEEEEEEC--CeE-EEEEEC-CCcCcCccccchHHH
Confidence            34578899999999999999999    5555667777787654332222221  111 246676 33210000 0  011


Q ss_pred             HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      ...+..+. ....+|.+++-.+. .++....+..+. ..+..     .-.+.++|+||+|+.+..+.  ..+++.+.++.
T Consensus       246 ~~~~~~~~-~~~~ad~~llv~D~-~~~~s~~~~~~~-~~~~~-----~~~~iiiv~NK~Dl~~~~~~--~~~~~~~~~~~  315 (436)
T 2hjg_A          246 YSVLRALK-AIDRSEVVAVVLDG-EEGIIEQDKRIA-GYAHE-----AGKAVVIVVNKWDAVDKDES--TMKEFEENIRD  315 (436)
T ss_dssp             HHHHHHHH-HHHHCSEEEEEEET-TTCCCHHHHHHH-HHHHH-----TTCEEEEEEECGGGSCCCTT--HHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHhCCEEEEEEcC-CcCCcHHHHHHH-HHHHH-----cCCcEEEEEECccCCCcchH--HHHHHHHHHHH
Confidence            11222211 11346776663322 221111111111 11111     11458999999999876431  23455555554


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .....          ...+++++||++|.|++++.+.+..
T Consensus       316 ~l~~~----------~~~~~~~~SA~tg~~v~~l~~~i~~  345 (436)
T 2hjg_A          316 HFQFL----------DYAPILFMSALTKKRIHTLMPAIIK  345 (436)
T ss_dssp             HCGGG----------TTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred             hcccC----------CCCCEEEEecccCCCHHHHHHHHHH
Confidence            43211          2346789999999999999876653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.37  E-value=3.3e-13  Score=122.45  Aligned_cols=185  Identities=19%  Similarity=0.150  Sum_probs=95.5

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cc----h
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VK----H  105 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~----~  105 (263)
                      ...-++|+|+||||||||+|+|+    +....++.+.+|+|++.....+...+  .. ..++|+ +|.--.. ..    +
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~----g~~~~~v~~~~gtT~d~~~~~i~~~g--~~-~~l~Dt-~G~~~~~~~~~~~~e  250 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAIL----NKERALVSPIPGTTRDPVDDEVFIDG--RK-YVFVDT-AGLRRKSRVEPRTVE  250 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHH----TSTTEEECCCC------CCEEEEETT--EE-EEESSC-SCC-----------C
T ss_pred             cCceEEEECCCCCCHHHHHHHHh----CCcccccCCCCCCcCCceEEEEEECC--EE-EEEEEC-CCCccccccchhhHH
Confidence            34578999999999999999999    65557788888876554333333221  11 134565 3321000 00    0


Q ss_pred             h--HHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHH
Q 024744          106 S--LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEK  183 (263)
Q Consensus       106 ~--~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~  183 (263)
                      .  ....+. .+   ..+|.+++-.......... +. .+...+...     -.+.++|+||+|+.+..+  ...+++.+
T Consensus       251 ~~~~~~~~~-~i---~~ad~vllv~d~~~~~~~~-~~-~i~~~l~~~-----~~~~ilv~NK~Dl~~~~~--~~~~~~~~  317 (439)
T 1mky_A          251 KYSNYRVVD-SI---EKADVVVIVLDATQGITRQ-DQ-RMAGLMERR-----GRASVVVFNKWDLVVHRE--KRYDEFTK  317 (439)
T ss_dssp             CSCCHHHHH-HH---HHCSEEEEEEETTTCCCHH-HH-HHHHHHHHT-----TCEEEEEEECGGGSTTGG--GCHHHHHH
T ss_pred             HHHHHHHHH-HH---hhCCEEEEEEeCCCCCCHH-HH-HHHHHHHHc-----CCCEEEEEECccCCCchh--hHHHHHHH
Confidence            0  001111 11   2456666633221111111 10 001111110     134899999999987542  12455555


Q ss_pred             HHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEEEcCCCCCHHHHHhhhc
Q 024744          184 EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIA  262 (263)
Q Consensus       184 ~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~  262 (263)
                      .++.....          ....+++.+||++|.|+++|.+.+.....                ...+.+.++.|++||+
T Consensus       318 ~~~~~~~~----------~~~~~~~~~SA~~g~gv~~l~~~i~~~~~----------------~~~~~i~t~~ln~~l~  370 (439)
T 1mky_A          318 LFREKLYF----------IDYSPLIFTSADKGWNIDRMIDAMNLAYA----------------SYTTKVPSSAINSALQ  370 (439)
T ss_dssp             HHHHHCGG----------GTTSCEEECBTTTTBSHHHHHHHHHHHHH----------------HHTCCCCHHHHHHHHH
T ss_pred             HHHHHhcc----------CCCCcEEEEECCCCCCHHHHHHHHHHHHH----------------hhcccCCHHHHHHHHH
Confidence            55433221          12346788999999999999988764321                1134567778887775

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.37  E-value=7.4e-13  Score=107.62  Aligned_cols=186  Identities=16%  Similarity=0.203  Sum_probs=83.3

Q ss_pred             eEEEecceeEeCCcccCCCcc---eEEEEEEccCCCcHHHHHHHHHccCCCCe-EEEEecCCCcccccchhhhhcCCCCc
Q 024744           11 AVRIDETTHEFSNSHENDDVS---VGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGA   86 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~---~~vv~i~G~~gaGKSTLin~l~~~~~~~~-~~ii~~~~g~t~~~d~~~~~~~~~~~   86 (263)
                      ++++++++++|+. ..+.+..   -..++|+|++|||||||+|+|+    +.. .+.+.+..|++....  .+.... . 
T Consensus         3 ~l~~~~~~~~~~~-~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~----g~~~~~~~~~~~G~~~~~~--~~~~~~-~-   73 (210)
T 1pui_A            3 NLNYQQTHFVMSA-PDIRHLPSDTGIEVAFAGRSNAGKSSALNTLT----NQKSLARTSKTPGRTQLIN--LFEVAD-G-   73 (210)
T ss_dssp             --------CEEEE-SSGGGSSCSCSEEEEEEECTTSSHHHHHTTTC----CC-------------CCEE--EEEEET-T-
T ss_pred             chhhhhhhheeec-CCHhHCCCCCCcEEEEECCCCCCHHHHHHHHh----CCCccccccCCCccceeeE--EEEecC-C-
Confidence            5899999999984 4454432   2379999999999999999998    433 334455556532211  111101 1 


Q ss_pred             ceeeeeeecCcceEee----cchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEE
Q 024744           87 LVEEWVELANGCICCT----VKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVI  162 (263)
Q Consensus        87 ~~~~~~~l~~g~~~~~----~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iiv  162 (263)
                        ..++++ +|.....    .+..+...+.........++.+++..+ +.++....... +...+. ...    ++.+++
T Consensus        74 --~~l~Dt-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d-~~~~~~~~~~~-~~~~~~-~~~----~~~~~v  143 (210)
T 1pui_A           74 --KRLVDL-PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMD-IRHPLKDLDQQ-MIEWAV-DSN----IAVLVL  143 (210)
T ss_dssp             --EEEEEC-CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEE-TTSCCCHHHHH-HHHHHH-HTT----CCEEEE
T ss_pred             --EEEEEC-cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEE-CCCCCchhHHH-HHHHHH-HcC----CCeEEE
Confidence              235666 4431110    112233334444432245566555332 22221111100 001111 111    337788


Q ss_pred             EecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          163 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       163 lNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      .||+|+.+..+.....+.+++.++.  |..           .-..+++||+++.|++++.+++.+.
T Consensus       144 ~nK~D~~s~~~~~~~~~~~~~~~~~--~~~-----------~~~~~~~Sal~~~~~~~l~~~l~~~  196 (210)
T 1pui_A          144 LTKADKLASGARKAQLNMVREAVLA--FNG-----------DVQVETFSSLKKQGVDKLRQKLDTW  196 (210)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHGG--GCS-----------CEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EecccCCCchhHHHHHHHHHHHHHh--cCC-----------CCceEEEeecCCCCHHHHHHHHHHH
Confidence            9999998753110012233333322  110           1235679999999999999888754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.35  E-value=5.8e-13  Score=120.88  Aligned_cols=161  Identities=17%  Similarity=0.207  Sum_probs=80.2

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      +|.|+|+|.||+|||||+|+|+    +.+.+++.+.+|.|++.....+...+  ..+ .++|+ +|.... ....+.+.+
T Consensus         1 ~~~v~ivG~pnvGKStL~nrl~----~~~~~~v~~~~g~T~d~~~~~~~~~~--~~~-~l~DT-~G~~~~-~~~~~~~~~   71 (439)
T 1mky_A            1 MATVLIVGRPNVGKSTLFNKLV----KKKKAIVEDEEGVTRDPVQDTVEWYG--KTF-KLVDT-CGVFDN-PQDIISQKM   71 (439)
T ss_dssp             -CEEEEECCTTSSHHHHHHHHH----C--------------CCSEEEEEETT--EEE-EEEEC-TTTTSS-GGGCCCHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHh----CCCCceecCCCCCccceeeEEEEECC--eEE-EEEEC-CCcccc-ccchHHHHH
Confidence            3689999999999999999999    77778888888876654443333322  222 57787 443210 011122223


Q ss_pred             HHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          112 EQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       112 ~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ...... ...+|.+++-.++..........  +...+... .    ++.++|+||+|+.+..     .....   .... 
T Consensus        72 ~~~~~~~~~~ad~il~V~D~~~~~~~~d~~--i~~~l~~~-~----~p~ilv~NK~D~~~~~-----~~~~~---~~~~-  135 (439)
T 1mky_A           72 KEVTLNMIREADLVLFVVDGKRGITKEDES--LADFLRKS-T----VDTILVANKAENLREF-----EREVK---PELY-  135 (439)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTTCCCHHHHH--HHHHHHHH-T----CCEEEEEESCCSHHHH-----HHHTH---HHHG-
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCCHHHHH--HHHHHHHc-C----CCEEEEEeCCCCcccc-----HHHHH---HHHH-
Confidence            322211 25789988865543222221111  11111111 1    4489999999975320     01110   1111 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                ..++.+++++||.+|.|+++|.+++..
T Consensus       136 ----------~lg~~~~~~iSA~~g~gv~~L~~~i~~  162 (439)
T 1mky_A          136 ----------SLGFGEPIPVSAEHNINLDTMLETIIK  162 (439)
T ss_dssp             ----------GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred             ----------hcCCCCEEEEeccCCCCHHHHHHHHHH
Confidence                      113345789999999999999988754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.35  E-value=2.4e-13  Score=123.96  Aligned_cols=169  Identities=18%  Similarity=0.151  Sum_probs=89.6

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee---cchhH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT---VKHSL  107 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~---~~~~~  107 (263)
                      ...-++++|.+|+|||||+|+++    +.....+.+.+|+|.+.....+...  +.. ..++|+ +|..-..   ...+.
T Consensus       194 ~~~ki~ivG~~~vGKSslin~l~----~~~~~~~~~~~gtt~~~~~~~~~~~--~~~-~~l~DT-~G~~~~~~~~~~~e~  265 (456)
T 4dcu_A          194 EVIQFCLIGRPNVGKSSLVNAML----GEERVIVSNVAGTTRDAVDTSFTYN--QQE-FVIVDT-AGMRKKGKVYETTEK  265 (456)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHH----TSTTEEECC------CTTSEEEEET--TEE-EEETTG-GGTTTBTTBCCCCSH
T ss_pred             ccceeEEecCCCCCHHHHHHHHh----CCCccccCCCCCeEEEEEEEEEEEC--Cce-EEEEEC-CCCCcCcccchHHHH
Confidence            34578899999999999999999    5544677777887554332222222  111 246777 4421000   00111


Q ss_pred             HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      ...+..+. ....+|.+++-.+........... + ...+..    . -++.++|+||+|+.+..+  ...+++.+.++.
T Consensus       266 ~~~~~~~~-~~~~ad~~llviD~~~~~~~~~~~-~-~~~~~~----~-~~~~ilv~NK~Dl~~~~~--~~~~~~~~~~~~  335 (456)
T 4dcu_A          266 YSVLRALK-AIDRSEVVAVVLDGEEGIIEQDKR-I-AGYAHE----A-GKAVVIVVNKWDAVDKDE--STMKEFEENIRD  335 (456)
T ss_dssp             HHHHHHHH-HHHHCSEEEEEEETTTCCCHHHHH-H-HHHHHH----T-TCEEEEEEECGGGSCCCS--SHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHhhCCEEEEEEeCCCCcCHHHHH-H-HHHHHH----c-CCCEEEEEEChhcCCCch--HHHHHHHHHHHH
Confidence            12222221 113467766633321111111110 0 111111    1 145899999999987643  245667777766


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ..+..          ...+++++||++|.|++++..++..
T Consensus       336 ~~~~~----------~~~~~~~~SA~~g~gv~~l~~~i~~  365 (456)
T 4dcu_A          336 HFQFL----------DYAPILFMSALTKKRIHTLMPAIIK  365 (456)
T ss_dssp             HCGGG----------TTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred             hcccC----------CCCCEEEEcCCCCcCHHHHHHHHHH
Confidence            54321          3346889999999999999887754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.35  E-value=1.8e-12  Score=110.16  Aligned_cols=162  Identities=20%  Similarity=0.238  Sum_probs=92.2

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      ....++++|.+|||||||+|+|+    |.+. .+.+.+|.|.......+...+  .. ..++|+ +|..-.. .....+.
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~----g~~~-~~~~~~~~t~~~~~~~~~~~~--~~-~~l~Dt-pG~~~~~-~~~~~~~   71 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALT----GLRQ-HVGNWPGVTVEKKEGIMEYRE--KE-FLVVDL-PGIYSLT-AHSIDEL   71 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHH----TTCE-EEEECTTSSCEEEEEEEEETT--EE-EEEEEC-CCCSCCC-SSCHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHh----CCCc-ccCCCCCeEEEeeEEEEEECC--ce-EEEEeC-CCccccc-cCCHHHH
Confidence            34678999999999999999999    5544 556777765544333333221  11 257787 4432111 1112222


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      +.+.......+|.+++    +.|............++... .   .+|.++|+||+|+.+........+.+.+.+.    
T Consensus        72 ~~~~~~~~~~~d~vi~----v~D~~~~~~~~~~~~~~~~~-~---~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg----  139 (271)
T 3k53_A           72 IARNFILDGNADVIVD----IVDSTCLMRNLFLTLELFEM-E---VKNIILVLNKFDLLKKKGAKIDIKKMRKELG----  139 (271)
T ss_dssp             HHHHHHHTTCCSEEEE----EEEGGGHHHHHHHHHHHHHT-T---CCSEEEEEECHHHHHHHTCCCCHHHHHHHHS----
T ss_pred             HHHHhhhccCCcEEEE----EecCCcchhhHHHHHHHHhc-C---CCCEEEEEEChhcCcccccHHHHHHHHHHcC----
Confidence            2222222357899888    55554432221111111111 1   1448999999998654332223344444331    


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                       .             +++++||.+|.|++++.+++...
T Consensus       140 -~-------------~~~~~Sa~~g~gi~~l~~~i~~~  163 (271)
T 3k53_A          140 -V-------------PVIPTNAKKGEGVEELKRMIALM  163 (271)
T ss_dssp             -S-------------CEEECBGGGTBTHHHHHHHHHHH
T ss_pred             -C-------------cEEEEEeCCCCCHHHHHHHHHHH
Confidence             1             36789999999999999887643

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.34  E-value=1.5e-12  Score=110.82  Aligned_cols=156  Identities=20%  Similarity=0.220  Sum_probs=87.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecc-hhHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVK-HSLVQAL  111 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~-~~~~~~l  111 (263)
                      ..|+++|.||+|||||+|+|++.    + ..+.+.+|.|+......+..   +.. ..++|+ +|..  ... ....+.+
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~----~-~~v~~~pg~tv~~~~~~~~~---~~~-l~l~Dt-pG~~--~~~~~~~~e~v   71 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGH----N-QRVGNWPGVTVERKSGLVKK---NKD-LEIQDL-PGIY--SMSPYSPEAKV   71 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC----C-CCCCSSSCCCCSCEEEECTT---CTT-EEEEEC-CCCS--CSSCSSHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHCC----C-CcccCCCCCcEEEEEEEEec---CCe-EEEEEC-CCcC--ccCCCChHHHH
Confidence            46899999999999999999943    2 13455567655433322322   111 257788 4431  111 1112233


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      .+.......+|.+++    +.|............++.. ..    +|.++|+||+|+.+........+.+.+.+   +  
T Consensus        72 ~~~~~~~~~~d~vi~----V~D~t~~e~~~~~~~~l~~-~~----~p~ilv~NK~Dl~~~~~~~~~~~~l~~~l---g--  137 (272)
T 3b1v_A           72 ARDYLLSQRADSILN----VVDATNLERNLYLTTQLIE-TG----IPVTIALNMIDVLDGQGKKINVDKLSYHL---G--  137 (272)
T ss_dssp             HHHHHHTTCCSEEEE----EEEGGGHHHHHHHHHHHHH-TC----SCEEEEEECHHHHHHTTCCCCHHHHHHHH---T--
T ss_pred             HHHHHhcCCCCEEEE----EecCCchHhHHHHHHHHHh-cC----CCEEEEEEChhhCCcCCcHHHHHHHHHHc---C--
Confidence            222222246888887    4554443222111112221 11    45899999999865432222334443333   1  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +             +++++||++|.|++++..++..
T Consensus       138 ~-------------~vi~~SA~~g~gi~el~~~i~~  160 (272)
T 3b1v_A          138 V-------------PVVATSALKQTGVDQVVKKAAH  160 (272)
T ss_dssp             S-------------CEEECBTTTTBSHHHHHHHHHH
T ss_pred             C-------------CEEEEEccCCCCHHHHHHHHHH
Confidence            1             4788999999999999988765

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.32  E-value=3.7e-12  Score=107.61  Aligned_cols=159  Identities=16%  Similarity=0.167  Sum_probs=89.8

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ...++++|.+|+|||||+|+|+    +.+.. +.+.+|.|+......+...  +.. ..++|+ +|...... ....+.+
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~----g~~~~-~~~~pg~tv~~~~~~~~~~--~~~-~~l~Dt-pG~~~~~~-~~~~e~v   74 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALT----GTKQY-VANWPGVTVEKKEGVFTYK--GYT-INLIDL-PGTYSLGY-SSIDEKI   74 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHH----TTCEE-EEECTTSCCEEEEEEEEET--TEE-EEEEEC-CCCSSCCS-SSHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH----CCCCc-ccCCCCceEEEEEEEEEEC--CeE-EEEEEC-CCcCccCC-CCHHHHH
Confidence            4568999999999999999999    54443 5666776554433333321  111 257888 45321111 1112222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      .+.......+|.+++-.+. .++.....   ...++... .    +|.++|+||+|+.+........+.+.+.+   +  
T Consensus        75 ~~~~~~~~~~d~ii~V~D~-t~~~~~~~---~~~~l~~~-~----~pvilv~NK~Dl~~~~~i~~~~~~l~~~l---g--  140 (258)
T 3a1s_A           75 ARDYLLKGDADLVILVADS-VNPEQSLY---LLLEILEM-E----KKVILAMTAIDEAKKTGMKIDRYELQKHL---G--  140 (258)
T ss_dssp             HHHHHHHSCCSEEEEEEET-TSCHHHHH---HHHHHHTT-T----CCEEEEEECHHHHHHTTCCBCHHHHHHHH---C--
T ss_pred             HHHHHhhcCCCEEEEEeCC-CchhhHHH---HHHHHHhc-C----CCEEEEEECcCCCCccchHHHHHHHHHHc---C--
Confidence            2222222578888884332 22332211   11122221 1    45899999999875433222334443333   1  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .             +++++||++|.|++++.+++..
T Consensus       141 ~-------------~vi~~SA~~g~gi~el~~~i~~  163 (258)
T 3a1s_A          141 I-------------PVVFTSSVTGEGLEELKEKIVE  163 (258)
T ss_dssp             S-------------CEEECCTTTCTTHHHHHHHHHH
T ss_pred             C-------------CEEEEEeeCCcCHHHHHHHHHH
Confidence            1             4788999999999999988765

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.29  E-value=7.9e-12  Score=97.33  Aligned_cols=157  Identities=17%  Similarity=0.065  Sum_probs=71.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++++|.+|||||||+|+++    +..........|++....   +....... ...++|+ +|.      ..+......
T Consensus         4 ki~~vG~~~~GKSsli~~l~----~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~i~D~-~g~------~~~~~~~~~   68 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFG----GVEDGPEAEAAGHTYDRS---IVVDGEEA-SLMVYDI-WEQ------DGGRWLPGH   68 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHC----CC----------CEEEEE---EEETTEEE-EEEEEEC-C-----------------
T ss_pred             EEEEECCCCCCHHHHHHHHc----CccccCCCCccccceEEE---EEECCEEE-EEEEEEC-CCC------ccchhhhhh
Confidence            47899999999999999998    444444444445432211   11111111 1245666 332      111111111


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ..   ...|.+++-. .+.++..+.........+..... ..-+|.++|+||+|+.+..+.  ..+......+..+  + 
T Consensus        69 ~~---~~~~~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~-  138 (166)
T 3q72_A           69 CM---AMGDAYVIVY-SVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREV--SVDEGRACAVVFD--C-  138 (166)
T ss_dssp             -------CCEEEEEE-ETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCS--CHHHHHHHHHHTT--C-
T ss_pred             hh---hhCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEecccccccccc--CHHHHHHHHHHhC--C-
Confidence            21   3456655522 23445443222111111111111 112558999999999875432  2233333322221  1 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  +++.+||++|.|++++..++..
T Consensus       139 ------------~~~~~Sa~~~~gi~~l~~~l~~  160 (166)
T 3q72_A          139 ------------KFIETSAALHHNVQALFEGVVR  160 (166)
T ss_dssp             ------------EEEECBGGGTBSHHHHHHHHHH
T ss_pred             ------------cEEEeccCCCCCHHHHHHHHHH
Confidence                        4688999999999999888754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.29  E-value=1.7e-11  Score=103.18  Aligned_cols=46  Identities=22%  Similarity=0.309  Sum_probs=38.2

Q ss_pred             ccCCCcceEEEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCc
Q 024744           25 HENDDVSVGVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGE   70 (263)
Q Consensus        25 ~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~   70 (263)
                      +.-++.+.++++++|++|||||||++.|... ..|.+++++..|++.
T Consensus         7 ~~~~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~   53 (262)
T 1yrb_A            7 HHHHGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGV   53 (262)
T ss_dssp             CCCTTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSC
T ss_pred             cccCCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            4445678889999999999999999999642 258899999999875

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.27  E-value=7.8e-13  Score=116.09  Aligned_cols=163  Identities=18%  Similarity=0.146  Sum_probs=82.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEe--ecchhHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC--TVKHSLVQA  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~--~~~~~~~~~  110 (263)
                      +-|+|+|++|||||||+|+|+..    +.. +.+.+.+|.......+.... ... ..++|+ +|.+..  ..+......
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~----~~~-i~~~~ftTl~p~~g~v~~~~-~~~-~~l~Dt-PG~i~~a~~~~~l~~~f  230 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSA----KPK-IADYHFTTLVPNLGMVETDD-GRS-FVMADL-PGLIEGAHQGVGLGHQF  230 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEE----CCE-ESSTTSSCCCCCEEEEECSS-SCE-EEEEEH-HHHHHHTTCTTTTHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcC----CCc-cccCCccccCceEEEEEeCC-Cce-EEEecC-CCCcccccccchhHHHH
Confidence            45899999999999999999853    222 23444444443333333221 111 246676 443210  001111222


Q ss_pred             HHHHHHhccCCcEEEEcccCCCC---chhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          111 LEQLVQRKERLDHILLETTGLAN---PAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~---p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      ++.+    ...+.+++-.+. .+   ..++.+...+...+..+.....-+|.++|+||+|+.+..      +.+.+..+.
T Consensus       231 l~~i----~~~d~ll~VvD~-s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~------e~~~~l~~~  299 (342)
T 1lnz_A          231 LRHI----ERTRVIVHVIDM-SGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA------ENLEAFKEK  299 (342)
T ss_dssp             HHHH----HHCCEEEEEEES-SCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH------HHHHHHHHH
T ss_pred             HHHH----HhccEEEEEEEC-CcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH------HHHHHHHHH
Confidence            2222    245666553332 22   222221111112222211000114589999999998642      223222222


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +...             .+++.+||++++|+++|..++..
T Consensus       300 l~~~-------------~~v~~iSA~tg~gi~eL~~~l~~  326 (342)
T 1lnz_A          300 LTDD-------------YPVFPISAVTREGLRELLFEVAN  326 (342)
T ss_dssp             CCSC-------------CCBCCCSSCCSSTTHHHHHHHHH
T ss_pred             hhcC-------------CCEEEEECCCCcCHHHHHHHHHH
Confidence            2211             25789999999999999988764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.27  E-value=4e-12  Score=99.30  Aligned_cols=54  Identities=17%  Similarity=0.110  Sum_probs=36.5

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +|.++|+||+|+.+..+.  ..+...+..+..+  +             +++.+||++|.|++++..++..
T Consensus       110 ~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~-------------~~~~~Sa~~~~~v~~l~~~l~~  163 (169)
T 3q85_A          110 LPVILVGNKSDLARSREV--SLEEGRHLAGTLS--C-------------KHIETSAALHHNTRELFEGAVR  163 (169)
T ss_dssp             CCEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--C-------------EEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCEEEEeeCcchhhcccC--CHHHHHHHHHHcC--C-------------cEEEecCccCCCHHHHHHHHHH
Confidence            558999999999754432  2333333333321  1             4678999999999999887654

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.26  E-value=7e-12  Score=98.82  Aligned_cols=160  Identities=10%  Similarity=0.069  Sum_probs=79.4

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      ...-|+++|.+|||||||+|+|+..    +.. ....++.+.......+...+... ...++|+ +|.      ..+...
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~   74 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADN----TFS-GSYITTIGVDFKIRTVEINGEKV-KLQIWDT-AGQ------ERFRTI   74 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSC----C----CCTTTBSEEEEEEEEEETTEEE-EEEEEEE-TTG------GGCSSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcC----CCC-CccCCCceeEEEEEEEEECCEEE-EEEEEcC-CCc------hhhhhh
Confidence            3456889999999999999999843    222 12222211111111111111111 1246677 331      000000


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ....   ....|.+++-.+ +.++..+.........+....   .-++.++|+||+|+.+....  .........+..+ 
T Consensus        75 ~~~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~-  144 (181)
T 3tw8_B           75 TSTY---YRGTHGVIVVYD-VTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPERKVV--ETEDAYKFAGQMG-  144 (181)
T ss_dssp             CGGG---GTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT-
T ss_pred             HHHH---hccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchhccc--CHHHHHHHHHHcC-
Confidence            1111   135677777332 334443322111111111111   11457999999998765432  2233333333332 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                       +             +++.+||++|.|++++.+++..
T Consensus       145 -~-------------~~~~~Sa~~~~gi~~l~~~l~~  167 (181)
T 3tw8_B          145 -I-------------QLFETSAKENVNVEEMFNCITE  167 (181)
T ss_dssp             -C-------------CEEECBTTTTBSHHHHHHHHHH
T ss_pred             -C-------------eEEEEECCCCCCHHHHHHHHHH
Confidence             1             4678999999999999888764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.26  E-value=1.4e-12  Score=119.17  Aligned_cols=156  Identities=18%  Similarity=0.141  Sum_probs=72.5

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH--H
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL--E  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l--~  112 (263)
                      |+|+|.+|||||||+|+|+    +.+.+++.+.+|+|++.....+...+  .. ..++|+ +|.  .... +..+.+  .
T Consensus       236 V~ivG~~nvGKSSLln~L~----~~~~a~vs~~~gtT~d~~~~~i~~~g--~~-l~liDT-~G~--~~~~-~~ve~~gi~  304 (476)
T 3gee_A          236 TVIAGKPNAGKSTLLNTLL----GQERAIVSHMPGTTRDYIEECFIHDK--TM-FRLTDT-AGL--REAG-EEIEHEGIR  304 (476)
T ss_dssp             EEEECCTTSSHHHHHHHCC----------------------CEEEEETT--EE-EEEEC---------------------
T ss_pred             EEEECCCCCCHHHHHHHHh----CCCCcccCCCCCceEEEEEEEEEECC--eE-EEEEEC-CCC--Ccch-hHHHHHHHH
Confidence            8899999999999999999    66667788888876654433333321  11 246777 442  1111 111111  1


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHH---HHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLA---SVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~---~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      ........+|.+++-.+. .++....   ........+.       .++.++|+||+|+.+...    ...  +.+...+
T Consensus       305 ~~~~~~~~aD~vl~VvD~-s~~~s~~~~~~~~~~l~~l~-------~~piIvV~NK~Dl~~~~~----~~~--~~l~~~~  370 (476)
T 3gee_A          305 RSRMKMAEADLILYLLDL-GTERLDDELTEIRELKAAHP-------AAKFLTVANKLDRAANAD----ALI--RAIADGT  370 (476)
T ss_dssp             ---CCCSSCSEEEEEEET-TTCSSGGGHHHHHHHHHHCT-------TSEEEEEEECTTSCTTTH----HHH--HHHHHHH
T ss_pred             HHHhhcccCCEEEEEEEC-CCCcchhhhHHHHHHHHhcC-------CCCEEEEEECcCCCCccc----hhH--HHHHhcC
Confidence            222223578888884332 2222110   1111111111       145899999999987642    111  2233220


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                                    +.+++.+||++|.|+++|.+++....
T Consensus       371 --------------~~~~i~vSAktg~GI~eL~~~i~~~~  396 (476)
T 3gee_A          371 --------------GTEVIGISALNGDGIDTLKQHMGDLV  396 (476)
T ss_dssp             --------------TSCEEECBTTTTBSHHHHHHHHTHHH
T ss_pred             --------------CCceEEEEECCCCCHHHHHHHHHHHH
Confidence                          12468899999999999999887543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.26  E-value=3.2e-12  Score=101.02  Aligned_cols=157  Identities=20%  Similarity=0.243  Sum_probs=80.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH-HHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ-ALE  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~-~l~  112 (263)
                      -++|+|.+|||||||+|+|+.    .+...+.+.+++|.+.....+...  +.. ..++|+ +|..  .....+.. .+.
T Consensus         6 ki~ivG~~g~GKStLl~~l~~----~~~~~~~~~~~~t~~~~~~~~~~~--~~~-~~l~Dt-~G~~--~~~~~~~~~~~~   75 (172)
T 2gj8_A            6 KVVIAGRPNAGKSSLLNALAG----REAAIVTDIAGTTRDVLREHIHID--GMP-LHIIDT-AGLR--EASDEVERIGIE   75 (172)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT----SCCSCCCSSTTCCCSCEEEEEEET--TEE-EEEEEC-CCCS--CCSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhC----CCcceeeCCCCceeceeeEEEEEC--CeE-EEEEEC-CCcc--cchhHHHHHHHH
Confidence            578999999999999999994    333334455555443322222221  111 246676 4421  11111111 122


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ........+|.+++-.+.. ++.......+. ..+....  ..-+|.++|+||+|+.+...                   
T Consensus        76 ~~~~~~~~ad~~i~v~D~~-~~~s~~~~~~~-~~~~~~~--~~~~p~ilv~NK~Dl~~~~~-------------------  132 (172)
T 2gj8_A           76 RAWQEIEQADRVLFMVDGT-TTDAVDPAEIW-PEFIARL--PAKLPITVVRNKADITGETL-------------------  132 (172)
T ss_dssp             HHHHHHHTCSEEEEEEETT-TCCCCSHHHHC-HHHHHHS--CTTCCEEEEEECHHHHCCCC-------------------
T ss_pred             HHHHHHHhCCEEEEEEECC-CCCCHHHHHHH-HHHHHhc--ccCCCEEEEEECccCCcchh-------------------
Confidence            2222224678877744432 21111111111 1111111  01145899999999864320                   


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      ... ..    ...+++.+||++|.|++++..++.+.
T Consensus       133 ~~~-~~----~~~~~~~~SA~~g~gv~~l~~~l~~~  163 (172)
T 2gj8_A          133 GMS-EV----NGHALIRLSARTGEGVDVLRNHLKQS  163 (172)
T ss_dssp             EEE-EE----TTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             hhh-hc----cCCceEEEeCCCCCCHHHHHHHHHHH
Confidence            000 00    12357889999999999999888653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.25  E-value=5.6e-12  Score=99.49  Aligned_cols=158  Identities=13%  Similarity=0.090  Sum_probs=77.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      .-++++|.+|+|||||+|+++....    ......+.  .+.+..  .+...+... -..++|+ +|.      ..+...
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~~~----~~~~~~~t--~~~~~~~~~~~~~~~~~-~~~~~Dt-~G~------~~~~~~   76 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDGAF----LAGTFIST--VGIDFRNKVLDVDGVKV-KLQMWDT-AGQ------ERFRSV   76 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCC----CCCCCCCC--CSCEEEEEEEEETTEEE-EEEEEEC-CCC------------
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCC----CCCCcCCc--eeeEEEEEEEEECCEEE-EEEEEeC-CCc------HHHHHH
Confidence            3578999999999999999985421    10011111  222111  111111111 1245677 332      111111


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ....   ....|.+++-.+ +.++..+.........+.....  ..++.++|+||+|+.+..+.  ..+...+..+..+ 
T Consensus        77 ~~~~---~~~~d~ii~v~d-~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~-  147 (180)
T 2g6b_A           77 THAY---YRDAHALLLLYD-VTNKASFDNIQAWLTEIHEYAQ--HDVALMLLGNKVDSAHERVV--KREDGEKLAKEYG-  147 (180)
T ss_dssp             --CC---GGGCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECCSTTSCCCS--CHHHHHHHHHHHT-
T ss_pred             HHHH---ccCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhCC--CCCcEEEEEECcccCccccc--CHHHHHHHHHHcC-
Confidence            1111   146777777332 3333332211100011111111  12458999999999875432  2233333333322 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                       .             .++.+||++|.|++++..++..
T Consensus       148 -~-------------~~~~~Sa~~~~gi~~l~~~l~~  170 (180)
T 2g6b_A          148 -L-------------PFMETSAKTGLNVDLAFTAIAK  170 (180)
T ss_dssp             -C-------------CEEECCTTTCTTHHHHHHHHHH
T ss_pred             -C-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence             1             3678999999999999988764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.25  E-value=2.8e-11  Score=99.83  Aligned_cols=168  Identities=11%  Similarity=0.091  Sum_probs=80.7

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee--cchhH-
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--VKHSL-  107 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~--~~~~~-  107 (263)
                      ..+-|+|+|.+|||||||+|+|+    +.+.. ..+.+++|...........  .. -..++|+ +|..-..  .+..+ 
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~----~~~~~-~~~~~~~t~~~~~~~~~~~--~~-~~~l~Dt-pG~~~~~~~~~~~~~   98 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVS----RANVD-VQSYSFTTKNLYVGHFDHK--LN-KYQIIDT-PGLLDRAFENRNTIE   98 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHT----TTCEE-EECC-----CEEEEEEEET--TE-EEEEEEC-TTTTTSCGGGCCHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHh----CCCCc-cCCCCCcceeeeeeeeecC--CC-eEEEEEC-CCCcCcccchhhhHH
Confidence            45678999999999999999999    44444 3344444333322211111  11 1246787 4431111  01111 


Q ss_pred             HHHHHHHHHhccCCcEEEEcccCCCCchhH--HHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHH-HHHHH
Q 024744          108 VQALEQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLD-ELEKE  184 (263)
Q Consensus       108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~--~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~-~~~~~  184 (263)
                      ...+..+   ....|.+++-.+ +.++..+  .........+....   ..++.++|+||+|+.+..+...... .+.+.
T Consensus        99 ~~~~~~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~l~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  171 (228)
T 2qu8_A           99 MTTITAL---AHINGVILFIID-ISEQCGLTIKEQINLFYSIKSVF---SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQI  171 (228)
T ss_dssp             HHHHHHH---HTSSEEEEEEEE-TTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC--CCCHHHHHHHHHH
T ss_pred             HHHHHHh---hccccEEEEEEe-cccccCcchHHHHHHHHHHHHhh---cCCcEEEEEeCcccCCchhhHHHHHHHHHHH
Confidence            1223322   235566666332 2222111  11000011111110   1245899999999987643322211 22222


Q ss_pred             HHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          185 IHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       185 l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .+..++             ...++.+||++|.|++++..++..
T Consensus       172 ~~~~~~-------------~~~~~~~SA~~g~gi~~l~~~l~~  201 (228)
T 2qu8_A          172 LDNVKN-------------PIKFSSFSTLTGVGVEQAKITACE  201 (228)
T ss_dssp             HHHCCS-------------CEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHhcCC-------------CceEEEEecccCCCHHHHHHHHHH
Confidence            222211             125788999999999999988764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.25  E-value=2.2e-11  Score=95.47  Aligned_cols=161  Identities=16%  Similarity=0.118  Sum_probs=77.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-++++|.+|+|||||+|+++    +.+........|.+..  ...+...+... -..++|+ +|..  ..  . ...+.
T Consensus         5 ~ki~i~G~~~vGKSsl~~~l~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~D~-~g~~--~~--~-~~~~~   71 (175)
T 2nzj_A            5 YRVVLLGDPGVGKTSLASLFA----GKQERDLHEQLGEDVY--ERTLTVDGEDT-TLVVVDT-WEAE--KL--D-KSWSQ   71 (175)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH----CC-----CCCSSSSEE--EEEEEETTEEE-EEEEECC-C------------CHHH
T ss_pred             EEEEEECCCCccHHHHHHHHh----cCCCccccCcccccee--EEEEEECCEEE-EEEEEec-CCCC--cc--c-hhhhH
Confidence            458899999999999999999    4443333333443211  11111111111 1245666 3321  10  0 11222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...  ....|.+++-. .+.++..+.........+..... ..-+|.++|+||+|+.+..+.  ..+..+......+  .
T Consensus        72 ~~~--~~~~~~~i~v~-d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~  143 (175)
T 2nzj_A           72 ESC--LQGGSAYVIVY-SIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREV--SVEEGRACAVVFD--C  143 (175)
T ss_dssp             HHT--TTSCSEEEEEE-ETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCS--CHHHHHHHHHHHT--S
T ss_pred             Hhh--cccCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhcccccc--CHHHHHHHHHHcC--C
Confidence            221  13456665522 23344433222111111111101 112558999999999875432  1233333222221  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   +++.+||++|.|++++..++..
T Consensus       144 -------------~~~~~Sa~~g~gi~~l~~~l~~  165 (175)
T 2nzj_A          144 -------------KFIETSATLQHNVAELFEGVVR  165 (175)
T ss_dssp             -------------EEEECBTTTTBSHHHHHHHHHH
T ss_pred             -------------eEEEEecCCCCCHHHHHHHHHH
Confidence                         4678999999999999988764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.24  E-value=4.5e-12  Score=98.51  Aligned_cols=158  Identities=13%  Similarity=0.092  Sum_probs=79.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      .-++++|.+|+|||||+|+++...    .  ......+ ..... ..+...+.. .-..++|+ +|.      ..+....
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~~----~--~~~~~~t-~~~~~~~~~~~~~~~-~~~~l~D~-~G~------~~~~~~~   69 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYDE----F--VEDYEPT-KADSYRKKVVLDGEE-VQIDILDT-AGQ------EDYAAIR   69 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC----C--CSCCCTT-CCEEEEEEEEETTEE-EEEEEEEC-CC---------CHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc----c--CCCCCCC-cceEEEEEEEECCEE-EEEEEEEC-CCc------chhHHHH
Confidence            357899999999999999998532    1  0111111 11110 001111111 11246777 442      1122222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ....   ...|.+++-.+ +.++..+.........+...... ..++.++|+||+|+.+..+.  ..++..+..+..+  
T Consensus        70 ~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--  140 (168)
T 1u8z_A           70 DNYF---RSGEGFLCVFS-ITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQV--SVEEAKNRADQWN--  140 (168)
T ss_dssp             HHHH---HHCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--
T ss_pred             HHHh---hcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCcc--CHHHHHHHHHHcC--
Confidence            3332   24566666222 33444332211111111111110 11458999999999765432  2344555544432  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .             +++.+||++|.|++++..++..
T Consensus       141 ~-------------~~~~~Sa~~~~gi~~l~~~l~~  163 (168)
T 1u8z_A          141 V-------------NYVETSAKTRANVDKVFFDLMR  163 (168)
T ss_dssp             C-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             C-------------eEEEeCCCCCCCHHHHHHHHHH
Confidence            1             4688999999999999988754

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.24  E-value=1.9e-11  Score=98.11  Aligned_cols=157  Identities=13%  Similarity=0.102  Sum_probs=77.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      -|+|+|.+|+|||||+|+|+..    +... ...+.  .+.+.  ..+...+... -..++|+ +|.      ..+....
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~----~~~~-~~~~t--~~~~~~~~~~~~~~~~~-~l~l~Dt-~G~------~~~~~~~   92 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD----TFCE-ACKST--VGVDFKIKTVELRGKKI-RLQIWDT-AGQ------ERFNSIT   92 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-------------CC--TTEEEEEEEEEETTEEE-EEEEEEE-CCS------GGGHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC----CCCc-CCCCc--cceeEEEEEEEECCeEE-EEEEEeC-CCc------HHHHHHH
Confidence            5789999999999999999843    2211 11111  11111  1111111111 1246777 331      2233333


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ...+   ...|.+++-.+ +.++..+.........+....  ...++.++|+||+|+.+..+.  ..+..++..+.+ ..
T Consensus        93 ~~~~---~~~d~iilV~D-~~~~~s~~~~~~~~~~i~~~~--~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~-~~  163 (192)
T 2il1_A           93 SAYY---RSAKGIILVYD-ITKKETFDDLPKWMKMIDKYA--SEDAELLLVGNKLDCETDREI--TRQQGEKFAQQI-TG  163 (192)
T ss_dssp             HHHH---HHCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTS-TT
T ss_pred             HHHh---cCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccccccc--CHHHHHHHHHhc-CC
Confidence            3333   25677777332 333333222110011111110  112458999999999765422  223333333322 11


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   ..++.+||++|.|++++..++..
T Consensus       164 -------------~~~~~~SA~~g~gi~~l~~~l~~  186 (192)
T 2il1_A          164 -------------MRFCEASAKDNFNVDEIFLKLVD  186 (192)
T ss_dssp             -------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             -------------CeEEEEeCCCCCCHHHHHHHHHH
Confidence                         24678999999999999988754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.24  E-value=6.6e-12  Score=107.71  Aligned_cols=83  Identities=10%  Similarity=0.066  Sum_probs=48.4

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc--cCCCC
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ--YKSSQ  234 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~--~~~~~  234 (263)
                      .+.++|+||+|+.+....      ..+.++.....        ...++.+++++||++|.|++++.+++..+.  +++.+
T Consensus       193 ~~~i~V~NK~Dl~~~~~~------~~~~~~~~~~~--------~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~~~~~  258 (299)
T 2aka_B          193 QRTIGVITKLDLMDEGTD------ARDVLENKLLP--------LRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHP  258 (299)
T ss_dssp             SSEEEEEECGGGSCTTCC------CHHHHTTCSSC--------CTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHHHHCT
T ss_pred             CeEEEEEEccccCCCCch------HHHHHhCCcCc--------CCCCcEEEECCChhhccccccHHHHHHHHHHHHhcCC
Confidence            348999999999876421      11222211000        011344688999999999999998877532  22222


Q ss_pred             CCCCCCEEEEEEEcCCCCCHHHHHhhhc
Q 024744          235 NLHDNNVRTLSICEPLAVNLDKVILQIA  262 (263)
Q Consensus       235 ~~~~~~i~~~~~~~~~~~~~~~l~~~l~  262 (263)
                      ...+         .+..+.+..+..||+
T Consensus       259 ~~~~---------~~~r~~~~~l~~~l~  277 (299)
T 2aka_B          259 SYRH---------LADRMGTPYLQKVLN  277 (299)
T ss_dssp             TTGG---------GGGGCSHHHHHHHHH
T ss_pred             cccc---------chhhhCHHHHHHHHH
Confidence            2221         134566677777765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.24  E-value=5.8e-12  Score=98.64  Aligned_cols=159  Identities=19%  Similarity=0.131  Sum_probs=77.2

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ...++++|++|||||||+|+|++...     .+.+.++.|+......+...  +.. ..++|+ +|..-... ....+.+
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~-----~~~~~~~~t~~~~~~~~~~~--~~~-l~i~Dt-~G~~~~~~-~~~~~~~   72 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENV-----YIGNWPGVTVEKKEGEFEYN--GEK-FKVVDL-PGVYSLTA-NSIDEII   72 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSS-----SCC-----CCCCCEEEEEET--TEE-EEEEEC-CCCSCSSS-SSHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCe-----eccCCCCcceeeeEEEEEEC--CcE-EEEEEC-CCcccCCC-cchhHHH
Confidence            35789999999999999999995321     01122333222221112111  111 246777 44211110 1111222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      .....+...+|.+++-.+ ..+......  +. ..+... .    +|.++|.||+|+.+........+.+.+.+   +  
T Consensus        73 ~~~~~~~~~~~~~i~v~D-~~~~~~~~~--~~-~~~~~~-~----~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~---~--  138 (165)
T 2wji_A           73 ARDYIINEKPDLVVNIVD-ATALERNLY--LT-LQLMEM-G----ANLLLALNKMDLAKSLGIEIDVDKLEKIL---G--  138 (165)
T ss_dssp             HHHHHHHHCCSEEEEEEE-TTCHHHHHH--HH-HHHHHT-T----CCEEEEEECHHHHHHTTCCCCHHHHHHHH---T--
T ss_pred             HHHHHhcCCCCEEEEEec-CCchhHhHH--HH-HHHHhc-C----CCEEEEEEchHhccccChhhHHHHHHHHh---C--
Confidence            222211236788777322 222222211  11 111111 1    45899999999864322111123332222   1  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .             +++.+||++|.|++++..++..
T Consensus       139 ~-------------~~~~~SA~~~~~v~~l~~~l~~  161 (165)
T 2wji_A          139 V-------------KVVPLSAAKKMGIEELKKAISI  161 (165)
T ss_dssp             S-------------CEEECBGGGTBSHHHHHHHHHH
T ss_pred             C-------------CEEEEEcCCCCCHHHHHHHHHH
Confidence            1             3678999999999999888754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.23  E-value=9.9e-12  Score=100.32  Aligned_cols=162  Identities=14%  Similarity=0.130  Sum_probs=82.1

Q ss_pred             CcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhH
Q 024744           29 DVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (263)
Q Consensus        29 ~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~  107 (263)
                      .....-|+|+|.+|||||||+|+++....      .....++ .... ...+...+.. .-..++|+ +|.      ..+
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~------~~~~~~t-~~~~~~~~~~~~~~~-~~~~l~Dt-~G~------~~~   75 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEF------VEDYEPT-KADSYRKKVVLDGEE-VQIDILDT-AGQ------EDY   75 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCC------CTTCCTT-CCEEEEEEEEETTEE-EEEEEEEC-CCT------TCC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCC------CCCCCCc-cceEEEEEEEECCEE-EEEEEEcC-CCh------hhh
Confidence            34556789999999999999999985320      1111111 1111 0011111111 11246777 332      122


Q ss_pred             HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      .........   ..|.+++-. .+.++..+.........+..... ...++.++|+||+|+.+..+.  ..+.+.+..+.
T Consensus        76 ~~~~~~~~~---~~~~~i~v~-d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~  148 (206)
T 2bov_A           76 AAIRDNYFR---SGEGFLCVF-SITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQ  148 (206)
T ss_dssp             HHHHHHHHH---HCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHH
T ss_pred             HHHHHHHHh---hCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccc--cHHHHHHHHHH
Confidence            222333332   456666622 23344333221110111111110 012458999999999865422  23455555544


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .+  .             +++.+||++|.|++++..++..
T Consensus       149 ~~--~-------------~~~~~Sa~~g~gi~~l~~~l~~  173 (206)
T 2bov_A          149 WN--V-------------NYVETSAKTRANVDKVFFDLMR  173 (206)
T ss_dssp             HT--C-------------EEEEECTTTCTTHHHHHHHHHH
T ss_pred             hC--C-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence            32  1             3678999999999999888753

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.23  E-value=7.4e-12  Score=110.61  Aligned_cols=163  Identities=17%  Similarity=0.230  Sum_probs=83.0

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec--chhHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV--KHSLV  108 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~--~~~~~  108 (263)
                      ..+.++++|++|||||||+|+|+.    ... .+.+.+++|.......+...  +. ...++|+ +|......  .....
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~----~~~-~~~~~~~~t~~~~~~~~~~~--~~-~~~l~Dt-~G~~~~~~~~~~~~~  236 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTT----AKP-EIASYPFTTRGINVGQFEDG--YF-RYQIIDT-PGLLDRPISERNEIE  236 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCS----SCC-EEECCTTCSSCEEEEEEEET--TE-EEEEEEC-TTTSSSCSTTSCHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC----CCC-ccCCCCCeeeceeEEEEEec--Cc-eEEEEeC-CCccccchhhhhHHH
Confidence            456899999999999999999994    332 23344444343322222111  11 1246777 44321111  11111


Q ss_pred             HHHHHHHHhccCCcEEEEcccCCCCch--hHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 024744          109 QALEQLVQRKERLDHILLETTGLANPA--PLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIH  186 (263)
Q Consensus       109 ~~l~~~~~~~~~~d~ilie~~G~~~p~--~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~  186 (263)
                        ...+......+|.+++-.+ +.++.  ...........+.....   -++.++|+||+|+.+..    .++.+.+.++
T Consensus       237 --~~~~~~~~~~ad~illV~D-~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~~----~~~~~~~~~~  306 (357)
T 2e87_A          237 --KQAILALRYLGNLIIYIFD-PSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADEE----NIKRLEKFVK  306 (357)
T ss_dssp             --HHHHHGGGGTCSEEEEEEC-TTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCHH----HHHHHHHHHH
T ss_pred             --HHHHHHHHhcCCEEEEEEe-CCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCChH----HHHHHHHHHH
Confidence              1112122235677666332 12221  11111100111111110   14589999999998653    2333333333


Q ss_pred             hhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          187 EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       187 ~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ..+               .+++.+||++|+|++++.+++.+
T Consensus       307 ~~~---------------~~~~~iSA~~g~gi~~l~~~i~~  332 (357)
T 2e87_A          307 EKG---------------LNPIKISALKGTGIDLVKEEIIK  332 (357)
T ss_dssp             HTT---------------CCCEECBTTTTBTHHHHHHHHHH
T ss_pred             hcC---------------CCeEEEeCCCCcCHHHHHHHHHH
Confidence            211               14788999999999999988764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.23  E-value=8.3e-12  Score=98.91  Aligned_cols=160  Identities=13%  Similarity=0.118  Sum_probs=81.0

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ...-|+++|.+|+|||||+|+|+...    .  ......+ ..... ..+...+.. .-..++|+ +|.      ..+..
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~~----~--~~~~~~t-~~~~~~~~~~~~~~~-~~~~l~Dt-~G~------~~~~~   81 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYDE----F--VEDYEPT-KADSYRKKVVLDGEE-VQIDILDT-AGQ------EDYAA   81 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSC----C--CCSCCTT-CCEEEEEEEEETTEE-EEEEEEEC-CCT------TCCHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCC----C--CCcCCCc-cceEEEEEEEECCEE-EEEEEEEC-CCC------cccHH
Confidence            34568899999999999999998532    1  1111111 11110 001111111 11246777 332      12222


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      .....+.   ..|.+++-.+ +.++..+.........+..... ...++.++|+||+|+.+..+.  ..+++++..+..+
T Consensus        82 ~~~~~~~---~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~  154 (187)
T 2a9k_A           82 IRDNYFR---SGEGFLCVFS-ITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQV--SVEEAKNRAEQWN  154 (187)
T ss_dssp             HHHHHHH---HCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHHC-CTTCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTT
T ss_pred             HHHHHhc---cCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccCcc--CHHHHHHHHHHcC
Confidence            3333332   4566666222 3344333221111111111111 011458999999999765322  2345555554432


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                        .             +++.+||++|.|++++..++..
T Consensus       155 --~-------------~~~~~Sa~~~~gi~~l~~~l~~  177 (187)
T 2a9k_A          155 --V-------------NYVETSAKTRANVDKVFFDLMR  177 (187)
T ss_dssp             --C-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             --C-------------eEEEeCCCCCCCHHHHHHHHHH
Confidence              1             4678999999999999988764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.22  E-value=8.1e-12  Score=98.26  Aligned_cols=158  Identities=16%  Similarity=0.091  Sum_probs=80.4

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc--hhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE--RAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d--~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ..-++++|.+|+|||||+|+++.....      .....+ .+.+  ...+...+... -..++|+ +|.      ..+..
T Consensus        15 ~~~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~~~~   79 (179)
T 1z0f_A           15 IFKYIIIGDMGVGKSCLLHQFTEKKFM------ADCPHT-IGVEFGTRIIEVSGQKI-KLQIWDT-AGQ------ERFRA   79 (179)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCC------SSCTTS-CCCCEEEEEEEETTEEE-EEEEEEC-TTG------GGTCH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCC------CCCCCc-cceEEEEEEEEECCeEE-EEEEEEC-CCC------hHhhh
Confidence            456889999999999999999853210      111111 1111  11111111111 1246677 342      12222


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      .....+   ...|.+++-.+ +.++............+.....  .-++.++|+||+|+.+..+.  ..+++++..+..+
T Consensus        80 ~~~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~  151 (179)
T 1z0f_A           80 VTRSYY---RGAAGALMVYD-ITRRSTYNHLSSWLTDARNLTN--PNTVIILIGNKADLEAQRDV--TYEEAKQFAEENG  151 (179)
T ss_dssp             HHHHHH---HTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT
T ss_pred             hHHHHh---ccCCEEEEEEe-CcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccccccc--CHHHHHHHHHHcC
Confidence            233333   35677777333 3333322211100011111100  11458999999999764322  2344555444332


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                        .             .++.+||++|.|++++..++.+
T Consensus       152 --~-------------~~~~~Sa~~~~gi~~l~~~l~~  174 (179)
T 1z0f_A          152 --L-------------LFLEASAKTGENVEDAFLEAAK  174 (179)
T ss_dssp             --C-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             --C-------------EEEEEeCCCCCCHHHHHHHHHH
Confidence              1             4678999999999999887754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.22  E-value=6.2e-11  Score=94.23  Aligned_cols=158  Identities=18%  Similarity=0.212  Sum_probs=82.7

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ..-++++|.+|||||||+++++.    .......+..|.+.    ..+...  ... ..++|+ +|.      ..+....
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~----~~~~~~~~t~g~~~----~~~~~~--~~~-l~i~Dt-~G~------~~~~~~~   77 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLAS----EDISHITPTQGFNI----KSVQSQ--GFK-LNVWDI-GGQ------RKIRPYW   77 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCC----SCCEEEEEETTEEE----EEEEET--TEE-EEEEEC-SSC------GGGHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHhc----CCCCcccCcCCeEE----EEEEEC--CEE-EEEEEC-CCC------HHHHHHH
Confidence            35688999999999999999984    33333344334211    111111  111 246777 332      1222222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ....   ...|.+++-.+ +.++..+.... ++...+... .. ..+|.++|.||+|+.+...    .+++.+.+.... 
T Consensus        78 ~~~~---~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~-  146 (181)
T 1fzq_A           78 RSYF---ENTDILIYVID-SADRKRFEETGQELTELLEEE-KL-SCVPVLIFANKQDLLTAAP----ASEIAEGLNLHT-  146 (181)
T ss_dssp             HHHH---TTCSEEEEEEE-TTCGGGHHHHHHHHHHHTTCG-GG-TTCCEEEEEECTTSTTCCC----HHHHHHHTTGGG-
T ss_pred             HHHh---CCCCEEEEEEE-CcCHHHHHHHHHHHHHHHhCh-hh-cCCCEEEEEECcCcccCCC----HHHHHHHhCchh-
Confidence            2222   36787777333 33443332211 111111110 01 1145899999999987542    234444332110 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                       +       .. ..-.++.+||++|.|++++.+++..
T Consensus       147 -~-------~~-~~~~~~~~Sa~~g~gi~~l~~~l~~  174 (181)
T 1fzq_A          147 -I-------RD-RVWQIQSCSALTGEGVQDGMNWVCK  174 (181)
T ss_dssp             -C-------CS-SCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             -c-------cC-CceEEEEccCCCCCCHHHHHHHHHH
Confidence             0       00 0124788999999999999988765

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.22  E-value=1.5e-11  Score=98.44  Aligned_cols=159  Identities=12%  Similarity=0.071  Sum_probs=79.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-|+|+|.+|||||||+|+|+......     ...++.+.......+...+... ...++|+ +|.      ..+.....
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~~   83 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADDTYTE-----SYISTIGVDFKIRTIELDGKTI-KLQIWDT-AGQ------ERFRTITS   83 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCS-----CCCCCSSEEEEEEEEEETTEEE-EEEEEEE-CCS------GGGCTTHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCC-----CCCCcccceEEEEEEEECCEEE-EEEEEEC-CCc------HhhhhhHH
Confidence            468899999999999999998542110     1111111111111111111111 1246777 332      11112222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..+   ...|.+++-.+ +.++..+.........+.....  .-++.++|+||+|+.+....  ..+......+..+  +
T Consensus        84 ~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~  153 (196)
T 3tkl_A           84 SYY---RGAHGIIVVYD-VTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVV--DYTTAKEFADSLG--I  153 (196)
T ss_dssp             HHH---TTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--C
T ss_pred             HHH---hhCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECccccccccc--CHHHHHHHHHHcC--C
Confidence            222   35777777322 3334332211100111111111  12458999999999876532  2233333333332  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   +++.+||++|.|++++..++..
T Consensus       154 -------------~~~~~Sa~~g~gv~~l~~~l~~  175 (196)
T 3tkl_A          154 -------------PFLETSAKNATNVEQSFMTMAA  175 (196)
T ss_dssp             -------------CEEEECTTTCTTHHHHHHHHHH
T ss_pred             -------------cEEEEeCCCCCCHHHHHHHHHH
Confidence                         4678999999999999887764

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.21  E-value=1e-11  Score=99.01  Aligned_cols=160  Identities=12%  Similarity=0.102  Sum_probs=81.9

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ..-|+++|.+|||||||+|+++..    +..-..+.    .+.....+...  +.. ..++|+ +|.  ...+    ...
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~~----~~~~~~~t----~~~~~~~~~~~--~~~-~~i~Dt-~G~--~~~~----~~~   77 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSMN----EVVHTSPT----IGSNVEEIVIN--NTR-FLMWDI-GGQ--ESLR----SSW   77 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT----SCEEEECC----SCSSCEEEEET--TEE-EEEEEC-CC------C----GGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC----CCCcCcCC----CccceEEEEEC--CEE-EEEEEC-CCC--HhHH----HHH
Confidence            356889999999999999999942    22222222    22221112111  111 256777 442  1111    111


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ....   ...|.+++-.+ +.++..+.... ++...+... .. ...+.++|+||+|+.+..    ..+++.+.+.... 
T Consensus        78 ~~~~---~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~-  146 (187)
T 1zj6_A           78 NTYY---TNTEFVIVVVD-STDRERISVTREELYKMLAHE-DL-RKAGLLIFANKQDVKECM----TVAEISQFLKLTS-  146 (187)
T ss_dssp             HHHH---TTCCEEEEEEE-TTCTTTHHHHHHHHHHHHTSG-GG-TTCEEEEEEECTTSTTCC----CHHHHHHHHTGGG-
T ss_pred             HHHh---cCCCEEEEEEe-CCCHHHHHHHHHHHHHHHhch-hh-CCCeEEEEEECCCCcCCC----CHHHHHHHhChhh-
Confidence            2222   36788777333 33332222111 111111110 00 115589999999998653    2344555443210 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                       +       ...+ -.++.+||++|.|++++.+++.+..
T Consensus       147 -~-------~~~~-~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (187)
T 1zj6_A          147 -I-------KDHQ-WHIQACCALTGEGLCQGLEWMMSRL  176 (187)
T ss_dssp             -C-------CSSC-EEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             -h-------cCCC-cEEEEccCCCCcCHHHHHHHHHHHH
Confidence             0       0001 1578899999999999999887543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.21  E-value=1e-11  Score=99.25  Aligned_cols=159  Identities=18%  Similarity=0.193  Sum_probs=81.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-|+|+|.+|+|||||+|+++.....       .....|.+.+...+...  ... ..++|+ +|.      ..+.....
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~--~~~-~~l~Dt-~G~------~~~~~~~~   85 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASGQFN-------EDMIPTVGFNMRKITKG--NVT-IKLWDI-GGQ------PRFRSMWE   85 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC-------CSCCCCCSEEEEEEEET--TEE-EEEEEE-CCS------HHHHTTHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHcCCCC-------CccCCCCceeEEEEEeC--CEE-EEEEEC-CCC------HhHHHHHH
Confidence            35789999999999999999853211       01111122222212211  111 256777 432      22222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ..+   ..+|.+++-.+ +.++..+.... ++...+... .. .-++.++|+||+|+.+...    .+++.+.+......
T Consensus        86 ~~~---~~~d~ii~v~D-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~NK~Dl~~~~~----~~~~~~~~~~~~~~  155 (188)
T 1zd9_A           86 RYC---RGVSAIVYMVD-AADQEKIEASKNELHNLLDKP-QL-QGIPVLVLGNKRDLPGALD----EKELIEKMNLSAIQ  155 (188)
T ss_dssp             HHH---TTCSEEEEEEE-TTCGGGHHHHHHHHHHHHTCG-GG-TTCCEEEEEECTTSTTCCC----HHHHHHHTTGGGCC
T ss_pred             HHH---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHhCc-cc-CCCCEEEEEECCCCccCCC----HHHHHHHhChhhhc
Confidence            222   46788777333 33333332211 111111110 00 1145899999999987532    23343333211100


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                               . ....++.+||++|.|++++.+++...
T Consensus       156 ---------~-~~~~~~~~SA~~g~gv~~l~~~l~~~  182 (188)
T 1zd9_A          156 ---------D-REICCYSISCKEKDNIDITLQWLIQH  182 (188)
T ss_dssp             ---------S-SCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             ---------c-CCeeEEEEECCCCCCHHHHHHHHHHH
Confidence                     0 11246789999999999999888653

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.21  E-value=3.2e-11  Score=94.11  Aligned_cols=55  Identities=18%  Similarity=0.074  Sum_probs=36.8

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      ++.++|+||+|+.+..+.  .........+..+  .             +++.+||++|.|++++.+++...
T Consensus       110 ~pii~v~nK~Dl~~~~~v--~~~~~~~~~~~~~--~-------------~~~~~Sa~~~~gi~~l~~~l~~~  164 (172)
T 2erx_A          110 IPIMLVGNKCDESPSREV--QSSEAEALARTWK--C-------------AFMETSAKLNHNVKELFQELLNL  164 (172)
T ss_dssp             CCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--C-------------EEEECBTTTTBSHHHHHHHHHHT
T ss_pred             CCEEEEEEcccccccccc--CHHHHHHHHHHhC--C-------------eEEEecCCCCcCHHHHHHHHHHH
Confidence            458999999999765432  1222233222221  1             46789999999999999988653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.20  E-value=2.2e-11  Score=96.98  Aligned_cols=159  Identities=17%  Similarity=0.168  Sum_probs=80.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh---hhhcCCC-------C-cceeeeeeecCcceEe
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA---MINEGEG-------G-ALVEEWVELANGCICC  101 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~---~~~~~~~-------~-~~~~~~~~l~~g~~~~  101 (263)
                      .-|+|+|.+|+|||||+|+++.....       .....|.+.+..   .+.....       . .....++|+ +|.   
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~---   80 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDGKFN-------SKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDT-AGL---   80 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCC-------CSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEE-CCS---
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCCC-------cCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeC-CCc---
Confidence            46789999999999999999854210       000111111110   0110000       0 111256777 442   


Q ss_pred             ecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHH
Q 024744          102 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDEL  181 (263)
Q Consensus       102 ~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~  181 (263)
                         ..+.......   ...+|.+++-.+ +.++..+.........+..... ...++.++|+||+|+.+....  ..+.+
T Consensus        81 ---~~~~~~~~~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~--~~~~~  150 (195)
T 3bc1_A           81 ---ERFRSLTTAF---FRDAMGFLLLFD-LTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAV--KEEEA  150 (195)
T ss_dssp             ---GGGHHHHHHT---TTTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCS--CHHHH
T ss_pred             ---HHHHHHHHHH---HcCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccc--CHHHH
Confidence               2222222222   246788777332 3334333221110111111100 012458999999999764322  23444


Q ss_pred             HHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          182 EKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       182 ~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .+..+..+  .             +++.+||++|.|++++..++..
T Consensus       151 ~~~~~~~~--~-------------~~~~~Sa~~~~~v~~l~~~l~~  181 (195)
T 3bc1_A          151 RELAEKYG--I-------------PYFETSAANGTNISHAIEMLLD  181 (195)
T ss_dssp             HHHHHHHT--C-------------CEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHcC--C-------------CEEEEECCCCCCHHHHHHHHHH
Confidence            44443332  1             4688999999999999888764

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.20  E-value=2.7e-11  Score=96.18  Aligned_cols=157  Identities=14%  Similarity=0.097  Sum_probs=76.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++++|.+|||||||+|+|+....      .....+++.......+...+ ......++|+ +|.      ..+......
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~-~~~~~~i~Dt-~G~------~~~~~~~~~   71 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNHF------VDEYDPTIEDSYRKQVVIDG-ETCLLDILDT-AGQ------EEYSAMRDQ   71 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSSC------CCCCCTTCCEEEEEEEEETT-EEEEEEEEEC-CCC---------CTTHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCC------CCCCCCCchheEEEEEEECC-cEEEEEEEEC-CCc------HHHHHHHHH
Confidence            478999999999999999985321      11111221111111111111 1111245777 332      111112222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      .+.   ..|.+++-.+ +.++..+.........+..... ..-++.++|+||+|+.+....   .+......+..+  . 
T Consensus        72 ~~~---~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~---~~~~~~~~~~~~--~-  140 (189)
T 4dsu_A           72 YMR---TGEGFLCVFA-INNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRTVD---TKQAQDLARSYG--I-  140 (189)
T ss_dssp             HHH---HCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCSSC---HHHHHHHHHHHT--C-
T ss_pred             HHh---cCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccccC---HHHHHHHHHHcC--C-
Confidence            222   3555555222 3344332221111111111100 112458999999999865422   233333333332  1 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  +++.+||++|.|++++..++..
T Consensus       141 ------------~~~~~Sa~~g~gi~~l~~~l~~  162 (189)
T 4dsu_A          141 ------------PFIETSAKTRQGVDDAFYTLVR  162 (189)
T ss_dssp             ------------CEEECCTTTCTTHHHHHHHHHH
T ss_pred             ------------eEEEEeCCCCCCHHHHHHHHHH
Confidence                        3678999999999999888753

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.20  E-value=2.4e-11  Score=94.18  Aligned_cols=158  Identities=20%  Similarity=0.155  Sum_probs=76.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++++|.+|||||||+|+++.....      .....++.......+...+.. ....++|+ +|.      ..+......
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~l~D~-~G~------~~~~~~~~~   70 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGTFI------EKYDPTIEDFYRKEIEVDSSP-SVLEILDT-AGT------EQFASMRDL   70 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSCCC------SCCCTTCCEEEEEEEEETTEE-EEEEEEEC-CCT------TCCHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCc------ccCCCCcceeEEEEEEECCEE-EEEEEEEC-CCc------hhhHHHHHH
Confidence            5789999999999999999853210      000011000000111111111 11246777 331      122222333


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      .+.   ..|.+++-.+ +.++..+.........+..... ...++.++|+||+|+.+..+.  ..+...+..+..+  . 
T Consensus        71 ~~~---~~~~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~-  140 (167)
T 1kao_A           71 YIK---NGQGFILVYS-LVNQQSFQDIKPMRDQIIRVKR-YEKVPVILVGNKVDLESEREV--SSSEGRALAEEWG--C-  140 (167)
T ss_dssp             HHH---HCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHTT-TSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--S-
T ss_pred             Hhc---cCCEEEEEEe-CCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcccccccC--CHHHHHHHHHHhC--C-
Confidence            332   3466555222 3344332221111111111100 012458999999999765432  2233333333321  1 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  +++.+||++|.|++++.+++..
T Consensus       141 ------------~~~~~Sa~~~~gi~~l~~~l~~  162 (167)
T 1kao_A          141 ------------PFMETSAKSKTMVDELFAEIVR  162 (167)
T ss_dssp             ------------CEEEECTTCHHHHHHHHHHHHH
T ss_pred             ------------CEEEecCCCCcCHHHHHHHHHH
Confidence                        4678999999999999988754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.20  E-value=3.8e-11  Score=96.87  Aligned_cols=158  Identities=13%  Similarity=0.068  Sum_probs=79.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-|+|+|.+|+|||||+|+|+.......   .....|.  ......+....... -..++|+ +|.      ..+.....
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~--~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~~~~~~~   75 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADDSFTPA---FVSTVGI--DFKVKTIYRNDKRI-KLQIWDT-AGL------ERYRTITT   75 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTCCCCSC---CCCCCSE--EEEEEEEEETTEEE-EEEEEEE-CCS------GGGHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCC---cCCccce--eEEEEEEEECCeEE-EEEEEEC-CCc------hhhcchHH
Confidence            4578999999999999999995421000   0011111  11101111111111 1246777 332      12222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..   ....|.+++-.+ +.++..+.........+....  ....+.++|+||+|+.+....  ..+...+..+..+  .
T Consensus        76 ~~---~~~~d~ii~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~  145 (203)
T 1zbd_A           76 AY---YRGAMGFILMYD-ITNEESFNAVQDWSTQIKTYS--WDNAQVLLVGNKCDMEDERVV--SSERGRQLADHLG--F  145 (203)
T ss_dssp             TT---GGGCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHS--CSSCEEEEEEECTTCTTSCCS--CHHHHHHHHHHHT--C
T ss_pred             Hh---hcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCccccc--CHHHHHHHHHHCC--C
Confidence            11   245777777333 334433322111111121111  112458999999999875432  2334444433332  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                   +++.+||++|.|++++..++.
T Consensus       146 -------------~~~~~Sa~~~~gi~~l~~~l~  166 (203)
T 1zbd_A          146 -------------EFFEASAKDNINVKQTFERLV  166 (203)
T ss_dssp             -------------EEEECBTTTTBSSHHHHHHHH
T ss_pred             -------------eEEEEECCCCCCHHHHHHHHH
Confidence                         467899999999998888775

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.20  E-value=6.1e-11  Score=94.31  Aligned_cols=162  Identities=21%  Similarity=0.214  Sum_probs=84.5

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ++...++++|.+|||||||+|+|+.    .+. ...+.++.+.......+...  +.. ..++|+ +|..-.. .....+
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~----~~~-~~~~~~~~t~~~~~~~~~~~--~~~-~~l~Dt-~G~~~~~-~~~~~~   74 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTG----ENV-YIGNWPGVTVEKKEGEFEYN--GEK-FKVVDL-PGVYSLT-ANSIDE   74 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHT----TCE-EEEECTTSCCEEEEEEEEET--TEE-EEEEEC-CCCSCCS-SSSHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhC----CCc-cccCCCCeeccceEEEEEeC--CcE-EEEEEC-CCcCccc-cccHHH
Confidence            3456789999999999999999994    332 33444554333322222221  111 246777 4421111 011112


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      .+.........+|.+++    +.|.............+... .    .+.++|+||+|+.+........+.+.+.+   +
T Consensus        75 ~~~~~~~~~~~~~~~i~----v~d~~~~~~~~~~~~~~~~~-~----~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~  142 (188)
T 2wjg_A           75 IIARDYIINEKPDLVVN----IVDATALERNLYLTLQLMEM-G----ANLLLALNKMDLAKSLGIEIDVDKLEKIL---G  142 (188)
T ss_dssp             HHHHHHHHHHCCSEEEE----EEEGGGHHHHHHHHHHHHTT-T----CCEEEEEECHHHHHHTTCCCCHHHHHHHH---T
T ss_pred             HHHHHHHhccCCCEEEE----EecchhHHHHHHHHHHHHhc-C----CCEEEEEEhhhccccccchHHHHHHHHHh---C
Confidence            22222212235777776    44444322211111111111 1    44889999999865432212233333322   1


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                        .             .++.+||++|.|++++.+++...
T Consensus       143 --~-------------~~~~~Sa~~~~~v~~l~~~i~~~  166 (188)
T 2wjg_A          143 --V-------------KVVPLSAAKKMGIEELKKAISIA  166 (188)
T ss_dssp             --S-------------CEEECBGGGTBSHHHHHHHHHHH
T ss_pred             --C-------------CeEEEEecCCCCHHHHHHHHHHH
Confidence              1             46789999999999999887653

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.20  E-value=4.6e-11  Score=95.75  Aligned_cols=160  Identities=14%  Similarity=0.095  Sum_probs=81.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-|+|+|.+|+|||||+|+++......   ......|.+..  ...+....... -..++|+ +|.      ..+.....
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~~   90 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQDHFDH---NISPTIGASFM--TKTVPCGNELH-KFLIWDT-AGQ------ERFHSLAP   90 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHCCCCT---TCCCCSSEEEE--EEEEECSSSEE-EEEEEEE-CCS------GGGGGGTH
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCC---CcCCCcceeEE--EEEEEeCCEEE-EEEEEcC-CCc------hhhHhhhH
Confidence            358899999999999999998542110   01111221111  11111111111 1246777 331      11112222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..+   ...|.+++-.+ +.++..+.........+....  ...++.++|+||+|+.+..+.  ..+++++..+..+  .
T Consensus        91 ~~~---~~~d~iilV~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piiiv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~  160 (192)
T 2fg5_A           91 MYY---RGSAAAVIVYD-ITKQDSFYTLKKWVKELKEHG--PENIVMAIAGNKCDLSDIREV--PLKDAKEYAESIG--A  160 (192)
T ss_dssp             HHH---TTCSEEEEEEE-TTCTHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHTTT--C
T ss_pred             Hhh---ccCCEEEEEEe-CCCHHHHHHHHHHHHHHHHhC--CCCCcEEEEEECccccccccc--CHHHHHHHHHHcC--C
Confidence            222   35677777333 344443322111111111111  112458999999999754321  2344555444322  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                                   +++.+||++|.|++++..++...
T Consensus       161 -------------~~~~~Sa~~~~gi~~l~~~l~~~  183 (192)
T 2fg5_A          161 -------------IVVETSAKNAINIEELFQGISRQ  183 (192)
T ss_dssp             -------------EEEECBTTTTBSHHHHHHHHHHT
T ss_pred             -------------EEEEEeCCCCcCHHHHHHHHHHH
Confidence                         46889999999999999988653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.20  E-value=7e-12  Score=97.02  Aligned_cols=156  Identities=19%  Similarity=0.195  Sum_probs=74.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEe-ecchhHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC-TVKHSLVQAL  111 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~-~~~~~~~~~l  111 (263)
                      +-++++|.+|+|||||+|+++..    +.......++++.......+...  +.. ..++|+ +|.... .....+....
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~l~Dt-~G~~~~~~~~~~~~~~~   73 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK----RSAVVADVPGVTRDLKEGVVETD--RGR-FLLVDT-GGLWSGDKWEKKIQEKV   73 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC----CC-----------CCEEEEEEET--TEE-EEEEEC-GGGCSSSSCCHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC----CeeeccCCCCceecceEEEEEeC--Cce-EEEEEC-CCCCCccchHHHHHHHH
Confidence            56899999999999999999943    22333333443222221111111  111 246776 332110 0011122222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ...   ....|.+++-.+...........  ....+.. ..    ++.++|+||+|+.+..+   ...++   .      
T Consensus        74 ~~~---~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~-~~----~p~ilv~nK~Dl~~~~~---~~~~~---~------  131 (161)
T 2dyk_A           74 DRA---LEDAEVVLFAVDGRAELTQADYE--VAEYLRR-KG----KPVILVATKVDDPKHEL---YLGPL---Y------  131 (161)
T ss_dssp             HHH---TTTCSEEEEEEESSSCCCHHHHH--HHHHHHH-HT----CCEEEEEECCCSGGGGG---GCGGG---G------
T ss_pred             HHH---HHhCCEEEEEEECCCcccHhHHH--HHHHHHh-cC----CCEEEEEECcccccchH---hHHHH---H------
Confidence            222   24677777733322211111111  1111111 11    44899999999976521   01111   0      


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                               ..+...++.+||++|.|++++.+++.+
T Consensus       132 ---------~~~~~~~~~~Sa~~~~gv~~l~~~l~~  158 (161)
T 2dyk_A          132 ---------GLGFGDPIPTSSEHARGLEELLEAIWE  158 (161)
T ss_dssp             ---------GGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred             ---------hCCCCCeEEEecccCCChHHHHHHHHH
Confidence                     112335789999999999999988754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.20  E-value=3.3e-11  Score=98.30  Aligned_cols=166  Identities=16%  Similarity=0.078  Sum_probs=80.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCC-eEEEEecCCCc-ccccchhhhhcC-CC-CcceeeeeeecCcceEeecchhHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGK-RIAVILNEFGE-EIGVERAMINEG-EG-GALVEEWVELANGCICCTVKHSLV  108 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~-~~~ii~~~~g~-t~~~d~~~~~~~-~~-~~~~~~~~~l~~g~~~~~~~~~~~  108 (263)
                      .-|+|+|.+|+|||||+|+|+...... ....+..++.. .+.++....... .. ...-..++|++ |.      ..+.
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~-G~------~~~~   98 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTA-GQ------ERFR   98 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEE-SH------HHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECC-Cc------HhHH
Confidence            358899999999999999999642111 11111111110 001110000000 00 01112466763 31      2222


Q ss_pred             HHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744          109 QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI  188 (263)
Q Consensus       109 ~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~  188 (263)
                      ......+   ...|.+++-.+ +.++..+.........+..... ..-++.++|+||+|+.+....  ..+...+..+..
T Consensus        99 ~~~~~~~---~~~d~iilV~D-~~~~~s~~~~~~~l~~i~~~~~-~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~  171 (217)
T 2f7s_A           99 SLTTAFF---RDAMGFLLMFD-LTSQQSFLNVRNWMSQLQANAY-CENPDIVLIGNKADLPDQREV--NERQARELADKY  171 (217)
T ss_dssp             HHHHHHH---TTCCEEEEEEE-TTCHHHHHHHHHHHHTCCCCCT-TTCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHT
T ss_pred             hHHHHHh---cCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcC-cCCCCEEEEEECCcccccccc--CHHHHHHHHHHC
Confidence            2222222   46788777332 3334333222111111211110 012568999999999764322  223444443332


Q ss_pred             cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +  .             +++.+||++|.|++++..++..
T Consensus       172 ~--~-------------~~~~~Sa~~g~gi~~l~~~l~~  195 (217)
T 2f7s_A          172 G--I-------------PYFETSAATGQNVEKAVETLLD  195 (217)
T ss_dssp             T--C-------------CEEEEBTTTTBTHHHHHHHHHH
T ss_pred             C--C-------------cEEEEECCCCCCHHHHHHHHHH
Confidence            2  1             4678999999999999888763

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.19  E-value=2.3e-11  Score=98.49  Aligned_cols=158  Identities=17%  Similarity=0.160  Sum_probs=80.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      .-|+|+|.+|+|||||+|+++.....       .....|.+.+.  ..+...+... -..++|+ +|.      ..+...
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~-~l~i~Dt-~G~------~~~~~~   94 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKTGAFS-------ERQGSTIGVDFTMKTLEIQGKRV-KLQIWDT-AGQ------ERFRTI   94 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSCC-----------------CEEEEEEEETTEEE-EEEEECC-TTC------GGGHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhCCCC-------CCCCCCcceEEEEEEEEECCEEE-EEEEEEC-CCc------HhHHHH
Confidence            46889999999999999999853210       01111122211  1111111011 1246777 332      222222


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ....+   ...|.+++-.+ +.++..+.........+....  ..-++.++|+||+|+.+....  ..+++++..+..+ 
T Consensus        95 ~~~~~---~~~d~iilv~D-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~-  165 (201)
T 2hup_A           95 TQSYY---RSANGAILAYD-ITKRSSFLSVPHWIEDVRKYA--GSNIVQLLIGNKSDLSELREV--SLAEAQSLAEHYD-  165 (201)
T ss_dssp             HHHHH---TTCSEEEEEEE-TTBHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT-
T ss_pred             HHHHH---hhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCcccccccc--CHHHHHHHHHHcC-
Confidence            22332   36788777333 334433322111011111111  112458899999999764322  2344444444331 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   ...++.+||++|.|++++..++..
T Consensus       166 -------------~~~~~~~SA~~g~gi~~l~~~l~~  189 (201)
T 2hup_A          166 -------------ILCAIETSAKDSSNVEEAFLRVAT  189 (201)
T ss_dssp             -------------CSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             -------------CCEEEEEeCCCCCCHHHHHHHHHH
Confidence                         225688999999999999988764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.18  E-value=1.5e-11  Score=96.77  Aligned_cols=157  Identities=15%  Similarity=0.149  Sum_probs=79.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      .-++++|.+|+|||||+|+++......     ...+.  .+.+.  ..+...+... -..++|+ +|.      ..+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~-~~~~~Dt-~G~------~~~~~~   79 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYDSFDN-----TYQAT--IGIDFLSKTMYLEDRTV-RLQLWDT-AGQ------ERFRSL   79 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCCCS-----SCCCC--CSEEEEEEEEEETTEEE-EEEEEEE-CCS------GGGGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCC-----CCCCc--eeeEEEEEEEEECCeEE-EEEEEEC-CCc------HHHHHH
Confidence            468899999999999999998532110     00111  11111  1111111111 1246777 331      112222


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ....+   ...|.+++-.+ +.++..+.........+....  ..-++.++|+||+|+.+..+.  ..+......+..+ 
T Consensus        80 ~~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~-  150 (179)
T 2y8e_A           80 IPSYI---RDSTVAVVVYD-ITNTNSFHQTSKWIDDVRTER--GSDVIIMLVGNKTDLSDKRQV--STEEGERKAKELN-  150 (179)
T ss_dssp             SHHHH---HTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHH--TTSSEEEEEEECGGGGGGCCS--CHHHHHHHHHHHT-
T ss_pred             HHHHh---cCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCcccccCcC--CHHHHHHHHHHcC-
Confidence            22332   25677777332 333333221110001111110  112458999999999865432  2334444444332 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                       .             .++.+||++|.|++++.+++.+
T Consensus       151 -~-------------~~~~~Sa~~~~~i~~l~~~l~~  173 (179)
T 2y8e_A          151 -V-------------MFIETSAKAGYNVKQLFRRVAA  173 (179)
T ss_dssp             -C-------------EEEEEBTTTTBSHHHHHHHHHH
T ss_pred             -C-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence             1             4678999999999999988765

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.18  E-value=1e-11  Score=96.78  Aligned_cols=159  Identities=14%  Similarity=0.086  Sum_probs=78.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-++++|.+|+|||||+|+++.......   .....+.  ......+....... -..++|+ +|.      ..+.....
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~-~~~~~D~-~G~------~~~~~~~~   73 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKGQFHEF---QESTIGA--AFLTQTVCLDDTTV-KFEIWDT-AGQ------ERYHSLAP   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTT---CCCCSSE--EEEEEEEEETTEEE-EEEEEEE-CCS------GGGGGGHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCCCCCC---CCCccce--EEEEEEEEECCEEE-EEEEEeC-CCc------HHhhhhhH
Confidence            3578999999999999999985321000   0011111  01000111111111 1246777 432      11112222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...   ...|.+++-.+ +.++..+.........+....  ...++.++|.||+|+.+....  ..++..+..+..+  .
T Consensus        74 ~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~--~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~  143 (170)
T 1r2q_A           74 MYY---RGAQAAIVVYD-ITNEESFARAKNWVKELQRQA--SPNIVIALSGNKADLANKRAV--DFQEAQSYADDNS--L  143 (170)
T ss_dssp             HHH---TTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--C
T ss_pred             Hhc---cCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCcccccc--CHHHHHHHHHHcC--C
Confidence            222   35777777333 334433322111001111110  112457888899999764322  2334444333321  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   .++.+||++|.|++++.+++..
T Consensus       144 -------------~~~~~Sa~~g~gi~~l~~~i~~  165 (170)
T 1r2q_A          144 -------------LFMETSAKTSMNVNEIFMAIAK  165 (170)
T ss_dssp             -------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             -------------eEEEEeCCCCCCHHHHHHHHHH
Confidence                         4678999999999999988765

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.18  E-value=1.8e-11  Score=98.05  Aligned_cols=159  Identities=16%  Similarity=0.101  Sum_probs=78.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-|+|+|.+|+|||||+|+|+.......   .....|.  ......+....... -..++|+ +|.  ....    ....
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~---~~~t~~~--~~~~~~~~~~~~~~-~~~i~Dt-~G~--~~~~----~~~~   92 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRNEFSHD---SRTTIGV--EFSTRTVMLGTAAV-KAQIWDT-AGL--ERYR----AITS   92 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCSS---CCCCSSE--EEEEEEEEETTEEE-EEEEEEE-SCC--CTTC----TTHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCC---CCCccce--eEEEEEEEECCEEE-EEEEEeC-CCc--hhhh----hhhH
Confidence            4688999999999999999985421100   0000111  01000111111111 1246777 442  1111    1222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..+   ...|.+++-.+ +.++..+.........+....  ..-++.++|+||+|+.+....  ..+..+...+..  .+
T Consensus        93 ~~~---~~~d~vi~v~D-~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~--~~  162 (193)
T 2oil_A           93 AYY---RGAVGALLVFD-LTKHQTYAVVERWLKELYDHA--EATIVVMLVGNKSDLSQAREV--PTEEARMFAENN--GL  162 (193)
T ss_dssp             HHH---TTCCEEEEEEE-TTCHHHHHTHHHHHHHHHTTS--CTTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHT--TC
T ss_pred             HHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECCCccccccc--CHHHHHHHHHHc--CC
Confidence            222   35677777332 333433221110001111111  112458999999999765322  233444443332  11


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   .++.+||++|.|++++..++..
T Consensus       163 -------------~~~~~Sa~~~~gi~~l~~~l~~  184 (193)
T 2oil_A          163 -------------LFLETSALDSTNVELAFETVLK  184 (193)
T ss_dssp             -------------EEEEECTTTCTTHHHHHHHHHH
T ss_pred             -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence                         4678999999999999887753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.18  E-value=8.8e-11  Score=91.19  Aligned_cols=158  Identities=14%  Similarity=0.071  Sum_probs=77.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      -++++|.+|||||||+|+++.....      .....+ ..... ..+....... -..++|+ +|.  ....    ....
T Consensus         5 ki~v~G~~~~GKssli~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~~~~-~~~l~D~-~G~--~~~~----~~~~   69 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQGIFV------EKYDPT-IEDSYRKQVEVDCQQC-MLEILDT-AGT--EQFT----AMRD   69 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCCCC------CSCCCC-SEEEEEEEEESSSCEE-EEEEEEE-CSS--CSST----THHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCC------CCCCCC-ccceEEEEEEECCEEE-EEEEEEC-CCh--HHHH----HHHH
Confidence            4789999999999999999853210      000111 11110 0011111111 1246777 442  1111    1222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ....   ..|.+++-.+ +.++..+.........+..... ...++.++|+||+|+.+....  ..+...+..+.. +. 
T Consensus        70 ~~~~---~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~-~~-  140 (167)
T 1c1y_A           70 LYMK---NGQGFALVYS-ITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVV--GKEQGQNLARQW-CN-  140 (167)
T ss_dssp             HHHH---HCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHC-CSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHT-TS-
T ss_pred             HHhc---cCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhhC-cCCCcEEEEEECccccccccC--CHHHHHHHHHHc-cC-
Confidence            2322   3566655222 3344332211110111111101 112458999999999765422  234444443332 12 


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  .+++.+||++|.|++++..++.+
T Consensus       141 ------------~~~~~~Sa~~~~gi~~l~~~l~~  163 (167)
T 1c1y_A          141 ------------CAFLESSAKSKINVNEIFYDLVR  163 (167)
T ss_dssp             ------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ------------CcEEEecCCCCCCHHHHHHHHHH
Confidence                        24788999999999999988754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.18  E-value=4.9e-11  Score=95.29  Aligned_cols=53  Identities=17%  Similarity=0.120  Sum_probs=37.9

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +|.++|+||+|+.+..    ..+++++.++..              +...++.+||++|.|++++..++..
T Consensus       136 ~piilv~NK~Dl~~~~----~~~~~~~~~~~~--------------~~~~~~~~Sa~~~~gv~~l~~~l~~  188 (198)
T 3t1o_A          136 VPIVIQVNKRDLPDAL----PVEMVRAVVDPE--------------GKFPVLEAVATEGKGVFETLKEVSR  188 (198)
T ss_dssp             SCEEEEEECTTSTTCC----CHHHHHHHHCTT--------------CCSCEEECBGGGTBTHHHHHHHHHH
T ss_pred             CCEEEEEEchhccccc----CHHHHHHHHHhc--------------CCceEEEEecCCCcCHHHHHHHHHH
Confidence            4589999999997753    234555544332              2225788999999999999988764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.17  E-value=2.2e-11  Score=97.76  Aligned_cols=162  Identities=14%  Similarity=0.160  Sum_probs=82.2

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ...+-|+|+|.+|||||||+++++.    .+...+...+  |.+.....+..  .... ..++|+ +|.      ..+..
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~----~~~~~~~~~~--t~~~~~~~~~~--~~~~-~~i~Dt-~G~------~~~~~   78 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKP----AQSSSKHITA--TVGYNVETFEK--GRVA-FTVFDM-GGA------KKFRG   78 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSC----CC----CCCC--CSSEEEEEEEE--TTEE-EEEEEE-CCS------GGGGG
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc----CCCccccccc--ccceeEEEEEe--CCEE-EEEEEC-CCC------HhHHH
Confidence            3455789999999999999999994    3333221111  12222222221  1111 256777 442      11111


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeC------eEEeeEEEEecCCCCCCCCCcchHHHHH
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLD------SIITDVVILNKVDLVSPERSGDSLDELE  182 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~------~~i~~iivlNK~Dl~~~~~~~~~~~~~~  182 (263)
                      .....   ....|.+++-.+ +.++..+... .++...+... ...      ..++.++|+||+|+.+...    .+++.
T Consensus        79 ~~~~~---~~~~d~ii~v~D-~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~piilv~NK~Dl~~~~~----~~~~~  149 (199)
T 4bas_A           79 LWETY---YDNIDAVIFVVD-SSDHLRLCVVKSEIQAMLKHE-DIRRELPGGGRVPFLFFANKMDAAGAKT----AAELV  149 (199)
T ss_dssp             GGGGG---CTTCSEEEEEEE-TTCGGGHHHHHHHHHHHHTSH-HHHSBCTTSCBCCEEEEEECTTSTTCCC----HHHHH
T ss_pred             HHHHH---HhcCCEEEEEEE-CCcHHHHHHHHHHHHHHHhCh-hhhhcccccCCCCEEEEEECcCCCCCCC----HHHHH
Confidence            11111   246788777333 3344333221 1111111110 000      1255899999999987642    34444


Q ss_pred             HHHHhhc--CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          183 KEIHEIN--SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       183 ~~l~~~~--p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +.+....  ..           ....++.+||++|.|++++.+++..
T Consensus       150 ~~~~~~~~~~~-----------~~~~~~~~Sa~~g~gv~~l~~~l~~  185 (199)
T 4bas_A          150 EILDLTTLMGD-----------HPFVIFASNGLKGTGVHEGFSWLQE  185 (199)
T ss_dssp             HHHTHHHHHTT-----------SCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             HHhcchhhccC-----------CeeEEEEeeCCCccCHHHHHHHHHH
Confidence            4432110  00           0124788999999999999988764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.17  E-value=5.8e-12  Score=98.08  Aligned_cols=155  Identities=15%  Similarity=0.188  Sum_probs=77.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      -++++|.+|||||||+|+++....       ......|.+.+..  .+...+... -..++|+ +|.      ..+....
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~~~~~~   71 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGIF-------TKDYKKTIGVDFLERQIQVNDEDV-RLMLWDT-AGQ------EEFDAIT   71 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCCC-------CCCSSCCCSSSEEEEEEEETTEEE-EEEEECC-TTG------GGTTCCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCC-------CCCCCCceEEEEEEEEEEECCEEE-EEEEEcC-CCc------HhHHHHH
Confidence            578999999999999999985321       1111111221111  111111011 1245666 331      1111111


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ....   ...|.+++-.+ +.++..+.........+....   ...+.++|+||+|+.+..+.  ..+..++..+..+  
T Consensus        72 ~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--  140 (168)
T 1z2a_A           72 KAYY---RGAQACVLVFS-TTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCI--KNEEAEGLAKRLK--  140 (168)
T ss_dssp             HHHH---TTCCEEEEEEE-TTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--
T ss_pred             HHHh---cCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCccccc--CHHHHHHHHHHcC--
Confidence            2222   35677776332 233332221111011111111   11458999999999864322  2344444444332  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .             +++.+||++|.|++++..++.+
T Consensus       141 ~-------------~~~~~Sa~~~~~i~~l~~~l~~  163 (168)
T 1z2a_A          141 L-------------RFYRTSVKEDLNVSEVFKYLAE  163 (168)
T ss_dssp             C-------------EEEECBTTTTBSSHHHHHHHHH
T ss_pred             C-------------eEEEEecCCCCCHHHHHHHHHH
Confidence            1             4678999999999999988754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.17  E-value=3.1e-11  Score=96.73  Aligned_cols=53  Identities=19%  Similarity=0.209  Sum_probs=36.8

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .+.++|+||+| ....+  ...+++.+.++..+  .             .++.+||++|.|++++..++..
T Consensus       148 ~piilv~NK~D-~~~~~--~~~~~~~~~~~~~~--~-------------~~~~~Sa~~~~~i~~l~~~l~~  200 (208)
T 3clv_A          148 YIIILVANKID-KNKFQ--VDILEVQKYAQDNN--L-------------LFIQTSAKTGTNIKNIFYMLAE  200 (208)
T ss_dssp             CEEEEEEECTT-CC-CC--SCHHHHHHHHHHTT--C-------------EEEEECTTTCTTHHHHHHHHHH
T ss_pred             CcEEEEEECCC-ccccc--CCHHHHHHHHHHcC--C-------------cEEEEecCCCCCHHHHHHHHHH
Confidence            55899999999 33221  23456666555432  1             4688999999999999988754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.17  E-value=2.8e-11  Score=95.55  Aligned_cols=158  Identities=16%  Similarity=0.150  Sum_probs=80.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      .-++++|.+|+|||||+|+++......     ...+  +.+.+.  ..+....... -..++|+ +|.      ..+...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~   77 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKDQFVE-----FQES--TIGAAFFSQTLAVNDATV-KFEIWDT-AGQ------ERYHSL   77 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCTT-----TSCC--CSCCSEEEEEEEETTEEE-EEEEEEC-CCS------GGGGGG
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCC-----cCCC--CceeEEEEEEEEECCEEE-EEEEEeC-CCC------hhhhhh
Confidence            358899999999999999998542110     0000  011111  0111111011 1246777 331      111112


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ....+   ...|.+++-.+ +.++..+.........+....  ...++.++|+||+|+.+..+.  ..+.+++..+..+ 
T Consensus        78 ~~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~--~~~~p~i~v~nK~Dl~~~~~~--~~~~~~~~~~~~~-  148 (181)
T 2efe_B           78 APMYY---RGAAAAIIVFD-VTNQASFERAKKWVQELQAQG--NPNMVMALAGNKSDLLDARKV--TAEDAQTYAQENG-  148 (181)
T ss_dssp             THHHH---TTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT-
T ss_pred             hHHHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCcccccccC--CHHHHHHHHHHcC-
Confidence            22222   35677777333 334433222111111111110  012458999999999765432  2344444443321 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                       .             .++.+||++|.|++++..++...
T Consensus       149 -~-------------~~~~~Sa~~g~gi~~l~~~l~~~  172 (181)
T 2efe_B          149 -L-------------FFMETSAKTATNVKEIFYEIARR  172 (181)
T ss_dssp             -C-------------EEEECCSSSCTTHHHHHHHHHHT
T ss_pred             -C-------------EEEEEECCCCCCHHHHHHHHHHH
Confidence             1             36789999999999999888653

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.16  E-value=6.1e-11  Score=100.84  Aligned_cols=58  Identities=14%  Similarity=0.248  Sum_probs=27.0

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                      ++.++|+||+|+++..    .+..+.+.+++.....          + -.++.+||.+++|++++..++.+..
T Consensus       145 ~pvi~V~nK~D~~~~~----e~~~~~~~i~~~l~~~----------~-i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          145 VNIIPLIAKADTLTPE----ECQQFKKQIMKEIQEH----------K-IKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             SCEEEEESSGGGSCHH----HHHHHHHHHHHHHHHT----------T-CCCCCC-----------CHHHHHTC
T ss_pred             CCEEEEEeccCCCCHH----HHHHHHHHHHHHHHHc----------C-CeEEcCCCCCChhHHHHHHHHhcCC
Confidence            4589999999998764    2333333333221100          0 1367889999999999988887543

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.16  E-value=2.4e-11  Score=97.22  Aligned_cols=158  Identities=11%  Similarity=0.072  Sum_probs=78.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -|+|+|.+|+|||||+|+++........   ....|.+..  ...+........ ..++|+ +|.      ..+......
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~--~~~~~~~~~~~~-~~i~Dt-~G~------~~~~~~~~~   91 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDTFTPAF---VSTVGIDFK--VKTVYRHEKRVK-LQIWDT-AGQ------ERYRTITTA   91 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTCCCE---EEEETTTEE--EEEEEETTTTEE-EEEECH-HHH------HHCHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhcCCCCccc---CCCeeeEEE--EEEEEECCEEEE-EEEEeC-CCh------HHHHHHHHH
Confidence            5789999999999999999864311111   011121111  111111111111 245666 331      122222222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      .+   ...|.+++-.+ +.++..+.........+....  ...++.++|+||+|+.+....  ..+......+..+  + 
T Consensus        92 ~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~-  160 (191)
T 3dz8_A           92 YY---RGAMGFILMYD-ITNEESFNAVQDWATQIKTYS--WDNAQVILVGNKCDMEEERVV--PTEKGQLLAEQLG--F-  160 (191)
T ss_dssp             HH---TTCCEEEEEEE-TTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--C-
T ss_pred             HH---ccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC--C-
Confidence            22   36787777332 334433321111111111110  012458999999999765322  2233333333332  1 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  .++.+||++|.|++++..++..
T Consensus       161 ------------~~~~~Sa~~~~gi~~l~~~l~~  182 (191)
T 3dz8_A          161 ------------DFFEASAKENISVRQAFERLVD  182 (191)
T ss_dssp             ------------EEEECBTTTTBSHHHHHHHHHH
T ss_pred             ------------eEEEEECCCCCCHHHHHHHHHH
Confidence                        4678999999999999887754

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.16  E-value=1.4e-11  Score=96.05  Aligned_cols=159  Identities=11%  Similarity=0.059  Sum_probs=78.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      --++++|.+|+|||||+|+++.......   ..+..|.+..  ...+....... -..++|+ +|.      ..+.....
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~--~~~~~~~~~~~-~~~~~Dt-~G~------~~~~~~~~   73 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDSFDPN---INPTIGASFM--TKTVQYQNELH-KFLIWDT-AGL------ERFRALAP   73 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCTT---CCCCCSEEEE--EEEEEETTEEE-EEEEEEE-CCS------GGGGGGTH
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCCC---CCCceeEEEE--EEEEEECCeEE-EEEEEcC-CCc------hhhhcccH
Confidence            3578999999999999999986421100   0111121111  00111111111 1246777 342      11112222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...   ...|.+++-.+ +.++............+... . ...++.++|.||+|+.+..+.  ..+......+..+   
T Consensus        74 ~~~---~~~~~~i~v~d-~~~~~s~~~~~~~~~~l~~~-~-~~~~~iilv~nK~Dl~~~~~v--~~~~~~~~~~~~~---  142 (170)
T 1z0j_A           74 MYY---RGSAAAIIVYD-ITKEETFSTLKNWVRELRQH-G-PPSIVVAIAGNKCDLTDVREV--MERDAKDYADSIH---  142 (170)
T ss_dssp             HHH---TTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHH-S-CTTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT---
T ss_pred             hhC---cCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHh-C-CCCCcEEEEEECCcccccccc--CHHHHHHHHHHcC---
Confidence            222   35677766332 33343322211111111111 0 112457889999999865432  1233333333221   


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  ..++.+||++|.|++++..++..
T Consensus       143 ------------~~~~~~Sa~~~~~i~~l~~~i~~  165 (170)
T 1z0j_A          143 ------------AIFVETSAKNAININELFIEISR  165 (170)
T ss_dssp             ------------CEEEECBTTTTBSHHHHHHHHHH
T ss_pred             ------------CEEEEEeCCCCcCHHHHHHHHHH
Confidence                        14678999999999999988764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.15  E-value=3.3e-11  Score=97.40  Aligned_cols=159  Identities=14%  Similarity=0.077  Sum_probs=75.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-|+|+|.+|+|||||+|+++..    +... ...+..+.......+...+... -..++|+ +|.      ..+.....
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~----~~~~-~~~~t~~~~~~~~~~~~~~~~~-~l~l~Dt-~G~------~~~~~~~~   92 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIEN----KFKQ-DSNHTIGVEFGSRVVNVGGKTV-KLQIWDT-AGQ------ERFRSVTR   92 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC-----------------CCEEEEEEEETTEEE-EEEEECC-TTH------HHHSCCCH
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC----CCCc-cCCCcccceeEEEEEEECCeee-EEEEEcC-CCc------HhHHHHHH
Confidence            35889999999999999999843    2111 1111100111111111111011 1245666 331      11111111


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..+   ...|.+++-.+ +.++..+.........+.....  .-++.++|+||+|+.+....  ...+..+..+..+  .
T Consensus        93 ~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~  162 (200)
T 2o52_A           93 SYY---RGAAGALLVYD-ITSRETYNSLAAWLTDARTLAS--PNIVVILCGNKKDLDPEREV--TFLEASRFAQENE--L  162 (200)
T ss_dssp             HHH---TTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHTC--TTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--C
T ss_pred             HHh---ccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECCCccccccc--CHHHHHHHHHHcC--C
Confidence            121   35777777332 3334332211100011111100  12458999999999764322  2233333333321  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   .++.+||++|.|++++..++..
T Consensus       163 -------------~~~~~SA~~g~gi~~l~~~l~~  184 (200)
T 2o52_A          163 -------------MFLETSALTGENVEEAFLKCAR  184 (200)
T ss_dssp             -------------EEEEECTTTCTTHHHHHHHHHH
T ss_pred             -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence                         4678999999999999888754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.15  E-value=8.4e-11  Score=94.91  Aligned_cols=162  Identities=16%  Similarity=0.185  Sum_probs=79.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-++++|.+|||||||++++.    +.++....+.    .+.....+...  +.. ..++|+ +|.-  ..+.    ...
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~----~~~~~~~~~t----~~~~~~~~~~~--~~~-l~i~Dt-~G~~--~~~~----~~~   87 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLK----DDRLGQHVPT----LHPTSEELTIA--GMT-FTTFDL-GGHI--QARR----VWK   87 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHS----CC------CC----CCCSCEEEEET--TEE-EEEEEE-CC------CC----GGG
T ss_pred             cEEEEECCCCCCHHHHHHHHh----cCCCCccCCC----CCceeEEEEEC--CEE-EEEEEC-CCcH--hhHH----HHH
Confidence            357899999999999999998    3333222222    22222222221  111 246777 4421  1110    001


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ..   ...+|.+++-.+ +.++..+.... ++...+... .. .-+|.++|.||+|+.+..    ..+++++.++.....
T Consensus        88 ~~---~~~~d~~i~v~D-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~  157 (198)
T 1f6b_A           88 NY---LPAINGIVFLVD-CADHERLLESKEELDSLMTDE-TI-ANVPILILGNKIDRPEAI----SEERLREMFGLYGQT  157 (198)
T ss_dssp             GG---GGGCSEEEEEEE-TTCGGGHHHHHHHHHHHHTCG-GG-TTSCEEEEEECTTSTTCC----CHHHHHHHHTCTTTC
T ss_pred             HH---HhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHhCc-cc-CCCcEEEEEECCCccccC----CHHHHHHHhCccccc
Confidence            11   135677777333 34443332211 111111110 00 114589999999997632    245555555432100


Q ss_pred             CeEEEeecC-------CCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRC-------QVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~-------~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                           ...+       ......++.+||++|+|++++.+++..
T Consensus       158 -----~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~  195 (198)
T 1f6b_A          158 -----TGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ  195 (198)
T ss_dssp             -----CCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             -----ccccccccccccCceEEEEEEECCCCCCHHHHHHHHHH
Confidence                 0000       011235788999999999999988754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.15  E-value=1.4e-10  Score=89.86  Aligned_cols=155  Identities=13%  Similarity=0.074  Sum_probs=79.1

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|+|||||+|+++.....      ...+  |.+.....+...  ... ..++|+ +|.      ..+.......
T Consensus         3 i~~~G~~~~GKssl~~~l~~~~~~------~~~~--t~~~~~~~~~~~--~~~-~~i~Dt-~G~------~~~~~~~~~~   64 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLGEIV------TTIP--TIGFNVETVEYK--NIS-FTVWDV-GGQ------DKIRPLWRHY   64 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHCSS------CCCC--CSSCCEEEEECS--SCE-EEEEEC-CCC------GGGHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcCCcC------cccC--cCceeEEEEEEC--CEE-EEEEEc-CCC------hhhHHHHHHH
Confidence            689999999999999999853210      1111  122221112111  111 256777 442      1222222222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                         ...+|.+++-.+ +.++..+.... ++...+... .. .-.+.++|+||+|+.+..    ..+.+.+.+....  +.
T Consensus        65 ---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~--~~  132 (164)
T 1r8s_A           65 ---FQNTQGLIFVVD-SNDRERVNEAREELMRMLAED-EL-RDAVLLVFANKQDLPNAM----NAAEITDKLGLHS--LR  132 (164)
T ss_dssp             ---TTTCSEEEEEEE-TTCGGGHHHHHHHHHHHHTCG-GG-TTCEEEEEEECTTSTTCC----CHHHHHHHTTGGG--CS
T ss_pred             ---hccCCEEEEEEE-CCCHHHHHHHHHHHHHHHhch-hh-cCCeEEEEEECcCCcCCC----CHHHHHHHhCccc--cc
Confidence               246788777333 34443332211 111111110 01 114589999999997753    2234444332110  00


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                             ... -+++.+||++|.|++++.+++..
T Consensus       133 -------~~~-~~~~~~Sa~~~~gi~~l~~~l~~  158 (164)
T 1r8s_A          133 -------HRN-WYIQATCATSGDGLYEGLDWLSN  158 (164)
T ss_dssp             -------SCC-EEEEECBTTTTBTHHHHHHHHHH
T ss_pred             -------Ccc-EEEEEcccCCCcCHHHHHHHHHH
Confidence                   001 14788999999999999988764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.15  E-value=2.6e-10  Score=102.22  Aligned_cols=169  Identities=17%  Similarity=0.152  Sum_probs=82.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccc--------cchhh--hhcCC-C-CcceeeeeeecCcceE
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIG--------VERAM--INEGE-G-GALVEEWVELANGCIC  100 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~--------~d~~~--~~~~~-~-~~~~~~~~~l~~g~~~  100 (263)
                      ..++++|.+|+|||||+|+|+........+......+.+..        .+...  ..... . ...-..++|+ +|-  
T Consensus         9 ~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt-PGh--   85 (403)
T 3sjy_A            9 VNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA-PGH--   85 (403)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC-CCC--
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEEC-CCc--
Confidence            46889999999999999999964322222222222111000        00000  00000 0 0011246777 441  


Q ss_pred             eecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHH
Q 024744          101 CTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDE  180 (263)
Q Consensus       101 ~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~  180 (263)
                          .++...+...+   ..+|.+++-.+.. ++....+.......+ ....   ..+.++|+||+|+.+.++.....++
T Consensus        86 ----~~~~~~~~~~~---~~~D~~ilVvda~-~~~~~~qt~~~~~~~-~~~~---~~~iivviNK~Dl~~~~~~~~~~~~  153 (403)
T 3sjy_A           86 ----EVLMATMLSGA---ALMDGAILVVAAN-EPFPQPQTREHFVAL-GIIG---VKNLIIVQNKVDVVSKEEALSQYRQ  153 (403)
T ss_dssp             ----GGGHHHHHHHH---TTCSEEEEEEETT-SCSSCHHHHHHHHHH-HHHT---CCCEEEEEECGGGSCHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHH---hhCCEEEEEEECC-CCCCcHHHHHHHHHH-HHcC---CCCEEEEEECccccchHHHHHHHHH
Confidence                33333333333   4678777733322 211111110000001 1111   1247899999999876421112222


Q ss_pred             HHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       181 ~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      +.+.++....            ...+++++||++|.|+++|.+++...
T Consensus       154 i~~~l~~~~~------------~~~~ii~vSA~~g~gi~~L~~~l~~~  189 (403)
T 3sjy_A          154 IKQFTKGTWA------------ENVPIIPVSALHKINIDSLIEGIEEY  189 (403)
T ss_dssp             HHHHHTTSTT------------TTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHHhhCC------------CCCEEEEEECCCCcChHHHHHHHHHh
Confidence            3332222111            22358899999999999999988763

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.15  E-value=2e-11  Score=96.87  Aligned_cols=157  Identities=12%  Similarity=0.091  Sum_probs=80.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-++++|.+|+|||||+|+++.    .+........|.    ....+...  +.. ..++|+ +|.      ..+.....
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~----~~~~~~~~t~~~----~~~~~~~~--~~~-~~i~Dt-~G~------~~~~~~~~   83 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSM----NEVVHTSPTIGS----NVEEIVIN--NTR-FLMWDI-GGQ------ESLRSSWN   83 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHT----TSCEEEECCSSS----SCEEEEET--TEE-EEEEEE-SSS------GGGTCGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHhc----CCCCccCCcCce----eeEEEEEC--CEE-EEEEEC-CCC------HhHHHHHH
Confidence            4688999999999999999994    333333333332    11111111  111 256777 342      11111111


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ..   ....|.+++-.+ +.++..+.... ++...+... . ..-++.++|+||+|+.+..    ..+++.+.+....-.
T Consensus        84 ~~---~~~~d~ii~v~D-~~~~~s~~~~~~~~~~~~~~~-~-~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~  153 (181)
T 2h17_A           84 TY---YTNTEFVIVVVD-STDRERISVTREELYKMLAHE-D-LRKAGLLIFANKQDVKECM----TVAEISQFLKLTSIK  153 (181)
T ss_dssp             GG---GTTCCEEEEEEE-TTCTTTHHHHHHHHHHHHTCG-G-GTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCC
T ss_pred             HH---hccCCEEEEEEE-CCCHHHHHHHHHHHHHHHhCh-h-hCCCeEEEEEECCCcccCC----CHHHHHHHhCccccc
Confidence            11   146787777333 33332222211 111111110 0 0114589999999998753    234444443211000


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                               ... -.++.+||++|.|++++.+++..
T Consensus       154 ---------~~~-~~~~~~Sa~~g~gi~~l~~~l~~  179 (181)
T 2h17_A          154 ---------DHQ-WHIQACCALTGEGLCQGLEWMMS  179 (181)
T ss_dssp             ---------SSC-EEEEECBTTTTBTHHHHHHHHHT
T ss_pred             ---------CCc-eEEEEccCCCCcCHHHHHHHHHh
Confidence                     001 15788999999999999988753

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.14  E-value=2.9e-11  Score=97.61  Aligned_cols=161  Identities=14%  Similarity=0.085  Sum_probs=53.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCC-cceeeeeeecCcceEeecchhHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGG-ALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~-~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      .-|+++|.+|+|||||+|+++..    +.........+ .+.+..  .+...+.. .....++|+ +|.      ..   
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~----~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~------~~---   85 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK----GSKFLKDYAMT-SGVEVVVAPVTIPDTTVSVELFLLDT-AGS------DL---   85 (208)
T ss_dssp             EEEEEC---------------------------------------CEEEECTTSSEEEEEEEEET-TTT------HH---
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC----CCcccCCCCCc-cceEEEEEEEEECCcccEEEEEEEEC-CCc------HH---
Confidence            46889999999999999999843    11122222222 322211  11111110 111246776 332      11   


Q ss_pred             HHHHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceee-CeEEeeEEEEecCCCCC-CCCCcchHHHHHHHHH
Q 024744          110 ALEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRL-DSIITDVVILNKVDLVS-PERSGDSLDELEKEIH  186 (263)
Q Consensus       110 ~l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~-~~~i~~iivlNK~Dl~~-~~~~~~~~~~~~~~l~  186 (263)
                       ...+... ....|.+++-.+ +.++..+.........+...... ..-++.++|+||+|+.+ ....  ..++..+..+
T Consensus        86 -~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v--~~~~~~~~~~  161 (208)
T 2yc2_C           86 -YKEQISQYWNGVYYAILVFD-VSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQV--RLDMAQDWAT  161 (208)
T ss_dssp             -HHHHHSTTCCCCCEEEEEEE-TTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CC--CHHHHHHHHH
T ss_pred             -HHHHHHHHHhhCcEEEEEEE-CCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccC--CHHHHHHHHH
Confidence             2222211 246788777333 34444332211111111111000 01256899999999987 3322  2344555554


Q ss_pred             hhcCCCeEEEeecCCCChhhhhccccCC-cchhhhhhhhhhh
Q 024744          187 EINSLAHVIRSVRCQVDLSEVLNCRAYD-ATHVTRLEGLLEE  227 (263)
Q Consensus       187 ~~~p~~~i~~~~~~~~~~~~ii~isa~~-g~~~~~l~~~l~~  227 (263)
                      ..+  .             .++.+||++ |.|++++..++..
T Consensus       162 ~~~--~-------------~~~~~Sa~~~~~gi~~l~~~i~~  188 (208)
T 2yc2_C          162 TNT--L-------------DFFDVSANPPGKDADAPFLSIAT  188 (208)
T ss_dssp             HTT--C-------------EEEECCC-------CHHHHHHHH
T ss_pred             HcC--C-------------EEEEeccCCCCcCHHHHHHHHHH
Confidence            432  1             467899999 9999999888754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.14  E-value=1.8e-11  Score=98.23  Aligned_cols=161  Identities=11%  Similarity=0.055  Sum_probs=81.8

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh-hhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA-MINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~-~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      ..-++++|.+|+|||||+|+++....      ......+ ...... .+...+.. ....++|+ +|.      ..+...
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~~~------~~~~~~t-~~~~~~~~~~~~~~~-~~~~i~Dt-~G~------~~~~~~   87 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKGEI------PTAYVPT-VFENFSHVMKYKNEE-FILHLWDT-AGQ------EEYDRL   87 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCC------CSSCCCC-SEEEEEEEEEETTEE-EEEEEEEE-CCS------GGGTTT
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcCCC------CCccCCe-eeeeeEEEEEECCEE-EEEEEEEC-CCc------HHHHHH
Confidence            34688999999999999999985421      0111111 111110 01111111 11246777 331      111111


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      ...   .....|.+++-.+ +.++..+... ......+....   .-++.++|+||+|+.+........+...+..+..+
T Consensus        88 ~~~---~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  160 (194)
T 3reg_A           88 RPL---SYADSDVVLLCFA-VNNRTSFDNISTKWEPEIKHYI---DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLG  160 (194)
T ss_dssp             GGG---GCTTCSEEEEEEE-TTCHHHHHHHHHTHHHHHHHHC---TTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHT
T ss_pred             hHh---hccCCcEEEEEEE-CCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcC
Confidence            111   1136788777332 4444443332 11111121111   11458999999999864221223444555444432


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                                    ...++.+||++|.|++++..++...
T Consensus       161 --------------~~~~~~~Sa~~~~gi~~l~~~l~~~  185 (194)
T 3reg_A          161 --------------CVAYIEASSVAKIGLNEVFEKSVDC  185 (194)
T ss_dssp             --------------CSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             --------------CCEEEEeecCCCCCHHHHHHHHHHH
Confidence                          1236789999999999999887653

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.14  E-value=5.1e-11  Score=92.72  Aligned_cols=160  Identities=15%  Similarity=0.102  Sum_probs=77.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++++|.+|||||||+|+++.......   ..+..|.  ......+...+... -..++|+ +|.      ..+......
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~-~~~~~D~-~G~------~~~~~~~~~   71 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSNDFAEN---KEPTIGA--AFLTQRVTINEHTV-KFEIWDT-AGQ------ERFASLAPX   71 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCTT---CCCCSSE--EEEEEEEEETTEEE-EEEEEEE-CCS------GGGGGGHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCC---CCCccce--eEEEEEEEECCEEE-EEEEEEC-CCC------hhhhhhhhh
Confidence            478999999999999999985421100   0011111  11101111111111 1246777 331      112222222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCC-cchHHHHHHHHHhhcCCC
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERS-GDSLDELEKEIHEINSLA  192 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~-~~~~~~~~~~l~~~~p~~  192 (263)
                      .+   ...|.+++-.+ +.++..+.........+....  ..-++.++|+||+|+.+.... ....+...+..+..+  .
T Consensus        72 ~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~--~  143 (170)
T 1ek0_A           72 YY---RNAQAALVVYD-VTKPQSFIKARHWVKELHEQA--SKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG--L  143 (170)
T ss_dssp             HH---TTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT--C
T ss_pred             hh---ccCcEEEEEEe-cCChHHHHHHHHHHHHHHHhc--CCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC--C
Confidence            22   35677777332 334433322111011111111  112458899999999765211 011222223222221  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   .++.+||++|.|++++..++..
T Consensus       144 -------------~~~~~Sa~~~~gi~~l~~~l~~  165 (170)
T 1ek0_A          144 -------------LFFETSAKTGENVNDVFLGIGE  165 (170)
T ss_dssp             -------------EEEECCTTTCTTHHHHHHHHHT
T ss_pred             -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence                         4688999999999999988754

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.14  E-value=2e-10  Score=91.26  Aligned_cols=163  Identities=13%  Similarity=0.159  Sum_probs=80.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec-----chhHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV-----KHSLV  108 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~-----~~~~~  108 (263)
                      -++++|.+|||||||+|+++..    +. ...+.+|.+....  .....     -..++|+ +|......     .+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~----~~-~~~~~~~~t~~~~--~~~~~-----~~~l~Dt-~G~~~~~~~~~~~~~~~~   69 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK----KV-RRGKRPGVTRKII--EIEWK-----NHKIIDM-PGFGFMMGLPKEVQERIK   69 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC----CC-SSSSSTTCTTSCE--EEEET-----TEEEEEC-CCBSCCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCc----CC-ccCCCCCccceeE--EEecC-----CEEEEEC-CCccccccCCHHHHHHHH
Confidence            4789999999999999999953    21 1122333322211  11111     1246777 44211100     12233


Q ss_pred             HHHHHHHHh-ccCCcEEEEcccCCCCchhHHHH--hhccc-------ccccceeeCeEEeeEEEEecCCCCCCCCCcchH
Q 024744          109 QALEQLVQR-KERLDHILLETTGLANPAPLASV--LWLDD-------QLESAVRLDSIITDVVILNKVDLVSPERSGDSL  178 (263)
Q Consensus       109 ~~l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~--~~~~~-------~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~  178 (263)
                      ......... ...+++++.    +.++......  .+...       .+...... .-+|.++|+||+|+.+..     .
T Consensus        70 ~~~~~~~~~~~~~~~~v~~----v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~-----~  139 (190)
T 2cxx_A           70 DEIVHFIEDNAKNIDVAVL----VVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-LDIPTIVAVNKLDKIKNV-----Q  139 (190)
T ss_dssp             HHHHHHHHHHGGGCCEEEE----EEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-TTCCEEEEEECGGGCSCH-----H
T ss_pred             HHHHHHHHhhhccCCEEEE----EEcchhhhhHHHhhhccCccHHHHHHHHHHHh-cCCceEEEeehHhccCcH-----H
Confidence            333334332 345667666    4444433211  01000       00010000 114589999999998752     1


Q ss_pred             HHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          179 DELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       179 ~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +...+..+.++-..       .. ....++.+||++|.|++++..++..
T Consensus       140 ~~~~~~~~~~~~~~-------~~-~~~~~~~~Sa~~~~~v~~l~~~l~~  180 (190)
T 2cxx_A          140 EVINFLAEKFEVPL-------SE-IDKVFIPISAKFGDNIERLKNRIFE  180 (190)
T ss_dssp             HHHHHHHHHHTCCG-------GG-HHHHEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhh-------hc-cCCcEEEEecCCCCCHHHHHHHHHH
Confidence            22223223322100       00 0135688999999999999988764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.14  E-value=5.7e-11  Score=95.06  Aligned_cols=159  Identities=17%  Similarity=0.048  Sum_probs=77.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      --++|+|.+|+|||||+|+++.......   .....|.  ......+...+... -..++|+ +|.      ..+.....
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~---~~~t~~~--~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~~   88 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDKRFQPV---HDLTIGV--EFGARMVNIDGKQI-KLQIWDT-AGQ------ESFRSITR   88 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHSCCCC--------CCS--SEEEEEEEETTEEE-EEEEECC-TTG------GGTSCCCH
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCC---CCCcccc--eeEEEEEEECCEEE-EEEEEEC-CCc------hhhhhhHH
Confidence            3578999999999999999985421100   0011111  11111111111111 1246676 331      11111112


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..+   ...|.+++-.+ +.++..+.........+....  ...++.++|+||+|+.+..+.  ..+..++..+..+  .
T Consensus        89 ~~~---~~~d~ii~v~d-~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~  158 (191)
T 2a5j_A           89 SYY---RGAAGALLVYD-ITRRETFNHLTSWLEDARQHS--SSNMVIMLIGNKSDLESRRDV--KREEGEAFAREHG--L  158 (191)
T ss_dssp             HHH---TTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--C
T ss_pred             HHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccCCcccc--CHHHHHHHHHHcC--C
Confidence            222   35777777332 333333221110001111110  112458999999999764322  2234444433332  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   .++.+||++|.|++++..++..
T Consensus       159 -------------~~~~~Sa~~~~gi~~l~~~l~~  180 (191)
T 2a5j_A          159 -------------IFMETSAKTACNVEEAFINTAK  180 (191)
T ss_dssp             -------------EEEEECTTTCTTHHHHHHHHHH
T ss_pred             -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence                         4678999999999999887753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.14  E-value=1.3e-10  Score=91.84  Aligned_cols=160  Identities=16%  Similarity=0.096  Sum_probs=78.9

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      +..-|+++|.+|+|||||+|+++....      ......+ .... ...+...+... ...++|+ +|.-      .+..
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~------~~~~~~t-~~~~~~~~~~~~~~~~-~~~l~Dt-~G~~------~~~~   69 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQF------VDSYDPT-IENTFTKLITVNGQEY-HLQLVDT-AGQD------EYSI   69 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSC------CSCCCTT-CCEEEEEEEEETTEEE-EEEEEEC-CCCC------TTCC
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCC------CCCCCCC-ccccEEEEEEECCEEE-EEEEEeC-CCch------hhhH
Confidence            445789999999999999999985321      0111111 1111 11111111111 1246676 3320      0000


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      .....   ....|.+++-. .+.++..+.........+..... ..-++.++|+||+|+.+....  ..+...+..+..+
T Consensus        70 ~~~~~---~~~~~~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~  142 (181)
T 3t5g_A           70 FPQTY---SIDINGYILVY-SVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVI--SYEEGKALAESWN  142 (181)
T ss_dssp             CCGGG---TTTCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCS--CHHHHHHHHHHTT
T ss_pred             HHHHH---HhcCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhccee--cHHHHHHHHHHhC
Confidence            00011   13567776622 23344433222111111211111 112558999999999765432  2344444444331


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                        +             +++.+||++|.|++++..++..
T Consensus       143 --~-------------~~~~~Sa~~~~~v~~l~~~l~~  165 (181)
T 3t5g_A          143 --A-------------AFLESSAKENQTAVDVFRRIIL  165 (181)
T ss_dssp             --C-------------EEEECCTTSHHHHHHHHHHHHH
T ss_pred             --C-------------cEEEEecCCCCCHHHHHHHHHH
Confidence              1             4688999999999999888764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.13  E-value=1.5e-10  Score=92.00  Aligned_cols=156  Identities=17%  Similarity=0.161  Sum_probs=80.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-++++|.+|||||||+|+++..    +.   . ....|.+.....+...  ... ..++|+ +|.      ..    ..
T Consensus        19 ~~i~v~G~~~~GKssl~~~l~~~----~~---~-~~~~t~~~~~~~~~~~--~~~-~~~~Dt-~G~------~~----~~   76 (186)
T 1ksh_A           19 LRLLMLGLDNAGKTTILKKFNGE----DV---D-TISPTLGFNIKTLEHR--GFK-LNIWDV-GGQ------KS----LR   76 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTTC----CC---S-SCCCCSSEEEEEEEET--TEE-EEEEEE-CCS------HH----HH
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC----CC---C-cccccCccceEEEEEC--CEE-EEEEEC-CCC------Hh----HH
Confidence            46889999999999999999943    21   1 1111122221111111  111 246777 332      11    11


Q ss_pred             HHHHh-ccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          113 QLVQR-KERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       113 ~~~~~-~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ..... ....|.+++-.+ +.++..+.... ++...+... .. .-++.++|+||+|+.+..    ..+++.+.+.....
T Consensus        77 ~~~~~~~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~  149 (186)
T 1ksh_A           77 SYWRNYFESTDGLIWVVD-SADRQRMQDCQRELQSLLVEE-RL-AGATLLIFANKQDLPGAL----SCNAIQEALELDSI  149 (186)
T ss_dssp             TTGGGGCTTCSEEEEEEE-TTCGGGHHHHHHHHHHHHTCG-GG-TTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGC
T ss_pred             HHHHHHhcCCCEEEEEEE-CcCHHHHHHHHHHHHHHHhCh-hc-CCCcEEEEEeCccCCCCC----CHHHHHHHhChhhc
Confidence            11111 246788777333 34443332211 111111110 00 114589999999998764    23444444321100


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .         . ..-.++.+||++|.|++++.+++..
T Consensus       150 ~---------~-~~~~~~~~Sa~~~~gi~~l~~~l~~  176 (186)
T 1ksh_A          150 R---------S-HHWRIQGCSAVTGEDLLPGIDWLLD  176 (186)
T ss_dssp             C---------S-SCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             c---------C-CceEEEEeeCCCCCCHHHHHHHHHH
Confidence            0         0 0115788999999999999988764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.13  E-value=4.3e-11  Score=93.23  Aligned_cols=155  Identities=14%  Similarity=0.114  Sum_probs=75.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      -++++|.+|+|||||+|+++......     ...++  .+.+.  ..+...+... -..++|+ +|.      ..+....
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~~~~-----~~~~~--~~~~~~~~~~~~~~~~~-~~~l~D~-~G~------~~~~~~~   69 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDKFNP-----SFITT--IGIDFKIKTVDINGKKV-KLQIWDT-AGQ------ERFRTIT   69 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCCCCC--------------CCEEEEEEESSSCEE-EEEEECC-TTG------GGTSCCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCCCC-----CCCCc--cceeEEEEEEEECCEEE-EEEEEeC-CCC------hhhhhhH
Confidence            47899999999999999998542110     00111  11111  1111111111 1245676 332      1111111


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ...+   ...|.+++-.+ +.++..+.........+....  ...++.++|+||+|+.+...   ..+...+..+..+  
T Consensus        70 ~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--  138 (170)
T 1g16_A           70 TAYY---RGAMGIILVYD-ITDERTFTNIKQWFKTVNEHA--NDEAQLLLVGNKSDMETRVV---TADQGEALAKELG--  138 (170)
T ss_dssp             HHHH---TTEEEEEEEEE-TTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCTTCCS---CHHHHHHHHHHHT--
T ss_pred             HHHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccCCcCcc---CHHHHHHHHHHcC--
Confidence            2222   35677777333 333333211110001111110  01245899999999954321   2233333333332  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .             +++.+||++|.|++++..++..
T Consensus       139 ~-------------~~~~~Sa~~~~gv~~l~~~l~~  161 (170)
T 1g16_A          139 I-------------PFIESSAKNDDNVNEIFFTLAK  161 (170)
T ss_dssp             C-------------CEEECBTTTTBSHHHHHHHHHH
T ss_pred             C-------------eEEEEECCCCCCHHHHHHHHHH
Confidence            1             4688999999999999988764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.13  E-value=1.1e-10  Score=93.64  Aligned_cols=54  Identities=20%  Similarity=0.102  Sum_probs=36.8

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      ++.++|+||+|+.+...   ..+......+..+  .             .++.+||++|.|++++.+++...
T Consensus       115 ~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~-------------~~~~~Sa~~~~gi~~l~~~l~~~  168 (199)
T 2gf0_A          115 IPVMLVGNKCDETQREV---DTREAQAVAQEWK--C-------------AFMETSAKMNYNVKELFQELLTL  168 (199)
T ss_dssp             SCEEEEEECTTCSSCSS---CHHHHHHHHHHHT--C-------------EEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCEEEEEECccCCcccc---CHHHHHHHHHHhC--C-------------eEEEEecCCCCCHHHHHHHHHHH
Confidence            45899999999986432   2233333333322  1             46789999999999999888653

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.13  E-value=3.3e-11  Score=96.29  Aligned_cols=160  Identities=16%  Similarity=0.093  Sum_probs=78.7

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ..-|+++|.+|+|||||+|+|+.......   .....+.  ......+....... -..++|+ +|.      ..+....
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~---~~~t~~~--~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~   81 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPE---LAATIGV--DFKVKTISVDGNKA-KLAIWDT-AGQ------ERFRTLT   81 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTT---CCCCCSE--EEEEEEEEETTEEE-EEEEEEE-CSS------GGGCCSH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCcc---CCCccce--EEEEEEEEECCeEE-EEEEEeC-CCc------hhhhhhh
Confidence            34688999999999999999985421100   0000111  11111111111111 1246677 332      1111112


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ...+   ...|.+++-.+ +.++..+.........+..... ...++.++|+||+|+.+...   ..+...+..+..+  
T Consensus        82 ~~~~---~~~d~ii~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~--  151 (195)
T 1x3s_A           82 PSYY---RGAQGVILVYD-VTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENREV---DRNEGLKFARKHS--  151 (195)
T ss_dssp             HHHH---TTCCEEEEEEE-TTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCCS---CHHHHHHHHHHTT--
T ss_pred             HHHh---ccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCccccc---CHHHHHHHHHHcC--
Confidence            2222   35777777333 3334332211110111221111 11255899999999965421   2333444443321  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .             .++.+||++|.|++++.+++.+
T Consensus       152 ~-------------~~~~~Sa~~~~gi~~l~~~l~~  174 (195)
T 1x3s_A          152 M-------------LFIEASAKTCDGVQCAFEELVE  174 (195)
T ss_dssp             C-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             C-------------EEEEecCCCCCCHHHHHHHHHH
Confidence            1             3678999999999999888764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.13  E-value=3.7e-11  Score=94.45  Aligned_cols=162  Identities=15%  Similarity=0.115  Sum_probs=77.8

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ..-++++|.+|||||||+|+++.......   .....|  .......+...+.. ....++|+ +|.      ..+....
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~-~~~~i~Dt-~G~------~~~~~~~   73 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQ---LFHTIG--VEFLNKDLEVDGHF-VTMQIWDT-AGQ------ERFRSLR   73 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCC-------CCS--EEEEEEEEEETTEE-EEEEEEEC-CCC------GGGHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCC---CCCcee--eeEEEEEEEECCEE-EEEEEEeC-CCc------hhhhhhH
Confidence            34688999999999999999985421100   011111  11101111111100 11246777 331      2222222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee--eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR--LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~--~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      ...   ....|.+++-.+ +.++..+.........+.....  ....++.++|+||+|+.+...   ..+...+..+.. 
T Consensus        74 ~~~---~~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~---~~~~~~~~~~~~-  145 (177)
T 1wms_A           74 TPF---YRGSDCCLLTFS-VDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQV---STEEAQAWCRDN-  145 (177)
T ss_dssp             GGG---GTTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSS---CHHHHHHHHHHT-
T ss_pred             HHH---HhcCCEEEEEEE-CcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccccc---CHHHHHHHHHhc-
Confidence            111   135677666322 3333322111000011111000  001145899999999974331   234444444322 


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ..             .+++.+||++|.|++++..++..
T Consensus       146 ~~-------------~~~~~~Sa~~~~gi~~l~~~l~~  170 (177)
T 1wms_A          146 GD-------------YPYFETSAKDATNVAAAFEEAVR  170 (177)
T ss_dssp             TC-------------CCEEECCTTTCTTHHHHHHHHHH
T ss_pred             CC-------------ceEEEEeCCCCCCHHHHHHHHHH
Confidence            11             24788999999999999888764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.12  E-value=1.6e-10  Score=92.81  Aligned_cols=159  Identities=14%  Similarity=0.091  Sum_probs=79.8

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      +..-++++|.+|+|||||+++++..    +..  ...+  |++.....+...  ... ..++|+ +|.  .    .+...
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~~----~~~--~~~~--t~~~~~~~~~~~--~~~-~~i~Dt-~G~--~----~~~~~   89 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKLG----EIV--TTIP--TIGFNVETVEYK--NIC-FTVWDV-GGQ--D----KIRPL   89 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCSS----CCE--EEEE--ETTEEEEEEEET--TEE-EEEEEC-C-----------CTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHHhC----Ccc--ccCC--cCceeEEEEEEC--CEE-EEEEEC-CCC--H----hHHHH
Confidence            3346889999999999999999842    221  1111  122221112211  111 246777 332  1    11112


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      ....+   ..+|.+++-.+ +.++..+.... ++...+... .. .-+|.++|+||+|+.+..    ..+++.+.+....
T Consensus        90 ~~~~~---~~~d~iilv~D-~~~~~s~~~~~~~l~~~~~~~-~~-~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~  159 (192)
T 2b6h_A           90 WRHYF---QNTQGLIFVVD-SNDRERVQESADELQKMLQED-EL-RDAVLLVFANKQDMPNAM----PVSELTDKLGLQH  159 (192)
T ss_dssp             HHHHH---HTCCEEEEEEE-TTCGGGHHHHHHHHHHHHTCG-GG-TTCEEEEEEECTTSTTCC----CHHHHHHHTTGGG
T ss_pred             HHHHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHhccc-cc-CCCeEEEEEECCCCCCCC----CHHHHHHHhCccc
Confidence            22222   36777777333 34443332211 111111110 00 115589999999997653    2344444332111


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ...          ..-.++.+||++|.|++++.+++..
T Consensus       160 ~~~----------~~~~~~~~SA~~g~gi~~l~~~l~~  187 (192)
T 2b6h_A          160 LRS----------RTWYVQATCATQGTGLYDGLDWLSH  187 (192)
T ss_dssp             CSS----------CCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             ccC----------CceEEEECcCCCcCCHHHHHHHHHH
Confidence            000          0114688999999999999988764

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.12  E-value=1.5e-10  Score=91.65  Aligned_cols=160  Identities=16%  Similarity=0.095  Sum_probs=78.9

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ...-|+++|.+|+|||||+|+++.....      .....+ .... .......+ ......++|+ +|.      ..+..
T Consensus        17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~-~~~~l~i~Dt-~G~------~~~~~   81 (183)
T 3kkq_A           17 PTYKLVVVGDGGVGKSALTIQFFQKIFV------DDYDPT-IEDSYLKHTEIDN-QWAILDVLDT-AGQ------EEFSA   81 (183)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCC------SCCCTT-CCEEEEEEEEETT-EEEEEEEEEC-CSC------GGGCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCC------CCCCCC-ccceeEEEEEeCC-cEEEEEEEEC-CCc------hhhHH
Confidence            3446789999999999999999853110      011111 1111 00111111 1111245676 331      11111


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      .....+.   ..|.+++-.+ +.++..+.........+..... ..-++.++|+||+|+.+....  ..+...+..+..+
T Consensus        82 ~~~~~~~---~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~v--~~~~~~~~~~~~~  154 (183)
T 3kkq_A           82 MREQYMR---TGDGFLIVYS-VTDKASFEHVDRFHQLILRVKD-RESFPMILVANKVDLMHLRKV--TRDQGKEMATKYN  154 (183)
T ss_dssp             SHHHHHH---HCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHT-SSCCCEEEEEECTTCSTTCCS--CHHHHHHHHHHHT
T ss_pred             HHHHHHh---cCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECCCchhccCc--CHHHHHHHHHHhC
Confidence            2222222   4577666222 3444332211110111111100 112458999999999874432  2344444444442


Q ss_pred             CCCeEEEeecCCCChhhhhccccC-Ccchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAY-DATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~-~g~~~~~l~~~l~~  227 (263)
                        +             +++.+||+ +|.|++++..++..
T Consensus       155 --~-------------~~~~~Sa~~~~~~v~~l~~~l~~  178 (183)
T 3kkq_A          155 --I-------------PYIETSAKDPPLNVDKTFHDLVR  178 (183)
T ss_dssp             --C-------------CEEEEBCSSSCBSHHHHHHHHHH
T ss_pred             --C-------------eEEEeccCCCCCCHHHHHHHHHH
Confidence              2             36789999 99999999887754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.12  E-value=1.1e-10  Score=94.89  Aligned_cols=24  Identities=25%  Similarity=0.455  Sum_probs=20.6

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..-++++|.+|+|||||+++++..
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346889999999999999999854

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.12  E-value=5.2e-11  Score=95.98  Aligned_cols=163  Identities=14%  Similarity=0.014  Sum_probs=77.8

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      ...-|+++|.+|||||||+|++++..    .. ....++++.......+...+... -..++|++ |.      ..+...
T Consensus        22 ~~~ki~vvG~~~vGKSsLi~~l~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~-~l~i~Dt~-g~------~~~~~~   88 (195)
T 3cbq_A           22 GIFKVMLVGESGVGKSTLAGTFGGLQ----GD-SAHEPENPEDTYERRIMVDKEEV-TLVVYDIW-EQ------GDAGGW   88 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHTCCEE----CC-GGGTTTSCTTEEEEEEEETTEEE-EEEEECCC-CC------SGGGHH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhcc----CC-ccCCCCcccceEEEEEEECCEEE-EEEEEecC-CC------ccchhh
Confidence            34578999999999999999997321    10 01112211111111111111011 11345652 21      111122


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      +.....  ...|.+++-.+ +.++..+.........+..... ..-++.++|.||+|+.+....  ..++..+..+..+ 
T Consensus        89 ~~~~~~--~~~d~~ilv~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v--~~~~~~~~a~~~~-  161 (195)
T 3cbq_A           89 LRDHCL--QTGDAFLIVFS-VTDRRSFSKVPETLLRLRAGRP-HHDLPVILVGNKSDLARSREV--SLEEGRHLAGTLS-  161 (195)
T ss_dssp             HHHHHH--HHCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHST-TSCCCEEEEEECTTCTTTCCS--CHHHHHHHHHHTT-
T ss_pred             hHHHhh--ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeechhccccCCc--CHHHHHHHHHHhC-
Confidence            322221  24566666222 3444433221100011111100 012458999999999865432  2334433333221 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                       .             .++.+||++|.|++++..++..
T Consensus       162 -~-------------~~~e~Sa~~~~~v~~lf~~l~~  184 (195)
T 3cbq_A          162 -C-------------KHIETSAALHHNTRELFEGAVR  184 (195)
T ss_dssp             -C-------------EEEEEBTTTTBSHHHHHHHHHH
T ss_pred             -C-------------EEEEEcCCCCCCHHHHHHHHHH
Confidence             1             3678999999999999887754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.11  E-value=4.9e-11  Score=95.17  Aligned_cols=160  Identities=16%  Similarity=0.158  Sum_probs=77.4

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLV  108 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~  108 (263)
                      ...-|+++|.+|||||||+|+++......     ...+  +.+.+.  ..+...+... -..++|+ +|.      ..+.
T Consensus        19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~--t~~~~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~~~   83 (189)
T 1z06_A           19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPD-----RTEA--TIGVDFRERAVDIDGERI-KIQLWDT-AGQ------ERFR   83 (189)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCS-----SCCC--CCSCCEEEEEEEETTEEE-EEEEEEC-CCS------HHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCC-----CCCC--CcceEEEEEEEEECCEEE-EEEEEEC-CCc------hhhh
Confidence            34568899999999999999998532100     0001  111111  1111111011 1246676 331      2222


Q ss_pred             -HHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          109 -QALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       109 -~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                       ......+   ..+|.+++-.+ +.++..+.........+..... ..-++.++|+||+|+.+..+.  ..+..++..+.
T Consensus        84 ~~~~~~~~---~~~d~iilv~D-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~  156 (189)
T 1z06_A           84 KSMVQHYY---RNVHAVVFVYD-MTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQV--PTDLAQKFADT  156 (189)
T ss_dssp             TTTHHHHH---TTCCEEEEEEE-TTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHH
T ss_pred             hhhhHHHh---cCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccee--CHHHHHHHHHH
Confidence             1222222   36788777332 2333322211100111111110 112458999999999765322  12333333222


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCc---chhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDA---THVTRLEGLLEE  227 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g---~~~~~l~~~l~~  227 (263)
                      .+  .             .++.+||++|   .|++++..++.+
T Consensus       157 ~~--~-------------~~~~~Sa~~~~~~~~i~~l~~~l~~  184 (189)
T 1z06_A          157 HS--M-------------PLFETSAKNPNDNDHVEAIFMTLAH  184 (189)
T ss_dssp             TT--C-------------CEEECCSSSGGGGSCHHHHHHHHC-
T ss_pred             cC--C-------------EEEEEeCCcCCcccCHHHHHHHHHH
Confidence            21  1             4678999999   888888877643

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.11  E-value=2.2e-10  Score=92.45  Aligned_cols=160  Identities=14%  Similarity=0.096  Sum_probs=78.1

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ...-|+|+|.+|||||||+|+|+.....      .....+ .... ........... ...++|+ +|.-  ...    .
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~~~~-~~~l~Dt-~G~~--~~~----~   87 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGEFS------EGYDPT-VENTYSKIVTLGKDEF-HLHLVDT-AGQD--EYS----I   87 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCC------SCCCCC-SEEEEEEEEC----CE-EEEEEEE-CCCC--TTC----C
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCC------CCCCCc-cceEEEEEEEECCEEE-EEEEEEC-CCcc--chH----H
Confidence            3446899999999999999999854211      000111 1111 11111111111 1246777 3310  000    0


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      .....   ....|.+++-.+ +.++..+.........+..... ..-++.++|+||+|+.+....  .........+..+
T Consensus        88 ~~~~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~  160 (201)
T 3oes_A           88 LPYSF---IIGVHGYVLVYS-VTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREV--QAVEGKKLAESWG  160 (201)
T ss_dssp             CCGGG---TTTCCEEEEEEE-TTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT
T ss_pred             HHHHH---HhcCCEEEEEEe-CCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCcccccc--CHHHHHHHHHHhC
Confidence            00111   135677777332 3344333222111111211111 112458999999999865432  2233333333332


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                        +             .++.+||++|.|++++..++..
T Consensus       161 --~-------------~~~~~Sa~~~~~v~~l~~~l~~  183 (201)
T 3oes_A          161 --A-------------TFMESSARENQLTQGIFTKVIQ  183 (201)
T ss_dssp             --C-------------EEEECCTTCHHHHHHHHHHHHH
T ss_pred             --C-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence              1             4678999999999999888764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.11  E-value=4.3e-11  Score=95.61  Aligned_cols=159  Identities=13%  Similarity=0.119  Sum_probs=81.1

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ..-|+++|.+|+|||||+|+++...    ...  .....|.+.....+...  +.. ..++|++ |.      ..+....
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~----~~~--~~~~~t~~~~~~~~~~~--~~~-~~l~Dt~-G~------~~~~~~~   84 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN----AQS--QNILPTIGFSIEKFKSS--SLS-FTVFDMS-GQ------GRYRNLW   84 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG----GCC--SSCCCCSSEEEEEEECS--SCE-EEEEEEC-CS------TTTGGGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC----CCC--CCcCCccceeEEEEEEC--CEE-EEEEECC-CC------HHHHHHH
Confidence            3468899999999999999998532    000  01111222222222211  111 2567773 31      1111111


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceee-CeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH--h
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRL-DSIITDVVILNKVDLVSPERSGDSLDELEKEIH--E  187 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~-~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~--~  187 (263)
                      ...   ....|.+++-.+ +.++..+.... ++...+... .. ..-++.++|+||+|+.+..    ..+++.+.++  .
T Consensus        85 ~~~---~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~  155 (190)
T 2h57_A           85 EHY---YKEGQAIIFVID-SSDRLRMVVAKEELDTLLNHP-DIKHRRIPILFFANKMDLRDAV----TSVKVSQLLCLEN  155 (190)
T ss_dssp             GGG---GGGCSEEEEEEE-TTCHHHHHHHHHHHHHHHHST-TTTTSCCCEEEEEECTTSTTCC----CHHHHHHHHTGGG
T ss_pred             HHH---HhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHhCh-hhccCCCeEEEEEeCcCcccCC----CHHHHHHHhChhh
Confidence            111   136688777333 33343332211 111111110 00 0124589999999998753    2355555543  1


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +...            .-.++.+||++|.|++++.+++..
T Consensus       156 ~~~~------------~~~~~~~Sa~~~~gi~~l~~~l~~  183 (190)
T 2h57_A          156 IKDK------------PWHICASDAIKGEGLQEGVDWLQD  183 (190)
T ss_dssp             CCSS------------CEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             ccCC------------ceEEEEccCCCCcCHHHHHHHHHH
Confidence            1110            125788999999999999988765

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.11  E-value=3e-11  Score=110.07  Aligned_cols=155  Identities=19%  Similarity=0.221  Sum_probs=81.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH--H
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA--L  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~--l  111 (263)
                      -|+|+|.+|||||||+|+|+    +...+++.+.+|+|.+.....+...  +..+ .++|+ +|.  ... .+..+.  +
T Consensus       226 kV~ivG~~nvGKSSLln~L~----~~~~a~v~~~~gtT~d~~~~~i~~~--g~~v-~liDT-~G~--~~~-~~~ve~~gi  294 (462)
T 3geh_A          226 KVAIVGRPNVGKSSLLNAWS----QSDRAIVTDLPGTTRDVVESQLVVG--GIPV-QVLDT-AGI--RET-SDQVEKIGV  294 (462)
T ss_dssp             EEEEEECTTSSHHHHHHHHH----HHHBSCCSCCTTCCHHHHHHEEEET--TEEE-EECC--------------------
T ss_pred             EEEEEcCCCCCHHHHHHHHh----CCCcccccCCCCeeEEEEEEEEEEC--CEEE-EEEEC-Ccc--ccc-hhHHHHHHH
Confidence            37899999999999999999    4444556666776555433333322  2212 46777 442  111 111111  1


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ++.......+|.+++-.+.. ++.......+ ...+..       .+.++|+||+|+.+....    .    .++.+.  
T Consensus       295 ~~~~~~~~~aD~vl~VvD~s-~~~~~~~~~i-~~~l~~-------~piivV~NK~Dl~~~~~~----~----~~~~~~--  355 (462)
T 3geh_A          295 ERSRQAANTADLVLLTIDAA-TGWTTGDQEI-YEQVKH-------RPLILVMNKIDLVEKQLI----T----SLEYPE--  355 (462)
T ss_dssp             ----CCCCSCSEEEEEEETT-TCSCHHHHHH-HHHHTT-------SCEEEEEECTTSSCGGGS----T----TCCCCT--
T ss_pred             HHHhhhhhcCCEEEEEeccC-CCCCHHHHHH-HHhccC-------CcEEEEEECCCCCcchhh----H----HHHHhc--
Confidence            22222235678888843322 2211111111 111111       348999999999876421    0    000000  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                                 ...+++.+||++|.|+++|.+++.+..
T Consensus       356 -----------~~~~~i~iSAktg~Gi~eL~~~i~~~~  382 (462)
T 3geh_A          356 -----------NITQIVHTAAAQKQGIDSLETAILEIV  382 (462)
T ss_dssp             -----------TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             -----------cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence                       123578899999999999999887643

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.11  E-value=3.4e-11  Score=94.90  Aligned_cols=162  Identities=15%  Similarity=0.134  Sum_probs=75.2

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ..-++++|.+|||||||+|+++.......     ..+  +.+.+.  ..+...+....-..++|+ +|.      .    
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~l~Dt-~G~------~----   69 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVNDKYSQQ-----YKA--TIGADFLTKEVTVDGDKVATMQVWDT-AGQ------E----   69 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTT-----C-----CCCSCEEEEECCSSSCCEEEEEECC-C-------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCcCCcc-----cCC--ccceEEEEEEEEEcCCcEEEEEEEEC-CCC------h----
Confidence            34688999999999999999986421100     000  011111  111111011111245676 331      1    


Q ss_pred             HHHHHHHh-ccCCcEEEEcccCCCCchhHHHHhhccccccccee--eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 024744          110 ALEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVR--LDSIITDVVILNKVDLVSPERSGDSLDELEKEIH  186 (263)
Q Consensus       110 ~l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~--~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~  186 (263)
                      ........ ....|.+++-.+ +.++..+.........+.....  ....++.++|+||+|+.+..+. ...+...+..+
T Consensus        70 ~~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~-v~~~~~~~~~~  147 (182)
T 1ky3_A           70 RFQSLGVAFYRGADCCVLVYD-VTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI-VSEKSAQELAK  147 (182)
T ss_dssp             -------CCSTTCCEEEEEEE-TTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC-SCHHHHHHHHH
T ss_pred             HhhhhhHHHhhcCCEEEEEEE-CCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccccc-CCHHHHHHHHH
Confidence            11111111 146777777332 3334332211100011111000  0012458999999999654211 11233333332


Q ss_pred             hhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          187 EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       187 ~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .. ..             ..++.+||++|.|++++..++..
T Consensus       148 ~~-~~-------------~~~~~~Sa~~~~gi~~l~~~l~~  174 (182)
T 1ky3_A          148 SL-GD-------------IPLFLTSAKNAINVDTAFEEIAR  174 (182)
T ss_dssp             HT-TS-------------CCEEEEBTTTTBSHHHHHHHHHH
T ss_pred             hc-CC-------------CeEEEEecCCCCCHHHHHHHHHH
Confidence            21 11             24678999999999999888754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.10  E-value=7.2e-11  Score=93.39  Aligned_cols=158  Identities=15%  Similarity=0.102  Sum_probs=79.6

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ..-++++|.+|||||||+|+++    +.+.....+..|    .....+...  +.. ..++|+ +|.  ...+.    ..
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~----~~~~~~~~~t~~----~~~~~~~~~--~~~-~~i~Dt-~G~--~~~~~----~~   79 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQ----IGEVVTTKPTIG----FNVETLSYK--NLK-LNVWDL-GGQ--TSIRP----YW   79 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTC----CSEEEEECSSTT----CCEEEEEET--TEE-EEEEEE-C------CCT----TG
T ss_pred             ccEEEEECCCCCCHHHHHHHHh----cCCcCccCCcCc----cceEEEEEC--CEE-EEEEEC-CCC--HhHHH----HH
Confidence            3568899999999999999998    444432222222    211111111  111 246777 332  11111    01


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ..   .....|.+++-.+ ..++..+.... ++...+... . ....+.++|+||+|+.+..    ..+++.+.+.... 
T Consensus        80 ~~---~~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~-~~~~piilv~nK~Dl~~~~----~~~~i~~~~~~~~-  148 (183)
T 1moz_A           80 RC---YYADTAAVIFVVD-STDKDRMSTASKELHLMLQEE-E-LQDAALLVFANKQDQPGAL----SASEVSKELNLVE-  148 (183)
T ss_dssp             GG---TTTTEEEEEEEEE-TTCTTTHHHHHHHHHHHTTSS-T-TSSCEEEEEEECTTSTTCC----CHHHHHHHTTTTT-
T ss_pred             HH---HhccCCEEEEEEE-CCCHHHHHHHHHHHHHHHcCh-h-hCCCeEEEEEECCCCCCCC----CHHHHHHHhCccc-
Confidence            11   1136677777333 23333222111 111111110 0 1125589999999998753    2344444432110 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                       +       .. ..-+++.+||++|.|++++.+++..
T Consensus       149 -~-------~~-~~~~~~~~Sa~~~~gi~~l~~~l~~  176 (183)
T 1moz_A          149 -L-------KD-RSWSIVASSAIKGEGITEGLDWLID  176 (183)
T ss_dssp             -C-------CS-SCEEEEEEBGGGTBTHHHHHHHHHH
T ss_pred             -c-------cC-CceEEEEccCCCCcCHHHHHHHHHH
Confidence             0       00 1125788999999999999988764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.10  E-value=1.1e-10  Score=91.95  Aligned_cols=160  Identities=16%  Similarity=0.034  Sum_probs=77.8

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ...-++++|.+|||||||+|+++....      .....++ ..... ..+...+.. ....++|+ +|.      ..+..
T Consensus         8 ~~~~i~v~G~~~~GKssli~~l~~~~~------~~~~~~t-~~~~~~~~~~~~~~~-~~~~~~Dt-~G~------~~~~~   72 (181)
T 2fn4_A            8 ETHKLVVVGGGGVGKSALTIQFIQSYF------VSDYDPT-IEDSYTKICSVDGIP-ARLDILDT-AGQ------EEFGA   72 (181)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSC------CSSCCTT-CCEEEEEEEEETTEE-EEEEEEEC-CCT------TTTSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCcC------ccccCCC-cCceEEEEEEECCEE-EEEEEEEC-CCc------hhhHH
Confidence            345688999999999999999985411      1111111 11111 111111101 11245777 332      11111


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      .....+.   ..|.+++-. .+.++..+.........+..... ..-++.++|+||+|+.+..+.  ..+......+.. 
T Consensus        73 ~~~~~~~---~~d~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~-  144 (181)
T 2fn4_A           73 MREQYMR---AGHGFLLVF-AINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQRQV--PRSEASAFGASH-  144 (181)
T ss_dssp             CHHHHHH---HCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHT-
T ss_pred             HHHHHHh---hCCEEEEEE-eCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccc--CHHHHHHHHHHc-
Confidence            2222222   356666522 23444332221100011101000 112458999999999865432  122233222221 


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                       ..             .++.+||++|.|++++.+++..
T Consensus       145 -~~-------------~~~~~Sa~~~~gv~~l~~~l~~  168 (181)
T 2fn4_A          145 -HV-------------AYFEASAKLRLNVDEAFEQLVR  168 (181)
T ss_dssp             -TC-------------EEEECBTTTTBSHHHHHHHHHH
T ss_pred             -CC-------------eEEEecCCCCCCHHHHHHHHHH
Confidence             11             4678999999999999988764

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.10  E-value=6.5e-11  Score=94.48  Aligned_cols=160  Identities=13%  Similarity=0.093  Sum_probs=78.9

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ..-|+|+|.+|+|||||+|+|+.......   .....|.  ......+....... -..++|+ +|.  ...+.    ..
T Consensus        22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~---~~~t~~~--~~~~~~~~~~~~~~-~~~l~Dt-~G~--~~~~~----~~   88 (189)
T 2gf9_A           22 MFKLLLIGNSSVGKTSFLFRYADDSFTPA---FVSTVGI--DFKVKTVYRHDKRI-KLQIWDT-AGQ--ERYRT----IT   88 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCS---CCCCCCC--EEEEEEEEETTEEE-EEEEEEC-CSC--CSSCC----SG
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCC---cCCceeE--EEEEEEEEECCeEE-EEEEEeC-CCc--HHHhh----hH
Confidence            34688999999999999999985421000   0011111  11101111111111 1246677 332  11111    11


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ...   ....|.+++-.+ +.++..+.........+....  ...++.++|+||+|+.+....  ..+..++..+..+  
T Consensus        89 ~~~---~~~~d~ii~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--  158 (189)
T 2gf9_A           89 TAY---YRGAMGFLLMYD-IANQESFAAVQDWATQIKTYS--WDNAQVILVGNKCDLEDERVV--PAEDGRRLADDLG--  158 (189)
T ss_dssp             GGG---GTTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--
T ss_pred             HHh---ccCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECcccccccCC--CHHHHHHHHHHcC--
Confidence            111   146777777333 333333221111011111110  012458999999999765322  2234444444332  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .             +++.+||++|.|++++.+++..
T Consensus       159 ~-------------~~~~~Sa~~g~gi~~l~~~l~~  181 (189)
T 2gf9_A          159 F-------------EFFEASAKENINVKQVFERLVD  181 (189)
T ss_dssp             C-------------EEEECBTTTTBSHHHHHHHHHH
T ss_pred             C-------------eEEEEECCCCCCHHHHHHHHHH
Confidence            1             4678999999999999988754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.10  E-value=7.4e-11  Score=91.98  Aligned_cols=156  Identities=17%  Similarity=0.121  Sum_probs=77.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      .-++++|.+|+|||||+|+++.....       .....+.+.+.  ..+...+... -..++|+ +|.      ..    
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~-~l~i~Dt-~G~------~~----   67 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCENKFN-------DKHITTLGASFLTKKLNIGGKRV-NLAIWDT-AGQ------ER----   67 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHCCCC-------SSCCCCCSCEEEEEEEESSSCEE-EEEEEEC-CCC------------
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCC-------cCCCCccceEEEEEEEEECCEEE-EEEEEEC-CCc------Hh----
Confidence            35789999999999999999854210       00000111111  1111111111 1245676 331      11    


Q ss_pred             HHHHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          111 LEQLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       111 l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      ...+... ....|.+++-.+ +.++..+.........+....  ...++.++|+||+|+.+..+.  ..+...+..+..+
T Consensus        68 ~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~  142 (170)
T 1z08_A           68 FHALGPIYYRDSNGAILVYD-ITDEDSFQKVKNWVKELRKML--GNEICLCIVGNKIDLEKERHV--SIQEAESYAESVG  142 (170)
T ss_dssp             -----CCSSTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHH--GGGSEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT
T ss_pred             hhhhHHHHhccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECccccccccc--CHHHHHHHHHHcC
Confidence            1111111 146677777333 334433222110001111111  011458999999999765322  2344444444332


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                        .             +++.+||++|.|++++..++..
T Consensus       143 --~-------------~~~~~Sa~~~~gi~~l~~~l~~  165 (170)
T 1z08_A          143 --A-------------KHYHTSAKQNKGIEELFLDLCK  165 (170)
T ss_dssp             --C-------------EEEEEBTTTTBSHHHHHHHHHH
T ss_pred             --C-------------eEEEecCCCCCCHHHHHHHHHH
Confidence              1             3578999999999999988754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.10  E-value=3.9e-11  Score=93.70  Aligned_cols=157  Identities=18%  Similarity=0.125  Sum_probs=79.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-++++|.+|+|||||+|+++.....      ...+  |.+.....+...  ... ..++|+ +|.      ..+.....
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~~~~------~~~~--t~~~~~~~~~~~--~~~-~~~~Dt-~G~------~~~~~~~~   69 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVGEVV------TTIP--TIGFNVETVTYK--NLK-FQVWDL-GGL------TSIRPYWR   69 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSSCC------CCCC--CSSEEEEEEEET--TEE-EEEEEE-CCC------GGGGGGGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCC------CcCC--cCccceEEEEEC--CEE-EEEEEC-CCC------hhhhHHHH
Confidence            45889999999999999999853211      1111  122211111111  111 246777 442      11111111


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ..   ....|.+++-.+ +.++..+.... ++...+... .. .-++.++|+||+|+.+..    ..+++.+.+....-.
T Consensus        70 ~~---~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~  139 (171)
T 1upt_A           70 CY---YSNTDAVIYVVD-SCDRDRIGISKSELVAMLEEE-EL-RKAILVVFANKQDMEQAM----TSSEMANSLGLPALK  139 (171)
T ss_dssp             GG---CTTCSEEEEEEE-TTCCTTHHHHHHHHHHHHTCG-GG-TTCEEEEEEECTTSTTCC----CHHHHHHHHTGGGCT
T ss_pred             HH---hccCCEEEEEEE-CCCHHHHHHHHHHHHHHHhch-hh-CCCEEEEEEECCCCcCCC----CHHHHHHHhCchhcc
Confidence            11   146788777333 33333222111 111111110 00 114589999999998764    234454444321100


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                               .... .++.+||++|.|++++..++..
T Consensus       140 ---------~~~~-~~~~~Sa~~~~gi~~l~~~l~~  165 (171)
T 1upt_A          140 ---------DRKW-QIFKTSATKGTGLDEAMEWLVE  165 (171)
T ss_dssp             ---------TSCE-EEEECCTTTCTTHHHHHHHHHH
T ss_pred             ---------CCce-EEEECcCCCCcCHHHHHHHHHH
Confidence                     0111 5788999999999999988764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.09  E-value=4.8e-11  Score=100.48  Aligned_cols=175  Identities=15%  Similarity=0.067  Sum_probs=83.2

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCC-cccccchhhhhcCCCCcceeeeeeecCcceEee-cchhHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFG-EEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSLV  108 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g-~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~  108 (263)
                      ...-|+|+|.+|||||||+|+|+.    .+..+....++ +|...........  +.. ..++|+ +|..-.. ....+.
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~----~~~~~~~~~~~~~t~~~~~~~~~~~--~~~-i~iiDT-pG~~~~~~~~~~~~   92 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILR----KQAFESKLGSQTLTKTCSKSQGSWG--NRE-IVIIDT-PDMFSWKDHCEALY   92 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHT----SCCSCCCTTSCCCCCSCEEEEEEET--TEE-EEEEEC-CGGGGSSCCCHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhC----CCCcccCCCCCceeeeeEEEEEEeC--CCE-EEEEEC-cCCCCCCCCHHHHH
Confidence            345789999999999999999994    33222222232 2232222222221  111 246787 5532111 112222


Q ss_pred             HHHHHHHH-hccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEe-cCCCCCCCCCcchH-----HHH
Q 024744          109 QALEQLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILN-KVDLVSPERSGDSL-----DEL  181 (263)
Q Consensus       109 ~~l~~~~~-~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlN-K~Dl~~~~~~~~~~-----~~~  181 (263)
                      ..+.+.+. ....+|.+++-.+.. .........  ...+...+......+.++++| |+|+.+.. ....+     +.+
T Consensus        93 ~~i~~~~~~~~~~~d~il~V~d~~-~~~~~~~~~--~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~-~~~~i~~~~~~~~  168 (260)
T 2xtp_A           93 KEVQRCYLLSAPGPHVLLLVTQLG-RYTSQDQQA--AQRVKEIFGEDAMGHTIVLFTHKEDLNGGS-LMDYMHDSDNKAL  168 (260)
T ss_dssp             HHHHHHHHHHTTCCSEEEEEEETT-CCCHHHHHH--HHHHHHHHCGGGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHH
T ss_pred             HHHHHHHHhcCCCCcEEEEEEeCC-CCCHHHHHH--HHHHHHHhCchhhccEEEEEEcccccCCcc-HHHHHHhcchHHH
Confidence            23333322 124678877744432 122211111  011111110000123677777 99998542 10000     113


Q ss_pred             HHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          182 EKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       182 ~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .+.++.+.....         .+.. +++||++|.|++++..++..
T Consensus       169 ~~~~~~~~~~~~---------~~~~-~~~SA~~~~gv~~l~~~i~~  204 (260)
T 2xtp_A          169 SKLVAACGGRIC---------AFNN-RAEGSNQDDQVKELMDCIED  204 (260)
T ss_dssp             HHHHHHTTTCEE---------ECCT-TCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCeEE---------EecC-cccccccHHHHHHHHHHHHH
Confidence            334444432110         1223 78999999999999887763

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.09  E-value=2.1e-10  Score=93.01  Aligned_cols=157  Identities=17%  Similarity=0.153  Sum_probs=78.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      .-|+|+|.+|+|||||+|+++....       ....+.|.+.+..  .+...+... -..++|+ +|.      ..+...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~~~-------~~~~~~t~~~~~~~~~~~~~~~~~-~l~l~Dt-~G~------~~~~~~   91 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQGLF-------PPGQGATIGVDFMIKTVEINGEKV-KLQIWDT-AGQ------ERFRSI   91 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSSC-------CTTCCCCCSEEEEEEEEEETTEEE-EEEEEEE-CCS------GGGHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHhCCC-------CCCCCCccceeEEEEEEEECCEEE-EEEEEEC-CCc------HHHHHH
Confidence            4688999999999999999985421       1111111222211  111111111 1246777 331      222211


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ....   ....|.+++-.+ +.++..+.........+....  ...++.++|+||+|+.+..+.  ..+..++..+..+ 
T Consensus        92 ~~~~---~~~~d~~i~v~D-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~-  162 (201)
T 2ew1_A           92 TQSY---YRSANALILTYD-ITCEESFRCLPEWLREIEQYA--SNKVITVLVGNKIDLAERREV--SQQRAEEFSEAQD-  162 (201)
T ss_dssp             HGGG---STTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHT-
T ss_pred             HHHH---HhcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC-
Confidence            1111   246788777333 333333221110001111110  112458899999999764322  1233333333221 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                       .             .++.+||++|.|++++..++..
T Consensus       163 -~-------------~~~~~Sa~~g~gv~~l~~~l~~  185 (201)
T 2ew1_A          163 -M-------------YYLETSAKESDNVEKLFLDLAC  185 (201)
T ss_dssp             -C-------------CEEECCTTTCTTHHHHHHHHHH
T ss_pred             -C-------------EEEEEeCCCCCCHHHHHHHHHH
Confidence             1             3678999999999999887753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.09  E-value=1.8e-10  Score=92.79  Aligned_cols=160  Identities=15%  Similarity=0.115  Sum_probs=76.1

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ..-|+|+|.+|+|||||+|+++.....   .......|.+.  ....+...+... ...++|+ +|.      ..+....
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~--~~~~~~~~~~~~-~l~i~Dt-~G~------~~~~~~~   94 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKNEFR---ENISATLGVDF--QMKTLIVDGERT-VLQLWDT-AGQ------ERFRSIA   94 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHCCCC-------------C--EEEEEEETTEEE-EEEEEEC-TTC------TTCHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhCCCC---ccCCCCcccee--EEEEEEECCEEE-EEEEEEC-CCC------cchhhhH
Confidence            346889999999999999999854211   01111111111  001111111111 1246777 332      2222333


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCC------CCCcchHHHHHHHH
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSP------ERSGDSLDELEKEI  185 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~------~~~~~~~~~~~~~l  185 (263)
                      ...+   ...|.+++-.+ +.++..+.........+....  ..-++.++|+||+|+.+.      ...  ..+...+..
T Consensus        95 ~~~~---~~~d~iilv~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~NK~Dl~~~~~~~~~~~v--~~~~~~~~~  166 (199)
T 2p5s_A           95 KSYF---RKADGVLLLYD-VTCEKSFLNIREWVDMIEDAA--HETVPIMLVGNKADIRDTAATEGQKCV--PGHFGEKLA  166 (199)
T ss_dssp             HHHH---HHCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHHHTTCCCC--CHHHHHHHH
T ss_pred             HHHH---hhCCEEEEEEE-CCChHHHHHHHHHHHHHHHhc--CCCCCEEEEEECccccccccccccccc--CHHHHHHHH
Confidence            3333   24677777332 333333222110011111111  112458999999999631      111  122223332


Q ss_pred             HhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          186 HEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       186 ~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +..+  +             .++.+||++|.|++++..++..
T Consensus       167 ~~~~--~-------------~~~~~SA~~g~gv~el~~~l~~  193 (199)
T 2p5s_A          167 MTYG--A-------------LFCETSAKDGSNIVEAVLHLAR  193 (199)
T ss_dssp             HHHT--C-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHcC--C-------------eEEEeeCCCCCCHHHHHHHHHH
Confidence            2221  1             4678999999999999887754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.09  E-value=2e-10  Score=91.58  Aligned_cols=162  Identities=14%  Similarity=0.085  Sum_probs=78.3

Q ss_pred             CCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchh
Q 024744           28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHS  106 (263)
Q Consensus        28 ~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~  106 (263)
                      +++...-|+++|.+|||||||+|+|+.....      ....++ .... ...+...+.. ....++|+ +|.      ..
T Consensus        17 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~~~-~~~~l~Dt-~G~------~~   81 (190)
T 3con_A           17 QGMTEYKLVVVGAGGVGKSALTIQLIQNHFV------DEYDPT-IEDSYRKQVVIDGET-CLLDILDT-AGQ------EE   81 (190)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSSCC------SCCCTT-CCEEEEEEEEETTEE-EEEEEEEC-CC---------
T ss_pred             cccceeEEEEECcCCCCHHHHHHHHHcCCCc------cccCCc-cceEEEEEEEECCEE-EEEEEEEC-CCh------HH
Confidence            3455557889999999999999999853210      111111 1110 0011111101 11246676 331      11


Q ss_pred             HHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 024744          107 LVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIH  186 (263)
Q Consensus       107 ~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~  186 (263)
                      +.......   ....|.+++-.+ +.++..+.........+..... ...++.++|+||+|+.+...   ..+.+++..+
T Consensus        82 ~~~~~~~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~~---~~~~~~~~~~  153 (190)
T 3con_A           82 YSAMRDQY---MRTGEGFLCVFA-INNSKSFADINLYREQIKRVKD-SDDVPMVLVGNKCDLPTRTV---DTKQAHELAK  153 (190)
T ss_dssp             -----------CTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCS---CHHHHHHHHH
T ss_pred             HHHHHHHh---hCcCCEEEEEEE-CcCHHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCcCCcccC---CHHHHHHHHH
Confidence            11111111   135677666332 3344332221111111111110 01245899999999987432   2344444444


Q ss_pred             hhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          187 EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       187 ~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ..+  .             +++.+||++|.|++++..++..
T Consensus       154 ~~~--~-------------~~~~~Sa~~~~gi~~l~~~l~~  179 (190)
T 3con_A          154 SYG--I-------------PFIETSAKTRQGVEDAFYTLVR  179 (190)
T ss_dssp             HHT--C-------------CEEECCTTTCTTHHHHHHHHHH
T ss_pred             HcC--C-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence            332  1             4788999999999999988764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.08  E-value=4.5e-10  Score=86.70  Aligned_cols=156  Identities=14%  Similarity=0.089  Sum_probs=76.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      -++++|.+|||||||+|+++.....      .....+ .... ...+...+.. ....++|+ +|.      ..+.....
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~~~------~~~~~~-~~~~~~~~~~~~~~~-~~~~~~D~-~G~------~~~~~~~~   69 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNHFV------DECDPT-IEDSYRKQVVIDGET-CLLDILDT-AGQ------EEYSAMRD   69 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSCC------SCCCTT-CCEEEEEEEEETTEE-EEEEEEEC-CCC------SSCCHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhCcCc------cccCCc-cceEEEEEEEECCEE-EEEEEEEC-CCc------hhhhHHHH
Confidence            4789999999999999999854211      011111 1100 0001111111 11245677 332      11112222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..+.   ..|.+++-.+ +.++............+..... ..-++.++|+||+|+.+...   ..+...+..+..+  .
T Consensus        70 ~~~~---~~~~~i~v~d-~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~nK~Dl~~~~~---~~~~~~~~~~~~~--~  139 (166)
T 2ce2_X           70 QYMR---TGEGFLCVFA-INNTKSFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDLAARTV---ESRQAQDLARSYG--I  139 (166)
T ss_dssp             HHHH---HCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHHT-CSCCCEEEEEECTTCSCCCS---CHHHHHHHHHHHT--C
T ss_pred             Hhhc---cCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEEchhhhhccc---CHHHHHHHHHHcC--C
Confidence            2332   3566555222 3344332221111111111110 01245899999999987432   2333444433332  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   +++.+||++|.|++++..++..
T Consensus       140 -------------~~~~~Sa~~~~gi~~l~~~l~~  161 (166)
T 2ce2_X          140 -------------PYIETSAKTRQGVEDAFYTLVR  161 (166)
T ss_dssp             -------------CEEEECTTTCTTHHHHHHHHHH
T ss_pred             -------------eEEEecCCCCCCHHHHHHHHHH
Confidence                         4778999999999999988764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.08  E-value=1.2e-10  Score=92.33  Aligned_cols=160  Identities=14%  Similarity=0.068  Sum_probs=78.7

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ..-++++|.+|||||||+|+++......     ...+..+.......+...+... -..++|+ +|.      ..+....
T Consensus        10 ~~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~~~~~~   76 (186)
T 2bme_A           10 LFKFLVIGNAGTGKSCLLHQFIEKKFKD-----DSNHTIGVEFGSKIINVGGKYV-KLQIWDT-AGQ------ERFRSVT   76 (186)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCT-----TCCCCSEEEEEEEEEEETTEEE-EEEEEEE-CCS------GGGHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCC-----CCCCccceEEEEEEEEECCEEE-EEEEEeC-CCc------HHHHHHH
Confidence            3468899999999999999998542110     0001100111111111111111 1246777 331      2222222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ...   ...+|.+++-.+ +.++..+.........+.....  .-++.++|+||+|+.+....  ...+..+..+..+  
T Consensus        77 ~~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--  146 (186)
T 2bme_A           77 RSY---YRGAAGALLVYD-ITSRETYNALTNWLTDARMLAS--QNIVIILCGNKKDLDADREV--TFLEASRFAQENE--  146 (186)
T ss_dssp             HTT---STTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--
T ss_pred             HHH---HhcCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEECccccccccc--CHHHHHHHHHHcC--
Confidence            111   246787777333 3333332211100011111101  12458999999999754322  2233443333321  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .             .++.+||++|.|++++..++..
T Consensus       147 ~-------------~~~~~Sa~~~~gi~~l~~~l~~  169 (186)
T 2bme_A          147 L-------------MFLETSALTGENVEEAFVQCAR  169 (186)
T ss_dssp             C-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             C-------------EEEEecCCCCCCHHHHHHHHHH
Confidence            1             4678999999999999888764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.07  E-value=1.1e-10  Score=93.43  Aligned_cols=163  Identities=18%  Similarity=0.170  Sum_probs=79.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++++|.+|||||||+++++...    .....+    |.+.....+...  +.. ..++|+ +|.      ..+......
T Consensus        25 ki~~vG~~~vGKSsli~~l~~~~----~~~~~~----t~~~~~~~~~~~--~~~-~~i~Dt-~G~------~~~~~~~~~   86 (190)
T 1m2o_B           25 KLLFLGLDNAGKTTLLHMLKNDR----LATLQP----TWHPTSEELAIG--NIK-FTTFDL-GGH------IQARRLWKD   86 (190)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC----CCCCCC----CCSCEEEEEEET--TEE-EEEEEC-CCS------GGGTTSGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC----CCcccc----CCCCCeEEEEEC--CEE-EEEEEC-CCC------HHHHHHHHH
Confidence            67899999999999999999532    111111    122221112111  111 246676 332      111001111


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      .   ....|.+++-.+ +.++..+.... +....+... .. .-+|.++|.||+|+.+..    ..+++.+.++......
T Consensus        87 ~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~  156 (190)
T 1m2o_B           87 Y---FPEVNGIVFLVD-AADPERFDEARVELDALFNIA-EL-KDVPFVILGNKIDAPNAV----SEAELRSALGLLNTTG  156 (190)
T ss_dssp             G---CTTCCEEEEEEE-TTCGGGHHHHHHHHHHHHTCG-GG-TTCCEEEEEECTTSTTCC----CHHHHHHHTTCSSCCC
T ss_pred             H---HhcCCEEEEEEE-CCChHHHHHHHHHHHHHHcch-hh-cCCCEEEEEECCCCcCCC----CHHHHHHHhCCccccc
Confidence            1   136677777333 33443322211 111111100 00 114589999999998632    2345554443221000


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .   .........+++.+||++|.|++++.+++.+
T Consensus       157 ~---~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  188 (190)
T 1m2o_B          157 S---QRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  188 (190)
T ss_dssp             ------CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             c---ccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence            0   0000111235788999999999999988753

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.07  E-value=2.2e-11  Score=99.46  Aligned_cols=159  Identities=14%  Similarity=0.101  Sum_probs=73.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -|+|+|.+|||||||+|+|+.....   .......+.+. .........+ ......++|+ +|.      ..+. .+..
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~~~~---~~~~~t~~~~~-~~~~~~~~~~-~~~~~~l~Dt-~G~------~~~~-~~~~   79 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDGRFE---KNYNATVGAVN-HPVTFLDDQG-NVIKFNVWDT-AGQ------EKKA-VLKD   79 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTCSTT---CEEETTTTEEE-EEEEEEBTTS-CEEEEEEEEE-CSG------GGTS-CCCH
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC---CCCCCccceee-EEEEEEeCCC-cEEEEEEEec-CCc------hhhc-hHHH
Confidence            5789999999999999999853211   11122222111 0000011111 1011256777 332      1111 1111


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ..  ....|.+++-.+ +.++............+.....  .-++.++|+||+|+.+..+.  ..+......+..     
T Consensus        80 ~~--~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~-----  147 (218)
T 4djt_A           80 VY--YIGASGAILFFD-VTSRITCQNLARWVKEFQAVVG--NEAPIVVCANKIDIKNRQKI--SKKLVMEVLKGK-----  147 (218)
T ss_dssp             HH--HTTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHC--SSSCEEEEEECTTCC----C--CHHHHHHHTTTC-----
T ss_pred             HH--hhcCCEEEEEEe-CCCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECCCCcccccc--CHHHHHHHHHHc-----
Confidence            11  135677777322 3333322211100011111111  11458999999999865321  112222221111     


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                ...++.+||++|.|++++..++..
T Consensus       148 ----------~~~~~~~Sa~~g~gv~~l~~~l~~  171 (218)
T 4djt_A          148 ----------NYEYFEISAKTAHNFGLPFLHLAR  171 (218)
T ss_dssp             ----------CCEEEEEBTTTTBTTTHHHHHHHH
T ss_pred             ----------CCcEEEEecCCCCCHHHHHHHHHH
Confidence                      124788999999999999888764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.06  E-value=3.5e-11  Score=94.66  Aligned_cols=161  Identities=14%  Similarity=0.048  Sum_probs=78.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      .-++++|.+|||||||+|+++......     ...+  |.+.+.  ..+...+....-..++|+ +|.      ..+...
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~~~~~~-----~~~~--t~~~~~~~~~~~~~~~~~~~~~~~Dt-~G~------~~~~~~   72 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQETFGK-----QYKQ--TIGLDFFLRRITLPGNLNVTLQIWDI-GGQ------TIGGKM   72 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHGGGTTH-----HHHH--TTTSSEEEEEEEETTTEEEEEEEEEC-TTC------CTTCTT
T ss_pred             EEEEEECcCCCCHHHHHHHHHhCcCCC-----CCCC--ceeEEEEEEEEEeCCCCEEEEEEEEC-CCC------ccccch
Confidence            457899999999999999998532100     0000  111111  111111100011246777 332      111111


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee-eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR-LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~-~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      ....+   ...|.+++-.+ +.++..+.........+..... .....+.++|+||+|+.+....  ..+...+..+..+
T Consensus        73 ~~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~--~~~~~~~~~~~~~  146 (178)
T 2hxs_A           73 LDKYI---YGAQGVLLVYD-ITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI--KPEKHLRFCQENG  146 (178)
T ss_dssp             HHHHH---TTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHT
T ss_pred             hhHHH---hhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccccccc--CHHHHHHHHHHcC
Confidence            22222   36788777332 3444333221110111111100 0111226789999999764322  2233444333332


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                        .             +++.+||++|.|++++..++...
T Consensus       147 --~-------------~~~~~Sa~~~~gi~~l~~~l~~~  170 (178)
T 2hxs_A          147 --F-------------SSHFVSAKTGDSVFLCFQKVAAE  170 (178)
T ss_dssp             --C-------------EEEEECTTTCTTHHHHHHHHHHH
T ss_pred             --C-------------cEEEEeCCCCCCHHHHHHHHHHH
Confidence              1             36789999999999999888653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.06  E-value=5.4e-10  Score=96.37  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=21.3

Q ss_pred             ecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHc
Q 024744           15 DETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+|++.|++..++++.++.+ +|+|++|||||||+|+|..
T Consensus         2 ~~l~~~~~~~~~l~~~~~~I-~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A            2 SNLPNQVHRKSVKKGFEFTL-MVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             ----------------CEEE-EEEEETTSSHHHHHHHHHC
T ss_pred             CCCcceECCEEEEcCCCEEE-EEECCCCCCHHHHHHHHhC
Confidence            47899999999999999887 8999999999999999974

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.06  E-value=5e-10  Score=89.25  Aligned_cols=158  Identities=16%  Similarity=0.052  Sum_probs=77.2

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      ..--++|+|.+|||||||+++++...-..     ...+  |.+.-...+...+... ...++|+ +|.      ..+.  
T Consensus        19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~-----~~~~--t~~~~~~~~~~~~~~~-~l~i~Dt-~G~------~~~~--   81 (184)
T 3ihw_A           19 PELKVGIVGNLSSGKSALVHRYLTGTYVQ-----EESP--EGGRFKKEIVVDGQSY-LLLIRDE-GGP------PELQ--   81 (184)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHSSCCC-----CCCT--TCEEEEEEEEETTEEE-EEEEEEC-SSS------CCHH--
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCCCCC-----CcCC--CcceEEEEEEECCEEE-EEEEEEC-CCC------hhhh--
Confidence            33467899999999999999998542100     0000  0110000111111111 1245666 332      1111  


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                         ..   ...|.+++-.+ +.++..+.........+...... .-++.++|.||+|+.+........+...+..+..+ 
T Consensus        82 ---~~---~~~~~~i~v~d-~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~-  152 (184)
T 3ihw_A           82 ---FA---AWVDAVVFVFS-LEDEISFQTVYNYFLRLCSFRNA-SEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLK-  152 (184)
T ss_dssp             ---HH---HHCSEEEEEEE-TTCHHHHHHHHHHHHHHHTTSCG-GGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTT-
T ss_pred             ---ee---cCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccccCHHHHHHHHHHcC-
Confidence               22   23566666222 34444333211111112111100 11458899999999633221123344444444332 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .             ...+.+||++|.|++++..++..
T Consensus       153 ~-------------~~~~e~Sa~~~~gv~~lf~~l~~  176 (184)
T 3ihw_A          153 R-------------CTYYETCATYGLNVERVFQDVAQ  176 (184)
T ss_dssp             T-------------CEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             C-------------CeEEEecCCCCCCHHHHHHHHHH
Confidence            1             24678999999999999887754

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.06  E-value=3.9e-10  Score=102.24  Aligned_cols=24  Identities=33%  Similarity=0.354  Sum_probs=20.8

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ...-++++|.+|+|||||+++|+.
T Consensus        16 ~~~~i~iiG~~d~GKSTL~~~Ll~   39 (439)
T 3j2k_7           16 EHVNVVFIGHVDAGKSTIGGQIMY   39 (439)
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHH
Confidence            445788999999999999999964

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.05  E-value=1.4e-10  Score=93.58  Aligned_cols=158  Identities=16%  Similarity=0.101  Sum_probs=76.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      .-|+|+|.+|||||||+|+|+......     ...+  +.+.+..  .+...+.. .-..++|+ +|.      ..+...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~--t~~~~~~~~~~~~~~~~-~~~~l~Dt-~G~------~~~~~~   73 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNKKFSN-----QYKA--TIGADFLTKEVMVDDRL-VTMQIWDT-AGQ------ERFQSL   73 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCS-----SCCC--CCSEEEEEEEEESSSCE-EEEEEEEE-CSS------GGGSCS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCCCCC-----CCCC--cccceEEEEEEEECCEE-EEEEEEeC-CCc------HHHHHh
Confidence            468899999999999999998542110     0011  1111111  11111111 11246777 331      111000


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee--eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR--LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI  188 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~--~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~  188 (263)
                      ....   ....|.+++-.+ +.++..+.........+.....  ....++.++|+||+|+.+...   ..+......+..
T Consensus        74 ~~~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~  146 (207)
T 1vg8_A           74 GVAF---YRGADCCVLVFD-VTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV---ATKRAQAWCYSK  146 (207)
T ss_dssp             CCGG---GTTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCS---CHHHHHHHHHHT
T ss_pred             HHHH---HhCCcEEEEEEE-CCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccccc---CHHHHHHHHHhc
Confidence            0111   135787777332 3334332111100011111000  001145899999999985432   223333333211


Q ss_pred             cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                       ..             .+++.+||++|.|++++..++.
T Consensus       147 -~~-------------~~~~~~Sa~~g~gi~~l~~~l~  170 (207)
T 1vg8_A          147 -NN-------------IPYFETSAKEAINVEQAFQTIA  170 (207)
T ss_dssp             -TS-------------CCEEECBTTTTBSHHHHHHHHH
T ss_pred             -CC-------------ceEEEEeCCCCCCHHHHHHHHH
Confidence             11             2478899999999999988875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.05  E-value=3.9e-10  Score=88.57  Aligned_cols=159  Identities=14%  Similarity=0.150  Sum_probs=77.9

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      +.+.|+++|.+|||||||+|+++...    .. ....++.+.......+...  +.. ..++|+ +|.  .....    .
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~----~~-~~~~~~~~~~~~~~~~~~~--~~~-~~l~Dt-~G~--~~~~~----~   71 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSK----VT-EQEAGGITQHIGAYQVTVN--DKK-ITFLDT-PGH--EAFTT----M   71 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTC----SS-CSSCCSSSTTCCCCEEEET--TEE-EEESCC-CSS--SSSSC----S
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc----cc-cCCCCceeEeeeEEEEEeC--Cce-EEEEEC-CCC--HHHHH----H
Confidence            34578899999999999999998531    10 0111121122111111111  111 135666 332  11110    0


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCc--hhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744          111 LEQLVQRKERLDHILLETTGLANP--APLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI  188 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p--~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~  188 (263)
                      ..   .....+|.+++-.+ +.++  ....+.+   ..+..     ..++.++|+||+|+.+..     .+++...++..
T Consensus        72 ~~---~~~~~~d~~i~v~d-~~~~~~~~~~~~l---~~~~~-----~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~  134 (178)
T 2lkc_A           72 RA---RGAQVTDIVILVVA-ADDGVMPQTVEAI---NHAKA-----ANVPIIVAINKMDKPEAN-----PDRVMQELMEY  134 (178)
T ss_dssp             CC---SSCCCCCEEEEEEE-TTCCCCHHHHHHH---HHHGG-----GSCCEEEEEETTTSSCSC-----HHHHHHHHTTT
T ss_pred             HH---HHHhhCCEEEEEEE-CCCCCcHHHHHHH---HHHHh-----CCCCEEEEEECccCCcCC-----HHHHHHHHHhc
Confidence            00   11235677776433 2221  1111111   11111     114589999999998753     23444444332


Q ss_pred             cCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          189 NSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       189 ~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ...+    ..++  ....++.+||++|.|++++.+++..
T Consensus       135 ~~~~----~~~~--~~~~~~~~Sa~~~~gv~~l~~~l~~  167 (178)
T 2lkc_A          135 NLVP----EEWG--GDTIFCKLSAKTKEGLDHLLEMILL  167 (178)
T ss_dssp             TCCB----TTTT--SSEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             CcCh----hHcC--CcccEEEEecCCCCCHHHHHHHHHH
Confidence            2111    0000  1135789999999999999988754

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.05  E-value=7.1e-11  Score=104.13  Aligned_cols=27  Identities=22%  Similarity=0.368  Sum_probs=23.9

Q ss_pred             CcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           29 DVSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        29 ~~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ....|.|+|+|.+|||||||+|+|++.
T Consensus        28 ~~~~~~I~vvG~~~~GKSSLln~L~g~   54 (353)
T 2x2e_A           28 DLDLPQIAVVGGQSAGKSSVLENFVGR   54 (353)
T ss_dssp             GCCCCEEEEECBTTSSHHHHHHTTTTS
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHhCC
Confidence            456789999999999999999999853

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.05  E-value=2.3e-11  Score=98.63  Aligned_cols=159  Identities=13%  Similarity=0.037  Sum_probs=76.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -|+++|.+|+|||||+++++...-      .....+++.......+...+.. ....++|+ +|.      +.+......
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~-~~l~i~Dt-~G~------~~~~~~~~~   97 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTTNAF------PGEYIPTVFDNYSANVMVDGKP-VNLGLWDT-AGL------EDYDRLRPL   97 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCC------CC-CCCCSEEEEEEEEECC-CE-EEEEEEEE-CCS------GGGTTTGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCCC------CCCcCCeecceeEEEEEECCEE-EEEEEEEC-CCc------hhhHHHHHH
Confidence            678999999999999999985421      0111111111000011111111 11246777 442      111111111


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCc----------chHHHHH
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSG----------DSLDELE  182 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~----------~~~~~~~  182 (263)
                         .....|.+++-.+ +.++..+.... .....+....   ..++.++|+||+|+.+.....          ...++..
T Consensus        98 ---~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~  170 (204)
T 4gzl_A           98 ---SYPQTDVFLICFS-LVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL  170 (204)
T ss_dssp             ---GCTTCSEEEEEEE-TTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHH
T ss_pred             ---HhccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccchhhhhhhhccccccccHHHHH
Confidence               1246788777332 34444433221 1111122111   124589999999998753100          0011111


Q ss_pred             HHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          183 KEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       183 ~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ...+..              +..+++.+||++|.|++++.+++..
T Consensus       171 ~~~~~~--------------~~~~~~~~SA~~g~gi~~l~~~l~~  201 (204)
T 4gzl_A          171 AMAKEI--------------GAVKYLECSALTQRGLKTVFDEAIR  201 (204)
T ss_dssp             HHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHhc--------------CCcEEEEeeCCCCCCHHHHHHHHHH
Confidence            111111              2234788999999999999988754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.05  E-value=1.9e-10  Score=94.15  Aligned_cols=54  Identities=20%  Similarity=0.129  Sum_probs=34.5

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +|.++|.||+|+.+..+.  ..++........+  +             +++.+||++|.|++++..++..
T Consensus       146 ~piilVgNK~DL~~~r~v--~~~e~~~~a~~~~--~-------------~~~e~SAk~g~~v~elf~~l~~  199 (211)
T 2g3y_A          146 IPIILVGNKSDLVRCREV--SVSEGRACAVVFD--C-------------KFIETSAAVQHNVKELFEGIVR  199 (211)
T ss_dssp             SCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--C-------------EEEECBTTTTBSHHHHHHHHHH
T ss_pred             CcEEEEEEChHHhcCceE--eHHHHHHHHHHcC--C-------------EEEEEeCCCCCCHHHHHHHHHH
Confidence            458999999999754322  1222222111211  1             3678999999999999988754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.05  E-value=7.5e-11  Score=95.67  Aligned_cols=157  Identities=13%  Similarity=0.108  Sum_probs=76.9

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ..-|+|+|.+|+|||||+|+|+...    .. ....+.  .+.+..  .+...+... -..++|+ +|.      ..+..
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~~----~~-~~~~~~--~~~~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~~~~   84 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVEDK----FN-PSFITT--IGIDFKIKTVDINGKKV-KLQLWDT-AGQ------ERFRT   84 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHCC----CC-CSSSCC--CSCCEEEEEEEETTEEE-EEEEECC-TTG------GGGTC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC----CC-cccCCc--ccceEEEEEEEECCEEE-EEEEEeC-CCc------HHHHH
Confidence            3468899999999999999998532    10 011111  221111  111111001 1246676 332      11111


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      .....+   ...|.+++-.+ +.++..+.........+....  ...++.++|+||+|+.....   ..+...+..+..+
T Consensus        85 ~~~~~~---~~~d~ii~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~  155 (213)
T 3cph_A           85 ITTAYY---RGAMGIILVYD-VTDERTFTNIKQWFKTVNEHA--NDEAQLLLVGNKSDMETRVV---TADQGEALAKELG  155 (213)
T ss_dssp             CCHHHH---TTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHT--TTCSEEEEEEECTTCSSCCS---CHHHHHHHHHHHT
T ss_pred             HHHHHh---ccCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCccccc---CHHHHHHHHHHcC
Confidence            112222   36777777332 333332211110001111110  11245899999999954321   2233333333321


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                        .             +++.+||++|.|++++..++..
T Consensus       156 --~-------------~~~~~Sa~~~~gi~~l~~~l~~  178 (213)
T 3cph_A          156 --I-------------PFIESSAKNDDNVNEIFFTLAK  178 (213)
T ss_dssp             --C-------------CEEECBTTTTBSSHHHHHHHHH
T ss_pred             --C-------------EEEEEeCCCCCCHHHHHHHHHH
Confidence              1             4788999999999999887753

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.04  E-value=2.1e-10  Score=100.17  Aligned_cols=156  Identities=13%  Similarity=0.058  Sum_probs=80.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -|+|+|.+|+|||||+++++.    .++.  ...+  |++.+...+...  ... ..++|+ +|.      ..+......
T Consensus       167 kI~ivG~~~vGKSsLl~~l~~----~~~~--~~~p--T~~~~~~~~~~~--~~~-l~i~Dt-~G~------~~~~~~~~~  228 (329)
T 3o47_A          167 RILMVGLDAAGKTTILYKLKL----GEIV--TTIP--TIGFNVETVEYK--NIS-FTVWDV-GGQ------DKIRPLWRH  228 (329)
T ss_dssp             EEEEEESTTSSHHHHHHHTCS----SCCE--EEEE--ETTEEEEEEEET--TEE-EEEEEC-C-----------CCSHHH
T ss_pred             eEEEECCCCccHHHHHHHHhC----CCCC--Cccc--ccceEEEEEecC--cEE-EEEEEC-CCC------HhHHHHHHH
Confidence            578999999999999999984    3221  1111  233333222221  111 256787 331      111112222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      .+   ...|.+++-.+ +.++..+.... ++...+... .. .-++.++|+||+|+.+...    .+++...+.......
T Consensus       229 ~~---~~ad~vilV~D-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilV~NK~Dl~~~~~----~~~i~~~~~~~~~~~  298 (329)
T 3o47_A          229 YF---QNTQGLIFVVD-SNDRERVNEAREELMRMLAED-EL-RDAVLLVFANKQDLPNAMN----AAEITDKLGLHSLRH  298 (329)
T ss_dssp             HH---TTEEEEEEEEE-TTCSSSHHHHHHHHHHHHTCG-GG-TTCEEEEEEECTTSTTCCC----HHHHHHHHTCTTCCS
T ss_pred             Hh---ccCCEEEEEEE-CCchHHHHHHHHHHHHHHhhh-cc-CCCeEEEEEECccCCcccC----HHHHHHHhchhhhhc
Confidence            22   35677777333 33333222111 111111111 11 1145899999999987642    344544443211100


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                ..-.++.+||++|.|++++.++|..
T Consensus       299 ----------~~~~~~~vSAk~g~gi~el~~~l~~  323 (329)
T 3o47_A          299 ----------RNWYIQATCATSGDGLYEGLDWLSN  323 (329)
T ss_dssp             ----------SCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             ----------CCCEEEEEECCCCcCHHHHHHHHHH
Confidence                      1125788999999999999988764

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.04  E-value=6.1e-11  Score=108.54  Aligned_cols=153  Identities=22%  Similarity=0.276  Sum_probs=86.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecch---h--H
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKH---S--L  107 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~---~--~  107 (263)
                      .-|+|+|.||||||||+|+|+    +.+.+++.+.+|+|++.....+...  +.. ..++|+ +|... ....   .  +
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~----~~~~a~vs~~~gTT~d~~~~~i~~~--g~~-~~l~DT-aG~~~-~~~~~ve~~gi  314 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLL----NEDRAIVTDIPGTTRDVISEEIVIR--GIL-FRIVDT-AGVRS-ETNDLVERLGI  314 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHH----HHTBCCCCCSSCCSSCSCCEEEEET--TEE-EEEEES-SCCCS-SCCTTCCCCCH
T ss_pred             CEEEEECcCCCcHHHHHHHHH----CCCCCccCCCCCeeeeeEEEEEecC--CeE-EEEEEC-CCccc-cchhhHHHHHH
Confidence            358899999999999999999    4444566777887665544333332  221 246787 44310 1110   0  1


Q ss_pred             HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      ...+. .+   ..+|.+++-.+. .++....+...+ ..+.       -++.++|+||+|+.+..    ..+++.+.+  
T Consensus       315 ~~~~~-~~---~~aD~vl~VvD~-s~~~s~~~~~il-~~l~-------~~piivV~NK~DL~~~~----~~~~~~~~~--  375 (482)
T 1xzp_A          315 ERTLQ-EI---EKADIVLFVLDA-SSPLDEEDRKIL-ERIK-------NKRYLVVINKVDVVEKI----NEEEIKNKL--  375 (482)
T ss_dssp             HHHHH-HH---HHCSEEEEEEET-TSCCCHHHHHHH-HHHT-------TSSEEEEEEECSSCCCC----CHHHHHHHH--
T ss_pred             HHHHH-Hh---hcccEEEEEecC-CCCCCHHHHHHH-HHhc-------CCCEEEEEECccccccc----CHHHHHHHh--
Confidence            11222 22   356777774332 222221111111 1111       13489999999997642    123333321  


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                        +.            ..+++.+||++|.|+++|.+++..
T Consensus       376 --~~------------~~~~i~iSAktg~Gi~eL~~~l~~  401 (482)
T 1xzp_A          376 --GT------------DRHMVKISALKGEGLEKLEESIYR  401 (482)
T ss_dssp             --TC------------STTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             --cC------------CCcEEEEECCCCCCHHHHHHHHHH
Confidence              10            124788999999999999988765

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.03  E-value=1.1e-10  Score=92.48  Aligned_cols=156  Identities=13%  Similarity=0.085  Sum_probs=61.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      .-|+++|.+|+|||||+++++..    +.. ....+  |.+.+..  .+...+... -..++|+ +|.      ..    
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~----~~~-~~~~~--t~~~~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~----   69 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSED----AFN-STFIS--TIGIDFKIRTIELDGKRI-KLQIWDT-AGQ------ER----   69 (183)
T ss_dssp             EEEEEECCCCC---------------------CHHH--HHCEEEEEEEEEETTEEE-EEEEEEC----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC----CCC-CCCCC--cccceeEEEEEEECCEEE-EEEEEcC-CCC------hh----
Confidence            35889999999999999999842    110 01111  1221111  111111011 1246676 331      11    


Q ss_pred             HHHHHH-hccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          111 LEQLVQ-RKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       111 l~~~~~-~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      ...+.. .....|.+++-.+ +.++..+.........+....  ..-++.++|+||+|+.+..+.  ..+...+..+..+
T Consensus        70 ~~~~~~~~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~  144 (183)
T 2fu5_C           70 FRTITTAYYRGAMGIMLVYD-ITNEKSFDNIRNWIRNIEEHA--SADVEKMILGNKCDVNDKRQV--SKERGEKLALDYG  144 (183)
T ss_dssp             ----CCTTTTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEEC--CCSCCCS--CHHHHHHHHHHHT
T ss_pred             hhhhHHHHHhcCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECccCCccCcC--CHHHHHHHHHHcC
Confidence            111111 1146788777333 344443322211111111110  011458999999999765322  2344444444332


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                        .             +++.+||++|.|++++..++..
T Consensus       145 --~-------------~~~~~Sa~~~~~i~~l~~~l~~  167 (183)
T 2fu5_C          145 --I-------------KFMETSAKANINVENAFFTLAR  167 (183)
T ss_dssp             --C-------------EEEECCC---CCHHHHHHHHHH
T ss_pred             --C-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence              1             4678999999999999888753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.03  E-value=4e-10  Score=90.46  Aligned_cols=157  Identities=20%  Similarity=0.157  Sum_probs=77.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      .-|+++|.+|+|||||+++++.....      .....+ ..... ..+...+... ...++|+ +|..  .     ....
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~~~~-~~~l~Dt-~G~~--~-----~~~~   92 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTKRFI------WEYDPT-LESTYRHQATIDDEVV-SMEILDT-AGQE--D-----TIQR   92 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCC------SCCCTT-CCEEEEEEEEETTEEE-EEEEEEC-CCCC--C-----CHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCC------cccCCC-CCceEEEEEEECCEEE-EEEEEEC-CCCC--c-----ccch
Confidence            35789999999999999999854210      000111 11110 0011111111 1246777 4421  1     1122


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      ....   ...|.+++-.+ +.++..+.........+..... ..-+|.++|+||+|+.+..+.  ..+...+..+..+  
T Consensus        93 ~~~~---~~~d~iilv~D-~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--  163 (196)
T 2atv_A           93 EGHM---RWGEGFVLVYD-ITDRGSFEEVLPLKNILDEIKK-PKNVTLILVGNKADLDHSRQV--STEEGEKLATELA--  163 (196)
T ss_dssp             HHHH---HHCSEEEEEEE-TTCHHHHHTHHHHHHHHHHHHT-TSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--
T ss_pred             hhhh---ccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECccccccccc--CHHHHHHHHHHhC--
Confidence            2222   24577666222 3344433221110111111100 112458999999999764322  2233333333331  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcc-hhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDAT-HVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~-~~~~l~~~l~~  227 (263)
                      .             .++.+||++|. |++++..++..
T Consensus       164 ~-------------~~~~~Sa~~g~~gi~~l~~~l~~  187 (196)
T 2atv_A          164 C-------------AFYECSACTGEGNITEIFYELCR  187 (196)
T ss_dssp             S-------------EEEECCTTTCTTCHHHHHHHHHH
T ss_pred             C-------------eEEEECCCcCCcCHHHHHHHHHH
Confidence            1             46789999999 99999888754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.03  E-value=7.5e-10  Score=101.46  Aligned_cols=170  Identities=17%  Similarity=0.141  Sum_probs=82.8

Q ss_pred             ccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeE--EEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee
Q 024744           25 HENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRI--AVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT  102 (263)
Q Consensus        25 ~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~--~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~  102 (263)
                      .....+....++++|.+|+|||||+++|++.......  .......|.|++.....+...  +. ...++|+ +|-    
T Consensus        12 ~~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~--~~-~i~iiDt-PGh----   83 (482)
T 1wb1_A           12 RPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE--NY-RITLVDA-PGH----   83 (482)
T ss_dssp             -CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEET--TE-EEEECCC-SSH----
T ss_pred             chhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC--CE-EEEEEEC-CCh----
Confidence            3444456678999999999999999999853210000  111222333333222112111  11 1246777 442    


Q ss_pred             cchhHHHHHHHHHHhccCCcEEEEcccCCCC--chhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHH
Q 024744          103 VKHSLVQALEQLVQRKERLDHILLETTGLAN--PAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDE  180 (263)
Q Consensus       103 ~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~--p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~  180 (263)
                        .++...+   ..-...+|.+++-.+....  +........     .....    ++.++++||+|+.+++    ..+.
T Consensus        84 --~~~~~~~---~~~~~~aD~~ilVvda~~g~~~qt~e~l~~-----~~~~~----ip~IvviNK~Dl~~~~----~~~~  145 (482)
T 1wb1_A           84 --ADLIRAV---VSAADIIDLALIVVDAKEGPKTQTGEHMLI-----LDHFN----IPIIVVITKSDNAGTE----EIKR  145 (482)
T ss_dssp             --HHHHHHH---HHHTTSCCEEEEEEETTTCSCHHHHHHHHH-----HHHTT----CCBCEEEECTTSSCHH----HHHH
T ss_pred             --HHHHHHH---HHHHhhCCEEEEEEecCCCccHHHHHHHHH-----HHHcC----CCEEEEEECCCcccch----hHHH
Confidence              2333322   2223567888774432211  221111111     11111    3479999999998753    2333


Q ss_pred             HHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       181 ~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +.+.++.+....       ..+...+++++||++|+|+++|.++|..
T Consensus       146 ~~~~l~~~l~~~-------~~~~~~~ii~vSA~~g~gI~~L~~~L~~  185 (482)
T 1wb1_A          146 TEMIMKSILQST-------HNLKNSSIIPISAKTGFGVDELKNLIIT  185 (482)
T ss_dssp             HHHHHHHHHHHS-------SSGGGCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhh-------cccccceEEEEECcCCCCHHHHHHHHHH
Confidence            333333221000       0011235789999999999999988775

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.02  E-value=2.2e-10  Score=93.48  Aligned_cols=159  Identities=13%  Similarity=0.073  Sum_probs=72.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      .-|+++|.+|+|||||+++++..    +..  .....+ .... ...+...+... ...++|+ +|.      ..+....
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~~----~~~--~~~~~t-~~~~~~~~~~~~~~~~-~l~l~Dt-~G~------~~~~~~~   99 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFADG----AFP--ESYTPT-VFERYMVNLQVKGKPV-HLHIWDT-AGQ------DDYDRLR   99 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC-------------CCC-CCEEEEEEEEETTEEE-EEEEEEC-----------------
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC----CCC--CCCCCc-cceeEEEEEEECCEEE-EEEEEEC-CCc------hhhhHHH
Confidence            46889999999999999999942    211  111111 1100 00011111111 1246676 331      1111111


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCc----------chHHH
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSG----------DSLDE  180 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~----------~~~~~  180 (263)
                      ...+   ...|.+++-.+ +.++..+.... .....+....   .-++.++|+||+|+.+.....          ...++
T Consensus       100 ~~~~---~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~  172 (214)
T 2j1l_A          100 PLFY---PDASVLLLCFD-VTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHR  172 (214)
T ss_dssp             --------CEEEEEEEEE-TTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHH
T ss_pred             HHHh---ccCCEEEEEEE-CcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhccchhhhhhcccccCcccHHH
Confidence            1111   35677777332 34444433221 1111121111   124589999999998753100          00111


Q ss_pred             HHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       181 ~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ..+..+.+              +...++.+||++|.|++++..++..
T Consensus       173 ~~~~~~~~--------------~~~~~~~~SA~~g~gi~el~~~l~~  205 (214)
T 2j1l_A          173 GQEMARSV--------------GAVAYLECSARLHDNVHAVFQEAAE  205 (214)
T ss_dssp             HHHHHHHT--------------TCSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHhc--------------CCCEEEEecCCCCCCHHHHHHHHHH
Confidence            12222221              1225788999999999999988764

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=98.59  E-value=2.8e-11  Score=97.93  Aligned_cols=22  Identities=23%  Similarity=0.131  Sum_probs=19.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .-|+++|.+|+|||||+++++.
T Consensus        31 ~ki~v~G~~~~GKSsli~~l~~   52 (204)
T 3th5_A           31 IKCVVVGDGAVGKTCLLISYTT   52 (204)
Confidence            3578999999999999999984

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.02  E-value=7.8e-10  Score=99.36  Aligned_cols=47  Identities=19%  Similarity=0.210  Sum_probs=36.6

Q ss_pred             CCceEEEecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...+|.+++++++|++..+++++++.+ +|+|++|||||||+|.|++.
T Consensus         8 ~~~~l~~~~l~~~y~~~~vl~~vsf~I-~lvG~sGaGKSTLln~L~g~   54 (418)
T 2qag_C            8 LEGYVGFANLPNQVYRKSVKRGFEFTL-MVVGESGLGKSTLINSLFLT   54 (418)
T ss_dssp             -------CCCCCCTTTTTCC-CCCEEE-EEECCTTSSHHHHHHHHTTC
T ss_pred             CcCcEEEEecceeECCEEEecCCCEEE-EEECCCCCcHHHHHHHHhCC
Confidence            346799999999999999999999887 89999999999999999854

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.02  E-value=4e-10  Score=97.33  Aligned_cols=27  Identities=22%  Similarity=0.393  Sum_probs=24.2

Q ss_pred             CcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           29 DVSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        29 ~~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ....|.|+|+|.+|||||||+|+|++.
T Consensus        21 ~~~~~~I~vvG~~~~GKSTlln~l~g~   47 (315)
T 1jwy_B           21 PLDLPQIVVVGSQSSGKSSVLENIVGR   47 (315)
T ss_dssp             TTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence            467889999999999999999999943

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.01  E-value=1.6e-10  Score=93.44  Aligned_cols=156  Identities=15%  Similarity=0.097  Sum_probs=76.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      .-|+|+|.+|+|||||+|+|+......     ...+.  .+.+..  .+...+... -..++|+ +|.      ..+...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~~~~-----~~~~t--~~~~~~~~~~~~~~~~~-~~~l~Dt-~G~------~~~~~~   73 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDDTYTN-----DYIST--IGVDFKIKTVELDGKTV-KLQIWDT-AGQ------ERFRTI   73 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHCCCCT-----TCCCS--SCCCEEEEEEEETTEEE-EEEEECC-TTT------TTTTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCC-----CCCCc--ccceeEEEEEEECCEEE-EEEEEeC-CCh------HHHHHH
Confidence            468899999999999999998542100     00111  111111  111111111 1245676 331      111001


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ....   ....|.+++-.+ +.++..+.........+....  ...++.++|+||+|+.+....  ..+...+..+..+ 
T Consensus        74 ~~~~---~~~~d~vilv~d-~~~~~s~~~~~~~~~~i~~~~--~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~-  144 (206)
T 2bcg_Y           74 TSSY---YRGSHGIIIVYD-VTDQESFNGVKMWLQEIDRYA--TSTVLKLLVGNKCDLKDKRVV--EYDVAKEFADANK-  144 (206)
T ss_dssp             CGGG---GTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHS--CTTCEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT-
T ss_pred             HHHh---ccCCCEEEEEEE-CcCHHHHHHHHHHHHHHHHhc--CCCCCEEEEEECCCCcccccc--CHHHHHHHHHHcC-
Confidence            1111   135677777332 333433322111011111110  112458999999999875422  2233333333221 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                       .             +++.+||++|.|++++..++.
T Consensus       145 -~-------------~~~~~Sa~~g~gi~~l~~~l~  166 (206)
T 2bcg_Y          145 -M-------------PFLETSALDSTNVEDAFLTMA  166 (206)
T ss_dssp             -C-------------CEEECCTTTCTTHHHHHHHHH
T ss_pred             -C-------------eEEEEeCCCCCCHHHHHHHHH
Confidence             1             467899999999999988775

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.00  E-value=3.8e-10  Score=90.78  Aligned_cols=159  Identities=13%  Similarity=0.073  Sum_probs=75.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      .-|+++|.+|+|||||+++++..    +  .......+ ..... ..+...+.. ....++|+ +|.-  ...     .+
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~~----~--~~~~~~~t-~~~~~~~~~~~~~~~-~~~~i~Dt-~G~~--~~~-----~~   84 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTTN----G--YPTEYIPT-AFDNFSAVVSVDGRP-VRLQLCDT-AGQD--EFD-----KL   84 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC--------------CC-SSEEEEEEEEETTEE-EEEEEEEC-CCST--TCS-----SS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC----C--CCCCCCCc-ccceeEEEEEECCEE-EEEEEEEC-CCCH--HHH-----HH
Confidence            36789999999999999999942    2  11221222 11110 011111111 11246777 3320  011     01


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCC----------CcchHHH
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPER----------SGDSLDE  180 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~----------~~~~~~~  180 (263)
                      ...  .....|.+++-.+ +.++..+.... .....+.....   -++.++|+||+|+.+...          .....+.
T Consensus        85 ~~~--~~~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~  158 (201)
T 2q3h_A           85 RPL--CYTNTDIFLLCFS-VVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEA  158 (201)
T ss_dssp             GGG--GGTTCSEEEEEEE-TTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHH
T ss_pred             hHh--hcCCCcEEEEEEE-CCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhchhhhhhhcccccccCCHHH
Confidence            111  1246777777332 34444433221 11111211111   245899999999976310          0011222


Q ss_pred             HHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       181 ~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .....+..+              ...++.+||++|.|++++..++..
T Consensus       159 ~~~~~~~~~--------------~~~~~~~Sa~~g~gi~~l~~~l~~  191 (201)
T 2q3h_A          159 AKLLAEEIK--------------AASYIECSALTQKNLKEVFDAAIV  191 (201)
T ss_dssp             HHHHHHHHT--------------CSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHhcC--------------CcEEEEEecCCCCCHHHHHHHHHH
Confidence            222222221              124678999999999999988754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.00  E-value=6.9e-10  Score=87.34  Aligned_cols=156  Identities=13%  Similarity=0.051  Sum_probs=77.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc-hhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE-RAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d-~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      --++++|.+|+|||||+++++...    ..  ...+ + .+.. ...+...+.. .-..++|+ +|.      ..     
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~~----~~--~~~~-t-~~~~~~~~~~~~~~~-~~l~i~Dt-~G~------~~-----   66 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTGS----YQ--VLEK-T-ESEQYKKEMLVDGQT-HLVLIREE-AGA------PD-----   66 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHSC----CC--CCSS-C-SSSEEEEEEEETTEE-EEEEEEEC-SSS------CC-----
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC----CC--CcCC-C-cceeEEEEEEECCEE-EEEEEEEC-CCC------ch-----
Confidence            457899999999999999998532    11  0111 1 1111 0011111111 11245676 332      11     


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee-eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR-LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~-~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ....   ...|.+++-.+ +.++..+.........+..... ...-+|.++|.||+|+.+........++..+..+... 
T Consensus        67 ~~~~---~~~d~~ilv~D-~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~-  141 (178)
T 2iwr_A           67 AKFS---GWADAVIFVFS-LEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK-  141 (178)
T ss_dssp             HHHH---HHCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS-
T ss_pred             hHHH---HhCCEEEEEEE-CcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc-
Confidence            1122   24677777332 3445443322110011111100 0112568999999999532211112344444433331 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .             ..++.+||++|.|++++..++..
T Consensus       142 ~-------------~~~~~~Sa~~~~~i~~lf~~l~~  165 (178)
T 2iwr_A          142 R-------------CSYYETXATYGLNVDRVFQEVAQ  165 (178)
T ss_dssp             S-------------EEEEEEBTTTTBTHHHHHHHHHH
T ss_pred             C-------------CeEEEEeccccCCHHHHHHHHHH
Confidence            1             14678999999999999887753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.00  E-value=4.2e-11  Score=98.16  Aligned_cols=156  Identities=16%  Similarity=0.054  Sum_probs=77.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-|+++|.+|||||||+|+++..   ..........|.+.......+.  .... ...++|+ +|.      ..+.....
T Consensus        16 ~ki~v~G~~~~GKSsli~~~~~~---~~~~~~~~t~~~~~~~~~~~~~--~~~~-~~~i~Dt-~G~------~~~~~~~~   82 (221)
T 3gj0_A           16 FKLVLVGDGGTGKTTFVKRHLTG---EFEKKYVATLGVEVHPLVFHTN--RGPI-KFNVWDT-AGQ------EKFGGLRD   82 (221)
T ss_dssp             EEEEEEECTTSSHHHHHTTBHHH---HHTCEEETTTTEEEEEEEEEET--TEEE-EEEEEEE-CSG------GGTSCCCH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC---CCCCCCCCccceeEEEEEEEEC--CEEE-EEEEEeC-CCh------HHHhHHHH
Confidence            45789999999999999996532   1112233444432221111111  1111 1246777 442      11111111


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...   ...|.+++-.+ +.++..+.........+....   .-++.++|+||+|+.+....    .......+..+   
T Consensus        83 ~~~---~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~---  148 (221)
T 3gj0_A           83 GYY---IQAQCAIIMFD-VTSRVTYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVK----AKSIVFHRKKN---  148 (221)
T ss_dssp             HHH---TTCCEEEEEEE-TTCHHHHHTHHHHHHHHHHHS---TTCCEEEEEECTTSSSCSSC----GGGCCHHHHHT---
T ss_pred             HHH---hcCCEEEEEEE-CCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCcccccccc----HHHHHHHHHcC---
Confidence            121   35677777332 333333222111011111111   12458999999999765421    11111112111   


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  ..++.+||++|.|++++..++..
T Consensus       149 ------------~~~~~~Sa~~~~gi~~l~~~l~~  171 (221)
T 3gj0_A          149 ------------LQYYDISAKSNYNFEKPFLWLAR  171 (221)
T ss_dssp             ------------CEEEECBGGGTBTTTHHHHHHHH
T ss_pred             ------------CEEEEEeCCCCCCHHHHHHHHHH
Confidence                        14678999999999999988764

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.99  E-value=8.8e-11  Score=105.72  Aligned_cols=159  Identities=19%  Similarity=0.218  Sum_probs=80.2

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcce-EeecchhHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCI-CCTVKHSLVQA  110 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~-~~~~~~~~~~~  110 (263)
                      ..-++|+|.+|+|||||+|+|+    +.+.+.+....|+|.......+......  -..++|+ +|.. ...........
T Consensus        34 ~~kI~IvG~~~vGKSTLin~L~----~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~l~liDT-pG~~d~~~l~~~~~~~  106 (423)
T 3qq5_A           34 RRYIVVAGRRNVGKSSFMNALV----GQNVSIVSDYAGTTTDPVYKSMELHPIG--PVTLVDT-PGLDDVGELGRLRVEK  106 (423)
T ss_dssp             CEEEEEECSCSTTTTTTTTSSC----C-------------CCCCEEEEEETTTE--EEEEEEC-SSTTCCCTTCCCCHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH----cCCCCccCCCCCeeeeeEEEEEEECCCC--eEEEEEC-cCCCcccchhHHHHHH
Confidence            4578999999999999999999    5555666666776544333222222111  1246787 4432 11111111122


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      ....   ....|.+++-.+.  ...+.... + ...+... .    ++.++|+||+|+.+....     +.   .+.+..
T Consensus       107 ~~~~---l~~aD~vllVvD~--~~~~~~~~-~-l~~l~~~-~----~piIvV~NK~Dl~~~~~~-----~~---~~~l~~  166 (423)
T 3qq5_A          107 ARRV---FYRADCGILVTDS--APTPYEDD-V-VNLFKEM-E----IPFVVVVNKIDVLGEKAE-----EL---KGLYES  166 (423)
T ss_dssp             HHHH---HTSCSEEEEECSS--SCCHHHHH-H-HHHHHHT-T----CCEEEECCCCTTTTCCCT-----HH---HHHSSC
T ss_pred             HHHH---HhcCCEEEEEEeC--CChHHHHH-H-HHHHHhc-C----CCEEEEEeCcCCCCccHH-----HH---HHHHHH
Confidence            2222   2467888885543  12221111 1 1111111 2    448999999999877531     11   222211


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      ..          + .+++.+||++|.|++++.+++...
T Consensus       167 ~~----------g-~~v~~vSAktg~gI~eL~~~L~~~  193 (423)
T 3qq5_A          167 RY----------E-AKVLLVSALQKKGFDDIGKTISEI  193 (423)
T ss_dssp             CT----------T-CCCCCCSSCCTTSTTTHHHHHHHH
T ss_pred             Hc----------C-CCEEEEECCCCCCHHHHHHHHHHh
Confidence            10          1 157889999999999999888754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.98  E-value=1.6e-10  Score=91.22  Aligned_cols=159  Identities=13%  Similarity=0.005  Sum_probs=74.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      -++++|.+|+|||||+++++.....      .....+ ..... ..+...+... ...++|+ +|.  ..    +.....
T Consensus        10 ki~v~G~~~~GKssl~~~~~~~~~~------~~~~~t-~~~~~~~~~~~~~~~~-~~~i~Dt-~G~--~~----~~~~~~   74 (182)
T 3bwd_D           10 KCVTVGDGAVGKTCLLISYTSNTFP------TDYVPT-VFDNFSANVVVNGATV-NLGLWDT-AGQ--ED----YNRLRP   74 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-----------------CBCCCC--------CEEECC-CC---CT----TTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCC------CCCCCe-eeeeEEEEEEECCEEE-EEEEEEC-CCC--hh----hhhhHH
Confidence            5789999999999999999854211      111111 11000 0011111111 1246677 332  11    111111


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCC--------cchHHHHHH
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERS--------GDSLDELEK  183 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~--------~~~~~~~~~  183 (263)
                      ..   ....|.+++-.+ +.++..+.... .....+....   .-++.++|+||+|+.+....        ....++..+
T Consensus        75 ~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~  147 (182)
T 3bwd_D           75 LS---YRGADVFILAFS-LISKASYENVSKKWIPELKHYA---PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE  147 (182)
T ss_dssp             GG---GTTCSEEEEEEE-TTCHHHHHHHHHTHHHHHHHHC---TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH
T ss_pred             hh---ccCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH
Confidence            11   135788777333 33444332221 1111122111   12458999999999765310        001122222


Q ss_pred             HHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          184 EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       184 ~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      ..+..+              ...++.+||++|.|++++..++...
T Consensus       148 ~~~~~~--------------~~~~~~~Sa~~~~gi~~l~~~l~~~  178 (182)
T 3bwd_D          148 LKKLIG--------------APAYIECSSKSQENVKGVFDAAIRV  178 (182)
T ss_dssp             HHHHHT--------------CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHcC--------------CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            222221              1246789999999999999887653

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.98  E-value=2.2e-10  Score=94.06  Aligned_cols=159  Identities=14%  Similarity=0.082  Sum_probs=75.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-|+|+|.+|+|||||+++|+.......   .....|  .......+...+... -..++|+ +|.      ..+.....
T Consensus        14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~---~~~t~~--~~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~~   80 (223)
T 3cpj_B           14 FKIVLIGDSGVGKSNLLSRFTKNEFNMD---SKSTIG--VEFATRTLEIEGKRI-KAQIWDT-AGQ------ERYRAITS   80 (223)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHCCCCC---------C--CSEEEEEEEETTEEE-EEEEECC-TTT------TTTTCCCG
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCCCCCC---CCCccc--ceeEEEEEEECCEEE-EEEEEEC-CCc------cchhhhHH
Confidence            4688999999999999999985421100   001111  111111111111011 1246676 331      11100011


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..   ....|.+++-. .+.++..+.........+....  ..-++.++|+||+|+.+..+.  ..+...+..+..+  .
T Consensus        81 ~~---~~~~d~vilV~-D~~~~~s~~~~~~~l~~i~~~~--~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~  150 (223)
T 3cpj_B           81 AY---YRGAVGALIVY-DISKSSSYENCNHWLSELRENA--DDNVAVGLIGNKSDLAHLRAV--PTEESKTFAQENQ--L  150 (223)
T ss_dssp             GG---TTTCCEEEEEE-C-CCHHHHHHHHHHHHHHHHHC--C--CEEEEEECCGGGGGGCCS--CHHHHHHHHHHTT--C
T ss_pred             HH---hccCCEEEEEE-eCCCHHHHHHHHHHHHHHHHhC--CCCCeEEEEEECccccccccc--CHHHHHHHHHHcC--C
Confidence            11   13567777622 2344443322111011111111  112568999999999764322  2233443333321  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   .++.+||++|.|++++..++..
T Consensus       151 -------------~~~~~Sa~~~~gi~~l~~~l~~  172 (223)
T 3cpj_B          151 -------------LFTETSALNSENVDKAFEELIN  172 (223)
T ss_dssp             -------------EEEECCCC-CCCHHHHHHHHHH
T ss_pred             -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence                         4678999999999999988764

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.98  E-value=8e-10  Score=90.09  Aligned_cols=200  Identities=15%  Similarity=0.127  Sum_probs=82.0

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      ..+-++++|++|+|||||+++|+......  .+....++  ...+.   ..    . -..++|+ +|.      ..+...
T Consensus        11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~~~--~~~~~~~~--~~~~~---~~----~-~~~l~Dt-~G~------~~~~~~   71 (218)
T 1nrj_B           11 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP--TVVSQEPL--SAADY---DG----S-GVTLVDF-PGH------VKLRYK   71 (218)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC--BCCCSSCE--EETTG---GG----S-SCEEEEC-CCC------GGGTHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCC--eeeecCce--EEEEe---eC----c-eEEEEEC-CCc------HHHHHH
Confidence            44678999999999999999999642111  11111221  22221   10    0 1246787 442      122223


Q ss_pred             HHHHHHh-ccCCcEEEEcccCCCCchhHHHH-hhccccccccee-eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          111 LEQLVQR-KERLDHILLETTGLANPAPLASV-LWLDDQLESAVR-LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       111 l~~~~~~-~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~-~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      +...+.. ...+|.+++-.+...++..+... .++...+..... ...-+|.++|+||+|+.+........+.+.+.++.
T Consensus        72 ~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~  151 (218)
T 1nrj_B           72 LSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQK  151 (218)
T ss_dssp             HHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHH
Confidence            3333321 12356665533322122222111 011111110000 11125589999999998875322222233333332


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchh--hhhhhhhhhhccCCCCCCCCCCEEEEEEEcCCCCCHHHHHhhhc
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHV--TRLEGLLEEHQYKSSQNLHDNNVRTLSICEPLAVNLDKVILQIA  262 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~--~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~  262 (263)
                      +...           ....++.+||++|.+-  ..+...+.....+...+ ....+.++. ....|-..+.+..|+.
T Consensus       152 ~~~~-----------~~~~~~~~Sa~~~~~~~~~~~~~~l~~~~~f~~~~-~~~~v~~~~-~s~~~~~i~~~~~~~~  215 (218)
T 1nrj_B          152 VIER-----------RKKSLNEVERKINEEDYAENTLDVLQSTDGFKFAN-LEASVVAFE-GSINKRKISQWREWID  215 (218)
T ss_dssp             HHHH-----------HHHHHHC--------------CTTC----CCCGGG-SSSCEEEEE-CBTTTTBCHHHHHHHH
T ss_pred             HHHH-----------HhccccccccccccccchhhhcccccCCCCccccc-cCCceEEEe-ccccCCcHHHHHHHHH
Confidence            2110           1235788999988653  33333333222111111 112344433 3345556778888875

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.98  E-value=6.9e-10  Score=98.10  Aligned_cols=47  Identities=21%  Similarity=0.302  Sum_probs=34.5

Q ss_pred             CCceEEEecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+..|.+.+++..|+...+.++..+.+ +|+|.+|+|||||+|+|+..
T Consensus        14 ~~~~v~~~~l~~~~~~k~~~~~~~~~I-~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           14 TPGYVGFANLPNQVHRKSVKKGFEFTL-MVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             -------CCHHHHHHTHHHHHCCEECE-EECCCTTSCHHHHHHHHTTC
T ss_pred             CCceEEeccchHHhCCeeecCCCCEEE-EEEcCCCCCHHHHHHHHhCC
Confidence            346688999999999888777777665 79999999999999999743

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.97  E-value=1.8e-09  Score=85.86  Aligned_cols=157  Identities=14%  Similarity=0.118  Sum_probs=79.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-++++|.+|+|||||+|++...    +..  ...+  |.+.....+...  ... ..++|+ +|.-  ..+.    ...
T Consensus        23 ~~i~v~G~~~~GKssli~~l~~~----~~~--~~~~--t~~~~~~~~~~~--~~~-~~~~Dt-~G~~--~~~~----~~~   84 (189)
T 2x77_A           23 IRVLMLGLDNAGKTSILYRLHLG----DVV--TTVP--TVGVNLETLQYK--NIS-FEVWDL-GGQT--GVRP----YWR   84 (189)
T ss_dssp             EEEEEEEETTSSHHHHHHHTCCS----CCE--EECS--STTCCEEEEEET--TEE-EEEEEE-CCSS--SSCC----CCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC----CCC--CcCC--CCceEEEEEEEC--CEE-EEEEEC-CCCH--hHHH----HHH
Confidence            45889999999999999999742    221  1222  122221111111  111 246777 4421  1110    000


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      .   ....+|.+++-.+ +.++..+.... ++...+... .. .-+|.++|+||+|+.+...    .+++.+.+....-.
T Consensus        85 ~---~~~~~d~ii~v~d-~~~~~s~~~~~~~~~~~~~~~-~~-~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~  154 (189)
T 2x77_A           85 C---YFSDTDAVIYVVD-STDRDRMGVAKHELYALLDED-EL-RKSLLLIFANKQDLPDAAS----EAEIAEQLGVSSIM  154 (189)
T ss_dssp             S---SSTTCCEEEEEEE-TTCCTTHHHHHHHHHHHHTCS-TT-TTCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCC
T ss_pred             H---HhhcCCEEEEEEe-CCCHHHHHHHHHHHHHHHhhh-hc-CCCeEEEEEECCCCcCCCC----HHHHHHHhChhhcc
Confidence            0   0136777777333 33443322211 111111110 00 1145899999999987642    34444433211100


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                               .... +++.+||++|.|++++.+++..
T Consensus       155 ---------~~~~-~~~~~Sa~~~~gi~~l~~~l~~  180 (189)
T 2x77_A          155 ---------NRTW-TIVKSSSKTGDGLVEGMDWLVE  180 (189)
T ss_dssp             ---------SSCE-EEEECCTTTCTTHHHHHHHHHH
T ss_pred             ---------CCce-EEEEccCCCccCHHHHHHHHHH
Confidence                     0011 5788999999999999988764

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=98.96  E-value=1.1e-09  Score=89.96  Aligned_cols=154  Identities=17%  Similarity=0.231  Sum_probs=75.5

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhh--hhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAM--INEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~--~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      |+|+|-+|+|||||+++++...-.       .....|++.+...  +...+ ...-.++.|++ |-      +.+.....
T Consensus        16 ivlvGd~~VGKTsLi~r~~~~~f~-------~~~~~Tig~d~~~k~~~~~~-~~v~l~iwDta-Gq------e~~~~l~~   80 (216)
T 4dkx_A           16 LVFLGEQSVGKTSLITRFMYDSFD-------NTYQATIGIDFLSKTMYLED-RTIRLQLWDTA-GL------ERFRSLIP   80 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCC-----------------CEEEEEECSS-CEEEEEEECCS-CT------TTCGGGHH
T ss_pred             EEEECcCCcCHHHHHHHHHhCCCC-------CCcCCccceEEEEEEEEecc-eEEEEEEEECC-Cc------hhhhhHHH
Confidence            679999999999999999854210       0001112222111  11111 11112466763 21      11111122


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...   ...+.+++-. .+.++..+..+......+... . ..-++.+||.||+|+.+..+.  ..++..+..+..+  +
T Consensus        81 ~~~---~~a~~~ilv~-di~~~~Sf~~i~~~~~~i~~~-~-~~~~piilVgNK~Dl~~~r~V--~~~e~~~~a~~~~--~  150 (216)
T 4dkx_A           81 SYI---RDSAAAVVVY-DITNVNSFQQTTKWIDDVRTE-R-GSDVIIMLVGNKTDLADKRQV--SIEEGERKAKELN--V  150 (216)
T ss_dssp             HHH---TTCSEEEEEE-ETTCHHHHHTHHHHHHHHHHH-H-TTSSEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--C
T ss_pred             HHh---ccccEEEEEe-ecchhHHHHHHHHHHHHHHHh-c-CCCCeEEEEeeccchHhcCcc--cHHHHhhHHHHhC--C
Confidence            222   3566666622 244444433221101111111 0 112458899999999765432  2344444444442  2


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                   ..+.+||++|.|++++...|.
T Consensus       151 -------------~~~e~SAktg~nV~e~F~~i~  171 (216)
T 4dkx_A          151 -------------MFIETSAKAGYNVKQLFRRVA  171 (216)
T ss_dssp             -------------EEEEEBTTTTBSHHHHHHHHH
T ss_pred             -------------eeEEEeCCCCcCHHHHHHHHH
Confidence                         256789999999999887765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.95  E-value=2.2e-10  Score=99.02  Aligned_cols=124  Identities=16%  Similarity=0.193  Sum_probs=61.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH-H
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL-E  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l-~  112 (263)
                      -++++|.+|+|||||+|+++..    ......+.++.|++.+...+...+ .. -..++|+ +|.      ..+.+.. .
T Consensus         5 KI~lvG~~~vGKSSLi~~l~~~----~~~~~~~~~~~Ti~~~~~~~~~~~-~~-~l~i~Dt-~G~------~~~~~~~~~   71 (307)
T 3r7w_A            5 KLLLMGRSGSGKSSMRSIIFSN----YSAFDTRRLGATIDVEHSHLRFLG-NM-TLNLWDC-GGQ------DVFMENYFT   71 (307)
T ss_dssp             EEEEECCTTSSHHHHHHHHHSC----CCTGGGGGCCCCCSEEEEEEEETT-TE-EEEEEEE-CCS------HHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHhC----CCCccccCcCCccceEEEEEEeCC-ce-EEEEEEC-CCc------HHHhhhhhh
Confidence            4789999999999999999853    112223455665655544333211 11 1357787 442      2221110 1


Q ss_pred             HHHHh-ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCC
Q 024744          113 QLVQR-KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSP  171 (263)
Q Consensus       113 ~~~~~-~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~  171 (263)
                      ..... ...+|.+++-.+ +.++..+.........+........-+|.++|+||+|+.+.
T Consensus        72 ~~~~~~~~~ad~vi~V~D-~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~  130 (307)
T 3r7w_A           72 KQKDHIFQMVQVLIHVFD-VESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL  130 (307)
T ss_dssp             TTHHHHHTTCSEEEEEEE-TTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred             hHHHHHhccCCEEEEEEE-CCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch
Confidence            11110 146788777333 23333222211101111111111112568999999999874

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.95  E-value=3.9e-10  Score=101.26  Aligned_cols=160  Identities=19%  Similarity=0.190  Sum_probs=78.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhH-HHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSL-VQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~-~~~l  111 (263)
                      .++|+|++|||||||+|+|+..    +.. +.+.+.+|.......+.... ... ..+.++ +|.+... ....+ ...+
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~----~~~-i~~~~ftTl~p~~G~V~~~~-~~~-~~l~Dt-pGli~~a~~~~~L~~~fl  230 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRA----HPK-IAPYPFTTLSPNLGVVEVSE-EER-FTLADI-PGIIEGASEGKGLGLEFL  230 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSS----CCE-ECCCTTCSSCCEEEEEECSS-SCE-EEEEEC-CCCCCCGGGSCCSCHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHcC----Ccc-ccCcccceecceeeEEEecC-cce-EEEEec-cccccchhhhhhhhHHHH
Confidence            5899999999999999999844    222 23333333433322332211 011 124455 3322100 00001 1112


Q ss_pred             HHHHHhccCCcEEEEcccCCC-CchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          112 EQLVQRKERLDHILLETTGLA-NPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~-~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      .    .....+.++. ..++. ++......  ...++..+...-...|.++++||+|+....    .++.+.+.++..+ 
T Consensus       231 ~----~~era~~lL~-vvDls~~~~~~ls~--g~~el~~la~aL~~~P~ILVlNKlDl~~~~----~~~~l~~~l~~~g-  298 (416)
T 1udx_A          231 R----HIARTRVLLY-VLDAADEPLKTLET--LRKEVGAYDPALLRRPSLVALNKVDLLEEE----AVKALADALAREG-  298 (416)
T ss_dssp             H----HHTSSSEEEE-EEETTSCHHHHHHH--HHHHHHHHCHHHHHSCEEEEEECCTTSCHH----HHHHHHHHHHTTT-
T ss_pred             H----HHHHHHhhhE-EeCCccCCHHHHHH--HHHHHHHHhHHhhcCCEEEEEECCChhhHH----HHHHHHHHHHhcC-
Confidence            1    1235566554 33333 32221111  111111110000013488999999987641    3344444443211 


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                    ..++.+||.+++|+++|.+++..
T Consensus       299 --------------~~vi~iSA~~g~gi~eL~~~i~~  321 (416)
T 1udx_A          299 --------------LAVLPVSALTGAGLPALKEALHA  321 (416)
T ss_dssp             --------------SCEEECCTTTCTTHHHHHHHHHH
T ss_pred             --------------CeEEEEECCCccCHHHHHHHHHH
Confidence                          14788999999999999888764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.95  E-value=3.8e-10  Score=90.06  Aligned_cols=160  Identities=14%  Similarity=0.044  Sum_probs=78.4

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ..--|+++|.+|+|||||+++++...-.      .....+ ...+. ..+...... ....++|+ +|.  ...+.    
T Consensus        20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~~~-~~l~i~Dt-~G~--~~~~~----   84 (187)
T 3c5c_A           20 LEVNLAILGRRGAGKSALTVKFLTKRFI------SEYDPN-LEDTYSSEETVDHQP-VHLRVMDT-ADL--DTPRN----   84 (187)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCC------SCCCTT-CCEEEEEEEEETTEE-EEEEEEEC-CC-----CCC----
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHhCCCC------cccCCC-ccceeeEEEEECCEE-EEEEEEEC-CCC--Ccchh----
Confidence            3346889999999999999999853210      111111 11110 001111111 11246777 332  11111    


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhHHHHhhccccccccee-eCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhh
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVR-LDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEI  188 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~-~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~  188 (263)
                       +...+   ...|.+++-.+ +.++..+.........+..... ...-++.++|.||+|+.+..+.  ..++..+..+..
T Consensus        85 -~~~~~---~~~~~~ilv~d-~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~  157 (187)
T 3c5c_A           85 -CERYL---NWAHAFLVVYS-VDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQV--TKAEGVALAGRF  157 (187)
T ss_dssp             -THHHH---TTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS--CHHHHHHHHHHH
T ss_pred             -HHHHH---hhCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCcc--CHHHHHHHHHHc
Confidence             22232   24566666222 3344443322111111111100 0012458999999999764322  234444444443


Q ss_pred             cCCCeEEEeecCCCChhhhhcccc-CCcchhhhhhhhhhh
Q 024744          189 NSLAHVIRSVRCQVDLSEVLNCRA-YDATHVTRLEGLLEE  227 (263)
Q Consensus       189 ~p~~~i~~~~~~~~~~~~ii~isa-~~g~~~~~l~~~l~~  227 (263)
                      +  +             .++.+|| ++|.|++++...+..
T Consensus       158 ~--~-------------~~~e~Sa~~~g~gv~~lf~~l~~  182 (187)
T 3c5c_A          158 G--C-------------LFFEVSACLDFEHVQHVFHEAVR  182 (187)
T ss_dssp             T--C-------------EEEECCSSSCSHHHHHHHHHHHH
T ss_pred             C--C-------------cEEEEeecCccccHHHHHHHHHH
Confidence            2  1             4678999 899999999887654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.95  E-value=5.6e-10  Score=90.05  Aligned_cols=22  Identities=27%  Similarity=0.238  Sum_probs=20.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -++++|.+|+|||||+++++..
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5789999999999999999854

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=98.94  E-value=3.1e-09  Score=95.43  Aligned_cols=59  Identities=15%  Similarity=0.283  Sum_probs=37.5

Q ss_pred             eeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          158 TDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      +.++++||+|+.+..+.....+++++.++...            ....+++++||++|.|+++|.++|...
T Consensus       139 ~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~------------~~~~~~i~vSA~~g~gi~~L~~~l~~~  197 (410)
T 1kk1_A          139 NIIIAQNKIELVDKEKALENYRQIKEFIEGTV------------AENAPIIPISALHGANIDVLVKAIEDF  197 (410)
T ss_dssp             CEEEEEECGGGSCHHHHHHHHHHHHHHHTTST------------TTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             cEEEEEECccCCCHHHHHHHHHHHHHHHHhcC------------cCCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence            37889999999875311112233333332211            012357899999999999999988763

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.94  E-value=1.6e-09  Score=86.64  Aligned_cols=160  Identities=16%  Similarity=0.092  Sum_probs=78.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      .-++++|.+|+|||||+++++...-      ......+ ..... ..+...+.. ....++|+ +|.  ...+     .+
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~~~------~~~~~~t-~~~~~~~~~~~~~~~-~~~~i~D~-~G~--~~~~-----~~   82 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYANDAF------PEEYVPT-VFDHYAVSVTVGGKQ-YLLGLYDT-AGQ--EDYD-----RL   82 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSSC------CCSCCCS-SCCCEEEEEESSSCE-EEEEEECC-CCS--SSST-----TT
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCCC------CCCCCCc-ccceeEEEEEECCEE-EEEEEEEC-CCC--cchh-----HH
Confidence            4688999999999999999985421      0111111 11110 011111111 11245676 332  1111     01


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCC----------CcchHHH
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPER----------SGDSLDE  180 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~----------~~~~~~~  180 (263)
                      ...  .....|.+++-.+ +.++..+.... .....+....   .-++.++|+||+|+.+...          .....++
T Consensus        83 ~~~--~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~  156 (194)
T 2atx_A           83 RPL--SYPMTDVFLICFS-VVNPASFQNVKEEWVPELKEYA---PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQ  156 (194)
T ss_dssp             GGG--GCTTCSEEEEEEE-TTCHHHHHHHHHTHHHHHHHHS---TTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHH
T ss_pred             HHH--hcCCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhcccccchhhcccccCcccCHHH
Confidence            111  1246788777332 34444332221 1111121111   1245899999999986420          0001222


Q ss_pred             HHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          181 LEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       181 ~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      ..+..+..+              ...++.+||++|.|++++..++...
T Consensus       157 ~~~~~~~~~--------------~~~~~~~Sa~~g~gi~~l~~~l~~~  190 (194)
T 2atx_A          157 GQKLAKEIG--------------ACCYVECSALTQKGLKTVFDEAIIA  190 (194)
T ss_dssp             HHHHHHHHT--------------CSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHcC--------------CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence            222222221              1246789999999999999887643

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.93  E-value=5.1e-10  Score=89.86  Aligned_cols=22  Identities=41%  Similarity=0.445  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .-++++|.+|+|||||+|++++
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4588999999999999999984

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.93  E-value=2.9e-10  Score=90.44  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=19.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      -++|+|.+|||||||+++++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999999995

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.93  E-value=6.9e-10  Score=90.63  Aligned_cols=159  Identities=11%  Similarity=0.048  Sum_probs=78.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh-hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA-MINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~-~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      -|+|+|.+|+|||||+++++...-.      .....+ ...+.. .+...+.. ....++|++ |.      ..+.....
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~~~~------~~~~~t-~~~~~~~~~~~~~~~-~~l~i~Dt~-G~------~~~~~~~~   93 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKDCYP------ETYVPT-VFENYTACLETEEQR-VELSLWDTS-GS------PYYDNVRP   93 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC------SSCCCC-SEEEEEEEEEC--CE-EEEEEEEEC-CS------GGGTTTGG
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCC------CCcCCe-eeeeEEEEEEECCEE-EEEEEEECC-CC------HhHHHHHH
Confidence            5889999999999999999854210      110111 111110 01111111 112466773 31      11111111


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeCeEEeeEEEEecCCCCCCC----------CCcchHHHH
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITDVVILNKVDLVSPE----------RSGDSLDEL  181 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~----------~~~~~~~~~  181 (263)
                      ..   ....|.+++-.+ +.++..+... ......+....   .-++.++|.||+|+.+..          ......+..
T Consensus        94 ~~---~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~  166 (214)
T 3q3j_B           94 LC---YSDSDAVLLCFD-ISRPETVDSALKKWRTEILDYC---PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQG  166 (214)
T ss_dssp             GG---CTTCSEEEEEEE-TTCTHHHHHHHTHHHHHHHHHC---TTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHH
T ss_pred             HH---cCCCeEEEEEEE-CcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccchhhhhhhcccccCccCHHHH
Confidence            11   136788777333 4445444331 11111121111   124589999999997530          000122333


Q ss_pred             HHHHHhhcCCCeEEEeecCCCChhhhhccccCCcch-hhhhhhhhhhh
Q 024744          182 EKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH-VTRLEGLLEEH  228 (263)
Q Consensus       182 ~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~-~~~l~~~l~~~  228 (263)
                      .+..+..+              ....+.+||++|.| ++++..++...
T Consensus       167 ~~~~~~~~--------------~~~~~e~SA~~g~g~v~~lf~~l~~~  200 (214)
T 3q3j_B          167 CAIAKQLG--------------AEIYLEGSAFTSEKSIHSIFRTASML  200 (214)
T ss_dssp             HHHHHHHT--------------CSEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcC--------------CCEEEEeccCCCcccHHHHHHHHHHH
Confidence            33333332              22467899999998 99998887643

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.92  E-value=6e-09  Score=93.53  Aligned_cols=59  Identities=12%  Similarity=0.299  Sum_probs=35.2

Q ss_pred             eeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          158 TDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      +.++++||+|+.+.++.....+++++.++....            ...+++++||++|+|+++|.++|...
T Consensus       137 ~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~------------~~~~~i~vSA~~g~gi~~L~~~l~~~  195 (408)
T 1s0u_A          137 KIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIA------------ENAPIIPISAHHEANIDVLLKAIQDF  195 (408)
T ss_dssp             CEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTT------------TTCCEEEC------CHHHHHHHHHHH
T ss_pred             eEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCC------------CCCeEEEeeCCCCCCHHHHHHHHHHh
Confidence            378999999998765432344555555543211            12357899999999999999988763

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.92  E-value=1e-09  Score=88.94  Aligned_cols=23  Identities=22%  Similarity=0.199  Sum_probs=20.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .-|+++|.+|+|||||+|+++..
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHhcC
Confidence            36889999999999999999854

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.92  E-value=1.6e-09  Score=100.60  Aligned_cols=163  Identities=12%  Similarity=0.088  Sum_probs=73.4

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCC-CeEEEEecCCCcccccchhhhhcC--CCCcceeeeeeecCcceEeecchhH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHG-KRIAVILNEFGEEIGVERAMINEG--EGGALVEEWVELANGCICCTVKHSL  107 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~-~~~~ii~~~~g~t~~~d~~~~~~~--~~~~~~~~~~~l~~g~~~~~~~~~~  107 (263)
                      ...-|+++|.+|||||||+|++++..-. .....+..++.++.......+...  ..... ..++|+ +|.   .   .+
T Consensus        40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~-~~i~Dt-~G~---e---~~  111 (535)
T 3dpu_A           40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECL-FHFWDF-GGQ---E---IM  111 (535)
T ss_dssp             CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCE-EEEECC-CSC---C---TT
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEE-EEEEEC-CcH---H---HH
Confidence            3446889999999999999999953210 000001111110000000011111  11111 256787 441   1   11


Q ss_pred             HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      .......+   ...|.+++    +.|.............+....   ...+.++|+||+|+.+..+.  ..+.+++....
T Consensus       112 ~~~~~~~l---~~~d~ii~----V~D~s~~~~~~~~~~~l~~~~---~~~pvilV~NK~Dl~~~~~v--~~~~~~~~~~~  179 (535)
T 3dpu_A          112 HASHQFFM---TRSSVYML----LLDSRTDSNKHYWLRHIEKYG---GKSPVIVVMNKIDENPSYNI--EQKKINERFPA  179 (535)
T ss_dssp             TTTCHHHH---HSSEEEEE----EECGGGGGGHHHHHHHHHHHS---SSCCEEEEECCTTTCTTCCC--CHHHHHHHCGG
T ss_pred             HHHHHHHc---cCCcEEEE----EEeCCCchhHHHHHHHHHHhC---CCCCEEEEEECCCccccccc--CHHHHHHHHHh
Confidence            11111222   24677777    333332211111111222211   11458999999999875432  23334333322


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      .+               .+++.+||++|.|+++|...+...
T Consensus       180 ~~---------------~~~~~vSA~~g~gi~eL~~~l~~~  205 (535)
T 3dpu_A          180 IE---------------NRFHRISCKNGDGVESIAKSLKSA  205 (535)
T ss_dssp             GT---------------TCEEECCC-----CTTHHHHHHHH
T ss_pred             cC---------------CceEEEecCcccCHHHHHHHHHHH
Confidence            21               147889999999999999887653

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=98.91  E-value=3.2e-09  Score=83.63  Aligned_cols=95  Identities=18%  Similarity=0.193  Sum_probs=58.3

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccc------hhhhhcCCCCcceeeeeeecCcceEee
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVE------RAMINEGEGGALVEEWVELANGCICCT  102 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d------~~~~~~~~~~~~~~~~~~l~~g~~~~~  102 (263)
                      .+++++|+|++|||||||+++|+..  ..|.+++++.++++. .++|      .......  +.  ..++...++|.||.
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~~-~diD~~~g~D~~r~~~a--Ga--~~v~~~s~~~~~~~   77 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG-GEPARPEGVDSVRHERA--GA--VATAVEGDGLLQLH   77 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------------C--SEEEEEETTEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCCC-cccccCCChhHHHHHhc--CC--CeEEeccCCEEEEE
Confidence            3578999999999999999999875  458899999999874 3332      3222221  11  12344557887776


Q ss_pred             cc--hhHHHHHHHHHHhccCCcEEEEcccCC
Q 024744          103 VK--HSLVQALEQLVQRKERLDHILLETTGL  131 (263)
Q Consensus       103 ~~--~~~~~~l~~~~~~~~~~d~ilie~~G~  131 (263)
                      .+  +.-.+.+..++.+. .+|++|+|..|-
T Consensus        78 ~~~~~~~~~~~~~ll~~~-~~D~vlVEg~~~  107 (169)
T 1xjc_A           78 LRRPLWRLDDVLALYAPL-RLDLVLVEGYKQ  107 (169)
T ss_dssp             ECCSCCCHHHHHHHHGGG-CCSEEEEECCTT
T ss_pred             ecccccchHHHHHHHHhc-CCCEEEEeCCCC
Confidence            52  11123444555544 899999999985

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.91  E-value=5e-10  Score=88.50  Aligned_cols=24  Identities=21%  Similarity=0.127  Sum_probs=20.7

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..-++++|.+|+|||||+++++..
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            345789999999999999999854

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.91  E-value=7.3e-09  Score=85.96  Aligned_cols=28  Identities=39%  Similarity=0.299  Sum_probs=22.2

Q ss_pred             CCcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           28 DDVSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        28 ~~~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...+..-|+|+|.+|||||||+|+|++.
T Consensus        25 ~~~~~~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           25 PRNSQLRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHcCC
Confidence            3345567899999999999999999953

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.90  E-value=4.9e-11  Score=96.14  Aligned_cols=159  Identities=12%  Similarity=0.064  Sum_probs=69.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-|+|+|.+|+|||||+|+|+...    .. ....++.+.......+...+... ...++|+ +|.-  ...    ....
T Consensus        34 ~ki~vvG~~~~GKSsli~~l~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~i~Dt-~G~~--~~~----~~~~  100 (199)
T 3l0i_B           34 FKLLLIGDSGVGKSCLLLRFADDT----YT-ESYISTIGVDFKIRTIELDGKTI-KLQIWDT-AGQE--RFR----TITS  100 (199)
T ss_dssp             EEEEEECCTTSCCTTTTTSSBCCC----CC-CHHHHHHCCSEEEEEEEETTEEE-EEEEECC-TTCT--TCC----CCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC----CC-CCcCCcccceEEEEEEEECCEEE-EEEEEEC-CCcH--hHH----HHHH
Confidence            367899999999999999998431    10 00011100111111111111001 1245666 3310  000    0000


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..   ....|.+++-. .+.++..+.........+.....  .-++.++|+||+|+.+.....  .+...+..+..+   
T Consensus       101 ~~---~~~~d~~i~v~-d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ilv~nK~Dl~~~~~v~--~~~~~~~~~~~~---  169 (199)
T 3l0i_B          101 SY---YRGAHGIIVVY-DVTDQESFNNVKQWLQEIDRYAS--ENVNKLLVGNKCDLTTKKVVD--YTTAKEFADSLG---  169 (199)
T ss_dssp             C-----CCCSEEEECC--CCCSHHHHHHHHHHHHHHSCC---CCSEEEEC-CCSSCC--CCCC--SCC-CHHHHTTT---
T ss_pred             HH---hhcCCEEEEEE-ECCCHHHHHHHHHHHHHHHHhcc--CCCCEEEEEECccCCccccCC--HHHHHHHHHHcC---
Confidence            11   13678877722 23444433222111111111111  124588999999997653211  011112222111   


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  .+++.+||++|.|++++..++..
T Consensus       170 ------------~~~~~vSA~~g~gv~~l~~~l~~  192 (199)
T 3l0i_B          170 ------------IPFLETSAKNATNVEQSFMTMAA  192 (199)
T ss_dssp             ------------CCBCCCCC---HHHHHHHHHHTT
T ss_pred             ------------CeEEEEECCCCCCHHHHHHHHHH
Confidence                        14788999999999999988764

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.89  E-value=1.1e-09  Score=104.63  Aligned_cols=55  Identities=13%  Similarity=0.177  Sum_probs=37.5

Q ss_pred             eeEEEEecCCCCCCCCCcchHHHHHHHHH-hhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          158 TDVVILNKVDLVSPERSGDSLDELEKEIH-EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~-~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +.++|+||+|+++....   ..   ..++ ...+         -..++.+++++||.+|.|+++|.+.+..
T Consensus       219 pvIlVlNKiDlv~~~~~---~~---~il~~~~~~---------l~lg~~~VV~iSA~~G~GvdeL~eaI~~  274 (772)
T 3zvr_A          219 RTIGVITKLDLMDEGTD---AR---DVLENKLLP---------LRRGYIGVVNRSQKDIDGKKDITAALAA  274 (772)
T ss_dssp             SEEEEEECTTSSCTTCC---SH---HHHTTCSSC---------CSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred             CEEEEEeCcccCCcchh---hH---HHHHHHhhh---------hhccCCceEEecccccccchhHHHHHHH
Confidence            48999999999976531   11   1111 1111         1125667899999999999999988875

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.87  E-value=3.7e-10  Score=106.23  Aligned_cols=22  Identities=41%  Similarity=0.561  Sum_probs=19.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -|+++|.+|+|||||+|+|+..
T Consensus       169 kV~ivG~~n~GKSTLin~Ll~~  190 (611)
T 3izq_1          169 SFVVLGHVDAGKSTLMGRLLYD  190 (611)
T ss_dssp             EEEEECCSSSCHHHHHHHHHSC
T ss_pred             EEEEEECCCCCHHHHHHHHHHh
Confidence            6789999999999999999843

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.86  E-value=7.2e-09  Score=82.55  Aligned_cols=125  Identities=17%  Similarity=0.220  Sum_probs=58.4

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      ..+.++++|.+|||||||+|+|+.....  ..+....++.+.  +.     .  ... ..++|+ +|.  ......+...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~--~~~~~~~~~~~~--~~-----~--~~~-~~l~Dt-~G~--~~~~~~~~~~  111 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSVR--PTVVSQEPLSAA--DY-----D--GSG-VTLVDF-PGH--VKLRYKLSDY  111 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSCC----------------CC-----C--CTT-CSEEEE-TTC--CBSSCCHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCC--cccccCCCceee--ee-----c--CCe-EEEEEC-CCC--chHHHHHHHH
Confidence            3457899999999999999999964211  122223333211  11     0  111 246787 443  2222333333


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHh-hccccccccee-eCeEEeeEEEEecCCCCCCCC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVR-LDSIITDVVILNKVDLVSPER  173 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~-~~~~i~~iivlNK~Dl~~~~~  173 (263)
                      +...+   ..+|.+++-.+...++..+.... ++...+..... ...-+|.++|+||+|+.+...
T Consensus       112 ~~~~~---~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          112 LKTRA---KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             HHHHG---GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             HHhhc---ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence            33322   34677777443332443332211 11111110000 011255899999999988764

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.85  E-value=6.3e-08  Score=90.60  Aligned_cols=180  Identities=16%  Similarity=0.225  Sum_probs=86.8

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccC---CCCeE--EEEec-----CCCcccccchhhhhcCC-CC-cceeeeeeecCcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGK---HGKRI--AVILN-----EFGEEIGVERAMINEGE-GG-ALVEEWVELANGC   98 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~---~~~~~--~ii~~-----~~g~t~~~d~~~~~~~~-~~-~~~~~~~~l~~g~   98 (263)
                      .++-++|+|..|+|||||+++|+...   .....  .+...     +.|-|+......+.... ++ .....++|+ +|-
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDT-PGh   83 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDT-PGH   83 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECC-CCS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEEC-CCc
Confidence            46788999999999999999997531   00000  00000     01111110000111100 11 112357777 442


Q ss_pred             eEeecchhHHHHHHHHHHhccCCcEEEEcccCCC--CchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcc
Q 024744           99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGLA--NPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGD  176 (263)
Q Consensus        99 ~~~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~--~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~  176 (263)
                            .++.....+.+.   ..|.+++-.+...  .+.......   .....  .    ++.++++||+|+.+..    
T Consensus        84 ------~dF~~ev~r~l~---~aD~aILVVDa~~gv~~qt~~~~~---~a~~~--~----ipiIvviNKiDl~~a~----  141 (600)
T 2ywe_A           84 ------VDFSYEVSRALA---ACEGALLLIDASQGIEAQTVANFW---KAVEQ--D----LVIIPVINKIDLPSAD----  141 (600)
T ss_dssp             ------GGGHHHHHHHHH---TCSEEEEEEETTTBCCHHHHHHHH---HHHHT--T----CEEEEEEECTTSTTCC----
T ss_pred             ------HhHHHHHHHHHH---hCCEEEEEEECCCCccHHHHHHHH---HHHHC--C----CCEEEEEeccCccccC----
Confidence                  344444444442   4566666333221  121111111   00111  1    4589999999998753    


Q ss_pred             hHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEE
Q 024744          177 SLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSI  246 (263)
Q Consensus       177 ~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~  246 (263)
                       .+++.+.++....           ++..+++.+||++|.|+++|.+++...-..+. ...+.+.+.+++
T Consensus       142 -~~~v~~el~~~lg-----------~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~-~~~~~pl~~lV~  198 (600)
T 2ywe_A          142 -VDRVKKQIEEVLG-----------LDPEEAILASAKEGIGIEEILEAIVNRIPPPK-GDPQKPLKALIF  198 (600)
T ss_dssp             -HHHHHHHHHHTSC-----------CCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC-CCTTSCCEEEEE
T ss_pred             -HHHHHHHHHHhhC-----------CCcccEEEEEeecCCCchHHHHHHHHhccccc-ccccCCcceeEE
Confidence             3444445544321           12346899999999999999998875443221 223445554443

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.85  E-value=1.4e-09  Score=88.23  Aligned_cols=161  Identities=15%  Similarity=0.049  Sum_probs=79.1

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch-hhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER-AMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~-~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      ..-++++|.+|+|||||+++++....      ......+ ..... ..+...+.. ....++|+ +|.  ...+     .
T Consensus         9 ~~ki~i~G~~~~GKTsli~~l~~~~~------~~~~~~t-~~~~~~~~~~~~~~~-~~~~i~Dt-~G~--~~~~-----~   72 (212)
T 2j0v_A            9 FIKCVTVGDGAVGKTCMLICYTSNKF------PTDYIPT-VFDNFSANVAVDGQI-VNLGLWDT-AGQ--EDYS-----R   72 (212)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCC------CSSCCCS-SCCCEEEEEECSSCE-EEEEEECC-CCC--CCCC-----C
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCC------CccCCCc-cceeEEEEEEECCEE-EEEEEEEC-CCc--HHHH-----H
Confidence            34688999999999999999985321      0111111 11110 001111111 11246776 332  1111     0


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCC------cchHHHHHH
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERS------GDSLDELEK  183 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~------~~~~~~~~~  183 (263)
                      +...  .....|.+++-.+ +.++..+.... .....+....  + -+|.++|+||+|+.+....      ....+...+
T Consensus        73 ~~~~--~~~~~d~~ilv~d-~~~~~s~~~~~~~~~~~~~~~~--~-~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~  146 (212)
T 2j0v_A           73 LRPL--SYRGADIFVLAFS-LISKASYENVLKKWMPELRRFA--P-NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEE  146 (212)
T ss_dssp             --CG--GGTTCSEEEEEEE-TTCHHHHHHHHHTHHHHHHHHC--T-TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHH
T ss_pred             HHHh--hccCCCEEEEEEE-CCCHHHHHHHHHHHHHHHHHhC--C-CCCEEEEEeCHHhhhCccccccccCCCCHHHHHH
Confidence            1111  1246788777332 44454433221 1111121111  1 2458999999999764210      001233333


Q ss_pred             HHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          184 EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       184 ~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      ..+.++              ...++.+||++|.|++++..++...
T Consensus       147 ~~~~~~--------------~~~~~~~Sa~~g~gi~~l~~~l~~~  177 (212)
T 2j0v_A          147 LRKQIG--------------AAAYIECSSKTQQNVKAVFDTAIKV  177 (212)
T ss_dssp             HHHHHT--------------CSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHcC--------------CceEEEccCCCCCCHHHHHHHHHHH
Confidence            333322              1246889999999999999887643

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=98.85  E-value=8.5e-10  Score=101.20  Aligned_cols=22  Identities=41%  Similarity=0.561  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -++++|.+|+|||||+++|+..
T Consensus        35 ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           35 SFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             EEEEESCGGGTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5789999999999999999753

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=98.85  E-value=3.2e-09  Score=94.09  Aligned_cols=153  Identities=13%  Similarity=0.112  Sum_probs=78.3

Q ss_pred             CCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhH
Q 024744           28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (263)
Q Consensus        28 ~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~  107 (263)
                      ....++.++++|.+|+|||||+++|++.             |.|++.....+...  ... ..++|+ +|-      .++
T Consensus        17 ~~~~m~~i~iiG~~d~GKSTL~~~L~~~-------------giTi~~~~~~~~~~--~~~-i~iiDt-PGh------~~f   73 (370)
T 2elf_A           17 RGSHMANVAIIGTEKSGRTSLAANLGKK-------------GTSSDITMYNNDKE--GRN-MVFVDA-HSY------PKT   73 (370)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHTTSEE-------------EEESSSEEEEECSS--SSE-EEEEEC-TTT------TTC
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHhC-------------CEEEEeeEEEEecC--CeE-EEEEEC-CCh------HHH
Confidence            3333448999999999999999999821             11121111111111  111 357888 442      233


Q ss_pred             HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEee-EEEEe-cCCCCCCCCCcchHHHHHHHH
Q 024744          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITD-VVILN-KVDLVSPERSGDSLDELEKEI  185 (263)
Q Consensus       108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~-iivlN-K~Dl~~~~~~~~~~~~~~~~l  185 (263)
                      ...+...+   ..+|.+++-.+ ...+.+......  . +.....    ++. ++++| |+|+ +++    ..+...+.+
T Consensus        74 ~~~~~~~~---~~aD~ailVvd-~~g~~~qt~e~~--~-~~~~~~----i~~~ivvvNNK~Dl-~~~----~~~~~~~~i  137 (370)
T 2elf_A           74 LKSLITAL---NISDIAVLCIP-PQGLDAHTGECI--I-ALDLLG----FKHGIIALTRSDST-HMH----AIDELKAKL  137 (370)
T ss_dssp             HHHHHHHH---HTCSEEEEEEC-TTCCCHHHHHHH--H-HHHHTT----CCEEEEEECCGGGS-CHH----HHHHHHHHH
T ss_pred             HHHHHHHH---HHCCEEEEEEc-CCCCcHHHHHHH--H-HHHHcC----CCeEEEEEEeccCC-CHH----HHHHHHHHH
Confidence            33333332   46777777444 211211111000  0 001111    224 88999 9999 542    233333444


Q ss_pred             HhhcCCCeEEEeecCCCChhhhhc--cccCC---cchhhhhhhhhhh
Q 024744          186 HEINSLAHVIRSVRCQVDLSEVLN--CRAYD---ATHVTRLEGLLEE  227 (263)
Q Consensus       186 ~~~~p~~~i~~~~~~~~~~~~ii~--isa~~---g~~~~~l~~~l~~  227 (263)
                      +++....        .....++++  +||++   |+|+++|.+.+.+
T Consensus       138 ~~~l~~~--------~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~  176 (370)
T 2elf_A          138 KVITSGT--------VLQDWECISLNTNKSAKNPFEGVDELKARINE  176 (370)
T ss_dssp             HHHTTTS--------TTTTCEEEECCCCTTSSSTTTTHHHHHHHHHH
T ss_pred             HHHHHhc--------CCCceEEEecccccccCcCCCCHHHHHHHHHh
Confidence            4432211        012236788  99999   9999988877653

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.84  E-value=7.5e-10  Score=98.00  Aligned_cols=126  Identities=17%  Similarity=0.221  Sum_probs=69.0

Q ss_pred             CCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhH
Q 024744           28 DDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSL  107 (263)
Q Consensus        28 ~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~  107 (263)
                      ...+..-|+|+|+||||||||+|+|+    +.+ +.+.+.+++|+....+.+...+  ..+ .++|+ +|.+-....  .
T Consensus        68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt----~~~-~~v~~~pftT~~~~~g~~~~~~--~~i-~l~D~-pGl~~~a~~--~  136 (376)
T 4a9a_A           68 ARTGVASVGFVGFPSVGKSTLLSKLT----GTE-SEAAEYEFTTLVTVPGVIRYKG--AKI-QMLDL-PGIIDGAKD--G  136 (376)
T ss_dssp             CBCSSEEEEEECCCCHHHHHHHHHHH----SBC-CCGGGTCSSCCCEEEEEEEETT--EEE-EEEEC-GGGCCC------
T ss_pred             eecCCCeEEEECCCCCCHHHHHHHHh----CCC-CcccCCCCceeeeeeEEEEeCC--cEE-EEEeC-CCccCCchh--h
Confidence            34455689999999999999999999    444 3346667777776666665532  222 57888 555422111  1


Q ss_pred             HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhccccccc-ceeeCeEEeeEEEEecCCC
Q 024744          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLES-AVRLDSIITDVVILNKVDL  168 (263)
Q Consensus       108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~-~~~~~~~i~~iivlNK~Dl  168 (263)
                      .....+.+.....+|+|++-.. ..+|....+.+  ...+.. ...+.. .+.++++||+|.
T Consensus       137 ~~~g~~~l~~i~~ad~il~vvD-~~~p~~~~~~i--~~EL~~~~~~l~~-k~~~i~~nK~d~  194 (376)
T 4a9a_A          137 RGRGKQVIAVARTCNLLFIILD-VNKPLHHKQII--EKELEGVGIRLNK-TPPDILIKKKEK  194 (376)
T ss_dssp             -CHHHHHHHHHHHCSEEEEEEE-TTSHHHHHHHH--HHHHHHTTEEETC-CCCCEEEEECSS
T ss_pred             hHHHHHHHHHHHhcCccccccc-cCccHHHHHHH--HHHHHHhhHhhcc-CChhhhhhHhhh
Confidence            1111222222245788777433 34554433221  111111 111111 346788999986

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.83  E-value=5.4e-10  Score=99.91  Aligned_cols=36  Identities=22%  Similarity=0.045  Sum_probs=19.6

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE   75 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d   75 (263)
                      ++|+|.||+|||||+|+|+    +.+ +.+.+.+++|+...
T Consensus         3 I~ivG~pnvGKSTL~n~L~----~~~-~~~~~~p~tT~~~~   38 (397)
T 1wxq_A            3 IGVVGKPNVGKSTFFSAAT----LVD-VEIANYPFTTIEAN   38 (397)
T ss_dssp             EEEEECTTSSHHHHHHHHH----C---------------CC
T ss_pred             EEEECCCCCCHHHHHHHHH----CCC-CcccCCCCcccCCc
Confidence            7899999999999999999    444 45566666655433

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.82  E-value=1.7e-09  Score=91.52  Aligned_cols=49  Identities=27%  Similarity=0.290  Sum_probs=44.0

Q ss_pred             CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+.+++++++++++|++.+++++.++.     +++|+|++|||||||++.|++.
T Consensus         7 ~~~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C            7 TPVALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             CCCCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CCcceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            345789999999999999999988776     7999999999999999999864

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.81  E-value=3.7e-09  Score=93.31  Aligned_cols=42  Identities=17%  Similarity=0.242  Sum_probs=31.8

Q ss_pred             EecceeEeCCc---ccCCC--cceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           14 IDETTHEFSNS---HENDD--VSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        14 ~~~~~~~~~~~---~~~~~--~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.++.+.||..   .++++  ..+|.|+|+|.+|||||||+|+|++.
T Consensus        11 l~~~~~~~~~~~~~~~l~~i~~~lp~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           11 IQRACTALGDHGDSSALPTLWDSLPAIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             TTTTTTSCSSCCSSCCC----CCCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred             HHHHHHhhCccccccccccccccCCEEEEECCCCCcHHHHHHHHhCC
Confidence            45567777652   34544  48889999999999999999999963

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.81  E-value=4.5e-09  Score=83.37  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -++++|.+|+|||||+|+++..
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=98.80  E-value=4.5e-09  Score=85.25  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=20.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -|+++|.+|+|||||+|+++..
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999864

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.77  E-value=2e-09  Score=91.53  Aligned_cols=47  Identities=28%  Similarity=0.402  Sum_probs=41.2

Q ss_pred             CceEEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++++++||+++|++ ..+++++++.     +++|+|++|||||||++.|.+.
T Consensus         5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A            5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcC
Confidence            468999999999976 4588887766     7999999999999999999864

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.77  E-value=6.6e-09  Score=83.57  Aligned_cols=54  Identities=20%  Similarity=0.130  Sum_probs=34.8

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .+.++++||+|+.+....  ..+..++....  |..             .++.+||+++.|++++.+++..
T Consensus       111 ~~i~~v~nK~Dl~~~~~~--~~~~a~~l~~~--~~~-------------~~~d~Sal~~~~i~~l~~~l~~  164 (199)
T 2f9l_A          111 IVIMLVGNKSDLRHLRAV--PTDEARAFAEK--NNL-------------SFIETSALDSTNVEEAFKNILT  164 (199)
T ss_dssp             CEEEEEEECTTCGGGCCS--CHHHHHHHHHH--TTC-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             CeEEEEEECcccccccCc--CHHHHHHHHHH--cCC-------------eEEEEeCCCCCCHHHHHHHHHH
Confidence            347889999999754321  22333333322  332             2566899999999999887753

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.77  E-value=6.3e-08  Score=90.70  Aligned_cols=181  Identities=19%  Similarity=0.260  Sum_probs=85.4

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCC---CCeE--EEEec-----CCCcccccchhhhhcCC-CC-cceeeeeeecCcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKH---GKRI--AVILN-----EFGEEIGVERAMINEGE-GG-ALVEEWVELANGC   98 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~---~~~~--~ii~~-----~~g~t~~~d~~~~~~~~-~~-~~~~~~~~l~~g~   98 (263)
                      .+.-++|+|..|+|||||+++|+....   ....  .+...     +.|.|+......+.... ++ .....++|+ +|-
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDT-PGh   81 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDT-PGH   81 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEEC-CCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEEC-CCc
Confidence            356789999999999999999985310   0000  00000     01111110000111100 01 112357787 442


Q ss_pred             eEeecchhHHHHHHHHHHhccCCcEEEEcccCC--CCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcc
Q 024744           99 ICCTVKHSLVQALEQLVQRKERLDHILLETTGL--ANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGD  176 (263)
Q Consensus        99 ~~~~~~~~~~~~l~~~~~~~~~~d~ilie~~G~--~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~  176 (263)
                            .++.....+.+.   ..|.+++-.+..  ..+.......   .....  .    ++.++++||+|+.+..    
T Consensus        82 ------~dF~~ev~~~l~---~aD~aILVVDa~~gv~~qt~~~~~---~~~~~--~----ipiIvViNKiDl~~a~----  139 (599)
T 3cb4_D           82 ------VDFSYEVSRSLA---ACEGALLVVDAGQGVEAQTLANCY---TAMEM--D----LEVVPVLNKIDLPAAD----  139 (599)
T ss_dssp             ------GGGHHHHHHHHH---HCSEEEEEEETTTCCCTHHHHHHH---HHHHT--T----CEEEEEEECTTSTTCC----
T ss_pred             ------hHHHHHHHHHHH---HCCEEEEEEECCCCCCHHHHHHHH---HHHHC--C----CCEEEeeeccCccccc----
Confidence                  344445544443   356666533321  1122221111   01111  1    4589999999998753    


Q ss_pred             hHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhccCCCCCCCCCCEEEEEEE
Q 024744          177 SLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQYKSSQNLHDNNVRTLSIC  247 (263)
Q Consensus       177 ~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~  247 (263)
                       .+++.+.++.....           +..+++.+||++|.|+++|.+++......+. ...+.+.+.+++.
T Consensus       140 -~~~v~~ei~~~lg~-----------~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~-~~~~~p~~alI~d  197 (599)
T 3cb4_D          140 -PERVAEEIEDIVGI-----------DATDAVRCSAKTGVGVQDVLERLVRDIPPPE-GDPEGPLQALIID  197 (599)
T ss_dssp             -HHHHHHHHHHHTCC-----------CCTTCEEECTTTCTTHHHHHHHHHHHSCCCC-CCTTSCCEEEEEE
T ss_pred             -HHHHHHHHHHHhCC-----------CcceEEEeecccCCCchhHHHHHhhcCCCcc-ccccCCceeeeee
Confidence             23444444443211           2235789999999999999998876443222 2334455555543

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.77  E-value=2.1e-09  Score=86.36  Aligned_cols=22  Identities=18%  Similarity=0.412  Sum_probs=19.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .-++++|.+|||||||++++.+
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3688999999999999999885

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.76  E-value=5e-09  Score=98.28  Aligned_cols=24  Identities=38%  Similarity=0.516  Sum_probs=21.0

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ...-|+++|.+|+|||||+++|+.
T Consensus       176 ~~~~I~iiG~~d~GKSTLi~~Ll~  199 (592)
T 3mca_A          176 PVVHLVVTGHVDSGKSTMLGRIMF  199 (592)
T ss_dssp             CEEEEEEECCSSSTHHHHHHHHHH
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHH
Confidence            445789999999999999999964

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.76  E-value=3.7e-09  Score=96.30  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=20.5

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..-++++|.+|+|||||+++|+.
T Consensus         7 ~~~i~iiG~~~~GKSTLi~~Ll~   29 (458)
T 1f60_A            7 HINVVVIGHVDSGKSTTTGHLIY   29 (458)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHH
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHH
Confidence            34688999999999999999985

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.76  E-value=7.5e-10  Score=102.33  Aligned_cols=162  Identities=13%  Similarity=0.176  Sum_probs=79.6

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      +.|.|+++|.+|+|||||+++|...    ++.. ...+|.|.++....+.... +.. ..++|+ +|-      ..+...
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~----~~~~-~~~~giT~~i~~~~v~~~~-g~~-i~~iDT-PGh------e~f~~~   68 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKT----QVAA-MEAGGITQHIGAFLVSLPS-GEK-ITFLDT-PGH------AAFSAM   68 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHH----HHHH-SSSCCBCCCTTSCCBCSSC-SSC-CBCEEC-SSS------CCTTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC----Cccc-ccCCceeEEEeEEEEEeCC-CCE-EEEEEC-CCh------HHHHHH
Confidence            3578899999999999999999842    1110 1122333333222222211 111 246787 442      111111


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhH-HHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPL-ASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~-~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      ....   ...+|.+++-.+......+. .+.+   ..+.. ..    +|.++++||+|+.+...     +.+...+....
T Consensus        69 ~~~~---~~~aD~vILVVDa~dg~~~qt~e~l---~~~~~-~~----vPiIVViNKiDl~~~~~-----~~v~~~l~~~~  132 (537)
T 3izy_P           69 RARG---TQVTDIVILVVAADDGVMKQTVESI---QHAKD-AH----VPIVLAINKCDKAEADP-----EKVKKELLAYD  132 (537)
T ss_dssp             BBSS---SBSBSSCEEECBSSSCCCHHHHHHH---HHHHT-TT----CCEEECCBSGGGTTTSC-----CSSSSHHHHTT
T ss_pred             HHHH---HccCCEEEEEEECCCCccHHHHHHH---HHHHH-cC----CcEEEEEecccccccch-----HHHHHHHHhhh
Confidence            1111   13567766633322111111 1111   01111 11    34899999999976431     11122222221


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      ..+.    .++  ...+++++||++|.|+++|.+++...
T Consensus       133 ~~~e----~~~--~~~~iv~vSAktG~GI~eLle~I~~l  165 (537)
T 3izy_P          133 VVCE----DYG--GDVQAVHVSALTGENMMALAEATIAL  165 (537)
T ss_dssp             SCCC----CSS--SSEEECCCCSSSSCSSHHHHHHHHHH
T ss_pred             hhHH----hcC--CCceEEEEECCCCCCchhHHHHHHHh
Confidence            1110    011  12367899999999999999887643

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.75  E-value=2.8e-08  Score=92.37  Aligned_cols=26  Identities=19%  Similarity=0.506  Sum_probs=23.1

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...+.|+|+|++|||||||+|+|++.
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~   88 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQ   88 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            35689999999999999999999953

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=98.75  E-value=3.1e-09  Score=96.17  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=21.5

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...-++++|.+|+|||||+++|+..
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~   47 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHD   47 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhh
Confidence            3456889999999999999999854

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.74  E-value=3.2e-09  Score=88.51  Aligned_cols=47  Identities=17%  Similarity=0.294  Sum_probs=42.3

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++++|++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A            4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4589999999999998889887765     7999999999999999999864

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=98.74  E-value=1.1e-08  Score=94.62  Aligned_cols=23  Identities=30%  Similarity=0.303  Sum_probs=21.3

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~   53 (263)
                      +.+.++|+|.+|||||||+|+|+
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll   34 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLL   34 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHH
Confidence            46789999999999999999997

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.74  E-value=3e-09  Score=87.74  Aligned_cols=46  Identities=22%  Similarity=0.202  Sum_probs=41.6

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++|++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A            3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred             cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            479999999999998899888776     7999999999999999999864

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.74  E-value=2.7e-09  Score=90.14  Aligned_cols=47  Identities=23%  Similarity=0.245  Sum_probs=42.0

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++++||+.+++++.++.     +++|+|++|||||||++.|++.
T Consensus         4 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A            4 ENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3579999999999998899988776     7999999999999999999864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.73  E-value=3.1e-09  Score=89.55  Aligned_cols=47  Identities=36%  Similarity=0.417  Sum_probs=42.3

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++++++++|++.+++++.++.     +++|+|++|||||||++.|++.
T Consensus         5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A            5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4589999999999998899887665     8999999999999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.73  E-value=3.1e-08  Score=83.83  Aligned_cols=130  Identities=17%  Similarity=0.196  Sum_probs=62.4

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEe-ecchhHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC-TVKHSLVQ  109 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~-~~~~~~~~  109 (263)
                      ....++++|.+|+|||||+|+|+    +.++..+.+..++|.......+..  .+.. ..++|+ +|.... ........
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~----~~~~~~~~~~~~~t~~~~~~~~~~--~~~~-l~iiDT-pG~~~~~~~~~~~~~  109 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSII----GERVVSISPFQSEGPRPVMVSRSR--AGFT-LNIIDT-PGLIEGGYINDMALN  109 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHH----TSCCSCCCSSSCCCSSCEEEEEEE--TTEE-EEEEEC-CCSEETTEECHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHh----CCCcccccCCCCcceeeEEEEEee--CCeE-EEEEEC-CCCCCCccchHHHHH
Confidence            35578999999999999999999    433333344444432211111111  1111 257888 554221 12223333


Q ss_pred             HHHHHHHhccCCcEEEEc--ccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCC
Q 024744          110 ALEQLVQRKERLDHILLE--TTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPE  172 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie--~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~  172 (263)
                      .+.+.+. ...+|.+++-  .++- ...... ..+ ...+...+......+.++|+||+|+.+++
T Consensus       110 ~i~~~~~-~~~~d~il~v~~~d~~-~~~~~~-~~~-~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          110 IIKSFLL-DKTIDVLLYVDRLDAY-RVDNLD-KLV-AKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             HHHHHTT-TCEECEEEEEEESSCC-CCCHHH-HHH-HHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HHHHHhh-cCCCCEEEEEEeCCCC-cCCHHH-HHH-HHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            4433321 2357777774  2221 111111 000 01111111110012489999999998654

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.72  E-value=1.9e-09  Score=93.29  Aligned_cols=161  Identities=13%  Similarity=0.025  Sum_probs=76.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      .-++++|.+|+|||||+++++...-      .....+++.......+...+.. ....++|+ +|.      ..+.....
T Consensus       156 ~~i~i~G~~~~GKssli~~~~~~~~------~~~~~~t~~~~~~~~~~~~~~~-~~~~l~Dt-~G~------~~~~~~~~  221 (332)
T 2wkq_A          156 IKCVVVGDGAVGKTCLLISYTTNAF------PGEYIPTVFDNYSANVMVDGKP-VNLGLWDT-AGL------EDYDRLRP  221 (332)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSCC------CCSCCCCSEEEEEEEEEETTEE-EEEEEEEE-CCC------GGGTTTGG
T ss_pred             eEEEEECCCCCChHHHHHHHHhCCC------CcccCCcccceeEEEEEECCEE-EEEEEEeC-CCc------hhhhHHHH
Confidence            3588999999999999999985421      0111122111000011111111 11246777 332      11111111


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCC----------cchHHHH
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERS----------GDSLDEL  181 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~----------~~~~~~~  181 (263)
                      .   .....|.+++-.+ +.++..+.... .....+.....   .++.++|+||+|+.+....          ....+..
T Consensus       222 ~---~~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~  294 (332)
T 2wkq_A          222 L---SYPQTDVFLICFS-LVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQG  294 (332)
T ss_dssp             G---GCTTCSEEEEEEE-TTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHH
T ss_pred             H---hccCCCEEEEEEe-CCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccccchhhhccccccccccHHHH
Confidence            1   1246788777332 34444332221 11111211111   2458999999999764200          0011112


Q ss_pred             HHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          182 EKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       182 ~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      .+..+..              +...++.+||++|.|++++...+...
T Consensus       295 ~~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~l~~~  327 (332)
T 2wkq_A          295 LAMAKEI--------------GAVKYLECSALTQRGLKTVFDEAIRA  327 (332)
T ss_dssp             HHHHHHT--------------TCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHc--------------CCcEEEEecCCCCcCHHHHHHHHHHH
Confidence            2222211              11257889999999999998887643

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.71  E-value=1.4e-08  Score=96.94  Aligned_cols=34  Identities=21%  Similarity=0.185  Sum_probs=25.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGE   70 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~   70 (263)
                      ..|+|+|.+|+|||||+|+|+    |.+++.+...+++
T Consensus        70 ~~V~VvG~~naGKSSLlNaLl----g~~~~~v~~~p~T  103 (695)
T 2j69_A           70 FRLLVLGDMKRGKSTFLNALI----GENLLPSDVNPCT  103 (695)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH----TSSCSCCCCCTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHh----CCCCCCCCCCCCc
Confidence            468899999999999999999    4444444444443

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.69  E-value=5e-09  Score=89.28  Aligned_cols=49  Identities=20%  Similarity=0.256  Sum_probs=42.7

Q ss_pred             CCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...+++++++|+++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus        17 ~~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           17 GSHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             --CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            345689999999999998899988776     7999999999999999999864

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.67  E-value=1.1e-07  Score=87.14  Aligned_cols=39  Identities=21%  Similarity=0.300  Sum_probs=31.7

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      ...+|+|+|++||||||++++|+..  ..|.+++++..|+.
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~  140 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF  140 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence            4568999999999999999999753  34889999998864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.66  E-value=6.2e-09  Score=87.95  Aligned_cols=45  Identities=22%  Similarity=0.323  Sum_probs=41.3

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus        24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence            79999999999998899988776     7999999999999999999864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.65  E-value=1.6e-08  Score=85.60  Aligned_cols=46  Identities=24%  Similarity=0.265  Sum_probs=40.8

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++++++|+++|++..++++.++.     +++|+|++|||||||++.|++
T Consensus        18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4579999999999998899988776     799999999999999999995

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.65  E-value=1.6e-08  Score=85.09  Aligned_cols=46  Identities=22%  Similarity=0.204  Sum_probs=41.9

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++|+++|++..++++.++.     +++|+|++|||||||++.|++.
T Consensus        14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcC
Confidence            579999999999998899987776     7999999999999999999864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.64  E-value=7.9e-09  Score=90.84  Aligned_cols=46  Identities=28%  Similarity=0.442  Sum_probs=42.1

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+|+++||+|+||+..+++++++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A            3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcC
Confidence            379999999999999999988776     7999999999999999999864

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.62  E-value=1.1e-08  Score=81.87  Aligned_cols=54  Identities=20%  Similarity=0.126  Sum_probs=34.7

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .+.++++||+|+.+....  ..+..++..+.  |..             .++.+||+++.+++++.+++..
T Consensus       135 ~~i~~v~nK~Dl~~~~~~--~~~~a~~l~~~--~~~-------------~~ld~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          135 IVIMLVGNKSDLRHLRAV--PTDEARAFAEK--NGL-------------SFIETSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             CEEEEEEECGGGGGGCCS--CHHHHHHHHHH--TTC-------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             CcEEEEEECccccccccc--CHHHHHHHHHH--cCC-------------EEEEEeCCCCCCHHHHHHHHHH
Confidence            347889999999754321  22333333322  333             3556899999999999887754

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.60  E-value=1.3e-07  Score=79.59  Aligned_cols=131  Identities=14%  Similarity=0.173  Sum_probs=63.0

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceE-eecchhHH
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCIC-CTVKHSLV  108 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~-~~~~~~~~  108 (263)
                      ++...|+++|.+|+|||||+|+|+.    .+.+.+....++|.......+...  +.. ..++|+ +|-.- ........
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~----~~~~~~~~~~~~t~~~~~~~~~~~--~~~-l~liDT-pG~~~~~~~~~~~~  105 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIG----EQVVRVSPFQAEGLRPVMVSRTMG--GFT-INIIDT-PGLVEAGYVNHQAL  105 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHT----SCCSCCCSSCC-CCCCEEEEEEET--TEE-EEEEEC-CCSEETTEECHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhC----CCCcccCCCCCcceeeEEEEEEEC--Cee-EEEEEC-CCCCCcccchHHHH
Confidence            3455789999999999999999994    333333333443332221111111  111 257888 45321 12233444


Q ss_pred             HHHHHHHHhccCCcEEEEcccC-CCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCC
Q 024744          109 QALEQLVQRKERLDHILLETTG-LANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSP  171 (263)
Q Consensus       109 ~~l~~~~~~~~~~d~ilie~~G-~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~  171 (263)
                      ..+.+.+. ...+|.+++-..- .......... + ...+...+......+.++|+||+|+.+.
T Consensus       106 ~~i~~~l~-~~~~~~il~V~~~d~~~~~~~~~~-~-~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          106 ELIKGFLV-NRTIDVLLYVDRLDVYAVDELDKQ-V-VIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             HHHHHHTT-TCEECEEEEEEESSCSCCCHHHHH-H-HHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             HHHHHHHh-cCCCCEEEEEEcCCCCCCCHHHHH-H-HHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence            45555543 3467887774211 1111111100 0 0111111111111237899999999754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.60  E-value=3e-08  Score=83.11  Aligned_cols=44  Identities=25%  Similarity=0.259  Sum_probs=40.7

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++++++++++|++..++++.++.     +++|+|++|||||||++.|++
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A            3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            69999999999998899988775     799999999999999999995

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.60  E-value=4.6e-08  Score=82.10  Aligned_cols=53  Identities=17%  Similarity=0.043  Sum_probs=34.5

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ++.++|.||+|+.+..    .++...+..+.. ..             ..++.+||++|.|++++..++..
T Consensus       199 ~piilV~NK~Dl~~~~----~v~~~~~~~~~~-~~-------------~~~~e~SAk~g~gv~elf~~l~~  251 (255)
T 3c5h_A          199 KPIVVVLTKCDEGVER----YIRDAHTFALSK-KN-------------LQVVETSARSNVNVDLAFSTLVQ  251 (255)
T ss_dssp             CCEEEEEECGGGBCHH----HHHHHHHHHHTS-SS-------------CCEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCEEEEEEcccccccH----HHHHHHHHHHhc-CC-------------CeEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999996542    223232222211 11             14678999999999999887754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.59  E-value=1.3e-08  Score=89.57  Aligned_cols=51  Identities=25%  Similarity=0.373  Sum_probs=40.6

Q ss_pred             CCCCCceEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            5 EEDPPLAVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+...++|++++|+++|++    ..+++++++.     +++|+|++|||||||++.|...
T Consensus        18 ~~~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           18 DDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             -----CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcC
Confidence            3445679999999999974    4678888776     7999999999999999999864

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=98.59  E-value=1.1e-07  Score=85.03  Aligned_cols=24  Identities=21%  Similarity=0.160  Sum_probs=21.2

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ...-++++|.+|+|||||+++|+.
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~   33 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTY   33 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHh
Confidence            345789999999999999999985

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.58  E-value=1.6e-08  Score=85.88  Aligned_cols=47  Identities=23%  Similarity=0.333  Sum_probs=41.4

Q ss_pred             CceEEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+|++++|+++|++   ..++++.++.     +++|+|++|||||||++.|++.
T Consensus        14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            457999999999987   6788887775     7999999999999999999864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.58  E-value=1.6e-08  Score=88.84  Aligned_cols=48  Identities=17%  Similarity=0.256  Sum_probs=43.0

Q ss_pred             CCceEEEecceeEe-CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.+++++++++++| |+..++++.++.     +++|+|++|||||||++.|.+.
T Consensus        11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            56789999999999 888888887765     7999999999999999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.58  E-value=1.6e-08  Score=84.36  Aligned_cols=45  Identities=18%  Similarity=0.273  Sum_probs=39.7

Q ss_pred             eEEEecceeEe-CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEF-SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~-~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++| ++.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A            1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            48899999999 667788887765     7999999999999999999864

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.57  E-value=2.1e-07  Score=83.84  Aligned_cols=39  Identities=23%  Similarity=0.392  Sum_probs=33.2

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~   70 (263)
                      ..+++++|++||||||++.+|...  ..|.++.++..|+..
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R  140 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR  140 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            469999999999999999999754  458999999988653

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=98.57  E-value=3.2e-08  Score=89.55  Aligned_cols=24  Identities=33%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ...-++++|.+|+|||||+++|+.
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~   28 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLM   28 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHH
Confidence            345688999999999999999984

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.57  E-value=1.6e-08  Score=89.55  Aligned_cols=45  Identities=27%  Similarity=0.425  Sum_probs=41.4

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +|+++||+|+||+..+++++++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A            3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcC
Confidence            58999999999999999988776     7999999999999999999864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.56  E-value=4.3e-08  Score=82.31  Aligned_cols=46  Identities=20%  Similarity=0.336  Sum_probs=41.3

Q ss_pred             ceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++++++++|+ +..++++.++.     +++|+|++|||||||++.|++.
T Consensus         3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C            3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred             ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3799999999999 88888887776     7999999999999999999865

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.56  E-value=3.2e-08  Score=80.98  Aligned_cols=46  Identities=20%  Similarity=0.250  Sum_probs=40.8

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..++++++++++|++ +++++.++.     +++|+|++|||||||++.|++.
T Consensus         8 ~~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A            8 GSKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             -CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            458999999999998 889888776     7999999999999999999864

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.56  E-value=1.4e-08  Score=84.43  Aligned_cols=45  Identities=27%  Similarity=0.330  Sum_probs=38.9

Q ss_pred             eEEEecceeEeCC----cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN----SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~----~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++||+++|++    ..+++++++.     +++|+|++|||||||++.|.+.
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            4899999999975    3578887766     7999999999999999999864

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=98.56  E-value=2e-08  Score=79.50  Aligned_cols=40  Identities=20%  Similarity=0.404  Sum_probs=33.8

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~   70 (263)
                      .+++++|+|++|||||||+++|+..  ..+.+++++.++++.
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~   46 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD   46 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence            3689999999999999999999875  357889999998765

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.53  E-value=3.1e-08  Score=87.62  Aligned_cols=45  Identities=24%  Similarity=0.382  Sum_probs=40.9

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++..++++.++.     +++|+|++|||||||++.|.+.
T Consensus        11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence            59999999999998899888776     7999999999999999999864

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.53  E-value=6.7e-08  Score=79.90  Aligned_cols=47  Identities=21%  Similarity=0.359  Sum_probs=40.8

Q ss_pred             CceEEEecceeEeC--CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~--~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..++++++++++|+  +.+++++.++.     +++|+|++|||||||++.|++.
T Consensus         4 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A            4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             CEEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            35799999999995  46788887766     7999999999999999999865

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.53  E-value=5.7e-08  Score=80.77  Aligned_cols=45  Identities=18%  Similarity=0.465  Sum_probs=39.9

Q ss_pred             eEEEecceeEeC--CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~--~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|+  +..++++.++.     +++|+|++|||||||++.|++.
T Consensus         3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A            3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred             eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            589999999998  46788887776     7999999999999999999864

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.51  E-value=2.9e-08  Score=87.37  Aligned_cols=45  Identities=22%  Similarity=0.299  Sum_probs=40.8

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++||+..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A            3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCC
Confidence            58999999999998889888776     7999999999999999999864

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.51  E-value=3.3e-08  Score=87.46  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=41.0

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++||+.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1            3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcC
Confidence            69999999999998899888776     7999999999999999999864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.51  E-value=5.4e-08  Score=87.28  Aligned_cols=46  Identities=24%  Similarity=0.269  Sum_probs=31.5

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----E--EEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----V--TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----v--v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ....+++++ +++||+.+ +++.++.     +  ++|+|++|||||||+|.|++.
T Consensus        13 ~~~~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           13 GCRTVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             ----CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             CCceEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            455667777 89998876 6654332     4  999999999999999999843

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=98.50  E-value=4.4e-07  Score=81.03  Aligned_cols=21  Identities=29%  Similarity=0.314  Sum_probs=19.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      -++++|.+|+|||||+++|+.
T Consensus         5 ~I~iiG~~~~GKSTLi~~L~~   25 (397)
T 1d2e_A            5 NVGTIGHVDHGKTTLTAAITK   25 (397)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHhC
Confidence            478999999999999999985

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.49  E-value=2e-07  Score=84.12  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=31.5

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      ..+++++|++|+||||++++|...  ..|.++.++..|+.
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~  138 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY  138 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence            348999999999999999999754  34788999988864

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.49  E-value=3.4e-08  Score=87.41  Aligned_cols=124  Identities=15%  Similarity=0.123  Sum_probs=65.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCC-CCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhH-HHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSL-VQA  110 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~-~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~-~~~  110 (263)
                      .++++|.+|+|||||+|+|++... ..+...+++.+|+|.......+..   .   ..++|+ ||..... ....+ .+.
T Consensus       164 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~---~~liDt-PG~~~~~~~~~~l~~~~  236 (369)
T 3ec1_A          164 DVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLES---G---ATLYDT-PGIINHHQMAHFVDARD  236 (369)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECST---T---CEEEEC-CSCCCCSSGGGGSCTTT
T ss_pred             cEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCC---C---eEEEeC-CCcCcHHHHHHHHhHHH
Confidence            588999999999999999985411 113456677888766543322221   1   247888 6653221 11111 123


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhH--HHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERS  174 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~--~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~  174 (263)
                      +..+.. ....+.+++    +.+|..-  ..-+..-+.+.    .. -.+.++++||.|.+...+.
T Consensus       237 l~~~~~-~~~i~~~~~----~l~~~~~~~~g~l~~l~~l~----~~-~~~~~~v~~k~d~~~~~~~  292 (369)
T 3ec1_A          237 LKIITP-KREIHPRVY----QLNEGQTLFFGGLARLDYIK----GG-RRSFVCYMANELTVHRTKL  292 (369)
T ss_dssp             HHHHSC-SSCCCCEEE----EECTTEEEEETTTEEEEEEE----SS-SEEEEEEECTTSCEEEEEG
T ss_pred             HHHHhc-ccccCceEE----EEcCCceEEECCEEEEEEcc----CC-CceEEEEecCCcccccccH
Confidence            333321 245566555    4444211  00000001111    11 1458899999999877643

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.49  E-value=3.5e-08  Score=86.95  Aligned_cols=45  Identities=22%  Similarity=0.392  Sum_probs=40.8

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++||+.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A            3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcC
Confidence            58999999999998889888776     7999999999999999999864

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.49  E-value=7.8e-08  Score=80.43  Aligned_cols=45  Identities=24%  Similarity=0.337  Sum_probs=39.6

Q ss_pred             eEEEecceeEe--CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEF--SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~--~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .|+++||+++|  ++..++++.++.     +++|+|++|||||||++.|++.
T Consensus         7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            58999999999  467788887765     7999999999999999999865

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.48  E-value=6.8e-08  Score=85.45  Aligned_cols=133  Identities=14%  Similarity=0.150  Sum_probs=67.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCC--CeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhH-HH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHG--KRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSL-VQ  109 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~--~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~-~~  109 (263)
                      .++++|.+|+|||||+|+|++...+  .+...+++.+|+|.......+..   .   ..++|+ ||..... ....+ .+
T Consensus       162 ~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~---~~liDt-PG~~~~~~~~~~l~~~  234 (368)
T 3h2y_A          162 DVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE---E---SSLYDT-PGIINHHQMAHYVGKQ  234 (368)
T ss_dssp             CEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS---S---CEEEEC-CCBCCTTSGGGGSCHH
T ss_pred             eEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC---C---eEEEeC-CCcCcHHHHHHHhhHH
Confidence            5789999999999999999865221  23455778888866544322221   1   247888 6653221 11111 23


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCCchhH--HHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          110 ALEQLVQRKERLDHILLETTGLANPAPL--ASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~p~~~--~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      .+..+.. ....+.+++    +.+|..-  ..-+..-+.+..    . -.+.++++||+|.+...+    +++..+.+++
T Consensus       235 ~l~~~~~-~~~i~~~~~----~l~~~~~~~~g~l~~~d~l~~----~-~~~~~~v~nk~d~~~~~~----~~~~~~~~~~  300 (368)
T 3h2y_A          235 SLKLITP-TKEIKPMVF----QLNEEQTLFFSGLARFDYVSG----G-RRAFTCHFSNRLTIHRTK----LEKADELYKN  300 (368)
T ss_dssp             HHHHHSC-SSCCCCEEE----EECTTEEEEETTTEEEEEEES----S-SEEEEEEECTTSCEEEEE----HHHHHHHHHH
T ss_pred             HHHHhcc-ccccCceEE----EEcCCCEEEEcceEEEEEecC----C-CceEEEEecCcccccccc----HHHHHHHHHH
Confidence            3333322 245555555    3344211  000100111111    1 145899999999987753    4555555554

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.47  E-value=2.7e-06  Score=81.14  Aligned_cols=25  Identities=28%  Similarity=0.286  Sum_probs=22.3

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHc
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .....++|+|.+|+|||||+++|+.
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~   34 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILY   34 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHH
Confidence            3567899999999999999999984

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.47  E-value=9.5e-08  Score=80.78  Aligned_cols=45  Identities=24%  Similarity=0.409  Sum_probs=39.4

Q ss_pred             eEEEecceeEeC--C---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFS--N---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~--~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|+  +   ..++++.++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            689999999997  4   5688887776     7999999999999999999864

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.47  E-value=9.3e-08  Score=89.56  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=22.5

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHc
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+.|.++|+|.+|+|||||+++|+.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~   27 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRG   27 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhc
Confidence            4568999999999999999999985

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.46  E-value=9.7e-08  Score=80.45  Aligned_cols=47  Identities=13%  Similarity=0.307  Sum_probs=40.5

Q ss_pred             CceEEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++|++++|+++|++   ..++++.++.     +++|+|++|||||||++.|++.
T Consensus        15 ~~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             CCCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            457999999999986   3578877665     7999999999999999999864

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.46  E-value=3.8e-08  Score=84.85  Aligned_cols=47  Identities=21%  Similarity=0.333  Sum_probs=40.9

Q ss_pred             CceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...|+++||+++|+ +..+++++++.     +++|+|++|||||||++.|++.
T Consensus        51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTS
T ss_pred             CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcC
Confidence            45699999999995 57788888776     7999999999999999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.46  E-value=1.4e-07  Score=83.90  Aligned_cols=49  Identities=20%  Similarity=0.272  Sum_probs=42.7

Q ss_pred             CCCceEEEecceeEe--CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDETTHEF--SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.+..|++++|+++|  ++..+++++++.     +++|+|++|||||||++.|...
T Consensus        15 ~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           15 PSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             SSSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             CCCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence            345689999999999  678889988776     7999999999999999999853

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=98.46  E-value=4e-08  Score=89.68  Aligned_cols=24  Identities=42%  Similarity=0.360  Sum_probs=20.9

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ....++++|.+|+|||||+++|+.
T Consensus        42 ~~~~i~iiG~vd~GKSTLi~~Ll~   65 (467)
T 1r5b_A           42 EHVNIVFIGHVDAGKSTLGGNILF   65 (467)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CeeEEEEEECCCCCHHHHHHHHHH
Confidence            345789999999999999999974

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.44  E-value=4.2e-08  Score=86.00  Aligned_cols=44  Identities=27%  Similarity=0.389  Sum_probs=39.5

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++|++. ++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A            1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcC
Confidence            48899999999987 88888776     7999999999999999999864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.44  E-value=3.2e-08  Score=87.02  Aligned_cols=45  Identities=24%  Similarity=0.343  Sum_probs=40.6

Q ss_pred             eEEEecceeEeCCcc--cCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSH--ENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~--~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++||+.+  ++++.++.     +++|+|++|||||||++.|.+.
T Consensus         3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K            3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            589999999999888  88888776     7999999999999999999864

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.44  E-value=2.5e-07  Score=88.28  Aligned_cols=25  Identities=28%  Similarity=0.247  Sum_probs=22.5

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHc
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..+..++|+|.+|+|||||+|+|+.
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~   32 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILY   32 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999999984

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.40  E-value=7.1e-08  Score=80.32  Aligned_cols=43  Identities=23%  Similarity=0.213  Sum_probs=36.6

Q ss_pred             eEEEecceeEeCCcccCCCcceE----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++++||+  .+++.++.    +++|+|++|||||||++.|.+.
T Consensus         1 ml~~~~l~~~y~~--~l~~isl~i~~e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A            1 MFLKVRAEKRLGN--FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             CCEEEEEEEEETT--EEEEEEEEECSSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEEEEEEeCC--EEeeeEEEECCEEEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999986  37766554    7999999999999999999864

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.36  E-value=5.5e-08  Score=89.15  Aligned_cols=24  Identities=33%  Similarity=0.594  Sum_probs=21.8

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +.|.++++|.+|+|||||+++|..
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~   26 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRS   26 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHc
Confidence            457899999999999999999985

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.35  E-value=2e-06  Score=85.29  Aligned_cols=24  Identities=25%  Similarity=0.203  Sum_probs=21.1

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ....|+++|.+|+|||||+++|+.
T Consensus       295 ~~lnIvIIGhvDvGKSTLInrLt~  318 (1289)
T 3avx_A          295 PHVNVGTIGHVDHGKTTLTAAITT  318 (1289)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeeEEEEEcCCCCCHHHHHHHHHh
Confidence            345689999999999999999985

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.34  E-value=2.3e-07  Score=78.32  Aligned_cols=45  Identities=20%  Similarity=0.322  Sum_probs=39.2

Q ss_pred             eEEEecceeEeCC----cccCCCcceE----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN----SHENDDVSVG----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~----~~~~~~~~~~----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++|++    ..++++.++.    +++|+|++|||||||++.|+..
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVNGEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEECSSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEECCEEEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999987    7788877665    7999999999999999999853

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.27  E-value=4e-06  Score=75.44  Aligned_cols=38  Identities=18%  Similarity=0.312  Sum_probs=32.0

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      ..+++++|++||||||++.+|...  ..|.++.++..|..
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~  136 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY  136 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence            458999999999999999999753  45889999988864

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.25  E-value=9.3e-07  Score=82.79  Aligned_cols=47  Identities=23%  Similarity=0.306  Sum_probs=41.1

Q ss_pred             CceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...++++||+++|++  .+++++.++.     +++|+|++|||||||++.|++.
T Consensus       339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            357999999999975  6788888765     7999999999999999999864

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.24  E-value=4.7e-07  Score=85.19  Aligned_cols=48  Identities=15%  Similarity=0.259  Sum_probs=27.9

Q ss_pred             CCceEEEecceeEeCCc--cc------------CCCcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNS--HE------------NDDVSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~--~~------------~~~~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++..++++++++.|+..  +.            -....+|.++|+|++|||||||++.|++.
T Consensus         7 ~~~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A            7 SPGSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred             CCchhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCC
Confidence            35578999999999752  11            13467899999999999999999999864

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.24  E-value=7.5e-06  Score=77.79  Aligned_cols=24  Identities=29%  Similarity=0.535  Sum_probs=21.6

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ....++|+|.+|+|||||+++|+.
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~   31 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLY   31 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCChHHHHHHHHHH
Confidence            456899999999999999999984

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.17  E-value=3.1e-06  Score=78.30  Aligned_cols=25  Identities=24%  Similarity=0.178  Sum_probs=21.9

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +...++|+|.+|+|||||+++|+..
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~   36 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLF   36 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhh
Confidence            4567899999999999999999853

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.12  E-value=7.1e-06  Score=69.34  Aligned_cols=22  Identities=41%  Similarity=0.591  Sum_probs=19.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++|+|++|||||||+|.|++.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999864

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.11  E-value=2.2e-05  Score=75.07  Aligned_cols=24  Identities=29%  Similarity=0.270  Sum_probs=21.5

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++..++|+|..|+|||||+++|+.
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~   32 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILF   32 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHH
Confidence            456899999999999999999974

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.11  E-value=1.6e-06  Score=72.55  Aligned_cols=42  Identities=21%  Similarity=0.302  Sum_probs=36.4

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++|++++    .++++.++.     +++|+|++|||||||++.|++.
T Consensus         3 ~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C            3 IVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            37999999987    677877665     7999999999999999999854

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.09  E-value=1.1e-06  Score=82.67  Aligned_cols=47  Identities=17%  Similarity=0.293  Sum_probs=41.0

Q ss_pred             CceEEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...|+++||+++|++ .+++++.++.     +++|+|++|||||||++.|++.
T Consensus       352 ~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          352 RGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             CCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTS
T ss_pred             CCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            346999999999975 6688988776     8999999999999999999864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.08  E-value=1.3e-05  Score=69.55  Aligned_cols=38  Identities=26%  Similarity=0.378  Sum_probs=30.7

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      -.+++++|++|||||||++.|...  ..+.++.+...+..
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~  168 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF  168 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence            349999999999999999999764  34678888777653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.06  E-value=9.2e-07  Score=82.90  Aligned_cols=47  Identities=23%  Similarity=0.294  Sum_probs=40.6

Q ss_pred             CceEEEecceeEeC--CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~--~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...|+++||+++|+  +.+++++.++.     +++|+|++|||||||++.|++.
T Consensus       339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred             CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45799999999995  46788887665     7999999999999999999864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.06  E-value=2.4e-06  Score=79.97  Aligned_cols=47  Identities=17%  Similarity=0.263  Sum_probs=40.8

Q ss_pred             CceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...|+++||+++|++  .+++++.++.     +++|+|++|||||||++.|++.
T Consensus       339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence            357999999999974  6788887665     7999999999999999999864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.05  E-value=1.4e-06  Score=81.78  Aligned_cols=49  Identities=27%  Similarity=0.316  Sum_probs=39.8

Q ss_pred             CCCceEEE--------ecceeEeCCcc-cCCCcc-eE---EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRI--------DETTHEFSNSH-ENDDVS-VG---VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~--------~~~~~~~~~~~-~~~~~~-~~---vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ||-.+|++        ++++++||+.. ++.+.+ ++   +++|+|++|||||||++.|.+.
T Consensus        79 ~p~~~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A           79 CPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             CSSCCCEEEEECTTGGGSEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCcceEEEecCCccccCCeEEEECCCCeeeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCC
Confidence            34457899        99999998863 676665 22   8999999999999999999864

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.03  E-value=9.9e-07  Score=82.54  Aligned_cols=47  Identities=26%  Similarity=0.428  Sum_probs=40.5

Q ss_pred             CceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...++++||+++|++  .+++++.++.     +++|+|++|||||||++.|++.
T Consensus       337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence            357999999999975  5688887665     7999999999999999999864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.00  E-value=5.5e-06  Score=81.23  Aligned_cols=49  Identities=27%  Similarity=0.184  Sum_probs=42.1

Q ss_pred             CCCCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744            6 EDPPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +.....+...+++++||+..+++++++.     +++|+|++|||||||++.|.+
T Consensus       430 ~~~~~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          430 EDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             CSSSCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccccceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3445567777999999999999988776     799999999999999999984

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.00  E-value=2.6e-06  Score=83.53  Aligned_cols=48  Identities=23%  Similarity=0.376  Sum_probs=41.4

Q ss_pred             CCceEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.++++++|++++|++  .+++++.++.     +++|+|++|||||||++.|++.
T Consensus       668 ~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGl  722 (986)
T 2iw3_A          668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGE  722 (986)
T ss_dssp             TSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTS
T ss_pred             CCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3568999999999975  5678887665     7999999999999999999865

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.99  E-value=3.9e-05  Score=71.21  Aligned_cols=24  Identities=29%  Similarity=0.266  Sum_probs=21.6

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++.-++|+|-.++|||||..+|+.
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~   53 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLL   53 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHH
Confidence            567899999999999999999964

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.99  E-value=2.5e-06  Score=72.85  Aligned_cols=59  Identities=17%  Similarity=0.191  Sum_probs=34.0

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccCC--------CCeEEEEecCC
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGKH--------GKRIAVILNEF   68 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~~--------~~~~~ii~~~~   68 (263)
                      ..+.++++++++++  ..++++.++.     +++|+|++|||||||++.|++..+        +.+++++.+++
T Consensus        37 ~~~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~~  108 (290)
T 2bbs_A           37 GDDSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNS  108 (290)
T ss_dssp             -------------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSSC
T ss_pred             CCceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCCC
Confidence            34679999999863  5678877665     799999999999999999986421        12456666553

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.97  E-value=1.9e-06  Score=75.49  Aligned_cols=51  Identities=27%  Similarity=0.304  Sum_probs=43.6

Q ss_pred             CCCCCceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccC
Q 024744            5 EEDPPLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      ...++++++.+++++.|+ +.++++++ ++     +++|+|++|||||||++.|++..
T Consensus        39 ~~~~~~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~   95 (347)
T 2obl_A           39 YAEPPDPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGA   95 (347)
T ss_dssp             CCCCSCSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCCCCCCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            345667899999999998 67888877 55     79999999999999999998763

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.91  E-value=1.4e-06  Score=72.92  Aligned_cols=48  Identities=13%  Similarity=0.230  Sum_probs=25.3

Q ss_pred             CCCceEEEecc-eeEe-CCcccCCCcc--------eEEEEEEccCCCcHHHHHHHHHc
Q 024744            7 DPPLAVRIDET-THEF-SNSHENDDVS--------VGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus         7 ~~~~~~~~~~~-~~~~-~~~~~~~~~~--------~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +.+++++++++ +++| ++.+++++++        -..++|+|++||||||+.+.|.+
T Consensus        13 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           13 NSSALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             -------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred             ccCCceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            34568999999 9999 7777776642        34799999999999999999974

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.91  E-value=8.7e-07  Score=68.91  Aligned_cols=44  Identities=25%  Similarity=0.321  Sum_probs=34.7

Q ss_pred             EEEecceeEeCCcccCCCc-----ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDV-----SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~-----~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +...+++++||+..++++.     .-.+++|+|++|||||||++.|++.
T Consensus         8 ~~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A            8 IPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             ECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            3345588999887777763     3348999999999999999999853

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=97.87  E-value=6.8e-06  Score=69.91  Aligned_cols=38  Identities=32%  Similarity=0.294  Sum_probs=22.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCccccc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGV   74 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~   74 (263)
                      ..++++|.||+|||||+|+|+    +.+.+.+.+.+|+|...
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~----~~~~~~~~~~~g~T~~~  158 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLA----KKNIAKTGDRPGITTSQ  158 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH----TSCCC------------
T ss_pred             ceEEEEecCCCchHHHHHHHh----cCceeecCCCCCeeeee
Confidence            368899999999999999999    66666677778876544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.84  E-value=6.5e-07  Score=76.97  Aligned_cols=45  Identities=16%  Similarity=-0.001  Sum_probs=37.3

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccC
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      .|++++|+++|+ .++++++++.     +++|+|++|||||||++.|++..
T Consensus       101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            588999999998 6667665433     89999999999999999998544

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.82  E-value=5.8e-06  Score=76.61  Aligned_cols=45  Identities=24%  Similarity=0.316  Sum_probs=34.2

Q ss_pred             eEEE-ecceeEeCCc-ccCCCcc-eE---EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRI-DETTHEFSNS-HENDDVS-VG---VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~-~~~~~~~~~~-~~~~~~~-~~---vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..++ +||+++||+. .++.+.+ +.   +++|+|++|||||||++.|.+.
T Consensus        20 ~~~~~~~ls~~yg~~~~~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           20 MEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             ----CCCEEEECSTTCCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             ChhHhcCcEEEECCccccccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3566 5899999986 3677665 22   8999999999999999999864

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.81  E-value=4.2e-06  Score=75.58  Aligned_cols=49  Identities=14%  Similarity=0.129  Sum_probs=42.2

Q ss_pred             CCCceEEEecceeEeC-CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccC
Q 024744            7 DPPLAVRIDETTHEFS-NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus         7 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      .++++++++++++.|+ +.++++++ ++     +++|+|++|||||||++.|++..
T Consensus       127 ~~~~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          127 PPFNPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CCCCTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CCCCceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            4567899999999997 67788877 66     89999999999999999998753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=97.73  E-value=2.9e-05  Score=72.94  Aligned_cols=47  Identities=19%  Similarity=0.220  Sum_probs=37.5

Q ss_pred             CCceEEEecceeEeCCcccCCCcc--eE---EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVS--VG---VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~--~~---vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +..++++++++++|++. .+...+  ++   +++|+|++|||||||++.|.+.
T Consensus       354 ~~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          354 RETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             CCEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            35789999999999874 233322  22   8999999999999999999864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.72  E-value=2.2e-05  Score=80.00  Aligned_cols=47  Identities=19%  Similarity=0.169  Sum_probs=40.2

Q ss_pred             CceEEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...|+++||+++|.+   .+++++.++.     .++|+|++|||||||++.|.+-
T Consensus      1074 ~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1074 YGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             CCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTS
T ss_pred             CCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcC
Confidence            347999999999964   3578888776     6999999999999999999864

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=97.71  E-value=4.1e-05  Score=72.35  Aligned_cols=25  Identities=8%  Similarity=0.046  Sum_probs=20.4

Q ss_pred             hhhhccccCCcchhhhhhhhhhhhc
Q 024744          205 SEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       205 ~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                      .+++..||+++.|++.|.+.+..+.
T Consensus       213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~  237 (638)
T 3j25_A          213 FPLYHGSAKSNIGIDNLIEVITNKF  237 (638)
T ss_dssp             CCCCCCCSTTCCSHHHHHHHHHHSC
T ss_pred             ccccccccccCCCchhHhhhhhccc
Confidence            3567789999999999999887643

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.71  E-value=3.2e-05  Score=71.60  Aligned_cols=60  Identities=17%  Similarity=0.157  Sum_probs=43.8

Q ss_pred             CCceEEEecceeEeCCcccCCCcc--e---EEEEEEccCCCcHHHHHHHHHccCC--------CCeEEEEecCC
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVS--V---GVTVITGFLGAGKSTLVNYILNGKH--------GKRIAVILNEF   68 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~--~---~vv~i~G~~gaGKSTLin~l~~~~~--------~~~~~ii~~~~   68 (263)
                      +.+++++++++++|++. .+...+  +   .+++|+|++|||||||++.|.+..+        ..+++++.++.
T Consensus       284 ~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~  356 (538)
T 1yqt_A          284 RETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYI  356 (538)
T ss_dssp             CCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSC
T ss_pred             CCeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCC
Confidence            35689999999999874 233322  2   2899999999999999999987521        23466666653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.71  E-value=1.2e-05  Score=81.68  Aligned_cols=46  Identities=15%  Similarity=0.216  Sum_probs=40.0

Q ss_pred             ceEEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..|+++||+++|++   .+++++.++.     .++|+|++|||||||++.|++.
T Consensus       386 g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~  439 (1284)
T 3g5u_A          386 GNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRL  439 (1284)
T ss_dssp             CCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred             CeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46999999999975   3578887775     7999999999999999999764

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.68  E-value=1.8e-05  Score=74.32  Aligned_cols=49  Identities=27%  Similarity=0.308  Sum_probs=34.3

Q ss_pred             CCCceEEEec--------ceeEeCCcc-cCCCcceE----EEEEEccCCCcHHHHHHHHHcc
Q 024744            7 DPPLAVRIDE--------TTHEFSNSH-ENDDVSVG----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         7 ~~~~~~~~~~--------~~~~~~~~~-~~~~~~~~----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ||=.+|++.|        ++++||... .+.....+    +++|+|++|||||||++.|.+.
T Consensus        65 cp~~~i~i~nl~~~~~~~~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B           65 CPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             CSSCCEEEEEESSSSSTTEEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCccceEEecCChhhcCCeEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcC
Confidence            4555677744        567776543 22222222    8999999999999999999864

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.65  E-value=3.5e-06  Score=68.51  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=30.8

Q ss_pred             eeEeCCcccCCCcceE-EEEEEccCCCcHHHHHHHHHc
Q 024744           18 THEFSNSHENDDVSVG-VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        18 ~~~~~~~~~~~~~~~~-vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .|+||+..+++++.-. +++|+|++|||||||++.|+.
T Consensus         7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A            7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHHHHHH
T ss_pred             cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHHHHhc
Confidence            4677877788776444 899999999999999999984

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.64  E-value=4.2e-05  Score=77.93  Aligned_cols=47  Identities=15%  Similarity=0.297  Sum_probs=40.2

Q ss_pred             CceEEEecceeEeCC---cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSN---SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~---~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...|+++||+++|.+   .+++++.++.     .++|+|++|||||||++.|++.
T Consensus       413 ~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~  467 (1321)
T 4f4c_A          413 KGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRY  467 (1321)
T ss_dssp             CCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTS
T ss_pred             CCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccc
Confidence            347999999999965   4678887665     7999999999999999999874

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.64  E-value=7.2e-05  Score=69.79  Aligned_cols=25  Identities=32%  Similarity=0.432  Sum_probs=22.1

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHc
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ....+|+|+|+||+|||||+|+|++
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g   60 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAG   60 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcC
Confidence            3556899999999999999999994

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=97.63  E-value=2.6e-05  Score=67.56  Aligned_cols=20  Identities=20%  Similarity=0.506  Sum_probs=18.0

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      ++++|.+|+|||||++++..
T Consensus         2 IvllGdsgvGKTSLl~~~~~   21 (331)
T 3r7w_B            2 VLLMGVRRCGKSSICKVVFH   21 (331)
T ss_dssp             EEEECSTTSSTTHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            57999999999999998874

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.63  E-value=2.6e-05  Score=79.26  Aligned_cols=47  Identities=19%  Similarity=0.235  Sum_probs=40.8

Q ss_pred             CceEEEecceeEeCCc---ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...|+++||+++|+++   +++++.++.     +++|+|++|||||||++.|.+.
T Consensus      1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~ 1082 (1284)
T 3g5u_A         1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF 1082 (1284)
T ss_dssp             SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTS
T ss_pred             CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3569999999999764   588888776     7999999999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.62  E-value=5.2e-05  Score=70.20  Aligned_cols=48  Identities=15%  Similarity=0.194  Sum_probs=37.9

Q ss_pred             CCceEEEecceeEeCCcccC-CCcceE---EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNSHEN-DDVSVG---VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~-~~~~~~---vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+.+++++++++|++.... .+..++   +++|+|++|||||||++.|.+.
T Consensus       266 ~~~~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          266 LKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             CCEEEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             ccceEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            45789999999999985432 122333   8999999999999999999864

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.62  E-value=5.3e-06  Score=71.43  Aligned_cols=57  Identities=16%  Similarity=0.195  Sum_probs=39.6

Q ss_pred             CceEEEecceeEeCCcccCCCc------------------------ceEEEEEEccCCCcHHHHHHHHHcc----CCCCe
Q 024744            9 PLAVRIDETTHEFSNSHENDDV------------------------SVGVTVITGFLGAGKSTLVNYILNG----KHGKR   60 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~------------------------~~~vv~i~G~~gaGKSTLin~l~~~----~~~~~   60 (263)
                      +.+|++++|++.|+.  ++++.                        .-.+++|+|++|||||||++.|.+.    ..+.+
T Consensus        35 ~~~i~~~~v~~~y~~--~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~  112 (308)
T 1sq5_A           35 NEDLSLEEVAEIYLP--LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR  112 (308)
T ss_dssp             CTTCCHHHHHHTHHH--HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred             ccccchHhHHHHHHH--HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence            356888999999953  22221                        2248999999999999999999763    23455


Q ss_pred             EEEEecC
Q 024744           61 IAVILNE   67 (263)
Q Consensus        61 ~~ii~~~   67 (263)
                      +.++..+
T Consensus       113 i~vi~~d  119 (308)
T 1sq5_A          113 VELITTD  119 (308)
T ss_dssp             EEEEEGG
T ss_pred             EEEEecC
Confidence            6665544

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.59  E-value=0.00022  Score=60.92  Aligned_cols=37  Identities=30%  Similarity=0.307  Sum_probs=31.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc---CCCCeEEEEecCCC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFG   69 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~---~~~~~~~ii~~~~g   69 (263)
                      .+++++|++||||||++..|...   ..|+++.++..|..
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~  145 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY  145 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence            48999999999999999999753   35889999998864

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.58  E-value=3.6e-05  Score=61.87  Aligned_cols=34  Identities=21%  Similarity=0.214  Sum_probs=24.3

Q ss_pred             CcccCCCcceEEEEEEccCCCcHHHHHHHHHccC
Q 024744           23 NSHENDDVSVGVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        23 ~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      +++-++.+.-.+++|+|++|||||||+++|++..
T Consensus        10 ~~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           10 GRENLYFQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             ------CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             ccccCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            3455555666689999999999999999998654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.58  E-value=3.7e-05  Score=64.64  Aligned_cols=37  Identities=32%  Similarity=0.460  Sum_probs=22.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIG   73 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~   73 (263)
                      ..++++|.||+|||||+|+|.    +.+...+.+.+|+|..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~----~~~~~~~~~~~g~T~~  136 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLK----GKRASSVGAQPGITKG  136 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH----TTCC----------CC
T ss_pred             hheEEeCCCCCCHHHHHHHHh----cccccccCCCCCCccc
Confidence            467899999999999999999    4444445555666543

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.56  E-value=0.00029  Score=63.38  Aligned_cols=40  Identities=25%  Similarity=0.356  Sum_probs=33.2

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc--CC-CCeEEEEecCCCc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG--KH-GKRIAVILNEFGE   70 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~-~~~~~ii~~~~g~   70 (263)
                      ...+++++|.+|+||||+...|...  .. |+++.++..|+..
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r  141 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR  141 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            3458889999999999999999754  34 8999999999754

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=97.56  E-value=1e-05  Score=71.86  Aligned_cols=22  Identities=36%  Similarity=0.330  Sum_probs=20.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..++|+|+||||||||+|+|++
T Consensus        21 ~~vgiVG~pnaGKSTL~n~Ltg   42 (392)
T 1ni3_A           21 LKTGIVGMPNVGKSTFFRAITK   42 (392)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            4789999999999999999995

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.55  E-value=1.2e-05  Score=67.65  Aligned_cols=41  Identities=20%  Similarity=0.292  Sum_probs=29.4

Q ss_pred             eEEEecceeEeCCcccCCCcce---EEEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSV---GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~---~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++++++    +++++.++   .+++|+|++|||||||++.|+..
T Consensus         5 ~~~l~~l~~~----~vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A            5 IPEFKKLGLP----DKVLELCHRKMGLILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             -CCGGGSSCC----THHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHH
T ss_pred             CCChHHCCCH----HHHHHHhhCCCCEEEEECCCCccHHHHHHHHHHh
Confidence            4556666653    34444333   38999999999999999999864

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.54  E-value=4.4e-05  Score=60.19  Aligned_cols=24  Identities=21%  Similarity=0.404  Sum_probs=21.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      .+++|+|++|||||||++.|.+..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            478999999999999999998643

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.52  E-value=4.5e-05  Score=63.18  Aligned_cols=35  Identities=17%  Similarity=0.238  Sum_probs=19.7

Q ss_pred             EeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHc
Q 024744           20 EFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        20 ~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +-|+..++++.++.     +++|+|++|||||||++.|.+
T Consensus         8 ~~~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A            8 SSGVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             ---------------CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            33455566655443     799999999999999999975

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.51  E-value=4.3e-05  Score=61.64  Aligned_cols=35  Identities=29%  Similarity=0.383  Sum_probs=27.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCC--CCeEEEEecC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKH--GKRIAVILNE   67 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~--~~~~~ii~~~   67 (263)
                      .+++|+|++|||||||++.|....+  |...+++..+
T Consensus        23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d   59 (208)
T 3c8u_A           23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD   59 (208)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence            4899999999999999999975421  3456666654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.49  E-value=9.5e-05  Score=58.39  Aligned_cols=23  Identities=30%  Similarity=0.541  Sum_probs=20.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++|+|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            37899999999999999999854

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.47  E-value=5.8e-05  Score=60.30  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++|+|++|||||||++.|.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            37999999999999999999864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.47  E-value=5.9e-05  Score=60.79  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=20.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHccC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      +++|+|++|||||||++.|++..
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhC
Confidence            89999999999999999998643

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.47  E-value=3.1e-05  Score=71.71  Aligned_cols=41  Identities=17%  Similarity=0.224  Sum_probs=30.6

Q ss_pred             ecceeEeCCccc-CCCcceE----EEEEEccCCCcHHHHHHHHHcc
Q 024744           15 DETTHEFSNSHE-NDDVSVG----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        15 ~~~~~~~~~~~~-~~~~~~~----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++||.... +.+..+|    +++|+|++|||||||++.|++.
T Consensus         3 ~~~~~~~~~~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A            3 GEVIHRYKVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             CCEEEESSTTSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCceecCCCceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            357899987432 1223333    8999999999999999999854

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.45  E-value=6.6e-05  Score=59.31  Aligned_cols=22  Identities=45%  Similarity=0.607  Sum_probs=19.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++|+|++|||||||++.|++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999753

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.44  E-value=0.0003  Score=60.76  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=31.6

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      -.+++++|++|+||||++..|...  ..++++.++..|..
T Consensus       105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~  144 (320)
T 1zu4_A          105 LNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF  144 (320)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            358999999999999999999654  35889999888764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.44  E-value=5.3e-05  Score=60.70  Aligned_cols=40  Identities=25%  Similarity=0.238  Sum_probs=25.4

Q ss_pred             ecceeEeCCcccCCC-----cceEEEEEEccCCCcHHHHHHHHHc
Q 024744           15 DETTHEFSNSHENDD-----VSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        15 ~~~~~~~~~~~~~~~-----~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +|+++.+|+....+.     ..-.+++|+|++||||||+.+.|..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A            3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            467777777554432     2335899999999999999999974

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.44  E-value=5.5e-05  Score=60.65  Aligned_cols=22  Identities=41%  Similarity=0.596  Sum_probs=20.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++|+|++|||||||++.|++.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999853

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.44  E-value=2.4e-05  Score=70.13  Aligned_cols=57  Identities=19%  Similarity=0.252  Sum_probs=38.4

Q ss_pred             eEEEecceeEeCCcccCCCc---ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 024744           11 AVRIDETTHEFSNSHENDDV---SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE   67 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~---~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~   67 (263)
                      .++++++.+.|+....+.+.   .-.+++|+|++|||||||++.|+..  ....++.++..+
T Consensus       143 ~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~  204 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP  204 (418)
T ss_dssp             CCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred             CCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence            34566677777654444332   3348999999999999999999864  234556555543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.43  E-value=5.2e-05  Score=66.63  Aligned_cols=37  Identities=27%  Similarity=0.127  Sum_probs=23.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE   75 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d   75 (263)
                      -++|+|.||||||||+|+|++.    + +.+.+.+++|+...
T Consensus         4 kI~IVG~pnvGKSTL~n~Lt~~----~-~~v~~~p~tTi~p~   40 (363)
T 1jal_A            4 KCGIVGLPNVGKSTLFNALTKA----G-IEAANYPFCTIEPN   40 (363)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT----C-------CCCCCCCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC----C-CcccCCCCceECce
Confidence            4789999999999999999943    3 33445455445433

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.41  E-value=8.2e-05  Score=59.86  Aligned_cols=35  Identities=26%  Similarity=0.272  Sum_probs=26.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF   68 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~   68 (263)
                      .+++|+|++|||||||++.|.+... .+++++..+.
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~~~-~~i~~v~~d~   41 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALARTLG-ERVALLPMDH   41 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHG-GGEEEEEGGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEecCc
Confidence            4799999999999999999984311 1377777664

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.41  E-value=5.8e-05  Score=67.01  Aligned_cols=34  Identities=26%  Similarity=0.143  Sum_probs=19.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCccc
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEI   72 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~   72 (263)
                      .++|+|+||||||||+|+|+    +.++ .+.+.+++|+
T Consensus        24 kvgIVG~pnvGKSTL~n~Lt----g~~~-~~~~~p~tTi   57 (396)
T 2ohf_A           24 KIGIVGLPNVGKSTFFNVLT----NSQA-SAENFPFCTI   57 (396)
T ss_dssp             CEEEECCSSSSHHHHHHHHH----C--------------
T ss_pred             EEEEECCCCCCHHHHHHHHH----CCCc-cccCCCcccc
Confidence            57899999999999999999    4443 3444444444

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=97.40  E-value=0.00011  Score=71.66  Aligned_cols=26  Identities=23%  Similarity=0.342  Sum_probs=22.6

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+.-++|+|.+|+|||||+++|+..
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~   42 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQR   42 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHh
Confidence            35678999999999999999999853

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.40  E-value=8e-05  Score=60.86  Aligned_cols=24  Identities=29%  Similarity=0.517  Sum_probs=21.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      .+++|+|++|||||||++.|++..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            389999999999999999998653

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.38  E-value=8.7e-05  Score=58.02  Aligned_cols=20  Identities=35%  Similarity=0.532  Sum_probs=18.7

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~   53 (263)
                      +++++|++|||||||++.+.
T Consensus        11 i~~l~G~nGsGKSTl~~~~~   30 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHF   30 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            88999999999999999865

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.36  E-value=0.00033  Score=62.78  Aligned_cols=56  Identities=13%  Similarity=0.147  Sum_probs=39.8

Q ss_pred             ecceeEeCCcc-cCCCcceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744           15 DETTHEFSNSH-ENDDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (263)
Q Consensus        15 ~~~~~~~~~~~-~~~~~~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~   70 (263)
                      +++++.||+.. .++-....+++++|++|+||||++..|...  ..+.++.++..|+..
T Consensus        80 ~~L~~~~~~~~~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           80 EALKEALGGEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             HHHHHHTTSSCCCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             HHHHHHhCCCcccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            34667777643 111113348889999999999999999764  458899999888653

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.33  E-value=9.8e-05  Score=57.96  Aligned_cols=22  Identities=45%  Similarity=0.595  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+.+|+|++|||||||+++|..
T Consensus        27 g~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999999963

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.33  E-value=0.00017  Score=62.15  Aligned_cols=62  Identities=11%  Similarity=-0.001  Sum_probs=43.4

Q ss_pred             CCceEEEecceeEeCCccc-------------------C------C-CcceEEEEEEccCCCcHHHHHHHHHcc---CCC
Q 024744            8 PPLAVRIDETTHEFSNSHE-------------------N------D-DVSVGVTVITGFLGAGKSTLVNYILNG---KHG   58 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~-------------------~------~-~~~~~vv~i~G~~gaGKSTLin~l~~~---~~~   58 (263)
                      .+..|++++|++.|+....                   +      . ...-.+++|+|++|||||||++.|...   ..|
T Consensus        40 ~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G  119 (312)
T 3aez_A           40 LGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDH  119 (312)
T ss_dssp             TTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred             CCCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence            3557899999999964210                   0      1 122238999999999999999999763   223


Q ss_pred             -CeEEEEecCCC
Q 024744           59 -KRIAVILNEFG   69 (263)
Q Consensus        59 -~~~~ii~~~~g   69 (263)
                       .+++++..+..
T Consensus       120 ~~~v~~v~qd~~  131 (312)
T 3aez_A          120 HPRVDLVTTDGF  131 (312)
T ss_dssp             CCCEEEEEGGGG
T ss_pred             CCeEEEEecCcc
Confidence             46888887743

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.32  E-value=9.1e-05  Score=60.33  Aligned_cols=24  Identities=42%  Similarity=0.488  Sum_probs=21.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKH   57 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~   57 (263)
                      +++|+|++|||||||++.|++..+
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g~~p   48 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLNEFP   48 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            689999999999999999986544

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.32  E-value=8.2e-05  Score=58.41  Aligned_cols=37  Identities=27%  Similarity=0.377  Sum_probs=27.5

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~   68 (263)
                      +++++|+|++|||||||++.|+..  ..|.+.+.+..+.
T Consensus         2 ~~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg   40 (171)
T 2f1r_A            2 SLILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA   40 (171)
T ss_dssp             -CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence            368999999999999999999865  2355567666553

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.31  E-value=5.5e-05  Score=69.85  Aligned_cols=47  Identities=19%  Similarity=0.196  Sum_probs=34.8

Q ss_pred             CCCCceEEEecceeEeCCcccCCCcce---E---EEEEEccCCCcHHHHHHHH
Q 024744            6 EDPPLAVRIDETTHEFSNSHENDDVSV---G---VTVITGFLGAGKSTLVNYI   52 (263)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---vv~i~G~~gaGKSTLin~l   52 (263)
                      +.+.++++.+++.+.+++.++++++++   +   +++|+|++|||||||++.+
T Consensus         7 ~~~~~~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A            7 TSPNNNSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             -------CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred             cCCCCCccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence            345667778888888888889887665   3   8999999999999999994

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.31  E-value=0.00012  Score=57.78  Aligned_cols=22  Identities=36%  Similarity=0.459  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++|+|++|||||||++.|.+
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            3789999999999999999985

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.30  E-value=9.3e-05  Score=59.21  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.5

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..+|+|+|++||||||+.+.|.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999974

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.29  E-value=0.00013  Score=58.82  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=21.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      .+++|+|++|||||||++.|+...
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHST
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhC
Confidence            488999999999999999998754

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.26  E-value=0.00021  Score=61.33  Aligned_cols=36  Identities=22%  Similarity=0.354  Sum_probs=29.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~   68 (263)
                      .+++|+|++|||||||++.|...  ..+.++.+...+.
T Consensus       103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~  140 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT  140 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence            48999999999999999999764  3467787776664

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.23  E-value=7.1e-05  Score=60.80  Aligned_cols=21  Identities=29%  Similarity=0.494  Sum_probs=20.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +++|+|++|||||||++.|+.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999999975

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.23  E-value=0.0002  Score=71.02  Aligned_cols=45  Identities=24%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             CCceEEEec-----ceeEe-CCcccCCCcce------------EEEEEEccCCCcHHHHHHHH
Q 024744            8 PPLAVRIDE-----TTHEF-SNSHENDDVSV------------GVTVITGFLGAGKSTLVNYI   52 (263)
Q Consensus         8 ~~~~~~~~~-----~~~~~-~~~~~~~~~~~------------~vv~i~G~~gaGKSTLin~l   52 (263)
                      ..+++++++     |++.| ++..++.++++            .+++|+|++|+|||||++.+
T Consensus       747 ~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i  809 (1022)
T 2o8b_B          747 TPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA  809 (1022)
T ss_dssp             SCCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH
T ss_pred             CCceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH
Confidence            356799999     99999 66667766543            48999999999999999998

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.22  E-value=0.00049  Score=58.81  Aligned_cols=55  Identities=24%  Similarity=0.303  Sum_probs=38.8

Q ss_pred             ecceeEeCCccc--C-CCcceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           15 DETTHEFSNSHE--N-DDVSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        15 ~~~~~~~~~~~~--~-~~~~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      +++.+.||+...  + -.....+++++|++|+||||+++.|...  ..+.++.++..++.
T Consensus        78 ~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~  137 (297)
T 1j8m_F           78 DELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY  137 (297)
T ss_dssp             HHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             HHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            345666765431  1 1122458889999999999999999754  34889999988864

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.21  E-value=0.00018  Score=64.38  Aligned_cols=23  Identities=30%  Similarity=0.366  Sum_probs=21.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|+|++|||||||+|.|++.
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCcHHHHHHHHhCC
Confidence            48999999999999999999863

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.20  E-value=0.00018  Score=57.48  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=20.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++|+|++|||||||++.|.+
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~~   51 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVAD   51 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999974

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.20  E-value=0.00023  Score=61.55  Aligned_cols=35  Identities=23%  Similarity=0.218  Sum_probs=27.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc----CCCCeEEEEecCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNEF   68 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~----~~~~~~~ii~~~~   68 (263)
                      +++|+|++|||||||++.|...    ..+.+++++..|.
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~  132 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG  132 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence            8999999999999999998653    1245677777763

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.19  E-value=0.00018  Score=57.22  Aligned_cols=23  Identities=39%  Similarity=0.518  Sum_probs=20.4

Q ss_pred             EEEEccCCCcHHHHHHHHHccCC
Q 024744           35 TVITGFLGAGKSTLVNYILNGKH   57 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~   57 (263)
                      |+|+||+|||||||+++|+...+
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            67999999999999999987644

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.19  E-value=0.00022  Score=61.07  Aligned_cols=36  Identities=22%  Similarity=0.430  Sum_probs=28.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~   68 (263)
                      .+++++|++|||||||++.|...  ..++++.+...+.
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~  138 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT  138 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence            38999999999999999999764  3466777766554

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.18  E-value=0.0002  Score=57.12  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHccC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      +++|+|++||||||+++.|.+..
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            78999999999999999998653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.17  E-value=0.00017  Score=55.94  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++|+|++||||||+.+.|.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~   26 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQ   26 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999975

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.16  E-value=0.00035  Score=56.01  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=26.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF   68 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~   68 (263)
                      .+++|+|++||||||+.+.|.+..+  .+.++..+.
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D~   55 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQDD   55 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCCc
Confidence            4899999999999999999984321  466776663

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.15  E-value=0.00013  Score=59.65  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=15.5

Q ss_pred             EEEEEccCCCcHHHHHHHHH-cc
Q 024744           34 VTVITGFLGAGKSTLVNYIL-NG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~-~~   55 (263)
                      +++|+|++|||||||++.|. +.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             EEEEECSCC----CHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHhcC
Confidence            89999999999999999999 64

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.15  E-value=0.00028  Score=63.64  Aligned_cols=26  Identities=31%  Similarity=0.520  Sum_probs=23.5

Q ss_pred             CcceEEEEEEccCCCcHHHHHHHHHc
Q 024744           29 DVSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        29 ~~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +..+.+|+|+|++++|||||+|.|++
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhh
Confidence            45677999999999999999999985

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.15  E-value=0.00021  Score=55.06  Aligned_cols=20  Identities=40%  Similarity=0.687  Sum_probs=18.8

Q ss_pred             EEEEEEccCCCcHHHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYI   52 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l   52 (263)
                      ++|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            47899999999999999999

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.14  E-value=2.3e-05  Score=71.11  Aligned_cols=46  Identities=15%  Similarity=0.052  Sum_probs=35.3

Q ss_pred             CceEEEecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++++++||+++|++...- -..=++++|+|++|||||||++.|++.
T Consensus       116 ~~mi~~~nl~~~y~~vsl~-i~~Ge~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          116 HTMKYIYNLHFMLEKIRMS-NFEGPRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CTHHHHHHHHHHHHHHHHH-SSSCCCEEEEESTTSSHHHHHHHHHHT
T ss_pred             cchhhhhhhhehhhcCceE-eCCCCEEEEECCCCCCHHHHHHHHhCc
Confidence            5689999999999742111 112258999999999999999999864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.14  E-value=0.00022  Score=55.02  Aligned_cols=22  Identities=18%  Similarity=0.107  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999974

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.11  E-value=0.00025  Score=63.75  Aligned_cols=44  Identities=18%  Similarity=0.232  Sum_probs=33.1

Q ss_pred             ceEEEecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .-++++|+ ++|++...+.-..-.+++|+|++|||||||+++|..
T Consensus         5 ~~l~~~~~-~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~   48 (430)
T 1w1w_A            5 VGLELSNF-KSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISF   48 (430)
T ss_dssp             EEEEEESC-SSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCE-EEECCceeEEecCCCEEEEECCCCCCHHHHHHHHHh
Confidence            35788899 788775433211235899999999999999999954

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.10  E-value=0.00025  Score=62.19  Aligned_cols=22  Identities=36%  Similarity=0.631  Sum_probs=20.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++|+|++|||||||+|.|+..
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcc
Confidence            7899999999999999999954

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.10  E-value=0.00026  Score=58.47  Aligned_cols=22  Identities=36%  Similarity=0.386  Sum_probs=20.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++|+|++|||||||++.|.+
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~   49 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQ   49 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999983

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.09  E-value=0.00033  Score=54.48  Aligned_cols=22  Identities=27%  Similarity=0.508  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++|+|++||||||+.+.|..
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~   30 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAH   30 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999999974

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.08  E-value=0.00027  Score=60.57  Aligned_cols=21  Identities=29%  Similarity=0.664  Sum_probs=20.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++|||||||+|.|+ .
T Consensus       167 i~~l~G~sG~GKSTLln~l~-~  187 (302)
T 2yv5_A          167 ICILAGPSGVGKSSILSRLT-G  187 (302)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-S
T ss_pred             EEEEECCCCCCHHHHHHHHH-H
Confidence            88999999999999999998 5

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.08  E-value=0.00027  Score=55.02  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+|+|+|++||||||+.+.|.+.
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999864

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.07  E-value=0.00024  Score=56.99  Aligned_cols=24  Identities=33%  Similarity=0.433  Sum_probs=21.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      .+++|+|++|||||||.+.|....
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            478999999999999999998654

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.07  E-value=0.00025  Score=56.56  Aligned_cols=21  Identities=33%  Similarity=0.455  Sum_probs=19.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +++|+|++|||||||++.|+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            578999999999999999975

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=97.04  E-value=0.0072  Score=57.72  Aligned_cols=24  Identities=25%  Similarity=0.216  Sum_probs=21.7

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++.-++|+|..++|||||..+|+.
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~   35 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLF   35 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHH
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHH
Confidence            567899999999999999999974

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.03  E-value=0.00039  Score=61.02  Aligned_cols=36  Identities=22%  Similarity=0.430  Sum_probs=28.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~   68 (263)
                      .+++|+|++|||||||++.|...  ..+.++.+...+.
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~  195 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT  195 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred             eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence            38999999999999999999764  3466777766554

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.01  E-value=0.00048  Score=55.11  Aligned_cols=35  Identities=29%  Similarity=0.338  Sum_probs=26.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccC--CCCeEEEEecC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGK--HGKRIAVILNE   67 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~--~~~~~~ii~~~   67 (263)
                      .+++|+|++|||||||++.|....  .+..+.+...+
T Consensus        23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d   59 (201)
T 1rz3_A           23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD   59 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence            589999999999999999997531  24455555444

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.01  E-value=0.00038  Score=55.72  Aligned_cols=22  Identities=32%  Similarity=0.537  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999974

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.98  E-value=0.00045  Score=62.93  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=28.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~   68 (263)
                      .+++|+|++|||||||++.|...  ..++++.+...+.
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~  331 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT  331 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred             eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence            38999999999999999999764  3466777665553

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.98  E-value=0.00042  Score=53.86  Aligned_cols=21  Identities=29%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +|+|.|+|||||||+.+.|.+
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHh
Confidence            789999999999999999985

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.97  E-value=0.00014  Score=62.41  Aligned_cols=21  Identities=48%  Similarity=0.604  Sum_probs=19.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +++|+|++|||||||+|.|+.
T Consensus       175 ~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          175 TTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHhcc
Confidence            899999999999999999984

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.97  E-value=0.00043  Score=55.98  Aligned_cols=35  Identities=20%  Similarity=0.284  Sum_probs=28.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~   68 (263)
                      +++|+|++|||||||++.|+..  ..+.++.++..+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~   61 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE   61 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence            8999999999999999999753  2356777777654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.97  E-value=0.00053  Score=55.13  Aligned_cols=34  Identities=29%  Similarity=0.258  Sum_probs=29.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF   68 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~   68 (263)
                      +++|+|++|+|||||++.++. ..+.++.++..+.
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~   55 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEG   55 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSC
T ss_pred             EEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCC
Confidence            899999999999999999987 5577777777665

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.97  E-value=0.00066  Score=57.58  Aligned_cols=35  Identities=31%  Similarity=0.337  Sum_probs=28.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc---CCCCeEEEEecCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEF   68 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~---~~~~~~~ii~~~~   68 (263)
                      +++|+|+||+|||||++.|+..   ..|.++.++..+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~   74 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE   74 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence            8999999999999999999764   2355777777664

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.96  E-value=0.00035  Score=59.73  Aligned_cols=22  Identities=41%  Similarity=0.735  Sum_probs=20.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++|++|||||||+|.|...
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTT
T ss_pred             eEEEECCCCCcHHHHHHHhccc
Confidence            8899999999999999999853

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.93  E-value=6.5e-05  Score=62.39  Aligned_cols=43  Identities=16%  Similarity=0.259  Sum_probs=29.9

Q ss_pred             EecceeEeCCcccCCCcceE---EEEEEccCCCcHHHHHHHHHccC
Q 024744           14 IDETTHEFSNSHENDDVSVG---VTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~---vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      ++++.+.|+....+.+.++.   -++|.|+||+|||||++.|....
T Consensus        28 l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           28 LKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             HHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            44556666655554433221   28899999999999999998653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.93  E-value=0.00065  Score=53.43  Aligned_cols=34  Identities=32%  Similarity=0.484  Sum_probs=25.0

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEE
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVI   64 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii   64 (263)
                      .-.+++|+|++||||||+.+.|...  ..+.++.++
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~   47 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL   47 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            3458899999999999999999753  234444444

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.90  E-value=0.0005  Score=55.69  Aligned_cols=22  Identities=41%  Similarity=0.492  Sum_probs=20.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++|+|++||||||+.+.|.+
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~   27 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAE   27 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999974

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.90  E-value=0.00053  Score=53.84  Aligned_cols=32  Identities=28%  Similarity=0.474  Sum_probs=24.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEE
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVI   64 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii   64 (263)
                      .+|+|.|++||||||+.+.|.+.  ..|..+..+
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~   35 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKII   35 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE
Confidence            47899999999999999999763  224445444

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.89  E-value=0.00053  Score=54.69  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +++|+|++||||||+.+.|.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999985

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.88  E-value=0.0005  Score=60.26  Aligned_cols=22  Identities=36%  Similarity=0.540  Sum_probs=20.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++|+|++|||||||++.|++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            8999999999999999999764

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.87  E-value=0.00091  Score=61.44  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=24.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHccC-CCCeEEEE
Q 024744           34 VTVITGFLGAGKSTLVNYILNGK-HGKRIAVI   64 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~-~~~~~~ii   64 (263)
                      .++|+|++|||||||++.|+... +..++..+
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giiti  293 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSI  293 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence            68999999999999999998763 33444333

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.87  E-value=7.9e-05  Score=62.84  Aligned_cols=42  Identities=17%  Similarity=0.243  Sum_probs=28.9

Q ss_pred             ecceeEeCCcccCCCcceE---EEEEEccCCCcHHHHHHHHHccC
Q 024744           15 DETTHEFSNSHENDDVSVG---VTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~---vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      +++.+.|+....+.+.++.   -++|.|++|+|||||++.|....
T Consensus        53 ~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           53 KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             HHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc
Confidence            4455556555444433221   28899999999999999998653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.85  E-value=0.0008  Score=53.58  Aligned_cols=31  Identities=26%  Similarity=0.269  Sum_probs=24.4

Q ss_pred             ccCCCcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           25 HENDDVSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        25 ~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.....+..+|+|+|++||||||+.+.|.+.
T Consensus         8 ~~~~~~~~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A            8 PAFSPDQVSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             CCSCTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            3334445568999999999999999999753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.84  E-value=0.00079  Score=57.74  Aligned_cols=38  Identities=21%  Similarity=0.254  Sum_probs=31.1

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      -.+++++|++||||||++..|...  ..+.++.++..|..
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~  143 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF  143 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence            358999999999999999999764  34788888887753

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.83  E-value=0.0006  Score=53.64  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=20.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999974

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.83  E-value=0.00089  Score=62.79  Aligned_cols=41  Identities=20%  Similarity=0.427  Sum_probs=32.2

Q ss_pred             ecceeEeCC-cccCCCcceE----------EEEEEccCCCcHHHHHHHHHcc
Q 024744           15 DETTHEFSN-SHENDDVSVG----------VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        15 ~~~~~~~~~-~~~~~~~~~~----------vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++++|++ ...+++.++.          +++|+|++|||||||++.|.+.
T Consensus       350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl  401 (608)
T 3j16_B          350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGA  401 (608)
T ss_dssp             SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTS
T ss_pred             cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcC
Confidence            667888876 3456665443          5899999999999999999864

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.82  E-value=9e-05  Score=64.34  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=33.9

Q ss_pred             eEEEecceeEeCCcccCCCc------------ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDV------------SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~------------~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++.++++..||..+++...            ....++|.|+||+|||||++.+.+.
T Consensus        18 ~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           18 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             HcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            45667888888876544332            2257899999999999999999753

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.82  E-value=0.00067  Score=54.10  Aligned_cols=21  Identities=38%  Similarity=0.627  Sum_probs=19.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +++|+|++||||||+.+.|.+
T Consensus        27 ~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           27 RIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            789999999999999999974

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.82  E-value=0.00059  Score=53.54  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++|+|++||||||+.+.|.+
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999975

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.81  E-value=0.00058  Score=53.36  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..+.++|+|++||||||+.+.|..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~   33 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELAS   33 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHH
Confidence            345788999999999999999974

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.81  E-value=0.00081  Score=59.02  Aligned_cols=22  Identities=36%  Similarity=0.644  Sum_probs=20.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++|+|++|||||||++.|+..
T Consensus       177 ~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            8999999999999999999976

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.81  E-value=4.8e-05  Score=62.55  Aligned_cols=44  Identities=25%  Similarity=0.205  Sum_probs=33.2

Q ss_pred             CCceEEEecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHc
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+..++++++...|+.  .++ +.-.+++|+|++|||||||+++|..
T Consensus         6 k~~~l~l~~~~~~~~~--~~~-~~~~~~~i~GpnGsGKSTll~~i~g   49 (227)
T 1qhl_A            6 KFRSLTLINWNGFFAR--TFD-LDELVTTLSGGNGAGKSTTMAAFVT   49 (227)
T ss_dssp             EEEEEEEEEETTEEEE--EEC-HHHHHHHHHSCCSHHHHHHHHHHHH
T ss_pred             eeeEEEEEeeecccCC--EEE-EcCcEEEEECCCCCCHHHHHHHHhc
Confidence            3567899999888865  111 1114788999999999999999974

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.80  E-value=0.00082  Score=51.27  Aligned_cols=25  Identities=28%  Similarity=0.230  Sum_probs=21.3

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .-..++|+|++|+|||||++.+...
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3347889999999999999999853

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.79  E-value=0.00093  Score=57.92  Aligned_cols=22  Identities=27%  Similarity=0.449  Sum_probs=20.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++|+|++|||||||++.|+..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999875

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.78  E-value=0.00071  Score=56.24  Aligned_cols=22  Identities=36%  Similarity=0.483  Sum_probs=20.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++|+|++||||||+.+.|.+
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~   49 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAE   49 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999973

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.76  E-value=0.00088  Score=56.87  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=21.5

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      -.+++|+|+|||||||+.+.|....
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3478999999999999999998643

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.75  E-value=0.00063  Score=53.20  Aligned_cols=22  Identities=27%  Similarity=0.280  Sum_probs=20.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..++|.|++|+|||||++.+.+
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999974

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.74  E-value=0.00083  Score=52.60  Aligned_cols=21  Identities=29%  Similarity=0.398  Sum_probs=19.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +++++|++||||||+.+.|.+
T Consensus         6 ~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            6 AVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999974

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.73  E-value=0.00085  Score=53.20  Aligned_cols=22  Identities=41%  Similarity=0.451  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +|+|.|++||||||+.+.|.+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            5889999999999999999753

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.72  E-value=0.00078  Score=57.47  Aligned_cols=56  Identities=13%  Similarity=0.168  Sum_probs=40.9

Q ss_pred             EEecceeEeCCcccCCCc---ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744           13 RIDETTHEFSNSHENDDV---SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (263)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~---~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~   70 (263)
                      ..+++++.|+...  ++.   .-.+++++|++|+||||++..|...  ..+.++.++..+...
T Consensus        78 ~~~~l~~~~~~~~--~~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~  138 (295)
T 1ls1_A           78 VYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (295)
T ss_dssp             HHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             HHHHHHHHHCCCC--ceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence            4566777886542  222   2348889999999999999999754  347889888887653

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.72  E-value=0.0049  Score=53.92  Aligned_cols=89  Identities=19%  Similarity=0.191  Sum_probs=50.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ++.|.|+||+|||||+..++..  ..+.++.++..+......    ....-  +....++.-..     ....++....+
T Consensus        63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~----ra~rl--gv~~~~l~i~~-----~~~~e~~l~~~  131 (356)
T 3hr8_A           63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV----YAKNL--GVDLKSLLISQ-----PDHGEQALEIV  131 (356)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH----HHHHH--TCCGGGCEEEC-----CSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH----HHHHc--CCchhhhhhhh-----ccCHHHHHHHH
Confidence            8999999999999999998764  346777787766432111    11100  00000111110     11123344445


Q ss_pred             HHHHHhccCCcEEEEcccCCCCc
Q 024744          112 EQLVQRKERLDHILLETTGLANP  134 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p  134 (263)
                      ..++. ...+|+++|+.....-+
T Consensus       132 ~~l~~-~~~~dlvVIDSi~~l~~  153 (356)
T 3hr8_A          132 DELVR-SGVVDLIVVDSVAALVP  153 (356)
T ss_dssp             HHHHH-TSCCSEEEEECTTTCCC
T ss_pred             HHHhh-hcCCCeEEehHhhhhcC
Confidence            55543 36789999987765554

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.72  E-value=0.00078  Score=59.41  Aligned_cols=23  Identities=35%  Similarity=0.609  Sum_probs=21.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++|+|++|||||||++.|+..
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            38999999999999999999864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.72  E-value=0.0013  Score=53.83  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=21.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++|.|++|||||||++.|.+.
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            48999999999999999999865

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.71  E-value=0.00073  Score=59.46  Aligned_cols=22  Identities=36%  Similarity=0.457  Sum_probs=19.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++|+|+||||||||+|+|++.
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~   24 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRA   24 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999853

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.71  E-value=0.00047  Score=55.27  Aligned_cols=32  Identities=34%  Similarity=0.510  Sum_probs=23.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHccC--CCCeEEEEe
Q 024744           34 VTVITGFLGAGKSTLVNYILNGK--HGKRIAVIL   65 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~--~~~~~~ii~   65 (263)
                      +|+|.|++||||||+++.|....  .+.++.++.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~   35 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA   35 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            68999999999999999997542  244444443

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.70  E-value=0.0009  Score=52.67  Aligned_cols=22  Identities=32%  Similarity=0.443  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..++|+|++||||||+.+.|..
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999975

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.68  E-value=0.0011  Score=50.51  Aligned_cols=23  Identities=43%  Similarity=0.719  Sum_probs=20.4

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~   53 (263)
                      .-++.+|+|++||||||++.+|.
T Consensus        22 ~~g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           22 KEGINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHH
Confidence            34589999999999999999985

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.68  E-value=0.0011  Score=52.90  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=20.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+|+|.|++||||||+.+.|.+.
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            47899999999999999999764

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.67  E-value=0.00097  Score=52.22  Aligned_cols=23  Identities=22%  Similarity=0.469  Sum_probs=20.3

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+.++++|++||||||+.+.|.+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35788999999999999999974

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.66  E-value=0.0017  Score=51.52  Aligned_cols=29  Identities=24%  Similarity=0.337  Sum_probs=23.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeE
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRI   61 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~   61 (263)
                      .+|+|+|++||||||+.+.|.+...|.++
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~   33 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMESIPANTI   33 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTSCGGGE
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHCCCce
Confidence            37899999999999999999865433333

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.66  E-value=0.0013  Score=51.55  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+|+|+|++||||||+.+.|.+
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999999974

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.66  E-value=0.0011  Score=52.11  Aligned_cols=22  Identities=36%  Similarity=0.375  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+|+|+|++||||||+.+.|.+
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999874

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.64  E-value=0.001  Score=51.92  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=19.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++|+|++||||||+.+.|..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999999974

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.63  E-value=0.00054  Score=62.33  Aligned_cols=22  Identities=41%  Similarity=0.410  Sum_probs=20.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++|+|++|||||||++.|..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            5899999999999999999975

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.60  E-value=0.00069  Score=58.41  Aligned_cols=40  Identities=28%  Similarity=0.332  Sum_probs=28.7

Q ss_pred             EEEecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHH
Q 024744           12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~   53 (263)
                      ++++| -++|++...+ .+.-++.+|+|++|||||||+.+|.
T Consensus         6 L~i~n-fr~~~~~~~l-~~~~g~~~i~G~NGsGKS~ll~ai~   45 (322)
T 1e69_A            6 LYLKG-FKSFGRPSLI-GFSDRVTAIVGPNGSGKSNIIDAIK   45 (322)
T ss_dssp             EEEES-BTTBCSCEEE-ECCSSEEEEECCTTTCSTHHHHHHH
T ss_pred             EEEeC-ceeecCCeEE-ecCCCcEEEECCCCCcHHHHHHHHH
Confidence            56777 4667443222 1233489999999999999999996

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.58  E-value=0.0012  Score=55.07  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.1

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++|+|+|+|||||||+.+.|...
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHH
Confidence            358999999999999999999753

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.58  E-value=0.0011  Score=58.29  Aligned_cols=21  Identities=52%  Similarity=0.724  Sum_probs=19.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~   53 (263)
                      ++++|+|++|||||||+++|.
T Consensus        24 g~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           24 GITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            478899999999999999986

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.56  E-value=0.0012  Score=52.75  Aligned_cols=23  Identities=26%  Similarity=0.315  Sum_probs=20.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+|+|+|++||||||+.+.|.+.
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            37999999999999999999753

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.56  E-value=0.0013  Score=54.66  Aligned_cols=23  Identities=22%  Similarity=0.205  Sum_probs=20.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++|+|++|||||||.+.|.+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhc
Confidence            47899999999999999999753

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.56  E-value=0.0012  Score=51.76  Aligned_cols=22  Identities=23%  Similarity=0.368  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++|+|++||||||+.+.|.+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.55  E-value=0.0017  Score=53.10  Aligned_cols=36  Identities=22%  Similarity=0.366  Sum_probs=25.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCC-CCeEEEEecCCC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKH-GKRIAVILNEFG   69 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~-~~~~~ii~~~~g   69 (263)
                      .+++|.|++||||||+++.|.+... +..+ +....++
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~-~~~~~p~   63 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYHRLVKDYDV-IMTREPG   63 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCE-EEECTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHhcCCCc-eeecCCC
Confidence            4789999999999999999976422 4444 3344444

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=96.54  E-value=0.05  Score=42.78  Aligned_cols=84  Identities=18%  Similarity=0.163  Sum_probs=49.1

Q ss_pred             EEEEEE-ccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHH
Q 024744           33 GVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQ  109 (263)
Q Consensus        33 ~vv~i~-G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~  109 (263)
                      ++++|+ +..|+||||+.-.|...  ..|.++.++..|+......   ........   ..++..        ....+..
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~---~~~~~~~~---~~~~~~--------~~~~l~~   67 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTN---WSKAGKAA---FDVFTA--------ASEKDVY   67 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH---HHTTSCCS---SEEEEC--------CSHHHHH
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHH---HHhcCCCC---CcEEec--------CcHHHHH
Confidence            456666 68899999999888543  4589999999987642211   11111111   012221        1234444


Q ss_pred             HHHHHHHhccCCcEEEEcccCCCC
Q 024744          110 ALEQLVQRKERLDHILLETTGLAN  133 (263)
Q Consensus       110 ~l~~~~~~~~~~d~ilie~~G~~~  133 (263)
                      .+..+   ...+|+|++++.+...
T Consensus        68 ~l~~l---~~~yD~viiD~~~~~~   88 (206)
T 4dzz_A           68 GIRKD---LADYDFAIVDGAGSLS   88 (206)
T ss_dssp             THHHH---TTTSSEEEEECCSSSS
T ss_pred             HHHHh---cCCCCEEEEECCCCCC
Confidence            44443   2468999999987654

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.52  E-value=0.0026  Score=51.81  Aligned_cols=35  Identities=17%  Similarity=0.132  Sum_probs=26.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--C------CCCeEEEEecCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--K------HGKRIAVILNEF   68 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~------~~~~~~ii~~~~   68 (263)
                      +++|+|++|||||||+..|+..  .      .+..+.++..+.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            8999999999999999999863  2      145566666554

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.52  E-value=0.0014  Score=55.82  Aligned_cols=25  Identities=28%  Similarity=0.192  Sum_probs=21.5

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...+|+|+|++|||||||.+.|...
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999998654

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.52  E-value=0.0019  Score=52.69  Aligned_cols=36  Identities=25%  Similarity=0.260  Sum_probs=28.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      +++|+|+||+|||||...++..  ..+.++.++..+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~   62 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH   62 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence            8999999999999998777543  34677878777643

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.51  E-value=0.0014  Score=51.54  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+|+|+|++||||||+.+.|.+
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999974

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.51  E-value=0.0013  Score=52.53  Aligned_cols=23  Identities=30%  Similarity=0.407  Sum_probs=20.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+|+|+|++||||||+.+.|.+.
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            37899999999999999999753

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=96.50  E-value=0.0014  Score=63.12  Aligned_cols=43  Identities=26%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             EEEecceeEe---CCcccCCCcce--EEEEEEccCCCcHHHHHHHHHc
Q 024744           12 VRIDETTHEF---SNSHENDDVSV--GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        12 ~~~~~~~~~~---~~~~~~~~~~~--~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +.+++..+..   ++..++++.++  .+++|+|++|||||||++.+..
T Consensus       551 i~i~~~rHP~le~~~~~vl~disl~g~i~~I~GpNGsGKSTlLr~iag  598 (765)
T 1ewq_A          551 LQIRAGRHPVVERRTEFVPNDLEMAHELVLITGPNMAGKSTFLRQTAL  598 (765)
T ss_dssp             EEEEEECCTTGGGTSCCCCEEEEESSCEEEEESCSSSSHHHHHHHHHH
T ss_pred             EEEEEeECceEccCCceEeeeccCCCcEEEEECCCCCChHHHHHHHHh
Confidence            4455443333   33444555555  4899999999999999999863

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.49  E-value=0.0014  Score=52.80  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+|+|+|++||||||+.+.|..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999974

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.49  E-value=0.0013  Score=57.76  Aligned_cols=23  Identities=35%  Similarity=0.304  Sum_probs=20.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..++|+|++|||||||++.|.+.
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999854

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.48  E-value=0.0013  Score=62.39  Aligned_cols=30  Identities=50%  Similarity=0.699  Sum_probs=25.1

Q ss_pred             cccCCCcceE-----EEEEEccCCCcHHHHHHHHH
Q 024744           24 SHENDDVSVG-----VTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        24 ~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~   53 (263)
                      ..++++.++.     +++|+|++|||||||++.++
T Consensus       335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            4678887665     79999999999999998653

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.47  E-value=0.0018  Score=51.32  Aligned_cols=24  Identities=33%  Similarity=0.376  Sum_probs=21.2

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+|+|+|++||||||+.+.|.+.
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            358999999999999999999864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.47  E-value=0.0018  Score=61.39  Aligned_cols=35  Identities=29%  Similarity=0.542  Sum_probs=25.8

Q ss_pred             ecceeEe---CCcccCCCcceE-----EEEEEccCCCcHHHHH
Q 024744           15 DETTHEF---SNSHENDDVSVG-----VTVITGFLGAGKSTLV   49 (263)
Q Consensus        15 ~~~~~~~---~~~~~~~~~~~~-----vv~i~G~~gaGKSTLi   49 (263)
                      +++++.|   ...++++++++.     +++|+|++|||||||+
T Consensus        19 ~~~~~~~~~~~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           19 SHMDKIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             ---CEEEEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             CCcceEEEcCCCccceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence            4455444   346788888776     7999999999999996

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.46  E-value=0.0016  Score=51.34  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+|+|+|++||||||+.+.|.+
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999975

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.45  E-value=0.0016  Score=52.37  Aligned_cols=21  Identities=38%  Similarity=0.575  Sum_probs=18.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .|+|+|++||||||+.+.|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999999964

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=96.45  E-value=0.0027  Score=55.82  Aligned_cols=59  Identities=15%  Similarity=0.165  Sum_probs=36.4

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      ++.++|+||+|+++...   ..+.+.+.++......        ......++.+||++|.|+++|.+.+.
T Consensus        97 ~p~ilV~NK~DL~~~~~---~~~~~~~~l~~~~~~~--------g~~~~~v~~iSA~~g~gi~~L~~~l~  155 (368)
T 3h2y_A           97 NKVLLVGNKADLIPKSV---KHDKVKHWMRYSAKQL--------GLKPEDVFLISAAKGQGIAELADAIE  155 (368)
T ss_dssp             SCEEEEEECGGGSCTTS---CHHHHHHHHHHHHHHT--------TCCCSEEEECCTTTCTTHHHHHHHHH
T ss_pred             CcEEEEEEChhcCCccc---CHHHHHHHHHHHHHHc--------CCCcccEEEEeCCCCcCHHHHHhhhh
Confidence            45899999999987542   1233333333211100        00112577899999999999988875

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.43  E-value=0.0012  Score=51.71  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++|+|+|++||||||+-+.|.+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999864

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.43  E-value=0.0017  Score=50.50  Aligned_cols=22  Identities=41%  Similarity=0.653  Sum_probs=19.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +.++|+|++||||||+.+.|.+
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            3688999999999999999974

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.40  E-value=0.0018  Score=49.70  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=19.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .|+|+|++||||||+.+.|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999974

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.40  E-value=0.0018  Score=51.52  Aligned_cols=21  Identities=29%  Similarity=0.322  Sum_probs=19.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +|+|+|++||||||+.+.|.+
T Consensus        22 ~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           22 RVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            789999999999999999975

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.39  E-value=0.0011  Score=51.63  Aligned_cols=23  Identities=22%  Similarity=0.352  Sum_probs=16.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+|+|+|++||||||+.+.|.+.
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999753

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.39  E-value=0.0019  Score=52.52  Aligned_cols=23  Identities=35%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+|+|.|++||||||+.+.|.+.
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.38  E-value=0.0032  Score=54.03  Aligned_cols=34  Identities=18%  Similarity=0.161  Sum_probs=26.6

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~   67 (263)
                      +.++++|+||+|||||||...|.....   ..+|+.|
T Consensus         2 ~~~~i~i~GptgsGKt~la~~La~~~~---~~iis~D   35 (322)
T 3exa_A            2 KEKLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGD   35 (322)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHTTT---EEEEECC
T ss_pred             CCcEEEEECCCcCCHHHHHHHHHHhCc---cceeecC
Confidence            346899999999999999999986543   2456655

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.38  E-value=0.0017  Score=54.70  Aligned_cols=21  Identities=29%  Similarity=0.483  Sum_probs=19.6

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++.|+||+|||||++.|.+.
T Consensus        47 vlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            899999999999999999864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.37  E-value=0.0016  Score=50.31  Aligned_cols=22  Identities=18%  Similarity=0.241  Sum_probs=19.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+|+|+|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999974

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.36  E-value=0.0019  Score=51.90  Aligned_cols=21  Identities=38%  Similarity=0.510  Sum_probs=18.9

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      |+|+|++||||||+.+.|.+.
T Consensus         3 I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            3 LVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999753

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.34  E-value=0.0027  Score=53.75  Aligned_cols=51  Identities=10%  Similarity=0.206  Sum_probs=34.3

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      ++.++|+||+|+++.+    ..+.+.+.++..              +. +++.+||.+|.|+++|.+.+.
T Consensus        51 kp~ilVlNK~DL~~~~----~~~~~~~~~~~~--------------g~-~~i~iSA~~~~gi~~L~~~i~  101 (282)
T 1puj_A           51 KPRIMLLNKADKADAA----VTQQWKEHFENQ--------------GI-RSLSINSVNGQGLNQIVPASK  101 (282)
T ss_dssp             SCEEEEEECGGGSCHH----HHHHHHHHHHTT--------------TC-CEEECCTTTCTTGGGHHHHHH
T ss_pred             CCEEEEEECcccCCHH----HHHHHHHHHHhc--------------CC-cEEEEECCCcccHHHHHHHHH
Confidence            4589999999998742    233333333321              11 467799999999998877654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.32  E-value=0.0027  Score=50.60  Aligned_cols=25  Identities=36%  Similarity=0.424  Sum_probs=21.6

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHc
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .-..+++|+|.+||||||+.+.|.+
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~~   34 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILKN   34 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999999974

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.31  E-value=0.0021  Score=51.59  Aligned_cols=23  Identities=30%  Similarity=0.254  Sum_probs=20.4

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      -.+++|+|++||||||+.+.|.+
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~   47 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEH   47 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35889999999999999999974

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.29  E-value=0.0023  Score=49.27  Aligned_cols=23  Identities=35%  Similarity=0.551  Sum_probs=20.1

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +.+++|+|++||||||+-+.|.+
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.29  E-value=0.0021  Score=59.23  Aligned_cols=56  Identities=16%  Similarity=0.181  Sum_probs=36.4

Q ss_pred             eEEEecceeEeCC-cccCCCcceE---EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 024744           11 AVRIDETTHEFSN-SHENDDVSVG---VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE   67 (263)
Q Consensus        11 ~~~~~~~~~~~~~-~~~~~~~~~~---vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~   67 (263)
                      .+++++++..|.. ..++.+ .++   +++|+|++|+|||||++.++..  ..|.++..+..+
T Consensus       257 ~~~~~~l~~g~~~ld~vL~g-~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e  318 (525)
T 1tf7_A          257 RSSNVRVSSGVVRLDEMCGG-GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE  318 (525)
T ss_dssp             CCCCCEECCSCHHHHHHTTS-SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             ccccceeecChHHHHHHhCC-CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            3455666655544 233333 444   8999999999999999999754  335555444443

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.28  E-value=0.0024  Score=51.61  Aligned_cols=22  Identities=32%  Similarity=0.289  Sum_probs=19.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..|+|+|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999975

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.27  E-value=0.0019  Score=52.25  Aligned_cols=22  Identities=27%  Similarity=0.289  Sum_probs=19.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..|+|.|++||||||+.+.|.+
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999975

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.24  E-value=0.0036  Score=54.82  Aligned_cols=21  Identities=48%  Similarity=0.564  Sum_probs=19.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~   53 (263)
                      ++++|+|++|+|||||+++|.
T Consensus        27 g~~~i~G~nG~GKttll~ai~   47 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAY   47 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHH
Confidence            389999999999999999996

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.23  E-value=0.0026  Score=51.68  Aligned_cols=21  Identities=33%  Similarity=0.368  Sum_probs=19.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .++|.|++||||||+.+.|.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999999975

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.23  E-value=0.0016  Score=53.99  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=20.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++|+|||||||+.+.|...
T Consensus        33 ~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           33 IAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             EEEEEESCGGGTTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.23  E-value=0.0047  Score=54.30  Aligned_cols=60  Identities=12%  Similarity=0.085  Sum_probs=37.6

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .+.++|+||+|+++.+.   ..+.+.+.++......        ......++.+||++|.|+++|.+.+..
T Consensus        99 ~piilV~NK~DLl~~~~---~~~~~~~~l~~~~~~~--------g~~~~~v~~iSA~~g~gi~~L~~~I~~  158 (369)
T 3ec1_A           99 NPILLVGNKADLLPRSV---KYPKLLRWMRRMAEEL--------GLCPVDVCLVSAAKGIGMAKVMEAINR  158 (369)
T ss_dssp             SCEEEEEECGGGSCTTC---CHHHHHHHHHHHHHTT--------TCCCSEEEECBTTTTBTHHHHHHHHHH
T ss_pred             CCEEEEEEChhcCCCcc---CHHHHHHHHHHHHHHc--------CCCcccEEEEECCCCCCHHHHHHHHHh
Confidence            45889999999987642   1233444433221111        001235788999999999999887753

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=96.22  E-value=0.0036  Score=49.42  Aligned_cols=36  Identities=31%  Similarity=0.310  Sum_probs=26.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~   68 (263)
                      .+++++|++|+||||++-+++..  ..+.++.++.+..
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~   41 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI   41 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence            37889999999999998666543  2467777776654

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.21  E-value=0.0028  Score=50.83  Aligned_cols=23  Identities=43%  Similarity=0.719  Sum_probs=20.4

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~   53 (263)
                      .-++.+|+|++||||||++.+|.
T Consensus        22 ~~~~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           22 KEGINLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHH
Confidence            34699999999999999999984

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.21  E-value=0.0027  Score=52.54  Aligned_cols=24  Identities=21%  Similarity=0.235  Sum_probs=20.9

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +..+|+|+|++||||||+-+.|..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999999865

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.20  E-value=0.0025  Score=50.63  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=20.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++++|+|++||||||+.+.|.+
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~   24 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAA   24 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999999974

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.15  E-value=0.003  Score=52.12  Aligned_cols=22  Identities=27%  Similarity=0.341  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..|+|+|+|||||||+.+.|.+
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999974

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.13  E-value=0.0038  Score=50.75  Aligned_cols=24  Identities=25%  Similarity=0.360  Sum_probs=21.0

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +.++|+|.|+|||||+|.-..|.+
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            445889999999999999999975

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.13  E-value=0.0031  Score=50.67  Aligned_cols=20  Identities=30%  Similarity=0.498  Sum_probs=18.5

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      |+|+|++||||||+.+.|.+
T Consensus         3 I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            3 IILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999975

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.11  E-value=0.0026  Score=62.29  Aligned_cols=39  Identities=38%  Similarity=0.508  Sum_probs=31.8

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHH
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~   53 (263)
                      +.+++++++.     ..++++++.     +++|+|.+|||||||++.|+
T Consensus       628 ~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          628 RWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             CEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             eEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            6788988863     357776554     89999999999999999864

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.11  E-value=0.0031  Score=52.97  Aligned_cols=21  Identities=33%  Similarity=0.295  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +++|+|++|+|||||+..++.
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            899999999999999999874

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.07  E-value=0.0011  Score=58.91  Aligned_cols=31  Identities=29%  Similarity=0.340  Sum_probs=23.4

Q ss_pred             CcccCCCcceE----EEEEEccCCCcHHHHHHHHH
Q 024744           23 NSHENDDVSVG----VTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        23 ~~~~~~~~~~~----vv~i~G~~gaGKSTLin~l~   53 (263)
                      +...+++.++.    +++|+|++|||||||++.|.
T Consensus        47 nf~~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~   81 (415)
T 4aby_A           47 NLATITQLELELGGGFCAFTGETGAGKSIIVDALG   81 (415)
T ss_dssp             EETTEEEEEEECCSSEEEEEESHHHHHHHHTHHHH
T ss_pred             cccceeeEEEecCCCcEEEECCCCCCHHHHHHHHH
Confidence            33444444332    89999999999999999983

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.06  E-value=0.0033  Score=55.47  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHccC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      +++|+|++|+|||||++.|.+..
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            89999999999999999998643

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.06  E-value=0.0036  Score=51.47  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++|+|++||||||+.+.|.+
T Consensus        10 ~~i~i~G~~GsGKsTla~~la~   31 (233)
T 3r20_A           10 LVVAVDGPAGTGKSSVSRGLAR   31 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999974

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.06  E-value=0.0032  Score=53.13  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=20.1

Q ss_pred             eEEEEEEccCCCcHHHHHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~   53 (263)
                      ..+|+|+|++||||||+.+.|.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4489999999999999999997

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.06  E-value=0.0034  Score=53.14  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++|+|+|||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999985

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.04  E-value=0.0054  Score=48.59  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+.|.|++|+|||||++++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46789999999999999999754

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.02  E-value=0.0059  Score=52.96  Aligned_cols=32  Identities=22%  Similarity=0.193  Sum_probs=25.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~   67 (263)
                      ++++|+|++|||||||...|.....   ..+++.|
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~---~~iis~D   39 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN---GEIISGD   39 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT---EEEEECC
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC---Cceeccc
Confidence            4899999999999999999986432   3566655

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.00  E-value=0.0037  Score=50.42  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..|+|.|++||||||+.+.|.+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999999964

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=95.99  E-value=0.0059  Score=49.80  Aligned_cols=38  Identities=21%  Similarity=0.146  Sum_probs=29.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~   70 (263)
                      .+++++|++|+||||++-.++..  ..|.++.++.+..++
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~   52 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT   52 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc
Confidence            48899999999999988777543  357888888776654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=95.98  E-value=0.003  Score=61.23  Aligned_cols=39  Identities=36%  Similarity=0.532  Sum_probs=31.4

Q ss_pred             CCceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHH
Q 024744            8 PPLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNY   51 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~   51 (263)
                      +.+.++++++++     ..++++++.     +++|+|.+|||||||++.
T Consensus       499 ~~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~  542 (842)
T 2vf7_A          499 PAGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQ  542 (842)
T ss_dssp             CSCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSSHHHHCCC
T ss_pred             CCceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcCHHHHHHH
Confidence            456799999875     256665544     899999999999999996

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=95.97  E-value=0.0037  Score=54.21  Aligned_cols=23  Identities=43%  Similarity=0.719  Sum_probs=20.3

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~   53 (263)
                      +-++.+|+|++||||||++.+|.
T Consensus        22 ~~~~~~i~G~NGsGKS~lleAi~   44 (339)
T 3qkt_A           22 KEGINLIIGQNGSGKSSLLDAIL   44 (339)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHH
Confidence            44688999999999999999983

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.97  E-value=0.0048  Score=50.78  Aligned_cols=38  Identities=32%  Similarity=0.416  Sum_probs=27.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~   70 (263)
                      .+|+|.|++||||||+++.|.+.  ..+.++++...+++.
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~   67 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGG   67 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCC
Confidence            48999999999999999999654  235553455555554

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.94  E-value=0.0049  Score=55.07  Aligned_cols=24  Identities=46%  Similarity=0.581  Sum_probs=21.1

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ...+++++|+|||||||+.++|.+
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999999985

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.92  E-value=0.0072  Score=52.67  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=20.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++.|+|++|||||||++.++..
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            8999999999999999999764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.91  E-value=0.0043  Score=48.00  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+.|+|++|+|||||++.+...
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45789999999999999999753

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.91  E-value=0.023  Score=49.85  Aligned_cols=89  Identities=21%  Similarity=0.218  Sum_probs=50.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ++.|.|+||+|||||...++..  ..+.++.++..+...  ...  .....+  .-..++.-..+     ...+.+...+
T Consensus        76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~--~~~--~a~~~g--~d~~~l~i~~~-----~~~e~~l~~l  144 (366)
T 1xp8_A           76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL--DPV--YARALG--VNTDELLVSQP-----DNGEQALEIM  144 (366)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CHH--HHHHTT--CCGGGCEEECC-----SSHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh--hHH--HHHHcC--CCHHHceeecC-----CcHHHHHHHH
Confidence            8889999999999999888654  347788888887532  111  111100  00001110101     1113344455


Q ss_pred             HHHHHhccCCcEEEEcccCCCCc
Q 024744          112 EQLVQRKERLDHILLETTGLANP  134 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p  134 (263)
                      ..++. ...+++|+|+..+...+
T Consensus       145 ~~l~~-~~~~~lVVIDsl~~l~~  166 (366)
T 1xp8_A          145 ELLVR-SGAIDVVVVDSVAALTP  166 (366)
T ss_dssp             HHHHT-TTCCSEEEEECTTTCCC
T ss_pred             HHHHh-cCCCCEEEEeChHHhcc
Confidence            55543 36799999988886653

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.89  E-value=0.0048  Score=49.69  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=18.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +++|.|+|||||+|.-..|.+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477999999999999999975

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=95.84  E-value=0.005  Score=50.21  Aligned_cols=23  Identities=30%  Similarity=0.302  Sum_probs=20.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..|+|.|++||||||+.+.|.+.
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36889999999999999999753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.82  E-value=0.0034  Score=58.16  Aligned_cols=23  Identities=39%  Similarity=0.449  Sum_probs=20.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++|+|++|||||||++.|.+.
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCChHHHHHHHHHHh
Confidence            37899999999999999999753

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.82  E-value=0.0062  Score=49.15  Aligned_cols=35  Identities=17%  Similarity=0.165  Sum_probs=25.9

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEec
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILN   66 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~   66 (263)
                      .+.+.|.|++|+|||||++.+...  ..+.++..+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~   88 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL   88 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence            357889999999999999999764  23455555543

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.80  E-value=0.011  Score=47.68  Aligned_cols=38  Identities=29%  Similarity=0.359  Sum_probs=27.8

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~   70 (263)
                      -.+|+|.|++||||||+++.|.+.  ..|.++ +...+++.
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v-~~~~~p~~   45 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEV-QLTREPGG   45 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCE-EEEESSCS
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCc-ccccCCCC
Confidence            358899999999999999999664  335555 44455554

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.79  E-value=0.007  Score=48.98  Aligned_cols=38  Identities=37%  Similarity=0.445  Sum_probs=27.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~   70 (263)
                      .+|+|.|++||||||+++.|.+.  ..|.+..+...++|.
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~   43 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG   43 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCC
Confidence            47899999999999999999764  234422355566664

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.78  E-value=0.0088  Score=51.80  Aligned_cols=32  Identities=28%  Similarity=0.321  Sum_probs=25.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~   67 (263)
                      ++++|+||+|||||||...|.+...   ..+|+-|
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~l~---~eiIs~D   72 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAHFP---LEVINSD   72 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTTSC---EEEEECC
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHCC---CcEEccc
Confidence            5899999999999999999986432   2456655

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=95.78  E-value=0.0048  Score=59.65  Aligned_cols=32  Identities=22%  Similarity=0.208  Sum_probs=24.5

Q ss_pred             CcccCCCcce----EEEEEEccCCCcHHHHHHHHHc
Q 024744           23 NSHENDDVSV----GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        23 ~~~~~~~~~~----~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +..++.+.++    .+++|+|++|||||||++.+..
T Consensus       594 ~~~vlndisl~~~g~i~~ItGpNGsGKSTlLr~iag  629 (800)
T 1wb9_A          594 EPFIANPLNLSPQRRMLIITGPNMGGKSTYMRQTAL  629 (800)
T ss_dssp             SCCCCEEEEECSSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeeecccccCCCcEEEEECCCCCChHHHHHHHHH
Confidence            3444555444    3899999999999999999863

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.76  E-value=0.026  Score=49.29  Aligned_cols=89  Identities=18%  Similarity=0.251  Sum_probs=49.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ++.|.|+||+|||||...++..  ..+.++.++..+...  .  ......-  +.-..++.-..+     ...+.+.+.+
T Consensus        65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~--~--~~~a~~~--g~~~~~l~i~~~-----~~~e~~~~~~  133 (356)
T 1u94_A           65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL--D--PIYARKL--GVDIDNLLCSQP-----DTGEQALEIC  133 (356)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C--HHHHHHT--TCCGGGCEEECC-----SSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc--c--HHHHHHc--CCChhheeeeCC-----CCHHHHHHHH
Confidence            8999999999999999888653  346788888876432  1  1111110  000011111101     1112334444


Q ss_pred             HHHHHhccCCcEEEEcccCCCCc
Q 024744          112 EQLVQRKERLDHILLETTGLANP  134 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p  134 (263)
                      ..+.. ...+++|+|+..+...+
T Consensus       134 ~~l~~-~~~~~lVVIDsl~~l~~  155 (356)
T 1u94_A          134 DALAR-SGAVDVIVVDSVAALTP  155 (356)
T ss_dssp             HHHHH-HTCCSEEEEECGGGCCC
T ss_pred             HHHHh-ccCCCEEEEcCHHHhcc
Confidence            44443 36799999988776554

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=95.76  E-value=0.13  Score=43.54  Aligned_cols=38  Identities=16%  Similarity=0.268  Sum_probs=30.0

Q ss_pred             ceEEEEEEcc-CCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744           31 SVGVTVITGF-LGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (263)
Q Consensus        31 ~~~vv~i~G~-~gaGKSTLin~l~~~--~~~~~~~ii~~~~   68 (263)
                      ...+++|+|. +|+||||+.-.|...  ..|+|+.+|..|+
T Consensus       103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~  143 (299)
T 3cio_A          103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL  143 (299)
T ss_dssp             SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            3457888885 899999998888543  4589999999886

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.75  E-value=0.0056  Score=52.23  Aligned_cols=54  Identities=24%  Similarity=0.397  Sum_probs=31.9

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      ++.++|+||+|+.+..+. ...+.+.+..+..+  .             +++.+||++|.|+++|...+.
T Consensus       111 ~~~ilV~NK~DL~~~~~v-~~~~~~~~~~~~~g--~-------------~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          111 VEPVIVFNKIDLLNEEEK-KELERWISIYRDAG--Y-------------DVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEEEECCGGGCCHHHH-HHHHHHHHHHHHTT--C-------------EEEECCTTTCTTHHHHHHHTT
T ss_pred             CCEEEEEEcccCCCcccc-HHHHHHHHHHHHCC--C-------------eEEEEECCCCCCHHHHHhhcc
Confidence            458999999999865210 00233333333321  2             356778888888777776654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.74  E-value=0.0058  Score=49.93  Aligned_cols=22  Identities=32%  Similarity=0.315  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+++|+|++||||||+.+.|.+
T Consensus        17 ~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           17 IQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4789999999999999999974

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.73  E-value=0.01  Score=47.52  Aligned_cols=30  Identities=30%  Similarity=0.413  Sum_probs=23.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~   67 (263)
                      .++|+|++|+|||||...|...  +.  .+++.|
T Consensus        36 ~ilI~GpsGsGKStLA~~La~~--g~--~iIsdD   65 (205)
T 2qmh_A           36 GVLITGDSGVGKSETALELVQR--GH--RLIADD   65 (205)
T ss_dssp             EEEEECCCTTTTHHHHHHHHTT--TC--EEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh--CC--eEEecc
Confidence            5889999999999999999854  22  455555

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=95.72  E-value=0.0067  Score=59.55  Aligned_cols=19  Identities=37%  Similarity=0.384  Sum_probs=18.5

Q ss_pred             EEEEEccCCCcHHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYI   52 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l   52 (263)
                      +++|+|++|||||||++.+
T Consensus       664 i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          664 FHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            8999999999999999998

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.69  E-value=0.0089  Score=51.16  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=25.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~   67 (263)
                      ++++|+||+|||||||...|.+...   ..+++.|
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~~~---~~iis~D   42 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKILP---VELISVD   42 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC---EEEEECC
T ss_pred             cEEEEECCCccCHHHHHHHHHHhCC---CcEEecc
Confidence            5789999999999999999986532   2456654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.66  E-value=0.0059  Score=50.42  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -+.|.|+||+|||||.+++...
T Consensus        47 ~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHH
Confidence            4789999999999999999754

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.63  E-value=0.0064  Score=49.61  Aligned_cols=40  Identities=23%  Similarity=0.258  Sum_probs=29.2

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc--C-CCCeEEEEecCCCc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG--K-HGKRIAVILNEFGE   70 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~--~-~~~~~~ii~~~~g~   70 (263)
                      +-.+|++.|.+||||||+.+.|.+.  . .|.++.++..+|+.
T Consensus        20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~   62 (223)
T 3ld9_A           20 GSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG   62 (223)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence            3458999999999999999999753  2 35556553556654

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.61  E-value=0.0029  Score=53.73  Aligned_cols=35  Identities=26%  Similarity=0.321  Sum_probs=23.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE   67 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~   67 (263)
                      .+|+|+|++||||||+.+.|.+.  ..+.++.++..|
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D   42 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGD   42 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecc
Confidence            58999999999999999999753  123446666655

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=95.61  E-value=0.0043  Score=60.72  Aligned_cols=30  Identities=23%  Similarity=0.325  Sum_probs=23.3

Q ss_pred             cccCCCcceE-----EEEEEccCCCcHHHHHHHHH
Q 024744           24 SHENDDVSVG-----VTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        24 ~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~   53 (263)
                      ..+..++++.     +++|+||+|||||||++.+.
T Consensus       660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~  694 (918)
T 3thx_B          660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVA  694 (918)
T ss_dssp             SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred             ceecccccccCCCCeEEEEECCCCCchHHHHHHHH
Confidence            3444454442     89999999999999999874

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.55  E-value=0.01  Score=51.18  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|+|++|||||||-..|.+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999864

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.55  E-value=0.0087  Score=49.99  Aligned_cols=51  Identities=16%  Similarity=0.145  Sum_probs=33.0

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ++.++|+||+|+++.+    ..+.+.+.++..  +.             ++ .+||.+|.|+++|.+.+..
T Consensus        47 k~~iivlNK~DL~~~~----~~~~~~~~~~~~--g~-------------~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           47 KETIILLNKVDIADEK----TTKKWVEFFKKQ--GK-------------RV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             SEEEEEEECGGGSCHH----HHHHHHHHHHHT--TC-------------CE-EECCTTSCHHHHHHHHCCC
T ss_pred             CCcEEEEECccCCCHH----HHHHHHHHHHHc--CC-------------eE-EEECCCCcCHHHHHHHHHH
Confidence            5589999999999753    233444444332  11             24 6788888888877766544

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.53  E-value=0.011  Score=52.15  Aligned_cols=37  Identities=30%  Similarity=0.289  Sum_probs=27.7

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE   67 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~   67 (263)
                      .-+.++|+|++|||||||++.|+..  ..+.++.++..+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~   72 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE   72 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3457889999999999999999764  346666665443

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.53  E-value=0.0026  Score=58.21  Aligned_cols=42  Identities=17%  Similarity=0.243  Sum_probs=29.0

Q ss_pred             ecceeEeCCcccCCCcceE---EEEEEccCCCcHHHHHHHHHccC
Q 024744           15 DETTHEFSNSHENDDVSVG---VTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~---vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      +++...|.+...+.+.+..   -++|.|+||+|||||+++|....
T Consensus        44 ~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           44 KEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             HHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             HHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            3444455555555543322   38899999999999999998653

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.49  E-value=0.01  Score=51.69  Aligned_cols=36  Identities=28%  Similarity=0.218  Sum_probs=29.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      ++.|.|+||+|||||...++..  ..+.++.++..+..
T Consensus        63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~  100 (349)
T 2zr9_A           63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA  100 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            8999999999999998888643  34778888887743

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.47  E-value=0.014  Score=49.96  Aligned_cols=36  Identities=14%  Similarity=0.165  Sum_probs=29.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      +++|+|+||+|||||...++..  ..+.++.+++.+..
T Consensus        70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s  107 (315)
T 3bh0_A           70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG  107 (315)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence            8999999999999999888643  34678888888754

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.45  E-value=0.0059  Score=52.77  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=20.9

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +.|.+.|.|++|+|||||++.+.+
T Consensus        35 ~~~~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           35 DLPHLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            445589999999999999999976

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.44  E-value=0.0087  Score=47.96  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.++|.|++|+|||||++.+.+.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            37889999999999999999753

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.44  E-value=0.011  Score=47.45  Aligned_cols=37  Identities=22%  Similarity=0.376  Sum_probs=26.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGE   70 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~   70 (263)
                      .+|+|-|..||||||+++.|.+. ..|.++ +...+||.
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v-~~~~eP~~   40 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDYDV-IMTREPGG   40 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTSCE-EEEESSTT
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCCCE-EEeeCCCC
Confidence            47889999999999999998654 234444 45556664

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.44  E-value=0.006  Score=47.08  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.+.|+|++|+|||||++.+...
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHH
Confidence            45689999999999999999753

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.44  E-value=0.0078  Score=52.46  Aligned_cols=23  Identities=17%  Similarity=0.225  Sum_probs=21.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      |.++|+|++|+|||||++.+...
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            58899999999999999999865

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.29  E-value=0.015  Score=50.34  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=31.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~   70 (263)
                      +++|+|+||+|||||...++..  ..+.++++++.+...
T Consensus        48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~   86 (338)
T 4a1f_A           48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSA   86 (338)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence            8999999999999999888653  357889999988653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.28  E-value=0.011  Score=50.40  Aligned_cols=53  Identities=19%  Similarity=0.332  Sum_probs=34.8

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      ++.+||+||+|+.+..    ..++..+..+..+..             .+++.+||++|.|++++..++.
T Consensus       116 ~piilv~NK~DL~~~~----~v~~~~~~~~~~~~~-------------~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          116 LETVMVINKMDLYDED----DLRKVRELEEIYSGL-------------YPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             CEEEEEECCGGGCCHH----HHHHHHHHHHHHTTT-------------SCEEECCTTTCTTHHHHHHHHS
T ss_pred             CCEEEEEeHHHcCCch----hHHHHHHHHHHHhhh-------------CcEEEEECCCCcCHHHHHHHhc
Confidence            4589999999998642    122233333333210             2467899999999998887765

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=95.27  E-value=0.0091  Score=52.38  Aligned_cols=23  Identities=30%  Similarity=0.570  Sum_probs=20.5

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~   53 (263)
                      +-++.+|+|++||||||++.+|.
T Consensus        24 ~~gl~vi~G~NGaGKT~ileAI~   46 (371)
T 3auy_A           24 EKGIVAIIGENGSGKSSIFEAVF   46 (371)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHH
Confidence            34799999999999999999984

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.26  E-value=0.013  Score=52.87  Aligned_cols=36  Identities=17%  Similarity=0.297  Sum_probs=30.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc---CCCCeEEEEecCCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFG   69 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~---~~~~~~~ii~~~~g   69 (263)
                      +++|+|+||+|||||+..++..   ..|.++.+++.+..
T Consensus       205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s  243 (454)
T 2r6a_A          205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS  243 (454)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            8999999999999999998664   23678888888754

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.26  E-value=0.012  Score=46.02  Aligned_cols=31  Identities=26%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF   68 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~   68 (263)
                      -++|+|++|+|||||.-.|+..  |.  .++.+|.
T Consensus        18 gvli~G~SGaGKStlal~L~~r--G~--~lvaDD~   48 (181)
T 3tqf_A           18 GVLITGEANIGKSELSLALIDR--GH--QLVCDDV   48 (181)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHT--TC--EEEESSE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc--CC--eEecCCE
Confidence            5779999999999999999863  32  3455553

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.21  E-value=0.011  Score=48.46  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      .+|+|.|.+||||||+.+.|.+..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHc
Confidence            368999999999999999998654

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.21  E-value=0.0072  Score=48.62  Aligned_cols=23  Identities=22%  Similarity=0.112  Sum_probs=20.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHccC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      .+++.||||+||||+..+|+...
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999997643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.17  E-value=0.0045  Score=53.02  Aligned_cols=16  Identities=25%  Similarity=0.615  Sum_probs=13.2

Q ss_pred             EeeEEEEecCCCCCCC
Q 024744          157 ITDVVILNKVDLVSPE  172 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~  172 (263)
                      ++.+||+||+||.++.
T Consensus       118 ~~~vivlnK~DL~~~~  133 (307)
T 1t9h_A          118 IQPIICITKMDLIEDQ  133 (307)
T ss_dssp             CEEEEEEECGGGCCCH
T ss_pred             CCEEEEEECCccCchh
Confidence            3479999999999763

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.15  E-value=0.011  Score=52.47  Aligned_cols=35  Identities=23%  Similarity=0.146  Sum_probs=25.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHc--cC------CCCeEEEEecCC
Q 024744           34 VTVITGFLGAGKSTLVNYILN--GK------HGKRIAVILNEF   68 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~--~~------~~~~~~ii~~~~   68 (263)
                      ++.|+|++|+|||||+..|+-  ..      .+.++.++..+.
T Consensus       180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            899999999999999997642  11      245566666553

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.15  E-value=0.017  Score=45.90  Aligned_cols=37  Identities=27%  Similarity=0.231  Sum_probs=28.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      .+.+++|+.||||||.+-.++..  ..|.++.++.+...
T Consensus         9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d   47 (191)
T 1xx6_A            9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID   47 (191)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence            48899999999999988777654  35888888875543

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.15  E-value=0.0086  Score=51.67  Aligned_cols=25  Identities=16%  Similarity=0.227  Sum_probs=21.4

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++|.+++.|++|+||||+++.+.+.
T Consensus        45 ~~~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           45 KLPHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            4455899999999999999999754

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.13  E-value=0.015  Score=50.70  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=20.6

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..+.++|+|++|+||||+.+.|..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            356788999999999999998864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.11  E-value=0.0076  Score=50.08  Aligned_cols=26  Identities=35%  Similarity=0.371  Sum_probs=22.2

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccC
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      +..+|+|.|.+||||||+.+.|.+..
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            34589999999999999999998654

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=95.07  E-value=0.16  Score=42.35  Aligned_cols=39  Identities=28%  Similarity=0.379  Sum_probs=30.5

Q ss_pred             ceEEEEEEc-cCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           31 SVGVTVITG-FLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        31 ~~~vv~i~G-~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      ...+++|+| .+|+||||+.-.|...  ..|+|+.+|..|+.
T Consensus        81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~  122 (271)
T 3bfv_A           81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR  122 (271)
T ss_dssp             CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            345788887 5899999999888543  45899999998864

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.04  E-value=0.014  Score=51.85  Aligned_cols=32  Identities=38%  Similarity=0.456  Sum_probs=25.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~   67 (263)
                      ++++|+|++|||||||...|.....+   .+++.|
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~~---~iis~D   34 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFNG---EVINSD   34 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHTE---EEEECC
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCCC---eEeecC
Confidence            58899999999999999999864322   456654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	263
d1nija1	222	c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-t	1e-32
d1yrba1	244	c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB09	1e-10
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	2e-07
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	7e-07
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	7e-04
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	0.004

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 222

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  116 bits (292), Expect = 1e-32
 Identities = 61/211 (28%), Positives = 98/211 (46%), Gaps = 40/211 (18%)

Query: 32  VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
           + VT++TGFLGAGK+TL+ +ILN +HG +IAVI NEFGE        +++   G    + 
Sbjct: 3   IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE------VSVDDQLIGDRATQI 56

Query: 92  VELANGCICCTVKHSLVQAL----EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQL 147
             L NGCICC+  + L  AL    + L +   + D +++E TG+A+P P+    +  + L
Sbjct: 57  KTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVL 116

Query: 148 ESAVRLDSIIT------------------------DVVILNKVDLVSPERSGDSLDELEK 183
                LD +I                         D ++L K D+          ++L +
Sbjct: 117 CQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVAGE------AEKLHE 170

Query: 184 EIHEINSLAHVIRSVRCQVDLSEVLNCRAYD 214
            +  IN+ A V       +DL  + N   + 
Sbjct: 171 RLARINARAPVYTVTHGDIDLGLLFNTNGFM 201

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} Length = 244

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 58.1 bits (139), Expect = 1e-10
 Identities = 34/200 (17%), Positives = 65/200 (32%), Gaps = 43/200 (21%)

Query: 34  VTVITGFLGAGKSTLVNYILNGKHGKRIAVILN-------EFGEEIGVERAMINEGEGGA 86
           + V  G  G+GK+TL                +N          E     R  +   E   
Sbjct: 2   IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEE--- 58

Query: 87  LVEEWVELANGCICCT--VKHSLVQALEQLVQRKERLDHILLETTG-------------L 131
           ++ E        +     +     + L ++++ ++  D++L++T G             L
Sbjct: 59  IMREGYGPNGAIVESYDRLMEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRL 118

Query: 132 ANPAPLASVLWLDDQ--------------LESAVRLDSIITDVVILNKVDLVSPERSGDS 177
               P   V+++ D                   + L    T +  LNKVDL+S E     
Sbjct: 119 MENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE---- 174

Query: 178 LDELEKEIHEINSLAHVIRS 197
            +   K   +I+ L   ++ 
Sbjct: 175 KERHRKYFEDIDYLTARLKL 194

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 13/132 (9%), Positives = 35/132 (26%), Gaps = 7/132 (5%)

Query: 34  VTVITGFLGAGKSTLVNYILN--GKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
           +     + G GK+TL+  ++      G R  +I +   +    +    +     A   + 
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63

Query: 92  VELANGCICCTVKHSLVQALEQLVQRKERL-----DHILLETTGLANPAPLASVLWLDDQ 146
           +  +        +    + L+                ++           +        +
Sbjct: 64  IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHR 123

Query: 147 LESAVRLDSIIT 158
            E  V    +I 
Sbjct: 124 PEELVIDRHVIA 135

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 46.0 bits (108), Expect = 7e-07
 Identities = 17/131 (12%), Positives = 43/131 (32%), Gaps = 5/131 (3%)

Query: 34  VTVITGFLGAGKSTLVNYILN--GKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEW 91
           V  + G+  +GK+TL+   +    + G R+  + +            ++           
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPARPEGVDSVRHERAGAVA 62

Query: 92  VELANGCICCTVKHSLVQALEQLVQRKERL--DHILLETTGLANPAPLASVLWLDDQLES 149
             +    +        +  L+ ++     L  D +L+E        P   ++  ++   S
Sbjct: 63  TAVEGDGLLQLHLRRPLWRLDDVLALYAPLRLDLVLVEGYKQE-RHPKVVLVRSEEDWAS 121

Query: 150 AVRLDSIITDV 160
              L +I   +
Sbjct: 122 LQHLANIRAVI 132

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 20/160 (12%), Positives = 45/160 (28%), Gaps = 28/160 (17%)

Query: 36  VITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEG------EGGALVE 89
           +  G   +GK+ L   +L G++      I +             +              +
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQ 63

Query: 90  EWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLES 149
                 +                ++    E L  +L+++  L N   L            
Sbjct: 64  LLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSL------------ 111

Query: 150 AVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN 189
                     ++  NK D+   + +     +LEKE++ + 
Sbjct: 112 ----------LIACNKQDIAMAKSAKLIQQQLEKELNTLR 141

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	99.97
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.72
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.7
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.65
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.65
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.65
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.6
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.58
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.57
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.57
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.55
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.55
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.55
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.53
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.52
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.38
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.38
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.25
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.25
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.24
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.23
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.21
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.21
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.19
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.18
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.17
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.17
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.16
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.16
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.14
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.09
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.08
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	99.06
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.04
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.02
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.02
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.01
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.0
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.99
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.99
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.98
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	98.96
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.96
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	98.96
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	98.96
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	98.95
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	98.95
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.94
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.93
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	98.93
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.92
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.91
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	98.89
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	98.88
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	98.88
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.86
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.85
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.85
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	98.83
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	98.82
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.82
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	98.82
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.81
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.81
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.78
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.76
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.74
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	98.72
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	98.71
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	98.71
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	98.7
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	98.69
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.69
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.67
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.65
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.63
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.62
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.58
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.54
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	98.54
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.53
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.51
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.49
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	98.49
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.43
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.42
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.38
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	98.35
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.35
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.32
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.3
d1okkd2	207	GTPase domain of the signal recognition particle r	98.28
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.16
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.15
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.12
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.1
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.05
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.95
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	97.84
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	97.83
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.78
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.77
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.75
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	97.71
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.64
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.62
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.57
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.54
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.5
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.48
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.46
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.46
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.41
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.41
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.39
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.35
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.3
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.29
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	97.27
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.23
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.2
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.2
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.18
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.17
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.16
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.15
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.13
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.12
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.09
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.06
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.03
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.01
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.98
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.96
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.93
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.9
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.88
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.87
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.86
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.81
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.76
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.75
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.73
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.72
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.7
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.68
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.61
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.58
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.57
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.57
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.53
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.52
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.52
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.49
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.49
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.49
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.49
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.44
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.41
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.41
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.41
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.38
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.36
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.34
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.32
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.31
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.3
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.29
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.29
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.21
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.18
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.17
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.03
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.0
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.95
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.89
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.87
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.86
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.85
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.83
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.82
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.82
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.8
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.73
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.7
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.64
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.64
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	95.6
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.59
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.55
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.51
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.5
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.48
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.47
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.29
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.19
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.17
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.11
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	95.1
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.03
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.98
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.89
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.88
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.85
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.85
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.7
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.69
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.67
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.64
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.43
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	94.4
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.35
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.28
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.24
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.19
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.02
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	93.9
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	93.9
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.8
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	93.78
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	93.68
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.53
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	93.43
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.33
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	93.27
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	93.21
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.2
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.08
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.94
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	92.88
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	92.76
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.71
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	92.69
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.56
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.53
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.31
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.08
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	91.98
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	91.92
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	91.87
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.85
d1tuea_	205	Replication protein E1 helicase domain {Human papi	91.82
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	91.75
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	90.94
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	90.76
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.71
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	89.12
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	87.65
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.43
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	87.03
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	85.41
d1xpua3	289	Transcription termination factor Rho, ATPase domai	82.0
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	81.22
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	80.93
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	80.44

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.1e-31  Score=221.00  Aligned_cols=172  Identities=36%  Similarity=0.663  Sum_probs=139.7

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      .+|+++|+||+|||||||+|+|+...+++|++||.||+|. .++|...+....     ..+.++.+||+||+.+.++...
T Consensus         2 ~iPv~iitGFLGaGKTTll~~lL~~~~~~riaVI~Ne~g~-~~iD~~~~~~~~-----~~~~el~~gcicc~~~~~~~~~   75 (222)
T d1nija1           2 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGE-VSVDDQLIGDRA-----TQIKTLTNGCICCSRSNELEDA   75 (222)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCS-CCEEEEEECTTS-----CEEEEETTSCEEECTTSCHHHH
T ss_pred             CCCEEEEeeCCCCCHHHHHHHHHhcCCCCcEEEEEecccc-hhhhhhhhcccc-----cceEEecCCcceeccchhHHHH
Confidence            5799999999999999999999998889999999999998 888876665432     3567889999999999888888


Q ss_pred             HHHHHHh----ccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEE------------------------eeEEE
Q 024744          111 LEQLVQR----KERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSII------------------------TDVVI  162 (263)
Q Consensus       111 l~~~~~~----~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i------------------------~~iiv  162 (263)
                      +..++.+    ...+|+|+||++|+++|.++...+..+..+...+.++.++                        +++|+
T Consensus        76 l~~~~~~~~~~~~~~d~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~AD~iv  155 (222)
T d1nija1          76 LLDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRIL  155 (222)
T ss_dssp             HHHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHhhccCCcceeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhCCccc
Confidence            7776653    2468999999999999999876554333333333333332                        29999


Q ss_pred             EecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCC
Q 024744          163 LNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYD  214 (263)
Q Consensus       163 lNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~  214 (263)
                      +||+|++++.      +++++.++.+||.++|+.+.++.++...++.+.++.
T Consensus       156 lNK~Dl~~~~------~~~~~~l~~lNP~a~Ii~~~~g~v~~~~ll~~~~~d  201 (222)
T d1nija1         156 LTKTDVAGEA------EKLHERLARINARAPVYTVTHGDIDLGLLFNTNGFM  201 (222)
T ss_dssp             EECTTTCSCT------HHHHHHHHHHCSSSCEEECCSSCCCGGGGSCCCTTS
T ss_pred             ccccccccHH------HHHHHHHHHHhCCCeEEEeeCCccCHHHhhCCCCCC
Confidence            9999998753      688999999999999999999999999998776654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=6e-18  Score=145.44  Aligned_cols=186  Identities=17%  Similarity=0.191  Sum_probs=101.7

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccccc-----chhhhhc-CC-CCcceeeeeeecCcceEe
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGV-----ERAMINE-GE-GGALVEEWVELANGCICC  101 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~-----d~~~~~~-~~-~~~~~~~~~~l~~g~~~~  101 (263)
                      +..+|+|+|+||||||||+++|+..  ..|.+++++..||.+...-     |...... .. ...++   -.++..+-..
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~i---r~~~~~g~lg  129 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFI---RPVPSSGHLG  129 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEE---EEECC-----
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccc---cccccccccc
Confidence            4679999999999999999999765  3488999999999763310     1111110 00 11111   1111111000


Q ss_pred             ecchhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHH-H---h--hccc----ccccceeeCeEEeeEEEEecCCCCCC
Q 024744          102 TVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLAS-V---L--WLDD----QLESAVRLDSIITDVVILNKVDLVSP  171 (263)
Q Consensus       102 ~~~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~-~---~--~~~~----~l~~~~~~~~~i~~iivlNK~Dl~~~  171 (263)
                      .......+ .-.++ ....+|+|++||+|......... .   +  .+.+    .+......-..+++++|+||+|+...
T Consensus       130 g~~~~~~~-~~~~~-~~~g~d~iliEtvG~gq~e~~i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~aDi~VvNKaD~~~~  207 (327)
T d2p67a1         130 GASQRARE-LMLLC-EAAGYDVVIVETVGVGQSETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNH  207 (327)
T ss_dssp             CHHHHHHH-HHHHH-HHTTCSEEEEEEECCTTHHHHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEECCCCTTCH
T ss_pred             cchhhhhH-HHHHH-HhcCCCeEEEeeccccccchhhhhccceEEEEecCCCchhhhhhchhhhccccEEEEEeecccch
Confidence            11111122 22222 24689999999999876543211 1   0  0000    11110011011359999999998875


Q ss_pred             CCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744          172 ERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       172 ~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                      .........+...++.+.+..        ..+..+++.+||.+|+|+++|++.|.++.
T Consensus       208 ~~~~~~~~~~~~al~~~~~~~--------~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         208 TNVAIARHMYESALHILRRKY--------DEWQPRVLTCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSB--------TTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcccCC--------CCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence            432223445555555444321        12445788999999999999999998654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.70  E-value=8.1e-18  Score=144.46  Aligned_cols=181  Identities=17%  Similarity=0.194  Sum_probs=103.5

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeee-cCcceEeec---c
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVEL-ANGCICCTV---K  104 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l-~~g~~~~~~---~  104 (263)
                      +..+++|+|+||||||||+++|+..  ..|.+++|+..|+.+... ...++..   ..   .+.++ .+.+.|+..   +
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~-gg~llgd---r~---rm~~~~~~~~~~ir~~~~~  122 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRT-GGSILGD---KT---RMARLAIDRNAFIRPSPSS  122 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSS-CCCSSCC---GG---GSTTGGGCTTEEEECCCCC
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHH-Hhccccc---hh---hHHHHhcccceeecccccc
Confidence            4578999999999999999999875  469999999999986331 1111111   01   11121 122223221   1


Q ss_pred             ---hhHHHHHHHHHH--hccCCcEEEEcccCCCCchhHHHHh------hccc----ccccceeeCeEEeeEEEEecCCCC
Q 024744          105 ---HSLVQALEQLVQ--RKERLDHILLETTGLANPAPLASVL------WLDD----QLESAVRLDSIITDVVILNKVDLV  169 (263)
Q Consensus       105 ---~~~~~~l~~~~~--~~~~~d~ilie~~G~~~p~~~~~~~------~~~~----~l~~~~~~~~~i~~iivlNK~Dl~  169 (263)
                         +.+.......+.  +...+|+|+|||+|...........      .+.+    .+......-..++|++|+||+|+.
T Consensus       123 ~~~gg~~~~~~~~i~~~~~~g~d~iiiETVG~gq~e~~~~~~~D~~v~v~~p~~GD~iQ~~k~gilE~aDi~vvNKaD~~  202 (323)
T d2qm8a1         123 GTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIFELADMIAVNKADDG  202 (323)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHHHHCSEEEEECCSTT
T ss_pred             ccccchhHHHHHHHHhhccCCCCeEEEeehhhhhhhhhhhcccceEEEEeeccchhhhhhhhhhHhhhhheeeEeccccc
Confidence               223333333221  2368999999999987654432111      0000    111111111124599999999988


Q ss_pred             CCCCCcchHHHHHH----HHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744          170 SPERSGDSLDELEK----EIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       170 ~~~~~~~~~~~~~~----~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                      +...   .......    .+....+.        ...+..+++.+||++|+|+++|++++..+.
T Consensus       203 ~~~~---~~~~~~~~~~~~l~~~~~~--------~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         203 DGER---RASAAASEYRAALHILTPP--------SATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             CCHH---HHHHHHHHHHHHHTTBCCS--------BTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             cchH---HHHHHHHHHHHHhhccccc--------ccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            7642   1222222    22222221        112445788999999999999999998654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.65  E-value=4e-17  Score=134.07  Aligned_cols=189  Identities=21%  Similarity=0.215  Sum_probs=98.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc-CCCCeEEEEecCCCccc-----ccchhhhhcCCCCcceeeeeeecCcceEee--cch
Q 024744           34 VTVITGFLGAGKSTLVNYILNG-KHGKRIAVILNEFGEEI-----GVERAMINEGEGGALVEEWVELANGCICCT--VKH  105 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~-~~~~~~~ii~~~~g~t~-----~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~--~~~  105 (263)
                      +++|+||+|||||||+++|+.. ..++++++|..+++++.     .+|........ .. ........+||.||.  ..+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d~~~~~~~~~~~id~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~   79 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVE-EI-MREGYGPNGAIVESYDRLME   79 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHH-HH-HTTTCCHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecCcccccCCCcccchHHHHHHHH-HH-hHhhhccCCchhhhhHhHHh
Confidence            6899999999999999999865 45778999988887632     12222111000 00 011223345665553  223


Q ss_pred             hHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHh---h-----------cccc--cc--c---c------eeeCeEEe
Q 024744          106 SLVQALEQLVQRKERLDHILLETTGLANPAPLASVL---W-----------LDDQ--LE--S---A------VRLDSIIT  158 (263)
Q Consensus       106 ~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~---~-----------~~~~--l~--~---~------~~~~~~i~  158 (263)
                      .+..............+++++++.|..++.......   .           .+..  ..  .   .      .......+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~  159 (244)
T d1yrba1          80 KFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGAT  159 (244)
T ss_dssp             THHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSC
T ss_pred             hHHHHHHHHHhhccccceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCC
Confidence            333333333333357899999999977654421110   0           0000  00  0   0      00000124


Q ss_pred             eEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEE---ee------------cCCCChhhhhccccCCcchhhhhhh
Q 024744          159 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIR---SV------------RCQVDLSEVLNCRAYDATHVTRLEG  223 (263)
Q Consensus       159 ~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~---~~------------~~~~~~~~ii~isa~~g~~~~~l~~  223 (263)
                      +++|+||+|+++.++    .+.+....+.++.....+.   ..            ....+.-+++++||++|+|+++|.+
T Consensus       160 ~ivvinK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~  235 (244)
T d1yrba1         160 TIPALNKVDLLSEEE----KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET  235 (244)
T ss_dssp             EEEEECCGGGCCHHH----HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred             ceeeeeccccccHHH----HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHH
Confidence            799999999998642    2222221111110000000   00            0000123578899999999999999


Q ss_pred             hhhhh
Q 024744          224 LLEEH  228 (263)
Q Consensus       224 ~l~~~  228 (263)
                      ++.++
T Consensus       236 ~l~e~  240 (244)
T d1yrba1         236 LAYEH  240 (244)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=5.9e-16  Score=121.56  Aligned_cols=164  Identities=23%  Similarity=0.249  Sum_probs=93.8

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      ..+.|+|+|.+|||||||+|+|+    +.++.++...+++|...........  +.. ..++|+ +|.  ..........
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~----~~~~~~~~~~~~tt~~~~~~~~~~~--~~~-~~~~Dt-pG~--~~~~~~~~~~   73 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLL----GVKVAPISPRPQTTRKRLRGILTEG--RRQ-IVFVDT-PGL--HKPMDALGEF   73 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH----TSCCSCCCSSSCCCCSCEEEEEEET--TEE-EEEEEC-CCC--CCCCSHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHh----CCCceeecccCCcccccccceeeee--eee-eeeccc-ccc--cccccccchh
Confidence            34689999999999999999999    6666667777776544333222221  111 135666 443  1222222233


Q ss_pred             HHHHH-HhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhc
Q 024744          111 LEQLV-QRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEIN  189 (263)
Q Consensus       111 l~~~~-~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~  189 (263)
                      +.... .....+|.+++-.+...........  +...+....   ..++.++|+||+|+.+..      +...+.+++..
T Consensus        74 ~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~--i~~~l~~~~---~~~piilv~NK~Dl~~~~------~~~~~~~~~~~  142 (178)
T d1wf3a1          74 MDQEVYEALADVNAVVWVVDLRHPPTPEDEL--VARALKPLV---GKVPILLVGNKLDAAKYP------EEAMKAYHELL  142 (178)
T ss_dssp             HHHHHHHHTSSCSEEEEEEETTSCCCHHHHH--HHHHHGGGT---TTSCEEEEEECGGGCSSH------HHHHHHHHHTS
T ss_pred             cccccccccccccceeeeechhhhhcccccc--hhhheeccc---cchhhhhhhcccccccCH------HHHHHHHHhhc
Confidence            33322 2225788887744432222221111  111222110   113488999999998753      33444455444


Q ss_pred             CCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          190 SLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       190 p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      +.             .+++++||++|.|+++|.++|.+.
T Consensus       143 ~~-------------~~~~~iSA~~~~gi~~L~~~i~~~  168 (178)
T d1wf3a1         143 PE-------------AEPRMLSALDERQVAELKADLLAL  168 (178)
T ss_dssp             TT-------------SEEEECCTTCHHHHHHHHHHHHTT
T ss_pred             cc-------------CceEEEecCCCCCHHHHHHHHHHh
Confidence            33             356789999999999999988754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.65  E-value=7.4e-16  Score=122.70  Aligned_cols=178  Identities=15%  Similarity=0.191  Sum_probs=91.1

Q ss_pred             eeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCe-EEEEecCCCcccccchhhhhcCCCCcceeeeeeecC
Q 024744           18 THEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKR-IAVILNEFGEEIGVERAMINEGEGGALVEEWVELAN   96 (263)
Q Consensus        18 ~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~-~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~   96 (263)
                      ..+-...+..+..++|.|+|+|+||||||||+|+|+    |.+ ++......++|..........   .   ..+++. .
T Consensus         9 ~~~~~~~~~~p~~~~~~I~lvG~~n~GKSTLin~L~----g~~~~~~~~~~~~~t~~~~~~~~~~---~---~~~~d~-~   77 (195)
T d1svia_           9 VISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLI----NRKNLARTSSKPGKTQTLNFYIIND---E---LHFVDV-P   77 (195)
T ss_dssp             EEEESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHH----TC-------------CCEEEEEETT---T---EEEEEC-C
T ss_pred             EEecCChhHCCCCCCCEEEEECCCCCCHHHHHHHhc----CCCceEEeecccceeeecccccccc---c---ceEEEE-E
Confidence            345566788888889999999999999999999999    433 334444444433222211111   0   122333 2


Q ss_pred             cceEeecchhH----HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCC
Q 024744           97 GCICCTVKHSL----VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPE  172 (263)
Q Consensus        97 g~~~~~~~~~~----~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~  172 (263)
                      +..........    ...+..........|.+++-.+....+.+....  +...+... .    ++.++|+||+|+.+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~--~~~~l~~~-~----~piivv~NK~D~~~~~  150 (195)
T d1svia_          78 GYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKYY-G----IPVIVIATKADKIPKG  150 (195)
T ss_dssp             CBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHHT-T----CCEEEEEECGGGSCGG
T ss_pred             eeccccccccccchhhhHHhhhhccccchhhhhhhhhccccccccccc--cccccccc-c----CcceechhhccccCHH
Confidence            22112222111    122333333334667777633332222221111  11112111 1    3489999999998765


Q ss_pred             CCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          173 RSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       173 ~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +    .+...+.+++.....          +..+++++||.+|.|+++|.++|.+
T Consensus       151 ~----~~~~~~~~~~~l~~~----------~~~~~~~~SA~~~~gi~el~~~i~~  191 (195)
T d1svia_         151 K----WDKHAKVVRQTLNID----------PEDELILFSSETKKGKDEAWGAIKK  191 (195)
T ss_dssp             G----HHHHHHHHHHHHTCC----------TTSEEEECCTTTCTTHHHHHHHHHH
T ss_pred             H----HHHHHHHHHHHhccc----------CCCCEEEEeCCCCCCHHHHHHHHHH
Confidence            3    344444443321110          2235788999999999999988754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=3.3e-16  Score=123.25  Aligned_cols=161  Identities=19%  Similarity=0.179  Sum_probs=85.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec--chhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV--KHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~--~~~~~~~l  111 (263)
                      -|+|+|++|||||||+|+|+    +.+..+.....++ ............ +.. ..++|+ +|......  .......+
T Consensus         3 ~VaivG~~nvGKSTLin~L~----~~~~~~~~~~~~t-~~~~~~~~~~~~-~~~-~~~~Dt-pG~~~~~~~~~~~~~~~l   74 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMT----RAHPKIAPYPFTT-LSPNLGVVEVSE-EER-FTLADI-PGIIEGASEGKGLGLEFL   74 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHC----SSCCEECCCTTCS-SCCEEEEEECSS-SCE-EEEEEC-CCCCCCGGGSCCSCHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh----CCCCceeccCCCc-eeeeeceeeecC-CCe-EEEcCC-CeeecCchHHHHHHHHHH
Confidence            38999999999999999998    5555544433333 332221111111 111 246787 55432111  11112222


Q ss_pred             HHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCC
Q 024744          112 EQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSL  191 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~  191 (263)
                      .    .....+.++........+.......  ...+.........++.++|+||+|+.+.+    ..+.+.+.+...   
T Consensus        75 ~----~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~p~iiv~NK~D~~~~~----~~~~~~~~~~~~---  141 (180)
T d1udxa2          75 R----HIARTRVLLYVLDAADEPLKTLETL--RKEVGAYDPALLRRPSLVALNKVDLLEEE----AVKALADALARE---  141 (180)
T ss_dssp             H----HHTSSSEEEEEEETTSCHHHHHHHH--HHHHHHHCHHHHHSCEEEEEECCTTSCHH----HHHHHHHHHHTT---
T ss_pred             H----HHHhhhhhhhhcccccccccchhhh--hhhhhccccccchhhhhhhhhhhhhhhHH----HHHHHHHHHHhc---
Confidence            2    2245676666444333333221111  01110000000013488999999998764    334444444421   


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  ..+++++||++|+|+++|.+.|.+
T Consensus       142 ------------~~~~~~iSA~tg~gid~L~~~i~~  165 (180)
T d1udxa2         142 ------------GLAVLPVSALTGAGLPALKEALHA  165 (180)
T ss_dssp             ------------TSCEEECCTTTCTTHHHHHHHHHH
T ss_pred             ------------CCeEEEEEcCCCCCHHHHHHHHHH
Confidence                        125788999999999999988764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=7.7e-16  Score=120.04  Aligned_cols=161  Identities=17%  Similarity=0.162  Sum_probs=76.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      .|+|+|.+|||||||+|+|+    |.+.+++...+++|.......+....  .. ..+.++ +|..-.............
T Consensus         2 ~V~liG~~n~GKSsLi~~L~----~~~~~~~~~~~~~t~~~~~~~~~~~~--~~-~~~~d~-~g~~~~~~~~~~~~~~~~   73 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLV----KKKKAIVEDEEGVTRDPVQDTVEWYG--KT-FKLVDT-CGVFDNPQDIISQKMKEV   73 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHH----C--------------CCSEEEEEETT--EE-EEEEEC-TTTTSSGGGCCCHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh----CCCcceecccCceeeccccccccccc--cc-cccccc-cceeeeeccccccccccc
Confidence            58999999999999999999    66777777777765443322222211  10 123333 222111111111111112


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      .......+|++++....-.........+  ...+... .    ++.++|+||+|++++.     ..++.+.+.+.     
T Consensus        74 ~~~~~~~ad~i~~~~~~~~~~~~~~~~~--~~~l~~~-~----~pviiv~NK~Dl~~~~-----~~~~~~~~~~~-----  136 (171)
T d1mkya1          74 TLNMIREADLVLFVVDGKRGITKEDESL--ADFLRKS-T----VDTILVANKAENLREF-----EREVKPELYSL-----  136 (171)
T ss_dssp             HHHHHTTCSEEEEEEETTTCCCHHHHHH--HHHHHHH-T----CCEEEEEESCCSHHHH-----HHHTHHHHGGG-----
T ss_pred             cccccccCcEEEEeeccccccccccccc--ccccccc-c----ccccccchhhhhhhhh-----hhHHHHHHHhc-----
Confidence            2222246788887555432222221111  1112211 1    3488999999997542     12222222221     


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                               ...+++++||++|.|+++|.++|.+.
T Consensus       137 ---------~~~~~i~iSAk~g~gid~L~~~i~~~  162 (171)
T d1mkya1         137 ---------GFGEPIPVSAEHNINLDTMLETIIKK  162 (171)
T ss_dssp             ---------SSCSCEECBTTTTBSHHHHHHHHHHH
T ss_pred             ---------CCCCeEEEecCCCCCHHHHHHHHHHh
Confidence                     23467899999999999999988653

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.57  E-value=2.4e-16  Score=124.49  Aligned_cols=163  Identities=20%  Similarity=0.202  Sum_probs=80.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee--cchhHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT--VKHSLVQA  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~--~~~~~~~~  110 (263)
                      +-|+|+|+||||||||+|+|+    +.++.+....++| ........... .+..+ .++|+ +|..-..  ........
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~----~~~~~~~~~~~~T-~~~~~~~~~~~-~~~~~-~~~Dt-pG~~~~~~~~~~~~~~~   73 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVS----SAKPKIADYHFTT-LVPNLGMVETD-DGRSF-VMADL-PGLIEGAHQGVGLGHQF   73 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSE----EECCEESSTTSSC-CCCCEEEEECS-SSCEE-EEEEH-HHHHHHTTCTTTTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHh----CCCCceecCCCce-EeeeeceeEec-CCcEE-EEecC-CCcccCchHHHHHHHHH
Confidence            458999999999999999999    5565554444433 43332222211 11111 35677 4431111  11112223


Q ss_pred             HHHHHHhccCCcEEEEcc--cCCCCchhHHHHhhcc--cccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 024744          111 LEQLVQRKERLDHILLET--TGLANPAPLASVLWLD--DQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIH  186 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~--~G~~~p~~~~~~~~~~--~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~  186 (263)
                      +..+    ...+.++...  ................  ...... .. ..+|.++|+||+|+.+..      +.+....+
T Consensus        74 l~~~----~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~kp~ivv~NK~Dl~~~~------~~~~~~~~  141 (185)
T d1lnza2          74 LRHI----ERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNL-RL-TERPQIIVANKMDMPEAA------ENLEAFKE  141 (185)
T ss_dssp             HHHH----HHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCS-ST-TTSCBCBEEECTTSTTHH------HHHHHHHH
T ss_pred             HHHH----HHhhhhhheeeecccccchhhhhhhhhhhccchhhh-hc-cCCcchhhccccchHhHH------HHHHHHHH
Confidence            3332    2334443322  1111111111100000  000000 00 013478999999998653      23333333


Q ss_pred             hhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          187 EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       187 ~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      .+...             .+++.+||++|+|+++|.+.+...
T Consensus       142 ~~~~~-------------~~v~~iSA~~g~Gi~~L~~~i~~~  170 (185)
T d1lnza2         142 KLTDD-------------YPVFPISAVTREGLRELLFEVANQ  170 (185)
T ss_dssp             HCCSC-------------CCBCCCSSCCSSTTHHHHHHHHHH
T ss_pred             HhccC-------------CcEEEEECCCCCCHHHHHHHHHHh
Confidence            33222             257899999999999998887643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.7e-16  Score=122.37  Aligned_cols=156  Identities=20%  Similarity=0.229  Sum_probs=85.0

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      |+++|.+|||||||+|+|+    +.+..++.+.+|++...........+  .. ..+.++ +|.. -.........+...
T Consensus         4 I~lvG~~nvGKSsLin~l~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~d~-~g~~-~~~~~~~~~~~~~~   74 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALA----GREAAIVTDIAGTTRDVLREHIHIDG--MP-LHIIDT-AGLR-EASDEVERIGIERA   74 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHH----TSCCSCCCSSTTCCCSCEEEEEEETT--EE-EEEEEC-CCCS-CCSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh----CCCceEeecccccccceEeeeeeccC--ce-eeeccc-cccc-cccccchhHHHHHH
Confidence            6799999999999999999    66667777888775443322222221  11 123444 2221 11111122222222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  194 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i  194 (263)
                      ......+|.+++........ ...........+...   ...++.++|+||+|+.+....                    
T Consensus        75 ~~~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~---~~~~~iilv~NK~Dl~~~~~~--------------------  130 (161)
T d2gj8a1          75 WQEIEQADRVLFMVDGTTTD-AVDPAEIWPEFIARL---PAKLPITVVRNKADITGETLG--------------------  130 (161)
T ss_dssp             HHHHHTCSEEEEEEETTTCC-CCSHHHHCHHHHHHS---CTTCCEEEEEECHHHHCCCCE--------------------
T ss_pred             HHHHHhccccceeecccccc-chhhhhhhhhhhhhc---ccccceeeccchhhhhhhHHH--------------------
Confidence            22235788888755432211 110011111111111   112458899999998765411                    


Q ss_pred             EEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .    ...+..+++++||++|.|+++|.++|.+
T Consensus       131 ~----~~~~~~~~~~iSAk~~~gi~~L~~~l~~  159 (161)
T d2gj8a1         131 M----SEVNGHALIRLSARTGEGVDVLRNHLKQ  159 (161)
T ss_dssp             E----EEETTEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             H----HHhCCCcEEEEECCCCCCHHHHHHHHHh
Confidence            0    0113346889999999999999988764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.1e-14  Score=113.84  Aligned_cols=161  Identities=18%  Similarity=0.244  Sum_probs=84.8

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      .++|+|+|.+|+|||||+|+|+    +.+++++.+.++++............ ..  ....+..++.      .......
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~----~~~~~~~~~~~~t~~~~~~~~~~~~~-~~--~~~~~~~~~~------~~~~~~~   71 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLL----GQKISITSRKAQTTRHRIVGIHTEGA-YQ--AIYVDTPGLH------MEEKRAI   71 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHH----TCSEEECCCCSSCCSSCEEEEEEETT-EE--EEEESSSSCC------HHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHh----CCCceeeccCCCceEEEEEeeeecCC-ce--eEeecCCCce------ecchhhh
Confidence            4679999999999999999999    77888888777663322211111111 00  0122332221      1111122


Q ss_pred             HHHHHhc-----cCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 024744          112 EQLVQRK-----ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIH  186 (263)
Q Consensus       112 ~~~~~~~-----~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~  186 (263)
                      .......     ...+++++....- +........  ...+..     ...+.++++||+|.+...   ..+......+.
T Consensus        72 ~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~~~~~~--~~~l~~-----~~~~~i~v~~k~d~~~~~---~~~~~~~~~~~  140 (179)
T d1egaa1          72 NRLMNKAASSSIGDVELVIFVVEGT-RWTPDDEMV--LNKLRE-----GKAPVILAVNKVDNVQEK---ADLLPHLQFLA  140 (179)
T ss_dssp             HHHHTCCTTSCCCCEEEEEEEEETT-CCCHHHHHH--HHHHHS-----SSSCEEEEEESTTTCCCH---HHHHHHHHHHH
T ss_pred             hhhhhhccccchhhcceeEEEEecC-ccchhHHHH--HHHhhh-----ccCceeeeeeeeeccchh---hhhhhHhhhhh
Confidence            2222111     2455555533322 111111111  111111     112378899999988753   12222223332


Q ss_pred             hhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744          187 EINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       187 ~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                      ...             ...+++++||++|.|+++|.+++.++.
T Consensus       141 ~~~-------------~~~~~~~vSA~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         141 SQM-------------NFLDIVPISAETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             TTS-------------CCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             hhc-------------CCCCEEEEeCcCCCCHHHHHHHHHHhC
Confidence            221             334688999999999999999987654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.55  E-value=1.3e-14  Score=113.99  Aligned_cols=60  Identities=20%  Similarity=0.231  Sum_probs=38.6

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +|.++|+||+|+++.++    .+.....++.+-..       .......+++++||++|+|+++|.+.|.+
T Consensus       112 ~p~iiv~NKiD~~~~~~----~~~~~~~~~~~~~~-------~~~~~~~~iv~iSA~~g~gi~eL~~~I~~  171 (179)
T d1wb1a4         112 IPIIVVITKSDNAGTEE----IKRTEMIMKSILQS-------THNLKNSSIIPISAKTGFGVDELKNLIIT  171 (179)
T ss_dssp             CCBCEEEECTTSSCHHH----HHHHHHHHHHHHHH-------SSSGGGCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             CcceeccccccccCHHH----HHHHHHHHHHHHHH-------hhcCCCCeEEEEEccCCcCHHHHHHHHHh
Confidence            45899999999987642    22232322221100       01113347889999999999999998865

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=2.8e-15  Score=117.85  Aligned_cols=167  Identities=17%  Similarity=0.189  Sum_probs=84.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee-cchhHHH---
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT-VKHSLVQ---  109 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~-~~~~~~~---  109 (263)
                      .|+|+|+||||||||+|+|+    +.++. +++.+|+|+.+..  ....  .   ..++|+ +|..... .......   
T Consensus         2 ~I~lvG~~nvGKSsLin~l~----~~~~~-~~~~~g~T~~~~~--~~~~--~---~~ivDt-pG~~~~~~~~~~~~~~~~   68 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLT----GKKVR-RGKRPGVTRKIIE--IEWK--N---HKIIDM-PGFGFMMGLPKEVQERIK   68 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH----SCCCS-SSSSTTCTTSCEE--EEET--T---EEEEEC-CCBSCCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh----CCCce-eeCCCCEeecccc--cccc--c---ceeccc-CCceeccccccccccccc
Confidence            47899999999999999999    54442 4667777654322  1111  1   246787 4532221 1112222   


Q ss_pred             -HHHHHHH-hccCCcEEEEcccCCCCchhHHHHhh-----cccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHH
Q 024744          110 -ALEQLVQ-RKERLDHILLETTGLANPAPLASVLW-----LDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELE  182 (263)
Q Consensus       110 -~l~~~~~-~~~~~d~ilie~~G~~~p~~~~~~~~-----~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~  182 (263)
                       .+..... .....|.+++-..+...+........     .+..+...+.- .-+|.++|+||+|+++..      +...
T Consensus        69 ~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~~p~iiv~NK~D~~~~~------~~~~  141 (184)
T d2cxxa1          69 DEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE-LDIPTIVAVNKLDKIKNV------QEVI  141 (184)
T ss_dssp             HHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH-TTCCEEEEEECGGGCSCH------HHHH
T ss_pred             hhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH-cCCCEEEEEeeeehhhhH------HHHH
Confidence             2222221 12467888773332211111110000     00001110000 014589999999988653      2222


Q ss_pred             HHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          183 KEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       183 ~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ..+.......      .. .....++++||++|.|+++|.+++.+
T Consensus       142 ~~~~~~~~~~------~~-~~~~~~~~vSA~~g~gi~~L~~~i~~  179 (184)
T d2cxxa1         142 NFLAEKFEVP------LS-EIDKVFIPISAKFGDNIERLKNRIFE  179 (184)
T ss_dssp             HHHHHHHTCC------GG-GHHHHEEECCTTTCTTHHHHHHHHHH
T ss_pred             HHHHHHhccc------cc-ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            2222111100      00 01234678999999999999988754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.53  E-value=2.6e-15  Score=118.33  Aligned_cols=164  Identities=20%  Similarity=0.163  Sum_probs=87.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeec------chhH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTV------KHSL  107 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~------~~~~  107 (263)
                      -|+|+|.+|||||||+|+|+    +.+.+++.+.++++...........+  .. ..++++ +|......      ....
T Consensus        10 kV~iiG~~~~GKSTLin~l~----~~~~~~~~~~~~t~~~~~~~~~~~~~--~~-~~~~d~-~g~~~~~~~~~~~~~~~~   81 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAIL----NKERALVSPIPGTTRDPVDDEVFIDG--RK-YVFVDT-AGLRRKSRVEPRTVEKYS   81 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHH----TSTTEEECCCC------CCEEEEETT--EE-EEESSC-SCC-----------CCSC
T ss_pred             EEEEECCCCCCHHHHHHHHH----CCCcceeecccccccccceeeeccCC--ce-eeeecc-CCccccccccccccccch
Confidence            37899999999999999999    66667777777764443332222211  11 123344 23211000      0000


Q ss_pred             HHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHh
Q 024744          108 VQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHE  187 (263)
Q Consensus       108 ~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~  187 (263)
                      ...+...+   ..+|++++-...-.........+  ...+... .    .+.++|+||+|+....+  ...+.+.+.+++
T Consensus        82 ~~~~~~~~---~~~dvii~v~d~~~~~~~~~~~~--~~~~~~~-~----~~~i~v~nK~D~~~~~~--~~~~~~~~~~~~  149 (186)
T d1mkya2          82 NYRVVDSI---EKADVVVIVLDATQGITRQDQRM--AGLMERR-G----RASVVVFNKWDLVVHRE--KRYDEFTKLFRE  149 (186)
T ss_dssp             CHHHHHHH---HHCSEEEEEEETTTCCCHHHHHH--HHHHHHT-T----CEEEEEEECGGGSTTGG--GCHHHHHHHHHH
T ss_pred             hHHHHHHH---hcCCEEEEeecccccchhhHHHH--HHHHHHc-C----Cceeeeccchhhhcchh--hhhhhHHHHHHH
Confidence            11111222   35678777333221111111111  1111111 1    34889999999986653  245666666666


Q ss_pred             hcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          188 INSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       188 ~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .....          ++.+++++||++|.|+++|.++|.+
T Consensus       150 ~~~~~----------~~~~i~~vSa~~g~gv~~L~~~i~~  179 (186)
T d1mkya2         150 KLYFI----------DYSPLIFTSADKGWNIDRMIDAMNL  179 (186)
T ss_dssp             HCGGG----------TTSCEEECBTTTTBSHHHHHHHHHH
T ss_pred             Hhccc----------CCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            54322          4557899999999999999998864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.52  E-value=8.3e-15  Score=114.87  Aligned_cols=178  Identities=15%  Similarity=0.143  Sum_probs=79.8

Q ss_pred             eCCcccCCCcceEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeee-cCcce
Q 024744           21 FSNSHENDDVSVGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVEL-ANGCI   99 (263)
Q Consensus        21 ~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l-~~g~~   99 (263)
                      ..+...++.-..+-|+|+|+||||||||+|+|+    +.+........+++...........  +.   ..... ..+..
T Consensus         5 ~~~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~   75 (188)
T d1puia_           5 APDIRHLPSDTGIEVAFAGRSNAGKSSALNTLT----NQKSLARTSKTPGRTQLINLFEVAD--GK---RLVDLPGYGYA   75 (188)
T ss_dssp             ESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTC----CC-------------CCEEEEEEET--TE---EEEECCCCC--
T ss_pred             CCChhHCCCccCCEEEEECCCCCCHHHHHHHHh----CCCceEeecccccceeeccceeccc--cc---ceeeeeccccc
Confidence            345566666778889999999999999999998    5555544444443222111111110  00   01111 01110


Q ss_pred             Eeec--chhHHHHHHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcch
Q 024744          100 CCTV--KHSLVQALEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDS  177 (263)
Q Consensus       100 ~~~~--~~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~  177 (263)
                      ....  ..................+.++............. ...+. .+... .    .+.++++||+|+++..+....
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~-~----~~~~~v~~k~D~~~~~~~~~~  148 (188)
T d1puia_          76 EVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIE-WAVDS-N----IAVLVLLTKADKLASGARKAQ  148 (188)
T ss_dssp             ----CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHH-HHHHT-T----CCEEEEEECGGGSCHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhhhhhhhheeEEEEeecccccchhHH-HHHHH-Hhhhc-c----ccccchhhhhhccCHHHHHHH
Confidence            0111  11111122222222233333333222222221111 11101 11110 1    227889999999987532222


Q ss_pred             HHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          178 LDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       178 ~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .+.+++.+....+             ..+++++||++|.|+++|.+.|.+
T Consensus       149 ~~~~~~~l~~~~~-------------~~~~i~vSA~~g~Gid~L~~~i~~  185 (188)
T d1puia_         149 LNMVREAVLAFNG-------------DVQVETFSSLKKQGVDKLRQKLDT  185 (188)
T ss_dssp             HHHHHHHHGGGCS-------------CEEEEECBTTTTBSHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCC-------------CCcEEEEeCCCCCCHHHHHHHHHH
Confidence            3333444433322             236789999999999999988754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.38  E-value=1.2e-12  Score=101.84  Aligned_cols=156  Identities=17%  Similarity=0.219  Sum_probs=81.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++++|.+|||||||+|++.    +.+........|.    +...+...  ... ..+.++ +|      ...+......
T Consensus        18 kI~vvG~~~vGKSsLi~~l~----~~~~~~~~~~~~~----~~~~i~~~--~~~-~~i~d~-~g------~~~~~~~~~~   79 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLA----SEDISHITPTQGF----NIKSVQSQ--GFK-LNVWDI-GG------QRKIRPYWRS   79 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHC----CSCCEEEEEETTE----EEEEEEET--TEE-EEEEEC-SS------CGGGHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh----cCCCCcceeeeee----eEEEeccC--Cee-EeEeec-cc------cccchhHHHH
Confidence            37799999999999999998    4444444443332    11112211  111 134444 22      1222223332


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhh-cccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLW-LDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~-~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ..   ...|.+++-.+ +.++..+.+... ........ .. ..+|.+++.||+|+.++..    ...+.+.+......-
T Consensus        80 ~~---~~~~~ii~v~d-~~d~~s~~~~~~~~~~~~~~~-~~-~~~pillv~nK~Dl~~~~~----~~~~~~~~~~~~~~~  149 (176)
T d1fzqa_          80 YF---ENTDILIYVID-SADRKRFEETGQELTELLEEE-KL-SCVPVLIFANKQDLLTAAP----ASEIAEGLNLHTIRD  149 (176)
T ss_dssp             HH---TTCSEEEEEEE-TTCGGGHHHHHHHHHHHTTCG-GG-TTCCEEEEEECTTSTTCCC----HHHHHHHTTGGGCCS
T ss_pred             Hh---hccceeEEeec-cccccchhhhhhhhhhhhhhh-cc-CCCeEEEEEEecccccccc----HHHHHHHHHHHHHHh
Confidence            32   45677766333 344443322211 11111111 11 1245899999999987652    344444433111100


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                ...+++.+||++|+|++++.+||.+
T Consensus       150 ----------~~~~~~~~SA~tg~gv~e~~~~l~~  174 (176)
T d1fzqa_         150 ----------RVWQIQSCSALTGEGVQDGMNWVCK  174 (176)
T ss_dssp             ----------SCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ----------cCCEEEEEeCCCCCCHHHHHHHHHh
Confidence                      1225778999999999999998754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=2.4e-14  Score=109.93  Aligned_cols=152  Identities=23%  Similarity=0.310  Sum_probs=82.9

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEee---c-chhHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCT---V-KHSLVQA  110 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~---~-~~~~~~~  110 (263)
                      |+++|.+|||||||+|+|+    |.+.+++.+.++++...........  +.. ..+.++ +|..--.   . ...+...
T Consensus         3 I~liG~~n~GKSSLin~l~----g~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~Dt-~G~~~~~~~~~~~~~~~~~   74 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLL----NEDRAIVTDIPGTTRDVISEEIVIR--GIL-FRIVDT-AGVRSETNDLVERLGIERT   74 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHH----HHTBCCCCCSSCCSSCSCCEEEEET--TEE-EEEEES-SCCCSSCCTTCCCCCHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh----CCCceeeeccccccccceeEEEEeC--Cee-EEeccc-cccccCCccHHHHHHHHHH
Confidence            6899999999999999999    5566667777776443322222221  111 134555 3321000   0 0112223


Q ss_pred             HHHHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcC
Q 024744          111 LEQLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINS  190 (263)
Q Consensus       111 l~~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p  190 (263)
                      +..+    ..+|.+++-... .++...... .....+..       .+.++++||+|+.+...    .+.+...+   .+
T Consensus        75 ~~~~----~~ad~ii~v~d~-~~~~~~~~~-~~~~~~~~-------~~~i~~~~k~d~~~~~~----~~~~~~~~---~~  134 (160)
T d1xzpa2          75 LQEI----EKADIVLFVLDA-SSPLDEEDR-KILERIKN-------KRYLVVINKVDVVEKIN----EEEIKNKL---GT  134 (160)
T ss_dssp             HHHH----HHCSEEEEEEET-TSCCCHHHH-HHHHHHTT-------SSEEEEEEECSSCCCCC----HHHHHHHH---TC
T ss_pred             HHHH----HhCCEEEEEEeC-CCCcchhhh-hhhhhccc-------ccceeeeeeccccchhh----hHHHHHHh---CC
Confidence            3322    346777773322 222211111 11111111       22788899999988752    34443333   22


Q ss_pred             CCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          191 LAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       191 ~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .             .+++++||++|+|+++|.++|.+
T Consensus       135 ~-------------~~~~~vSA~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         135 D-------------RHMVKISALKGEGLEKLEESIYR  158 (160)
T ss_dssp             S-------------TTEEEEEGGGTCCHHHHHHHHHH
T ss_pred             C-------------CcEEEEECCCCCCHHHHHHHHHh
Confidence            2             35788999999999999988753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.25  E-value=1.1e-11  Score=95.27  Aligned_cols=154  Identities=16%  Similarity=0.178  Sum_probs=77.3

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      |+++|.+|||||||+++|.+.    ..    ...+.|.+.....+...  ... ..+.|++ |-      .    .+...
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~----~~----~~~~~t~~~~~~~~~~~--~~~-~~~~D~~-G~------~----~~~~~   62 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE----DV----DTISPTLGFNIKTLEHR--GFK-LNIWDVG-GQ------K----SLRSY   62 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC----CC----SSCCCCSSEEEEEEEET--TEE-EEEEEEC-CS------H----HHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcCC----CC----CcccceEeeeeeecccc--ccc-eeeeecC-cc------h----hhhhH
Confidence            679999999999999999843    22    11122232222222221  111 2466773 31      1    12111


Q ss_pred             HH-hccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          115 VQ-RKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       115 ~~-~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      .. .....+.+++-.+ ..+...+.+.. .....+... ... -.|.+||.||+|+.+...    .+.....+...+-..
T Consensus        63 ~~~~~~~~~~~i~v~d-~~d~~~~~~~~~~~~~~~~~~-~~~-~~p~iiv~nK~Dl~~~~~----~~~~~~~~~~~~~~~  135 (165)
T d1ksha_          63 WRNYFESTDGLIWVVD-SADRQRMQDCQRELQSLLVEE-RLA-GATLLIFANKQDLPGALS----CNAIQEALELDSIRS  135 (165)
T ss_dssp             GGGGCTTCSEEEEEEE-TTCGGGHHHHHHHHHHHHTCG-GGT-TCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCCS
T ss_pred             HHhhhhhhhcceeeee-cccchhHHHHHHhhhhhhhhc-ccC-CCceEEEEeccccccccC----HHHHHHHHHhhhhhc
Confidence            11 1245676666333 23333322211 111111111 111 145899999999976542    344433332111100


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                ..-.++.+||++|+|+.++.+||.+
T Consensus       136 ----------~~~~~~~~Sa~~g~gv~e~~~~l~~  160 (165)
T d1ksha_         136 ----------HHWRIQGCSAVTGEDLLPGIDWLLD  160 (165)
T ss_dssp             ----------SCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ----------CCCEEEEEECCCCCCHHHHHHHHHH
Confidence                      1124678999999999999988754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=2.3e-12  Score=98.11  Aligned_cols=65  Identities=18%  Similarity=0.091  Sum_probs=39.9

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      .+.+++.||.|+....    ...++.+.++..+.  ... ..........++.+||++|+|++++.+||.++
T Consensus       102 ~~i~i~~~k~d~~~~~----~~~~i~~~~~~~~~--~~~-~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~~  166 (166)
T d2qtvb1         102 VPFVILGNKIDAPNAV----SEAELRSALGLLNT--TGS-QRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  166 (166)
T ss_dssp             CCEEEEEECTTSSSCC----CHHHHHHHHTCSSC--CC----CCSSCCEEEEEEBTTTTBSHHHHHHHHTTC
T ss_pred             ceEEEEeccccccccC----CHHHHHHHhhhhhh--hHH-HhhcccCCCEEEEeeCCCCCCHHHHHHHHhCC
Confidence            3478899999997654    23455555432211  111 11111122357889999999999999998763

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=6e-12  Score=100.23  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=21.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      |.|+|+|+||||||||+|+|++.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            78999999999999999999954

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.23  E-value=1.7e-12  Score=105.53  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=22.8

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++.|+|+|+|.+|||||||+|+|+..
T Consensus         3 ~r~p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           3 IRSPIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCccHHHHHHHHHhh
Confidence            35588999999999999999999853

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.21  E-value=1.2e-11  Score=98.04  Aligned_cols=57  Identities=16%  Similarity=0.296  Sum_probs=36.8

Q ss_pred             eEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          159 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       159 ~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .++++||+|+.+..+.....+.+.+.+...++            ...+++++||++|+|+++|.+.+.+
T Consensus       135 iiv~inK~D~~d~~~~~~~~~~~~~~~~~~~~------------~~~~iIpiSA~~G~ni~~Ll~~I~~  191 (195)
T d1kk1a3         135 IIIAQNKIELVDKEKALENYRQIKEFIEGTVA------------ENAPIIPISALHGANIDVLVKAIED  191 (195)
T ss_dssp             EEEEEECGGGSCHHHHHHHHHHHHHHHTTSTT------------TTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             ceeeeecccchhhHHHHHHHHHHHHHhccccC------------CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            67789999999864221122233333332221            1235789999999999999988765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.21  E-value=4e-11  Score=92.76  Aligned_cols=57  Identities=11%  Similarity=0.057  Sum_probs=38.1

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .+.++|.||+|+.....    ...+...+....-..          ....++.+||++|+|++++.++|.+
T Consensus       117 ~p~iiv~nK~Dl~~~~~----~~~i~~~~~~~~~~~----------~~~~~~~~Sa~tg~Gi~e~~~~L~~  173 (177)
T d1zj6a1         117 AGLLIFANKQDVKECMT----VAEISQFLKLTSIKD----------HQWHIQACCALTGEGLCQGLEWMMS  173 (177)
T ss_dssp             CEEEEEEECTTSTTCCC----HHHHHHHHTGGGCCS----------SCEEEEECBTTTTBTHHHHHHHHHH
T ss_pred             eEEEEEEEcccccccCc----HHHHHHHHHHHhhHh----------cCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            45899999999876642    344444443221110          1125788999999999999988764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.19  E-value=4.7e-11  Score=95.29  Aligned_cols=58  Identities=19%  Similarity=0.225  Sum_probs=36.8

Q ss_pred             eEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhh
Q 024744          159 DVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEH  228 (263)
Q Consensus       159 ~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~  228 (263)
                      .+|++||+|+.+..+.......+.+.+...++            .-.+++++||++|.|+++|.+.+..+
T Consensus       143 iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~------------~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         143 LIIVQNKVDVVSKEEALSQYRQIKQFTKGTWA------------ENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             EEEEEECGGGSCHHHHHHHHHHHHHHHTTSTT------------TTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             eeeccccCCCccchHHHHHHHHHHHHhccccC------------CCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            67889999998764221112222222222211            12357899999999999999887764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.18  E-value=2.8e-11  Score=92.98  Aligned_cols=156  Identities=17%  Similarity=0.188  Sum_probs=79.3

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|+|||||++++....-.       .+...|.+.+...+...  .. ...++|+++.       ..+.......
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~~~~-------~~~~~T~~~~~~~~~~~--~~-~~~i~D~~G~-------~~~~~~~~~~   67 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASGQFN-------EDMIPTVGFNMRKITKG--NV-TIKLWDIGGQ-------PRFRSMWERY   67 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCC-------CSCCCCCSEEEEEEEET--TE-EEEEEEECCS-------HHHHTTHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCC-------Ccccccceeeeeeeeee--eE-EEEEeecccc-------cccccccccc
Confidence            568899999999999999854211       11111233332222221  11 1246777332       1122122222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhh-cccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLW-LDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~-~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      .   ..++.+++-.+ +.++..+..... +...+... ..+ -+|.+||.||.|+.+...    ...+.+.+....-.. 
T Consensus        68 ~---~~~~~~i~v~d-~~~~~~~~~~~~~~~~~~~~~-~~~-~~pi~lv~nK~Dl~~~~~----~~~i~~~~~~~~~~~-  136 (164)
T d1zd9a1          68 C---RGVSAIVYMVD-AADQEKIEASKNELHNLLDKP-QLQ-GIPVLVLGNKRDLPGALD----EKELIEKMNLSAIQD-  136 (164)
T ss_dssp             H---TTCSEEEEEEE-TTCGGGHHHHHHHHHHHHTCG-GGT-TCCEEEEEECTTSTTCCC----HHHHHHHTTGGGCCS-
T ss_pred             c---cccchhhcccc-cccccccchhhhhhhhhhhhh-ccc-CCcEEEEEeccccchhhh----HHHHHHHHHHHHHHh-
Confidence            2   35666665332 344444332211 11111111 111 155889999999976542    234444332111000 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                               ....++.+||++|+|++++.+||.+
T Consensus       137 ---------~~~~~~e~Sa~~g~gv~e~~~~l~~  161 (164)
T d1zd9a1         137 ---------REICCYSISCKEKDNIDITLQWLIQ  161 (164)
T ss_dssp             ---------SCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ---------CCCEEEEEeCcCCcCHHHHHHHHHH
Confidence                     1124678999999999999988765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.17  E-value=5e-11  Score=92.32  Aligned_cols=153  Identities=12%  Similarity=0.110  Sum_probs=77.7

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|||||||+++++...    .......    .+.........  .. -..+.++ +|.      ..........
T Consensus        15 IvlvG~~~vGKTSli~rl~~~~----~~~~~~t----~~~~~~~~~~~--~~-~~~i~D~-~g~------~~~~~~~~~~   76 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKLGQ----SVTTIPT----VGFNVETVTYK--NV-KFNVWDV-GGQ------DKIRPLWRHY   76 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTCCC----CEEEEEE----TTEEEEEEEET--TE-EEEEEEE-SCC------GGGHHHHGGG
T ss_pred             EEEECCCCCCHHHHHHHHhcCC----CCCccce----eeeeEEEeecc--ce-eeEEecC-CCc------chhhhHHHhh
Confidence            5699999999999999998532    1111111    12111111111  11 1246677 332      1111122111


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHh-hcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHH--hhcCC
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVL-WLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIH--EINSL  191 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~-~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~--~~~p~  191 (263)
                         ...++.+++..+ +.++....... ++...+...  .....+.+++.||+|+.+...    ...+...+.  .+...
T Consensus        77 ---~~~~~~ii~v~D-~s~~~~~~~~~~~l~~~~~~~--~~~~~piiiv~NK~Dl~~~~~----~~~i~~~~~~~~~~~~  146 (173)
T d1e0sa_          77 ---YTGTQGLIFVVD-CADRDRIDEARQELHRIINDR--EMRDAIILIFANKQDLPDAMK----PHEIQEKLGLTRIRDR  146 (173)
T ss_dssp             ---TTTCCEEEEEEE-TTCGGGHHHHHHHHHHHHTSG--GGTTCEEEEEEECTTSTTCCC----HHHHHHHTTGGGCCSS
T ss_pred             ---hcccceEEEEEe-cccchhHHHHHHHHHHHhhhc--ccccceeeeeeeccccccccc----HHHHHHHHHHHHHHhC
Confidence               246777777333 23333332211 111111111  111245899999999987542    234444332  11110


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                 . -.++.+||++|+|++++.++|..
T Consensus       147 -----------~-~~~~e~SA~tg~gv~e~~~~l~~  170 (173)
T d1e0sa_         147 -----------N-WYVQPSCATSGDGLYEGLTWLTS  170 (173)
T ss_dssp             -----------C-EEEEECBTTTTBTHHHHHHHHHH
T ss_pred             -----------C-CEEEEeeCCCCcCHHHHHHHHHH
Confidence                       1 13678999999999999999865

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.17  E-value=5.1e-11  Score=90.28  Aligned_cols=57  Identities=14%  Similarity=0.021  Sum_probs=36.4

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .+.+++.||.|+.+...    ..++..........         ..+ ..++++||++|+|++++.++|..
T Consensus       102 ~~i~~v~~k~d~~~~~~----~~~i~~~~~~~~~~---------~~~-~~~~~~SAktg~gi~e~~~~l~~  158 (160)
T d1r8sa_         102 AVLLVFANKQDLPNAMN----AAEITDKLGLHSLR---------HRN-WYIQATCATSGDGLYEGLDWLSN  158 (160)
T ss_dssp             CEEEEEEECTTSTTCCC----HHHHHHHTTGGGCS---------SCC-EEEEECBTTTTBTHHHHHHHHHH
T ss_pred             ceEEEEeeccccccccc----HHHHHHHHHHHHHh---------hCC-CEEEEeECCCCCCHHHHHHHHHh
Confidence            45889999999887642    23333322211110         011 25788999999999999998754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.16  E-value=5.8e-11  Score=92.67  Aligned_cols=156  Identities=15%  Similarity=0.124  Sum_probs=77.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -++++|.+|||||||++++.    +.......+..|.    ........  ... ..+.+++ |.  ...+     .+..
T Consensus        19 KI~lvG~~~vGKTsLi~~l~----~~~~~~~~~t~~~----~~~~~~~~--~~~-~~i~D~~-g~--~~~~-----~~~~   79 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQ----IGEVVTTKPTIGF----NVETLSYK--NLK-LNVWDLG-GQ--TSIR-----PYWR   79 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTC----CSEEEEECSSTTC----CEEEEEET--TEE-EEEEEEC-------CC-----TTGG
T ss_pred             EEEEECCCCCCHHHHHHHHh----cCCCCccccccce----EEEEEeeC--CEE-EEEEecc-cc--cccc-----hhHH
Confidence            36699999999999999997    4443333332222    11111111  111 2456663 32  1111     0111


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHH-hhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASV-LWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~-~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      .  ....++.+++-.+ +.++....+. .++...+... .. .-.+.+||.||+|+.+...    .+++.+.+...  .+
T Consensus        80 ~--~~~~~~~ii~v~d-~~d~~s~~~~~~~l~~~~~~~-~~-~~~piliv~NK~Dl~~~~~----~~~i~~~~~~~--~~  148 (182)
T d1moza_          80 C--YYADTAAVIFVVD-STDKDRMSTASKELHLMLQEE-EL-QDAALLVFANKQDQPGALS----ASEVSKELNLV--EL  148 (182)
T ss_dssp             G--TTTTEEEEEEEEE-TTCTTTHHHHHHHHHHHTTSS-TT-SSCEEEEEEECTTSTTCCC----HHHHHHHTTTT--TC
T ss_pred             h--hhccceeEEEEee-ecccccchhHHHHHHHHHHhh-cc-CCcceEEEEEeeccccccC----HHHHHHHHHHH--HH
Confidence            1  1135677666333 3444333221 1112222211 11 1145889999999976532    24444443211  11


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .       . ..-.++++||++|+|++++.++|..
T Consensus       149 ~-------~-~~~~~~e~SA~~g~gv~e~~~~l~~  175 (182)
T d1moza_         149 K-------D-RSWSIVASSAIKGEGITEGLDWLID  175 (182)
T ss_dssp             C-------S-SCEEEEEEBGGGTBTHHHHHHHHHH
T ss_pred             h-------h-CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            0       0 0124688999999999998887753

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=6.3e-12  Score=96.70  Aligned_cols=155  Identities=14%  Similarity=0.125  Sum_probs=76.4

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCc-ceeeeeeecCcceEeecchhHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGA-LVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      |+++|.+|+|||||+++++.....      ..... |.+.+.........+. ....+.++++..       ........
T Consensus         5 v~liG~~~vGKSsLi~rl~~~~~~------~~~~~-ti~~~~~~~~~~~~~~~~~~~i~d~~g~~-------~~~~~~~~   70 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKGIFT------KDYKK-TIGVDFLERQIQVNDEDVRLMLWDTAGQE-------EFDAITKA   70 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCCCC------CCSSC-CCSSSEEEEEEEETTEEEEEEEECCTTGG-------GTTCCCHH
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCC------ccccc-ccccccceeeeeecCceeeeeeeccCCcc-------chhhhhhh
Confidence            569999999999999999853210      01011 1222211111110111 112344542211       11111111


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ..   ..++.+++ +..+.++..+.......+.+....   ..++.++|.||+|+.+..+.  ..++.++..+..+  + 
T Consensus        71 ~~---~~~~~~i~-v~d~~~~~s~~~~~~~~~~i~~~~---~~~~iilVgnK~Dl~~~~~v--~~~~~~~~~~~~~--~-  138 (164)
T d1z2aa1          71 YY---RGAQACVL-VFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDDSCI--KNEEAEGLAKRLK--L-  138 (164)
T ss_dssp             HH---TTCCEEEE-EEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--C-
T ss_pred             hh---ccCceEEE-EEeccchhhhhhcccccccccccC---CCceEEEeeccCCcccceee--eehhhHHHHHHcC--C-
Confidence            22   35677666 223455554433211111221111   11458889999999765432  2334444444332  1 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  +.+.+||++|.|++++...+.+
T Consensus       139 ------------~~~e~Sak~g~~v~e~f~~l~~  160 (164)
T d1z2aa1         139 ------------RFYRTSVKEDLNVSEVFKYLAE  160 (164)
T ss_dssp             ------------EEEECBTTTTBSSHHHHHHHHH
T ss_pred             ------------EEEEeccCCCcCHHHHHHHHHH
Confidence                        3578999999999998876643

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.6e-11  Score=92.19  Aligned_cols=155  Identities=17%  Similarity=0.095  Sum_probs=72.2

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      |+++|.+|+|||||++++........    ....+.  ... ..+...+... ...+.++ +|-      +.+.......
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~~~~~----~~~~~~--~~~-~~i~~~~~~~-~l~i~D~-~g~------e~~~~~~~~~   68 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVEDGPE----AEAAGH--TYD-RSIVVDGEEA-SLMVYDI-WEQ------DGGRWLPGHC   68 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-------------CE--EEE-EEEEETTEEE-EEEEEEC-C-------------CHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhCCccCCc----CCeeee--eec-ceeecccccc-ceeeeec-ccc------cccceecccc
Confidence            67999999999999999985321111    110111  000 0011111111 1134555 221      1111112222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  194 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i  194 (263)
                      +   ..+|.+++-. .+.++..+.........+... .....+|.++|.||+|+.+..+.  ...+.++.-+..+  +  
T Consensus        69 ~---~~~d~~ilv~-d~t~~~s~~~~~~~~~~i~~~-~~~~~~piilvgnK~Dl~~~~~v--~~~~~~~~~~~~~--~--  137 (168)
T d2gjsa1          69 M---AMGDAYVIVY-SVTDKGSFEKASELRVQLRRA-RQTDDVPIILVGNKSDLVRSREV--SVDEGRACAVVFD--C--  137 (168)
T ss_dssp             H---TSCSEEEEEE-ETTCHHHHHHHHHHHHHHHHH-CC--CCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--S--
T ss_pred             h---hhhhhhceec-cccccccccccccccchhhcc-cccccceEEEeecccchhhhcch--hHHHHHHHHHhcC--C--
Confidence            2   3677777622 234555443322111222111 11122458899999999765332  1233333333222  1  


Q ss_pred             EEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                 +.+.+||++|.|++++...+.
T Consensus       138 -----------~~~e~Sak~~~~v~~~f~~l~  158 (168)
T d2gjsa1         138 -----------KFIETSAALHHNVQALFEGVV  158 (168)
T ss_dssp             -----------EEEECBTTTTBSHHHHHHHHH
T ss_pred             -----------EEEEEeCCCCcCHHHHHHHHH
Confidence                       356789999999998876654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=8.3e-11  Score=90.76  Aligned_cols=54  Identities=19%  Similarity=0.087  Sum_probs=35.2

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +|.++|.||+|+....+.  ..++.++..+..+  +             ..+.+||++|.|++++...|..
T Consensus       109 ~piilVgnK~Dl~~~~~v--~~~e~~~~~~~~~--~-------------~~~e~Sak~~~~v~e~f~~l~~  162 (171)
T d2erxa1         109 IPIMLVGNKCDESPSREV--QSSEAEALARTWK--C-------------AFMETSAKLNHNVKELFQELLN  162 (171)
T ss_dssp             CCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--C-------------EEEECBTTTTBSHHHHHHHHHH
T ss_pred             CcEEEEeecccccccccc--cHHHHHHHHHHcC--C-------------eEEEEcCCCCcCHHHHHHHHHH
Confidence            458889999998655332  2234444333332  2             3567899999999998766543

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.09  E-value=1e-10  Score=90.61  Aligned_cols=67  Identities=12%  Similarity=0.042  Sum_probs=39.3

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEee--cCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV--RCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~--~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      ++.+++.||.|+....    ....+.+.+.............  ......-.++++||++|+|++++.+||.+
T Consensus       115 ~~~li~~~K~D~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~  183 (186)
T d1f6ba_         115 VPILILGNKIDRPEAI----SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ  183 (186)
T ss_dssp             SCEEEEEECTTSTTCC----CHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred             CceEEEEeccCccccC----CHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            4589999999987754    2345555443222111000000  00001124778999999999999999865

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.6e-11  Score=92.75  Aligned_cols=156  Identities=17%  Similarity=0.105  Sum_probs=73.4

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|+|||||+++++......     ...++.+.......+...+ ......+.++ +|.      +++.......
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~i~d~-~g~------e~~~~~~~~~   73 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRNEFNL-----ESKSTIGVEFATRSIQVDG-KTIKAQIWDT-AGQ------ERYRRITSAY   73 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSCCCC--------CCCSCEEEEEEEEETT-EEEEEEEEEC-SSG------GGTTCCCHHH
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCC-----cccccccceeeeEEEEECC-EEEEEEeccc-CCc------HHHHHHHHHH
Confidence            6799999999999999998532100     0111110110000011110 0011234555 221      1111111112


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  194 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i  194 (263)
                      .   ...+.+++-. .+.++..+.........+.....  .-+|.++|.||+|+.+....  ..+......+..+     
T Consensus        74 ~---~~~~~~i~v~-d~~~~~S~~~~~~~~~~i~~~~~--~~~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~-----  140 (175)
T d2f9la1          74 Y---RGAVGALLVY-DIAKHLTYENVERWLKELRDHAD--SNIVIMLVGNKSDLRHLRAV--PTDEARAFAEKNN-----  140 (175)
T ss_dssp             H---TTCSEEEEEE-ETTCHHHHHTHHHHHHHHHHHSC--TTCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT-----
T ss_pred             h---hccCeEEEEE-ECCCcccchhHHHHHHHHHHhcC--CCCcEEEEEeeecccccccc--hHHHHHHhhcccC-----
Confidence            1   3566666632 24455544322111111221111  11568889999999765322  2222233333222     


Q ss_pred             EEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                .+.+.+||++|.|++++...+.
T Consensus       141 ----------~~~~e~Sa~~g~~i~e~f~~l~  162 (175)
T d2f9la1         141 ----------LSFIETSALDSTNVEEAFKNIL  162 (175)
T ss_dssp             ----------CEEEECCTTTCTTHHHHHHHHH
T ss_pred             ----------ceEEEEecCCCcCHHHHHHHHH
Confidence                      1467899999999998876654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.2e-10  Score=87.65  Aligned_cols=155  Identities=15%  Similarity=0.199  Sum_probs=77.6

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchh--hhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERA--MINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~--~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      |+++|.+|+|||||+++++......     ...+.  ......  .....+ ......+.+++ |      .+.......
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~~~~~-----~~~~~--~~~~~~~~~~~~~~-~~~~~~i~d~~-g------~~~~~~~~~   67 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYDSFDN-----TYQAT--IGIDFLSKTMYLED-RTIRLQLWDTA-G------QERFRSLIP   67 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCS-----SCCCC--CSEEEEEEEEECSS-CEEEEEEEEEC-C------SGGGGGGHH
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCC-----ccccc--eeeeccceeeccCC-CceeeeecccC-C------cchhccchH
Confidence            6799999999999999998542100     01111  111111  111111 11112345552 2      122222222


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...   ..+|.+++-. .+.++..+..+......+....  ....+.++|.||+|+.+....  ..+...+..+..+  +
T Consensus        68 ~~~---~~~~~~ilv~-d~~~~~s~~~i~~~~~~~~~~~--~~~~~iilvgnK~Dl~~~~~~--~~~~~~~~~~~~~--~  137 (164)
T d1yzqa1          68 SYI---RDSAAAVVVY-DITNVNSFQQTTKWIDDVRTER--GSDVIIMLVGNKTDLADKRQV--SIEEGERKAKELN--V  137 (164)
T ss_dssp             HHH---TTCSEEEEEE-ETTCHHHHHTHHHHHHHHHHHH--TTSSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--C
T ss_pred             HHh---hccceEEEee-ccccccchhhhHhhHHHHHHhc--CCCceEEEEecccchhhhhhh--hHHHHHHHHHHcC--C
Confidence            222   4677777733 3445544332211111111110  112458889999999765432  3344444444432  1


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   ..+.+||++|.|++++..+|..
T Consensus       138 -------------~~~e~SAk~g~~v~e~f~~i~~  159 (164)
T d1yzqa1         138 -------------MFIETSAKAGYNVKQLFRRVAA  159 (164)
T ss_dssp             -------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             -------------EEEEecCCCCcCHHHHHHHHHH
Confidence                         3578999999999999887764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.06  E-value=6.7e-11  Score=90.97  Aligned_cols=97  Identities=18%  Similarity=0.169  Sum_probs=56.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCccccc------chhhhhcCCCCcceeeeeeecCcceEeecc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGV------ERAMINEGEGGALVEEWVELANGCICCTVK  104 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~------d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~  104 (263)
                      .+++|+|++|||||||+++|+..  ..|.+++++.++.+. ...      |.......  +.   ....+.++|.||...
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~~-~~~~~~~~~ds~r~~~~--g~---~~~~~~~~~~~~~~~   75 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHG-GEPARPEGVDSVRHERA--GA---VATAVEGDGLLQLHL   75 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-----------------------C---SEEEEEETTEEEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEeccCc-cccchhhccccHHHHhh--cc---ccccccChHHHHHHh
Confidence            47899999999999999999875  568999999999775 322      22212111  11   122333444444322


Q ss_pred             ----hhHHHHHHHHHHhccCCcEEEEcccCCCCchhH
Q 024744          105 ----HSLVQALEQLVQRKERLDHILLETTGLANPAPL  137 (263)
Q Consensus       105 ----~~~~~~l~~~~~~~~~~d~ilie~~G~~~p~~~  137 (263)
                          ..+...+..+  ....+|+|++|..+..++.++
T Consensus        76 ~~~~~~~~~~~~~~--~~~~~D~iivEg~~~~~~~ki  110 (165)
T d1xjca_          76 RRPLWRLDDVLALY--APLRLDLVLVEGYKQERHPKV  110 (165)
T ss_dssp             CCSCCCHHHHHHHH--GGGCCSEEEEECCTTSCSCEE
T ss_pred             hccccchhhHHHHH--hhcccCeEeeecccccCccee
Confidence                1233333322  235789999999987765543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.04  E-value=9.8e-11  Score=89.31  Aligned_cols=57  Identities=18%  Similarity=0.088  Sum_probs=37.4

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      .+.+++.||.|+.+...    ..++...+......-          ...+++++||++|+|++++.++|..
T Consensus       107 ~~i~iv~nk~Dl~~~~~----~~~i~~~~~~~~~~~----------~~~~~~~~SA~~g~gv~e~~~~l~~  163 (169)
T d1upta_         107 AILVVFANKQDMEQAMT----SSEMANSLGLPALKD----------RKWQIFKTSATKGTGLDEAMEWLVE  163 (169)
T ss_dssp             CEEEEEEECTTSTTCCC----HHHHHHHHTGGGCTT----------SCEEEEECCTTTCTTHHHHHHHHHH
T ss_pred             ceEEEEEeecccccccc----HHHHHHHHHHHHHhc----------CCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            34788999999987652    234444432211100          1235789999999999999988754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=2.7e-10  Score=87.88  Aligned_cols=155  Identities=15%  Similarity=0.130  Sum_probs=73.3

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|+|||||+++++...-..     ...++.+.+.....+...+... -..+.|+ +|      .+.+. .+...
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~~f~~-----~~~~~~~~~~~~~~~~~~~~~~-~l~i~Dt-~G------~e~~~-~~~~~   73 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQGLFPP-----GQGATIGVDFMIKTVEINGEKV-KLQIWDT-AG------QERFR-SITQS   73 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSSCCT-----TCCCCCSEEEEEEEEEETTEEE-EEEEEEE-CC------SGGGH-HHHGG
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCC-----cccccccceEEEEEEEECCEEE-EEEEEEC-CC------chhhH-HHHHH
Confidence            6799999999999999998542100     0001110111111111111011 1245666 33      12221 12111


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  194 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i  194 (263)
                      .  ....+.+++-.+ +.++..+.........+...  .....+.++|.||+|+.+..+.  ..++.+...+..+  +  
T Consensus        74 ~--~~~~~~~i~v~d-~~~~~s~~~~~~~~~~i~~~--~~~~~~~ilvgnK~D~~~~~~v--~~~~~~~~~~~~~--~--  142 (171)
T d2ew1a1          74 Y--YRSANALILTYD-ITCEESFRCLPEWLREIEQY--ASNKVITVLVGNKIDLAERREV--SQQRAEEFSEAQD--M--  142 (171)
T ss_dssp             G--STTCSEEEEEEE-TTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECGGGGGGCSS--CHHHHHHHHHHHT--C--
T ss_pred             H--HhccceEEEeee-cccchhhhhhhhhhhhhccc--ccccccEEEEEeecccccccch--hhhHHHHHHHhCC--C--
Confidence            1  146677766332 34444332211111111111  0111447888999998765432  2333433333322  1  


Q ss_pred             EEeecCCCChhhhhccccCCcchhhhhhhhh
Q 024744          195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  225 (263)
Q Consensus       195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l  225 (263)
                                 ..+.+||++|+|++++...+
T Consensus       143 -----------~~~~~SAktg~gV~e~f~~l  162 (171)
T d2ew1a1         143 -----------YYLETSAKESDNVEKLFLDL  162 (171)
T ss_dssp             -----------CEEECCTTTCTTHHHHHHHH
T ss_pred             -----------EEEEEccCCCCCHHHHHHHH
Confidence                       35789999999999986544

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.02  E-value=2.9e-10  Score=87.62  Aligned_cols=53  Identities=19%  Similarity=0.188  Sum_probs=35.6

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +|.++|.||+|+.+..+.  ..++.++..+..+  +             ..+.+||++|.|++++..++.
T Consensus       110 ~piiivgnK~Dl~~~~~v--~~~~~~~~~~~~~--~-------------~~~e~Sak~g~gv~e~f~~l~  162 (168)
T d1u8za_         110 VPFLLVGNKSDLEDKRQV--SVEEAKNRADQWN--V-------------NYVETSAKTRANVDKVFFDLM  162 (168)
T ss_dssp             SCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--C-------------EEEECCTTTCTTHHHHHHHHH
T ss_pred             CcEEEEeccccccccccc--cHHHHHHHHHHcC--C-------------eEEEEcCCCCcCHHHHHHHHH
Confidence            458889999998654322  2344555544443  2             357789999999999877653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5.9e-10  Score=85.50  Aligned_cols=52  Identities=15%  Similarity=0.060  Sum_probs=35.0

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +|.++|.||+|+.....   ..+..++..+..+  +             +.+.+||++|+|++++...+.
T Consensus       109 ~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~--~-------------~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_         109 VPMVLVGNKCDLAARTV---ESRQAQDLARSYG--I-------------PYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             CCEEEEEECTTCSCCCS---CHHHHHHHHHHHT--C-------------CEEECCTTTCTTHHHHHHHHH
T ss_pred             CeEEEEecccccccccc---cHHHHHHHHHHhC--C-------------eEEEEcCCCCcCHHHHHHHHH
Confidence            45899999999876532   2333333333332  1             367899999999999886654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.2e-09  Score=83.64  Aligned_cols=90  Identities=17%  Similarity=0.077  Sum_probs=49.4

Q ss_pred             cCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEee
Q 024744          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV  198 (263)
Q Consensus       119 ~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~  198 (263)
                      ..+|.+++-.+ +.++..+.........+... ......+.++|.||+|+.+..+.  ..++..+..+..+  +      
T Consensus        86 ~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~-~~~~~~~iilv~nK~Dl~~~~~v--~~~e~~~~~~~~~--~------  153 (186)
T d2f7sa1          86 RDAMGFLLMFD-LTSQQSFLNVRNWMSQLQAN-AYCENPDIVLIGNKADLPDQREV--NERQARELADKYG--I------  153 (186)
T ss_dssp             TTCCEEEEEEE-TTCHHHHHHHHHHHHTCCCC-CTTTCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--C------
T ss_pred             hcCCEEEEEEe-ccccccceeeeeccchhhhh-ccCCCceEEEEeeeccchhhhcc--hHHHHHHHHHHcC--C------
Confidence            46787777333 34444433322111111111 11122457889999999765432  2234444444332  1      


Q ss_pred             cCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          199 RCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       199 ~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                             +.+.+||++|+|++++..++.+
T Consensus       154 -------~~~e~Sak~~~~i~e~f~~l~~  175 (186)
T d2f7sa1         154 -------PYFETSAATGQNVEKAVETLLD  175 (186)
T ss_dssp             -------CEEEEBTTTTBTHHHHHHHHHH
T ss_pred             -------EEEEEeCCCCCCHHHHHHHHHH
Confidence                   3678999999999988877643

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7e-10  Score=85.07  Aligned_cols=53  Identities=19%  Similarity=0.083  Sum_probs=35.0

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      .+.+++.||+|+......  ..+..++..+..+  +             +.+.+||++|.|++++...+.
T Consensus       110 ~~iilvgnK~Dl~~~~~~--~~~~~~~~~~~~~--~-------------~~~e~Saktg~~v~e~f~~i~  162 (166)
T d1z0fa1         110 TVIILIGNKADLEAQRDV--TYEEAKQFAEENG--L-------------LFLEASAKTGENVEDAFLEAA  162 (166)
T ss_dssp             CEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--C-------------EEEECCTTTCTTHHHHHHHHH
T ss_pred             ceEEEEcccccchhhccc--HHHHHHHHHHHcC--C-------------EEEEEeCCCCCCHHHHHHHHH
Confidence            447888999998655422  2344444444332  1             367899999999999876654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=3.5e-10  Score=87.42  Aligned_cols=55  Identities=15%  Similarity=0.074  Sum_probs=34.5

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +|.+++.||+|+.+..+. ...+..++..+..+ .             .+.+.+||++|.|++++..++.
T Consensus       113 ~piilv~nK~Dl~~~~~~-v~~~~~~~~~~~~~-~-------------~~~~e~SA~~g~gv~e~f~~l~  167 (175)
T d1ky3a_         113 FPFVILGNKIDAEESKKI-VSEKSAQELAKSLG-D-------------IPLFLTSAKNAINVDTAFEEIA  167 (175)
T ss_dssp             CCEEEEEECTTSCGGGCC-SCHHHHHHHHHHTT-S-------------CCEEEEBTTTTBSHHHHHHHHH
T ss_pred             CcEEEEecccchhhhhcc-hhHHHHHHHHHHcC-C-------------CeEEEEeCCCCcCHHHHHHHHH
Confidence            568999999998764321 01223333333321 1             2357799999999999876654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.00  E-value=3.5e-10  Score=86.87  Aligned_cols=155  Identities=14%  Similarity=0.092  Sum_probs=75.0

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccch--hhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVER--AMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~--~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      |+|+|.+|+|||||+++++...-.      .+...+ .....  ...... .......+.++ +|.      .... .+.
T Consensus         7 i~lvG~~~vGKTsli~rl~~~~f~------~~~~~t-~~~~~~~~~~~~~-~~~~~~~i~d~-~g~------~~~~-~~~   70 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVEDSFD------PNINPT-IGASFMTKTVQYQ-NELHKFLIWDT-AGL------ERFR-ALA   70 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSCCC------TTCCCC-CSEEEEEEEEEET-TEEEEEEEEEE-CCS------GGGG-GGT
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCC------cccccc-ccccccccccccc-ccccceeeeec-CCc------hhhh-HHH
Confidence            678999999999999999854210      011111 11111  001110 01111123444 221      1111 122


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...  ...++.+++..+ +.++..+.........+.....  ...+.++|.||+|+.+....  ..++.++..+..+  +
T Consensus        71 ~~~--~~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~~v--~~~~~~~~~~~~~--~  141 (167)
T d1z0ja1          71 PMY--YRGSAAAIIVYD-ITKEETFSTLKNWVRELRQHGP--PSIVVAIAGNKCDLTDVREV--MERDAKDYADSIH--A  141 (167)
T ss_dssp             HHH--HTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHSC--TTSEEEEEEECTTCGGGCCS--CHHHHHHHHHHTT--C
T ss_pred             HHH--HhhccceEEEee-echhhhhhhHHHhhhhhhhccC--CcceEEEecccchhccccch--hHHHHHHHHHHcC--C
Confidence            222  135677666333 4455544332111111111111  11458899999999754322  2234444433332  2


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   ..+.+||++|.|++++...+.+
T Consensus       142 -------------~~~e~SAk~~~nV~e~f~~l~~  163 (167)
T d1z0ja1         142 -------------IFVETSAKNAININELFIEISR  163 (167)
T ss_dssp             -------------EEEECBTTTTBSHHHHHHHHHH
T ss_pred             -------------EEEEEecCCCCCHHHHHHHHHH
Confidence                         3578999999999998876643

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.99  E-value=4.4e-10  Score=88.97  Aligned_cols=20  Identities=30%  Similarity=0.366  Sum_probs=18.6

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      |+++|..++|||||+++|+.
T Consensus         6 i~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78999999999999999974

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=4e-10  Score=87.95  Aligned_cols=53  Identities=19%  Similarity=0.106  Sum_probs=34.9

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +|.++|.||+|+.+...   ..++..+.....+ .+             ..+.+||++|.|++++..++.
T Consensus       112 ip~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~-~~-------------~~~e~Sak~~~gI~e~f~~l~  164 (184)
T d1vg8a_         112 FPFVVLGNKIDLENRQV---ATKRAQAWCYSKN-NI-------------PYFETSAKEAINVEQAFQTIA  164 (184)
T ss_dssp             SCEEEEEECTTSSCCCS---CHHHHHHHHHHTT-SC-------------CEEECBTTTTBSHHHHHHHHH
T ss_pred             CCEEEEEEeecccccch---hHHHHHHHHHHhc-CC-------------eEEEEcCCCCcCHHHHHHHHH
Confidence            45899999999876542   2333333333221 12             357789999999999887764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=3.9e-10  Score=86.59  Aligned_cols=53  Identities=25%  Similarity=0.182  Sum_probs=34.6

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +|.++|.||+|+.+....  ..++.....+..+  +             +.+.+||++|.|++++...+.
T Consensus       109 ~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~--~-------------~~~e~Sak~g~~i~e~f~~i~  161 (167)
T d1kaoa_         109 VPVILVGNKVDLESEREV--SSSEGRALAEEWG--C-------------PFMETSAKSKTMVDELFAEIV  161 (167)
T ss_dssp             CCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--S-------------CEEEECTTCHHHHHHHHHHHH
T ss_pred             CCEEEEEEccchhhcccc--hHHHHHHHHHHcC--C-------------eEEEECCCCCcCHHHHHHHHH
Confidence            458899999998765322  2233333333322  1             357899999999999877654

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=2.1e-10  Score=87.81  Aligned_cols=99  Identities=16%  Similarity=0.211  Sum_probs=54.5

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCc-ceeeeeeecCcceEeecch---
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGA-LVEEWVELANGCICCTVKH---  105 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~~---  105 (263)
                      +|+++|+|++|||||||+++|+..  ..|.+++++.++++. ...+........... .........+++.|+....   
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD-MDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDE   80 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-------------CHHHHTCSEEEEECSSEEEEEEECSSS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccccc-cccccccCccHHHHHhhhhheeeecCcceEEEeecccc
Confidence            689999999999999999999875  458999999999875 433322221110000 0012333444444433221   


Q ss_pred             ---hHHHHHHHHHHhccCCcEEEEcccCCCC
Q 024744          106 ---SLVQALEQLVQRKERLDHILLETTGLAN  133 (263)
Q Consensus       106 ---~~~~~l~~~~~~~~~~d~ilie~~G~~~  133 (263)
                         .....+..+  .....|++++|..+...
T Consensus        81 ~~~~~~~~~~~~--~~~~~d~~~ve~~~~~~  109 (170)
T d1np6a_          81 EELDLQFLASRM--DTSKLDLILVEGFKHEE  109 (170)
T ss_dssp             CCCCHHHHHHHS--CGGGCSEEEEESCSSCC
T ss_pred             cccchHHHHHHh--cccccCceeEeecccCC
Confidence               112222222  23577999998777544

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.97  E-value=6.6e-10  Score=88.25  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -|+|+|++|||||||+|+|+..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999999954

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=5.2e-10  Score=86.10  Aligned_cols=156  Identities=13%  Similarity=0.110  Sum_probs=75.1

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|+|||||+++++...-...   ..+..+  .......+....... -..+.|+ +|      .+.+. .+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~-~l~~wDt-~G------~e~~~-~~~~~   73 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADDSFTPA---FVSTVG--IDFKVKTIYRNDKRI-KLQIWDT-AG------QERYR-TITTA   73 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCSS---CCCCCS--EEEEEEEEEETTEEE-EEEEEEE-CC------SGGGH-HHHHT
T ss_pred             EEEECCCCcCHHHHHHHHHcCCCCcc---cccccc--cceeeEEEEeecceE-EEEEEEC-CC------chhhH-HHHHH
Confidence            77999999999999999985421000   000111  111111111111111 1245676 33      12222 22222


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  194 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i  194 (263)
                      .  ...+|.+++-. .+.++..+.........+...  .....+.+++.||+|+.+....  ..++.++..+..+  +  
T Consensus        74 ~--~~~ad~~ilv~-d~~~~~s~~~~~~~~~~~~~~--~~~~~~iivv~nK~D~~~~~~v--~~~~~~~~~~~~~--~--  142 (169)
T d3raba_          74 Y--YRGAMGFILMY-DITNEESFNAVQDWSTQIKTY--SWDNAQVLLVGNKCDMEDERVV--SSERGRQLADHLG--F--  142 (169)
T ss_dssp             T--TTTCCEEEEEE-ETTCHHHHHTHHHHHHHHHHH--CCSCCEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--C--
T ss_pred             H--HhcCCEEEEEE-ECccchhhhhhhhhhhhhhcc--cCCcceEEEEEeeccccccccc--chhhhHHHHHHcC--C--
Confidence            1  24678777733 244444332211000111111  1112447788899998765322  1233333333331  2  


Q ss_pred             EEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                 +.+.+||++|.|++++.+++.
T Consensus       143 -----------~~~e~Sak~g~gv~e~f~~l~  163 (169)
T d3raba_         143 -----------EFFEASAKDNINVKQTFERLV  163 (169)
T ss_dssp             -----------EEEECBTTTTBSHHHHHHHHH
T ss_pred             -----------EEEEecCCCCcCHHHHHHHHH
Confidence                       367899999999999887664

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=8.6e-10  Score=85.17  Aligned_cols=53  Identities=21%  Similarity=0.129  Sum_probs=34.6

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +|.++|.||+|+.+..+.  ..++.++..+..+  +             +.+.+||++|.|++++...+.
T Consensus       112 ~piilvgnK~Dl~~~~~v--~~~~~~~~a~~~~--~-------------~~~e~Sak~g~~i~~~f~~l~  164 (172)
T d2g3ya1         112 IPIILVGNKSDLVRCREV--SVSEGRACAVVFD--C-------------KFIETSAAVQHNVKELFEGIV  164 (172)
T ss_dssp             SCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--C-------------EEEECBTTTTBSHHHHHHHHH
T ss_pred             ceEEEEeccccccccccc--cHHHHHHHHHHcC--C-------------eEEEEeCCCCcCHHHHHHHHH
Confidence            458999999998765432  2333333333321  2             246789999999999876654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=6.7e-10  Score=85.20  Aligned_cols=88  Identities=16%  Similarity=0.113  Sum_probs=47.4

Q ss_pred             cCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEee
Q 024744          119 ERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSV  198 (263)
Q Consensus       119 ~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~  198 (263)
                      ..+|.+++-. .+.++..+.........+..... ..-+|.++|.||+|+......  ..++.++..+..+  +      
T Consensus        74 ~~~d~~ilv~-d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~~~r~v--~~~~~~~~a~~~~--~------  141 (167)
T d1xtqa1          74 IDINGYILVY-SVTSIKSFEVIKVIHGKLLDMVG-KVQIPIMLVGNKKDLHMERVI--SYEEGKALAESWN--A------  141 (167)
T ss_dssp             SSCCEEEEEE-ETTCHHHHHHHHHHHHHHHHHHC-SSCCCEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--C------
T ss_pred             hhhhhhhhhc-ccchhhhhhhhhhhhhhhhhccc-ccccceeeeccccccccccch--hHHHHHHHHHHcC--C------
Confidence            4677777622 24455544332111111211111 112458999999998765322  2344444433332  1      


Q ss_pred             cCCCChhhhhccccCCcchhhhhhhhh
Q 024744          199 RCQVDLSEVLNCRAYDATHVTRLEGLL  225 (263)
Q Consensus       199 ~~~~~~~~ii~isa~~g~~~~~l~~~l  225 (263)
                             ..+.+||++|.|++++...+
T Consensus       142 -------~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1         142 -------AFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             -------EEEECCTTCHHHHHHHHHHH
T ss_pred             -------EEEEEecCCCCCHHHHHHHH
Confidence                   24678999999999887654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=2.2e-10  Score=88.63  Aligned_cols=157  Identities=17%  Similarity=0.020  Sum_probs=74.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      =|+|+|.+|+|||||+++++...-.      .....+........+...+... ...+.++ +|.      ..+......
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~~f~------~~~~~t~~~~~~~~~~~~~~~~-~l~~~d~-~g~------~~~~~~~~~   73 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQSYFV------SDYDPTIEDSYTKICSVDGIPA-RLDILDT-AGQ------EEFGAMREQ   73 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSSCC------SSCCTTCCEEEEEEEEETTEEE-EEEEEEC-CCT------TTTSCCHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCC------cccccccccceeeEeccCCeee-eeecccc-ccc------cccccccch
Confidence            3679999999999999999854210      0001110110001111111111 1133444 221      111112222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ..   ..++.+++-.+ +.++..+.........+... .....++.++|.||+|+.+....  ..+...+.-+..+  + 
T Consensus        74 ~~---~~~~~~i~v~d-~~~~~s~~~~~~~~~~i~~~-~~~~~~p~ilvgnK~Dl~~~~~~--~~~~~~~~~~~~~--~-  143 (173)
T d2fn4a1          74 YM---RAGHGFLLVFA-INDRQSFNEVGKLFTQILRV-KDRDDFPVVLVGNKADLESQRQV--PRSEASAFGASHH--V-  143 (173)
T ss_dssp             HH---HHCSEEEEEEE-TTCHHHHHHHHHHHHHHHHH-HTSSCCCEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--C-
T ss_pred             hh---ccceeeeeecc-cccccccchhhhhhHHHHHH-hccCCCceEEEEEeechhhcccc--chhhhhHHHHhcC--C-
Confidence            22   24577666332 44555443221111111111 11112458899999998754321  2233333333321  1 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                  ..+.+||++|.|++++...+.
T Consensus       144 ------------~~~e~Sak~g~gv~e~f~~l~  164 (173)
T d2fn4a1         144 ------------AYFEASAKLRLNVDEAFEQLV  164 (173)
T ss_dssp             ------------EEEECBTTTTBSHHHHHHHHH
T ss_pred             ------------EEEEEeCCCCcCHHHHHHHHH
Confidence                        356789999999999887654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.5e-10  Score=86.58  Aligned_cols=53  Identities=17%  Similarity=0.130  Sum_probs=35.7

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      .+.++|.||+|+.+....  ..++..+..+..+  +             +.+.+||++|.|++++...+.
T Consensus       111 ~p~ilvgnK~Dl~~~~~v--~~~~~~~~~~~~~--~-------------~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1         111 FPMILIGNKADLDHQRQV--TQEEGQQLARQLK--V-------------TYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             CSEEEEEECTTCTTSCSS--CHHHHHHHHHHTT--C-------------EEEECBTTTTBSHHHHHHHHH
T ss_pred             CCEEEEEeccchhhhccc--hHHHHHHHHHHcC--C-------------EEEEEcCCCCcCHHHHHHHHH
Confidence            447889999998765432  2344555444432  1             346799999999998887653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=9.9e-10  Score=84.52  Aligned_cols=156  Identities=15%  Similarity=0.102  Sum_probs=75.5

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCc-ceeeeeeecCcceEeecchhHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGA-LVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~-~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      |+++|.+|+|||||+++++.....       .....+.+.+........... .-..+.++ +|      .+.+......
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~f~-------~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~-~g------~~~~~~~~~~   74 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKGQFH-------EFQESTIGAAFLTQTVCLDDTTVKFEIWDT-AG------QERYHSLAPM   74 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCC-------TTCCCCSSEEEEEEEEEETTEEEEEEEEEE-CC------SGGGGGGHHH
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCC-------cccccccccccccceeeccceEEEEEeccC-CC------chhhhhhHHH
Confidence            689999999999999999854210       000001111111000000011 11123444 22      1222222222


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ..   ..++.+++-. .+.++..+.........+.....  .-++.++|.||+|+.+....  ..+..++..+..+  + 
T Consensus        75 ~~---~~~~~~ilv~-d~~~~~s~~~~~~~~~~~~~~~~--~~~~iilvgnK~Dl~~~~~v--~~e~~~~~~~~~~--~-  143 (170)
T d1r2qa_          75 YY---RGAQAAIVVY-DITNEESFARAKNWVKELQRQAS--PNIVIALSGNKADLANKRAV--DFQEAQSYADDNS--L-  143 (170)
T ss_dssp             HH---TTCSEEEEEE-ETTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--C-
T ss_pred             Hh---hCcceEEEEe-ccchhhHHHHHHHHhhhhhhccC--CCceEEeecccccccccccc--cHHHHHHHHHhcC--C-
Confidence            22   3567777633 24444443322211111211111  11458899999998765432  2333433333221  1 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                  +.+.+||++|.|++++...+..
T Consensus       144 ------------~~~e~SAk~g~~V~e~f~~l~~  165 (170)
T d1r2qa_         144 ------------LFMETSAKTSMNVNEIFMAIAK  165 (170)
T ss_dssp             ------------EEEECCTTTCTTHHHHHHHHHH
T ss_pred             ------------EEEEeeCCCCCCHHHHHHHHHH
Confidence                        3577999999999999876643

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=4.7e-10  Score=86.73  Aligned_cols=53  Identities=23%  Similarity=0.053  Sum_probs=33.9

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +|.++|.||+|+......  ..+......+..+  +             +.+.+||++|.|++++...+.
T Consensus       109 ~piilv~nK~D~~~~~~~--~~~~~~~~a~~~~--~-------------~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1         109 MVIMLIGNKSDLESRRDV--KREEGEAFAREHG--L-------------IFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             CEEEEEEECTTCGGGCCS--CHHHHHHHHHHHT--C-------------EEEEECTTTCTTHHHHHHHHH
T ss_pred             CeEEEEecCCchhhhhhh--HHHHHHHHHHHcC--C-------------EEEEecCCCCCCHHHHHHHHH
Confidence            568899999998654322  2233333333321  2             357799999999998876553

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.94  E-value=1.5e-10  Score=94.12  Aligned_cols=45  Identities=24%  Similarity=0.382  Sum_probs=41.6

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .|+++||+|+||+.+++++.++.     +++|+|++|||||||++.|.+.
T Consensus         6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3           6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             eEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcC
Confidence            38999999999999999998876     8999999999999999999864

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.4e-09  Score=84.22  Aligned_cols=156  Identities=15%  Similarity=0.104  Sum_probs=76.1

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|+|||||+++++........   ....+  .......+....... -..+.|+ +|.      +.........
T Consensus        10 i~vvG~~~vGKTsli~~l~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~-~~~i~Dt-~G~------~~~~~~~~~~   76 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDDTFDPEL---AATIG--VDFKVKTISVDGNKA-KLAIWDT-AGQ------ERFRTLTPSY   76 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCTTC---CCCCS--EEEEEEEEEETTEEE-EEEEEEE-CSS------GGGCCSHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCcc---cccee--ecceeEEEEEecccc-EEEEEEC-CCc------hhhHHHHHHH
Confidence            789999999999999999854210000   00000  000000111111011 1235566 331      1111111122


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  194 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i  194 (263)
                      .   ..+|.+++-.+ +.++..+.........+... ......+.+++.||.|.....-   .....++..+..+  .  
T Consensus        77 ~---~~~~~ii~v~d-~~~~~s~~~~~~~~~~i~~~-~~~~~~~i~~~~nk~d~~~~~v---~~~~~~~~~~~~~--~--  144 (177)
T d1x3sa1          77 Y---RGAQGVILVYD-VTRRDTFVKLDNWLNELETY-CTRNDIVNMLVGNKIDKENREV---DRNEGLKFARKHS--M--  144 (177)
T ss_dssp             H---TTCCEEEEEEE-TTCHHHHHTHHHHHHHHTTC-CSCSCCEEEEEEECTTSSSCCS---CHHHHHHHHHHTT--C--
T ss_pred             H---hcCCEEEEEEE-CCCccccccchhhhhhhccc-ccccceeeEEEeeccccccccc---cHHHHHHHHHHCC--C--
Confidence            2   36677766333 44554433221111122211 1122245789999999765432   2344444444332  1  


Q ss_pred             EEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                 .++.+||++|+|++++.+++-
T Consensus       145 -----------~~~e~Sa~tg~gv~e~f~~l~  165 (177)
T d1x3sa1         145 -----------LFIEASAKTCDGVQCAFEELV  165 (177)
T ss_dssp             -----------EEEECCTTTCTTHHHHHHHHH
T ss_pred             -----------EEEEEeCCCCCCHHHHHHHHH
Confidence                       367899999999999887654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=8.1e-10  Score=85.31  Aligned_cols=53  Identities=19%  Similarity=0.073  Sum_probs=34.2

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +|.++|.||+|+....+.  ......+..+..+  +             +.+.+||++|.|++++..++.
T Consensus       111 ~piivv~nK~D~~~~~~~--~~~~~~~~~~~~~--~-------------~~~e~Sak~~~gi~e~f~~l~  163 (174)
T d2bmea1         111 IVIILCGNKKDLDADREV--TFLEASRFAQENE--L-------------MFLETSALTGENVEEAFVQCA  163 (174)
T ss_dssp             CEEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--C-------------EEEECCTTTCTTHHHHHHHHH
T ss_pred             eEEEEEEecccccchhch--hhhHHHHHHHhCC--C-------------EEEEeeCCCCcCHHHHHHHHH
Confidence            568999999998654322  1223333322221  1             357899999999999877654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.92  E-value=1.4e-10  Score=94.65  Aligned_cols=47  Identities=17%  Similarity=0.294  Sum_probs=43.9

Q ss_pred             CceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            9 PLAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+++++||+|+||+.+++++.++.     +++|+|++|||||||++.|++.
T Consensus         4 d~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_           4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             ceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            5799999999999999999998877     8999999999999999999864

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=8.3e-11  Score=90.92  Aligned_cols=52  Identities=15%  Similarity=-0.009  Sum_probs=33.4

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                      +|.++|.||+|+......    ++.....+.  ...             +.+.+||++|.|++++..+|.+
T Consensus       108 ~piilvgnK~Dl~~~~~~----~~~~~~~~~--~~~-------------~~~e~Sak~~~~v~e~f~~l~~  159 (170)
T d1i2ma_         108 IPIVLCGNKVDIKDRKVK----AKSIVFHRK--KNL-------------QYYDISAKSNYNFEKPFLWLAR  159 (170)
T ss_dssp             CCEEEEEECCCCSCSCCT----TTSHHHHSS--CSS-------------EEEEEBTTTTBTTTHHHHHHHH
T ss_pred             Cceeeecchhhhhhhhhh----hHHHHHHHH--cCC-------------EEEEEeCCCCCCHHHHHHHHHH
Confidence            568999999999765421    111111111  111             3577999999999999877654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.91  E-value=1.5e-10  Score=94.26  Aligned_cols=46  Identities=22%  Similarity=0.204  Sum_probs=42.8

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+|.++||+|+||++++++++++.     +++|+|++|||||||++.|++.
T Consensus         1 gaI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_           1 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            368999999999999999999887     8999999999999999999864

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=2.7e-09  Score=81.39  Aligned_cols=21  Identities=24%  Similarity=0.365  Sum_probs=19.3

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      |+++|.+|||||||+++++..
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            779999999999999999854

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.9e-09  Score=82.59  Aligned_cols=54  Identities=15%  Similarity=0.086  Sum_probs=34.7

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      ++.++|.||+|+......  ..+......++. ...             ..+.+||++|.|++++..++.
T Consensus       109 ~p~ilvgnK~Dl~~~~~~--~~~~~~~~~~~~-~~~-------------~~~e~Sak~g~gv~e~F~~l~  162 (167)
T d1c1ya_         109 VPMILVGNKCDLEDERVV--GKEQGQNLARQW-CNC-------------AFLESSAKSKINVNEIFYDLV  162 (167)
T ss_dssp             CCEEEEEECTTCGGGCCS--CHHHHHHHHHHT-TSC-------------EEEECBTTTTBSHHHHHHHHH
T ss_pred             CeEEEEEEecCccccccc--chhHHHHHHHHh-CCC-------------EEEEEcCCCCcCHHHHHHHHH
Confidence            458899999999765432  223333333332 222             356789999999999877653

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.4e-09  Score=83.93  Aligned_cols=53  Identities=21%  Similarity=0.134  Sum_probs=36.1

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +|.++|.||+|+.+..   ...++.++..+..+.              -+.+.+||++|.|++++...+.
T Consensus       116 ~piilVgnK~Dl~~~~---v~~~~~~~~~~~~~~--------------~~~~e~Sak~~~gI~e~f~~l~  168 (174)
T d1wmsa_         116 FPFVILGNKIDISERQ---VSTEEAQAWCRDNGD--------------YPYFETSAKDATNVAAAFEEAV  168 (174)
T ss_dssp             SCEEEEEECTTCSSCS---SCHHHHHHHHHHTTC--------------CCEEECCTTTCTTHHHHHHHHH
T ss_pred             ceEEEeccccchhhcc---CcHHHHHHHHHHcCC--------------CeEEEEcCCCCcCHHHHHHHHH
Confidence            4589999999986542   234555555554321              1357799999999999876553

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.4e-09  Score=83.66  Aligned_cols=156  Identities=15%  Similarity=0.150  Sum_probs=74.7

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcc-eeeeeeecCcceEeecchhHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGAL-VEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~-~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      ++++|.+|+|||||+++++....      ......++.+.+.........+.. -..+.|++ |-      +.+ ..+..
T Consensus         9 i~vvG~~~vGKTsli~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~-G~------e~~-~~~~~   74 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDGAF------LAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTA-GQ------ERF-RSVTH   74 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCC------CCCCCCCCCSCEEEEEEEEETTEEEEEEEEECC-CC---------------
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC------CcccccceeeeeeEEEEEEecCcEEEEEEEECC-Cc------hhh-HHHHH
Confidence            78999999999999999985421      001101111111111111001111 12456663 21      111 11211


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCe
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAH  193 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~  193 (263)
                      ..  ....|.+++-.+ +.++................  .....+.++|.||+|+.+....  ..++.....+..+  + 
T Consensus        75 ~~--~~~~d~~i~v~d-~~~~~s~~~~~~~~~~~~~~--~~~~~~iilv~~k~d~~~~~~v--~~~~~~~~~~~~~--~-  144 (170)
T d2g6ba1          75 AY--YRDAHALLLLYD-VTNKASFDNIQAWLTEIHEY--AQHDVALMLLGNKVDSAHERVV--KREDGEKLAKEYG--L-  144 (170)
T ss_dssp             CC--GGGCSEEEEEEE-TTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECCSTTSCCCS--CHHHHHHHHHHHT--C-
T ss_pred             Hh--hcCCceeEEEec-CCcccchhhhhhhhhhhhhc--cCCCceEEEEEeeechhhcccc--cHHHHHHHHHHcC--C-
Confidence            11  136677777332 34444332111000001111  1112457888999998876433  2344444444332  1 


Q ss_pred             EEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          194 VIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       194 i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                  +.+.+||++|.|++++..++.
T Consensus       145 ------------~~~e~Sak~g~gi~e~f~~l~  165 (170)
T d2g6ba1         145 ------------PFMETSAKTGLNVDLAFTAIA  165 (170)
T ss_dssp             ------------CEEECCTTTCTTHHHHHHHHH
T ss_pred             ------------EEEEEeCCCCcCHHHHHHHHH
Confidence                        467899999999999887764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=2.9e-10  Score=91.96  Aligned_cols=44  Identities=27%  Similarity=0.426  Sum_probs=40.8

Q ss_pred             EEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      |+++||+|+||+..+++++++.     +++|+|++|||||||++.|...
T Consensus         1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2           1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999998776     8999999999999999999764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.85  E-value=4e-10  Score=91.57  Aligned_cols=45  Identities=22%  Similarity=0.324  Sum_probs=41.8

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .|+++||+|+||+.+++++.++.     +++|+|++|||||||++.|...
T Consensus         3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912           3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcC
Confidence            68999999999999999998776     8999999999999999999854

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.85  E-value=3.1e-10  Score=93.40  Aligned_cols=45  Identities=38%  Similarity=0.474  Sum_probs=42.1

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +++++||+|+||+.++++++++.     +++|+|++|||||||++.|+..
T Consensus         4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_           4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCC
Confidence            79999999999999999998776     8999999999999999999864

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=3e-09  Score=81.51  Aligned_cols=52  Identities=21%  Similarity=0.157  Sum_probs=35.2

Q ss_pred             eeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          158 TDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +.+++.||+|+.+....  ..++.++..++.+  +             +.+.+||++|.|++++...+.
T Consensus       110 ~~ilvgnK~Dl~~~~~v--~~~e~~~~a~~~~--~-------------~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1         110 CLCIVGNKIDLEKERHV--SIQEAESYAESVG--A-------------KHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEEEEEECGGGGGGCCS--CHHHHHHHHHHTT--C-------------EEEEEBTTTTBSHHHHHHHHH
T ss_pred             ceeeecccccccccccc--chHHHHHHHHHcC--C-------------eEEEEecCCCcCHHHHHHHHH
Confidence            47778899998765432  2344555444432  2             357789999999999877654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=2.1e-09  Score=84.52  Aligned_cols=53  Identities=19%  Similarity=0.152  Sum_probs=35.0

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      ++.++|.||+|+.+....  ..+......+..+  .             ..+.+||++|.|++++...+.
T Consensus       112 ~~iilv~nK~D~~~~~~~--~~~~~~~~~~~~~--~-------------~~~e~SAk~g~gi~e~f~~l~  164 (194)
T d2bcgy1         112 VLKLLVGNKCDLKDKRVV--EYDVAKEFADANK--M-------------PFLETSALDSTNVEDAFLTMA  164 (194)
T ss_dssp             CEEEEEEECTTCTTTCCS--CHHHHHHHHHHTT--C-------------CEEECCTTTCTTHHHHHHHHH
T ss_pred             ceEEEEEeccccccccch--hHHHHhhhhhccC--c-------------ceEEEecCcCccHHHHHHHHH
Confidence            458899999999875432  2233333333221  1             357789999999999877664

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=2.3e-09  Score=93.79  Aligned_cols=118  Identities=14%  Similarity=0.079  Sum_probs=58.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQ  113 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~  113 (263)
                      -|+|+|.+|||||||+|+|++.......+....-.++|......  .......  ..++|+ ||....  .....+.+.+
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~--~~~~~~~--~~l~Dt-PG~~~~--~~~~~~~~~~  130 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPY--KHPNIPN--VVFWDL-PGIGST--NFPPDTYLEK  130 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEE--ECSSCTT--EEEEEC-CCGGGS--SCCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeee--eccCCCe--EEEEeC-CCcccc--cccHHHHHHH
Confidence            38999999999999999999532111111111112233322221  1111111  137888 565322  2223334443


Q ss_pred             HHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCC
Q 024744          114 LVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLV  169 (263)
Q Consensus       114 ~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~  169 (263)
                      ..  ...+|++++..++-....+. +..   ..+... .    ++.++|+||+|..
T Consensus       131 ~~--~~~~d~~l~~~~~~~~~~d~-~l~---~~l~~~-~----k~~~~V~nK~D~~  175 (400)
T d1tq4a_         131 MK--FYEYDFFIIISATRFKKNDI-DIA---KAISMM-K----KEFYFVRTKVDSD  175 (400)
T ss_dssp             TT--GGGCSEEEEEESSCCCHHHH-HHH---HHHHHT-T----CEEEEEECCHHHH
T ss_pred             hh--hhcceEEEEecCCCCCHHHH-HHH---HHHHHc-C----CCEEEEEeCcccc
Confidence            32  35789998876653322221 111   122221 1    4489999999963

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=3.1e-09  Score=81.67  Aligned_cols=52  Identities=21%  Similarity=0.238  Sum_probs=34.7

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcc-hhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDAT-HVTRLEGLL  225 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~-~~~~l~~~l  225 (263)
                      +|.+++.||+|+.+....  ..++..+..+..+  +             +.+.+||++|. |++++...+
T Consensus       110 ~p~ilvgnK~Dl~~~~~v--~~e~~~~~~~~~~--~-------------~~~e~Sak~~~~nV~~~F~~l  162 (169)
T d1x1ra1         110 FPMILVANKVDLMHLRKV--TRDQGKEMATKYN--I-------------PYIETSAKDPPLNVDKTFHDL  162 (169)
T ss_dssp             CCEEEEEECTTCSTTCCS--CHHHHHHHHHHHT--C-------------CEEEEBCSSSCBSHHHHHHHH
T ss_pred             ccEEEEecccchhhhcee--ehhhHHHHHHHcC--C-------------EEEEEcCCCCCcCHHHHHHHH
Confidence            458899999999876432  2344555555443  2             35678999885 998876654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.81  E-value=5.3e-09  Score=86.06  Aligned_cols=127  Identities=17%  Similarity=0.193  Sum_probs=66.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEe-ecchhHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICC-TVKHSLVQAL  111 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~-~~~~~~~~~l  111 (263)
                      --|+|+|.+|||||||+|.|+    |.++++++...++|...........  +.. ..++|+ ||..-. .........+
T Consensus        33 l~I~LvG~tg~GKSSliN~il----g~~~~~vs~~~~~T~~~~~~~~~~~--g~~-i~viDT-PGl~~~~~~~~~~~~~i  104 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSII----GERVVSISPFQSEGPRPVMVSRSRA--GFT-LNIIDT-PGLIEGGYINDMALNII  104 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH----TSCCSCCCSSSCCCSSCEEEEEEET--TEE-EEEEEC-CCSEETTEECHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHh----CCCceeecCCCCcceeEEEEEEEec--cEE-EEEEee-ecccCCcchHHHHHHHH
Confidence            367899999999999999999    7777777766676554433333322  222 247888 564321 1123333333


Q ss_pred             HHHHHhccCCcEEEEccc-CCCC--chhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCC
Q 024744          112 EQLVQRKERLDHILLETT-GLAN--PAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPE  172 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~-G~~~--p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~  172 (263)
                      ..... ...++.+++-.. +...  ......+..+...+...+    ....+||+||+|...++
T Consensus       105 ~~~~~-~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~----~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         105 KSFLL-DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGI----WNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             HHHTT-TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGG----GGGEEEEEECCSCCCGG
T ss_pred             HHHHh-cCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhh----hhCEEEEEECcccCCcC
Confidence            33322 345666655322 2111  111111111111111111    01278999999998754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=3.8e-09  Score=80.73  Aligned_cols=155  Identities=13%  Similarity=0.083  Sum_probs=73.6

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALEQL  114 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~~~  114 (263)
                      ++++|.+|+|||||+++++......     ...++.+.......+...+... ...+.|+ +|.      +.+.......
T Consensus         5 i~vvG~~~vGKTSli~~l~~~~~~~-----~~~~t~~~~~~~~~i~~~~~~~-~~~i~Dt-~G~------~~~~~~~~~~   71 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVEDKFNP-----SFITTIGIDFKIKTVDINGKKV-KLQIWDT-AGQ------ERFRTITTAY   71 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCCCCC------------CCEEEEEEESSSCEE-EEEEECC-TTG------GGTSCCCHHH
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCC-----ccCCccceeEEEEEEEECCEEE-EEEEEEC-CCc------hhhHHHHHHH
Confidence            6799999999999999998642110     0001110111111111111111 1235666 331      1111111122


Q ss_pred             HHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeE
Q 024744          115 VQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHV  194 (263)
Q Consensus       115 ~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i  194 (263)
                      .   ..++.+++- ..+.++..+.............  .....+.+++.||.|+.+....   .+..++.....+  +  
T Consensus        72 ~---~~~~~~i~v-~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~i~~~~k~d~~~~~~~---~~~~~~~~~~~~--~--  138 (166)
T d1g16a_          72 Y---RGAMGIILV-YDITDERTFTNIKQWFKTVNEH--ANDEAQLLLVGNKSDMETRVVT---ADQGEALAKELG--I--  138 (166)
T ss_dssp             H---TTEEEEEEE-EETTCHHHHHTHHHHHHHHHHH--SCTTCEEEEEEECTTCTTCCSC---HHHHHHHHHHHT--C--
T ss_pred             H---hcCCEEEEE-EECCCccCHHHHHhhhhhhhcc--ccCcceeeeecchhhhhhhhhh---HHHHHHHHHhcC--C--
Confidence            1   356666662 2344454332211100111111  1111347788899998765432   233333333321  1  


Q ss_pred             EEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          195 IRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       195 ~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                                 +.+.+||++|+|++++..++.
T Consensus       139 -----------~~~~~Sa~~~~~v~e~f~~l~  159 (166)
T d1g16a_         139 -----------PFIESSAKNDDNVNEIFFTLA  159 (166)
T ss_dssp             -----------CEEECBTTTTBSHHHHHHHHH
T ss_pred             -----------eEEEECCCCCCCHHHHHHHHH
Confidence                       467899999999999987764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.78  E-value=7.2e-10  Score=91.23  Aligned_cols=45  Identities=24%  Similarity=0.282  Sum_probs=41.9

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .|+++||+|+||+.+++++.++.     +++|+|++|||||||++.|...
T Consensus         2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            58999999999999999998887     8999999999999999999854

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.76  E-value=7.3e-10  Score=89.34  Aligned_cols=44  Identities=27%  Similarity=0.389  Sum_probs=39.4

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +|+++||+|+||+. ++++.++.     +++|+|++|||||||++.|.+.
T Consensus         1 mi~v~nlsk~y~~~-aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2           1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CEEEEEEEEEeCCE-EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            58999999999985 78888776     8999999999999999999864

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.74  E-value=1.3e-09  Score=88.89  Aligned_cols=45  Identities=18%  Similarity=0.283  Sum_probs=39.6

Q ss_pred             eEEEecceeEeCC-cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN-SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~-~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +|+++||+++|++ .++++++++.     +++|+|++|||||||++.|++.
T Consensus         1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_           1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999955 6788888776     7999999999999999999864

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=3e-09  Score=82.00  Aligned_cols=155  Identities=14%  Similarity=0.127  Sum_probs=57.4

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCcccccc--hhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGVE--RAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~d--~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      |+++|.+|+|||||+++++..    +.   ......|.+.+  ...+...+.. ....+.|+ +|-      +.+ ..+.
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~----~~---~~~~~~t~~~~~~~~~~~~~~~~-~~l~i~D~-~G~------e~~-~~~~   72 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED----AF---NSTFISTIGIDFKIRTIELDGKR-IKLQIWDT-AGQ------ERF-RTIT   72 (173)
T ss_dssp             EEEECCCCC-----------------------CHHHHHCEEEEEEEEEETTEE-EEEEEEEC-----------------C
T ss_pred             EEEECCCCcCHHHHHHHHHhC----CC---CCccCccccceEEEEEEEECCEE-EEEEEEEC-CCc------hhh-HHHH
Confidence            678999999999999999842    11   11100111111  1111111101 11235565 321      111 1111


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLA  192 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~  192 (263)
                      ...  ...+|.+++-.+ +.++..+.........+.....  ...+.++|.||.|+......  ..+...+.....  .+
T Consensus        73 ~~~--~~~~~~~i~v~d-~~~~~s~~~~~~~~~~~~~~~~--~~~~iilv~~k~D~~~~~~~--~~~~~~~~~~~~--~~  143 (173)
T d2fu5c1          73 TAY--YRGAMGIMLVYD-ITNEKSFDNIRNWIRNIEEHAS--ADVEKMILGNKCDVNDKRQV--SKERGEKLALDY--GI  143 (173)
T ss_dssp             CTT--TTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHHSC--TTCEEEEEEEC--CCSCCCS--CHHHHHHHHHHH--TC
T ss_pred             HHh--ccCCCEEEEEEE-CCChhhHHHHHHHHHHhhhhcc--CCceEEEEEecccchhhccc--HHHHHHHHHHhc--CC
Confidence            111  135677777332 4444443322111111211111  11458889999998865432  122333333222  22


Q ss_pred             eEEEeecCCCChhhhhccccCCcchhhhhhhhhhh
Q 024744          193 HVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEE  227 (263)
Q Consensus       193 ~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~  227 (263)
                                   ..+.+||++|+|++++..++..
T Consensus       144 -------------~~~e~Sa~~g~gv~e~f~~l~~  165 (173)
T d2fu5c1         144 -------------KFMETSAKANINVENAFFTLAR  165 (173)
T ss_dssp             -------------EEEECCC---CCHHHHHHHHHH
T ss_pred             -------------EEEEEeCCCCCCHHHHHHHHHH
Confidence                         3578999999999999877653

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=1.2e-08  Score=78.17  Aligned_cols=156  Identities=16%  Similarity=0.125  Sum_probs=74.9

Q ss_pred             EEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCccccc--chhhhhcCCCCcceeeeeeecCcceEeecchhHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGV--ERAMINEGEGGALVEEWVELANGCICCTVKHSLVQALE  112 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~--d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l~  112 (263)
                      ++++|.+|+|||||+++++...-.       .....|.+.  ....+...+.... ..+.++++.       .... .+.
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~~f~-------~~~~~t~~~~~~~~~i~~~~~~~~-l~i~d~~g~-------~~~~-~~~   69 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSNDFA-------ENKEPTIGAAFLTQRVTINEHTVK-FEIWDTAGQ-------ERFA-SLA   69 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCC-------TTCCCCSSEEEEEEEEEETTEEEE-EEEEEECCS-------GGGG-GGH
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCC-------ccccccccceeecccccccccccc-ccccccCCc-------hhHH-HHH
Confidence            568999999999999999864210       000001111  1111111111111 235555221       1111 122


Q ss_pred             HHHHhccCCcEEEEcccCCCCchhHHHHhhcccccccceeeCeEEeeEEEEecCCCCCCCC-CcchHHHHHHHHHhhcCC
Q 024744          113 QLVQRKERLDHILLETTGLANPAPLASVLWLDDQLESAVRLDSIITDVVILNKVDLVSPER-SGDSLDELEKEIHEINSL  191 (263)
Q Consensus       113 ~~~~~~~~~d~ilie~~G~~~p~~~~~~~~~~~~l~~~~~~~~~i~~iivlNK~Dl~~~~~-~~~~~~~~~~~l~~~~p~  191 (263)
                      ...  ...+|.+++-.+ +.++..+.............  .....+.+++.||+|+.+... .....++..+..+..+  
T Consensus        70 ~~~--~~~~~~~ilv~d-~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~--  142 (170)
T d1ek0a_          70 PMY--YRNAQAALVVYD-VTKPQSFIKARHWVKELHEQ--ASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKG--  142 (170)
T ss_dssp             HHH--HTTCSEEEEEEE-TTCHHHHHHHHHHHHHHHHH--SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT--
T ss_pred             HHH--HhccceEEEEEe-CCcccchhhhhhhhhhhccc--cccccceeeeecccccccccchhhhhHHHHHHHHHHcC--
Confidence            221  246777777333 34454443321111111111  111134788999999865421 1112233444444332  


Q ss_pred             CeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          192 AHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       192 ~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +             ..+.+||++|.|++++...|.
T Consensus       143 ~-------------~~~e~Sak~g~gV~e~F~~i~  164 (170)
T d1ek0a_         143 L-------------LFFETSAKTGENVNDVFLGIG  164 (170)
T ss_dssp             C-------------EEEECCTTTCTTHHHHHHHHH
T ss_pred             C-------------EEEEecCCCCcCHHHHHHHHH
Confidence            1             357899999999999887654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.2e-08  Score=76.98  Aligned_cols=21  Identities=29%  Similarity=0.300  Sum_probs=19.3

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      |+|+|.+|+|||||+++++..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999999999864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.1e-08  Score=76.72  Aligned_cols=53  Identities=26%  Similarity=0.277  Sum_probs=33.5

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcch-hhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATH-VTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~-~~~l~~~l~  226 (263)
                      .+.++|.||+|+.+....  ..++.++..++.+  +             +.+.+||++|.| ++++...+.
T Consensus       107 ~piilvgnK~Dl~~~r~V--~~~e~~~~a~~~~--~-------------~~~e~Saktg~gnV~e~F~~l~  160 (168)
T d2atva1         107 VTLILVGNKADLDHSRQV--STEEGEKLATELA--C-------------AFYECSACTGEGNITEIFYELC  160 (168)
T ss_dssp             CCEEEEEECGGGGGGCCS--CHHHHHHHHHHHT--S-------------EEEECCTTTCTTCHHHHHHHHH
T ss_pred             cceeeeccchhhhhhccC--cHHHHHHHHHHhC--C-------------eEEEEccccCCcCHHHHHHHHH
Confidence            458999999998754322  2234444434332  1             357789999985 888765543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=1.1e-08  Score=79.05  Aligned_cols=21  Identities=29%  Similarity=0.216  Sum_probs=18.7

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      |+|+|.+|+|||||+++++..
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            468899999999999999864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.69  E-value=1.7e-09  Score=87.33  Aligned_cols=45  Identities=24%  Similarity=0.344  Sum_probs=38.7

Q ss_pred             eEEEecceeEeCCc----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +|+++||+|+|++.    .+++++++.     +++|+|++|||||||++.|...
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCC
Confidence            58999999999763    468887776     8999999999999999999753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=2.4e-09  Score=86.91  Aligned_cols=45  Identities=27%  Similarity=0.387  Sum_probs=39.3

Q ss_pred             eEEEecceeEeCCc----ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNS----HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~----~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +|+++||+|+|+..    .+++++++.     +++|+|++|||||||++.|...
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            58999999999764    578888776     8999999999999999999754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.65  E-value=1.8e-09  Score=87.59  Aligned_cols=45  Identities=24%  Similarity=0.316  Sum_probs=40.2

Q ss_pred             eEEEecceeEe--CCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEF--SNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~--~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .|+++||+|+|  |+..+++++++.     +++|+|++|||||||++.|..-
T Consensus         3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2           3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            58999999999  667889998776     8999999999999999999763

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.63  E-value=3.2e-09  Score=84.15  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=39.0

Q ss_pred             eEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .|+++||+++|+ .+++++.++.     +++|+|++|||||||++.|++.
T Consensus         2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_           2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc
Confidence            479999999996 5789988776     7999999999999999999864

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=8.9e-09  Score=80.00  Aligned_cols=21  Identities=24%  Similarity=0.241  Sum_probs=19.3

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++|+|.+|+|||||+++++..
T Consensus         8 ivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            779999999999999999864

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=4.7e-09  Score=85.95  Aligned_cols=46  Identities=24%  Similarity=0.320  Sum_probs=40.0

Q ss_pred             ceEEEecceeEeCCc---ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNS---HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~---~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.|+++||+++|++.   .+++++++.     +++|+|++|||||||++.|++.
T Consensus        10 g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          10 GLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             CCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             ceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcc
Confidence            469999999999764   478887776     7999999999999999999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.58  E-value=1.9e-08  Score=81.67  Aligned_cols=44  Identities=25%  Similarity=0.344  Sum_probs=38.7

Q ss_pred             EEEecceeEeC--CcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           12 VRIDETTHEFS--NSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        12 ~~~~~~~~~~~--~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      |+++||+++|.  +..+++++++.     .++|+|++|||||||++.|++.
T Consensus         2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            78999999994  45688888776     7999999999999999999864

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.54  E-value=1.4e-07  Score=75.58  Aligned_cols=24  Identities=29%  Similarity=0.379  Sum_probs=20.2

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ...-++++|-.++|||||+++|+.
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHH
Confidence            334478999999999999999974

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=6.1e-08  Score=75.68  Aligned_cols=21  Identities=24%  Similarity=0.241  Sum_probs=19.1

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      |+++|.+|+|||||+++++..
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            679999999999999999864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.53  E-value=6.4e-08  Score=79.13  Aligned_cols=48  Identities=17%  Similarity=0.266  Sum_probs=41.0

Q ss_pred             CCceEEEecceeEeCCc--ccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744            8 PPLAVRIDETTHEFSNS--HENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus         8 ~~~~~~~~~~~~~~~~~--~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+.|+++||+++|++.  ++++++++.     +++|+|++|||||||++.|++.
T Consensus        10 ~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          10 ATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             CCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcc
Confidence            34569999999999764  578888776     7999999999999999999864

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.51  E-value=1.8e-07  Score=74.03  Aligned_cols=20  Identities=25%  Similarity=0.310  Sum_probs=18.5

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      |+++|.+++|||||+++|+.
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78999999999999999974

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.49  E-value=1.9e-07  Score=74.05  Aligned_cols=91  Identities=18%  Similarity=0.219  Sum_probs=49.1

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC-CCcceeeeeeecCcceEeecchhHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSLV  108 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~-~~~~~~~~~~l~~g~~~~~~~~~~~  108 (263)
                      ..+++++|++||||||.+-+|...  ..|.+++++..|... .+-..++-.... .+.   .+..       .....++.
T Consensus        12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R-~ga~eQL~~~a~~l~v---~~~~-------~~~~~~~~   80 (211)
T d1j8yf2          12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR-PAALEQLQQLGQQIGV---PVYG-------EPGEKDVV   80 (211)
T ss_dssp             SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSS-HHHHHHHHHHHHHHTC---CEEC-------CTTCCCHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccc-cchhHHHHHhccccCc---ceee-------cccchhhh
Confidence            348889999999999999999653  458899999998643 222222111100 000   1111       11223344


Q ss_pred             HHHHHHHH--hccCCcEEEEcccCCCC
Q 024744          109 QALEQLVQ--RKERLDHILLETTGLAN  133 (263)
Q Consensus       109 ~~l~~~~~--~~~~~d~ilie~~G~~~  133 (263)
                      ..+.+-+.  .....|+|||+|.|...
T Consensus        81 ~~~~~a~~~~~~~~~d~IlIDTaGr~~  107 (211)
T d1j8yf2          81 GIAKRGVEKFLSEKMEIIIVDTAGRHG  107 (211)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCCSCC
T ss_pred             HHHHHHHHHhhccCCceEEEecCCcCc
Confidence            44433211  13578999999999753

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=8.9e-08  Score=73.85  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -++++|.+|+|||||+++++..
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4679999999999999999864

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.43  E-value=2.4e-08  Score=81.75  Aligned_cols=45  Identities=27%  Similarity=0.481  Sum_probs=39.6

Q ss_pred             eEEEecceeEeCC--cccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSN--SHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~--~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .|+++||+++|++  .++++++++.     .++|+|++|||||||++.|++.
T Consensus        16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhc
Confidence            5999999999966  4688888776     7999999999999999999864

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=6.9e-07  Score=70.68  Aligned_cols=93  Identities=14%  Similarity=0.188  Sum_probs=56.1

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcC-CCCcceeeeeeecCcceEeecchhHH
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEG-EGGALVEEWVELANGCICCTVKHSLV  108 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~-~~~~~~~~~~~l~~g~~~~~~~~~~~  108 (263)
                      ..+++++|++||||||.+-+|...  ..|++++++..|.-. .+-..++-... ..+.   .+..       .....++.
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R-~gA~eQL~~~a~~l~v---~~~~-------~~~~~d~~   77 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR-AAAVEQLQVWGQRNNI---PVIA-------QHTGADSA   77 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC-HHHHHHHHHHHHHTTC---CEEC-------CSTTCCHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc-ccchhhhhhhhhhcCC---cccc-------cccCCCHH
Confidence            348899999999999999999643  458899999988532 22111211110 0000   1111       12234455


Q ss_pred             HHHHHHHHh--ccCCcEEEEcccCCCCch
Q 024744          109 QALEQLVQR--KERLDHILLETTGLANPA  135 (263)
Q Consensus       109 ~~l~~~~~~--~~~~d~ilie~~G~~~p~  135 (263)
                      ..+.+....  ....|+|||+|.|.....
T Consensus        78 ~~l~~~~~~a~~~~~d~ilIDTaGr~~~d  106 (211)
T d2qy9a2          78 SVIFDAIQAAKARNIDVLIADTAGRLQNK  106 (211)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCCCCGGGH
T ss_pred             HHHHHHHHHHHHcCCCEEEeccCCCcccc
Confidence            555554432  257899999999976543

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.38  E-value=2e-07  Score=75.77  Aligned_cols=63  Identities=17%  Similarity=0.131  Sum_probs=35.6

Q ss_pred             eEEEEecCCCCCCCCCcchHHHHHHHH----HhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhhhhc
Q 024744          159 DVVILNKVDLVSPERSGDSLDELEKEI----HEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLEEHQ  229 (263)
Q Consensus       159 ~iivlNK~Dl~~~~~~~~~~~~~~~~l----~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~~~~  229 (263)
                      .++++||+|+.+.+..+...+++.+.+    +.+...-        ....-+++++||++|+|+.++.+....++
T Consensus       165 iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~--------~~~~v~~VPiSA~~G~nI~~~~~s~~~~w  231 (245)
T d1r5ba3         165 LVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYN--------SKTDVKYMPVSAYTGQNVKDRVDSSVCPW  231 (245)
T ss_dssp             EEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCC--------HHHHEEEEECBTTTTBTTSSCCCTTTCSS
T ss_pred             EEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcC--------cccCCEEEEeeccCCCCcccchhccCCCC
Confidence            678999999986542222233333333    3321100        00112478999999999988765543333

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.35  E-value=4e-07  Score=70.22  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=18.9

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|.+|+|||||+++++..
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            568999999999999999864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.35  E-value=8.9e-08  Score=79.22  Aligned_cols=37  Identities=32%  Similarity=0.342  Sum_probs=23.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCCCccccc
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEFGEEIGV   74 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~g~t~~~   74 (263)
                      -++|+|+||+|||||+|+|.    +++.+.+.+.+|.|.+.
T Consensus       114 ~v~vvG~PNvGKSsliN~L~----~~~~~~~~~~pG~Tr~~  150 (273)
T d1puja_         114 RALIIGIPNVGKSTLINRLA----KKNIAKTGDRPGITTSQ  150 (273)
T ss_dssp             EEEEEESTTSSHHHHHHHHH----TSCCC------------
T ss_pred             EEEEEecCccchhhhhhhhh----ccceEEECCcccccccc
Confidence            48999999999999999999    78888999999987654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=1.4e-06  Score=69.05  Aligned_cols=92  Identities=17%  Similarity=0.193  Sum_probs=53.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCC-CCcceeeeeeecCcceEeecchhHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGE-GGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~-~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      +++++|++||||||.+-+|...  ..+++++++..|.-. .+-..++-.... .+.   .++.       .....++...
T Consensus        13 vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R-~gA~eQL~~~a~~l~i---~~~~-------~~~~~d~~~~   81 (213)
T d1vmaa2          13 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR-AAAIEQLKIWGERVGA---TVIS-------HSEGADPAAV   81 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC-HHHHHHHHHHHHHHTC---EEEC-------CSTTCCHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc-cchhHHHHHHhhhcCc---cccc-------cCCCCcHHHH
Confidence            8899999999999999999653  458899999998532 222222211100 000   1111       1112333333


Q ss_pred             HHHHH--HhccCCcEEEEcccCCCCchh
Q 024744          111 LEQLV--QRKERLDHILLETTGLANPAP  136 (263)
Q Consensus       111 l~~~~--~~~~~~d~ilie~~G~~~p~~  136 (263)
                      +....  ......|+|||+|.|......
T Consensus        82 ~~~~~~~~~~~~~d~ilIDTaGr~~~d~  109 (213)
T d1vmaa2          82 AFDAVAHALARNKDVVIIDTAGRLHTKK  109 (213)
T ss_dssp             HHHHHHHHHHTTCSEEEEEECCCCSCHH
T ss_pred             HHHHHHHHHHcCCCEEEEeccccccchH
Confidence            33222  123578999999999766543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.30  E-value=6e-08  Score=81.21  Aligned_cols=21  Identities=38%  Similarity=0.449  Sum_probs=19.5

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++|+|+||||||||+|+|++.
T Consensus        13 iGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          13 TGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            789999999999999999954

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.28  E-value=1.6e-06  Score=68.44  Aligned_cols=93  Identities=16%  Similarity=0.190  Sum_probs=53.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQA  110 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~  110 (263)
                      .+++++|++||||||.+-+|...  ..|++++++..|... .+-..++-...       +...+ + +..+....++...
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R-~gA~eQL~~~a-------~~l~i-~-~~~~~~~~d~~~~   76 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR-AAGGTQLSEWG-------KRLSI-P-VIQGPEGTDPAAL   76 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS-TTHHHHHHHHH-------HHHTC-C-EECCCTTCCHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccc-ccchhhHhhcc-------cccCc-e-EEeccCCccHHHH
Confidence            48899999999999999999653  458899999988532 22111111110       00111 0 0001122334444


Q ss_pred             HHHHHH--hccCCcEEEEcccCCCCch
Q 024744          111 LEQLVQ--RKERLDHILLETTGLANPA  135 (263)
Q Consensus       111 l~~~~~--~~~~~d~ilie~~G~~~p~  135 (263)
                      +.+...  .....|+|||+|.|.....
T Consensus        77 ~~~~~~~~~~~~~d~ilIDTaGr~~~d  103 (207)
T d1okkd2          77 AYDAVQAMKARGYDLLFVDTAGRLHTK  103 (207)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCCCCTTC
T ss_pred             HHHHHHHHHHCCCCEEEcCccccchhh
Confidence            433321  1247899999999976543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.16  E-value=2.7e-06  Score=67.05  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=31.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      .+++++|++||||||.+-+|...  ..|++++++..|..
T Consensus        11 ~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   49 (207)
T d1ls1a2          11 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ   49 (207)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence            47899999999999999999653  45889999998854

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.15  E-value=9.4e-07  Score=71.45  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=18.3

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~   53 (263)
                      -++++|-.++|||||+.+|+
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            47899999999999999996

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=6.1e-07  Score=72.22  Aligned_cols=42  Identities=21%  Similarity=0.286  Sum_probs=36.1

Q ss_pred             ceEEEecceeEeCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHcc
Q 024744           10 LAVRIDETTHEFSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++++||+++|    .++++++.     +++|+|++|||||||++.|.+.
T Consensus         2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_           2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred             eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence            579999998775    57777666     8999999999999999999854

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.10  E-value=5.4e-07  Score=72.56  Aligned_cols=42  Identities=24%  Similarity=0.350  Sum_probs=33.6

Q ss_pred             eEEEecceeEeCCcccCCCcce----EEEEEEccCCCcHHHHHHHHHcc
Q 024744           11 AVRIDETTHEFSNSHENDDVSV----GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~----~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+++ ++.|+||+...  ++++    .+++|+|++|||||||++.|.+.
T Consensus         2 ~l~v-~~~k~~g~~~~--~vs~~~~~e~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1           2 FLKV-RAEKRLGNFRL--NVDFEMGRDYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             CEEE-EEEEEETTEEE--EEEEEECSSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEE-EEEEEECCEEE--EEEEEeCCEEEEEECCCCChHHHHHHHHHcC
Confidence            4667 67899999765  3332    27899999999999999999864

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.05  E-value=9.9e-06  Score=66.49  Aligned_cols=25  Identities=28%  Similarity=0.286  Sum_probs=21.8

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHc
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .++.-|+|+|..|+|||||+.+|+.
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~   28 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILY   28 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHH
Confidence            3566789999999999999999964

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.95  E-value=5.7e-06  Score=65.93  Aligned_cols=19  Identities=42%  Similarity=0.688  Sum_probs=17.8

Q ss_pred             EEEEccCCCcHHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~   53 (263)
                      |+++|--++|||||+.+|+
T Consensus         6 i~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHH
Confidence            7899999999999999996

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=1.9e-05  Score=65.26  Aligned_cols=26  Identities=19%  Similarity=0.322  Sum_probs=23.5

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...|-++|+|--+||||||||+|++.
T Consensus        24 ~~~P~ivvvG~~SsGKSsliNaLlg~   49 (299)
T d2akab1          24 LDLPQIAVVGGQSAGKSSVLENFVGR   49 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhCC
Confidence            56888999999999999999999863

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.83  E-value=3e-06  Score=69.90  Aligned_cols=22  Identities=36%  Similarity=0.430  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -++|+|+||||||||+|+|+..
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHCC
Confidence            3789999999999999999953

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=3.5e-06  Score=69.59  Aligned_cols=48  Identities=23%  Similarity=0.344  Sum_probs=37.6

Q ss_pred             eCCcccCCCcceE-----EEEEEccCCCcHHHHHHHHHccC--------CCCeEEEEecCC
Q 024744           21 FSNSHENDDVSVG-----VTVITGFLGAGKSTLVNYILNGK--------HGKRIAVILNEF   68 (263)
Q Consensus        21 ~~~~~~~~~~~~~-----vv~i~G~~gaGKSTLin~l~~~~--------~~~~~~ii~~~~   68 (263)
                      |++.++++++++.     +++|+|++|||||||++.|++..        -+.+++++.+++
T Consensus        46 ~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~i~~v~Q~~  106 (281)
T d1r0wa_          46 LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGRVSFCSQFS  106 (281)
T ss_dssp             HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSCEEEECSSC
T ss_pred             CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECCEEEEEeccc
Confidence            3667889988776     79999999999999999998742        134677776663

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.77  E-value=3.9e-05  Score=62.61  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=20.3

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +.-|+|+|..++|||||+.+|+.
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHH
Confidence            45689999999999999999964

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.75  E-value=9e-06  Score=64.62  Aligned_cols=22  Identities=36%  Similarity=0.619  Sum_probs=20.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ...+++|.+|+|||||+|+|+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~  117 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINP  117 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHST
T ss_pred             CeEEEECCCCCCHHHHHHhhcc
Confidence            3778999999999999999984

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.71  E-value=7.2e-06  Score=68.73  Aligned_cols=21  Identities=24%  Similarity=0.123  Sum_probs=19.0

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      |+|+|+||||||||+|+|++.
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EeEECCCCCCHHHHHHHHHCC
Confidence            789999999999999999953

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.64  E-value=1.3e-05  Score=59.18  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=20.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      .+|+|+|+||||||||.++|....
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            478899999999999999997543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.62  E-value=1.2e-05  Score=60.90  Aligned_cols=21  Identities=48%  Similarity=0.662  Sum_probs=19.3

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++|+|++|+|||||++.|++.
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHhc
Confidence            689999999999999999864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.6e-05  Score=60.08  Aligned_cols=35  Identities=26%  Similarity=0.286  Sum_probs=27.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~   68 (263)
                      .|.|+|+||+|||||+++++..  ..+.+++++...+
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~   39 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEE   39 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence            4789999999999999999764  3466666666554

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.54  E-value=1.6e-05  Score=59.61  Aligned_cols=25  Identities=28%  Similarity=0.373  Sum_probs=21.8

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHc
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      |-+|.|+|+|+|||||||+.+.|.+
T Consensus         2 m~~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           2 MLLPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3467789999999999999999975

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.50  E-value=2.4e-05  Score=58.73  Aligned_cols=27  Identities=22%  Similarity=0.313  Sum_probs=23.2

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHccC
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      |+..+|+|+|+|||||||+.+.|.+..
T Consensus         1 M~~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           1 MTTRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            455789999999999999999998653

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.48  E-value=2.7e-05  Score=60.42  Aligned_cols=34  Identities=15%  Similarity=0.114  Sum_probs=26.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE   67 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~   67 (263)
                      +|+++|.|||||||+.++|.+.  ..+.++.++..|
T Consensus         4 li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D   39 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG   39 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc
Confidence            6889999999999999999764  235556555544

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=3.9e-05  Score=59.26  Aligned_cols=30  Identities=27%  Similarity=0.291  Sum_probs=25.3

Q ss_pred             cCCCcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           26 ENDDVSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        26 ~~~~~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +......|+++|+|+|||||||+...|.+.
T Consensus         2 ~~~~~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           2 AFSPDQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             CSCTTTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            344557899999999999999999999853

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.46  E-value=3.4e-05  Score=57.65  Aligned_cols=24  Identities=33%  Similarity=0.378  Sum_probs=21.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      ++|+|+|+|||||||+.++|.+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            578999999999999999998653

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.41  E-value=3.5e-05  Score=58.19  Aligned_cols=25  Identities=32%  Similarity=0.244  Sum_probs=21.7

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ....|+|+|++|||||||.++|.+.
T Consensus         6 ~~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           6 FAKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             TCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999864

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.41  E-value=5.1e-05  Score=57.32  Aligned_cols=33  Identities=27%  Similarity=0.462  Sum_probs=24.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL   65 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~   65 (263)
                      .+|+|+|++||||||+.+.|.+.  ..+.++.++.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~   36 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS   36 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEe
Confidence            47899999999999999999653  3344444443

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.39  E-value=3.7e-05  Score=58.75  Aligned_cols=25  Identities=32%  Similarity=0.396  Sum_probs=21.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHG   58 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~   58 (263)
                      +++|+||+|||||||++.|.+..++
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~~~   28 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERIPN   28 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCC
Confidence            6889999999999999999876544

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=5.5e-05  Score=56.61  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=22.5

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+..+++|.|+|||||||+.+.|.+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            45678999999999999999999753

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.30  E-value=0.0001  Score=55.84  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=25.3

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL   65 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~   65 (263)
                      .+++|.|.+||||||+.+.|.+.  ..+.++..+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~   36 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN   36 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            67899999999999999999754  3355554444

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.29  E-value=7.8e-05  Score=57.32  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=21.6

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.++|+|+|+|||||||+.+.|.+.
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4468999999999999999999753

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=9e-05  Score=62.46  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.1

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+.-|+|+|..++|||||+.+|+.
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHH
Confidence            455699999999999999999974

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=8.7e-05  Score=58.04  Aligned_cols=28  Identities=25%  Similarity=0.356  Sum_probs=23.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeE
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRI   61 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~   61 (263)
                      +++|+||+|||||||++.|+...+....
T Consensus         4 livi~GPSG~GK~tl~~~L~~~~p~~~~   31 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKTQPLYDT   31 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSCTTTE
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCCccCc
Confidence            6889999999999999999987654333

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.20  E-value=0.00018  Score=53.83  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=20.8

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -.+|+|+|+|||||||+.+.|.+.
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357899999999999999999753

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.20  E-value=9.1e-05  Score=55.51  Aligned_cols=21  Identities=19%  Similarity=0.504  Sum_probs=18.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +|.|+|+|||||||+-++|..
T Consensus         8 ~I~l~G~~GsGKTTia~~La~   28 (183)
T d1m8pa3           8 TIFLTGYMNSGKDAIARALQV   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            677999999999999999864

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.18  E-value=9.5e-05  Score=55.33  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=20.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHccC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      .|+|+|+|||||||+.+.|.+..
T Consensus         7 ~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           7 NILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998643

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.17  E-value=0.00017  Score=60.33  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=27.0

Q ss_pred             EEEEccCCCcHHHHHHHHHccC-CCCeEEEEecC
Q 024744           35 TVITGFLGAGKSTLVNYILNGK-HGKRIAVILNE   67 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~-~~~~~~ii~~~   67 (263)
                      ++|+|++|||||||+|+|+... +..++.++...
T Consensus       169 ili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~  202 (323)
T d1g6oa_         169 VIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT  202 (323)
T ss_dssp             EEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred             EEEEeeccccchHHHHHHhhhcccccceeeccch
Confidence            7899999999999999999874 46677666554

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.16  E-value=0.00013  Score=55.71  Aligned_cols=33  Identities=30%  Similarity=0.386  Sum_probs=24.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL   65 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~   65 (263)
                      -+|+|+|++|||||||.+.|...  ..+....++.
T Consensus        23 ~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~   57 (198)
T d1rz3a_          23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH   57 (198)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccccccceecc
Confidence            37889999999999999999653  2243444444

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0001  Score=56.25  Aligned_cols=24  Identities=21%  Similarity=0.404  Sum_probs=20.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKH   57 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~   57 (263)
                      .++|+||+|||||||+++|++..+
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cEEEECCCCCCHHHHHHHHHHhCC
Confidence            477899999999999999987544

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00011  Score=55.81  Aligned_cols=23  Identities=48%  Similarity=0.593  Sum_probs=20.6

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      -.+|+++|+|||||||+.++++.
T Consensus        14 p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          14 PEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999975

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.12  E-value=0.00073  Score=58.04  Aligned_cols=36  Identities=28%  Similarity=0.385  Sum_probs=27.2

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE   67 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~   67 (263)
                      ..+++|+|+.||||||++..++..  .+++++..+.+.
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdP  195 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP  195 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccC
Confidence            348999999999999999999875  234555544444

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.09  E-value=0.00013  Score=57.76  Aligned_cols=53  Identities=19%  Similarity=0.330  Sum_probs=36.3

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      ++.+||+||+||++++    +.+.+...........             +++.+|++++.|+++|..++.
T Consensus        42 i~pvIvlnK~DL~~~~----~~~~~~~~~~~~~~~~-------------~v~~vSa~~~~g~~~L~~~l~   94 (225)
T d1u0la2          42 LETVMVINKMDLYDED----DLRKVRELEEIYSGLY-------------PIVKTSAKTGMGIEELKEYLK   94 (225)
T ss_dssp             CEEEEEECCGGGCCHH----HHHHHHHHHHHHTTTS-------------CEEECCTTTCTTHHHHHHHHS
T ss_pred             CCEEEEEeCcccCCHH----HHHHHHHhhcccccce-------------eEEEeccccchhHhhHHHHhc
Confidence            3489999999999864    3444555444433322             467788888888888887765

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.06  E-value=0.00014  Score=55.79  Aligned_cols=23  Identities=39%  Similarity=0.518  Sum_probs=20.3

Q ss_pred             EEEEccCCCcHHHHHHHHHccCC
Q 024744           35 TVITGFLGAGKSTLVNYILNGKH   57 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~~   57 (263)
                      |+|+||+|||||||+++|++..+
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            57999999999999999987644

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00015  Score=53.18  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.1

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .|+|+|++||||||+-+.|.+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4678899999999999999754

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.01  E-value=6e-05  Score=59.91  Aligned_cols=22  Identities=45%  Similarity=0.560  Sum_probs=19.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ...+++|.+|+|||||+|+|+.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC
T ss_pred             ceEEEECCCCccHHHHHHhhcc
Confidence            3667999999999999999984

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.98  E-value=7.4e-05  Score=61.37  Aligned_cols=38  Identities=24%  Similarity=0.259  Sum_probs=27.2

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~   68 (263)
                      +.|+|+|+|.+||||||+.++|...  ..+.+++++..|.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Ds   42 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDA   42 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCC
Confidence            4589999999999999999998653  2255677888773

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00014  Score=55.43  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=19.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      -+|.|+|+|||||||+-+.|..
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~   41 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEE   41 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3677999999999999999964

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00024  Score=55.34  Aligned_cols=34  Identities=18%  Similarity=0.313  Sum_probs=25.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHccC-------CCCeEEEEecC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGK-------HGKRIAVILNE   67 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~-------~~~~~~ii~~~   67 (263)
                      +|+|+|++|||||||.+.|...-       .+.++.++..|
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D   44 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQD   44 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecc
Confidence            68899999999999999996531       13356666654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00028  Score=53.94  Aligned_cols=22  Identities=36%  Similarity=0.375  Sum_probs=20.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++|+|.|+|||||||..+.|.+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5889999999999999999975

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.00024  Score=55.31  Aligned_cols=23  Identities=39%  Similarity=0.472  Sum_probs=21.0

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .|+|+|.|||||||||+-..|.+
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            47999999999999999999975

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.86  E-value=0.0002  Score=53.57  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=18.8

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      |-++++|+|||||||+-+.|.+
T Consensus         2 p~IvliG~~G~GKSTig~~La~   23 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAK   23 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4567889999999999999864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.81  E-value=0.00031  Score=53.93  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=21.2

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .++|+|.|+|||||||+.+.|.+.
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999999863

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.76  E-value=0.00025  Score=58.55  Aligned_cols=28  Identities=25%  Similarity=0.434  Sum_probs=24.7

Q ss_pred             CCcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           28 DDVSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        28 ~~~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +...+|-++|+|-.+||||||||+|++.
T Consensus        20 ~~~~lP~ivVvG~~ssGKSSliNaLlG~   47 (306)
T d1jwyb_          20 DPLDLPQIVVVGSQSSGKSSVLENIVGR   47 (306)
T ss_dssp             CTTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred             CCCCCCeEEEEeCCCCCHHHHHHHHhCC
Confidence            4567899999999999999999999954

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.75  E-value=0.00034  Score=53.68  Aligned_cols=22  Identities=41%  Similarity=0.632  Sum_probs=19.4

Q ss_pred             EEEEccCCCcHHHHHHHHHccC
Q 024744           35 TVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~~   56 (263)
                      |+|+||+|||||||.++|++..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            5699999999999999998653

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.73  E-value=0.00037  Score=51.90  Aligned_cols=20  Identities=45%  Similarity=0.773  Sum_probs=17.9

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      |+|+|+|||||||+-+.|.+
T Consensus         3 I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67889999999999999964

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.72  E-value=0.00038  Score=52.49  Aligned_cols=21  Identities=38%  Similarity=0.566  Sum_probs=18.5

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      |+|+|+|||||||+.+.|.+.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            679999999999999998753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.00065  Score=56.21  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=27.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc----CCCCeEEEEecC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG----KHGKRIAVILNE   67 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~----~~~~~~~ii~~~   67 (263)
                      +|+|+|.+|||||||-+.|...    ..+.++.+++.|
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D  119 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTD  119 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeee
Confidence            8999999999999998887442    236778888876

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.68  E-value=0.00041  Score=52.88  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=18.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .|+|.|+|||||||+.+.|.+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477999999999999999875

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.61  E-value=0.0005  Score=52.04  Aligned_cols=21  Identities=38%  Similarity=0.596  Sum_probs=18.5

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      |+|+|+|||||||+.+.|.+.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678999999999999999753

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.57  E-value=0.00056  Score=51.24  Aligned_cols=20  Identities=20%  Similarity=0.308  Sum_probs=17.4

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      |+++|++||||||+-+.|.+
T Consensus         5 Iil~G~~GsGKSTia~~LA~   24 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELAR   24 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999964

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.57  E-value=0.0004  Score=54.23  Aligned_cols=31  Identities=26%  Similarity=0.192  Sum_probs=24.2

Q ss_pred             cccCCCcceEEEEEEccCCCcHHHHHHHHHc
Q 024744           24 SHENDDVSVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        24 ~~~~~~~~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      +....+.+--+|.|+|.|||||||+.+.|..
T Consensus        16 r~~~~~~kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          16 RTELRNQRGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             HHHHHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3344444555899999999999999999964

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.00059  Score=58.14  Aligned_cols=40  Identities=20%  Similarity=0.279  Sum_probs=26.8

Q ss_pred             EEEecceeEeCCcccCCCcceEEEEEEccCCCcHHHHHHHH
Q 024744           12 VRIDETTHEFSNSHENDDVSVGVTVITGFLGAGKSTLVNYI   52 (263)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~vv~i~G~~gaGKSTLin~l   52 (263)
                      |+++|- ++|.+....+-..-.+.+|+|++||||||++.+|
T Consensus         6 l~l~NF-ks~~~~~~i~f~~~~l~~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_           6 LELSNF-KSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             EEEESC-SSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHH
T ss_pred             EEEeCe-eeeCCCEEEeCCCCCEEEEECCCCCCHHHHHHHH
Confidence            444553 4555543332222347889999999999999998

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.52  E-value=0.00064  Score=51.81  Aligned_cols=20  Identities=40%  Similarity=0.607  Sum_probs=18.1

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~   53 (263)
                      +|+|+|.+||||||+.+.|-
T Consensus         5 IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            67899999999999998885

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00062  Score=51.30  Aligned_cols=21  Identities=29%  Similarity=0.457  Sum_probs=18.3

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++|+|+|||||||..+.|.+.
T Consensus         3 I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999753

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00089  Score=51.85  Aligned_cols=37  Identities=38%  Similarity=0.467  Sum_probs=28.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGE   70 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~   70 (263)
                      +|+|-|..||||||+++.|.+.  ..|.+..++..+|+.
T Consensus         4 fIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~   42 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGG   42 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCC
Confidence            6889999999999999999763  335555566666654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.49  E-value=0.00066  Score=53.33  Aligned_cols=25  Identities=24%  Similarity=0.243  Sum_probs=21.6

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.|.+.|.|+||+||||+++.+++.
T Consensus        44 ~~~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          44 SMPHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4567899999999999999999753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.49  E-value=0.00067  Score=51.28  Aligned_cols=20  Identities=35%  Similarity=0.426  Sum_probs=17.6

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      |+|.|+|||||||+.+.|.+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45779999999999999975

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.49  E-value=0.00068  Score=51.20  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=18.5

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      |+|.|+|||||||+-+.|.+.
T Consensus         3 I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            678899999999999999753

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.44  E-value=0.00075  Score=51.66  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=19.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -++|+|+|||||||+-+.|.+.
T Consensus         8 rIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4668899999999999999853

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.41  E-value=0.00073  Score=54.04  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHccC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      .+++.|+||+|||||.++|.+..
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~   56 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEET   56 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999997653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.41  E-value=0.00073  Score=53.36  Aligned_cols=25  Identities=28%  Similarity=0.369  Sum_probs=21.6

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..|-+.+.||||+||||+.+.+.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4567889999999999999999764

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.41  E-value=0.0008  Score=51.20  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=17.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .++ |+|+|||||||+-+.|.+
T Consensus         5 rii-l~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           5 RAV-LLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             EEE-EECCTTSSHHHHHHHHHH
T ss_pred             EEE-EECCCCCCHHHHHHHHHH
Confidence            444 789999999999999975

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.36  E-value=0.0011  Score=50.50  Aligned_cols=24  Identities=33%  Similarity=0.416  Sum_probs=21.2

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      -+|+|.|..||||||+++.|.+..
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            389999999999999999997653

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.34  E-value=0.0015  Score=50.13  Aligned_cols=34  Identities=32%  Similarity=0.474  Sum_probs=25.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNE   67 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~   67 (263)
                      +|+|.|..||||||+++.|.+.  ..|.++.++...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~P   37 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFP   37 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            5789999999999999999753  236666555433

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.00092  Score=51.90  Aligned_cols=20  Identities=40%  Similarity=0.637  Sum_probs=18.6

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~   53 (263)
                      +|+|+|.+||||||+.+.|-
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            89999999999999998875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.31  E-value=0.00085  Score=52.89  Aligned_cols=25  Identities=28%  Similarity=0.418  Sum_probs=21.5

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..|-+.+.||||+||||+.+.|.+.
T Consensus        34 ~~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          34 VLDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHhc
Confidence            3466889999999999999999765

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.30  E-value=0.00093  Score=52.43  Aligned_cols=27  Identities=15%  Similarity=0.231  Sum_probs=22.3

Q ss_pred             CcceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           29 DVSVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        29 ~~~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+.|.+++.|++|+||||+++.+++.
T Consensus        30 ~~~~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          30 SANLPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CTTCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCeEEEECCCCCChHHHHHHHHHH
Confidence            344566889999999999999999753

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.29  E-value=0.0011  Score=52.54  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=22.5

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccC
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      ..+.+++.||||+||||++++|++..
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHH
Confidence            45678999999999999999998653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.00096  Score=50.84  Aligned_cols=18  Identities=28%  Similarity=0.423  Sum_probs=17.1

Q ss_pred             EEEEccCCCcHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYI   52 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l   52 (263)
                      ++++|.+|||||||++++
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            679999999999999999

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.21  E-value=0.0023  Score=51.52  Aligned_cols=37  Identities=30%  Similarity=0.306  Sum_probs=31.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc---CCCCeEEEEecCCCc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFGE   70 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~---~~~~~~~ii~~~~g~   70 (263)
                      +++|+|+||+|||||+..++.+   .+|.++.+++.+...
T Consensus        37 l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~~   76 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESV   76 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccch
Confidence            8899999999999999888643   468899999988653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.18  E-value=0.0013  Score=51.04  Aligned_cols=22  Identities=32%  Similarity=0.315  Sum_probs=19.4

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      -+|+|.|||||||||.-+.|.+
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4678899999999999999975

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.17  E-value=0.0014  Score=52.04  Aligned_cols=25  Identities=16%  Similarity=0.190  Sum_probs=21.8

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..+.+.|.|+||+||||+++.+.+.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            4458899999999999999999764

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.03  E-value=0.0018  Score=52.88  Aligned_cols=34  Identities=29%  Similarity=0.245  Sum_probs=25.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc---C--CCCeEEEEecC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG---K--HGKRIAVILNE   67 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~---~--~~~~~~ii~~~   67 (263)
                      +|+|.|.+|||||||-..|...   .  ....+++++-|
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~D   67 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASID   67 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGG
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccC
Confidence            7899999999999998877432   1  13457777765

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.00  E-value=0.0018  Score=50.03  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=18.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~   53 (263)
                      -+|+|+|..||||||+.+.|-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            478999999999999998775

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.95  E-value=0.0022  Score=47.54  Aligned_cols=22  Identities=45%  Similarity=0.709  Sum_probs=20.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++.+.|..|||||||.+.+++.
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCccHHHHHHHHHhh
Confidence            7899999999999999999865

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0034  Score=48.63  Aligned_cols=32  Identities=28%  Similarity=0.416  Sum_probs=24.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEe
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVIL   65 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~   65 (263)
                      +|+|.|+.||||||+++.|.+.  ..|.++.++.
T Consensus         5 lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~   38 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR   38 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            6888899999999999998654  2355564443

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.87  E-value=0.0014  Score=52.31  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=18.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++.+.|+||+||||+++.+++.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            5567899999999999999753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.86  E-value=0.0022  Score=50.89  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=20.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|.|++|+|||||+++++..
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Confidence            57889999999999999999764

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.85  E-value=0.0041  Score=50.26  Aligned_cols=50  Identities=10%  Similarity=0.174  Sum_probs=33.6

Q ss_pred             EeeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhh
Q 024744          157 ITDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLL  225 (263)
Q Consensus       157 i~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l  225 (263)
                      ++.++|+||+|+++.+    ..+.+.+.++..+.               ..+.+|+.++.+..++.+.+
T Consensus        43 Kp~IlVlNK~DLv~~~----~~~~w~~~f~~~~~---------------~~i~isa~~~~~~~~~~~~~   92 (273)
T d1puja_          43 KPRIMLLNKADKADAA----VTQQWKEHFENQGI---------------RSLSINSVNGQGLNQIVPAS   92 (273)
T ss_dssp             SCEEEEEECGGGSCHH----HHHHHHHHHHTTTC---------------CEEECCTTTCTTGGGHHHHH
T ss_pred             CCeEEEEECccCCchH----HHHHHHHHHHhcCC---------------ccceeecccCCCccccchhh
Confidence            4589999999999864    34445555543322               34678898888877666544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.83  E-value=0.0012  Score=52.11  Aligned_cols=54  Identities=13%  Similarity=0.286  Sum_probs=29.5

Q ss_pred             eeEEEEecCCCCCCCCCcchHHHHHHHHHhhcCCCeEEEeecCCCChhhhhccccCCcchhhhhhhhhh
Q 024744          158 TDVVILNKVDLVSPERSGDSLDELEKEIHEINSLAHVIRSVRCQVDLSEVLNCRAYDATHVTRLEGLLE  226 (263)
Q Consensus       158 ~~iivlNK~Dl~~~~~~~~~~~~~~~~l~~~~p~~~i~~~~~~~~~~~~ii~isa~~g~~~~~l~~~l~  226 (263)
                      +.+||+||+||.+..+....+..+.+..+.+  ..             +++.+|+.++.|+++|..++.
T Consensus        43 ~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~--g~-------------~v~~~Sa~~~~gl~~L~~~l~   96 (231)
T d1t9ha2          43 QPIICITKMDLIEDQDTEDTIQAYAEDYRNI--GY-------------DVYLTSSKDQDSLADIIPHFQ   96 (231)
T ss_dssp             EEEEEEECGGGCCCHHHHHHHHHHHHHHHHH--TC-------------CEEECCHHHHTTCTTTGGGGT
T ss_pred             CEEEEEecccccccHHHHHHHHHHHHHHhhc--cc-------------cceeeecCChhHHHHHHHhhc
Confidence            4889999999997642111111222222222  22             345667777777666666554

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.0018  Score=50.47  Aligned_cols=24  Identities=29%  Similarity=0.517  Sum_probs=20.6

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..|-+.+.||||+||||+.+.++.
T Consensus        35 ~~~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          35 NMPHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCchhhHHHHHH
Confidence            456688999999999999999874

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0087  Score=48.15  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .-++++|+||+|||+++..|..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            3567999999999999999973

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.0018  Score=50.44  Aligned_cols=25  Identities=16%  Similarity=0.227  Sum_probs=21.3

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++|.+.+.|++|+||||+++.+++.
T Consensus        34 ~~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          34 KLPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCChhHHHHHHHHH
Confidence            4556789999999999999999754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.73  E-value=0.0024  Score=49.88  Aligned_cols=21  Identities=29%  Similarity=0.279  Sum_probs=18.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      =++++|..|||||||++++..
T Consensus         8 KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            367999999999999999964

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.00053  Score=51.93  Aligned_cols=21  Identities=43%  Similarity=0.450  Sum_probs=19.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~   53 (263)
                      ++.+|+|++||||||++.+|.
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            478899999999999999994

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0024  Score=50.02  Aligned_cols=25  Identities=36%  Similarity=0.388  Sum_probs=22.0

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      ...|+|-|+-||||||+++.|.+..
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999997653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.0022  Score=50.64  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.2

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..|-+.|.|++|+||||+++.+++.
T Consensus        32 ~~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          32 DLPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHh
Confidence            3456789999999999999999764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.60  E-value=0.0019  Score=52.64  Aligned_cols=20  Identities=45%  Similarity=0.649  Sum_probs=18.8

Q ss_pred             EEEEEEccCCCcHHHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYI   52 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l   52 (263)
                      ++.+|+|++||||||+|.+|
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai   44 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAI   44 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHH
Confidence            48899999999999999998

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.59  E-value=0.0057  Score=47.84  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=29.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      ++.|.|+||+|||+|...++.+  ..+.++..+..+..
T Consensus        28 l~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~   65 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVENACANKERAILFAYEES   65 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCC
Confidence            8999999999999999998765  45777888876643

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0041  Score=50.42  Aligned_cols=25  Identities=32%  Similarity=0.437  Sum_probs=22.3

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .+.+|+|+|+.++|||||+|.|++.
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCC
Confidence            4668999999999999999999954

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.51  E-value=0.0034  Score=49.98  Aligned_cols=23  Identities=22%  Similarity=0.247  Sum_probs=20.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .-+.+.||||+|||+|.++|...
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            35789999999999999999754

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.50  E-value=0.0033  Score=47.44  Aligned_cols=21  Identities=24%  Similarity=0.224  Sum_probs=18.8

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++++|-.|||||||++++...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            579999999999999999754

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.48  E-value=0.0037  Score=46.98  Aligned_cols=20  Identities=30%  Similarity=0.328  Sum_probs=18.3

Q ss_pred             EEEEccCCCcHHHHHHHHHc
Q 024744           35 TVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~   54 (263)
                      ++++|-.|||||||++++..
T Consensus         5 ivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            57999999999999999974

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.004  Score=47.26  Aligned_cols=21  Identities=19%  Similarity=0.336  Sum_probs=19.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++.|+|+||+|||||...++.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~   45 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAV   45 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            899999999999999988864

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.29  E-value=0.0044  Score=49.33  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHccC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      -+.+.|+||+|||+|.++|....
T Consensus        44 giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEecCCCCChhHHHHHHHHHc
Confidence            57899999999999999998643

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.005  Score=49.32  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=19.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -+.+.||||+|||++.++|...
T Consensus        47 ~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHHH
Confidence            5789999999999999999754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.17  E-value=0.0067  Score=45.67  Aligned_cols=30  Identities=23%  Similarity=0.306  Sum_probs=22.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~   67 (263)
                      -+.|.|++|+|||||.-.|+..  |.  .++.+|
T Consensus        17 gvli~G~sG~GKS~lal~l~~~--G~--~lvaDD   46 (177)
T d1knxa2          17 GVLLTGRSGIGKSECALDLINK--NH--LFVGDD   46 (177)
T ss_dssp             EEEEEESSSSSHHHHHHHHHTT--TC--EEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHc--CC--ceecCC
Confidence            4679999999999999999854  33  345555

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.11  E-value=0.0054  Score=49.06  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -+.+.||||+|||+|++++...
T Consensus        40 giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          40 GILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEecCCCCCchHHHHHHHHH
Confidence            4789999999999999999864

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=95.10  E-value=0.029  Score=40.30  Aligned_cols=36  Identities=22%  Similarity=0.249  Sum_probs=25.5

Q ss_pred             EEEEEccCCCcHHH-HHHHHHcc-CCCCeEEEEecCCC
Q 024744           34 VTVITGFLGAGKST-LVNYILNG-KHGKRIAVILNEFG   69 (263)
Q Consensus        34 vv~i~G~~gaGKST-Lin~l~~~-~~~~~~~ii~~~~g   69 (263)
                      +-+++||-.||||| |++++-+. ..|+++.++.+..-
T Consensus         4 L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D   41 (139)
T d2b8ta1           4 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID   41 (139)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             EEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEccc
Confidence            45789999999999 55555322 34778877777654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.03  E-value=0.0057  Score=50.28  Aligned_cols=23  Identities=17%  Similarity=0.271  Sum_probs=20.0

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      .-+.+.||||+|||.|.++|.+.
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhhc
Confidence            35678999999999999999764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.01  Score=49.80  Aligned_cols=37  Identities=30%  Similarity=0.337  Sum_probs=26.1

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc----c--CCCCeEEEEecC
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN----G--KHGKRIAVILNE   67 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~----~--~~~~~~~ii~~~   67 (263)
                      +-++++|+|+||+||||++..++.    .  .++.++.+..+.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApT  204 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPT  204 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSS
T ss_pred             cCCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCc
Confidence            346899999999999999866532    2  245566665553

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.89  E-value=0.0075  Score=47.27  Aligned_cols=22  Identities=23%  Similarity=0.543  Sum_probs=19.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+|+|+|..||||||+.+.|.+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.041  Score=43.90  Aligned_cols=89  Identities=17%  Similarity=0.220  Sum_probs=51.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ++.|.|+||+|||||.-.++..  .+|.++.++..+...  ..  .....-+  .-.++++-..+     ...++..+.+
T Consensus        56 itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~--~~--~~a~~~G--vd~d~v~~~~~-----~~~E~~~~~i  124 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL--DP--IYARKLG--VDIDNLLCSQP-----DTGEQALEIC  124 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH--HHHHHTT--CCGGGCEEECC-----SSHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccccc--CH--HHHHHhC--CCHHHEEEecC-----CCHHHHHHHH
Confidence            8999999999999998777553  457788888777542  11  1111111  10111211111     1224455566


Q ss_pred             HHHHHhccCCcEEEEcccCCCCc
Q 024744          112 EQLVQRKERLDHILLETTGLANP  134 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p  134 (263)
                      ..+.. ....++|+++..+..-|
T Consensus       125 ~~l~~-~~~~~liViDSi~al~~  146 (263)
T d1u94a1         125 DALAR-SGAVDVIVVDSVAALTP  146 (263)
T ss_dssp             HHHHH-HTCCSEEEEECGGGCCC
T ss_pred             HHHHh-cCCCCEEEEECcccccc
Confidence            66654 46788998877764433

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.85  E-value=0.0073  Score=45.44  Aligned_cols=30  Identities=30%  Similarity=0.413  Sum_probs=22.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~   67 (263)
                      -+.|.|++|+||||+.-.|+..  |.  .++.+|
T Consensus        16 gvl~~G~sG~GKStlal~l~~~--g~--~lv~DD   45 (176)
T d1kkma_          16 GVLITGDSGVGKSETALELVQR--GH--RLIADD   45 (176)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHT--TC--EEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc--CC--eEEecC
Confidence            4779999999999999998854  33  345555

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.85  E-value=0.0071  Score=46.97  Aligned_cols=21  Identities=29%  Similarity=0.371  Sum_probs=19.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++.|+|+||+|||||...++.
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            899999999999999988864

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.70  E-value=0.026  Score=47.78  Aligned_cols=19  Identities=32%  Similarity=0.517  Sum_probs=16.9

Q ss_pred             EEEEccCCCcHHHHHHHHH
Q 024744           35 TVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~   53 (263)
                      ++++|.||+|||+++..|.
T Consensus        46 ~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHH
Confidence            5789999999999998776

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.69  E-value=0.01  Score=44.36  Aligned_cols=22  Identities=32%  Similarity=0.323  Sum_probs=19.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -+.|.|++|+||||+.-.|+..
T Consensus        17 gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          17 GVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHc
Confidence            4679999999999999888864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.67  E-value=0.016  Score=44.74  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +|+|-|.-||||||+++.|.+.
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            6889999999999999999754

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.64  E-value=0.0091  Score=45.63  Aligned_cols=22  Identities=27%  Similarity=0.430  Sum_probs=19.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .-++++|+||+|||+++..|..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHH
Confidence            3568999999999999999873

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.43  E-value=0.0084  Score=48.10  Aligned_cols=22  Identities=32%  Similarity=0.360  Sum_probs=20.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -+.+.|+||+|||+|++++...
T Consensus        43 giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          43 GVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             EEEEBCCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcchhHHHHHHHH
Confidence            5889999999999999999754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.012  Score=46.00  Aligned_cols=24  Identities=29%  Similarity=0.353  Sum_probs=21.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHHccC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      .+|+|-|.-||||||+++.|.+..
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            478999999999999999998653

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.35  E-value=0.012  Score=46.01  Aligned_cols=21  Identities=29%  Similarity=0.494  Sum_probs=19.2

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++.|.|+||+|||||.-.++.
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            899999999999999988764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.013  Score=49.83  Aligned_cols=34  Identities=24%  Similarity=0.426  Sum_probs=24.2

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEE
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVI   64 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii   64 (263)
                      ...-+.|+|.+|||||++++.++.+  ..|..+.|+
T Consensus        49 ~~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iii   84 (433)
T d1e9ra_          49 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIV   84 (433)
T ss_dssp             GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            3336899999999999999887654  235444443

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.24  E-value=0.075  Score=42.42  Aligned_cols=89  Identities=22%  Similarity=0.253  Sum_probs=52.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ++-|.|++++|||||.-.++..  ..|.+++++..+...  +.  .....-  +.-..+++-..+     ...++..+.+
T Consensus        59 itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~--~~--~~a~~~--Gvd~d~i~~~~~-----~~~E~~~~~~  127 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL--DP--VYARAL--GVNTDELLVSQP-----DNGEQALEIM  127 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--CH--HHHHHT--TCCGGGCEEECC-----SSHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccC--CH--HHHHHh--CCCchhEEEEcC-----CCHHHHHHHH
Confidence            8999999999999999877654  457888888887542  21  122211  110111221111     1224445556


Q ss_pred             HHHHHhccCCcEEEEcccCCCCc
Q 024744          112 EQLVQRKERLDHILLETTGLANP  134 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p  134 (263)
                      +.+.. ....++|+++..+..-|
T Consensus       128 ~~l~~-~~~~~liIiDSi~al~~  149 (268)
T d1xp8a1         128 ELLVR-SGAIDVVVVDSVAALTP  149 (268)
T ss_dssp             HHHHT-TTCCSEEEEECTTTCCC
T ss_pred             HHHHh-cCCCcEEEEeccccccc
Confidence            55553 46789999988775443

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.19  E-value=0.015  Score=46.75  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=21.6

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHcc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...+++|.|+.|.|||||.+.+.+.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3568999999999999999998753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.02  E-value=0.016  Score=44.47  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=26.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc---CCCCeEEEEecCCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG---KHGKRIAVILNEFG   69 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~---~~~~~~~ii~~~~g   69 (263)
                      ++.|.|+||+|||+|.-.++..   ..+.++.++..+..
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~   66 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET   66 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCC
Confidence            8999999999999998766432   22456777777643

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=93.90  E-value=0.017  Score=44.73  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=19.5

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++.|+|+||+|||+|.-.++.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            899999999999999998864

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.90  E-value=0.016  Score=45.56  Aligned_cols=21  Identities=33%  Similarity=0.297  Sum_probs=19.1

Q ss_pred             EEEEEEccCCCcHHHHHHHHH
Q 024744           33 GVTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~   53 (263)
                      .+.+|+|++.+||||+++.+.
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHH
Confidence            478999999999999999983

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.80  E-value=0.017  Score=45.12  Aligned_cols=20  Identities=40%  Similarity=0.399  Sum_probs=18.5

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~   53 (263)
                      +++|+|++.+||||+++.+.
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhH
Confidence            78999999999999999873

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.026  Score=45.19  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=30.5

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      +++.++|.=|+||||+--.|...  ..|+|+.++..|+.
T Consensus         9 ~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~   47 (296)
T d1ihua1           9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (296)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             eEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            47789999999999988777543  45899999999964

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=93.68  E-value=0.017  Score=48.40  Aligned_cols=25  Identities=24%  Similarity=0.246  Sum_probs=21.7

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      .+.+++.||||+|||+|.+.|++..
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~~~  178 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLELC  178 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3589999999999999999997653

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.53  E-value=0.025  Score=43.67  Aligned_cols=21  Identities=33%  Similarity=0.438  Sum_probs=18.9

Q ss_pred             EEEEccCCCcHHHHHHHHHcc
Q 024744           35 TVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~   55 (263)
                      +.|.|++|+|||-|++++...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            679999999999999999764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=93.43  E-value=0.022  Score=45.77  Aligned_cols=33  Identities=24%  Similarity=0.449  Sum_probs=22.1

Q ss_pred             EEEEccCCCcHHHHH-HHH---Hcc--CCCCeEEEEecC
Q 024744           35 TVITGFLGAGKSTLV-NYI---LNG--KHGKRIAVILNE   67 (263)
Q Consensus        35 v~i~G~~gaGKSTLi-n~l---~~~--~~~~~~~ii~~~   67 (263)
                      +.|.|.||+||||.+ .++   +..  .+..++.++...
T Consensus        17 ~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~t   55 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFT   55 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESS
T ss_pred             EEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCc
Confidence            467799999999764 443   322  234578887764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.33  E-value=0.14  Score=40.83  Aligned_cols=89  Identities=16%  Similarity=0.157  Sum_probs=52.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCCcccccchhhhhcCCCCcceeeeeeecCcceEeecchhHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFGEEIGVERAMINEGEGGALVEEWVELANGCICCTVKHSLVQAL  111 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g~t~~~d~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~l  111 (263)
                      ++.|.|++|+|||||.-.++..  ..|.++.++..+..-  +.+  ....-+  .-.++++-..     +...++..+.+
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~--~~e--~a~~~G--vD~d~il~~~-----~~~~E~~~~~~  130 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHAL--DPD--YAKKLG--VDTDSLLVSQ-----PDTGEQALEIA  130 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCC--CHH--HHHHHT--CCGGGCEEEC-----CSSHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccC--CHH--HHHHhC--CCHHHeEEec-----CCCHHHHHHHH
Confidence            8999999999999997666543  457777777777532  211  111100  0011222111     12234555566


Q ss_pred             HHHHHhccCCcEEEEcccCCCCc
Q 024744          112 EQLVQRKERLDHILLETTGLANP  134 (263)
Q Consensus       112 ~~~~~~~~~~d~ilie~~G~~~p  134 (263)
                      +.+.. ....++|+++..+..-|
T Consensus       131 ~~l~~-~~~~~liIiDSi~al~~  152 (269)
T d1mo6a1         131 DMLIR-SGALDIVVIDSVAALVP  152 (269)
T ss_dssp             HHHHH-TTCEEEEEEECSTTCCC
T ss_pred             HHHHh-cCCCCEEEEeccccccc
Confidence            66554 46789999988876655

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.27  E-value=0.038  Score=43.88  Aligned_cols=40  Identities=20%  Similarity=0.266  Sum_probs=32.2

Q ss_pred             cceEEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           30 VSVGVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        30 ~~~~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      ....+++++|.=|+||||+--.|...  ..|+++.++..|+.
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~   59 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA   59 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            34568999999999999987777432  35899999999975

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=93.21  E-value=0.012  Score=48.67  Aligned_cols=21  Identities=33%  Similarity=0.360  Sum_probs=18.6

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      -+.+.|+||+|||||.+++..
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            478999999999999999853

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.20  E-value=0.037  Score=45.75  Aligned_cols=24  Identities=25%  Similarity=0.324  Sum_probs=21.0

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      +-.|.|-|.-|+||||+++.|.+.
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHH
Confidence            346889999999999999999875

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.08  E-value=0.049  Score=43.07  Aligned_cols=37  Identities=32%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      ..|+|.|.=|+||||+.-.|...  ..|+++.+|-.|++
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            46788999999999998777443  45899999999975

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.94  E-value=0.033  Score=45.65  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=20.8

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ...+.++||+|+|||.|.+.|.+.
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHhh
Confidence            347889999999999999999754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.03  Score=43.45  Aligned_cols=21  Identities=24%  Similarity=0.282  Sum_probs=19.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++.|+|+||+|||+|.-.++.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            899999999999999988864

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=92.76  E-value=0.042  Score=38.66  Aligned_cols=35  Identities=26%  Similarity=0.294  Sum_probs=25.7

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCCCeEEEEecC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHGKRIAVILNE   67 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~   67 (263)
                      ..+.+|.++.|||||+++-.++. ..+.++.++.+-
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~~-~~~~~vli~~P~   42 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAYA-AQGYKVLVLNPS   42 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHHH-TTTCCEEEEESC
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHH-HcCCcEEEEcCh
Confidence            46778999999999998866543 336677666664

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.032  Score=44.16  Aligned_cols=36  Identities=22%  Similarity=0.096  Sum_probs=26.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc------------CCCCeEEEEecCCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG------------KHGKRIAVILNEFG   69 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~------------~~~~~~~ii~~~~g   69 (263)
                      +++|+|.+|+|||||+-.|+..            ..+.++.++..+..
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~   78 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP   78 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccch
Confidence            7889999999999999877432            12456777777654

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.69  E-value=0.032  Score=42.76  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=20.3

Q ss_pred             ceE-EEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVG-VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~-vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++| .+.+.|++|+||||+.+.+++
T Consensus        22 ~l~h~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          22 RGHHALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             CCCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcCeEEEEECCCCCcHHHHHHHHHH
Confidence            344 588999999999999998874

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.56  E-value=0.033  Score=43.53  Aligned_cols=21  Identities=19%  Similarity=0.474  Sum_probs=18.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .+.|.|++|+||||+.+.+++
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            578999999999999998864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.53  E-value=0.04  Score=45.49  Aligned_cols=37  Identities=27%  Similarity=0.328  Sum_probs=26.3

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHccC--CCCeEEEEecCC
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILNGK--HGKRIAVILNEF   68 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~~~--~~~~~~ii~~~~   68 (263)
                      .+-.|.|-|.-||||||+++.|.+..  .+.++ ++..+|
T Consensus         4 ~~lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v-~~~~EP   42 (331)
T d1osna_           4 GVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRI-LLIGEP   42 (331)
T ss_dssp             EEEEEEEEESSSSCTTHHHHHHHHTTTTSGGGE-EEECCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHhhcCCce-EEEeCc
Confidence            34468899999999999999998652  23333 444454

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.31  E-value=0.044  Score=45.18  Aligned_cols=34  Identities=26%  Similarity=0.258  Sum_probs=23.0

Q ss_pred             EEEEEccCCCcHHHHHHHHHccCCCCeEEEEecCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNGKHGKRIAVILNEF   68 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~~~~~~~~ii~~~~   68 (263)
                      .|.|-|.-||||||+++.|.+...+..+ ++..+|
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~~~~v-~~~~EP   39 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGSRDDI-VYVPEP   39 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC----CCE-EEECCC
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhCCCCe-EEeccc
Confidence            5889999999999999999765433333 334554

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.08  E-value=0.066  Score=42.85  Aligned_cols=37  Identities=24%  Similarity=0.306  Sum_probs=29.9

Q ss_pred             EEEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           33 GVTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      ..|+|.|.=|+||||+.-.|...  ..|+|+.+|-.|++
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            45678999999999988777432  45999999999975

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.98  E-value=0.044  Score=38.18  Aligned_cols=20  Identities=20%  Similarity=0.205  Sum_probs=18.3

Q ss_pred             EEEEEccCCCcHHHHHHHHH
Q 024744           34 VTVITGFLGAGKSTLVNYIL   53 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~   53 (263)
                      .+.++|.+||||||+-++|.
T Consensus         8 ~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           8 SIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             EEEECTTCCSCHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHH
Confidence            67899999999999999994

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.92  E-value=0.076  Score=40.61  Aligned_cols=37  Identities=16%  Similarity=0.312  Sum_probs=28.3

Q ss_pred             EEEEEE-ccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           33 GVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        33 ~vv~i~-G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      .+|+|+ |.-|+||||+--.|...  ..|.++.++..|+.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~   41 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADIT   41 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            455555 89999999999887543  45889999987753

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=91.87  E-value=0.041  Score=47.30  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=19.6

Q ss_pred             EEEEEEccCCCcHHHHHHHHHc
Q 024744           33 GVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        33 ~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      .=|.++||+|+|||-|.++|.+
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999975

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.85  E-value=0.034  Score=45.04  Aligned_cols=33  Identities=21%  Similarity=0.210  Sum_probs=21.4

Q ss_pred             EEEEccCCCcHHHHH-HHH---Hcc--CCCCeEEEEecC
Q 024744           35 TVITGFLGAGKSTLV-NYI---LNG--KHGKRIAVILNE   67 (263)
Q Consensus        35 v~i~G~~gaGKSTLi-n~l---~~~--~~~~~~~ii~~~   67 (263)
                      +.|.|++||||||.+ .++   +..  .+..++.++...
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t   65 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFT   65 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESS
T ss_pred             EEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEecc
Confidence            557899999999765 333   322  233567777664

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=91.82  E-value=0.038  Score=42.17  Aligned_cols=27  Identities=22%  Similarity=0.176  Sum_probs=22.3

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccCCC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGKHG   58 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~~~   58 (263)
                      ...+++.||+++|||+|.++|+....|
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~l~G   79 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHFIQG   79 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHhCC
Confidence            348899999999999999999865433

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=91.75  E-value=0.053  Score=44.51  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.9

Q ss_pred             EEEEEccCCCcHHHHHHHHHc
Q 024744           34 VTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ++.+.|+||+|||.|.+.|..
T Consensus       125 ~~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            677789999999999999974

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.94  E-value=0.13  Score=36.28  Aligned_cols=36  Identities=25%  Similarity=0.132  Sum_probs=26.4

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEFG   69 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~g   69 (263)
                      +.+++||-.|||||-|-+.+..  ..|+++.++.+..-
T Consensus         4 L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~D   41 (133)
T d1xbta1           4 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD   41 (133)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred             EEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEecccc
Confidence            4578999999999987665543  34777877776643

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.76  E-value=0.069  Score=40.31  Aligned_cols=34  Identities=24%  Similarity=0.180  Sum_probs=27.5

Q ss_pred             EEEEEcc-CCCcHHHHHHHHHcc--CCCCeEEEEecC
Q 024744           34 VTVITGF-LGAGKSTLVNYILNG--KHGKRIAVILNE   67 (263)
Q Consensus        34 vv~i~G~-~gaGKSTLin~l~~~--~~~~~~~ii~~~   67 (263)
                      -+.|+|- +|+||||+--.|...  ..|.|+.++..+
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d   39 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPV   39 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECcc
Confidence            4679998 599999999888664  459999998755

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.71  E-value=0.074  Score=42.42  Aligned_cols=25  Identities=16%  Similarity=0.155  Sum_probs=21.4

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHccC
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNGK   56 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~~   56 (263)
                      ...+.+.|++++|||+|++.|...-
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4478899999999999999997643

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.12  E-value=0.18  Score=35.99  Aligned_cols=35  Identities=29%  Similarity=0.282  Sum_probs=25.8

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744           34 VTVITGFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~   68 (263)
                      +-+|+||-.|||||-+-+.+..  ..|+++.++.+..
T Consensus         9 l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~   45 (141)
T d1xx6a1           9 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI   45 (141)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred             EEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEecc
Confidence            5678999999999987666543  3477887777764

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=87.65  E-value=0.15  Score=42.50  Aligned_cols=24  Identities=17%  Similarity=0.304  Sum_probs=20.3

Q ss_pred             eEEEEEEccCCCcHHHHHHHHHcc
Q 024744           32 VGVTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        32 ~~vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ..-+.++||+|+|||-|.++|...
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHhh
Confidence            335889999999999999999653

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=87.43  E-value=0.17  Score=41.26  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.7

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      ++.++|++|+|||.+.+.|.+.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            6789999999999999999754

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.03  E-value=0.3  Score=37.04  Aligned_cols=36  Identities=19%  Similarity=0.398  Sum_probs=27.8

Q ss_pred             EEEEEE-ccCCCcHHHHHHHHHcc--CCCCeEEEEecCC
Q 024744           33 GVTVIT-GFLGAGKSTLVNYILNG--KHGKRIAVILNEF   68 (263)
Q Consensus        33 ~vv~i~-G~~gaGKSTLin~l~~~--~~~~~~~ii~~~~   68 (263)
                      .+|+|+ +.-|+||||+--.|...  ..|.++.++..|+
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~   41 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            356666 78999999999888543  4588999998764

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=85.41  E-value=0.16  Score=34.97  Aligned_cols=34  Identities=29%  Similarity=0.300  Sum_probs=20.4

Q ss_pred             EEEEEccCCCcHHHHH-HHHHcc--CCCCeEEEEecC
Q 024744           34 VTVITGFLGAGKSTLV-NYILNG--KHGKRIAVILNE   67 (263)
Q Consensus        34 vv~i~G~~gaGKSTLi-n~l~~~--~~~~~~~ii~~~   67 (263)
                      .++|.+++|||||... ..++..  ..+.++.++.+.
T Consensus         9 ~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p~   45 (140)
T d1yksa1           9 TTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPT   45 (140)
T ss_dssp             EEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeecc
Confidence            4568889999999443 343322  235555555543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=82.00  E-value=0.39  Score=38.44  Aligned_cols=22  Identities=27%  Similarity=0.276  Sum_probs=19.3

Q ss_pred             EEEEEccCCCcHHHHHHHHHcc
Q 024744           34 VTVITGFLGAGKSTLVNYILNG   55 (263)
Q Consensus        34 vv~i~G~~gaGKSTLin~l~~~   55 (263)
                      -.+|.|.+|+|||||+..++.+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            5789999999999999998763

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=81.22  E-value=0.49  Score=35.50  Aligned_cols=24  Identities=8%  Similarity=-0.218  Sum_probs=21.2

Q ss_pred             ceEEEEEEccCCCcHHHHHHHHHc
Q 024744           31 SVGVTVITGFLGAGKSTLVNYILN   54 (263)
Q Consensus        31 ~~~vv~i~G~~gaGKSTLin~l~~   54 (263)
                      ..+-+.+.|++|+||||+...+.+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~   37 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPE   37 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457889999999999999998865

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=80.93  E-value=0.58  Score=34.51  Aligned_cols=33  Identities=21%  Similarity=0.251  Sum_probs=20.3

Q ss_pred             EEEEccCCCcHHHHHHHHHcc---CCCCeEEEEecC
Q 024744           35 TVITGFLGAGKSTLVNYILNG---KHGKRIAVILNE   67 (263)
Q Consensus        35 v~i~G~~gaGKSTLin~l~~~---~~~~~~~ii~~~   67 (263)
                      +++.++.|+|||...-.++..   ..+.++.++.+.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~   61 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT   61 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCc
Confidence            357799999999743333221   235667666653

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=80.44  E-value=0.26  Score=39.03  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=22.1

Q ss_pred             EEEEEccCCCcHHH-HHHHHHcc--CCCCeEEEEec
Q 024744           34 VTVITGFLGAGKST-LVNYILNG--KHGKRIAVILN   66 (263)
Q Consensus        34 vv~i~G~~gaGKST-Lin~l~~~--~~~~~~~ii~~   66 (263)
                      .+++.+++|||||+ ++-.++..  ..+.++.++.+
T Consensus        11 ~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~P   46 (305)
T d2bmfa2          11 LTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAP   46 (305)
T ss_dssp             EEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEES
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEcc
Confidence            57789999999996 44344332  23666777765