Citrus Sinensis ID: 024756

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLTTGVEIMAIVCTVRTHQKSK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEcHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccEEEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcHcEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHEEEHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEcccHHHHHHHHHHHEccccc
Coil and Loop (DISEMBL)
MALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFlfrrnkgasltWSLIWRFFLLGLigssgqiiyftglkfssptlssAMANLIPIYTFLLAVIFRIEKLdlrrsssqaktLGATVAVTGAFMITLYRgplllmasstsdspdhpkllfSQQSEWLIGGLLLVLVCISSAIWNVAQAAtirgypeemTVVFFYTFFITIQALCFSVIVENdidawkltTGVEIMAIVCTVRTHQKSK
Flexible Loop (DISEMBL)
MALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLrrsssqaktlgatvAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLTTGVEIMAIVCTvrthqksk
Low Complexity Region (SEG)
MALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWligglllvlvcissAIWNVAQAATIRGYPEEMtvvffytffitiQALCFSVIVENDIDAWKLTTGVEIMAIVCTVRTHQKSK
Disordered region (IsUnstruct)
***ASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMA***********LLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLTTGVEIMAIVCTVR******
Disordered Region (DISOPRED)
***********PFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLM*******************EWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLTTGVEIMAIVCTVRTHQK**
Disordered Region (DISEMBL)
MALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLTTGVEIMAIVCTVRTHQKSK
Disordered Region (DISPRO)
***ASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASS***************SEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLTTGVEIMAIVCTVRTHQK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLTTGVEIMAIVCTVRTHQKSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
F4I5D5	375	WAT1-related protein At1g	yes	no	0.931	0.653	0.403	1e-45
Q9FL08	368	WAT1-related protein At5g	no	no	0.931	0.665	0.400	4e-43
Q94JU2	367	WAT1-related protein At3g	no	no	0.946	0.678	0.380	1e-41
F4KHA8	370	WAT1-related protein At5g	no	no	0.927	0.659	0.379	4e-41
Q945L4	339	WAT1-related protein At5g	no	no	0.855	0.663	0.377	1e-37
F4JK59	347	WAT1-related protein At4g	no	no	0.897	0.680	0.379	2e-37
Q9FL41	402	WAT1-related protein At5g	no	no	0.939	0.614	0.326	3e-35
Q94AP3	389	Protein WALLS ARE THIN 1	no	no	0.908	0.614	0.36	2e-34
Q9ZUI8	374	WAT1-related protein At1g	no	no	0.942	0.663	0.342	6e-33
Q9LV20	383	WAT1-related protein At3g	no	no	0.897	0.616	0.360	2e-32

>sp|F4I5D5|WTR11_ARATH WAT1-related protein At1g70260 OS=Arabidopsis thaliana GN=At1g70260 PE=2 SV=1

 Score =  183 bits (464), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/255 (40%), Positives = 154/255 (60%), Gaps = 10/255 (3%)

Query: 11  IPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-FLFRRNKGAS- 68
           +PFVAM  +E   + L++++K ALT GM+ FV VVY NA G+++LLP+ FLF RN+    
Sbjct: 11  VPFVAMAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSFLFHRNERTEQ 70

Query: 69  --LTWSLIWRFFLLGLIG-SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEK 125
              +W L+ R F LG  G    Q + F GL+FSSP +  AM   IP ++FLL++I    K
Sbjct: 71  SIFSWPLLVRVFFLGFTGIFMFQNLAFVGLRFSSPIVVCAMGLQIPSFSFLLSIILGRSK 130

Query: 126 LDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDS---PDHPKLL--FSQQSE 180
           LD R +S++AK +G  V+++GAF+  LY+GP +  ASS S +      PKLL  ++    
Sbjct: 131 LDWRNTSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKSVPKLLVYYNLPDN 190

Query: 181 WLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDA 240
           W +G + L +   S +++NV Q  T++ YP  M V  FY+   TIQ L FS+ +E D+ A
Sbjct: 191 WFLGCIFLAVAVFSVSLFNVVQTGTVKKYPHVMKVASFYSIVGTIQCLLFSLFMERDLSA 250

Query: 241 WKLTTGVEIMAIVCT 255
           WK+    ++  I+ T
Sbjct: 251 WKIQPNFDLYLIIAT 265

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL08|WTR42_ARATH WAT1-related protein At5g40240 OS=Arabidopsis thaliana GN=At5g40240 PE=2 SV=1

 Score =  174 bits (442), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 101/252 (40%), Positives = 160/252 (63%), Gaps = 7/252 (2%)

Query: 8   QNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-FLFRRNKG 66
           ++ +PF AM  VEC  VG + + KAA  +G++ +V V Y   + TL+LLP   +F R++ 
Sbjct: 16  RDVVPFAAMFAVECATVGSNTLFKAATLRGLSFYVFVFYSYIVSTLLLLPLSVIFGRSRR 75

Query: 67  ASLTWS-LIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEK 125
                S L ++ FLLGL+G   QI    G+ +SSPTL+SA++NL P +TF LAVIFR+E+
Sbjct: 76  LPAAKSPLFFKIFLLGLVGFMSQIAGCKGIAYSSPTLASAISNLTPAFTFTLAVIFRMEQ 135

Query: 126 LDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASS-TSDSPD---HPKLLFSQQSEW 181
           + LR S++QAK +GA ++++GA ++ LY+GP +L ++S T+  P    H +L  S +S W
Sbjct: 136 VRLRSSATQAKIIGAILSISGALVVVLYKGPQVLASASFTTVLPTVTLHQQLT-SIESSW 194

Query: 182 LIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAW 241
           +IGGLLL       ++W + Q   +  YPEE+TVVFFY  F T+ ++   +  E+++ +W
Sbjct: 195 IIGGLLLASQYFLISVWYILQTRVMEVYPEEITVVFFYNLFATLISVPVCLFAESNLTSW 254

Query: 242 KLTTGVEIMAIV 253
            L   + + AI+
Sbjct: 255 VLKPDISLAAII 266

Arabidopsis thaliana (taxid: 3702)

>sp|Q94JU2|WTR18_ARATH WAT1-related protein At3g28050 OS=Arabidopsis thaliana GN=At3g28050 PE=2 SV=1

 Score =  169 bits (429), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/260 (38%), Positives = 156/260 (60%), Gaps = 11/260 (4%)

Query: 1   MALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFL 60
           MA   + +  +P  A+V +EC +VGL+ + KAA  KGM+  V +VY   L  L+LLP   
Sbjct: 1   MARKYFQREVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLF 60

Query: 61  --FRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLA 118
             FR      + +S++++  LLG+IG    I+ +TG+ +SSPTL+SA++NL P +TFLLA
Sbjct: 61  CSFRSRTLPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLA 120

Query: 119 VIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQ 178
           V+FR+E +  +R+SS AK LG  V++ GAF++TLY GP+++  S  S S      L SQ 
Sbjct: 121 VVFRMESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVS------LRSQS 174

Query: 179 S--EWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVE- 235
           +   W++G   L +      +W + Q   +R YP E TVV FY+  ++      ++  E 
Sbjct: 175 TNPNWILGAGFLAVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEG 234

Query: 236 NDIDAWKLTTGVEIMAIVCT 255
           ND+ AWK+   + +++IVC+
Sbjct: 235 NDLGAWKIKPNIALVSIVCS 254

Arabidopsis thaliana (taxid: 3702)

>sp|F4KHA8|WTR41_ARATH WAT1-related protein At5g40230 OS=Arabidopsis thaliana GN=At5g40230 PE=2 SV=1

 Score =  168 bits (425), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/253 (37%), Positives = 154/253 (60%), Gaps = 9/253 (3%)

Query: 8   QNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-FLFRRNKG 66
           ++ +PF AMV VEC  VG + + KAA  +G++ +V V Y   + TL+LLP   +F R+K 
Sbjct: 17  RDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSLIFGRSKR 76

Query: 67  -ASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEK 125
             S    + +  FLL L+G    I+   G+++SSPTL+SA++NL P +TF LAVIFR+E+
Sbjct: 77  LPSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLAVIFRMEQ 136

Query: 126 LDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQ-----SE 180
           + LR S++QAK +G  V+++GA ++ LY+GP +L  +  S +P  P +   Q      S 
Sbjct: 137 IVLRSSATQAKIIGTIVSISGALVVILYKGPKVL--TDASLTPPSPTISLYQHLTSFDSS 194

Query: 181 WLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDA 240
           W+IGGLLL    +  ++W + Q   +  YPEE+TVVF Y    T+ +    +  E D+++
Sbjct: 195 WIIGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAEKDLNS 254

Query: 241 WKLTTGVEIMAIV 253
           + L  GV + +++
Sbjct: 255 FILKPGVSLASVM 267

Arabidopsis thaliana (taxid: 3702)

>sp|Q945L4|WTR40_ARATH WAT1-related protein At5g40210 OS=Arabidopsis thaliana GN=At5g40210 PE=2 SV=1

 Score =  156 bits (395), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/244 (37%), Positives = 144/244 (59%), Gaps = 19/244 (7%)

Query: 15  AMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP--YFLFRRNKGASLTWS 72
           AMV  E ++VG++ + KAA +KG++ FV +VY    G+L+LLP  +F FR      LT+S
Sbjct: 16  AMVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFS 75

Query: 73  LIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSS 132
           ++    +LGLI S+ QI+ + G+K+SSPTLSSAM+N+ P +TF+LAV+FR+E + L + S
Sbjct: 76  ILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKS 135

Query: 133 SQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVC 192
           S AK LG  +++ GA ++TLY GP+L+                S  S+W+IGG LL L  
Sbjct: 136 SVAKVLGTILSIIGALVVTLYHGPMLM----------------SSHSDWIIGGGLLALQY 179

Query: 193 ISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVEND-IDAWKLTTGVEIMA 251
           I  ++  +  A T+  YP  + V   +   I +     S++ E D   AW +   + ++ 
Sbjct: 180 ILVSVSYLVMAHTMGRYPSAVVVTLVHNVCIAVVCAFVSLLAEKDNPKAWVIRFDITLIT 239

Query: 252 IVCT 255
           +V T
Sbjct: 240 VVAT 243

Arabidopsis thaliana (taxid: 3702)

>sp|F4JK59|WTR33_ARATH WAT1-related protein At4g15540 OS=Arabidopsis thaliana GN=At4g15540 PE=2 SV=1

 Score =  156 bits (394), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/248 (37%), Positives = 158/248 (63%), Gaps = 12/248 (4%)

Query: 8   QNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVY-YNALGTLILLPYFLFRRNKG 66
           ++ +PF AM+ +ECT VG S++ KAA  +G + +V V Y Y     ++LL   +F R++ 
Sbjct: 13  RDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRS 72

Query: 67  -ASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEK 125
             +   SL ++ FLL L+G + ++    G+++SSPTLSSA++NL P +TF+LA+ FR+E+
Sbjct: 73  LPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQ 132

Query: 126 LDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGG 185
           + LR S++QAK +G  V+++GA +I LY+GP LL+A+S +          S +S W+IGG
Sbjct: 133 VMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFT----------SFESSWIIGG 182

Query: 186 LLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLTT 245
           LLL L  +  ++W + Q   +  YPEE+ VVF Y    T+ +    ++VE D+++W+L  
Sbjct: 183 LLLGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKP 242

Query: 246 GVEIMAIV 253
           G  + +++
Sbjct: 243 GFSLASVI 250

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL41|WTR38_ARATH WAT1-related protein At5g07050 OS=Arabidopsis thaliana GN=At5g07050 PE=2 SV=1

 Score =  149 bits (375), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 84/257 (32%), Positives = 154/257 (59%), Gaps = 10/257 (3%)

Query: 5   SWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-FLFRR 63
           S+L ++ P+ AM++++    G+++I+K +L  GM+ +V VVY +A+ T ++ P+ F F R
Sbjct: 11  SFLTSSKPYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFER 70

Query: 64  NKGASLTWSLIWRFFLLGLIGSS-GQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFR 122
                +T+S+  + F+LGL+G    Q  Y+ GLK++SPT S AM+N++P  TF+LAV+FR
Sbjct: 71  KAQPKITFSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFR 130

Query: 123 IEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLL-------LMASSTSDSPDHPKLLF 175
           +E LDL++   QAK  G  V V GA ++T+Y+GP++       +    +S +        
Sbjct: 131 MEMLDLKKLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNS 190

Query: 176 SQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPE-EMTVVFFYTFFITIQALCFSVIV 234
           S   E+L G +LL+   ++ A   V QA  ++ Y + ++++     F  T+QA+  + ++
Sbjct: 191 SSDKEFLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVM 250

Query: 235 ENDIDAWKLTTGVEIMA 251
           E++  AW++   + ++A
Sbjct: 251 EHNPSAWRIGWDMNLLA 267

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AP3|WAT1_ARATH Protein WALLS ARE THIN 1 OS=Arabidopsis thaliana GN=WAT1 PE=1 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/250 (36%), Positives = 140/250 (56%), Gaps = 11/250 (4%)

Query: 14  VAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP--YFLFRRNKGASLTW 71
           +AM+T++    G  V+S+AAL  G++K V  VY N +  L+LLP  YFL ++ + A +T 
Sbjct: 22  IAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKERPA-ITL 80

Query: 72  SLIWRFFLLGLIG-SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRR 130
           + + +FF L LIG ++ Q  Y  GL  +SPT +S+M N +P  TFL+A + RIEK+ + R
Sbjct: 81  NFLIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVRINR 140

Query: 131 SSSQAKTLGATVAVTGAFMITLYRGPLLLMASS-------TSDSPDHPKLLFSQQSEWLI 183
               +K LG  + V GA +ITLY+GP +   +S       T++S     L  +    W +
Sbjct: 141 RDGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGNAAPKNWTL 200

Query: 184 GGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKL 243
           G + L+  C+S + W V QA  ++ YP  ++V  +  FF  IQ L  +   E D  AW  
Sbjct: 201 GCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCERDSQAWVF 260

Query: 244 TTGVEIMAIV 253
            +G E+  I+
Sbjct: 261 HSGWELFTIL 270

Required for secondary wall formation in fibers, especially in short days conditions. Promotes indole metabolism and transport (e.g. tryptophan, neoglucobrassicin and auxin (indole-3-acetic acid)). May prevent salicylic-acid (SA) accumulation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUI8|WTR9_ARATH WAT1-related protein At1g60050 OS=Arabidopsis thaliana GN=At1g60050 PE=3 SV=1

 Score =  141 bits (355), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 140/260 (53%), Gaps = 12/260 (4%)

Query: 8   QNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-FLFRRNKG 66
           +  +PF+ M  +E   + L++++K ALT GM+ FV +VY NALG+L+LLPY F F R++ 
Sbjct: 9   ETIVPFIVMALMEACTIALTILAKTALTGGMSPFVFIVYTNALGSLLLLPYSFYFHRDES 68

Query: 67  AS---LTWSLIWRFFLLGLIGSS-GQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFR 122
                LT   + R FLLG  G    Q + F GL +SSP +  AM    P ++FLL++   
Sbjct: 69  DDEPFLTKPSLVRIFLLGFTGVFLFQNMAFLGLSYSSPIVVCAMGLQSPAFSFLLSLALG 128

Query: 123 IEK-LDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPD------HPKLLF 175
            E  L      ++ + +G  +  TGAF+  +Y GP +  +  +S + +      H    F
Sbjct: 129 KEGGLGWASKRTKGRVIGTLICFTGAFVEVIYLGPFIRPSPPSSPTSNFLTTISHYLTFF 188

Query: 176 SQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVE 235
                W +G LLL    +S +IWN+ Q  T++ YP+ M VV  Y+   T+Q   FS  +E
Sbjct: 189 KNSDNWALGSLLLACATLSISIWNIIQLDTVQKYPQVMKVVSAYSLAGTLQCAIFSAFME 248

Query: 236 NDIDAWKLTTGVEIMAIVCT 255
            D+ AW+L   +++  I+ T
Sbjct: 249 PDLSAWELKLNMDLYLIIAT 268

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV20|WTR17_ARATH WAT1-related protein At3g18200 OS=Arabidopsis thaliana GN=At3g18200 PE=2 SV=1

 Score =  139 bits (351), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/244 (36%), Positives = 140/244 (57%), Gaps = 8/244 (3%)

Query: 14  VAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-FLFRRNKGASLTWS 72
           VA++T++    G  ++S+ AL  G++K V  VY N L  L++ P+ + F + +   LT S
Sbjct: 37  VALITLQFCFAGFHIVSRVALNIGVSKVVYPVYRNLLALLLIGPFAYFFEKKERPPLTIS 96

Query: 73  LIWRFFLLGLIG-SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRS 131
           L+ +FF L LIG ++ Q  Y  GL +++PT +SAM N +P  TF++A   R+E +DL R 
Sbjct: 97  LLAQFFFLALIGITANQGFYLLGLYYATPTFASAMQNSVPAITFIMACALRLEHIDLVRK 156

Query: 132 SSQAKTLGATVAVTGAFMITLYRG-PLLLMASSTSDSPDHPKLLFSQQSEWL-IGGLLLV 189
              AK LG  V++ GA +ITLYRG P+     +        +++ S  S  L +G L L+
Sbjct: 157 HGVAKVLGTLVSIGGATVITLYRGFPIFDQGLNMQKE----EVVGSDNSHSLTLGWLYLM 212

Query: 190 LVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLTTGVEI 249
             C+S A W V QA  ++ YP ++T+  F  FF  IQ L  ++ VE D++ W + +  E+
Sbjct: 213 GHCLSWAGWMVLQAPVLKQYPAKLTLTSFTCFFGLIQFLVIALFVETDLNNWIIVSWEEL 272

Query: 250 MAIV 253
             I+
Sbjct: 273 FTIL 276

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
255552656	358	conserved hypothetical protein [Ricinus	0.969	0.712	0.650	2e-78
224135771	355	predicted protein [Populus trichocarpa]	0.958	0.709	0.5	2e-59
357477327	353	Auxin-induced protein 5NG4 [Medicago tru	0.958	0.713	0.494	1e-57
255581162	349	Auxin-induced protein 5NG4, putative [Ri	0.923	0.696	0.459	3e-56
225457103	362	PREDICTED: auxin-induced protein 5NG4-li	0.950	0.690	0.465	9e-56
255552664	419	Auxin-induced protein 5NG4, putative [Ri	0.942	0.591	0.432	7e-53
225452526	360	PREDICTED: auxin-induced protein 5NG4 [V	0.961	0.702	0.419	2e-52
224099697	355	predicted protein [Populus trichocarpa]	0.923	0.684	0.464	3e-52
225424736	346	PREDICTED: auxin-induced protein 5NG4 [V	0.916	0.696	0.453	4e-51
224057230	355	predicted protein [Populus trichocarpa]	0.916	0.678	0.436	4e-50

>gi|255552656|ref|XP_002517371.1| conserved hypothetical protein [Ricinus communis] gi|223543382|gb|EEF44913.1| conserved hypothetical protein [Ricinus communis]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 166/255 (65%), Positives = 209/255 (81%)

Query: 1   MALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFL 60
           M L SWL N +PF AM+ VECTDVG+S ISKAAL KGM+K+VSVVYYNAL TLILLPYF+
Sbjct: 1   MELTSWLWNLVPFAAMIAVECTDVGVSTISKAALAKGMSKYVSVVYYNALATLILLPYFI 60

Query: 61  FRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVI 120
           F R K A +T SL++RFFLLGLIGS+GQI++   +K SSPTLSSA+ANLIPI+TFLLAVI
Sbjct: 61  FHRRKQAPVTHSLLFRFFLLGLIGSTGQILFLAAVKLSSPTLSSALANLIPIFTFLLAVI 120

Query: 121 FRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSE 180
            R+E LD+RRSSSQAK+LGA V+V GAF++TLY+GP +LM + TS+   H +LLFSQ+ E
Sbjct: 121 TRMETLDIRRSSSQAKSLGAIVSVAGAFVVTLYKGPAVLMTTQTSNFHHHHQLLFSQKPE 180

Query: 181 WLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDA 240
           W+ GG LL++VC+ SA WNVAQ AT++ Y E MT+VFF+TFFITIQ+  FS+I+E + +A
Sbjct: 181 WIFGGFLLLIVCLLSATWNVAQGATVKEYQEPMTIVFFFTFFITIQSAVFSLILERNPNA 240

Query: 241 WKLTTGVEIMAIVCT 255
           W L + +EI+AIV T
Sbjct: 241 WILKSSIEIIAIVFT 255

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135771|ref|XP_002322156.1| predicted protein [Populus trichocarpa] gi|222869152|gb|EEF06283.1| predicted protein [Populus trichocarpa]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 127/254 (50%), Positives = 173/254 (68%), Gaps = 2/254 (0%)

Query: 1   MALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFL 60
           M + S L N +PF AMV VEC DVGL+ +SKAA++KGM++FV VVY NAL TLILLP  +
Sbjct: 1   MGVKSVLLNLLPFAAMVMVECLDVGLTTLSKAAMSKGMSQFVFVVYSNALATLILLPSLI 60

Query: 61  FRRNKGASLTWSLIWRFFLLGLIGSS-GQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAV 119
           F R K   +T+SL+ +FFLL L+G +  Q   FTG+ +SSPTL+SAM  LIP +TFLLAV
Sbjct: 61  FYRTKRPPVTYSLLCKFFLLSLVGITLMQNCVFTGVSYSSPTLASAMGQLIPAFTFLLAV 120

Query: 120 IFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQS 179
           IFR+EKLD R S S+ K +G  V+V+GA  ITLY+GP  + A +T  +PD    + S  +
Sbjct: 121 IFRMEKLDWRSSRSRIKIMGTLVSVSGALTITLYKGP-AIGAITTQSNPDPIPSIMSTAN 179

Query: 180 EWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDID 239
            W+IGGL LV   +  +I+   QAA ++ YP EM +V F   F TIQ+   S+I E + +
Sbjct: 180 SWIIGGLFLVTADLCVSIFTTLQAAILKEYPSEMAMVSFLCLFGTIQSSIVSLIAERNPN 239

Query: 240 AWKLTTGVEIMAIV 253
           AWKL   +E+++I+
Sbjct: 240 AWKLRPDIELISII 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477327|ref|XP_003608949.1| Auxin-induced protein 5NG4 [Medicago truncatula] gi|355510004|gb|AES91146.1| Auxin-induced protein 5NG4 [Medicago truncatula]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 127/257 (49%), Positives = 171/257 (66%), Gaps = 5/257 (1%)

Query: 1   MALASWLQNTIPFVAMVTVECTDVGLSVISKAAL-TKGMNKFVSVVYYNALGTLILLP-Y 58
           M +  +L   IPF AMV VEC DVGL+ +SK A+ TKGMN F+ V+Y NAL T ILLP Y
Sbjct: 1   MEVKRYLLECIPFAAMVIVECLDVGLTTLSKEAMSTKGMNHFIFVLYSNALATFILLPSY 60

Query: 59  FLFRRNKGASLTWSLIWRFFLLGLIGSS-GQIIYFTGLKFSSPTLSSAMANLIPIYTFLL 117
           FL  R     L++SL+ +FF LGL+G +  Q   FTG+ +SSPTL SAM+NL P  TF+L
Sbjct: 61  FLINRTTRPPLSFSLLAKFFFLGLVGITIMQNCVFTGISYSSPTLGSAMSNLTPAITFVL 120

Query: 118 AVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRG-PLLLMASSTSDSPDHPKLLFS 176
           AVIFR+EKLD   S SQ K +G  V+++GA ++T Y+G P+  + +  S S     LL +
Sbjct: 121 AVIFRMEKLDAGSSISQIKIVGTVVSISGALIVTFYKGAPISSIQTQPSTSQPFWSLL-A 179

Query: 177 QQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVEN 236
           + S W+IGGL L    +S AIWN+AQA  +RGYP ++T+V FY  F TIQ    S+IV  
Sbjct: 180 ETSNWVIGGLFLATASLSLAIWNIAQAEILRGYPSQLTIVAFYCLFGTIQCALLSLIVVK 239

Query: 237 DIDAWKLTTGVEIMAIV 253
           D +AW L+  +E++AI+
Sbjct: 240 DPNAWNLSLDIELIAII 256

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581162|ref|XP_002531394.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223528987|gb|EEF30978.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 114/248 (45%), Positives = 164/248 (66%), Gaps = 5/248 (2%)

Query: 7   LQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-FLFRRNK 65
           ++  +PFV MV  EC  VGL +ISK A++KGM+ F+ V Y NAL +LILLP+  L RR +
Sbjct: 3   MKVALPFVGMVIAECAQVGLMIISKVAMSKGMSSFIFVCYSNALASLILLPFSLLHRRTE 62

Query: 66  GASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEK 125
              LT+S++  FFLLGL G   Q   + G+  SSPTL +AM NL+P  TF+LAV FR+EK
Sbjct: 63  RPPLTFSIVCGFFLLGLFGCLAQFFGYAGINLSSPTLGTAMLNLVPGLTFILAVAFRMEK 122

Query: 126 LDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGG 185
           LD R SSS AK++G  ++V GAF++T Y+GPL+L+  S + S      L +Q S W+IGG
Sbjct: 123 LDGRTSSSLAKSMGTIISVGGAFILTYYKGPLVLLTPSLNSSHQ----LLTQPSNWIIGG 178

Query: 186 LLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLTT 245
           LLL   C+ ++ W + QA  ++ YP E+ +VFFY FF+TI +    ++VE D  AW L  
Sbjct: 179 LLLAADCVMTSAWIIIQALILKIYPAELIIVFFYCFFVTILSAIVCLVVERDPSAWSLIP 238

Query: 246 GVEIMAIV 253
            + +++++
Sbjct: 239 NIRLVSVL 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457103|ref|XP_002283377.1| PREDICTED: auxin-induced protein 5NG4-like [Vitis vinifera]

 Score =  223 bits (567), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 120/258 (46%), Positives = 168/258 (65%), Gaps = 8/258 (3%)

Query: 1   MALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-F 59
           M + +WL   +P  AMVTVEC DVGL+ +SKAA+++GM++FV VVY NA  +LIL    F
Sbjct: 1   MGVKAWLSGMVPIAAMVTVECLDVGLTTLSKAAMSRGMDRFVFVVYSNAFASLILFSISF 60

Query: 60  LFRRNKGASLTWSLIWRFFLLGLIG-SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLA 118
           +F R K   L++SL+ +FFLL L G +  Q   FTG+ + SPTL SAM+NLIP +TFLLA
Sbjct: 61  IFLRTKRPPLSFSLLCKFFLLSLAGITVMQNCVFTGVSYGSPTLGSAMSNLIPAFTFLLA 120

Query: 119 VIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLL---LMASSTSDSPDHPKLLF 175
           V FR+E LDLR S S  K LG  V+++GA ++TLY+GP +   L+ S +  S DH   L 
Sbjct: 121 VAFRLENLDLRSSRSLIKILGTLVSISGALIVTLYKGPPIGAGLIKSPSISSNDH---LQ 177

Query: 176 SQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVE 235
              + W+IGGL   +  +S ++WN+ QA  +R YP E+T+V F+T F  IQ    ++I  
Sbjct: 178 KTANNWVIGGLFFAMAGLSISVWNIFQAPILRRYPSEITIVSFFTLFGAIQCAAVALIAV 237

Query: 236 NDIDAWKLTTGVEIMAIV 253
            D +AWKL    E++ I+
Sbjct: 238 KDSNAWKLRPDFELITII 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552664|ref|XP_002517375.1| Auxin-induced protein 5NG4, putative [Ricinus communis] gi|223543386|gb|EEF44917.1| Auxin-induced protein 5NG4, putative [Ricinus communis]

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 109/252 (43%), Positives = 167/252 (66%), Gaps = 4/252 (1%)

Query: 6   WLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-FLFRRN 64
           W ++ +PF  +VT+EC +VGL+ + KAA  +GMN  V +VY  A+  L+LLP  F+  R+
Sbjct: 68  WYEDVLPFTTLVTMECVNVGLNTLYKAATLEGMNYHVFIVYAYAIAALVLLPAPFISSRS 127

Query: 65  KG-ASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRI 123
           +    L++S++ +  LLG+IGSS QI+ +TG+ +SSPTLSSA++NL P +TF+LA+IFR+
Sbjct: 128 RMLPPLSFSILCKIGLLGVIGSSSQILGYTGINYSSPTLSSAISNLTPAFTFILAIIFRM 187

Query: 124 EKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLI 183
           E++ LR+ SSQAK LG  V++ GAF++TLY+GPL+ +ASS   + D P    S    W++
Sbjct: 188 ERVSLRKRSSQAKVLGTIVSIAGAFVVTLYKGPLIFIASSPFIALDQPPR--SSNPNWIL 245

Query: 184 GGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKL 243
           GG+ L    I   +W + Q   ++ YP EMTVVFFY   ++  A   ++I E    AW +
Sbjct: 246 GGIFLTAEYILVPLWYIVQTQIMKEYPAEMTVVFFYNLTVSFIAAVVALISEGPSSAWVV 305

Query: 244 TTGVEIMAIVCT 255
             G+ + +IVC+
Sbjct: 306 RPGIALASIVCS 317

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452526|ref|XP_002279762.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera]

 Score =  211 bits (538), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 109/260 (41%), Positives = 166/260 (63%), Gaps = 7/260 (2%)

Query: 1   MALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP--Y 58
           M    W ++ + F AMV +ECT+VGL+ + KAA  +G+N  V VVY   +  L+LLP  +
Sbjct: 1   MRRGDWYRDVVSFSAMVALECTNVGLNTLYKAATLRGLNYHVFVVYAYGIAALVLLPSPF 60

Query: 59  FLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLA 118
              RR     L++ ++ + F+LGLIG + Q + + G+  SSPTL+SA++NL+P +TF+LA
Sbjct: 61  ITHRRGVLPPLSFPVLCKIFVLGLIGCASQTMGYRGINISSPTLASAISNLVPAFTFILA 120

Query: 119 VIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDS---PDHPKLLF 175
           VIFR+EKL LR SSSQAK +G  V+++GAF++TLY+GP +++  S S S   P HP  L 
Sbjct: 121 VIFRMEKLALRSSSSQAKIIGTIVSISGAFVVTLYKGPPIILTPSPSISLHQPPHP--LR 178

Query: 176 SQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVE 235
           S +S W+IG L L +    + +W + QA  I+ YP E TVVFFY  F+++ A    ++ E
Sbjct: 179 SSESSWIIGALFLSVEYFLTPVWYIVQAHIIKEYPSEPTVVFFYNLFVSLLAAIVGLVTE 238

Query: 236 NDIDAWKLTTGVEIMAIVCT 255
            +   W +   + + +IVC+
Sbjct: 239 PNSSVWIVRPRIALASIVCS 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099697|ref|XP_002311582.1| predicted protein [Populus trichocarpa] gi|222851402|gb|EEE88949.1| predicted protein [Populus trichocarpa]

 Score =  211 bits (537), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 118/254 (46%), Positives = 160/254 (62%), Gaps = 11/254 (4%)

Query: 7   LQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-FLFRRNK 65
           L+   PFV MV  EC  VGL ++SKAA++ GM  F+ V+Y NAL +LILLP  F   R++
Sbjct: 3   LKAAAPFVGMVMAECAQVGLMILSKAAMSDGMTNFIFVLYSNALASLILLPSSFFLHRSE 62

Query: 66  GASLTWSLIWRFFLLGLIGSSGQIIYF------TGLKFSSPTLSSAMANLIPIYTFLLAV 119
              LT+ ++  FFLLGL G +  +IYF       G+  SS TL +AM NLIP  TF+LAV
Sbjct: 63  RPPLTFPILCGFFLLGLFGYA-ILIYFDFIFGYAGINLSSATLGTAMLNLIPGLTFILAV 121

Query: 120 IFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQS 179
            FR+EKLD + SS+  K+ G  V+V GAF++  Y+GP LLMA STS+ P     L SQQ 
Sbjct: 122 AFRMEKLDWKSSSALVKSTGTIVSVAGAFIVCYYKGPPLLMAPSTSNLPHE---LLSQQQ 178

Query: 180 EWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDID 239
            W+IGGLLL + C+ ++ W + QA  ++ YP E+ VVFFY F +TI +    + +E D  
Sbjct: 179 NWIIGGLLLAVDCVMASAWLIIQALILKKYPAELIVVFFYCFSVTILSTIVCLFMERDPG 238

Query: 240 AWKLTTGVEIMAIV 253
           AW L   V  +A+V
Sbjct: 239 AWSLKPTVRWIAVV 252

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424736|ref|XP_002266139.1| PREDICTED: auxin-induced protein 5NG4 [Vitis vinifera] gi|296086519|emb|CBI32108.3| unnamed protein product [Vitis vinifera]

 Score =  207 bits (527), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 111/245 (45%), Positives = 170/245 (69%), Gaps = 4/245 (1%)

Query: 10  TIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-FLFRRNKGAS 68
           ++PF+ MV V  T V   ++SK A++ G++ FV V+Y NA+  +ILLP   LF R+    
Sbjct: 8   SLPFLGMVIVVFTQVTNMIVSKMAMSNGLSSFVLVLYSNAISAVILLPLSLLFHRSPRPP 67

Query: 69  LTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDL 128
           LT+S++ RFFLL LIG   QI  + G+++SSPTL SAM NL+P +TF+LAVI R+EKL+L
Sbjct: 68  LTFSILCRFFLLALIGCFAQIFGYAGVQYSSPTLGSAMLNLVPAFTFILAVICRMEKLEL 127

Query: 129 RRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGGLLL 188
           ++SSS AK++GA V+V GAF++T Y+GP ++ +SS SDS +    +FS QS W++GG LL
Sbjct: 128 KKSSSLAKSVGALVSVAGAFVVTFYKGPPIMFSSSFSDSSNQ---IFSSQSHWVLGGFLL 184

Query: 189 VLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLTTGVE 248
               + +++W + QA  ++ +P  +T+ FFY FFI+I +L  S++ E D  AW+L   V 
Sbjct: 185 ADESLLASMWYILQATILKKHPAVLTITFFYCFFISIISLAISLVAERDPSAWRLKLDVG 244

Query: 249 IMAIV 253
           ++A++
Sbjct: 245 LLAVL 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057230|ref|XP_002299184.1| predicted protein [Populus trichocarpa] gi|222846442|gb|EEE83989.1| predicted protein [Populus trichocarpa]

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 107/245 (43%), Positives = 159/245 (64%), Gaps = 4/245 (1%)

Query: 11  IPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-FLFRRN-KGAS 68
           +P V MV  EC   G  ++ KAA++ GM+ FV V+Y NA+  LILLP  FLF R+ +   
Sbjct: 8   LPIVGMVMAECAQAGRMILGKAAMSNGMSSFVFVLYSNAIACLILLPSSFLFHRSSERPP 67

Query: 69  LTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDL 128
           LT S++  FFLLGL G  GQ   + G+  SSPTL +AM NL+P  TF+LA+IFR+E +D 
Sbjct: 68  LTLSIVSGFFLLGLFGCLGQSFCYAGINLSSPTLGTAMLNLVPGLTFILAIIFRMENVDW 127

Query: 129 RRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGGLLL 188
           +  S+ AK++G  V++ GAF++T Y+GPLLL A  +     H  LL  QQS W++GGLL+
Sbjct: 128 KSYSTLAKSMGTIVSIGGAFIVTCYKGPLLLKALPSVTKSSHQVLL--QQSNWVLGGLLM 185

Query: 189 VLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLTTGVE 248
            + C +++ W + QA  ++ Y  ++ VVFF+ FF TI +   SV++E D  AW L + + 
Sbjct: 186 AVDCATASSWLIVQALILKKYSAKLIVVFFHFFFSTILSSIVSVVMERDPSAWSLNSNIR 245

Query: 249 IMAIV 253
           ++A++
Sbjct: 246 LIAVL 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
TAIR|locus:2020688	375	UMAMIT36 "AT1G70260" [Arabidop	0.931	0.653	0.372	5.3e-40
TAIR|locus:2091363	367	UMAMIT41 "AT3G28050" [Arabidop	0.946	0.678	0.353	4.8e-39
TAIR|locus:2173752	370	UMAMIT37 "AT5G40230" [Arabidop	0.961	0.683	0.344	2.4e-35
TAIR|locus:2130344	347	UMAMIT38 "AT4G15540" [Arabidop	0.897	0.680	0.338	3.1e-35
TAIR|locus:2169414	402	UMAMIT9 "Usually multiple acid	0.939	0.614	0.315	2.3e-32
TAIR|locus:2173737	339	UMAMIT42 "Usually multiple aci	0.570	0.442	0.474	3.7e-32
TAIR|locus:2202745	374	UMAMIT35 "AT1G60050" [Arabidop	0.946	0.665	0.316	2.6e-31
TAIR|locus:2005689	389	WAT1 "Walls Are Thin 1" [Arabi	0.908	0.614	0.328	2.1e-29
TAIR|locus:2091393	358	UMAMIT47 "AT3G28080" [Arabidop	0.961	0.706	0.311	1.5e-28
TAIR|locus:2091368	355	UMAMIT44 "AT3G28130" [Arabidop	0.920	0.681	0.294	1.5e-28

TAIR|locus:2020688 UMAMIT36 "AT1G70260" [Arabidopsis thaliana (taxid:3702)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 95/255 (37%), Positives = 142/255 (55%)

Query:    11 IPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-FLFRRNKGAS- 68
             +PFVAM  +E   + L++++K ALT GM+ FV VVY NA G+++LLP+ FLF RN+    
Sbjct:    11 VPFVAMAIMEACTIALTIMAKTALTGGMSPFVFVVYTNAFGSILLLPFSFLFHRNERTEQ 70

Query:    69 --LTWSLIWRFFLLGLIGS-SGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEK 125
                +W L+ R F LG  G    Q + F GL+FSSP +  AM   IP ++FLL++I    K
Sbjct:    71 SIFSWPLLVRVFFLGFTGIFMFQNLAFVGLRFSSPIVVCAMGLQIPSFSFLLSIILGRSK 130

Query:   126 LDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDS---PDHPKLL--FSQQSE 180
             LD R +S++AK +G  V+++GAF+  LY+GP +  ASS S +      PKLL  ++    
Sbjct:   131 LDWRNTSTRAKLMGTIVSLSGAFVEELYKGPFIRPASSASPNRFLKSVPKLLVYYNLPDN 190

Query:   181 WXXXXXXXXXXXXXXAIWNVAQAATIRGYPEEMXXXXXXXXXXXXQALCFSVIVENDIDA 240
             W              +++NV Q  T++ YP  M            Q L FS+ +E D+ A
Sbjct:   191 WFLGCIFLAVAVFSVSLFNVVQTGTVKKYPHVMKVASFYSIVGTIQCLLFSLFMERDLSA 250

Query:   241 WKLTTGVEIMAIVCT 255
             WK+    ++  I+ T
Sbjct:   251 WKIQPNFDLYLIIAT 265

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2091363 UMAMIT41 "AT3G28050" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 92/260 (35%), Positives = 144/260 (55%)

Query:     1 MALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP--Y 58
             MA   + +  +P  A+V +EC +VGL+ + KAA  KGM+  V +VY   L  L+LLP  +
Sbjct:     1 MARKYFQREVLPVTALVIMECANVGLNTLFKAATLKGMSFHVFIVYSYGLAALLLLPSLF 60

Query:    59 FLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLA 118
               FR      + +S++++  LLG+IG    I+ +TG+ +SSPTL+SA++NL P +TFLLA
Sbjct:    61 CSFRSRTLPPMNFSILYKIVLLGIIGCCSNIMGYTGINYSSPTLASAISNLTPAFTFLLA 120

Query:   119 VIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQ 178
             V+FR+E +  +R+SS AK LG  V++ GAF++TLY GP+++  S  S S      L SQ 
Sbjct:   121 VVFRMESVSFKRTSSVAKMLGTVVSIGGAFIVTLYNGPVVIAKSPPSVS------LRSQS 174

Query:   179 SE--WXXXXXXXXXXXXXXAIWNVAQAATIRGYPEEMXXXXXXXXXXXXQALCFSVIVE- 235
             +   W               +W + Q   +R YP E                  ++  E 
Sbjct:   175 TNPNWILGAGFLAVEYFCVPLWYIVQTQIMREYPAEFTVVCFYSIGVSFWTALVTLFTEG 234

Query:   236 NDIDAWKLTTGVEIMAIVCT 255
             ND+ AWK+   + +++IVC+
Sbjct:   235 NDLGAWKIKPNIALVSIVCS 254

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173752 UMAMIT37 "AT5G40230" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 89/258 (34%), Positives = 144/258 (55%)

Query:     1 MALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFL 60
             +A + + ++ +PF AMV VEC  VG + + KAA  +G++ +V V Y   + TL+LLP  L
Sbjct:    10 VAWSYFCRDVVPFTAMVAVECVTVGSNTLFKAATLRGLSFYVFVFYTYVVATLVLLPLSL 69

Query:    61 -FRRNKGA-SLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLA 118
              F R+K   S    + +  FLL L+G    I+   G+++SSPTL+SA++NL P +TF LA
Sbjct:    70 IFGRSKRLPSAKTPVFFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLTPAFTFTLA 129

Query:   119 VIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLM-ASSTSDSPDHP--KLLF 175
             VIFR+E++ LR S++QAK +G  V+++GA ++ LY+GP +L  AS T  SP     + L 
Sbjct:   130 VIFRMEQIVLRSSATQAKIIGTIVSISGALVVILYKGPKVLTDASLTPPSPTISLYQHLT 189

Query:   176 SQQSEWXXXXXXXXXXXXXXAIWNVAQAATIRGYPEEMXXXXXXXXXXXXQALCFSVIVE 235
             S  S W              ++W + Q   +  YPEE+             +    +  E
Sbjct:   190 SFDSSWIIGGLLLATQYLLVSVWYILQTRVMELYPEEITVVFLYNLCATLISAPVCLFAE 249

Query:   236 NDIDAWKLTTGVEIMAIV 253
              D++++ L  GV + +++
Sbjct:   250 KDLNSFILKPGVSLASVM 267

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2130344 UMAMIT38 "AT4G15540" [Arabidopsis thaliana (taxid:3702)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 84/248 (33%), Positives = 143/248 (57%)

Query:     8 QNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFL-FRRNKG 66
             ++ +PF AM+ +ECT VG S++ KAA  +G + +V V Y     TL+LL   L F R++ 
Sbjct:    13 RDVVPFTAMIAIECTTVGSSILYKAATLRGFSFYVFVFYAYVGATLVLLLLSLIFGRSRS 72

Query:    67 A-SLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEK 125
               +   SL ++ FLL L+G + ++    G+++SSPTLSSA++NL P +TF+LA+ FR+E+
Sbjct:    73 LPTAKSSLFFKIFLLALLGLTSRVAGCKGIEYSSPTLSSAISNLTPAFTFILAIFFRMEQ 132

Query:   126 LDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWXXXX 185
             + LR S++QAK +G  V+++GA +I LY+GP LL+A+S +          S +S W    
Sbjct:   133 VMLRSSATQAKIIGTIVSISGALVIVLYKGPKLLVAASFT----------SFESSWIIGG 182

Query:   186 XXXXXXXXXXAIWNVAQAATIRGYPEEMXXXXXXXXXXXXQALCFSVIVENDIDAWKLTT 245
                       ++W + Q   +  YPEE+             +    ++VE D+++W+L  
Sbjct:   183 LLLGLQFLLLSVWFILQTHIMEIYPEEIAVVFCYNLCATLISGTVCLLVEKDLNSWQLKP 242

Query:   246 GVEIMAIV 253
             G  + +++
Sbjct:   243 GFSLASVI 250

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2169414 UMAMIT9 "Usually multiple acids move in and out Transporters 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 81/257 (31%), Positives = 143/257 (55%)

Query:     5 SWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-FLFRR 63
             S+L ++ P+ AM++++    G+++I+K +L  GM+ +V VVY +A+ T ++ P+ F F R
Sbjct:    11 SFLTSSKPYFAMISLQFGYAGMNIITKISLNTGMSHYVLVVYRHAIATAVIAPFAFFFER 70

Query:    64 NKGASLTWSLIWRFFLLGLIGSS-GQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFR 122
                  +T+S+  + F+LGL+G    Q  Y+ GLK++SPT S AM+N++P  TF+LAV+FR
Sbjct:    71 KAQPKITFSIFMQLFILGLLGPVIDQNFYYMGLKYTSPTFSCAMSNMLPAMTFILAVLFR 130

Query:   123 IEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLL-LMASSTSDSPD--HPKLLFSQQS 179
             +E LDL++   QAK  G  V V GA ++T+Y+GP++ L  +      D  H     S+ S
Sbjct:   131 MEMLDLKKLWCQAKIAGTVVTVAGAMLMTIYKGPIVELFWTKYMHIQDSSHANTTSSKNS 190

Query:   180 ----EWXXXXXXXXXXXXXXAIWNVAQAATIRGYPE-EMXXXXXXXXXXXXQALCFSVIV 234
                 E+              A   V QA  ++ Y + ++            QA+  + ++
Sbjct:   191 SSDKEFLKGSILLIFATLAWASLFVLQAKILKTYAKHQLSLTTLICFIGTLQAVAVTFVM 250

Query:   235 ENDIDAWKLTTGVEIMA 251
             E++  AW++   + ++A
Sbjct:   251 EHNPSAWRIGWDMNLLA 267

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2173737 UMAMIT42 "Usually multiple acids move in and out Transporters 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 73/154 (47%), Positives = 109/154 (70%)

Query:    15 AMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP--YFLFRRNKGASLTWS 72
             AMV  E ++VG++ + KAA +KG++ FV +VY    G+L+LLP  +F FR      LT+S
Sbjct:    16 AMVVTEFSNVGVNTLVKAATSKGLSPFVVLVYSYTFGSLLLLPLTFFSFRSRSLPPLTFS 75

Query:    73 LIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSS 132
             ++    +LGLI S+ QI+ + G+K+SSPTLSSAM+N+ P +TF+LAV+FR+E + L + S
Sbjct:    76 ILCNMGILGLIASAFQILGYNGIKYSSPTLSSAMSNVNPAFTFILAVVFRMENISLGKKS 135

Query:   133 SQAKTLGATVAVTGAFMITLYRGPLLLMASSTSD 166
             S AK LG  +++ GA ++TLY GP+L+  SS SD
Sbjct:   136 SVAKVLGTILSIIGALVVTLYHGPMLM--SSHSD 167

GO:0016020 "membrane" evidence=IEA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2202745 UMAMIT35 "AT1G60050" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 83/262 (31%), Positives = 129/262 (49%)

Query:     6 WLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPY-FLFRRN 64
             W +  +PF+ M  +E   + L++++K ALT GM+ FV +VY NALG+L+LLPY F F R+
Sbjct:     8 W-ETIVPFIVMALMEACTIALTILAKTALTGGMSPFVFIVYTNALGSLLLLPYSFYFHRD 66

Query:    65 KGAS---LTWSLIWRFFLLGLIGSS-GQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVI 120
             +      LT   + R FLLG  G    Q + F GL +SSP +  AM    P ++FLL++ 
Sbjct:    67 ESDDEPFLTKPSLVRIFLLGFTGVFLFQNMAFLGLSYSSPIVVCAMGLQSPAFSFLLSLA 126

Query:   121 FRIEK-LDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMA---SSTSD---SPDHPKL 173
                E  L      ++ + +G  +  TGAF+  +Y GP +  +   S TS+   +  H   
Sbjct:   127 LGKEGGLGWASKRTKGRVIGTLICFTGAFVEVIYLGPFIRPSPPSSPTSNFLTTISHYLT 186

Query:   174 LFSQQSEWXXXXXXXXXXXXXXAIWNVAQAATIRGYPEEMXXXXXXXXXXXXQALCFSVI 233
              F     W              +IWN+ Q  T++ YP+ M            Q   FS  
Sbjct:   187 FFKNSDNWALGSLLLACATLSISIWNIIQLDTVQKYPQVMKVVSAYSLAGTLQCAIFSAF 246

Query:   234 VENDIDAWKLTTGVEIMAIVCT 255
             +E D+ AW+L   +++  I+ T
Sbjct:   247 MEPDLSAWELKLNMDLYLIIAT 268

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA;ISS

TAIR|locus:2005689 WAT1 "Walls Are Thin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 82/250 (32%), Positives = 126/250 (50%)

Query:    14 VAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP--YFLFRRNKGASLTW 71
             +AM+T++    G  V+S+AAL  G++K V  VY N +  L+LLP  YFL ++ + A +T 
Sbjct:    22 IAMLTLQFGYAGFHVVSRAALNMGISKLVFPVYRNIIALLLLLPFAYFLEKKERPA-ITL 80

Query:    72 SLIWRFFLLGLIG-SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRR 130
             + + +FF L LIG ++ Q  Y  GL  +SPT +S+M N +P  TFL+A + RIEK+ + R
Sbjct:    81 NFLIQFFFLALIGITANQGFYLLGLDNTSPTFASSMQNSVPAITFLMAALLRIEKVRINR 140

Query:   131 SSSQAKTLGATVAVTGAFMITLYRGPLLLMASS-------TSDSPDHPKLLFSQQSEWXX 183
                 +K LG  + V GA +ITLY+GP +   +S       T++S     L  +    W  
Sbjct:   141 RDGISKILGTALCVAGASVITLYKGPTIYTPASHLHAHLLTTNSAVLAPLGNAAPKNWTL 200

Query:   184 XXXXXXXXXXXXAIWNVAQAATIRGYPEEMXXXXXXXXXXXXQALCFSVIVENDIDAWKL 243
                         + W V QA  ++ YP  +            Q L  +   E D  AW  
Sbjct:   201 GCIYLIGHCLSWSGWLVFQAPVLKSYPARLSVTSYTCFFGIIQFLIIAAFCERDSQAWVF 260

Query:   244 TTGVEIMAIV 253
              +G E+  I+
Sbjct:   261 HSGWELFTIL 270

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0090355 "positive regulation of auxin metabolic process" evidence=IMP

GO:0090358 "positive regulation of tryptophan metabolic process" evidence=IMP

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2091393 UMAMIT47 "AT3G28080" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 81/260 (31%), Positives = 133/260 (51%)

Query:     2 ALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLF 61
             A++ W +  +   AM+  E + VGLS + K A +KG+N +  + Y   L +L+LLP  LF
Sbjct:     4 AVSLWRREAVFLTAMLAGETSIVGLSTLFKVATSKGLNIYPFLSYSYLLASLLLLPS-LF 62

Query:    62 RRNKGASL---TWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLA 118
               N+  SL   + S++ +  LLG +GS   I    G+++S+PTL+SA+ N++P  TF+LA
Sbjct:    63 FTNRSRSLPPLSASILSKIGLLGFLGSMYVITGGIGIEYSNPTLASAIGNIVPALTFILA 122

Query:   119 VIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTS--DSPDHPKLLFS 176
             VIFR+EK+  +  SS AK +G  +++ GAF++  Y GP + +ASS    +       L S
Sbjct:   123 VIFRMEKVSFKERSSVAKVMGTILSLIGAFVVIFYHGPRVFVASSPPYLNFRQLSPPLSS 182

Query:   177 QQSEWXXXXXXXXXXXXXXAIWNVAQAATIRGYPEEMXXXXXXXXXXXXQALCFSVIVE- 235
              +S+W              ++  + Q   +R YPE                    ++VE 
Sbjct:   183 SKSDWLIGGAILTIQGIFVSVSFILQTHIMREYPEAFTVSILYILCISIVTSMIGLVVEK 242

Query:   236 NDIDAWKLTTGVEIMAIVCT 255
             N+   W +   + +  IV T
Sbjct:   243 NNPSIWIIHFDITLFTIVTT 262

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2091368 UMAMIT44 "AT3G28130" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 75/255 (29%), Positives = 131/255 (51%)

Query:     8 QNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP--YFLFRRNK 65
             ++ +   AM+  E  +V ++ + KAA +KG+N +  ++Y   +G+++LLP   F +R   
Sbjct:     9 RDAVLLTAMLATETGNVAMNTLFKAATSKGLNSYTFLIYSYLIGSIVLLPSHIFSYRSRS 68

Query:    66 GASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEK 125
               SL+ S++ +  +LGL+GS+  I  F G+++S+PTL+SA++N+ P  TF+LA+IFR+EK
Sbjct:    69 LPSLSLSILCKIGVLGLLGSTYLITGFIGIEYSNPTLASAISNINPAITFILAIIFRMEK 128

Query:   126 LDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKL------LFSQQS 179
                +  SS AK +G  V++ GA ++ LY GP +     T  SP  P+L      L S  S
Sbjct:   129 ASFKEKSSVAKMVGTIVSLVGALVVVLYHGPRVF----TPSSPPFPQLRQLLLPLSSSNS 184

Query:   180 EWXXXXXXXXXXXXXXAIWNVAQAATIRGYPEEMXXXXXXXXXXXXQALCFSVIVE-NDI 238
             +W               +  + QA  ++ YP                     ++ E N+ 
Sbjct:   185 DWIIGGCLLAIKDTLVPVAFILQAHIMKLYPAPFTVSFFYFLIASILTSLIGIVAEKNNP 244

Query:   239 DAWKLTTGVEIMAIV 253
               W +   + ++ IV
Sbjct:   245 SIWIIHFDITLVCIV 259

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	263
PLN00411	358	PLN00411, PLN00411, nodulin MtN21 family protein;	3e-41
pfam00892	126	pfam00892, EamA, EamA-like transporter family	6e-05

>gnl|CDD|177805 PLN00411, PLN00411, nodulin MtN21 family protein; Provisional

 Score =  144 bits (365), Expect = 3e-41
 Identities = 86/259 (33%), Positives = 143/259 (55%), Gaps = 5/259 (1%)

Query: 2   ALASWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLF 61
            ++ W +  +   AM+  E + VG+S + K A +KG+N +  + Y   L +L+LLP   F
Sbjct: 4   TVSLWRREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFF 63

Query: 62  --RRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAV 119
             R      L+ S++ +  LLG +GS   I  + G+++S+PTL+SA++N+ P  TF+LA+
Sbjct: 64  TNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAI 123

Query: 120 IFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTS--DSPDHPKLLFSQ 177
           IFR+EK+  +  SS AK +G  +++ GA ++  Y GP + +ASS    +       L S 
Sbjct: 124 IFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSSS 183

Query: 178 QSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVE-N 236
            S+WLIGG LL +  I  ++  + QA  +  YP   TV F YT  ++I      ++VE N
Sbjct: 184 NSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKN 243

Query: 237 DIDAWKLTTGVEIMAIVCT 255
           +   W +   + ++ IV  
Sbjct: 244 NPSVWIIHFDITLITIVTM 262

Length = 358

>gnl|CDD|216178 pfam00892, EamA, EamA-like transporter family

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 30/105 (28%), Positives = 54/105 (51%), Gaps = 7/105 (6%)

Query: 49  ALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSS-GQIIYFTGLKFSSPTLSSAMA 107
            +  ++L+      R   A L+   I     LGL G++ G ++YF  LK+ S + +S + 
Sbjct: 28  LIAGILLILLLFLLRKPFALLSLKAILALLYLGLFGTALGYLLYFYALKYVSASNASVIT 87

Query: 108 NLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL 152
           +L P++T +L+V+   EKL L+      + LG  + + G  +I L
Sbjct: 88  SLSPVFTLILSVLLLGEKLTLK------QLLGIVLILLGVLLILL 126

This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
PLN00411	358	nodulin MtN21 family protein; Provisional	99.96
PRK11272	292	putative DMT superfamily transporter inner membran	99.91
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.89
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.88
PRK11689	295	aromatic amino acid exporter; Provisional	99.87
PRK15430	296	putative chloramphenical resistance permease RarD;	99.87
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.87
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.84
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.81
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.74
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.74
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.68
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.67
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	99.62
COG2962	293	RarD Predicted permeases [General function predict	99.58
COG2510	140	Predicted membrane protein [Function unknown]	99.57
KOG4510	346	consensus Permease of the drug/metabolite transpor	99.53
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.43
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.4
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.35
PF13536	113	EmrE: Multidrug resistance efflux transporter	99.24
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.2
PRK11272	292	putative DMT superfamily transporter inner membran	99.2
KOG2765	416	consensus Predicted membrane protein [Function unk	99.18
PLN00411	358	nodulin MtN21 family protein; Provisional	99.15
PRK11689	295	aromatic amino acid exporter; Provisional	99.11
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.06
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	98.96
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	98.95
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	98.86
KOG2766	336	consensus Predicted membrane protein [Function unk	98.82
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	98.76
PRK15430	296	putative chloramphenical resistance permease RarD;	98.74
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	98.72
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	98.68
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	98.67
COG0697	292	RhaT Permeases of the drug/metabolite transporter	98.67
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.5
KOG2234	345	consensus Predicted UDP-galactose transporter [Car	98.34
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	98.27
KOG1443	349	consensus Predicted integral membrane protein [Fun	98.23
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.12
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	98.03
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	98.01
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	97.98
KOG3912	372	consensus Predicted integral membrane protein [Gen	97.93
KOG4314	290	consensus Predicted carbohydrate/phosphate translo	97.9
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	97.77
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.71
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	97.49
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	97.43
PRK13499	345	rhamnose-proton symporter; Provisional	97.4
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	97.13
PRK13499	345	rhamnose-proton symporter; Provisional	97.1
COG2962	293	RarD Predicted permeases [General function predict	96.97
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.97
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.9
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.87
KOG4510	346	consensus Permease of the drug/metabolite transpor	96.86
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	96.82
KOG1441	316	consensus Glucose-6-phosphate/phosphate and phosph	96.8
KOG2765	416	consensus Predicted membrane protein [Function unk	96.67
COG2076	106	EmrE Membrane transporters of cations and cationic	96.64
PRK11431	105	multidrug efflux system protein; Provisional	96.59
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.46
KOG1442	347	consensus GDP-fucose transporter [Carbohydrate tra	96.17
KOG1580	337	consensus UDP-galactose transporter related protei	96.1
KOG1580	337	consensus UDP-galactose transporter related protei	95.74
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	95.54
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	95.23
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	94.94
KOG1581	327	consensus UDP-galactose transporter related protei	94.9
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.9
KOG1581	327	consensus UDP-galactose transporter related protei	94.11
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	94.05
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	93.91
KOG1443	349	consensus Predicted integral membrane protein [Fun	93.07
KOG2922	335	consensus Uncharacterized conserved protein [Funct	92.72
KOG1444	314	consensus Nucleotide-sugar transporter VRG4/SQV-7	92.62
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	91.72
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	91.1
KOG1583	330	consensus UDP-N-acetylglucosamine transporter [Car	88.03
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	86.27
KOG4831	125	consensus Unnamed protein [Function unknown]	86.09
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	85.71
KOG3912	372	consensus Predicted integral membrane protein [Gen	85.67
KOG1582	367	consensus UDP-galactose transporter related protei	84.62
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	84.56
COG2510	140	Predicted membrane protein [Function unknown]	81.48
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	80.32

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.96  E-value=8e-28  Score=219.48  Aligned_cols=248  Identities=32%  Similarity=0.570  Sum_probs=191.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcC-CCCCCHHHHHHHHHHHHH
Q 024756            6 WLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNK-GASLTWSLIWRFFLLGLI   83 (263)
Q Consensus         6 ~~~~~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~-~~~~~~~~~~~~~l~g~l   83 (263)
                      |+++.+++..|++.+++++...++.|.+++.+++|..+.++|+.++++++++ .+.++|++ .++.+++++..+.+.|++
T Consensus         8 ~~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~   87 (358)
T PLN00411          8 WRREAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFL   87 (358)
T ss_pred             hhhccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence            7788899999999999999999999999999999999999999999999998 66544422 344467888888899998


Q ss_pred             HHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHH------hhccccccccCccccchhHHHHHHHHHHHHhhcCcc
Q 024756           84 GSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIF------RIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPL  157 (263)
Q Consensus        84 ~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~------~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~  157 (263)
                      +...+.+++.|++|+++++++++.+++|+++.++++++      ++||++++      +++|++++++|+.++..++++.
T Consensus        88 g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~------~~~G~~l~~~Gv~ll~~~~g~~  161 (358)
T PLN00411         88 GSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVA------KVMGTILSLIGALVVIFYHGPR  161 (358)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHH------HHHHHHHHHHHHHHHHHccCcc
Confidence            86677899999999999999999999999999999998      47777777      9999999999999887644432


Q ss_pred             ccccCCC--CCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHhc
Q 024756          158 LLMASST--SDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVE  235 (263)
Q Consensus       158 ~~~~~s~--~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~  235 (263)
                      ....+++  .|...+.++....+.+...|+++.++|+++||+|++++|+..+++|+....++|++.++++.+.+.+...+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~  241 (358)
T PLN00411        162 VFVASSPPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVE  241 (358)
T ss_pred             cccccccccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHc
Confidence            1100000  00000000011122345679999999999999999999999999976667788999999998888877665


Q ss_pred             CC-cccceeccCchhhhhhhHhhcc
Q 024756          236 ND-IDAWKLTTGVEIMAIVCTVRTH  259 (263)
Q Consensus       236 ~~-~~~~~~~~~~~~~~l~y~g~~~  259 (263)
                      ++ ...|....+...+.++|.|+++
T Consensus       242 ~~~~~~~~~~~~~~~~~i~y~~i~t  266 (358)
T PLN00411        242 KNNPSVWIIHFDITLITIVTMAIIT  266 (358)
T ss_pred             cCCcccceeccchHHHHHHHHHHHH
Confidence            43 3344433344466788888753

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.91  E-value=1.2e-22  Score=180.97  Aligned_cols=216  Identities=13%  Similarity=0.080  Sum_probs=170.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHH-H
Q 024756            8 QNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIG-S   85 (263)
Q Consensus         8 ~~~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~-~   85 (263)
                      +..--.+.++...++||++++++|...+ ++||.+++++|+.++++++++ ...+ |+ + ..+++++.+....|.++ .
T Consensus         5 ~~~~~~~~~~~~~~iWg~~~~~~K~~~~-~~~p~~~~~~R~~~a~l~ll~~~~~~-~~-~-~~~~~~~~~~~~~g~~~~~   80 (292)
T PRK11272          5 QLLPLFGALFALYIIWGSTYLVIRIGVE-SWPPLMMAGVRFLIAGILLLAFLLLR-GH-P-LPTLRQWLNAALIGLLLLA   80 (292)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHHHh-CC-C-CCcHHHHHHHHHHHHHHHH
Confidence            3344456788999999999999999888 899999999999999999888 5433 22 2 23567888888889887 7


Q ss_pred             HHHHHHHhhc-cccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCC
Q 024756           86 SGQIIYFTGL-KFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASST  164 (263)
Q Consensus        86 ~~~~~~~~gl-~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~  164 (263)
                      .++.+++.+. ++++++.++++.++.|+++.+++.+ +|||++++      +++|++++++|+.++..  +..       
T Consensus        81 ~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~------~~~~~~la~~Gv~ll~~--~~~-------  144 (292)
T PRK11272         81 VGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKL------EWLGIAIGLAGIVLLNS--GGN-------  144 (292)
T ss_pred             HHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchh------HHHHHHHHHHhHHHHhc--Ccc-------
Confidence            7888999999 9999999999999999999999975 79999999      99999999999988753  110       


Q ss_pred             CCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCCcccceec
Q 024756          165 SDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLT  244 (263)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~  244 (263)
                                  .+ +...|+++.++++++||.|.+..||..++.  +...+.+++.++++.+.+.....+++...  ..
T Consensus       145 ------------~~-~~~~G~l~~l~a~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  207 (292)
T PRK11272        145 ------------LS-GNPWGAILILIASASWAFGSVWSSRLPLPV--GMMAGAAEMLAAGVVLLIASLLSGERLTA--LP  207 (292)
T ss_pred             ------------cc-cchHHHHHHHHHHHHHHHHHHHHHhcCCCc--chHHHHHHHHHHHHHHHHHHHHcCCcccc--cC
Confidence                        01 123699999999999999999999975443  45667889999998888877654433211  11


Q ss_pred             cCchhhhhhhHhhccc
Q 024756          245 TGVEIMAIVCTVRTHQ  260 (263)
Q Consensus       245 ~~~~~~~l~y~g~~~~  260 (263)
                      +...|..++|+|++++
T Consensus       208 ~~~~~~~i~~l~i~~s  223 (292)
T PRK11272        208 TLSGFLALGYLAVFGS  223 (292)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            1245788888888764

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.89  E-value=6.6e-22  Score=176.80  Aligned_cols=213  Identities=16%  Similarity=0.139  Sum_probs=155.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH-HHHHHHH
Q 024756           13 FVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIG-SSGQIIY   91 (263)
Q Consensus        13 ~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~-~~~~~~~   91 (263)
                      .+..+++.++||.+++++|...+ ++||.++.++|+.++++.+++.. +++    +.+++   .....|++. ...+.++
T Consensus         6 ~l~~l~~~~~Wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~~~l~~~~-~~~----~~~~~---~~~~~g~~~~~~~~~~~   76 (299)
T PRK11453          6 GVLALLVVVVWGLNFVVIKVGLH-NMPPLMLAGLRFMLVAFPAIFFV-ARP----KVPLN---LLLGYGLTISFGQFAFL   76 (299)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHHh-cCC----CCchH---HHHHHHHHHHHHHHHHH
Confidence            35678999999999999999998 79999999999999887766622 121    11222   233446655 5566778


Q ss_pred             Hhhccc-cCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCCC
Q 024756           92 FTGLKF-SSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDH  170 (263)
Q Consensus        92 ~~gl~~-~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~~  170 (263)
                      +.++++ .+++.++++.++.|+++.+++++++|||++++      +++|++++++|+.++..  +..             
T Consensus        77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~------~~~~~~l~~~Gv~ll~~--~~~-------------  135 (299)
T PRK11453         77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGK------QLAGIALAIFGVLVLIE--DSL-------------  135 (299)
T ss_pred             HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHhHHHhcc--ccC-------------
Confidence            899998 48899999999999999999999999999999      99999999999988863  210             


Q ss_pred             CcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCc--hHHHHHHHHHHHHHHHHHHHHHhcCCc---ccceecc
Q 024756          171 PKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPE--EMTVVFFYTFFITIQALCFSVIVENDI---DAWKLTT  245 (263)
Q Consensus       171 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~~~---~~~~~~~  245 (263)
                          .. ......|+++.++++++|+.|++++|+..++.++  ....+.+++..+.+.....+...+++.   ..+....
T Consensus       136 ----~~-~~~~~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (299)
T PRK11453        136 ----NG-QHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTID  210 (299)
T ss_pred             ----CC-cchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCC
Confidence                00 1112369999999999999999999998665532  234456666666665555554444321   1121112


Q ss_pred             CchhhhhhhHhhccc
Q 024756          246 GVEIMAIVCTVRTHQ  260 (263)
Q Consensus       246 ~~~~~~l~y~g~~~~  260 (263)
                      ...|..++|+|++++
T Consensus       211 ~~~~~~l~~l~i~~t  225 (299)
T PRK11453        211 MTTILSLMYLAFVAT  225 (299)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            245889999998875

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.88  E-value=2.3e-21  Score=169.07  Aligned_cols=199  Identities=19%  Similarity=0.151  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHhhccccCc
Q 024756           23 DVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIG-SSGQIIYFTGLKFSSP  100 (263)
Q Consensus        23 wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~-~~~~~~~~~gl~~~~a  100 (263)
                      ||.+++.+|...+++.|+....+.|+..+.+++.+ ...  +     .+++++.+....|.++ .+++.+++.|++++++
T Consensus         1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~   73 (260)
T TIGR00950         1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRR--R-----PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPV   73 (260)
T ss_pred             CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHh--c-----cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCh
Confidence            89999999999876789999999999999888877 432  2     2355667777788887 9999999999999999


Q ss_pred             ceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCCCCcccccccch
Q 024756          101 TLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSE  180 (263)
Q Consensus       101 ~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  180 (263)
                      ++++++.++.|+++.+++.+++|||++++      +++|++++++|+.++.. ++ .                    +.+
T Consensus        74 ~~~~ii~~~~P~~~~~~~~l~~~e~~~~~------~~~gi~i~~~Gv~li~~-~~-~--------------------~~~  125 (260)
T TIGR00950        74 GEAALLLYLAPLYVTLLSDLMGKERPRKL------VLLAAVLGLAGAVLLLS-DG-N--------------------LSI  125 (260)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHhhcc-CC-c--------------------ccc
Confidence            99999999999999999999999999999      99999999999988763 11 0                    112


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHHhcCCcccceeccCchhhhhhhHhhcc
Q 024756          181 WLIGGLLLVLVCISSAIWNVAQAATIRGYP-EEMTVVFFYTFFITIQALCFSVIVENDIDAWKLTTGVEIMAIVCTVRTH  259 (263)
Q Consensus       181 ~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~y~g~~~  259 (263)
                      ...|+.+.++++++|+.+.+..|+..++.+ ++...+.+++.++.+.+.+.....+++. .+   ....|..++|.|+++
T Consensus       126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNP-QA---LSLQWGALLYLGLIG  201 (260)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCC-Cc---chHHHHHHHHHHHHH
Confidence            346999999999999999999999887763 1345555788899888888876544332 11   123466777777665


Q ss_pred             c
Q 024756          260 Q  260 (263)
Q Consensus       260 ~  260 (263)
                      +
T Consensus       202 ~  202 (260)
T TIGR00950       202 T  202 (260)
T ss_pred             H
Confidence            3

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.87  E-value=3.6e-21  Score=171.78  Aligned_cols=217  Identities=13%  Similarity=0.059  Sum_probs=149.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH-HHH
Q 024756            9 NTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIG-SSG   87 (263)
Q Consensus         9 ~~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~-~~~   87 (263)
                      +.++++.++++.++||.+++..|.+.+ ++||..+.++|+.++.+++++.. +++ +.+   ++++ +..+.+.++ ..+
T Consensus         2 ~~~~~l~~l~a~~~Wg~~~~~~k~~~~-~~~P~~~~~~R~~~a~l~l~~~~-~~~-~~~---~~~~-~~~~~~~l~~~~~   74 (295)
T PRK11689          2 SQKATLIGLIAILLWSTMVGLIRGVSE-SLGPVGGAAMIYSVSGLLLLLTV-GFP-RLR---QFPK-RYLLAGGLLFVSY   74 (295)
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHHHHc-ccc-ccc---cccH-HHHHHHhHHHHHH
Confidence            456788899999999999999999998 89999999999999999887721 111 111   1112 223344445 777


Q ss_pred             HHHHHhhccc----cCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCC
Q 024756           88 QIIYFTGLKF----SSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASS  163 (263)
Q Consensus        88 ~~~~~~gl~~----~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s  163 (263)
                      +.+++.++++    +++++++++.++.|+++.+++++++|||++++      +++|++++++|++++... +...+..  
T Consensus        75 ~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~------~~~g~~l~~~Gv~li~~~-~~~~~~~--  145 (295)
T PRK11689         75 EICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWL------LIPGLLLALAGVAWVLGG-DNGLSLA--  145 (295)
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHH------HHHHHHHHHHhHhheecC-Cccchhh--
Confidence            7778887754    57788889999999999999999999999999      999999999999888631 1100000  


Q ss_pred             CCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCCccccee
Q 024756          164 TSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKL  243 (263)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~  243 (263)
                        +       ...+..+...|+++.++|++|||.|+++.||..++. ++.+..   ...+++.+.+.....+++...++ 
T Consensus       146 --~-------~~~~~~~~~~G~~~~l~aa~~~A~~~v~~k~~~~~~-~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~-  211 (295)
T PRK11689        146 --E-------LINNIASNPLSYGLAFIGAFIWAAYCNVTRKYARGK-NGITLF---FILTALALWIKYFLSPQPAMVFS-  211 (295)
T ss_pred             --h-------hhhccccChHHHHHHHHHHHHHHHHHHHHhhccCCC-CchhHH---HHHHHHHHHHHHHHhcCccccCC-
Confidence              0       000001224699999999999999999999988777 465432   23333443333333222211111 


Q ss_pred             ccCchhhhhhhHhh
Q 024756          244 TTGVEIMAIVCTVR  257 (263)
Q Consensus       244 ~~~~~~~~l~y~g~  257 (263)
                        ...|..++|.|+
T Consensus       212 --~~~~~~l~~~~~  223 (295)
T PRK11689        212 --LPAIIKLLLAAA  223 (295)
T ss_pred             --HHHHHHHHHHHH
Confidence              134667777774

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.87  E-value=9.4e-21  Score=169.13  Aligned_cols=186  Identities=9%  Similarity=-0.017  Sum_probs=143.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCC--CC-CCHHHHHHHHHH
Q 024756            5 SWLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKG--AS-LTWSLIWRFFLL   80 (263)
Q Consensus         5 ~~~~~~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~--~~-~~~~~~~~~~l~   80 (263)
                      |++++.+++++++++.++||.+++++|.. + ++||.++.++|+.++.+++++ ...+++++.  ++ .+++++... ..
T Consensus         2 ~~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~-~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   78 (296)
T PRK15430          2 DAKQTRQGVLLALAAYFIWGIAPAYFKLI-Y-YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFML-AV   78 (296)
T ss_pred             CchhhhhHHHHHHHHHHHHHHHHHHHHHh-c-CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHH-HH
Confidence            56788899999999999999999999985 5 799999999999999988877 544321110  01 134444333 35


Q ss_pred             HHHH-HHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCcccc
Q 024756           81 GLIG-SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLL  159 (263)
Q Consensus        81 g~l~-~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~  159 (263)
                      +.++ +.++.++++|++++++++++++.++.|+++.+++++++|||++++      +++|++++++|++++... .    
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~------~~~g~~l~~~Gv~li~~~-~----  147 (296)
T PRK15430         79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRM------QWLAVILAICGVLVQLWT-F----  147 (296)
T ss_pred             HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHH------HHHHHHHHHHHHHHHHHH-c----
Confidence            5555 889999999999999999999999999999999999999999999      999999999999988631 0    


Q ss_pred             ccCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CchHHHHHHHHHHHHHH
Q 024756          160 MASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGY-PEEMTVVFFYTFFITIQ  226 (263)
Q Consensus       160 ~~~s~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~i~  226 (263)
                                       ++ .    ..+.++++++||.|++..|+..++. .+....+.+++.++.+.
T Consensus       148 -----------------~~-~----~~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~  193 (296)
T PRK15430        148 -----------------GS-L----PIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIY  193 (296)
T ss_pred             -----------------CC-c----cHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence                             01 1    1467889999999999999864322 12344455555555544

>TIGR00688 rarD rarD protein

Probab=99.87  E-value=1.8e-20  Score=163.79  Aligned_cols=163  Identities=13%  Similarity=0.045  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcC-----CCCCCHHH-HHHHHHHHHH
Q 024756           11 IPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNK-----GASLTWSL-IWRFFLLGLI   83 (263)
Q Consensus        11 ~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~-----~~~~~~~~-~~~~~l~g~l   83 (263)
                      |++.+++++.++||.+++++|. .+ ++||.+++++|++++.+++++ ...+++++     .++.++++ +..+...|++
T Consensus         2 ~g~~~~i~a~~~wg~~~~~~k~-~~-~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   79 (256)
T TIGR00688         2 KGIIVSLLASFLFGYMYYYSKL-LK-PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL   79 (256)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence            5788999999999999999998 45 699999999999999988877 54432211     11122222 4446667777


Q ss_pred             HHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCC
Q 024756           84 GSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASS  163 (263)
Q Consensus        84 ~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s  163 (263)
                      .+.++.+++++++++++++++++.++.|+++.+++++++|||++++      +++|++++++|++++... +        
T Consensus        80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~------~~l~~~~~~~Gv~li~~~-~--------  144 (256)
T TIGR00688        80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRF------QFIAVIIATLGVISNIVL-K--------  144 (256)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH------HHHHHHHHHHHHHHHHHH-c--------
Confidence            7889999999999999999999999999999999999999999999      999999999999887631 0        


Q ss_pred             CCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 024756          164 TSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRG  208 (263)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~  208 (263)
                                   ++..     .+.++++++|+.|.+..|+..++
T Consensus       145 -------------~~~~-----~~~l~aa~~~a~~~i~~~~~~~~  171 (256)
T TIGR00688       145 -------------GSLP-----WEALVLAFSFTAYGLIRKALKNT  171 (256)
T ss_pred             -------------CCch-----HHHHHHHHHHHHHHHHHhhcCCC
Confidence                         0111     35788999999999999997543

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.84  E-value=1.6e-19  Score=161.00  Aligned_cols=209  Identities=12%  Similarity=0.099  Sum_probs=158.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHH
Q 024756            9 NTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIGSSG   87 (263)
Q Consensus         9 ~~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~   87 (263)
                      +.+++.+++++.++|+.+++++|.+.+ +.||.++.++|++++++++++ ... ++ .  +.++|+++.....|++.+..
T Consensus        10 ~~~~~~~~~la~~~~~~~~~~~K~~~~-~~~~~~~~~~R~~~a~l~l~~~~~~-~~-~--~~~~~~~~~~~~~g~~~~~~   84 (293)
T PRK10532         10 VWLPILLLLIAMASIQSGASLAKSLFP-LVGAPGVTALRLALGTLILIAIFKP-WR-L--RFAKEQRLPLLFYGVSLGGM   84 (293)
T ss_pred             cchHHHHHHHHHHHHHhhHHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHhH-Hh-c--cCCHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999998 699999999999999998887 432 22 1  24567888888888877777


Q ss_pred             HHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCC
Q 024756           88 QIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDS  167 (263)
Q Consensus        88 ~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~  167 (263)
                      +.++++++||+|++.++++.++.|+++.+++    +||++        +..++.++++|+.++.. .+.+          
T Consensus        85 ~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~--------~~~~~~i~~~Gv~li~~-~~~~----------  141 (293)
T PRK10532         85 NYLFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPV--------DFVWVVLAVLGLWFLLP-LGQD----------  141 (293)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChH--------HHHHHHHHHHHHheeee-cCCC----------
Confidence            8889999999999999999999999998876    34433        34567888999988752 1110          


Q ss_pred             CCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCCcccceeccCc
Q 024756          168 PDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLTTGV  247 (263)
Q Consensus       168 ~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~  247 (263)
                              . +.....|+++.++++++|++|.+..|+..++. ++... .++..++++.+.++....++. ..++.   .
T Consensus       142 --------~-~~~~~~G~ll~l~aa~~~a~~~v~~r~~~~~~-~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~~~~---~  206 (293)
T PRK10532        142 --------V-SHVDLTGAALALGAGACWAIYILSGQRAGAEH-GPATV-AIGSLIAALIFVPIGALQAGE-ALWHW---S  206 (293)
T ss_pred             --------c-ccCChHHHHHHHHHHHHHHHHHHHHHHHhccC-CchHH-HHHHHHHHHHHHHHHHHccCc-ccCCH---H
Confidence                    0 11124699999999999999999999988777 46665 566777777777766543321 11111   2


Q ss_pred             hhhhhhhHhhccc
Q 024756          248 EIMAIVCTVRTHQ  260 (263)
Q Consensus       248 ~~~~l~y~g~~~~  260 (263)
                      .+..++|+|++++
T Consensus       207 ~~~~~l~lgv~~t  219 (293)
T PRK10532        207 ILPLGLAVAILST  219 (293)
T ss_pred             HHHHHHHHHHHHH
Confidence            2556678888765

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.81  E-value=3.9e-18  Score=152.49  Aligned_cols=181  Identities=12%  Similarity=0.122  Sum_probs=149.8

Q ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccccCcceeee
Q 024756           26 LSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSA  105 (263)
Q Consensus        26 ~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~~~~gl~~~~a~~asi  105 (263)
                      ..+.-|.++++-.+|..+++.|+.++.+...+.+....+++++.++++++++...|++++.++.+.+.+++|++++.+++
T Consensus        17 ~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~l   96 (302)
T TIGR00817        17 FNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHT   96 (302)
T ss_pred             HHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            34577998883367999999999998877655311111223456789999999999999888899999999999999999


Q ss_pred             ccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCCCCcccccccchhHHHH
Q 024756          106 MANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGG  185 (263)
Q Consensus       106 i~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~G~  185 (263)
                      +.+++|+++.+++++++|||++++      ++.|++++++|+.+...  +.                    .+ ....|+
T Consensus        97 i~~~~Pv~~~ll~~~~~~e~~~~~------~~~~l~l~~~Gv~l~~~--~~--------------------~~-~~~~G~  147 (302)
T TIGR00817        97 IKAMEPFFSVVLSAFFLGQEFPST------LWLSLLPIVGGVALASD--TE--------------------LS-FNWAGF  147 (302)
T ss_pred             HHhcchHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHhhhcC--Cc--------------------cc-ccHHHH
Confidence            999999999999999999999999      99999999999976531  10                    01 124699


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhh--hCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 024756          186 LLLVLVCISSAIWNVAQAATIR--GYPEEMTVVFFYTFFITIQALCFSVIVEN  236 (263)
Q Consensus       186 ~~~l~aa~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~i~~l~~~~~~~~  236 (263)
                      +++++|+++|+++.+..||..+  +. ++...+.+++..+.+.++++....++
T Consensus       148 ~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~  199 (302)
T TIGR00817       148 LSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEG  199 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999887  67 58999999999999999998876654

specificities overlap.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.74  E-value=3.4e-16  Score=143.02  Aligned_cols=198  Identities=15%  Similarity=0.141  Sum_probs=151.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHHH
Q 024756            9 NTIPFVAMVTVECTDVGLSVISKAALTKGMN-KFVSVVYYNALGTLILLPYFLFRRNKGASL--TWSLIWRFFLLGLIGS   85 (263)
Q Consensus         9 ~~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~--~~~~~~~~~l~g~l~~   85 (263)
                      +.+.....+.-..+=.......|.+++ ++| |..++.+|++++.++..+.+..+.++.++.  .+++++.+...|+++.
T Consensus        47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~-~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~  125 (350)
T PTZ00343         47 KWKLALLFLTWYALNVLYVVDNKLALN-MLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHL  125 (350)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            334444444444444566778899988 799 999999999999877655222111222333  2457788889999994


Q ss_pred             HHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCC
Q 024756           86 SGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTS  165 (263)
Q Consensus        86 ~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~  165 (263)
                      ..+...+.++++++++.+.++-+++|++++++++++++||++++      ++.++++++.|+.+...  ++         
T Consensus       126 ~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~------~~l~l~l~v~Gv~l~~~--~~---------  188 (350)
T PTZ00343        126 FVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLY------AYLSLIPIVGGVALASV--KE---------  188 (350)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHheec--cc---------
Confidence            45666779999999999999999999999999999999999999      99999999999999763  11         


Q ss_pred             CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC------chHHHHHHHHHHHHHHHHHHHHHhcC
Q 024756          166 DSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYP------EEMTVVFFYTFFITIQALCFSVIVEN  236 (263)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~------~~~~~~~~~~~~~~i~~l~~~~~~~~  236 (263)
                                 .+. ...|++++++|+++|+++++..|+..++.+      ++.....++..++.+.++++....|.
T Consensus       189 -----------~~~-~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~  253 (350)
T PTZ00343        189 -----------LHF-TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEG  253 (350)
T ss_pred             -----------chh-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                       111 246999999999999999999999877541      35556666788999999988875543

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.74  E-value=9.2e-17  Score=142.33  Aligned_cols=166  Identities=13%  Similarity=0.122  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHh-hcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024756           13 FVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFR-RNKGASLTWSLIWRFFLLGLIGSSGQII   90 (263)
Q Consensus        13 ~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~-~~~~~~~~~~~~~~~~l~g~l~~~~~~~   90 (263)
                      +...++++++|+...+..|...+ +.++.  ..+++..+++++.| ...+. +++++..+++.+......++.+..++.+
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~-~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHAD-KEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLG   79 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCC-chhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence            46678999999999999997665 33443  47777777777777 54321 2223333344444444445555889999


Q ss_pred             HHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCCC
Q 024756           91 YFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDH  170 (263)
Q Consensus        91 ~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~~  170 (263)
                      ++.|+++++++.++.+.++.|+++.+++++++|||++++      +++|+.+++.|++++.. ++.              
T Consensus        80 ~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~------~~~g~~~~~~Gv~ll~~-~~~--------------  138 (281)
T TIGR03340        80 LAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPL------AWLGILIITLGLLVLGL-SRF--------------  138 (281)
T ss_pred             HHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhc-ccc--------------
Confidence            999999999999999999999999999999999999999      99999999999998763 110              


Q ss_pred             CcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 024756          171 PKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGY  209 (263)
Q Consensus       171 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~  209 (263)
                            .+.+ ..|+.+.++++++|++|++..|+..++.
T Consensus       139 ------~~~~-~~g~~~~l~aal~~a~~~i~~k~~~~~~  170 (281)
T TIGR03340       139 ------AQHR-RKAYAWALAAALGTAIYSLSDKAAALGV  170 (281)
T ss_pred             ------cccc-hhHHHHHHHHHHHHHHhhhhccccccch
Confidence                  0111 2478899999999999999998865554

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.68  E-value=5.3e-15  Score=133.35  Aligned_cols=195  Identities=19%  Similarity=0.231  Sum_probs=147.2

Q ss_pred             HHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHH-HHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q 024756           22 TDVGLSVISKAALTKGMN-KFVSVVYYNALGTLILLP-YFLFRRNK-GASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFS   98 (263)
Q Consensus        22 ~wg~~~~~~K~~~~~~~~-p~~~~~~R~~~a~l~ll~-~~~~~~~~-~~~~~~~~~~~~~l~g~l~~~~~~~~~~gl~~~   98 (263)
                      +-..+.+.+....+++.+ |..-.+.-++.-.++..+ ..++++++ ..+..+++|...+++|++...++.+...|++||
T Consensus        24 ~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yT  103 (334)
T PF06027_consen   24 CITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYT  103 (334)
T ss_pred             HHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            345556666655544443 444455555555555556 44433221 122234566677788999999999999999999


Q ss_pred             CcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCCCCccccccc
Q 024756           99 SPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQ  178 (263)
Q Consensus        99 ~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~~~~~~~~~~  178 (263)
                      +.+.+.++.++.-+++.+++++++|||.++.      |++|+++++.|+.++...+...     +         ++...+
T Consensus       104 svtS~~lL~~~~i~~~~~LS~~fL~~ry~~~------~~~gv~i~i~Gv~lv~~sD~~~-----~---------~~~~~~  163 (334)
T PF06027_consen  104 SVTSVQLLDCTSIPFVMILSFIFLKRRYSWF------HILGVLICIAGVVLVVVSDVLS-----G---------SDSSSG  163 (334)
T ss_pred             cHhHHHhhhhhhhHHHHHHHHHHHHhhhhHH------HHHHHHHHHhhhhheeeecccc-----c---------ccCCCC
Confidence            9999999999999999999999999999999      9999999999998887522110     0         011234


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024756          179 SEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVEND  237 (263)
Q Consensus       179 ~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~  237 (263)
                      ++...||+++++++++||++++..++..++. +...+..+..++|.+...+....+|.+
T Consensus       164 ~~~i~GDll~l~~a~lya~~nV~~E~~v~~~-~~~~~lg~~Glfg~ii~~iq~~ile~~  221 (334)
T PF06027_consen  164 SNPILGDLLALLGAILYAVSNVLEEKLVKKA-PRVEFLGMLGLFGFIISGIQLAILERS  221 (334)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHheehh
Confidence            5667899999999999999999999999998 588889999999999988888777654

Some of the sequences in this family are annotated as putative membrane proteins.

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.67  E-value=8.4e-15  Score=128.52  Aligned_cols=186  Identities=22%  Similarity=0.259  Sum_probs=139.8

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH-H
Q 024756            7 LQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIG-S   85 (263)
Q Consensus         7 ~~~~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~-~   85 (263)
                      +++.......++..+.|+.+....|...++..++......|+..+.++..+...+++....+ .++++....+.+.++ .
T Consensus         3 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (292)
T COG0697           3 RALLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRP-ALRPWLLLLLLALLGLA   81 (292)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccc-cccchHHHHHHHHHHHH
Confidence            34455677788888999999999999887437777777889999998855422222111111 122234455556666 9


Q ss_pred             HHHHHHHhhccccCcceeeeccchhHHHHHHHHH-HHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCC
Q 024756           86 SGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAV-IFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASST  164 (263)
Q Consensus        86 ~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~-l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~  164 (263)
                      .++.+++.++++++++.++.+.++.|+++.+++. ++++||++++      ++.|+.+++.|++++... +..       
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~------~~~~~~~~~~Gv~lv~~~-~~~-------  147 (292)
T COG0697          82 LPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLL------QILGILLALAGVLLILLG-GGG-------  147 (292)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHH------HHHHHHHHHHhHHheecC-CCc-------
Confidence            9999999999999999999999999999999997 6679999999      999999999999998741 100       


Q ss_pred             CCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHH-HHHH
Q 024756          165 SDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVF-FYTF  221 (263)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~-~~~~  221 (263)
                                 ..+. ...|+.+.++++++|+++.+..|+.. +. ++..... +++.
T Consensus       148 -----------~~~~-~~~g~~~~l~a~~~~a~~~~~~~~~~-~~-~~~~~~~~~~~~  191 (292)
T COG0697         148 -----------GGIL-SLLGLLLALAAALLWALYTALVKRLS-RL-GPVTLALLLQLL  191 (292)
T ss_pred             -----------chhH-HHHHHHHHHHHHHHHHHHHHHHHHhc-CC-ChHHHHHHHHHH
Confidence                       0011 45799999999999999999999987 55 3555555 4444

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=99.62  E-value=1.5e-15  Score=117.11  Aligned_cols=123  Identities=23%  Similarity=0.384  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHhhcccc
Q 024756           21 CTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIG-SSGQIIYFTGLKFS   98 (263)
Q Consensus        21 ~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~-~~~~~~~~~gl~~~   98 (263)
                      ++||...+..|...+ ++||.+..++|+..+.+ +++ ..+.++++....+.+++......|.++ ..++.+++.+++++
T Consensus         1 ~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   78 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLK-KISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYI   78 (126)
T ss_pred             ceeeeHHHHHHHHhc-cCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhc
Confidence            479999999999988 69999999999999998 555 444443333456778888888889897 99999999999999


Q ss_pred             CcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHH
Q 024756           99 SPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMIT  151 (263)
Q Consensus        99 ~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~  151 (263)
                      +++.++.+.+++|+++.+++++++||+++++      +++|+++.+.|++++.
T Consensus        79 ~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~------~~~g~~l~~~g~~l~~  125 (126)
T PF00892_consen   79 SASIVSILQYLSPVFAAILGWLFLGERPSWR------QIIGIILIIIGVVLIS  125 (126)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999      9999999999998864

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.58  E-value=3e-13  Score=117.56  Aligned_cols=213  Identities=12%  Similarity=0.084  Sum_probs=161.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCC---CCCCHHHHHHHHHHHHHH
Q 024756            9 NTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKG---ASLTWSLIWRFFLLGLIG   84 (263)
Q Consensus         9 ~~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~---~~~~~~~~~~~~l~g~l~   84 (263)
                      ..+|++..+.+.++||..+...|.. + ..|+.++.+.|.+.+.+.++. ....|+.+.   ...++|.+..+.+.+.+.
T Consensus         5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~-~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li   82 (293)
T COG2962           5 SRKGILLALLAYLLWGLLPLYFKLL-E-PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI   82 (293)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH-c-cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence            4679999999999999999999985 4 689999999999999999887 544333211   112445677777778888


Q ss_pred             HHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCC
Q 024756           85 SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASST  164 (263)
Q Consensus        85 ~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~  164 (263)
                      +.+...|.++..+-..-++|.=.+..|++.++++.+++|||+++.      |++++.++.+|+.......          
T Consensus        83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~------Q~iAV~lA~~GV~~~~~~~----------  146 (293)
T COG2962          83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRL------QWIAVGLAAAGVLIQTWLL----------  146 (293)
T ss_pred             HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHH------HHHHHHHHHHHHHHHHHHc----------
Confidence            999999999999999999999999999999999999999999999      9999999999998877521          


Q ss_pred             CCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCCcccceec
Q 024756          165 SDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDIDAWKLT  244 (263)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~  244 (263)
                                  ++..+     ..+.=+++|+.|..+-|+.  +. ++.+-.+..+..-....+...++.+.+.+....+
T Consensus       147 ------------g~lpw-----val~la~sf~~Ygl~RK~~--~v-~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~  206 (293)
T COG2962         147 ------------GSLPW-----VALALALSFGLYGLLRKKL--KV-DALTGLTLETLLLLPVALIYLLFLADSGQFLQQN  206 (293)
T ss_pred             ------------CCCcH-----HHHHHHHHHHHHHHHHHhc--CC-chHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcC
Confidence                        12233     4555678899998876654  44 3566667777777777777766665543211212


Q ss_pred             cCchhhhhhhHhhcc
Q 024756          245 TGVEIMAIVCTVRTH  259 (263)
Q Consensus       245 ~~~~~~~l~y~g~~~  259 (263)
                      .+..++-++..|.++
T Consensus       207 ~~~~~~LLv~aG~vT  221 (293)
T COG2962         207 ANSLWLLLVLAGLVT  221 (293)
T ss_pred             CchHHHHHHHhhHHH
Confidence            334466666666654

>COG2510 Predicted membrane protein [Function unknown]

Probab=99.57  E-value=3.2e-14  Score=109.07  Aligned_cols=133  Identities=17%  Similarity=0.243  Sum_probs=118.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHH
Q 024756           12 PFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKG-ASLTWSLIWRFFLLGLIGSSGQI   89 (263)
Q Consensus        12 ~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~-~~~~~~~~~~~~l~g~l~~~~~~   89 (263)
                      ...+.++++++||...++.|...+ ++||...++.|.+.....+.. ....++.+. ...+.|.|..+++.|+.++++..
T Consensus         4 ~~~~ALLsA~fa~L~~iF~KIGl~-~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl   82 (140)
T COG2510           4 AIIYALLSALFAGLTPIFAKIGLE-GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL   82 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence            467889999999999999999999 899999999999998888887 555433222 12477889999999988899999


Q ss_pred             HHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHH
Q 024756           90 IYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMIT  151 (263)
Q Consensus        90 ~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~  151 (263)
                      +||.++|...++...-+.-+.|++++++++++++||++.+      +++|+++..+|++++.
T Consensus        83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~------~~iG~~LI~~Gailvs  138 (140)
T COG2510          83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLP------TWIGIVLIVIGAILVS  138 (140)
T ss_pred             HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHH------HHHHHHHHHhCeeeEe
Confidence            9999999999999999999999999999999999999999      9999999999998764

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=99.53  E-value=1.2e-15  Score=130.38  Aligned_cols=201  Identities=15%  Similarity=0.186  Sum_probs=144.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024756           11 IPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIGSSGQI   89 (263)
Q Consensus        11 ~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~   89 (263)
                      ++..+..++ ..+..+.++.+...+  .+|.+....|++.-.++..| ..+++..-..+  ..+.+.+++.|+.|+.+..
T Consensus        38 ~gl~l~~vs-~ff~~~~vv~t~~~e--~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp--~g~R~~LiLRg~mG~tgvm  112 (346)
T KOG4510|consen   38 LGLLLLTVS-YFFNSCMVVSTKVLE--NDPMELASFRLLVRMLITYPCLIYYMQPVIGP--EGKRKWLILRGFMGFTGVM  112 (346)
T ss_pred             cCceehhhH-HHHhhHHHhhhhhhc--cChhHhhhhhhhhehhhhheEEEEEeeeeecC--CCcEEEEEeehhhhhhHHH
Confidence            344555555 444444455554444  69999999998888877777 44432211111  2334466788999977888


Q ss_pred             HHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCC
Q 024756           90 IYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPD  169 (263)
Q Consensus        90 ~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~  169 (263)
                      ..|++++|.+.++|++++++.|+++.+++++++|||.++.      ..+|..+.+.|+++++  +.+.....++..|   
T Consensus       113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~------eaL~s~itl~GVVLIv--RPpFlFG~~t~g~---  181 (346)
T KOG4510|consen  113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKF------EALGSLITLLGVVLIV--RPPFLFGDTTEGE---  181 (346)
T ss_pred             HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHH------HHHHHHHhhheEEEEe--cCCcccCCCcccc---
Confidence            8899999999999999999999999999999999999999      9999999999999987  4554332211111   


Q ss_pred             CCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHH
Q 024756          170 HPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSV  232 (263)
Q Consensus       170 ~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~l~~~~  232 (263)
                          +.+.-.....|.+..+.+++.-|...++.|++.|+.+ ....+.+...++.+..++...
T Consensus       182 ----~~s~~~~~~~gt~aai~s~lf~asvyIilR~iGk~~h-~~msvsyf~~i~lV~s~I~~~  239 (346)
T KOG4510|consen  182 ----DSSQVEYDIPGTVAAISSVLFGASVYIILRYIGKNAH-AIMSVSYFSLITLVVSLIGCA  239 (346)
T ss_pred             ----ccccccccCCchHHHHHhHhhhhhHHHHHHHhhcccc-EEEEehHHHHHHHHHHHHHHh
Confidence                1111112245888999999999999999999989884 555566677777776665543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.43  E-value=4.4e-12  Score=113.06  Aligned_cols=180  Identities=16%  Similarity=0.136  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024756           12 PFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIGSSGQII   90 (263)
Q Consensus        12 ~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~   90 (263)
                      ++++.++++++||++.+..|...  +.++.++.  |..++.+++.. ....++ .+ +..++.+..-++.|++-..++.+
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~--g~~~~~~~--~~~~g~l~~~~~~~~~~~-~~-~~~~~~~~~g~l~G~~w~ig~~~   75 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG--GGPYSQTL--GTTFGALILSIAIAIFVL-PE-FWALSIFLVGLLSGAFWALGQIN   75 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC--CCHHHHHH--HHHHHHHHHHHHHHHHhC-Cc-ccccHHHHHHHHHHHHHHhhhhh
Confidence            35778899999999999999854  67887775  78888887776 444332 11 11234444455556666888899


Q ss_pred             HHhhccccCcceeeeccc-hhHHHHHHHHHHHhhccccccccCcccc----chhHHHHHHHHHHHHhhcCccccccCCCC
Q 024756           91 YFTGLKFSSPTLSSAMAN-LIPIYTFLLAVIFRIEKLDLRRSSSQAK----TLGATVAVTGAFMITLYRGPLLLMASSTS  165 (263)
Q Consensus        91 ~~~gl~~~~a~~asii~~-~~Pv~~~ila~l~~~e~~~~~~~~~~~~----~~g~~l~~~G~~ll~~~~~~~~~~~~s~~  165 (263)
                      |+.++++++.+.+..+.+ +.|++..+.+.+++|||.+++      +    ++|++++++|++++... +++ +.     
T Consensus        76 ~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~------~~~~~~~g~~l~l~G~~l~~~~-~~~-~~-----  142 (290)
T TIGR00776        76 QFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSI------QTLLGLLALILIIIGVYLTSRS-KDK-SA-----  142 (290)
T ss_pred             HHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchH------HHHHHHHHHHHHHHhHheEEec-ccc-cc-----
Confidence            999999999999998877 888899999999999999999      8    99999999998887531 110 00     


Q ss_pred             CCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHH
Q 024756          166 DSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTF  221 (263)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~  221 (263)
                              +.....+...|..+.++|+++|+.|.+..|+.  +. +|.+.++.+..
T Consensus       143 --------~~~~~~~~~~Gi~~~l~sg~~y~~~~~~~~~~--~~-~~~~~~~~~~~  187 (290)
T TIGR00776       143 --------GIKSEFNFKKGILLLLMSTIGYLVYVVVAKAF--GV-DGLSVLLPQAI  187 (290)
T ss_pred             --------ccccccchhhHHHHHHHHHHHHHHHHHHHHHc--CC-CcceehhHHHH
Confidence                    00000233569999999999999999999985  46 57777444443

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.40  E-value=3.7e-12  Score=110.93  Aligned_cols=131  Identities=20%  Similarity=0.269  Sum_probs=112.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 024756            8 QNTIPFVAMVTVECTDVGLSVISKAALTKGMNK--FVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIG   84 (263)
Q Consensus         8 ~~~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p--~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~   84 (263)
                      .+.++..+.+++.++|+...+..|...+ +.++  .....+|+.++.+++.+ ....++  ....+.+++......++++
T Consensus       125 ~~~~G~~~~l~a~~~~a~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  201 (260)
T TIGR00950       125 INPAGLLLGLGSGISFALGTVLYKRLVK-KEGPELLQFTGWVLLLGALLLLPFAWFLGP--NPQALSLQWGALLYLGLIG  201 (260)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHHHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHHHHH
Confidence            3457889999999999999999999876 5664  45566789999999888 554332  2234677887788888888


Q ss_pred             -HHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHH
Q 024756           85 -SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGA  147 (263)
Q Consensus        85 -~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~  147 (263)
                       ..++.+|++++++.+++.++++.+++|+++.++++++++|+++.+      ++.|..+.+.|+
T Consensus       202 ~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~------~~~G~~li~~g~  259 (260)
T TIGR00950       202 TALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLP------QLIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHhc
Confidence             899999999999999999999999999999999999999999999      999999999986

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.35  E-value=1.1e-10  Score=99.58  Aligned_cols=186  Identities=16%  Similarity=0.124  Sum_probs=148.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024756           12 PFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIY   91 (263)
Q Consensus        12 ~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~~   91 (263)
                      ++++++.+.+.-=...-+.|..+. ..+|.-.+++|..+++++++..+.-+|   ++++++++..+...|...+.-+.+|
T Consensus        13 p~~~ll~amvsiq~Gas~Ak~LFP-~vG~~g~t~lRl~~aaLIll~l~RPwr---~r~~~~~~~~~~~yGvsLg~MNl~F   88 (292)
T COG5006          13 PILALLVAMVSIQSGASFAKSLFP-LVGAAGVTALRLAIAALILLALFRPWR---RRLSKPQRLALLAYGVSLGGMNLLF   88 (292)
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHcc-ccChhhHHHHHHHHHHHHHHHHhhHHH---hccChhhhHHHHHHHHHHHHHHHHH
Confidence            678888888887777889999998 799999999999999999888322122   3467889999888888888888999


Q ss_pred             HhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCCCC
Q 024756           92 FTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHP  171 (263)
Q Consensus        92 ~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~~~  171 (263)
                      |.++++.|-+.+..+=++-|+.++.++.    +|  .+      ..+-+.+++.|..++.- .++.              
T Consensus        89 Y~si~riPlGiAVAiEF~GPL~vA~~~s----Rr--~~------d~vwvaLAvlGi~lL~p-~~~~--------------  141 (292)
T COG5006          89 YLSIERIPLGIAVAIEFTGPLAVALLSS----RR--LR------DFVWVALAVLGIWLLLP-LGQS--------------  141 (292)
T ss_pred             HHHHHhccchhhhhhhhccHHHHHHHhc----cc--hh------hHHHHHHHHHHHHhhee-ccCC--------------
Confidence            9999999999999999999998887753    11  22      56677888999888752 1211              


Q ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHh
Q 024756          172 KLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIV  234 (263)
Q Consensus       172 ~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~  234 (263)
                           .+.....|..+.+.++.||+.|++..||..+.. +..+-+...+.++.+..+++....
T Consensus       142 -----~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~-~g~~g~a~gm~vAaviv~Pig~~~  198 (292)
T COG5006         142 -----VWSLDPVGVALALGAGACWALYIVLGQRAGRAE-HGTAGVAVGMLVAALIVLPIGAAQ  198 (292)
T ss_pred             -----cCcCCHHHHHHHHHHhHHHHHHHHHcchhcccC-CCchHHHHHHHHHHHHHhhhhhhh
Confidence                 111224799999999999999999999988766 456778889999999999988643

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=99.24  E-value=1.4e-11  Score=94.57  Aligned_cols=101  Identities=26%  Similarity=0.432  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHH-HHHHhhcC--CCCCCHHHHHHHHHHHHHH-HHHHHHHHhhccccCcceeeeccchhHHHHHHHHHH
Q 024756           45 VYYNALGTLILLP-YFLFRRNK--GASLTWSLIWRFFLLGLIG-SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVI  120 (263)
Q Consensus        45 ~~R~~~a~l~ll~-~~~~~~~~--~~~~~~~~~~~~~l~g~l~-~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l  120 (263)
                      .+|+.++.+++.. ...++|.+  .+..+++++...+..|.++ ..++.++++|+++.+ +.++.+.++.|+++.+++.+
T Consensus         2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~   80 (113)
T PF13536_consen    2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL   80 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence            5899999999888 66543211  1223335566667778888 699999999999999 58889999999999999999


Q ss_pred             HhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756          121 FRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus       121 ~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      ++|||++++      +++|++++++|++++..
T Consensus        81 ~~~er~~~~------~~~a~~l~~~Gv~li~~  106 (113)
T PF13536_consen   81 FFKERLSPR------RWLAILLILIGVILIAW  106 (113)
T ss_pred             HhcCCCCHH------HHHHHHHHHHHHHHHhh
Confidence            999999999      99999999999999875

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.20  E-value=3e-10  Score=101.35  Aligned_cols=133  Identities=14%  Similarity=0.080  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHH-HHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIG-SSG   87 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~-~~~   87 (263)
                      ..+.++.++++++|+...+..|...+ +.++...... ..++++++.+ ......  ....+...+.....+|+++ .++
T Consensus       147 ~~G~ll~l~aa~~~a~~~v~~r~~~~-~~~~~~~~~~-~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l~lgv~~t~~~  222 (293)
T PRK10532        147 LTGAALALGAGACWAIYILSGQRAGA-EHGPATVAIG-SLIAALIFVPIGALQAG--EALWHWSILPLGLAVAILSTALP  222 (293)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHH-HHHHHHHHHHHHHHccC--cccCCHHHHHHHHHHHHHHHHHH
Confidence            45888999999999999999999765 6788777544 4556666666 443221  1224556666667889998 899


Q ss_pred             HHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           88 QIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        88 ~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      +.+|++++++.++++++.+.+++|+++.++++++++|+++..      +++|..+.+.|++....
T Consensus       223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~------~~iG~~lIl~~~~~~~~  281 (293)
T PRK10532        223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLI------QWLALGAIIAASMGSTL  281 (293)
T ss_pred             HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999      99999999999988865

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.20  E-value=2.8e-10  Score=101.41  Aligned_cols=135  Identities=19%  Similarity=0.087  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHH-HHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIG-SSG   87 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~-~~~   87 (263)
                      ..+.++.++++++|+...+..|....  -++....++++.++.+.+.+ ............+.+.|..+...++++ ..+
T Consensus       149 ~~G~l~~l~a~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~  226 (292)
T PRK11272        149 PWGAILILIASASWAFGSVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA  226 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence            46888999999999999999998543  34566778899999888877 543322111123567888888889998 899


Q ss_pred             HHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           88 QIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        88 ~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      +.+|++++++.++++++++.+++|+++.++++++++|+++..      +++|.++.+.|++++..
T Consensus       227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~------~iiG~~lIi~gv~~~~~  285 (292)
T PRK11272        227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI------EWLALGVIVFAVVLVTL  285 (292)
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999      99999999999988764

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=99.18  E-value=8.2e-11  Score=105.31  Aligned_cols=134  Identities=20%  Similarity=0.243  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCcccc
Q 024756           80 LGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLL  159 (263)
Q Consensus        80 ~g~l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~  159 (263)
                      .+.+-+.++++++.++.+|+.+..+++.++..+|+..++.++..||+++.      |.+++.+.+.|++++...+..  +
T Consensus       165 fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~s------Kllav~~si~GViiVt~~~s~--~  236 (416)
T KOG2765|consen  165 FCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLS------KLLAVFVSIAGVIIVTMGDSK--Q  236 (416)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHH------HHHHHHHhhccEEEEEecccc--c
Confidence            45555999999999999999999999999999999999999999999999      999999999999998753211  1


Q ss_pred             ccCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC---chHHHHHHHHHHHHHHHHHHHHHh
Q 024756          160 MASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYP---EEMTVVFFYTFFITIQALCFSVIV  234 (263)
Q Consensus       160 ~~~s~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~i~~l~~~~~~  234 (263)
                      .             ++....+...|+++++++|+.||+|+++.||-..+.+   +.-.+-.+..++..+++.+..+++
T Consensus       237 ~-------------~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL  301 (416)
T KOG2765|consen  237 N-------------SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIIL  301 (416)
T ss_pred             c-------------ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHH
Confidence            0             1112345578999999999999999999999766652   122222334444444444444433

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.15  E-value=1.1e-09  Score=100.49  Aligned_cols=133  Identities=11%  Similarity=0.122  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHH-HHHHhhcCC----CCCCHHHHHHHHHHHHHHH
Q 024756           12 PFVAMVTVECTDVGLSVISKAALTKGMNK-FVSVVYYNALGTLILLP-YFLFRRNKG----ASLTWSLIWRFFLLGLIGS   85 (263)
Q Consensus        12 ~~~~~l~a~~~wg~~~~~~K~~~~~~~~p-~~~~~~R~~~a~l~ll~-~~~~~~~~~----~~~~~~~~~~~~l~g~l~~   85 (263)
                      +...++.++++|+...+..|.... ..|+ ...+++...++.+.+.+ .....+...    ...+.. ...++..++...
T Consensus       190 G~~l~l~aa~~wa~~~il~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~y~~i~t~  267 (358)
T PLN00411        190 GGALLTIQGIFVSVSFILQAHIMS-EYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDIT-LITIVTMAIITS  267 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchH-HHHHHHHHHHHH
Confidence            667899999999999999998776 4544 46677777777666655 444332111    112222 222444565557


Q ss_pred             HHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           86 SGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        86 ~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      +++.+|++++++.+|+.++++.+++|+++.++++++++|+++..      +++|.++.+.|+.+...
T Consensus       268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~------~~iG~~LIl~Gv~l~~~  328 (358)
T PLN00411        268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLG------CLIGGILITLGFYAVMW  328 (358)
T ss_pred             HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHHh
Confidence            78899999999999999999999999999999999999999999      99999999999998864

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.11  E-value=9e-10  Score=98.33  Aligned_cols=132  Identities=16%  Similarity=0.196  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIGSSGQ   88 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~   88 (263)
                      ..+.+++++++++|+...+..|...+ +.++....   +..+.+.+.+ .... .......+.+.+..+.+.|+...+++
T Consensus       155 ~~G~~~~l~aa~~~A~~~v~~k~~~~-~~~~~~~~---~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~t~~~~  229 (295)
T PRK11689        155 PLSYGLAFIGAFIWAAYCNVTRKYAR-GKNGITLF---FILTALALWIKYFLS-PQPAMVFSLPAIIKLLLAAAAMGFGY  229 (295)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccC-CCCchhHH---HHHHHHHHHHHHHHh-cCccccCCHHHHHHHHHHHHHHHHHH
Confidence            34788999999999999999999765 67876643   2333344444 3332 21112355677777777775448899


Q ss_pred             HHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           89 IIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        89 ~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      .+|++++|+.++++++.+.+++|++..++++++++|+++..      +++|.++.+.|+++...
T Consensus       230 ~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~------~~iG~~lI~~gv~~~~~  287 (295)
T PRK11689        230 AAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFS------FWQGVAMVTAGSLLCWL  287 (295)
T ss_pred             HHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHhHHHHhh
Confidence            99999999999999999999999999999999999999999      99999999999988754

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.06  E-value=2.1e-09  Score=95.29  Aligned_cols=132  Identities=15%  Similarity=0.092  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHH----HHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKGMNKFV----SVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIG   84 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~----~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~   84 (263)
                      .++..+.++++++|+...+..|...+ +.+|..    ...+.+....+.+.+ ...++++ ....+.+.+......+.+.
T Consensus       143 ~~g~~~~l~aal~~a~~~i~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  220 (281)
T TIGR03340       143 RKAYAWALAAALGTAIYSLSDKAAAL-GVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SMFPYARQILPSATLGGLM  220 (281)
T ss_pred             hhHHHHHHHHHHHHHHhhhhcccccc-chhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-chhhhHHHHHHHHHHHHHH
Confidence            45667789999999999999987543 344432    223333333222222 2111111 1111222333444555555


Q ss_pred             -HHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHH
Q 024756           85 -SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFM  149 (263)
Q Consensus        85 -~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~l  149 (263)
                       ..++.+|++++++.+++.++.+.+++|++..++++++++|+++..      +++|..+.+.|+.+
T Consensus       221 s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~------~~iG~~lil~Gv~l  280 (281)
T TIGR03340       221 IGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLT------RLMGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHhHHh
Confidence             889999999999999999999999999999999999999999999      99999999999876

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=98.96  E-value=1.5e-08  Score=90.62  Aligned_cols=136  Identities=14%  Similarity=0.190  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHHHHH-HHHHhhcC-----CCCCCHHHHHHHHHHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKGMN--KFVSVVYYNALGTLILLP-YFLFRRNK-----GASLTWSLIWRFFLLG   81 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~--p~~~~~~R~~~a~l~ll~-~~~~~~~~-----~~~~~~~~~~~~~l~g   81 (263)
                      ..+.++.++++++|+...+..|...++.-+  ......+-...+.+.+.. ....++..     ....+.+.|..+...|
T Consensus       142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  221 (299)
T PRK11453        142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence            458889999999999999999986542212  223334444444433333 22222111     1234667888888999


Q ss_pred             HHH-HHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHH
Q 024756           82 LIG-SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMIT  151 (263)
Q Consensus        82 ~l~-~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~  151 (263)
                      ++. ..++.+|+.++++.++++++.+.+++|++..++++++++|+++..      +++|.++.+.|+.+..
T Consensus       222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~------~~iG~~lI~~gv~l~~  286 (299)
T PRK11453        222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGL------QFLGAVLIMAGLYINV  286 (299)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHh
Confidence            999 899999999999999999999999999999999999999999999      9999999999998765

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=98.95  E-value=7.5e-08  Score=86.30  Aligned_cols=172  Identities=17%  Similarity=0.166  Sum_probs=133.9

Q ss_pred             hHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccccCcceeeeccchhHHHHHHHH
Q 024756           40 KFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLA  118 (263)
Q Consensus        40 p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila  118 (263)
                      |..+++.++....+.-.+ ....+++   +.++..+......+++..++..+-+.+++|.|...-.++-++.|+.+++++
T Consensus        32 ~~~lt~~q~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~  108 (303)
T PF08449_consen   32 PLFLTFVQFAFNALFSFILLSLFKFP---KSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILG  108 (303)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcccc---CCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHH
Confidence            888999999998887766 4333211   223344556677788888899999999999999998999999999999999


Q ss_pred             HHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHH
Q 024756          119 VIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIW  198 (263)
Q Consensus       119 ~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~  198 (263)
                      .+++|+|.+++      +++++++..+|+++....+.....             .+...+.+...|+.+.+++.++-+..
T Consensus       109 ~l~~~k~y~~~------~~~~v~li~~Gv~~~~~~~~~~~~-------------~~~~~~~~~~~G~~ll~~sl~~~a~~  169 (303)
T PF08449_consen  109 VLILGKRYSRR------QYLSVLLITIGVAIFTLSDSSSSS-------------SSNSSSFSSALGIILLLLSLLLDAFT  169 (303)
T ss_pred             HHhcCccccHH------HHHHHHHHHhhHheeeeccccccc-------------ccccccccchhHHHHHHHHHHHHHHH
Confidence            99999999999      999999999999887653211100             00111112234999999999999999


Q ss_pred             HHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHH
Q 024756          199 NVAQAATIRGYP-EEMTVVFFYTFFITIQALCFSVI  233 (263)
Q Consensus       199 ~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~  233 (263)
                      .+.+++..++++ ++...+++...++.+..++....
T Consensus       170 ~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~  205 (303)
T PF08449_consen  170 GVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFL  205 (303)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999887664 57888899999999888877766

; GO: 0055085 transmembrane transport

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=98.86  E-value=1e-08  Score=91.73  Aligned_cols=138  Identities=19%  Similarity=0.233  Sum_probs=104.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCC---------CCHHHHHH-
Q 024756            9 NTIPFVAMVTVECTDVGLSVISKAALTK-GMNKFVSVVYYNALGTLILLP-YFLFRRNKGAS---------LTWSLIWR-   76 (263)
Q Consensus         9 ~~~~~~~~l~a~~~wg~~~~~~K~~~~~-~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~---------~~~~~~~~-   76 (263)
                      +..|.++.++++++|+...+..|...++ +.||..+..+....+++.++| ....+......         .+...... 
T Consensus       143 ~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (302)
T TIGR00817       143 NWAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV  222 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence            3458889999999999999999987641 589999999999999999888 65433111000         00001111 


Q ss_pred             HHHHHHHH-HHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           77 FFLLGLIG-SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        77 ~~l~g~l~-~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      ....+... ...+.+++.++++++++.+++..+..|++++++++++++|+++.+      +++|.++.+.|+.+...
T Consensus       223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~------~~~G~~lil~Gv~l~~~  293 (302)
T TIGR00817       223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ------QVFGTGIAIAGVFLYSR  293 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh------HHHHHHHHHHHHHHHHH
Confidence            22223222 334467778999999999999999999999999999999999999      99999999999988763

specificities overlap.

>KOG2766 consensus Predicted membrane protein [Function unknown]

Probab=98.82  E-value=2e-10  Score=98.08  Aligned_cols=190  Identities=15%  Similarity=0.164  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 024756           16 MVTVECTDVGLSVISKAALTKGMN-KFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFT   93 (263)
Q Consensus        16 ~l~a~~~wg~~~~~~K~~~~~~~~-p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~~~~   93 (263)
                      -+++.++=+.++..... .+++++ |..-++..+..-+++..| ..+|++     .-+-.|...+++|+...-++++...
T Consensus        24 QiLSL~~t~~a~tss~l-a~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~-----~~~~~~~hYilla~~DVEaNy~vV~   97 (336)
T KOG2766|consen   24 QILSLLITSTAFTSSEL-ARKGINAPTSQTFLNYVLLALVYGPIMLFRRK-----YIKAKWRHYILLAFVDVEANYFVVK   97 (336)
T ss_pred             HHHHHHHHcchhhhHHH-HhccCCCccHHHHHHHHHHHHHHhhHHHhhhH-----HHHHHHHHhhheeEEeecccEEEee
Confidence            34444444444443333 333444 556688888888888888 666432     2233455678888888888888899


Q ss_pred             hccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCCCCcc
Q 024756           94 GLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKL  173 (263)
Q Consensus        94 gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~~~~~  173 (263)
                      +.|||+-+....+.+-.-..+.+++++++|.|-++.      |+.|+++|+.|++++++.+          .+.    + 
T Consensus        98 AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlm------ki~gV~iCi~GvvmvV~sD----------V~a----g-  156 (336)
T KOG2766|consen   98 AYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLM------KISGVVICIVGVVMVVFSD----------VHA----G-  156 (336)
T ss_pred             ehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhh------eeeeEEeEecceEEEEEee----------ecc----c-
Confidence            999999999888876655566689999999999999      9999999999999988521          111    0 


Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHH
Q 024756          174 LFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVI  233 (263)
Q Consensus       174 ~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~  233 (263)
                      +.+++++...||.+++++|.+||+.++......|+. +....+....++|++...+...+
T Consensus       157 d~aggsnp~~GD~lvi~GATlYaVSNv~EEflvkn~-d~~elm~~lgLfGaIIsaIQ~i~  215 (336)
T KOG2766|consen  157 DRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVKNA-DRVELMGFLGLFGAIISAIQFIF  215 (336)
T ss_pred             cccCCCCCccCcEEEEecceeeeeccccHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhh
Confidence            223456667899999999999999999999999999 58999999999999998888443

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=98.76  E-value=2.6e-07  Score=80.44  Aligned_cols=153  Identities=14%  Similarity=0.118  Sum_probs=114.1

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHH
Q 024756           70 TWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFM  149 (263)
Q Consensus        70 ~~~~~~~~~l~g~l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~l  149 (263)
                      ++|+.....+=+++..+.+.+.|.++++.+|+.-.++..+--+++++++++++|+|++++      ||.++.+.+.|+.+
T Consensus        13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~------qW~aL~lL~~Gv~l   86 (244)
T PF04142_consen   13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRR------QWLALFLLVAGVVL   86 (244)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchh------hHHHHHHHHHHHhe
Confidence            356666677778888889999999999999999999999999999999999999999999      99999999999998


Q ss_pred             HHhhcCccccccCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHH
Q 024756          150 ITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYP-EEMTVVFFYTFFITIQAL  228 (263)
Q Consensus       150 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~l  228 (263)
                      ....+....+   + ++.  .+.++...+.+...|.++.++++++-++..+..+|..|+.+ +....+....+.|.+..+
T Consensus        87 v~~~~~~~~~---~-~~~--~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~  160 (244)
T PF04142_consen   87 VQLSSSQSSD---N-SSS--SSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNL  160 (244)
T ss_pred             eecCCccccc---c-ccc--cccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHH
Confidence            7642111100   0 000  00001112334578999999999999999999999988774 355555666666666665


Q ss_pred             HHHHHh
Q 024756          229 CFSVIV  234 (263)
Q Consensus       229 ~~~~~~  234 (263)
                      +...+.
T Consensus       161 ~~~~~~  166 (244)
T PF04142_consen  161 LALLLS  166 (244)
T ss_pred             HHHhcc
Confidence            554443

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.74  E-value=1.3e-07  Score=84.40  Aligned_cols=133  Identities=11%  Similarity=0.099  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 024756           14 VAMVTVECTDVGLSVISKAALTKG-MNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYF   92 (263)
Q Consensus        14 ~~~l~a~~~wg~~~~~~K~~~~~~-~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~~~   92 (263)
                      ...++++++|+...+..|....+. .+......+-..++.+...+............+...+......|+....++.+|+
T Consensus       152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~~  231 (296)
T PRK15430        152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCFT  231 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            346778899999999999864311 2233334444444443322211000000111122333444455665588999999


Q ss_pred             hhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           93 TGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        93 ~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      .++++.+++.++.+.+++|++..++++++++|+++..      +++|.++.+.|+.++..
T Consensus       232 ~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~------~~~G~~lI~~~~~v~~~  285 (296)
T PRK15430        232 AAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGAD------KMVTFAFIWVALAIFVM  285 (296)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999      99999999999888764

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=98.72  E-value=2.4e-07  Score=74.18  Aligned_cols=132  Identities=25%  Similarity=0.365  Sum_probs=110.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHH-HHHHhhcCCC----CC-------CHHH
Q 024756           12 PFVAMVTVECTDVGLSVISKAALTK------GMNKFVSVVYYNALGTLILLP-YFLFRRNKGA----SL-------TWSL   73 (263)
Q Consensus        12 ~~~~~l~a~~~wg~~~~~~K~~~~~------~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~----~~-------~~~~   73 (263)
                      |+.+.+.+.++-+...+..|...++      ..++.++..+....+.++++| ....++.+..    ..       +.+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF   80 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence            4567889999999999999998875      689999999999999999999 7665443210    00       2233


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHH
Q 024756           74 IWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFM  149 (263)
Q Consensus        74 ~~~~~l~g~l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~l  149 (263)
                      +..++..|++....+...+..+++++|...++....-.+.+.+.++++++|+++.+      ++.|+++++.|.++
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~------~~~G~~l~~~G~~~  150 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPL------QIIGIVLALVGVLL  150 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHH------HHHHHHHHHHHHhe
Confidence            45555667777889999999999999999999999999999999999999999999      99999999999864

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=98.68  E-value=2.4e-07  Score=82.60  Aligned_cols=128  Identities=16%  Similarity=0.152  Sum_probs=101.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH---HHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNA---LGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIGS   85 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~---~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~~   85 (263)
                      ++++.+.+++.+.|+...+..|..   +.||...++....   +++.++.+ .  ++  .++. +.+......+.|++-.
T Consensus       151 ~~Gi~~~l~sg~~y~~~~~~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~--~~--~~~~-~~~~~~~~~~~Gi~~~  222 (290)
T TIGR00776       151 KKGILLLLMSTIGYLVYVVVAKAF---GVDGLSVLLPQAIGMVIGGIIFNLGH--IL--AKPL-KKYAILLNILPGLMWG  222 (290)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHc---CCCcceehhHHHHHHHHHHHHHHHHH--hc--ccch-HHHHHHHHHHHHHHHH
Confidence            679999999999999999999974   4788888544444   44444444 3  11  1222 2233334445788778


Q ss_pred             HHHHHHHhhcc-ccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccc----hhHHHHHHHHHHHH
Q 024756           86 SGQIIYFTGLK-FSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKT----LGATVAVTGAFMIT  151 (263)
Q Consensus        86 ~~~~~~~~gl~-~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~----~g~~l~~~G~~ll~  151 (263)
                      .++.+|+.+.+ +.+++.++++.+.+|+...+++++++||+.+++      ++    +|.++.+.|+.++.
T Consensus       223 ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~------~~~~~~iG~~lIi~~~~l~~  287 (290)
T TIGR00776       223 IGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKR------EMIAISVGIILIIIAANILG  287 (290)
T ss_pred             HHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcc------eeehhHHHHHHHHHHHHHHh
Confidence            89999999999 999999999999999999999999999999999      99    99999999998874

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=98.67  E-value=4.7e-07  Score=82.89  Aligned_cols=137  Identities=15%  Similarity=0.163  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHHHHH-HHHHhhcCC-C-------CCCHHH
Q 024756            9 NTIPFVAMVTVECTDVGLSVISKAALTK------GMNKFVSVVYYNALGTLILLP-YFLFRRNKG-A-------SLTWSL   73 (263)
Q Consensus         9 ~~~~~~~~l~a~~~wg~~~~~~K~~~~~------~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~-~-------~~~~~~   73 (263)
                      +..|.++.+++.++|+...+..|...++      ..++.....+...+++++++| ....+.... .       ..+...
T Consensus       192 ~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~  271 (350)
T PTZ00343        192 TWLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT  271 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence            4568999999999999999999998762      256777777778899999888 553321100 0       000001


Q ss_pred             HHHHHHHHHHHHHHHHHHH----hhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHH
Q 024756           74 IWRFFLLGLIGSSGQIIYF----TGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFM  149 (263)
Q Consensus        74 ~~~~~l~g~l~~~~~~~~~----~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~l  149 (263)
                      +..+....+..+..+.+++    .+++++++..+++..++.|+++.++++++++|+++..      +++|.++.+.|+++
T Consensus       272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~------~~iG~~lii~Gv~l  345 (350)
T PTZ00343        272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLL------GYLGMAVAILGALL  345 (350)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchH------hHHHHHHHHHHHHH
Confidence            1111111222244444444    6999999999999999999999999999999999999      99999999999987


Q ss_pred             HH
Q 024756          150 IT  151 (263)
Q Consensus       150 l~  151 (263)
                      -.
T Consensus       346 Ys  347 (350)
T PTZ00343        346 YS  347 (350)
T ss_pred             Hh
Confidence            54

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=98.67  E-value=5.4e-07  Score=78.85  Aligned_cols=132  Identities=18%  Similarity=0.279  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH-HHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVV-YYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIG-SSG   87 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~-~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~-~~~   87 (263)
                      ..+..+.+.+.++|+...+..|...  ..++..... +.+........+.....+ . ...+.+.+......|+++ ..+
T Consensus       153 ~~g~~~~l~a~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~g~~~~~i~  228 (292)
T COG0697         153 LLGLLLALAAALLWALYTALVKRLS--RLGPVTLALLLQLLLALLLLLLFFLSGF-G-APILSRAWLLLLYLGVFSTGLA  228 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHHHHhccc-c-ccCCHHHHHHHHHHHHHHHHHH
Confidence            4688999999999999999999765  466766666 444422222222222111 1 234567888888899999 689


Q ss_pred             HHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHH
Q 024756           88 QIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMIT  151 (263)
Q Consensus        88 ~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~  151 (263)
                      +.+++.++++.+++.++.+.++.|++..++++++++|+++..      +++|..+.+.|+.+..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~------~~~G~~li~~g~~l~~  286 (292)
T COG0697         229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA------QLLGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHH------HHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999      9999999999998875

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.50  E-value=7.7e-07  Score=68.11  Aligned_cols=67  Identities=18%  Similarity=0.205  Sum_probs=61.7

Q ss_pred             HHHHHH-HHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHH
Q 024756           79 LLGLIG-SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMIT  151 (263)
Q Consensus        79 l~g~l~-~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~  151 (263)
                      ..++.+ ..++.++..++++.|.+.|-.+.++.|+++.+++++++|||++.+      |++|+.+.++|++++.
T Consensus        41 ~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~------~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         41 GLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPR------HWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHh
Confidence            344466 889999999999999999999988999999999999999999999      9999999999998874

>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]

Probab=98.34  E-value=0.00048  Score=62.08  Aligned_cols=205  Identities=12%  Similarity=0.116  Sum_probs=142.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHH-HHHHh----hcCCCCC------CHHHHHHH
Q 024756           12 PFVAMVTVECTDVGLSVISKAALTKG---MNKFVSVVYYNALGTLILLP-YFLFR----RNKGASL------TWSLIWRF   77 (263)
Q Consensus        12 ~~~~~l~a~~~wg~~~~~~K~~~~~~---~~p~~~~~~R~~~a~l~ll~-~~~~~----~~~~~~~------~~~~~~~~   77 (263)
                      -++.++...+-++......|+.-..+   +.|.+.++.--++-.++-.. .+...    ++..+.+      ++++....
T Consensus        16 k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~   95 (345)
T KOG2234|consen   16 KYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKV   95 (345)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHH
Confidence            34567788888999999999876544   56777777666666555444 33321    1111111      22333444


Q ss_pred             HHHHHHHHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCcc
Q 024756           78 FLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPL  157 (263)
Q Consensus        78 ~l~g~l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~  157 (263)
                      .+=+.+.++.+-++|.++.+.+++.-.+...+--+.|+++..+++++|++++      ||.++++.++|+.++-.. .+.
T Consensus        96 ~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~------Qw~Al~lL~~Gv~~vQ~~-~~~  168 (345)
T KOG2234|consen   96 SVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRL------QWMALVLLFAGVALVQLP-SLS  168 (345)
T ss_pred             HHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHHHhcc-CCC
Confidence            4446666777889999999999999999999999999999999999999999      999999999999998631 111


Q ss_pred             ccccCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHHh
Q 024756          158 LLMASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYP-EEMTVVFFYTFFITIQALCFSVIV  234 (263)
Q Consensus       158 ~~~~~s~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~  234 (263)
                      .    ++.       .......+...|....+.++++-++-.+.-.++.|+-. +....+.-..++|.+..+...+..
T Consensus       169 ~----~~a-------~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~  235 (345)
T KOG2234|consen  169 P----TGA-------KSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQ  235 (345)
T ss_pred             C----CCc-------cCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhc
Confidence            0    000       00111234568999999999999999999999987653 344455555666666555554443

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=98.27  E-value=3.6e-06  Score=75.59  Aligned_cols=181  Identities=17%  Similarity=0.166  Sum_probs=140.2

Q ss_pred             HHHHHHHHh--cCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccccCccee
Q 024756           27 SVISKAALT--KGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLS  103 (263)
Q Consensus        27 ~~~~K~~~~--~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~~~~gl~~~~a~~a  103 (263)
                      ....|..++  .---|..++..++..+.+.++. ..++-++..+..++..+..++.+|++.+++..+-+.++++.+.+..
T Consensus        33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~  112 (316)
T KOG1441|consen   33 IILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFY  112 (316)
T ss_pred             EEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHH
Confidence            344577766  3345888888888888887776 3332221111123345667778898888899999999999999999


Q ss_pred             eeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCCCCcccccccchhHH
Q 024756          104 SAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLI  183 (263)
Q Consensus       104 sii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  183 (263)
                      -.+=.++|+++.++++++.+|+.+..      .+..++....|+.+...  ++                    .+.+ ..
T Consensus       113 q~iKa~~P~~tvl~~~~~~~~~~s~~------~~lsL~piv~GV~ias~--~e--------------------~~fn-~~  163 (316)
T KOG1441|consen  113 QTIKALMPPFTVLLSVLLLGKTYSSM------TYLSLLPIVFGVAIASV--TE--------------------LSFN-LF  163 (316)
T ss_pred             HHHHhhcchhHHHHHHHHhCCCCcce------EEEEEEEeeeeEEEeee--cc--------------------cccc-HH
Confidence            99999999999999999999999999      99999999999988753  11                    1223 47


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh----hCCchHHHHHHHHHHHHHHHH-HHHHHhcCC
Q 024756          184 GGLLLVLVCISSAIWNVAQAATIR----GYPEEMTVVFFYTFFITIQAL-CFSVIVEND  237 (263)
Q Consensus       184 G~~~~l~aa~~~a~~~v~~k~~~~----~~~~~~~~~~~~~~~~~i~~l-~~~~~~~~~  237 (263)
                      |...++.+.+..+...++.|+..+    +. +++....++.-++.+.++ |.....+++
T Consensus       164 G~i~a~~s~~~~al~~I~~~~ll~~~~~~~-~~~~ll~y~ap~s~~~Ll~P~~~~~~~~  221 (316)
T KOG1441|consen  164 GFISAMISNLAFALRNILSKKLLTSKGESL-NSMNLLYYTAPISLIFLLIPFLDYVEGN  221 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccccc-CchHHHHHhhhHHHHHHhcchHhhhccc
Confidence            999999999999999999999874    23 689999999999999888 766555543

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=98.23  E-value=7.9e-05  Score=65.79  Aligned_cols=201  Identities=16%  Similarity=0.165  Sum_probs=126.0

Q ss_pred             hhhHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcC---CCCCCHHHHH-HHHH
Q 024756            7 LQNTIPFVAMVTVECTD--VGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNK---GASLTWSLIW-RFFL   79 (263)
Q Consensus         7 ~~~~~~~~~~l~a~~~w--g~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~---~~~~~~~~~~-~~~l   79 (263)
                      +.|.-..+.+++..-+.  |..+...+...+ --=|+.++.+.++.=.++-.. -...+++.   +-..+|++-. +...
T Consensus        11 ~~~rV~~L~lVl~yY~~Si~Ltf~~~~~~~~-f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aP   89 (349)
T KOG1443|consen   11 LMNRVLTLALVLLYYFLSIGLTFYFKWLTKN-FHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAP   89 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcC-cCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhh
Confidence            33333444444444333  334444444322 112556666655543333222 11112111   1235666544 4666


Q ss_pred             HHHHHHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCcccc
Q 024756           80 LGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLL  159 (263)
Q Consensus        80 ~g~l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~  159 (263)
                      .|+..+..-++-+++++|++.+.=+..=++.++|+.+.+.++.-||.++.      -..-+.+..+|+++.+. ++.+. 
T Consensus        90 talata~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~------L~l~v~lI~~Glflft~-KsTqf-  161 (349)
T KOG1443|consen   90 TALATALDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWA------LVLIVLLIAVGLFLFTY-KSTQF-  161 (349)
T ss_pred             hhhhhhcccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHH------HHHHHHHHhhheeEEEe-cccce-
Confidence            78888888999999999999998888889999999999998888999999      77777777788877764 33221 


Q ss_pred             ccCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC----chHHHHHHHHHHHHHHHHHHHHHhc
Q 024756          160 MASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYP----EEMTVVFFYTFFITIQALCFSVIVE  235 (263)
Q Consensus       160 ~~~s~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~  235 (263)
                                          + ..|..+++.|+++-++==...++..++.|    +|++......-.-.+.+++..+.+|
T Consensus       162 --------------------~-i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fE  220 (349)
T KOG1443|consen  162 --------------------N-IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFE  220 (349)
T ss_pred             --------------------e-ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHc
Confidence                                1 24777777766665554444555444442    5777777766667777777777777


Q ss_pred             CC
Q 024756          236 ND  237 (263)
Q Consensus       236 ~~  237 (263)
                      +.
T Consensus       221 G~  222 (349)
T KOG1443|consen  221 GL  222 (349)
T ss_pred             cc
Confidence            64

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.12  E-value=2.4e-05  Score=61.46  Aligned_cols=116  Identities=16%  Similarity=0.252  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH-HHHHHH
Q 024756           12 PFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIG-SSGQII   90 (263)
Q Consensus        12 ~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~-~~~~~~   90 (263)
                      ++++++...++-+..-++.|...+ +.+........  .    . .... ..      +   ....+..|+.. .+++.+
T Consensus         3 ~~~~i~~sv~l~~~gQl~~K~g~~-~~g~~~~~~~~--~----~-~~~~-~~------~---p~~~i~lgl~~~~la~~~   64 (129)
T PRK02971          3 GYLWGLASVLLASVAQLSLKWGMS-RLPLLSHAWDF--I----A-ALLA-FG------L---ALRAVLLGLAGYALSMLC   64 (129)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHh-hCCCccchhHH--H----H-HHHH-Hh------c---cHHHHHHHHHHHHHHHHH
Confidence            567777788888888889998876 44443322211  0    0 0100 00      0   01245667787 999999


Q ss_pred             HHhhccccCcceeeeccchhHHHHHHHHHH--HhhccccccccCccccchhHHHHHHHHHHHH
Q 024756           91 YFTGLKFSSPTLSSAMANLIPIYTFLLAVI--FRIEKLDLRRSSSQAKTLGATVAVTGAFMIT  151 (263)
Q Consensus        91 ~~~gl~~~~a~~asii~~~~Pv~~~ila~l--~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~  151 (263)
                      |..++++.|.+.|.-+.+..+.++.+.++.  ++||+++.+      |++|+++.++|++++.
T Consensus        65 w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~------~~iGi~lIi~GV~lv~  121 (129)
T PRK02971         65 WLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLK------KTLGVACIMLGVWLIN  121 (129)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHhc
Confidence            999999999999998888888888888875  799999999      9999999999999976

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=98.03  E-value=9.5e-05  Score=67.12  Aligned_cols=138  Identities=12%  Similarity=0.014  Sum_probs=109.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCC--CCCHHHHHHHHHHHHHH
Q 024756            8 QNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGA--SLTWSLIWRFFLLGLIG   84 (263)
Q Consensus         8 ~~~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~--~~~~~~~~~~~l~g~l~   84 (263)
                      ...+|-+.++.++++||...+.-|.... +.|+.++...=-+++.++..+ ....+|+...  +++.+....++.-++..
T Consensus       165 ~~i~GDll~l~~a~lya~~nV~~E~~v~-~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~l  243 (334)
T PF06027_consen  165 NPILGDLLALLGAILYAVSNVLEEKLVK-KAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCL  243 (334)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhcc-cCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHH
Confidence            3467889999999999999999999888 689999988888889988888 6655554432  23444444333333333


Q ss_pred             HHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           85 SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        85 ~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      +..+.+.-..+++++|+...+=.-+..++..+.+.+++|+++++.      .++|.++.++|.++...
T Consensus       244 f~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~l------y~~af~lIiiG~vvy~~  305 (334)
T PF06027_consen  244 FLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWL------YILAFALIIIGFVVYNL  305 (334)
T ss_pred             HHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHH------HHHHHHHHHHHhheEEc
Confidence            666677778899999998887777889999999999999999999      99999999999988764

Some of the sequences in this family are annotated as putative membrane proteins.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=98.01  E-value=4.6e-05  Score=65.62  Aligned_cols=136  Identities=15%  Similarity=0.095  Sum_probs=109.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHH
Q 024756            6 WLQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIG   84 (263)
Q Consensus         6 ~~~~~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~   84 (263)
                      |-.+.-+..+.+.+..||...-+..|.+-+ ..+-.+-+..-+.+++++.+| -.- .- ...-.+.+.+..-..+|++.
T Consensus       143 ~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~-~~~g~~g~a~gm~vAaviv~Pig~~-~a-g~~l~~p~ll~laLgvavlS  219 (292)
T COG5006         143 WSLDPVGVALALGAGACWALYIVLGQRAGR-AEHGTAGVAVGMLVAALIVLPIGAA-QA-GPALFSPSLLPLALGVAVLS  219 (292)
T ss_pred             CcCCHHHHHHHHHHhHHHHHHHHHcchhcc-cCCCchHHHHHHHHHHHHHhhhhhh-hc-chhhcChHHHHHHHHHHHHh
Confidence            334556788899999999999999998764 456677788888999999999 432 11 11123444455556679999


Q ss_pred             -HHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHH
Q 024756           85 -SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMI  150 (263)
Q Consensus        85 -~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll  150 (263)
                       .+.|.+-..++++.|...-+++.+++|.+.++.++++++|.++..      ||.++...+.+..=.
T Consensus       220 SalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~------qwlaI~~ViaAsaG~  280 (292)
T COG5006         220 SALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLI------QWLAIAAVIAASAGS  280 (292)
T ss_pred             cccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHHhcc
Confidence             999999999999999999999999999999999999999999999      999999888877543

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.00045  Score=61.44  Aligned_cols=182  Identities=15%  Similarity=0.145  Sum_probs=134.4

Q ss_pred             HHHHHHHHHhcCCChHHHH--HHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccccCccee
Q 024756           26 LSVISKAALTKGMNKFVSV--VYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLS  103 (263)
Q Consensus        26 ~~~~~K~~~~~~~~p~~~~--~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~~~~gl~~~~a~~a  103 (263)
                      +.+.-|.++.+.=-|..+.  .++.....+.+......+--+.++++++..+...-..++.......--.++||.+...-
T Consensus        27 m~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~  106 (314)
T KOG1444|consen   27 MTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMF  106 (314)
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHH
Confidence            3455577776322233333  47887777766553222222235678887777777777776677777889999999999


Q ss_pred             eeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCCCCcccccccchhHH
Q 024756          104 SAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLI  183 (263)
Q Consensus       104 sii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~  183 (263)
                      +++=..+|+++++....+++.|++.+      .+.++....+|.......   +                 .+.  + ..
T Consensus       107 tv~kn~tii~~ai~E~lf~~~~~~~~------v~~Sv~~m~~~s~~~~~~---d-----------------~sf--~-~~  157 (314)
T KOG1444|consen  107 TVFKNLTIILTAIGEVLFFGKRPSNK------VWASVFAMIIGSVAAAFT---D-----------------LSF--N-LR  157 (314)
T ss_pred             HHHhhchHHHHHHhHHhhcCcCchhh------HHHHHHHHHHHHHhhccc---c-----------------cee--c-ch
Confidence            99999999999999999999888888      999999999998876541   1                 011  1 23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHHhcC
Q 024756          184 GGLLLVLVCISSAIWNVAQAATIRGYP-EEMTVVFFYTFFITIQALCFSVIVEN  236 (263)
Q Consensus       184 G~~~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~  236 (263)
                      |..+++...++-+.+.+..|+..+... +.+..+++..+.....+.....+.++
T Consensus       158 gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge  211 (314)
T KOG1444|consen  158 GYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGE  211 (314)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcc
Confidence            899999999999999999998766442 46677888888888888888877665

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=97.93  E-value=0.00018  Score=62.84  Aligned_cols=187  Identities=17%  Similarity=0.212  Sum_probs=126.8

Q ss_pred             HHHHHHHHHHHHh---cCC----ChHHHHHHHHHHHHHHHHH-HHHHhhcCCC---------------CCCHHHHHHHHH
Q 024756           23 DVGLSVISKAALT---KGM----NKFVSVVYYNALGTLILLP-YFLFRRNKGA---------------SLTWSLIWRFFL   79 (263)
Q Consensus        23 wg~~~~~~K~~~~---~~~----~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~---------------~~~~~~~~~~~l   79 (263)
                      =+.+.+.+|.+-+   .+.    +|+.....-|+-=.+++.. ..+++|...+               +.+...   ...
T Consensus        15 Gs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~l---fl~   91 (372)
T KOG3912|consen   15 GSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVL---FLP   91 (372)
T ss_pred             ccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcce---ecC
Confidence            3567777887532   122    3666666666666677777 5555442221               112111   111


Q ss_pred             HHHHHHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCcccc
Q 024756           80 LGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLL  159 (263)
Q Consensus        80 ~g~l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~  159 (263)
                      =+++...+..+.|.|+.+|+++.---+-...-+|+.+++.-+++.+++.+      ||+|+.....|++++...   +..
T Consensus        92 Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~------qWl~i~fv~lGlviVg~~---d~~  162 (372)
T KOG3912|consen   92 PALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGR------QWLGILFVSLGLVIVGSL---DVH  162 (372)
T ss_pred             hHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchh------hHHHHHHHHhhhheeeee---ecc
Confidence            24444667788899999998886655666667889999999999999999      999999999999887531   111


Q ss_pred             ccCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHH
Q 024756          160 MASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYP-EEMTVVFFYTFFITIQALCFS  231 (263)
Q Consensus       160 ~~~s~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~l~~~  231 (263)
                      .   ..|+.       ..-++...|+++++.+=+.-|+..+.-+|..++.. +|.....|+.++|.+.+...+
T Consensus       163 ~---~~~p~-------~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~  225 (372)
T KOG3912|consen  163 L---VTDPY-------TDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLA  225 (372)
T ss_pred             c---ccCCc-------cccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHH
Confidence            1   01110       01134568999999999999999999998877653 699999999999965554443

>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]

Probab=97.90  E-value=2.4e-05  Score=65.06  Aligned_cols=101  Identities=23%  Similarity=0.250  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCcccccc
Q 024756           82 LIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMA  161 (263)
Q Consensus        82 ~l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~  161 (263)
                      ++-..+++.|..++++.+++.++.+......|+.+++++.+++|+...      ++++.++++.|++++...++.     
T Consensus        61 i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~------kIlaailAI~GiVmiay~DN~-----  129 (290)
T KOG4314|consen   61 IFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGF------KILAAILAIGGIVMIAYADNE-----  129 (290)
T ss_pred             EEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhh------hHHHHHHHhCcEEEEEeccch-----
Confidence            344678899999999999999999999999999999999999999999      999999999999988642221     


Q ss_pred             CCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 024756          162 SSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGY  209 (263)
Q Consensus       162 ~s~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~  209 (263)
                                      ..+...|..++..+++.-|+|-++-|+...+.
T Consensus       130 ----------------~a~e~iGi~~AV~SA~~aAlYKV~FK~~iGnA  161 (290)
T KOG4314|consen  130 ----------------HADEIIGIACAVGSAFMAALYKVLFKMFIGNA  161 (290)
T ss_pred             ----------------hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence                            22446899999999999999999999987655

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=97.77  E-value=0.00048  Score=61.68  Aligned_cols=135  Identities=21%  Similarity=0.254  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHH-HHH--HhhcCC----CCCCHHHHHHHHHHHHH
Q 024756           12 PFVAMVTVECTDVGLSVISKAALT-KGMNKFVSVVYYNALGTLILLP-YFL--FRRNKG----ASLTWSLIWRFFLLGLI   83 (263)
Q Consensus        12 ~~~~~l~a~~~wg~~~~~~K~~~~-~~~~p~~~~~~R~~~a~l~ll~-~~~--~~~~~~----~~~~~~~~~~~~l~g~l   83 (263)
                      |+.+++++.++-|...+.-+...+ .+.++.+..++-..++.+..++ ...  ...-..    .......+..+.+..+.
T Consensus       155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~  234 (303)
T PF08449_consen  155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT  234 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence            889999999999999999999884 5689999999999999998887 554  111000    00112244455556666


Q ss_pred             HHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           84 GSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        84 ~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      +...+.+.+.-.++.++...+++..+--.++.+++..+++|+++..      +|+|+++.+.|..+=..
T Consensus       235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~------~~~G~~lv~~g~~~~~~  297 (303)
T PF08449_consen  235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPL------QWIGIVLVFAGIFLYSY  297 (303)
T ss_pred             HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChH------HHHHHHHhHHHHHHHHH
Confidence            6777777788899999999999999999999999999999999999      99999999999987553

; GO: 0055085 transmembrane transport

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.71  E-value=0.0046  Score=54.37  Aligned_cols=142  Identities=20%  Similarity=0.147  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccccCcceeeecc-chhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHH
Q 024756           71 WSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMA-NLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFM  149 (263)
Q Consensus        71 ~~~~~~~~l~g~l~~~~~~~~~~gl~~~~a~~asii~-~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~l  149 (263)
                      .+.+..-++.|++-..++..++.+.++.+.+.+.=+. ...=+.+.+.++++|+|.-+.+.+  ..-..++++.++|+.+
T Consensus        42 ~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~--~~G~~Al~liiiGv~l  119 (269)
T PF06800_consen   42 GTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQK--IIGFLALVLIIIGVIL  119 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchH--HHHHHHHHHHHHHHHH
Confidence            3677777788888899999999999999999998665 455567888999999999887721  0113366777778877


Q ss_pred             HHhhcCccccccCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHH
Q 024756          150 ITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALC  229 (263)
Q Consensus       150 l~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~l~  229 (263)
                      ... +++.        +      ++.+...+...|....+++++.|..|.++.|.  .+. ++.....=|.+--.+...+
T Consensus       120 ts~-~~~~--------~------~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~--~~~-~~~~~~lPqaiGm~i~a~i  181 (269)
T PF06800_consen  120 TSY-QDKK--------S------DKSSSKSNMKKGILALLISTIGYWIYSVIPKA--FHV-SGWSAFLPQAIGMLIGAFI  181 (269)
T ss_pred             hcc-cccc--------c------cccccccchhhHHHHHHHHHHHHHHHHHHHHh--cCC-ChhHhHHHHHHHHHHHHHH
Confidence            654 2211        0      01111335567999999999999999999876  344 4666555444433333333


Q ss_pred             HHH
Q 024756          230 FSV  232 (263)
Q Consensus       230 ~~~  232 (263)
                      +..
T Consensus       182 ~~~  184 (269)
T PF06800_consen  182 FNL  184 (269)
T ss_pred             Hhh
Confidence            333

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00688 rarD rarD protein

Probab=97.49  E-value=0.0013  Score=57.26  Aligned_cols=104  Identities=12%  Similarity=0.069  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCC-CC-CCHHHHHHHHHHHHHHHHHHHHHH
Q 024756           15 AMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKG-AS-LTWSLIWRFFLLGLIGSSGQIIYF   92 (263)
Q Consensus        15 ~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~-~~-~~~~~~~~~~l~g~l~~~~~~~~~   92 (263)
                      ..+.++++|+...+..|...+  .++.+...... ....+..+......... .. ...++|..++..|+....++.+++
T Consensus       150 ~~l~aa~~~a~~~i~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~~  226 (256)
T TIGR00688       150 EALVLAFSFTAYGLIRKALKN--TDLAGFCLETL-SLMPVAIYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAFV  226 (256)
T ss_pred             HHHHHHHHHHHHHHHHhhcCC--CCcchHHHHHH-HHHHHHHHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999998643  23333222221 11111111111111111 11 123578888888887788999999


Q ss_pred             hhccccCcceeeeccchhHHHHHHHHHHH
Q 024756           93 TGLKFSSPTLSSAMANLIPIYTFLLAVIF  121 (263)
Q Consensus        93 ~gl~~~~a~~asii~~~~Pv~~~ila~l~  121 (263)
                      +|+++.+++.++.+.+++|+++.+++.+.
T Consensus       227 ~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       227 IAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             HHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999998753

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=97.43  E-value=0.0014  Score=57.54  Aligned_cols=133  Identities=20%  Similarity=0.183  Sum_probs=91.7

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHH
Q 024756            7 LQNTIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIGS   85 (263)
Q Consensus         7 ~~~~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~~   85 (263)
                      ....|++..++++.+.|.....+.|..   +++|.....=+ .++.++-.. .....+  .+..+++.+ +-++.|++-.
T Consensus       134 ~~~~kgi~~Ll~stigy~~Y~~~~~~~---~~~~~~~~lPq-aiGm~i~a~i~~~~~~--~~~~~k~~~-~nil~G~~w~  206 (269)
T PF06800_consen  134 SNMKKGILALLISTIGYWIYSVIPKAF---HVSGWSAFLPQ-AIGMLIGAFIFNLFSK--KPFFEKKSW-KNILTGLIWG  206 (269)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHhc---CCChhHhHHHH-HHHHHHHHHHHhhccc--ccccccchH-HhhHHHHHHH
Confidence            345678999999999999988888863   57887776533 444443333 222111  111223333 3456788888


Q ss_pred             HHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHH
Q 024756           86 SGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAF  148 (263)
Q Consensus        86 ~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~  148 (263)
                      .++.+++.+.+..+.+.+=.+..+..++..+.+.+++||+=++|++  ....+|+++.++|.+
T Consensus       207 ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~--~~~~~G~~Liv~G~i  267 (269)
T PF06800_consen  207 IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEM--IYTLIGLILIVIGAI  267 (269)
T ss_pred             HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhH--HHHHHHHHHHHHhhh
Confidence            8999999999999999999999999999999999999999887721  113345555555543

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.40  E-value=0.0092  Score=54.44  Aligned_cols=175  Identities=17%  Similarity=0.155  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH---HHHHhhc---CCCCCCHHHHHHHHHHHHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP---YFLFRRN---KGASLTWSLIWRFFLLGLI   83 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~---~~~~~~~---~~~~~~~~~~~~~~l~g~l   83 (263)
                      ..++++.+++.++||+.++-.|. .. .-+ ++.-+.-..+-.-++.|   ..+..+.   .....+.+.+...++.|++
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~-~k-~w~-wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~   82 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKK-VK-KWS-WETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL   82 (345)
T ss_pred             HHHHHHHHHHHHHhhcccccccc-cC-CCc-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH
Confidence            45889999999999999999998 33 223 22222211110111111   0110110   0112456677777778888


Q ss_pred             HHHHHHHHHhhccccCcceeeec-cchhHHHHHHHHHHHhhccc---cccccCccccchhHHHHHHHHHHHHhhcCcccc
Q 024756           84 GSSGQIIYFTGLKFSSPTLSSAM-ANLIPIYTFLLAVIFRIEKL---DLRRSSSQAKTLGATVAVTGAFMITLYRGPLLL  159 (263)
Q Consensus        84 ~~~~~~~~~~gl~~~~a~~asii-~~~~Pv~~~ila~l~~~e~~---~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~  159 (263)
                      -..++..++.++++.+.+.+.-+ ..+.-+...++..++++|-.   +.+  ......+|+++.++|+++.... +...+
T Consensus        83 W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~--~g~~~~~gv~liliGi~l~s~A-g~~k~  159 (345)
T PRK13499         83 WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATN--GGRMTLLGVLVALIGVAIVGRA-GQLKE  159 (345)
T ss_pred             HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccc--hHHHHHHHHHHHHHHHHHHHHh-hhhcc
Confidence            89999999999999999998866 56778888889888888755   322  1122678888999999887641 11000


Q ss_pred             ccCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHH
Q 024756          160 MASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWN  199 (263)
Q Consensus       160 ~~~s~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~  199 (263)
                          +++.+     +...+.+...|...++++.+.++.|.
T Consensus       160 ----~~~~~-----~~~~~~~~~KGi~ialisgi~~~~f~  190 (345)
T PRK13499        160 ----RKMGI-----KKAEEFNLKKGLILAVMSGIFSACFS  190 (345)
T ss_pred             ----ccccc-----ccccccchHhHHHHHHHHHHHHHHHH
Confidence                00000     00123455689999999999999999

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=97.13  E-value=0.0013  Score=50.23  Aligned_cols=108  Identities=18%  Similarity=0.182  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH-HHHHHHHHhhc
Q 024756           17 VTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIG-SSGQIIYFTGL   95 (263)
Q Consensus        17 l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~-~~~~~~~~~gl   95 (263)
                      +++.++||.+.++.|.+.. +.++..-.. |..-....    .+           +++.+  ....+. -.+...|+..+
T Consensus         2 l~Vg~~WG~Tnpfik~g~~-~~~~~~~~~-~~~~~~~~----Ll-----------~n~~y--~ipf~lNq~GSv~f~~~L   62 (113)
T PF10639_consen    2 LLVGILWGCTNPFIKRGSS-GLEKVKASL-QLLQEIKF----LL-----------LNPKY--IIPFLLNQSGSVLFFLLL   62 (113)
T ss_pred             eeehHHhcCchHHHHHHHh-hcCCccchH-HHHHHHHH----HH-----------HhHHH--HHHHHHHHHHHHHHHHHH
Confidence            4678999999999999886 555544431 32211111    11           11122  223343 66778899999


Q ss_pred             cccCcceeeecc-chhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHH
Q 024756           96 KFSSPTLSSAMA-NLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFM  149 (263)
Q Consensus        96 ~~~~a~~asii~-~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~l  149 (263)
                      .+.+.+.+.-+. ++.=++|++.++++.+|..+++      +++|..+.+.|+.+
T Consensus        63 ~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~------~~~G~~Li~~Gv~L  111 (113)
T PF10639_consen   63 GSADLSLAVPIANSLAFVFTALTGWLLGEEVISRR------TWLGMALILAGVAL  111 (113)
T ss_pred             hcCCceeeehHHhHHHHHHHHHHHHHhcCcccchh------HHHHHHHHHcCeee
Confidence            999999999885 6677788888887777777777      89999999999865

Many members are annotated as potential transmembrane proteins.

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.10  E-value=0.02  Score=52.25  Aligned_cols=143  Identities=15%  Similarity=0.100  Sum_probs=95.0

Q ss_pred             hHHHHHHHHHHHHHHHHHH-------HHHHHHHhcCCChHHHHHHHHH---HHHHHHH-H-HHHH-hh-cCC-----CCC
Q 024756            9 NTIPFVAMVTVECTDVGLS-------VISKAALTKGMNKFVSVVYYNA---LGTLILL-P-YFLF-RR-NKG-----ASL   69 (263)
Q Consensus         9 ~~~~~~~~l~a~~~wg~~~-------~~~K~~~~~~~~p~~~~~~R~~---~a~l~ll-~-~~~~-~~-~~~-----~~~   69 (263)
                      ..|++..++++.+.++...       +..+.+.+.+.++.....-.++   ++..+.- . +.++ +| ++.     .+-
T Consensus       172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~~  251 (345)
T PRK13499        172 LKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFSL  251 (345)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhccc
Confidence            3689999999999988877       5565544446777665555554   4444433 2 3322 12 111     111


Q ss_pred             C----HHHHHHHHHHHHHHHHHHHHHHhhccccCcceeee---cc-chhHHHHHHHHHHHhhccccccccCccccchhHH
Q 024756           70 T----WSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSA---MA-NLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGAT  141 (263)
Q Consensus        70 ~----~~~~~~~~l~g~l~~~~~~~~~~gl~~~~a~~asi---i~-~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~  141 (263)
                      +    .+.....++.|++-+..+.+|..|.+..+...+.+   +. .+.-++..+.+. ++||+=+..||..+..++|++
T Consensus       252 ~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~v  330 (345)
T PRK13499        252 AKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCV  330 (345)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHH
Confidence            2    23334446667777888999999999887766665   55 444466666666 699999977777788899999


Q ss_pred             HHHHHHHHHHh
Q 024756          142 VAVTGAFMITL  152 (263)
Q Consensus       142 l~~~G~~ll~~  152 (263)
                      +.+.|.+++..
T Consensus       331 liI~g~~lig~  341 (345)
T PRK13499        331 VIILAANIVGL  341 (345)
T ss_pred             HHHHHHHHHhh
Confidence            99999988864

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=96.97  E-value=0.016  Score=51.17  Aligned_cols=126  Identities=13%  Similarity=0.112  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcC--CCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 024756           18 TVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNK--GASLTWSLIWRFFLLGLIGSSGQIIYFTG   94 (263)
Q Consensus        18 ~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~--~~~~~~~~~~~~~l~g~l~~~~~~~~~~g   94 (263)
                      .-++.||.....=|..   .+|+.+-...-...-.+.-+. ........  ....+.+.+..+...|+.......+|..|
T Consensus       155 ~la~sf~~Ygl~RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~~a  231 (293)
T COG2962         155 ALALSFGLYGLLRKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFAAA  231 (293)
T ss_pred             HHHHHHHHHHHHHHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHHHH
Confidence            3345566666555543   477777666666555554444 22222111  11134567888889999999999999999


Q ss_pred             ccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           95 LKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        95 l~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      -+++|-+.-+.++|.+|.+..++++++++|+++..      |.++-+..-.|+++...
T Consensus       232 a~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~------~~~~F~~IW~aL~l~~~  283 (293)
T COG2962         232 AKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSD------QLVTFAFIWLALALFSI  283 (293)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999      99999999999888754

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.97  E-value=0.0065  Score=46.22  Aligned_cols=60  Identities=15%  Similarity=0.108  Sum_probs=52.4

Q ss_pred             HHHHHHHHhhccccCcceeeec-cchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHH
Q 024756           85 SSGQIIYFTGLKFSSPTLSSAM-ANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMI  150 (263)
Q Consensus        85 ~~~~~~~~~gl~~~~a~~asii-~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll  150 (263)
                      ..++.+...++|+.|.+.|=.+ ...--+.+.+.++++++|++++.      |++|+.+.+.|++.+
T Consensus        46 ~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~------~~~gi~lIi~GVi~l  106 (109)
T PRK10650         46 LAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRK------GWIGLVLLLAGMVMI  106 (109)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHh
Confidence            7788889999999999877544 45667788899999999999999      999999999999886

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.90  E-value=0.0078  Score=47.77  Aligned_cols=128  Identities=17%  Similarity=0.213  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024756           14 VAMVTVECTDVGLSVISKAALTKGM-NKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIY   91 (263)
Q Consensus        14 ~~~l~a~~~wg~~~~~~K~~~~~~~-~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~~   91 (263)
                      +..+++..+-+....+--..-+ .. +|...++..+..+.+++.. ....++......+ +.-.+..+-|+++.....+.
T Consensus         4 lla~~aG~~i~~q~~~N~~L~~-~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~-~~p~w~~lGG~lG~~~V~~~   81 (138)
T PF04657_consen    4 LLALLAGALIALQAAFNGQLGK-ALGSPLVASFISFGVGFILLLIILLITGRPSLASLS-SVPWWAYLGGLLGVFFVLSN   81 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhc-cCChHHhccHHHHHHHHHHH
Confidence            3445555555555444444333 34 5999999999999999888 6554442221111 11223445788888888899


Q ss_pred             HhhccccCcceeeeccch-hHHHHHHHHHH----HhhccccccccCccccchhHHHHHHHHHH
Q 024756           92 FTGLKFSSPTLSSAMANL-IPIYTFLLAVI----FRIEKLDLRRSSSQAKTLGATVAVTGAFM  149 (263)
Q Consensus        92 ~~gl~~~~a~~asii~~~-~Pv~~~ila~l----~~~e~~~~~~~~~~~~~~g~~l~~~G~~l  149 (263)
                      ...+++.+++.+.++.-+ .=+...+++++    .-+++++.+      |++|+++.++|+.+
T Consensus        82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~------r~lG~~l~i~Gv~L  138 (138)
T PF04657_consen   82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLR------RILGLALMIAGVIL  138 (138)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHH------HHHHHHHHHHHHhC
Confidence            999999999988877543 55566677764    245777778      99999999999864

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.87  E-value=0.0026  Score=48.48  Aligned_cols=66  Identities=20%  Similarity=0.276  Sum_probs=55.6

Q ss_pred             HHHH-HHHHHHHHhhccccCcceeeec-cchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           81 GLIG-SSGQIIYFTGLKFSSPTLSSAM-ANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        81 g~l~-~~~~~~~~~gl~~~~a~~asii-~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      .+.+ .+++.++..++++.|.+.|=.+ ...--+.+.+.++++++|++++.      +++|+.+.++|++++..
T Consensus        36 ~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~------~~~gi~lIi~GVi~l~l  103 (110)
T PRK09541         36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLVINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            3444 7788888999999998877655 45667788999999999999999      99999999999999854

>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]

Probab=96.86  E-value=0.00039  Score=60.47  Aligned_cols=133  Identities=19%  Similarity=0.235  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024756           12 PFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIGSSGQII   90 (263)
Q Consensus        12 ~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~   90 (263)
                      +-...+.+.+.-+...++.|+.-. ..+......+--+++.+.-++ +..-..-.. +..+|+|....-+|+++++++++
T Consensus       192 gt~aai~s~lf~asvyIilR~iGk-~~h~~msvsyf~~i~lV~s~I~~~~ig~~~l-P~cgkdr~l~~~lGvfgfigQIl  269 (346)
T KOG4510|consen  192 GTVAAISSVLFGASVYIILRYIGK-NAHAIMSVSYFSLITLVVSLIGCASIGAVQL-PHCGKDRWLFVNLGVFGFIGQIL  269 (346)
T ss_pred             chHHHHHhHhhhhhHHHHHHHhhc-cccEEEEehHHHHHHHHHHHHHHhhccceec-CccccceEEEEEehhhhhHHHHH
Confidence            345566666677777788887533 677776666666666666555 432222122 34667888888899999999999


Q ss_pred             HHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           91 YFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        91 ~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      ...|+|.--++..+++.++--+++.+...++++|-+++.      .|.|.++.+...+....
T Consensus       270 lTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~w------s~~Ga~~vvsS~v~~a~  325 (346)
T KOG4510|consen  270 LTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIW------SWVGAVMVVSSTVWVAL  325 (346)
T ss_pred             HHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHH------HhhceeeeehhHHHHHH
Confidence            999999999999999999999999999999999999999      99999998888877764

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=96.82  E-value=0.0025  Score=49.39  Aligned_cols=66  Identities=24%  Similarity=0.234  Sum_probs=56.6

Q ss_pred             HHHH-HHHHHHHHhhccccCcceeeec-cchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           81 GLIG-SSGQIIYFTGLKFSSPTLSSAM-ANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        81 g~l~-~~~~~~~~~gl~~~~a~~asii-~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      .+.+ ..++.++..++++.|.+.|=.+ ...--+.+.+.++++++|+++..      +++|+.+.++|++.+-.
T Consensus        36 ~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~------~~~gi~lIi~GVi~l~l  103 (120)
T PRK10452         36 MLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLM------KIAGLTTLVAGIVLIKS  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHhhc
Confidence            4444 7888999999999999887655 35677888999999999999999      99999999999988854

>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]

Probab=96.80  E-value=0.0042  Score=55.96  Aligned_cols=137  Identities=17%  Similarity=0.205  Sum_probs=105.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCChHHHHHHHHHHHHHHHH-H-HHHHhhcCC-----CCCCHHHHHHH
Q 024756            8 QNTIPFVAMVTVECTDVGLSVISKAAL---TKGMNKFVSVVYYNALGTLILL-P-YFLFRRNKG-----ASLTWSLIWRF   77 (263)
Q Consensus         8 ~~~~~~~~~l~a~~~wg~~~~~~K~~~---~~~~~p~~~~~~R~~~a~l~ll-~-~~~~~~~~~-----~~~~~~~~~~~   77 (263)
                      -|+.|.+....+.+..+.-.++.|..+   +...|+..+..+.--++...++ | ....+....     ...+...+.. 
T Consensus       160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~-  238 (316)
T KOG1441|consen  160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLIL-  238 (316)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHH-
Confidence            367899999999999999999999988   3358999999999999999999 7 544332111     1233333332 


Q ss_pred             HHHHHHHHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHH
Q 024756           78 FLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMIT  151 (263)
Q Consensus        78 ~l~g~l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~  151 (263)
                      .+..++..+.+..-|..+++++|.+=++....==+++...++++++|+++..      +..|..+++.|+.+=.
T Consensus       239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~------n~~G~~iai~Gv~~Y~  306 (316)
T KOG1441|consen  239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFL------NALGYAIAILGVFLYS  306 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchh------hHHHHHHHHHHHHHHH
Confidence            2334555778888999999999988887776655667778888999999999      9999999999998754

>KOG2765 consensus Predicted membrane protein [Function unknown]

Probab=96.67  E-value=0.014  Score=53.20  Aligned_cols=136  Identities=11%  Similarity=0.157  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHH-HHHHhhcCCC---CCCHHHHHHHHHHHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTK---GMNKFVSVVYYNALGTLILLP-YFLFRRNKGA---SLTWSLIWRFFLLGL   82 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~---~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~---~~~~~~~~~~~l~g~   82 (263)
                      ..|.++.+++++.||...++.|.-.++   ..|...+-.+--++..++++| .++..+-..+   -++..+...++..++
T Consensus       246 llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l  325 (416)
T KOG2765|consen  246 LLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL  325 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence            568899999999999999999987753   356777777778888888887 5543221111   123344555667788


Q ss_pred             HH-HHHHHHHHhhccccCcceeeeccc-hhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           83 IG-SSGQIIYFTGLKFSSPTLSSAMAN-LIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        83 l~-~~~~~~~~~gl~~~~a~~asii~~-~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      ++ ..+-++|.+|+-.+++..+++=+. +.|+ .++...++.+.++++.      .++|.+..++|.+++..
T Consensus       326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPL-A~~aD~l~k~~~~S~~------~iiGsi~Ifv~Fv~vn~  390 (416)
T KOG2765|consen  326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPL-AMFADVLIKGKHPSAL------YIIGSIPIFVGFVIVNI  390 (416)
T ss_pred             HHHHHHHHHHHHHHHhccchhheeeeeEeeeH-HHHHHHHHcCCCCCHH------HHHHHHHHHHHHhheec
Confidence            88 999999999999999988887655 4554 5577888888888988      99999999999988864

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.64  E-value=0.0031  Score=47.49  Aligned_cols=62  Identities=23%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             HHHHHHHHhhccccCcceeeec-cchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           85 SSGQIIYFTGLKFSSPTLSSAM-ANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        85 ~~~~~~~~~gl~~~~a~~asii-~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      ..++.+.-.++|+.|.+.|=.+ ...--+.+.+.++++++|+++..      +++|+.+.++|++.+-.
T Consensus        41 ~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~------~~~gl~LiiaGvi~Lk~  103 (106)
T COG2076          41 GLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLI------KLLGLALILAGVIGLKL  103 (106)
T ss_pred             HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHH------HHHHHHHHHHHHHHhhh
Confidence            7788899999999999887544 56777889999999999999999      99999999999988753

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.59  E-value=0.0052  Score=46.47  Aligned_cols=64  Identities=9%  Similarity=0.067  Sum_probs=55.0

Q ss_pred             HHH-HHHHHHHHhhccccCcceeeec-cchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHH
Q 024756           82 LIG-SSGQIIYFTGLKFSSPTLSSAM-ANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMIT  151 (263)
Q Consensus        82 ~l~-~~~~~~~~~gl~~~~a~~asii-~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~  151 (263)
                      +.+ ..++.+...++|+.|.+.|=.+ ...--+.+.+.+.++++|++++.      |++|+.+.++|++.+.
T Consensus        36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~------~~~gi~lIi~GVv~l~  101 (105)
T PRK11431         36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPA------RLLSLALIVAGIIGLK  101 (105)
T ss_pred             HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHhhh
Confidence            444 7788899999999999877544 45777888999999999999999      9999999999999874

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.46  E-value=0.0041  Score=45.91  Aligned_cols=56  Identities=23%  Similarity=0.218  Sum_probs=33.8

Q ss_pred             HHHH-HHHHHHHHhhccccCccee-eeccchhHHHHHHHHHHHhhccccccccCccccchhHHH
Q 024756           81 GLIG-SSGQIIYFTGLKFSSPTLS-SAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATV  142 (263)
Q Consensus        81 g~l~-~~~~~~~~~gl~~~~a~~a-sii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l  142 (263)
                      .+.+ ..++.++..++|+.|.+.+ ++......+.+.+.+.++++|+++.+      |++|+.+
T Consensus        35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~------~~~gi~l   92 (93)
T PF00893_consen   35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLS------KWLGIGL   92 (93)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHhheee
Confidence            3434 7788999999999999998 45567888999999999999999999      9999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.17  E-value=0.068  Score=46.97  Aligned_cols=121  Identities=12%  Similarity=0.046  Sum_probs=89.5

Q ss_pred             HHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCC
Q 024756           90 IYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPD  169 (263)
Q Consensus        90 ~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~  169 (263)
                      +-..+++|.+.+.=-+=-.++-+|+.+++..++|||-+..      -..+..+.+.|.-+=+  |          +    
T Consensus       118 fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~------~~~~C~lIi~GF~lGv--d----------q----  175 (347)
T KOG1442|consen  118 FNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFF------ALGCCLLIILGFGLGV--D----------Q----  175 (347)
T ss_pred             ccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccc------cceeehhheehheecc--c----------c----
Confidence            3457788888877666677888999999999999999988      6666666555543321  0          0    


Q ss_pred             CCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHHhcC
Q 024756          170 HPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYP-EEMTVVFFYTFFITIQALCFSVIVEN  236 (263)
Q Consensus       170 ~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~  236 (263)
                          ++..+.-...|.++...|+++=|+..+..||...... -....+.+....+.+++++...+.++
T Consensus       176 ----E~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge  239 (347)
T KOG1442|consen  176 ----EGSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGE  239 (347)
T ss_pred             ----ccccCccchhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcch
Confidence                1122223347999999999999999999998654442 36778899999999999988877654

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=96.10  E-value=0.02  Score=49.20  Aligned_cols=73  Identities=21%  Similarity=0.325  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHH
Q 024756           73 LIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMIT  151 (263)
Q Consensus        73 ~~~~~~l~g~l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~  151 (263)
                      .+..+.+.++.+.+++.+-|.-+.+-+|-..++++.+--+|+++.++++++++++.+      ||+|.++.+.|...=.
T Consensus       240 ~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r------QwlgtvlVF~aL~~D~  312 (337)
T KOG1580|consen  240 VFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR------QWLGTVLVFSALTADV  312 (337)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH------HHHHHHHHHHHhhhHh
Confidence            455667778888889999999999999999999999999999999999999999999      9999999999986544

>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=95.74  E-value=0.079  Score=45.61  Aligned_cols=134  Identities=14%  Similarity=0.143  Sum_probs=97.8

Q ss_pred             HHHHHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccc
Q 024756           81 GLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLM  160 (263)
Q Consensus        81 g~l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~  160 (263)
                      +.-.-+++..-+.++|+.+=-...+=-+.-|+=+.++++++.|++-.++      +...+++.+.|+.+....++.... 
T Consensus        92 s~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~------kY~cVL~IV~GValFmYK~~Kv~g-  164 (337)
T KOG1580|consen   92 SASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWR------KYCCVLMIVVGVALFMYKENKVGG-  164 (337)
T ss_pred             HHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHH------HHHHHHHHHHHHHHhhccccccCC-
Confidence            3333667778899999998776666678889989999999999999999      999999999999886432232211 


Q ss_pred             cCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHHhcC
Q 024756          161 ASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYP-EEMTVVFFYTFFITIQALCFSVIVEN  236 (263)
Q Consensus       161 ~~s~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~  236 (263)
                                     ..+.....|+++.+++-..=++-...+.|+.+++. ...+++.+..+.+++.+..-.++.++
T Consensus       165 ---------------~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGE  226 (337)
T KOG1580|consen  165 ---------------AEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGE  226 (337)
T ss_pred             ---------------CcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhh
Confidence                           11223346999999998888888889988877652 35667777777777766554444433

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=95.54  E-value=0.043  Score=49.25  Aligned_cols=116  Identities=21%  Similarity=0.290  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH-HHHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIG-SSGQ   88 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~-~~~~   88 (263)
                      ..|....+.++++.+....+-|+...+ .+.   ..              .+++ ..++.-.++  ...+.|++. ..+.
T Consensus         6 ~iGv~lav~ss~~~~~g~~lqk~~~~r-~~~---~~--------------~~~~-~~~~~~l~~--~~W~~G~~~~~~g~   64 (300)
T PF05653_consen    6 YIGVLLAVVSSIFIAVGFNLQKKSHLR-LPR---GS--------------LRAG-SGGRSYLRR--PLWWIGLLLMVLGE   64 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc---cc--------------cccc-chhhHHHhh--HHHHHHHHHHhcch
Confidence            457777788888888888888876431 110   00              0000 000000111  123345555 6677


Q ss_pred             HHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           89 IIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        89 ~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      ..-+.++.+.|++..+=+..+.=++..+++..++|||++++      .+.|..+++.|..++..
T Consensus        65 ~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~------~~~G~~l~i~G~~liv~  122 (300)
T PF05653_consen   65 ILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRR------DIVGCALIILGSVLIVI  122 (300)
T ss_pred             HHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHh------HHhhHHHHHhhheeeEE
Confidence            78888999999988887777888899999999999999999      99999999999987764

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=95.23  E-value=0.0074  Score=52.05  Aligned_cols=171  Identities=15%  Similarity=0.137  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024756           12 PFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIY   91 (263)
Q Consensus        12 ~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~~   91 (263)
                      .++..++=++.||+...+....   +-+|.+-+..-.+-|.++-+..++..   .|..+.+.+..-++.|.+-..++...
T Consensus         3 ~~liaL~P~l~WGsip~v~~k~---GG~p~qQ~lGtT~GALifaiiv~~~~---~p~~T~~~~iv~~isG~~Ws~GQ~~Q   76 (288)
T COG4975           3 DLLIALLPALGWGSIPLVANKF---GGKPYQQTLGTTLGALIFAIIVFLFV---SPELTLTIFIVGFISGAFWSFGQANQ   76 (288)
T ss_pred             hHHHHHHHHHHhcccceeeeec---CCChhHhhhhccHHHHHHHHHHheee---cCccchhhHHHHHHhhhHhhhhhhhh
Confidence            3566778889999988777653   33566655554444444443433322   24456777776677788888899999


Q ss_pred             HhhccccCcceeeec-cchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCCC
Q 024756           92 FTGLKFSSPTLSSAM-ANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDH  170 (263)
Q Consensus        92 ~~gl~~~~a~~asii-~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~~  170 (263)
                      +.++++.+.++|.=+ +.+.=+-+.+.+++.+||..+..      +   .++++..++++..  |--..   |.+|..++
T Consensus        77 fka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~------~---~IlG~iAlilivi--G~~lT---s~~~~~nk  142 (288)
T COG4975          77 FKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPT------Q---IILGFIALILIVI--GIYLT---SKQDRNNK  142 (288)
T ss_pred             hhheeeeeeeccccccchhhHhhceeeeEEEEeccCcch------h---HHHHHHHHHHHHH--hheEe---eeeccccc
Confidence            999999999999866 45677788888999999987766      3   3444444444432  11111   11111101


Q ss_pred             CcccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 024756          171 PKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAAT  205 (263)
Q Consensus       171 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~  205 (263)
                         +.+...+...|....+.+.+.|-.|.++.+..
T Consensus       143 ---~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~f  174 (288)
T COG4975         143 ---EEENPSNLKKGIVILLISTLGYVGYVVLFQLF  174 (288)
T ss_pred             ---cccChHhhhhheeeeeeeccceeeeEeeeccc
Confidence               11223345578888888999999998887654

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=94.94  E-value=0.2  Score=43.91  Aligned_cols=188  Identities=11%  Similarity=-0.035  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 024756           12 PFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIGSSGQII   90 (263)
Q Consensus        12 ~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~   90 (263)
                      |+++.+++.+++|++++=.|.. + .-|++.+-++....-.+.-+. ..+ +  ..++.    .....+-|.+-+.++.+
T Consensus         1 G~~a~~va~~~fGs~~vPvK~~-~-~gDg~~fQw~~~~~i~~~g~~v~~~-~--~~p~f----~p~amlgG~lW~~gN~~   71 (254)
T PF07857_consen    1 GYIACIVAVLFFGSNFVPVKKF-D-TGDGFFFQWVMCSGIFLVGLVVNLI-L--GFPPF----YPWAMLGGALWATGNIL   71 (254)
T ss_pred             CchhHHHHHHHhcccceeeEec-c-CCCcHHHHHHHHHHHHHHHHHHHHh-c--CCCcc----eeHHHhhhhhhhcCcee
Confidence            3567789999999999999974 4 457755544443333332222 222 1  12222    12334556666778888


Q ss_pred             HHhhccccCcceeeeccch-hHHHHHHHHHH-HhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCC-C
Q 024756           91 YFTGLKFSSPTLSSAMANL-IPIYTFLLAVI-FRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSD-S  167 (263)
Q Consensus        91 ~~~gl~~~~a~~asii~~~-~Pv~~~ila~l-~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~-~  167 (263)
                      -.-.++..+.+.+-.+-++ .-+.-...+.+ +|+++.+.. +......+|++++++|..+..+-+.+......+.++ +
T Consensus        72 ~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~-~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~  150 (254)
T PF07857_consen   72 VVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVP-SSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETP  150 (254)
T ss_pred             ehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceecccccccc-chhHHHHHHHHHHHHHHHheeeecCCCCCccccccccc
Confidence            8888999998888888664 44444455544 454444333 223447899999999987765433222110000000 0


Q ss_pred             C--------CCC----ccccccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 024756          168 P--------DHP----KLLFSQQ-----SEWLIGGLLLVLVCISSAIWNVAQAATIRGY  209 (263)
Q Consensus       168 ~--------~~~----~~~~~~~-----~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~  209 (263)
                      .        +.+    .++...+     .+...|..+++.+.+.|+...+=.....++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~  209 (254)
T PF07857_consen  151 LSIEDVIEIEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP  209 (254)
T ss_pred             cccccccccccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence            0        001    0011111     1357899999999999999988777765554

The region concerned is approximately 280 residues long.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.90  E-value=0.73  Score=41.16  Aligned_cols=169  Identities=16%  Similarity=0.199  Sum_probs=109.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhccccCcceeeeccc--hhHHHHHH
Q 024756           39 NKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMAN--LIPIYTFL  116 (263)
Q Consensus        39 ~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~~~~gl~~~~a~~asii~~--~~Pv~~~i  116 (263)
                      ++..+++.+-+.+.++-..+...++++  ...++.|......++-..+...+.|.+++|.+==.-.+==+  ..|  +++
T Consensus        50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIP--Vml  125 (327)
T KOG1581|consen   50 HSLFLVFCQRLVALLVSYAMLKWWKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIP--VML  125 (327)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhccccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhH--HHH
Confidence            455666666666655544422112222  22334566677788888889999999999975322111112  344  456


Q ss_pred             HHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHH
Q 024756          117 LAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSA  196 (263)
Q Consensus       117 la~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a  196 (263)
                      ++.++.+.|.+.+      +.+...+.-.|+.+....++.+     |         ...++..+..+|..++...-+.=+
T Consensus       126 mg~Lvy~~ky~~~------eYl~~~LIs~GvsiF~l~~~s~-----s---------~~~~g~~ns~~G~~Ll~~~L~fDg  185 (327)
T KOG1581|consen  126 MGTLVYGRKYSSF------EYLVAFLISLGVSIFSLFPNSD-----S---------SSKSGRENSPIGILLLFGYLLFDG  185 (327)
T ss_pred             HHHHHhcCccCcH------HHHHHHHHHhheeeEEEecCCC-----C---------ccccCCCCchHhHHHHHHHHHHHh
Confidence            7788999999999      8888888888886655422211     0         012233355689999888888888


Q ss_pred             HHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHH
Q 024756          197 IWNVAQAATIRGYP-EEMTVVFFYTFFITIQALCFS  231 (263)
Q Consensus       197 ~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~l~~~  231 (263)
                      +-+..++++-++.. .+..+++...+++.+....-.
T Consensus       186 fTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~l  221 (327)
T KOG1581|consen  186 FTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYL  221 (327)
T ss_pred             hHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhh
Confidence            88888888877553 578888888888888776653

>TIGR00803 nst UDP-galactose transporter

Probab=94.90  E-value=0.048  Score=46.36  Aligned_cols=61  Identities=21%  Similarity=0.220  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHH
Q 024756           82 LIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAF  148 (263)
Q Consensus        82 ~l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~  148 (263)
                      +.......+..+.+++.++..-+....+.++++.+++.++++|+++..      ++.|+.+.+.|+.
T Consensus       160 ~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~------~~~g~~lV~~~~~  220 (222)
T TIGR00803       160 LLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISST------FYLGAILVFLATF  220 (222)
T ss_pred             HHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHH------HHHHHHHHHeeeE
Confidence            334667778899999999999999999999999999999999999999      9999999988864

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=94.11  E-value=0.36  Score=43.05  Aligned_cols=136  Identities=12%  Similarity=0.139  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALT-KGMNKFVSVVYYNALGTLILLPYFLFRRNKGA-----SLTWSLIWRFFLLGLI   83 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~-~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~-----~~~~~~~~~~~l~g~l   83 (263)
                      ..|+..+....++-|.+...-+.... ..+++.++...-.++.++.-....+......+     +.+.+.+..+.+....
T Consensus       171 ~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~~  250 (327)
T KOG1581|consen  171 PIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYSTC  250 (327)
T ss_pred             hHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHHh
Confidence            35777777777777777776666664 35889999888888888776552221111111     1234556677788888


Q ss_pred             HHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHH
Q 024756           84 GSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMIT  151 (263)
Q Consensus        84 ~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~  151 (263)
                      +..++.+-|.-++.-++-.-+.++.+-=.+..+++.+.++++++..      ||.|+.+.+.|..+=.
T Consensus       251 gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~------q~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  251 GAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSE------QWLGVLIVFGGIFLEI  312 (327)
T ss_pred             hhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchh------hccCeeeehHHHHHHH
Confidence            8889999999999888888888888889999999999999999999      9999999999986644

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=94.05  E-value=0.083  Score=39.72  Aligned_cols=62  Identities=13%  Similarity=0.158  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCCc-ccceeccCchhhhhhhHhhcc
Q 024756          193 ISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVENDI-DAWKLTTGVEIMAIVCTVRTH  259 (263)
Q Consensus       193 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~~~~~~~~~~l~y~g~~~  259 (263)
                      ++|+.+.+..|+..++. ++...+.+.+..+++ +++.....+... ..++   ...+..+.+.|.++
T Consensus         1 ~~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~   63 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKPFKNLS---PRQWLWLLFLGLLG   63 (126)
T ss_pred             ceeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhccccccCCC---hhhhhhhhHhhccc
Confidence            47999999999999998 599999999999998 666665554432 1111   12355555555553

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.91  E-value=0.55  Score=37.69  Aligned_cols=135  Identities=14%  Similarity=0.114  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIGSSGQ   88 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~   88 (263)
                      ....+..+.+..+-.....+--+..+..=+|+...+..+..+..++.. ....++........+...+...-|+++...-
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~v   83 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFV   83 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhh
Confidence            344555566666655555544443331225999999999999999888 6553322111111222233445577766555


Q ss_pred             HHHHhhccccCcceeeec-cchhHHHHHHHHHH-Hhh---ccccccccCccccchhHHHHHHHHHHH
Q 024756           89 IIYFTGLKFSSPTLSSAM-ANLIPIYTFLLAVI-FRI---EKLDLRRSSSQAKTLGATVAVTGAFMI  150 (263)
Q Consensus        89 ~~~~~gl~~~~a~~asii-~~~~Pv~~~ila~l-~~~---e~~~~~~~~~~~~~~g~~l~~~G~~ll  150 (263)
                      ..-.....+.+++....+ ..-.=+...+++.+ +++   .+++..      ++.|+++.++|++++
T Consensus        84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~------r~lgi~L~l~gil~~  144 (150)
T COG3238          84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLP------RILGILLVLAGILLA  144 (150)
T ss_pred             hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHH------HHHHHHHHHHHHHHh
Confidence            556666667666655444 33344555556654 232   445555      999999999995443

>KOG1443 consensus Predicted integral membrane protein [Function unknown]

Probab=93.07  E-value=2.1  Score=38.46  Aligned_cols=135  Identities=20%  Similarity=0.175  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHHHH-HHHHhhcCC-----------CCCCHHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKG----MNKFVSVVYYNALGTLILLP-YFLFRRNKG-----------ASLTWSL   73 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~----~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~-----------~~~~~~~   73 (263)
                      ..|+.....+.++=|.-|.+++..+.++    -+|++....-.-.-.+.++| .+..++...           +....+.
T Consensus       163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv  242 (349)
T KOG1443|consen  163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV  242 (349)
T ss_pred             ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence            4578888889999999999999888632    24666666655555566666 444443211           0011233


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHH
Q 024756           74 IWRFFLLGLIGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMI  150 (263)
Q Consensus        74 ~~~~~l~g~l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll  150 (263)
                      ...+.+.|.+.+.--..-+.=+..|+.-..++..-.-=+.+.+++..+.+|+++..      .+.|..++..|+..=
T Consensus       243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~l------N~~Gl~i~~agi~~~  313 (349)
T KOG1443|consen  243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLL------NWLGLAICLAGILLH  313 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhh------HHHHHHHHHHHHHHh
Confidence            33444444444333333445556666666666666667888999999999999999      999999999999774

>KOG2922 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.72  E-value=0.032  Score=49.93  Aligned_cols=119  Identities=23%  Similarity=0.327  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHH-HHHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIG-SSGQ   88 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~-~~~~   88 (263)
                      ..+.+..+.+.++.|+++++-|....+           ...      - -.|........- +.  .....|++. ..+-
T Consensus        20 ~~G~~LaissS~~Ig~sfilkKkgl~r-----------~~~------~-~~ra~~gg~~yl-~~--~~Ww~G~ltm~vGe   78 (335)
T KOG2922|consen   20 IIGLVLAISSSIFIGSSFILKKKGLKR-----------AGA------S-GLRAGEGGYGYL-KE--PLWWAGMLTMIVGE   78 (335)
T ss_pred             eeeeeehhhccEEEeeehhhhHHHHHH-----------Hhh------h-cccccCCCcchh-hh--HHHHHHHHHHHHHh
Confidence            345566777777788888888876431           100      0 001000001111 12  233456666 6677


Q ss_pred             HHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCc
Q 024756           89 IIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGP  156 (263)
Q Consensus        89 ~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~  156 (263)
                      ..-|.++.+.|++..+-+..+.-+..++++..+++||++..      -.+|.+++++|..+++. +.|
T Consensus        79 i~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~------g~lGc~l~v~Gst~iV~-haP  139 (335)
T KOG2922|consen   79 IANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLL------GILGCVLCVVGSTTIVI-HAP  139 (335)
T ss_pred             HhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHh------hhhheeEEecccEEEEE-ecC
Confidence            77778888888888888889999999999999999999999      99999999999988875 444

>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.62  E-value=1.3  Score=39.67  Aligned_cols=135  Identities=19%  Similarity=0.195  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHH-HHHHhhc-----CCCC-CCHHHHHHHHHHHH
Q 024756           11 IPFVAMVTVECTDVGLSVISKAALT-KGMNKFVSVVYYNALGTLILLP-YFLFRRN-----KGAS-LTWSLIWRFFLLGL   82 (263)
Q Consensus        11 ~~~~~~l~a~~~wg~~~~~~K~~~~-~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~-----~~~~-~~~~~~~~~~l~g~   82 (263)
                      .|+.++....+.=....+..|...+ .+.+-+.+..+..+++.+.+.. .++....     +.+. ...+.+..+.+-++
T Consensus       157 ~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv  236 (314)
T KOG1444|consen  157 RGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCV  236 (314)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHH
Confidence            4677877777777788888888775 3567788899999998888777 4443210     0111 11234455666677


Q ss_pred             HHHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHH
Q 024756           83 IGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMIT  151 (263)
Q Consensus        83 l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~  151 (263)
                      ++..-.++-+++.+..|++.-++.....=..+.+...++.+++.++.      ..+|+.+++.|-++=.
T Consensus       237 ~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~------n~~gll~~~~ggv~Y~  299 (314)
T KOG1444|consen  237 MGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL------NVIGLLVGFFGGVLYS  299 (314)
T ss_pred             HHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh------hhHHHHHHhhhhhHHh
Confidence            77777778889999999999888885555666666666788999999      9999999999987754

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=91.72  E-value=1.4  Score=37.80  Aligned_cols=125  Identities=18%  Similarity=0.173  Sum_probs=93.8

Q ss_pred             HHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCCC
Q 024756           91 YFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDH  170 (263)
Q Consensus        91 ~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~~  170 (263)
                      --.++||.+...=+++-+++-+.++.....+|+.|++..      ...+.++.+...+....  ++. +           
T Consensus        85 ~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl------~l~SFilMvlSS~va~w--~D~-q-----------  144 (309)
T COG5070          85 SSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSL------ELLSFILMVLSSVVATW--GDQ-Q-----------  144 (309)
T ss_pred             cccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchh------hHHHHHHHHHHHHHhcc--chh-h-----------
Confidence            357888988888888888888899999999999999999      88888888777766543  110 0           


Q ss_pred             CcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhCC-chHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024756          171 PKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQAATIRGYP-EEMTVVFFYTFFITIQALCFSVIVEND  237 (263)
Q Consensus       171 ~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~i~~l~~~~~~~~~  237 (263)
                        ....-....+.|.+++...++.-+.|....|+..+-.. ..+..++|..+.+...++.+..+.|+.
T Consensus       145 --~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edw  210 (309)
T COG5070         145 --ASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDW  210 (309)
T ss_pred             --HHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccC
Confidence              00000112235899999999999999999988655221 357788999999999999999888764

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=91.10  E-value=0.99  Score=35.50  Aligned_cols=54  Identities=17%  Similarity=0.237  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhh------CCchHHHHHHHHHHHHHHHHHHHHHhcCC
Q 024756          184 GGLLLVLVCISSAIWNVAQAATIRG------YPEEMTVVFFYTFFITIQALCFSVIVEND  237 (263)
Q Consensus       184 G~~~~l~aa~~~a~~~v~~k~~~~~------~~~~~~~~~~~~~~~~i~~l~~~~~~~~~  237 (263)
                      |..+.+.|.++.|++.++.|+..++      ..++.....+....+.+.+++.+.+.|+.
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~   60 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGP   60 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            5788999999999999999997666      22689999999999999999998887764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]

Probab=88.03  E-value=3.5  Score=36.53  Aligned_cols=169  Identities=17%  Similarity=0.083  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhcccc-CcceeeeccchhHHHHHHHH
Q 024756           41 FVSVVYYNALGTLILLP-YFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIYFTGLKFS-SPTLSSAMANLIPIYTFLLA  118 (263)
Q Consensus        41 ~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~~~~gl~~~-~a~~asii~~~~Pv~~~ila  118 (263)
                      ..+++.+|++-+.-=++ .--..+ .+++.+.|++..  .+.++ +..+.+-++++++- +--.=.++-+-.++.+.+++
T Consensus        34 NLITFaqFlFia~eGlif~skf~~-~k~kiplk~Y~i--~V~mF-F~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g  109 (330)
T KOG1583|consen   34 NLITFAQFLFIATEGLIFTSKFFT-VKPKIPLKDYAI--TVAMF-FIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILG  109 (330)
T ss_pred             eehHHHHHHHHHHhceeeeccccc-cCCCCchhhhhe--ehhee-eeeeeeccceeeecccceEEEEEecCcHHHHHHHH
Confidence            55677777776554444 211111 124555555433  22222 33445556677664 44445566678899999999


Q ss_pred             HHHhhccccccccCccccchhHHHHHHHHHHHHhhcCccccccCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHH
Q 024756          119 VIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITLYRGPLLLMASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIW  198 (263)
Q Consensus       119 ~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~  198 (263)
                      +++.++|-+.+      |..++++.-+|+++-...+.++.+.-++..    +..+..+....+..|..+...|-+.-|.-
T Consensus       110 ~il~~k~Ys~~------Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l----~~~~~~~~~~~w~iGi~lL~~al~~sa~m  179 (330)
T KOG1583|consen  110 WILLGKRYSLR------QYSSVLMITIGIIICTLFSSKDGRSKLSGL----DSGSAQSDFFWWLIGIALLVFALLLSAYM  179 (330)
T ss_pred             HHhccceeehh------hhhhHHhhhhhheeEEeecCcchhhhhccc----ccCcccccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999      999999999999887754333222100000    00011122345678998888888888888


Q ss_pred             HHHHHHHhhhCC-chHHHHHHHHHHH
Q 024756          199 NVAQAATIRGYP-EEMTVVFFYTFFI  223 (263)
Q Consensus       199 ~v~~k~~~~~~~-~~~~~~~~~~~~~  223 (263)
                      .+.++..-+++. ++-...++.=...
T Consensus       180 giyqE~~Y~kyGKh~~EalFytH~Ls  205 (330)
T KOG1583|consen  180 GIYQETTYQKYGKHWKEALFYTHFLS  205 (330)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhc
Confidence            888887777664 3455555444333

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=86.27  E-value=0.81  Score=39.78  Aligned_cols=134  Identities=18%  Similarity=0.188  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQI   89 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~   89 (263)
                      .|++..++.+.+-|-...+..+..--++.+...--+.-++++++++..   +  +..++.++..|+. ..-|++-+.++.
T Consensus       151 kkgi~~L~iSt~GYv~yvvl~~~f~v~g~saiLPqAiGMv~~ali~~~---~--~~~~~~~K~t~~n-ii~G~~Wa~GNl  224 (288)
T COG4975         151 KKGIVILLISTLGYVGYVVLFQLFDVDGLSAILPQAIGMVIGALILGF---F--KMEKRFNKYTWLN-IIPGLIWAIGNL  224 (288)
T ss_pred             hhheeeeeeeccceeeeEeeeccccccchhhhhHHHHHHHHHHHHHhh---c--ccccchHHHHHHH-HhhHHHHHhhHH
Confidence            345555555555554333333321111344444444445555544322   1  1122345555554 455777788889


Q ss_pred             HHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHH
Q 024756           90 IYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMIT  151 (263)
Q Consensus        90 ~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~  151 (263)
                      +++.+-+..+.+.+=.+..+.-+...+-+.++++||-+++++  ...+.|+++.++|.+++.
T Consensus       225 ~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm--~~v~iGiilivvgai~lg  284 (288)
T COG4975         225 FMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEM--VYVIIGIILIVVGAILLG  284 (288)
T ss_pred             HHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhh--hhhhhhHHHHHHHhhhhh
Confidence            999999988888777777777778888888899999999843  124566777777776653

>KOG4831 consensus Unnamed protein [Function unknown]

Probab=86.09  E-value=13  Score=28.13  Aligned_cols=115  Identities=19%  Similarity=0.238  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHH--HHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 024756           14 VAMVTVECTDVGLSVISKAALTKGMNKFVSV--VYYNALGTLILLPYFLFRRNKGASLTWSLIWRFFLLGLIGSSGQIIY   91 (263)
Q Consensus        14 ~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~--~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~l~g~l~~~~~~~~   91 (263)
                      ..++.+.++||.+.++.|.... +.+..--.  -+|.          ..++-+ ...++++.+.. +   .+.-.+..+|
T Consensus         6 ~~lvaVgllWG~Tnplirrgs~-g~~~v~~~~~k~~~----------~lqe~~-tl~l~w~Y~iP-F---llNqcgSaly   69 (125)
T KOG4831|consen    6 DKLVAVGLLWGATNPLIRRGSL-GWDKVKSSSRKIMI----------ALQEMK-TLFLNWEYLIP-F---LLNQCGSALY   69 (125)
T ss_pred             HHHHHHHHHHccccHHHHHHHh-hHhhccCchHHHHH----------HHHHHH-HHHHhHHHHHH-H---HHHHhhHHHH
Confidence            4567889999999999998754 33221111  1111          111100 00122222221 1   1224566789


Q ss_pred             HhhccccCcceeeeccc-hhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHH
Q 024756           92 FTGLKFSSPTLSSAMAN-LIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMI  150 (263)
Q Consensus        92 ~~gl~~~~a~~asii~~-~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll  150 (263)
                      |.-+++++-+.|.=+.+ +.=.++++.+..+..|-...+      .+.|..+.++|..+.
T Consensus        70 ~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~------a~lGt~liv~Gi~Lc  123 (125)
T KOG4831|consen   70 YLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGL------ALLGTSLIVFGIWLC  123 (125)
T ss_pred             HHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccce------eehhhhHHhhhhhhe
Confidence            99999999999997755 455588888886555555556      889999999887654

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=85.71  E-value=24  Score=32.22  Aligned_cols=179  Identities=16%  Similarity=0.203  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HHHHhh-cC----CCCCCHHHHHHHHHHHHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKGMNKFVSVVYYNALGTLILLP-YFLFRR-NK----GASLTWSLIWRFFLLGLI   83 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~~~p~~~~~~R~~~a~l~ll~-~~~~~~-~~----~~~~~~~~~~~~~l~g~l   83 (263)
                      ..++++..++.++=|+.++=.|..-+   =..+..+.-..+-.-++.| ..-.-. .+    -...+...+...++.|++
T Consensus         6 i~Gii~h~iGg~~~~sfy~P~kkvk~---WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~l   82 (344)
T PF06379_consen    6 ILGIIFHAIGGFASGSFYVPFKKVKG---WSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVL   82 (344)
T ss_pred             HHHHHHHHHHHHHhhhhccchhhcCC---ccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHH
Confidence            45778888888888888888887532   2344444444444445555 321111 00    012344566677778888


Q ss_pred             HHHHHHHHHhhccccCcceeeec-cchhHHHHHHHHHHHhhcccc--ccccCccccchhHHHHHHHHHHHHhhcCccccc
Q 024756           84 GSSGQIIYFTGLKFSSPTLSSAM-ANLIPIYTFLLAVIFRIEKLD--LRRSSSQAKTLGATVAVTGAFMITLYRGPLLLM  160 (263)
Q Consensus        84 ~~~~~~~~~~gl~~~~a~~asii-~~~~Pv~~~ila~l~~~e~~~--~~~~~~~~~~~g~~l~~~G~~ll~~~~~~~~~~  160 (263)
                      -++....|=.+++|++.+...-+ ..+.-++-.++--++.++ .+  ..+...+..++|++++++|+.+.... |...+-
T Consensus        83 WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~-~~~l~~~~~g~~vL~Gv~v~LiGIai~g~A-G~~Ke~  160 (344)
T PF06379_consen   83 WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGT-FDELLATPSGQIVLLGVAVCLIGIAICGKA-GSMKEK  160 (344)
T ss_pred             HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCc-ccccccCCCchhhhhHHHHHHHHHHHHhHH-HHhhhh
Confidence            88888899999999987766544 444444444443333221 11  11123445899999999999887532 211000


Q ss_pred             cCCCCCCCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 024756          161 ASSTSDSPDHPKLLFSQQSEWLIGGLLLVLVCISSAIWNVAQA  203 (263)
Q Consensus       161 ~~s~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~~~a~~~v~~k  203 (263)
                      +        +.  +...+.+...|...++.|.+.-|.+++-..
T Consensus       161 ~--------~~--~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~  193 (344)
T PF06379_consen  161 E--------LG--EEAKEFNFKKGLIIAVLSGVMSACFNFGLD  193 (344)
T ss_pred             h--------hc--cchhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            0        00  112234556799999999998888887654

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG3912 consensus Predicted integral membrane protein [General function prediction only]

Probab=85.67  E-value=3.5  Score=36.66  Aligned_cols=135  Identities=16%  Similarity=0.211  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHHH----H-HHHHhhcC---CCCCCHHHHHHHH--
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAAL-TKGMNKFVSVVYYNALGTLILL----P-YFLFRRNK---GASLTWSLIWRFF--   78 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~-~~~~~p~~~~~~R~~~a~l~ll----~-~~~~~~~~---~~~~~~~~~~~~~--   78 (263)
                      ..|.++++.+.++-+.-.+.=..-+ .++++|.+.+.+.-.++.+++-    | .++.-.+.   .++-.+.||...+  
T Consensus       175 itGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~  254 (372)
T KOG3912|consen  175 ITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAA  254 (372)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHH
Confidence            3577889999999999888765554 3579999999999988855433    2 22211100   1222344554332  


Q ss_pred             -------HHHHHH-HHHHHHHH-hh---ccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHH
Q 024756           79 -------LLGLIG-SSGQIIYF-TG---LKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTG  146 (263)
Q Consensus        79 -------l~g~l~-~~~~~~~~-~g---l~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G  146 (263)
                             .+...+ ..+-.+|+ .|   -|+.++++=.++-..-..++.+++..+..|++...      |+.|.++-..|
T Consensus       255 ~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~ll------qilGFliLi~G  328 (372)
T KOG3912|consen  255 LQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLL------QILGFLILIMG  328 (372)
T ss_pred             hcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHH------HHHHHHHHHHH
Confidence                   122222 11222222 22   24557888888888888899999999999999999      99999999999


Q ss_pred             HHHH
Q 024756          147 AFMI  150 (263)
Q Consensus       147 ~~ll  150 (263)
                      .++-
T Consensus       329 i~lY  332 (372)
T KOG3912|consen  329 IILY  332 (372)
T ss_pred             HHHH
Confidence            8764

>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]

Probab=84.62  E-value=2.5  Score=37.37  Aligned_cols=136  Identities=15%  Similarity=0.167  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHH-HHHHhhc--CC---CCCCHHHHHHHHHHHH
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALT-KGMNKFVSVVYYNALGTLILLP-YFLFRRN--KG---ASLTWSLIWRFFLLGL   82 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~-~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~--~~---~~~~~~~~~~~~l~g~   82 (263)
                      ..++..+-.+.+.-+.-.-+-..+.. +.-+..+++++.+.++.+.++. +.....-  -+   ...++|.....++.++
T Consensus       189 ~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~  268 (367)
T KOG1582|consen  189 LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSL  268 (367)
T ss_pred             eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHH
Confidence            34555555555555555555444442 2345677788888888887766 5442110  01   1234566666666666


Q ss_pred             HHHHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHH
Q 024756           83 IGSSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMIT  151 (263)
Q Consensus        83 l~~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~  151 (263)
                      .++++.-+..-=++.-++..++.++..--..+.+++.++|.++++..      ...|.++.+.|+.+=.
T Consensus       269 ~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~q------y~~~gllv~lgI~Ln~  331 (367)
T KOG1582|consen  269 AGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQ------YVWSGLLVVLGIYLNM  331 (367)
T ss_pred             HhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHH------HhhhhHHHHHHHHhhc
Confidence            66666666666666668888888888888899999999999999999      8999999999997754

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=84.56  E-value=3.3  Score=35.65  Aligned_cols=133  Identities=17%  Similarity=0.225  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHHH-HHHHhhcCCC-----CCCHHHHHHHHHHHHHH
Q 024756           12 PFVAMVTVECTDVGLSVISKAALT-KGMNKFVSVVYYNALGTLILLP-YFLFRRNKGA-----SLTWSLIWRFFLLGLIG   84 (263)
Q Consensus        12 ~~~~~l~a~~~wg~~~~~~K~~~~-~~~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~-----~~~~~~~~~~~l~g~l~   84 (263)
                      |++++....+.=+..-..+|...+ +..--++..++..+++..+++. .+..+. +.+     .++...+...+..|+..
T Consensus       156 GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~ed-ws~~n~annl~~d~l~am~ISgl~s  234 (309)
T COG5070         156 GYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFED-WSPGNLANNLSVDSLMAMFISGLCS  234 (309)
T ss_pred             ceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhcc-CCcchhhcCCChHHHHHHHHHHHHH
Confidence            334444333333333344444332 2456788899999999999888 554432 121     12222333455556665


Q ss_pred             HHHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHH
Q 024756           85 SSGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMIT  151 (263)
Q Consensus        85 ~~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~  151 (263)
                      ..-.++--|.++.++++.-+....+.-.-.++-+..+++|+.+..      .+.++++++...++-.
T Consensus       235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~------si~sillGflsg~iYa  295 (309)
T COG5070         235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFL------SIFSILLGFLSGAIYA  295 (309)
T ss_pred             hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHH------HHHHHHHHHHHHHHHH
Confidence            555566778898888888887877777777888888999999999      9999999987665543

>COG2510 Predicted membrane protein [Function unknown]

Probab=81.48  E-value=6.9  Score=30.68  Aligned_cols=51  Identities=14%  Similarity=0.125  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHhcC
Q 024756          185 GLLLVLVCISSAIWNVAQAATIRGYPEEMTVVFFYTFFITIQALCFSVIVEN  236 (263)
Q Consensus       185 ~~~~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~  236 (263)
                      ..+.+++++.+++-.++.|--.++. ||...++...++..+.+..+....++
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~   55 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGN   55 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCc
Confidence            6789999999999999999888888 58888998888888888877766654

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=80.32  E-value=16  Score=31.72  Aligned_cols=126  Identities=13%  Similarity=0.104  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHHHH-HHHHhhcCCCCC-CHHHHHHHHHHHHHH-H
Q 024756           10 TIPFVAMVTVECTDVGLSVISKAALTKG-MNKFVSVVYYNALGTLILLP-YFLFRRNKGASL-TWSLIWRFFLLGLIG-S   85 (263)
Q Consensus        10 ~~~~~~~l~a~~~wg~~~~~~K~~~~~~-~~p~~~~~~R~~~a~l~ll~-~~~~~~~~~~~~-~~~~~~~~~l~g~l~-~   85 (263)
                      ..|.++++++.++=|...+.....+.++ .+...-...=...+.++.++ ....++.+.... -.+.+-...+.-++. .
T Consensus       113 ~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~~a  192 (244)
T PF04142_consen  113 LLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFLQA  192 (244)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHHHH
Confidence            4678888999999999999998888633 34444444445666666655 444322111100 011111112222222 4


Q ss_pred             HHHHHHHhhccccCcceeeeccchhHHHHHHHHHHHhhccccccccCccccchhHH
Q 024756           86 SGQIIYFTGLKFSSPTLSSAMANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGAT  141 (263)
Q Consensus        86 ~~~~~~~~gl~~~~a~~asii~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~  141 (263)
                      .+-+..-.-+||.+.-.=..-....-+++.+++..+++.+++..      ..+|..
T Consensus       193 ~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~------f~lg~~  242 (244)
T PF04142_consen  193 IGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLS------FLLGAA  242 (244)
T ss_pred             HhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchH------Hhhhee
Confidence            44455566777877665555666777889999999999999998      777654

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.41
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.33

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.41  E-value=2.4e-07  Score=72.35  Aligned_cols=68  Identities=19%  Similarity=0.260  Sum_probs=52.2

Q ss_pred             HHHHHH-HHHHHHHHhhccccCcceeeec-cchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           79 LLGLIG-SSGQIIYFTGLKFSSPTLSSAM-ANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        79 l~g~l~-~~~~~~~~~gl~~~~a~~asii-~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      +.+++. .+++.++..++++.+++.+..+ .++.|+++.++++++++|+++..      +++|+++.++|++++..
T Consensus        34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~------~~~Gi~LIi~GV~ll~~  103 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            456666 8899999999999999999888 89999999999999999999999      99999999999999875

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.33  E-value=6.8e-07  Score=67.19  Aligned_cols=68  Identities=19%  Similarity=0.260  Sum_probs=62.2

Q ss_pred             HHHHHH-HHHHHHHHhhccccCcceeeec-cchhHHHHHHHHHHHhhccccccccCccccchhHHHHHHHHHHHHh
Q 024756           79 LLGLIG-SSGQIIYFTGLKFSSPTLSSAM-ANLIPIYTFLLAVIFRIEKLDLRRSSSQAKTLGATVAVTGAFMITL  152 (263)
Q Consensus        79 l~g~l~-~~~~~~~~~gl~~~~a~~asii-~~~~Pv~~~ila~l~~~e~~~~~~~~~~~~~~g~~l~~~G~~ll~~  152 (263)
                      ..+++. ..++.++..++++.|.+.+..+ ..+.|+++.++++++++|+++..      |++|+.+.+.|++++..
T Consensus        34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~------~~~Gi~lIi~Gv~~l~~  103 (110)
T 3b5d_A           34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLP------AIIGMMLICAGVLIINL  103 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHH------HHHHHHHHHHHHHHHhc
Confidence            455666 8899999999999999999887 79999999999999999999999      99999999999998864

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00