Citrus Sinensis ID: 024753

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
MSSSYLSLSTSLKNSRICFDIYAEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWKGF
ccccEEEEEcccccccEEEEEccccccccccccccEEEEEEEEEEcEEEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEccEEEEHHHHHHHcccHHHHHHccccccccccccEEEccccHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHcccccc
ccccEEEEcccccccEEEEEcccHHHHHHcccccccEEEEEcccccEEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEEcccEEcHHHHEEEcccHHHHHHHccccHHccccEEEEccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHcHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccc
MSSSYLSLSTSLKNSRICFDIYAEITdrqlknnddfVWAIevpltgkfiidvefldlkiapsdggepcsiwaegitqkrsNATALASLGRMLtegihtdiiinasngstgaHRAVLAARSpvfrsmfshdlkekelstidipdmSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADkydicdlkeaCHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWKGF
MSSSYLSLSTSLKNSRICFDIYAEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWKGF
MsssylslstslknsRICFDIYAEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWKGF
************KNSRICFDIYAEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAW***
**SSYLSLSTSLKNSRICF***********KNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGG********************ASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWKGF
**********SLKNSRICFDIYAEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWKGF
****YLSLSTSLKNSRICFDIYAEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLG*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSSYLSLSTSLKNSRICFDIYAEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWKGF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query263 2.2.26 [Sep-21-2011]
Q680K8329 BTB/POZ domain-containing yes no 0.920 0.735 0.743 1e-108
Q9XHZ8326 BTB/POZ domain-containing no no 0.908 0.733 0.558 5e-73
Q6YCH2370 TD and POZ domain-contain yes no 0.695 0.494 0.285 4e-16
Q717B3365 TD and POZ domain-contain no no 0.657 0.473 0.301 8e-16
Q94420395 Protein maternal effect l yes no 0.631 0.420 0.333 2e-15
Q717B4365 TD and POZ domain-contain no no 0.642 0.463 0.314 5e-15
Q9LQ95207 BTB/POZ domain-containing no no 0.634 0.806 0.298 8e-14
Q6YCH1340 TD and POZ domain-contain no no 0.520 0.402 0.311 1e-13
Q717B2364 TD and POZ domain-contain no no 0.517 0.373 0.302 6e-13
P34371410 BTB and MATH domain-conta no no 0.638 0.409 0.304 9e-13
>sp|Q680K8|Y1576_ARATH BTB/POZ domain-containing protein At1g55760 OS=Arabidopsis thaliana GN=At1g55760 PE=2 SV=1 Back     alignment and function desciption
 Score =  391 bits (1004), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 180/242 (74%), Positives = 213/242 (88%)

Query: 22  YAEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSN 81
           + E+ D+++K N+DF+W IEVPLTGK IIDVEFLDLK+   D GE  SIWA G T+ +S 
Sbjct: 88  HPEVIDKRIKTNEDFIWTIEVPLTGKIIIDVEFLDLKVLSQDSGELYSIWANGSTENQSQ 147

Query: 82  ATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDI 141
            TA+ SLGRMLTE I+TDI INAS+GS GAHRAVLAARSPVFRSMF HDLKEKELS I++
Sbjct: 148 VTAVTSLGRMLTESIYTDITINASDGSIGAHRAVLAARSPVFRSMFLHDLKEKELSEINV 207

Query: 142 PDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNV 201
            DM +DACQAFLSYIYGNI++E+FL HRLALL+AA+KYDI DLKEACH SL++DIDTKNV
Sbjct: 208 LDMPLDACQAFLSYIYGNIQNEDFLIHRLALLQAAEKYDIADLKEACHLSLLDDIDTKNV 267

Query: 202 LERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWK 261
           LERLQNAYLYQLP+LK+SCMRYLVKFGKIF+IRD+F++F+QCADR+LI+E+FHEVL  WK
Sbjct: 268 LERLQNAYLYQLPELKASCMRYLVKFGKIFEIRDEFNIFMQCADRDLISEIFHEVLSTWK 327

Query: 262 GF 263
           GF
Sbjct: 328 GF 329
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9XHZ8|Y1178_ARATH BTB/POZ domain-containing protein At1g21780 OS=Arabidopsis thaliana GN=At1g21780 PE=1 SV=1 Back     alignment and function description
>sp|Q6YCH2|TDPZ4_MOUSE TD and POZ domain-containing protein 4 OS=Mus musculus GN=Tdpoz4 PE=2 SV=2 Back     alignment and function description
>sp|Q717B3|TDPZ1_MOUSE TD and POZ domain-containing protein 1 OS=Mus musculus GN=Tdpoz1 PE=2 SV=2 Back     alignment and function description
>sp|Q94420|MEL26_CAEEL Protein maternal effect lethal 26 OS=Caenorhabditis elegans GN=mel-26 PE=1 SV=2 Back     alignment and function description
>sp|Q717B4|TDPZ3_MOUSE TD and POZ domain-containing protein 3 OS=Mus musculus GN=Tdpoz3 PE=2 SV=2 Back     alignment and function description
>sp|Q9LQ95|Y1164_ARATH BTB/POZ domain-containing protein At1g01640 OS=Arabidopsis thaliana GN=At1g01640 PE=1 SV=1 Back     alignment and function description
>sp|Q6YCH1|TDPZ5_MOUSE TD and POZ domain-containing protein 5 OS=Mus musculus GN=Tdpoz5 PE=2 SV=1 Back     alignment and function description
>sp|Q717B2|TDPZ2_MOUSE TD and POZ domain-containing protein 2 OS=Mus musculus GN=Tdpoz2 PE=2 SV=2 Back     alignment and function description
>sp|P34371|BAT42_CAEEL BTB and MATH domain-containing protein 42 OS=Caenorhabditis elegans GN=bath-42 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query263
225462070328 PREDICTED: BTB/POZ domain-containing pro 0.923 0.740 0.831 1e-118
224056863330 predicted protein [Populus trichocarpa] 0.920 0.733 0.818 1e-113
255585057248 protein binding protein, putative [Ricin 0.920 0.975 0.809 1e-113
356566311328 PREDICTED: BTB/POZ domain-containing pro 0.920 0.737 0.805 1e-112
356527187328 PREDICTED: BTB/POZ domain-containing pro 0.920 0.737 0.797 1e-112
449444010327 PREDICTED: BTB/POZ domain-containing pro 0.916 0.737 0.780 1e-109
220702723332 BTB/POZ domain-containing protein [Mirab 0.923 0.731 0.753 1e-108
15222771329 BTB/POZ domain-containing protein [Arabi 0.920 0.735 0.743 1e-106
357460301330 Speckle-type POZ protein-like A [Medicag 0.920 0.733 0.773 1e-106
388522999328 unknown [Lotus japonicus] 0.920 0.737 0.764 1e-106
>gi|225462070|ref|XP_002276318.1| PREDICTED: BTB/POZ domain-containing protein At1g55760 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  429 bits (1104), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/243 (83%), Positives = 225/243 (92%)

Query: 21  IYAEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRS 80
           ++ EITD+QLKNNDDFVWAIEVPLTGKFI+DVEFLDLK +  +GGEPCSIWAEG  QKRS
Sbjct: 86  VHPEITDKQLKNNDDFVWAIEVPLTGKFIVDVEFLDLKTSSPNGGEPCSIWAEGFAQKRS 145

Query: 81  NATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTID 140
           + TALASLGRML+E IHTDIIINAS+GS GAHRAVLA+ SPVFRSMFSHDLKEKELST++
Sbjct: 146 STTALASLGRMLSENIHTDIIINASDGSIGAHRAVLASISPVFRSMFSHDLKEKELSTVN 205

Query: 141 IPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKN 200
           I DMSI+ACQAFL+YIYGNI+H+EFL HRL LLRAADKYDI DLKEACH+SL+EDIDTKN
Sbjct: 206 ISDMSIEACQAFLNYIYGNIQHDEFLIHRLPLLRAADKYDIEDLKEACHESLLEDIDTKN 265

Query: 201 VLERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAW 260
           VLERLQNA LYQL KLK++C+RYLVKFGKIFDIRDDF+ FLQCADR+LIAEVFHEVL AW
Sbjct: 266 VLERLQNASLYQLSKLKTACLRYLVKFGKIFDIRDDFNAFLQCADRDLIAEVFHEVLTAW 325

Query: 261 KGF 263
           KGF
Sbjct: 326 KGF 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056863|ref|XP_002299061.1| predicted protein [Populus trichocarpa] gi|222846319|gb|EEE83866.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255585057|ref|XP_002533236.1| protein binding protein, putative [Ricinus communis] gi|223526945|gb|EEF29147.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356566311|ref|XP_003551376.1| PREDICTED: BTB/POZ domain-containing protein At1g55760-like [Glycine max] Back     alignment and taxonomy information
>gi|356527187|ref|XP_003532194.1| PREDICTED: BTB/POZ domain-containing protein At1g55760-like [Glycine max] Back     alignment and taxonomy information
>gi|449444010|ref|XP_004139768.1| PREDICTED: BTB/POZ domain-containing protein At1g55760-like [Cucumis sativus] gi|449529700|ref|XP_004171836.1| PREDICTED: BTB/POZ domain-containing protein At1g55760-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|220702723|gb|ACL81160.1| BTB/POZ domain-containing protein [Mirabilis jalapa] Back     alignment and taxonomy information
>gi|15222771|ref|NP_175972.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|75271590|sp|Q680K8.1|Y1576_ARATH RecName: Full=BTB/POZ domain-containing protein At1g55760 gi|51969392|dbj|BAD43388.1| unknown protein [Arabidopsis thaliana] gi|51969860|dbj|BAD43622.1| unknown protein [Arabidopsis thaliana] gi|63147370|gb|AAY34158.1| At1g55760 [Arabidopsis thaliana] gi|332195173|gb|AEE33294.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357460301|ref|XP_003600432.1| Speckle-type POZ protein-like A [Medicago truncatula] gi|355489480|gb|AES70683.1| Speckle-type POZ protein-like A [Medicago truncatula] Back     alignment and taxonomy information
>gi|388522999|gb|AFK49561.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query263
TAIR|locus:2020522329 AT1G55760 "AT1G55760" [Arabido 0.920 0.735 0.743 7.4e-98
TAIR|locus:2036962326 AT1G21780 [Arabidopsis thalian 0.901 0.726 0.563 2.4e-67
MGI|MGI:3027904370 Tdpoz4 "TD and POZ domain cont 0.695 0.494 0.285 4.7e-21
MGI|MGI:3027903365 Tdpoz3 "TD and POZ domain cont 0.638 0.460 0.318 1.6e-17
WB|WBGene00003209395 mel-26 [Caenorhabditis elegans 0.631 0.420 0.333 1.4e-16
UNIPROTKB|Q94420395 mel-26 "Protein maternal effec 0.631 0.420 0.333 1.4e-16
TAIR|locus:2198140207 AT1G01640 [Arabidopsis thalian 0.665 0.845 0.302 1.8e-16
UNIPROTKB|P34371410 bath-42 "BTB and MATH domain-c 0.631 0.404 0.307 9e-15
ZFIN|ZDB-GENE-050320-3394 spopla "speckle-type POZ prote 0.513 0.342 0.311 7.9e-14
UNIPROTKB|Q0IHH9374 spop-b "Speckle-type POZ prote 0.513 0.360 0.311 2.9e-13
TAIR|locus:2020522 AT1G55760 "AT1G55760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 972 (347.2 bits), Expect = 7.4e-98, P = 7.4e-98
 Identities = 180/242 (74%), Positives = 213/242 (88%)

Query:    22 YAEITDRQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSN 81
             + E+ D+++K N+DF+W IEVPLTGK IIDVEFLDLK+   D GE  SIWA G T+ +S 
Sbjct:    88 HPEVIDKRIKTNEDFIWTIEVPLTGKIIIDVEFLDLKVLSQDSGELYSIWANGSTENQSQ 147

Query:    82 ATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDI 141
              TA+ SLGRMLTE I+TDI INAS+GS GAHRAVLAARSPVFRSMF HDLKEKELS I++
Sbjct:   148 VTAVTSLGRMLTESIYTDITINASDGSIGAHRAVLAARSPVFRSMFLHDLKEKELSEINV 207

Query:   142 PDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNV 201
              DM +DACQAFLSYIYGNI++E+FL HRLALL+AA+KYDI DLKEACH SL++DIDTKNV
Sbjct:   208 LDMPLDACQAFLSYIYGNIQNEDFLIHRLALLQAAEKYDIADLKEACHLSLLDDIDTKNV 267

Query:   202 LERLQNAYLYQLPKLKSSCMRYLVKFGKIFDIRDDFSVFLQCADRELIAEVFHEVLGAWK 261
             LERLQNAYLYQLP+LK+SCMRYLVKFGKIF+IRD+F++F+QCADR+LI+E+FHEVL  WK
Sbjct:   268 LERLQNAYLYQLPELKASCMRYLVKFGKIFEIRDEFNIFMQCADRDLISEIFHEVLSTWK 327

Query:   262 GF 263
             GF
Sbjct:   328 GF 329
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2036962 AT1G21780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:3027904 Tdpoz4 "TD and POZ domain containing 4" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
MGI|MGI:3027903 Tdpoz3 "TD and POZ domain containing 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
WB|WBGene00003209 mel-26 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q94420 mel-26 "Protein maternal effect lethal 26" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2198140 AT1G01640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P34371 bath-42 "BTB and MATH domain-containing protein 42" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050320-3 spopla "speckle-type POZ protein-like a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IHH9 spop-b "Speckle-type POZ protein B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q680K8Y1576_ARATHNo assigned EC number0.74380.92010.7355yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
pfam00651101 pfam00651, BTB, BTB/POZ domain 3e-17
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-16
PHA03098 534 PHA03098, PHA03098, kelch-like protein; Provisiona 5e-05
PHA02713 557 PHA02713, PHA02713, hypothetical protein; Provisio 0.003
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information 
 Score = 74.6 bits (184), Expect = 3e-17
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 11/109 (10%)

Query: 88  LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSID 147
           L  +   G   D+ +   +    AH+AVLAA SP F+++F+ + +      I + D+S +
Sbjct: 1   LNELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTGNKE----VEITLEDVSPE 56

Query: 148 ACQAFLSYIYG---NIEHEEFLTHRLALLRAADKYDICDLKEACHDSLV 193
             +A L +IY     I  E        LL  ADK  I  L + C + L+
Sbjct: 57  DFEALLEFIYTGKLEITEEN----VDDLLALADKLQIPALIDKCEEFLI 101

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 263
PHA02713 557 hypothetical protein; Provisional 99.97
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.97
PHA02790 480 Kelch-like protein; Provisional 99.96
PHA03098 534 kelch-like protein; Provisional 99.95
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.93
KOG4591280 consensus Uncharacterized conserved protein, conta 99.85
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.84
KOG2075 521 consensus Topoisomerase TOP1-interacting protein B 99.82
KOG4682 488 consensus Uncharacterized conserved protein, conta 99.78
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.73
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.67
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.82
KOG0511516 consensus Ankyrin repeat protein [General function 98.62
KOG2838401 consensus Uncharacterized conserved protein, conta 98.52
KOG2838 401 consensus Uncharacterized conserved protein, conta 98.34
KOG2716230 consensus Polymerase delta-interacting protein PDI 98.17
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 98.13
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.91
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.15
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 97.12
KOG3473112 consensus RNA polymerase II transcription elongati 97.03
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 96.82
KOG0511 516 consensus Ankyrin repeat protein [General function 96.65
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 96.57
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 96.55
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 96.04
KOG1778 319 consensus CREB binding protein/P300 and related TA 96.02
KOG2714 465 consensus SETA binding protein SB1 and related pro 95.78
KOG1665 302 consensus AFH1-interacting protein FIP2, contains 95.72
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 92.09
KOG2715210 consensus Uncharacterized conserved protein, conta 91.87
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 90.61
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information 
Probab=99.97  E-value=2.9e-30  Score=242.93  Aligned_cols=166  Identities=19%  Similarity=0.330  Sum_probs=153.2

Q ss_pred             ccCChHHHHHHHHHHhhCCCcccEEEEec-CeEEehhHHHHhhcChhHHhhhcCCCCcCC-cceEEeCCCCHHHHHHHHH
Q 024753           77 QKRSNATALASLGRMLTEGIHTDIIINAS-NGSTGAHRAVLAARSPVFRSMFSHDLKEKE-LSTIDIPDMSIDACQAFLS  154 (263)
Q Consensus        77 ~~~~~~~l~~~l~~l~~~~~~~Dv~~~v~-~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~-~~~i~l~~~~~~~f~~lL~  154 (263)
                      .+.|...+++.|++|++++.+|||++.++ |++|+|||.|||++|+||++||.++++|.. +++|.|.++++++|+.+|+
T Consensus         5 ~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~   84 (557)
T PHA02713          5 DIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQ   84 (557)
T ss_pred             hhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHH
Confidence            35677889999999999999999999997 899999999999999999999999999864 7899999999999999999


Q ss_pred             hhcCCCCccccHHHHHHHHHHHHhhCcHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhcc
Q 024753          155 YIYGNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFDI  233 (263)
Q Consensus       155 fiYt~~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~~  233 (263)
                      |+||+. .+  .++++++|.+|++|+++.|++.|+++|.++++++||+.++.+|..+.+..|.+.|.+|+. ||.++.+ 
T Consensus        85 y~Yt~~-i~--~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~-  160 (557)
T PHA02713         85 YLYNRH-IS--SMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLIT-  160 (557)
T ss_pred             HhcCCC-CC--HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhC-
Confidence            999985 33  489999999999999999999999999999999999999999999999999999999999 9999998 


Q ss_pred             ccchHHHHhhCcHHHH
Q 024753          234 RDDFSVFLQCADRELI  249 (263)
Q Consensus       234 ~~~~~~fl~~~~~~l~  249 (263)
                         .++|++++..+|.
T Consensus       161 ---~~ef~~L~~~~l~  173 (557)
T PHA02713        161 ---TDAFKKTVFEILF  173 (557)
T ss_pred             ---ChhhhhCCHHHHH
Confidence               8889887755554

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 2e-12
4eoz_A145 Crystal Structure Of The Spop Btb Domain Complexed 5e-12
3htm_A172 Structures Of Spop-Substrate Complexes: Insights In 3e-07
2vkp_A109 Crystal Structure Of Btb Domain From Btbd6 Length = 5e-04
1r28_A127 Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) B 5e-04
4ap2_A297 Crystal Structure Of The Human Klhl11-cul3 Complex 6e-04
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure 
Iteration: 1

 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 75/138 (54%), Gaps = 3/138 (2%)
Query: 88  LGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSID 147
           LG +      TD  +  +     AH+A+LAARSPVF +MF H+++E + + ++I D+  +
Sbjct: 165 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPE 224
Query: 148 ACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVLERLQ 206
             +  + +IY G   + + +     LL AADKY +  LK  C D+L  ++  +N  E L 
Sbjct: 225 VFKEMMCFIYTGKAPNLDKMADD--LLAAADKYALERLKVMCEDALCSNLSVENAAEILI 282
Query: 207 NAYLYQLPKLKSSCMRYL 224
            A L+   +LK+  + ++
Sbjct: 283 LADLHSADQLKTQAVDFI 300
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 Back     alignment and structure
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopbtb3-Box Length = 172 Back     alignment and structure
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6 Length = 109 Back     alignment and structure
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb Domain To 2.2 Angstrom Length = 127 Back     alignment and structure
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 297 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 4e-40
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 4e-39
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 1e-37
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 8e-25
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 2e-23
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 6e-21
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 1e-18
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 4e-18
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 6e-18
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 1e-16
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 2e-16
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 3e-16
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 4e-16
3b84_A119 Zinc finger and BTB domain-containing protein 48; 7e-16
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 1e-15
2vpk_A116 Myoneurin; transcription regulation, transcription 5e-15
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 3e-13
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 4e-13
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 4e-12
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 1e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
 Score =  135 bits (343), Expect = 4e-40
 Identities = 43/144 (29%), Positives = 75/144 (52%), Gaps = 5/144 (3%)

Query: 85  LASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDM 144
              LG +      TD  +  +     AH+A+LAARSPVF +MF H+++E + + ++I D+
Sbjct: 22  ADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDV 81

Query: 145 SIDACQAFLSYIY-GNIEH-EEFLTHRLALLRAADKYDICDLKEACHDSLVEDIDTKNVL 202
             +  +  + +IY G   + ++       LL AADKY +  LK  C D+L  ++  +N  
Sbjct: 82  EPEVFKEMMCFIYTGKAPNLDKMADD---LLAAADKYALERLKVMCEDALCSNLSVENAA 138

Query: 203 ERLQNAYLYQLPKLKSSCMRYLVK 226
           E L  A L+   +LK+  + ++  
Sbjct: 139 EILILADLHSADQLKTQAVDFINY 162
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query263
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 100.0
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 100.0
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 100.0
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.98
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.96
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.94
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.94
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.94
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.93
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.93
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.93
2vpk_A116 Myoneurin; transcription regulation, transcription 99.93
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.93
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.92
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.92
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.92
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.91
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.91
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.9
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.89
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.48
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.3
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.11
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 99.03
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.57
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.55
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.51
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.5
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 98.19
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.05
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 97.54
3kvt_A115 Potassium channel protein SHAW; tetramerization do 96.31
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 96.24
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 95.87
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 95.31
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 95.09
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 87.42
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 82.46
2vpk_A116 Myoneurin; transcription regulation, transcription 81.93
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 81.01
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 80.92
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 80.07
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
Probab=100.00  E-value=2.1e-32  Score=239.49  Aligned_cols=186  Identities=25%  Similarity=0.361  Sum_probs=151.2

Q ss_pred             hcccCCCCceeeecccccceeEEEEeeecccccCCCCCCCCccccccccccCChHHHHHHHHHHhhCCCcccEEEEecCe
Q 024753           28 RQLKNNDDFVWAIEVPLTGKFIIDVEFLDLKIAPSDGGEPCSIWAEGITQKRSNATALASLGRMLTEGIHTDIIINASNG  107 (263)
Q Consensus        28 ~~l~~~d~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~~~v~~~  107 (263)
                      .++. ||+++++|+|.+.+......        .........         .+++.+.++++.+++++.++||+|.++|+
T Consensus       123 ~yl~-dD~l~i~~~v~v~~~~~~~~--------~~~~~~~~~---------~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~  184 (312)
T 3hqi_A          123 GLLP-DDKLTLFCEVSVVQDSVNIS--------GQNTMNMVK---------VPECRLADELGGLWENSRFTDCCLCVAGQ  184 (312)
T ss_dssp             CCCG-GGCEEEEEEEEEEEECCCEE--------CCCCCSSCC---------CCCCCHHHHHHHHHHTTCSCCEEEEETTE
T ss_pred             Ceec-CCEEEEEEEEEEEecccccc--------ccccccccC---------CCCchHHHHHHHHHhCCCCCceEEEECCE
Confidence            4777 89999999999876542111        000111111         22234678999999999999999999999


Q ss_pred             EEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHHHHhhcCCCCccccHHHHHHHHHHHHhhCcHHHHHH
Q 024753          108 STGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYIYGNIEHEEFLTHRLALLRAADKYDICDLKEA  187 (263)
Q Consensus       108 ~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~lL~fiYt~~~~~~~~~~~~~ll~~A~~~~~~~L~~~  187 (263)
                      +|+|||.|||++||||++||.++++|+...+|.++++++++|+.+|+|+||+..... .+++.+|+.+|++|+++.|+..
T Consensus       185 ~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~-~~~~~~ll~~A~~~~~~~l~~~  263 (312)
T 3hqi_A          185 EFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNL-DKMADDLLAAADKYALERLKVM  263 (312)
T ss_dssp             EEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTH-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred             EEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCCh-HHHHHHHHHHHHHhCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998843322 3899999999999999999999


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHhCCChHHHHHHHHHHH-HHHhhhc
Q 024753          188 CHDSLVEDIDTKNVLERLQNAYLYQLPKLKSSCMRYLV-KFGKIFD  232 (263)
Q Consensus       188 c~~~l~~~l~~~n~~~~l~~A~~~~~~~L~~~~~~~i~-~~~~v~~  232 (263)
                      |+++|.+.++.+|+..++.+|++|++..|++.|++||. |+.++.+
T Consensus       264 c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~  309 (312)
T 3hqi_A          264 CEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLE  309 (312)
T ss_dssp             HHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999 8888865
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 263
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 9e-17
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 4e-14
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 9e-17
 Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 3/109 (2%)

Query: 85  LASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDM 144
           L +L R+ +  I TD++I  S     AH+ VL A S +F S+F+  LK         P++
Sbjct: 13  LLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEI 72

Query: 145 SIDACQAFLSYIY-GNIEHEEFLTHRLALLRAADKYDICDLKEACHDSL 192
           + +     L ++Y   +   E   + +A++  A    +  + + C   +
Sbjct: 73  NPEGFNILLDFMYTSRLNLRE--GNIMAVMATAMYLQMEHVVDTCRKFI 119
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query263
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.94
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.93
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.88
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.77
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 97.6
d3kvta_103 akv3.1 voltage-gated potassium channel {California 97.09
d1t1da_100 Shaker potassium channel {California sea hare (Apl 97.07
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 95.48
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 94.97
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 93.88
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 92.44
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 80.95
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.2e-26  Score=172.58  Aligned_cols=116  Identities=23%  Similarity=0.367  Sum_probs=107.0

Q ss_pred             ccCChHHHHHHHHHHhhCCCcccEEEEecCeEEehhHHHHhhcChhHHhhhcCCCCcCCcceEEeCCCCHHHHHHHHHhh
Q 024753           77 QKRSNATALASLGRMLTEGIHTDIIINASNGSTGAHRAVLAARSPVFRSMFSHDLKEKELSTIDIPDMSIDACQAFLSYI  156 (263)
Q Consensus        77 ~~~~~~~l~~~l~~l~~~~~~~Dv~~~v~~~~~~aHr~iLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~lL~fi  156 (263)
                      .+.|...++..|+.+++++.+|||++.++|++|+|||.||+++|+||++||.+++.++....+.++++++++|+.+|+|+
T Consensus         5 ~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~   84 (122)
T d1r29a_           5 FTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFM   84 (122)
T ss_dssp             CTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhh
Confidence            46788999999999999999999999999999999999999999999999999999888888888899999999999999


Q ss_pred             cCC-CCccccHHHHHHHHHHHHhhCcHHHHHHHHHHHHh
Q 024753          157 YGN-IEHEEFLTHRLALLRAADKYDICDLKEACHDSLVE  194 (263)
Q Consensus       157 Yt~-~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~  194 (263)
                      ||| ...+.  +++.+++.+|++|+++.|++.|+++|..
T Consensus        85 Ytg~~~i~~--~~v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          85 YTSRLNLRE--GNIMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HHSCCCCCT--TTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cCCeecCch--hhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            987 33343  7899999999999999999999999875
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure