Citrus Sinensis ID: 024761

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
MENYEQSKIGSKAHTVLHCIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLCHFHFPALLCLLVY
ccccccccccccccccccEEccccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHcccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEccccccccccccccccccccccccccEEEEcccccccEEEEccccccccEEEcccccccEEEEccHHHHHccccc
ccccccccccccccccccEEEcccccHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccEccccccccccccccccHHEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcHcccccccEEEEEEcccccccccccEEEcccccccccEEEEEEccccccEEEEEcccccccEEEEcccccccEEEEccHHHHHHHHHc
menyeqskigskahTVLHcidlsspdihqSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSkrffnlplNEKIKVLRnekhrgytplhdelldpdtqvhgdykegyyigvevpegdpesekpfygpnvwpapdilpgwrETMDRFHQEALEVAKVVARIIALALDlnadffdkpeilgepiATLRLLhyegqtsdpskgiygagahsdfGLITLLATDEVlglqickdkdakpqiweyvpplkglvlchFHFPALLCLLVY
menyeqskigskaHTVLHCIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHrgytplhdelldpdtqvHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLCHFHFPALLCLLVY
MENYEQSKIGSKAHTVLHCIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLCHFHFPALLCLLVY
************AHTVLHCIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEV*********PFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLCHFHFPALLCLLV*
*****************HCIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDELL***TQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTS********AGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLCHFHFPALLCLLVY
MENYEQSKIGSKAHTVLHCIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLCHFHFPALLCLLVY
********IGSKAHTVLHCIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLCHFHFPALLCLLVY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MENYEQSKIGSKAHTVLHCIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLCHFHFPALLCLLVY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query263 2.2.26 [Sep-21-2011]
Q54RA4363 Probable iron/ascorbate o yes no 0.787 0.570 0.301 5e-23
A6BM06368 1-aminocyclopropane-1-car N/A no 0.851 0.608 0.282 6e-18
Q76NT9368 1-aminocyclopropane-1-car no no 0.851 0.608 0.282 6e-18
Q7LL04321 UPF0676 protein C1494.01 yes no 0.821 0.672 0.334 5e-17
P40902397 Sexual differentiation pr no no 0.825 0.546 0.257 4e-14
Q40062339 2'-deoxymugineic-acid 2'- N/A no 0.840 0.651 0.267 8e-13
Q39224358 Protein SRG1 OS=Arabidops no no 0.730 0.536 0.295 5e-12
Q9LHN8361 Feruloyl CoA ortho-hydrox no no 0.794 0.578 0.268 9e-11
Q96330336 Flavonol synthase/flavano no no 0.726 0.568 0.265 2e-10
Q9M547334 Flavonol synthase/flavano N/A no 0.775 0.610 0.275 4e-10
>sp|Q54RA4|Y3291_DICDI Probable iron/ascorbate oxidoreductase DDB_G0283291 OS=Dictyostelium discoideum GN=DDB_G0283291 PE=3 SV=1 Back     alignment and function desciption
 Score =  108 bits (269), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 73/242 (30%), Positives = 129/242 (53%), Gaps = 35/242 (14%)

Query: 34  LKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKV---LRNEKHRGYTPLH 90
           ++ AC + GFFY+  HGI QE +D +   SK+FF+L  + K+K    L  +  RGY  + 
Sbjct: 38  IENACKNFGFFYIKGHGIDQELIDRLERLSKKFFSLDQSIKMKYRMELAQKAWRGYFVVG 97

Query: 91  DELLDPDTQVHGDYKEGYYIGVEVPEGDPE--SEKPFYGPNVWPAP------DILPGWRE 142
            EL    T    D+KEG Y+G E+ +  P   ++ P +G N++P        DI+ G+++
Sbjct: 98  GEL----TSGLKDWKEGLYLGTELNDDHPLVIAQTPLHGLNLFPTLEEEIEYDIV-GFKD 152

Query: 143 TMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHY----------- 191
           T+  +  +  ++   +  +IA++L+L+AD+F       +P+   R+ +Y           
Sbjct: 153 TILTYIDKVTKLGHSLMELIAISLNLSADYF-SSRYTKDPLILYRIFNYPSIISSGDDNK 211

Query: 192 -EGQTSDPSKGI-YGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVL 249
             G++SD +  + +G G H+D+G++T+L  D+V GLQ+          W   PP+KG  +
Sbjct: 212 TTGESSDDNDKVEWGVGEHTDYGVLTILYQDDVGGLQVHSKNG-----WISAPPIKGTFV 266

Query: 250 CH 251
           C+
Sbjct: 267 CN 268

Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: 1EC: 4EC: .EC: -EC: .EC: -
>sp|A6BM06|ACCO1_DICMU 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium mucoroides GN=aco PE=3 SV=1 Back     alignment and function description
>sp|Q76NT9|ACCO1_DICDI 1-aminocyclopropane-1-carboxylate oxidase OS=Dictyostelium discoideum GN=aco PE=2 SV=1 Back     alignment and function description
>sp|Q7LL04|YQK1_SCHPO UPF0676 protein C1494.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1494.01 PE=3 SV=2 Back     alignment and function description
>sp|P40902|ISP7_SCHPO Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=isp7 PE=2 SV=1 Back     alignment and function description
>sp|Q40062|IDS3_HORVU 2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3 Back     alignment and function description
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function description
>sp|Q9LHN8|F6H1_ARATH Feruloyl CoA ortho-hydroxylase 1 OS=Arabidopsis thaliana GN=F6'H1 PE=1 SV=1 Back     alignment and function description
>sp|Q96330|FLS1_ARATH Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query263
225445104358 PREDICTED: probable iron/ascorbate oxido 0.935 0.687 0.801 1e-114
297738763330 unnamed protein product [Vitis vinifera] 0.935 0.745 0.801 1e-113
225445102 364 PREDICTED: probable iron/ascorbate oxido 0.935 0.675 0.782 1e-112
224143627268 2-oxoglutarate-dependent dioxygenase [Po 0.958 0.940 0.752 1e-110
224143624336 predicted protein [Populus trichocarpa] 0.904 0.708 0.778 1e-109
255636224331 unknown [Glycine max] 0.931 0.740 0.759 1e-109
255546339340 Hyoscyamine 6-dioxygenase, putative [Ric 0.958 0.741 0.734 1e-108
356495885331 PREDICTED: probable iron/ascorbate oxido 0.931 0.740 0.755 1e-108
388522983340 unknown [Medicago truncatula] 0.904 0.7 0.768 1e-106
255641899331 unknown [Glycine max] 0.920 0.731 0.753 1e-105
>gi|225445104|ref|XP_002283713.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 202/252 (80%), Positives = 222/252 (88%), Gaps = 6/252 (2%)

Query: 1   MENYEQSKIGSKAHTVLHCIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVF 60
           MEN  QS       +VL+CIDLSSPDIH+SVSLLKQACLD GFFYVINHGISQEFMDEVF
Sbjct: 29  MENRGQS------FSVLNCIDLSSPDIHKSVSLLKQACLDSGFFYVINHGISQEFMDEVF 82

Query: 61  TQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPE 120
            QSKRFF LPL+EK+K LRNEKHRGYTP+ DE+LDP+ QV+GDYKEGYYIGVEVPE DP+
Sbjct: 83  AQSKRFFTLPLSEKMKHLRNEKHRGYTPVLDEVLDPENQVNGDYKEGYYIGVEVPEHDPK 142

Query: 121 SEKPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILG 180
           SEKPFYGPNVWPA D LP WR+TM++FHQEALEVAK VARIIALALDL  DFFDKPE+LG
Sbjct: 143 SEKPFYGPNVWPAADRLPEWRQTMEKFHQEALEVAKAVARIIALALDLERDFFDKPEMLG 202

Query: 181 EPIATLRLLHYEGQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEY 240
           +PIATLRLLHYEGQ SDP KGIYGAGAHSD+GLITLLATD+VLGLQICKDKDA+PQ WEY
Sbjct: 203 DPIATLRLLHYEGQISDPLKGIYGAGAHSDYGLITLLATDDVLGLQICKDKDARPQTWEY 262

Query: 241 VPPLKGLVLCHF 252
           V PLKG  + + 
Sbjct: 263 VAPLKGAFIVNL 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738763|emb|CBI28008.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225445102|ref|XP_002283708.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224143627|ref|XP_002325021.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi|222866455|gb|EEF03586.1| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224143624|ref|XP_002325020.1| predicted protein [Populus trichocarpa] gi|222866454|gb|EEF03585.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255636224|gb|ACU18453.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255546339|ref|XP_002514229.1| Hyoscyamine 6-dioxygenase, putative [Ricinus communis] gi|223546685|gb|EEF48183.1| Hyoscyamine 6-dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356495885|ref|XP_003516801.1| PREDICTED: probable iron/ascorbate oxidoreductase DDB_G0283291-like [Glycine max] Back     alignment and taxonomy information
>gi|388522983|gb|AFK49553.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255641899|gb|ACU21218.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query263
TAIR|locus:2203325329 AT1G35190 [Arabidopsis thalian 0.912 0.729 0.682 2.1e-93
TAIR|locus:2075125330 AT3G46490 [Arabidopsis thalian 0.931 0.742 0.638 6e-87
TAIR|locus:2078241286 AT3G46480 [Arabidopsis thalian 0.418 0.384 0.684 2e-61
TAIR|locus:2075130251 AT3G46500 [Arabidopsis thalian 0.623 0.653 0.569 4.3e-54
TAIR|locus:504955434247 AT4G16765 [Arabidopsis thalian 0.593 0.631 0.481 1.2e-35
ASPGD|ASPL0000035942349 AN11188 [Emericella nidulans ( 0.790 0.595 0.394 3e-30
UNIPROTKB|G4NB73346 MGG_00611 "2OG-Fe(II) oxygenas 0.787 0.598 0.348 3.9e-28
ASPGD|ASPL0000060477332 AN0526 [Emericella nidulans (t 0.752 0.596 0.356 1.8e-25
ASPGD|ASPL0000042094 375 AN10323 [Emericella nidulans ( 0.832 0.584 0.313 1.9e-21
TIGR_CMR|SPO_2669317 SPO_2669 "oxidoreductase, 2OG- 0.673 0.558 0.356 2.4e-21
TAIR|locus:2203325 AT1G35190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 930 (332.4 bits), Expect = 2.1e-93, P = 2.1e-93
 Identities = 168/246 (68%), Positives = 206/246 (83%)

Query:     1 MENYEQSKIGSKAHTVLHCIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVF 60
             MEN+   K+ S     L+CIDL++ D++ SV  LKQACLDCGFFYVINHGIS+EFMD+VF
Sbjct:     1 MENHTTMKVSS-----LNCIDLANDDLNHSVVSLKQACLDCGFFYVINHGISEEFMDDVF 55

Query:    61 TQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPE 120
              QSK+ F LPL EK+KVLRNEKHRGYTP+ DELLDP  Q++GD+KEGYYIG+EVP+ DP 
Sbjct:    56 EQSKKLFALPLEEKMKVLRNEKHRGYTPVLDELLDPKNQINGDHKEGYYIGIEVPKDDPH 115

Query:   121 SEKPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILG 180
              +KPFYGPN WP  D+LPGWRETM+++HQEAL V+  +AR++ALALDL+  +FD+ E+LG
Sbjct:   116 WDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIARLLALALDLDVGYFDRTEMLG 175

Query:   181 EPIATLRLLHYEGQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEY 240
             +PIAT+RLL Y+G  SDPSKGIY  GAHSDFG++TLLATD V+GLQICKDK+A PQ WEY
Sbjct:   176 KPIATMRLLRYQG-ISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEY 234

Query:   241 VPPLKG 246
             VPP+KG
Sbjct:   235 VPPIKG 240
GO:0005506 "iron ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0009821 "alkaloid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2075125 AT3G46490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078241 AT3G46480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075130 AT3G46500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955434 AT4G16765 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000035942 AN11188 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|G4NB73 MGG_00611 "2OG-Fe(II) oxygenase" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000060477 AN0526 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
ASPGD|ASPL0000042094 AN10323 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2669 SPO_2669 "oxidoreductase, 2OG-Fe(II) oxygenase family" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-123
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-54
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 7e-47
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 2e-38
PLN02485329 PLN02485, PLN02485, oxidoreductase 3e-33
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-19
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 7e-17
PLN02216357 PLN02216, PLN02216, protein SRG1 4e-16
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 4e-15
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 5e-15
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 2e-13
PLN02704335 PLN02704, PLN02704, flavonol synthase 2e-12
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 3e-12
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 3e-12
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 6e-12
PLN02997325 PLN02997, PLN02997, flavonol synthase 8e-12
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 3e-10
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 6e-10
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-09
PLN02904357 PLN02904, PLN02904, oxidoreductase 8e-09
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 1e-08
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 2e-08
PLN02947374 PLN02947, PLN02947, oxidoreductase 3e-07
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 7e-07
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 3e-06
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 4e-06
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 1e-04
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 2e-04
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  354 bits (909), Expect = e-123
 Identities = 165/246 (67%), Positives = 208/246 (84%), Gaps = 3/246 (1%)

Query: 1   MENYEQSKIGSKAHTVLHCIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVF 60
           MEN+  +K  +   + L+CIDL++ D++ SV+ LKQACLDCGFFYVINHGI++EFMD+VF
Sbjct: 1   MENH--TKDSTMKVSSLNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVF 58

Query: 61  TQSKRFFNLPLNEKIKVLRNEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPE 120
            QSK+FF LPL EK+KVLRNEKHRGYTP+ DE LDP  Q++GD+KEGYYIG+EVP+ DP 
Sbjct: 59  EQSKKFFALPLEEKMKVLRNEKHRGYTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPH 118

Query: 121 SEKPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILG 180
            +KPFYGPN WP  D+LPGWRETM+++HQEAL V+  +A+++ALALDL+  +FD+ E+LG
Sbjct: 119 WDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGYFDRTEMLG 178

Query: 181 EPIATLRLLHYEGQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEY 240
           +PIAT+RLL Y+G  SDPSKGIY  GAHSDFG++TLLATD V+GLQICKDK+A PQ WEY
Sbjct: 179 KPIATMRLLRYQG-ISDPSKGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEY 237

Query: 241 VPPLKG 246
           VPP+KG
Sbjct: 238 VPPIKG 243

Length = 332
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 263
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02485329 oxidoreductase 100.0
PLN02997325 flavonol synthase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02947374 oxidoreductase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.96
PLN03176120 flavanone-3-hydroxylase; Provisional 99.8
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.53
PRK08130213 putative aldolase; Validated 86.2
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 85.72
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 84.82
PRK08333184 L-fuculose phosphate aldolase; Provisional 84.78
PRK05874217 L-fuculose-phosphate aldolase; Validated 80.07
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
Probab=100.00  E-value=7.3e-63  Score=436.42  Aligned_cols=246  Identities=64%  Similarity=1.166  Sum_probs=208.2

Q ss_pred             CCCCcccEeeCCCcchHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHhhHhcCCCHHHHhhhccCCCCcCcccCcc
Q 024761           12 KAHTVLHCIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNEKHRGYTPLHD   91 (263)
Q Consensus        12 ~~~~~iPvIDls~~~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~GY~~~~~   91 (263)
                      +....||+|||++.++..++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++.....++||.+.+.
T Consensus        10 ~~~~~iP~IDl~~~~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~~~~~~~GY~~~~~   89 (332)
T PLN03002         10 MKVSSLNCIDLANDDLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVLRNEKHRGYTPVLD   89 (332)
T ss_pred             CCCCCCCEEeCCchhHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccCCCCCCcCcccc
Confidence            45668999999976666789999999999999999999999999999999999999999999999876666899998877


Q ss_pred             cccCCCCCCCCCcceehcccccCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Q 024761           92 ELLDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVARIIALALDLNAD  171 (263)
Q Consensus        92 e~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~  171 (263)
                      +..+.......|+||.|+++.+.+.+++.....++++|.||.++.+|+||+++++|+++|.+|+.+||++||++|||+++
T Consensus        90 e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~  169 (332)
T PLN03002         90 EKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVG  169 (332)
T ss_pred             cccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence            76543333347999999998765554443333456789999755578999999999999999999999999999999999


Q ss_pred             cccCCccccCCccceeeccCCCCCCCCCCCcceeccccccCceeEEEeCCCCceeEeeCCCCCCCCeEEcCCCCCeEEEE
Q 024761          172 FFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLCH  251 (263)
Q Consensus       172 ~f~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLqv~~~~g~~~~~W~~V~p~~g~lvVN  251 (263)
                      +|.+.+.++.+.+.||++|||+++... ...+|+++|||+|+||||+||+++||||+.+++..+++|++|+|+||++|||
T Consensus       170 ~f~~~~~~~~~~~~lrl~~YP~~~~~~-~~~~g~~~HTD~g~lTlL~qd~v~GLQV~~~~~~~~g~Wi~Vpp~pg~~VVN  248 (332)
T PLN03002        170 YFDRTEMLGKPIATMRLLRYQGISDPS-KGIYACGAHSDFGMMTLLATDGVMGLQICKDKNAMPQKWEYVPPIKGAFIVN  248 (332)
T ss_pred             HhccccccCCCchheeeeeCCCCCCcc-cCccccccccCCCeEEEEeeCCCCceEEecCCCCCCCcEEECCCCCCeEEEE
Confidence            998433556677899999999986542 3578999999999999999999999999875321234699999999999999


Q ss_pred             eCchhhh
Q 024761          252 FHFPALL  258 (263)
Q Consensus       252 vGd~l~~  258 (263)
                      |||+|+.
T Consensus       249 iGD~L~~  255 (332)
T PLN03002        249 LGDMLER  255 (332)
T ss_pred             HHHHHHH
Confidence            9999974

>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PRK08130 putative aldolase; Validated Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK08333 L-fuculose phosphate aldolase; Provisional Back     alignment and domain information
>PRK05874 L-fuculose-phosphate aldolase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 3e-10
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 8e-08
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 3e-07
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 4e-07
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-06
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-06
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-05
1w9y_A319 The Structure Of Acc Oxidase Length = 319 2e-04
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure 
Iteration: 1

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/234 (28%), Positives = 100/234 (42%), Gaps = 15/234 (6%)
Query: 19  CIDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVL 78
              L + D  +    L  +    GF  + ++ + Q  +D     +K FF LP+  K +  
Sbjct: 11  SFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYA 70
Query: 79  R-NEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDIL 137
                 RGY P   E        H D KE ++ G ++P G     +     NVWPA   +
Sbjct: 71  GVKGGARGYIPFGVETAK--GADHYDLKEFWHXGRDLPPG--HRFRAHXADNVWPAE--I 124
Query: 138 PGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTSD 197
           P ++  +   +         V   IA  L L  DFF KP +  +  + LRLLHY     D
Sbjct: 125 PAFKHDVSWLYNSLDGXGGKVLEAIATYLKLERDFF-KPTVQ-DGNSVLRLLHYPPIPKD 182
Query: 198 PSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLCH 251
            + G+  AGAH D   ITLL   E  GL++  D+D +   W  + P  G ++ +
Sbjct: 183 -ATGVR-AGAHGDINTITLLLGAEEGGLEVL-DRDGQ---WLPINPPPGCLVIN 230
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query263
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 1e-87
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 4e-76
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 5e-72
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 6e-69
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 2e-35
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 4e-35
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
 Score =  261 bits (670), Expect = 1e-87
 Identities = 62/235 (26%), Positives = 96/235 (40%), Gaps = 17/235 (7%)

Query: 19  CIDLS--SPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIK 76
            +  S  + D  +    L  +    GF  + ++ + Q  +D     +K FF LP+  K +
Sbjct: 9   PVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQ 68

Query: 77  VLR-NEKHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPD 135
                   RGY P   E        H D KE +++G ++P G     +     NVW  P 
Sbjct: 69  YAGVKGGARGYIPFGVETAKGAD--HYDLKEFWHMGRDLPPGHR--FRAHMADNVW--PA 122

Query: 136 ILPGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQT 195
            +P ++  +   +     +   V   IA  L L  DFF     + +  + LRLLHY    
Sbjct: 123 EIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLERDFFK--PTVQDGNSVLRLLHYPPIP 180

Query: 196 SDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLC 250
            D       AGAH D   ITLL   E  GL++  D+D +   W  + P  G ++ 
Sbjct: 181 KDA--TGVRAGAHGDINTITLLLGAEEGGLEVL-DRDGQ---WLPINPPPGCLVI 229
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query263
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
Probab=100.00  E-value=8.3e-61  Score=420.11  Aligned_cols=232  Identities=27%  Similarity=0.391  Sum_probs=199.1

Q ss_pred             CCCcccEeeCCCc--chHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHhhHhcCCCHHHHhhhccC-CCCcCcccC
Q 024761           13 AHTVLHCIDLSSP--DIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRN-EKHRGYTPL   89 (263)
Q Consensus        13 ~~~~iPvIDls~~--~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~-~~~~GY~~~   89 (263)
                      ++++||||||+..  ++.+++++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++... ..++||++.
T Consensus         3 ~~~~iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~Gy~~~   82 (312)
T 3oox_A            3 STSAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGYIPF   82 (312)
T ss_dssp             -CCSSCCEETHHHHHCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHHHHHHHHHHHTSCHHHHGGGBSSGGGTSEEECC
T ss_pred             CCCCCCeEEChHhcccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHCCCHHHHhhhccCCCCccccccc
Confidence            4678999999853  4567799999999999999999999999999999999999999999999998763 458999998


Q ss_pred             cccccCCCCCCCCCcceehcccccCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 024761           90 HDELLDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVARIIALALDLN  169 (263)
Q Consensus        90 ~~e~~~~~~~~~~d~~E~f~~~~~~~~~~~~~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll~~la~~Lgl~  169 (263)
                      +.+....  ....|++|.|+++.+.+.+++.  .....+|.||+  .+|+||+++++|+++|.+|+.+||++||++|||+
T Consensus        83 g~e~~~~--~~~~D~kE~~~~~~~~~~~~~~--~~~~~~n~wP~--~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~  156 (312)
T 3oox_A           83 GVETAKG--ADHYDLKEFWHMGRDLPPGHRF--RAHMADNVWPA--EIPAFKHDVSWLYNSLDGMGGKVLEAIATYLKLE  156 (312)
T ss_dssp             CCCCSTT--SCSCCCCEEEEECCCCCTTCGG--GGTSCCCCCCT--TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             cceecCC--CCCCCceeeeEeecCCCcCCcc--hhccCCCCCCC--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            8776432  2357999999998654433221  11346899997  4799999999999999999999999999999999


Q ss_pred             cccccCCccccCCccceeeccCCCCCCCCCCCcceeccccccCceeEEEeCCCCceeEeeCCCCCCCCeEEcCCCCCeEE
Q 024761          170 ADFFDKPEILGEPIATLRLLHYEGQTSDPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVL  249 (263)
Q Consensus       170 ~~~f~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLqv~~~~g~~~~~W~~V~p~~g~lv  249 (263)
                      +++|.  +.+..+.+.||++||||++.+. .. +|+++|||+|+||||+||+++||||+.++|    +|++|+|+||++|
T Consensus       157 ~~~f~--~~~~~~~~~lr~~~Ypp~~~~~-~~-~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g----~W~~V~p~pg~~v  228 (312)
T 3oox_A          157 RDFFK--PTVQDGNSVLRLLHYPPIPKDA-TG-VRAGAHGDINTITLLLGAEEGGLEVLDRDG----QWLPINPPPGCLV  228 (312)
T ss_dssp             TTTTH--HHHTTCCCEEEEEEECCCSSCC-C---CEEEECCCSSEEEEECCTTSCEEEECTTS----CEEECCCCSSCEE
T ss_pred             HHHHH--HHhcCCcceeeeEecCCCCCCc-CC-cCccceecCceEEEEeEcCcCceEEECCCC----cEEECCCCCCeEE
Confidence            99998  6777788899999999987653 33 999999999999999999999999998776    4999999999999


Q ss_pred             EEeCchhhh
Q 024761          250 CHFHFPALL  258 (263)
Q Consensus       250 VNvGd~l~~  258 (263)
                      |||||+|+.
T Consensus       229 VNiGD~l~~  237 (312)
T 3oox_A          229 INIGDMLER  237 (312)
T ss_dssp             EEECHHHHH
T ss_pred             EEhHHHHHH
Confidence            999999984
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 263
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 6e-30
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 6e-27
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 7e-26
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 1e-19
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Deacetoxycephalosporin C synthase
species: Streptomyces clavuligerus [TaxId: 1901]

 Score =  112 bits (280), Expect = 6e-30
 Identities = 30/236 (12%), Positives = 61/236 (25%), Gaps = 20/236 (8%)

Query: 20  IDLSSPDIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLR 79
             L+           ++   D G FY+ + G++   +         FF      + + + 
Sbjct: 8   FSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRAVT 67

Query: 80  NEKHR---GYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPESEKPFYGPNVWPAPDI 136
           +       G+T L  E     T                  G        Y          
Sbjct: 68  SPVPTMRRGFTGLESESTAQIT----------------NTGSYSDYSMCYSMGTADNLFP 111

Query: 137 LPGWRETMDRFHQEALEVAKVVARIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTS 196
              +     ++       ++ VAR +  A     D   +  +  EP+   R      +  
Sbjct: 112 SGDFERIWTQYFDRQYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHR 171

Query: 197 DPSKGIYGAGAHSDFGLITLLATDEVLGLQICKDKDAKPQIWEYVPPLKGLVLCHF 252
              +       H D  ++TL+         +    +     +  +P     VL   
Sbjct: 172 SAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAE-VGGAFTDLPYRPDAVLVFC 226
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query263
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d2csga1 417 Hypothetical protein YbiU {Salmonella typhimurium 87.28
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Isopenicillin N synthase
species: Emericella nidulans [TaxId: 162425]

Probab=100.00  E-value=1.5e-51  Score=362.11  Aligned_cols=238  Identities=19%  Similarity=0.263  Sum_probs=183.7

Q ss_pred             CCCCCcccEeeCCCc------chHHHHHHHHHHHHhcceEEEEcCCCCHHHHHHHHHHhhHhcCCCHHHHhhhccCC---
Q 024761           11 SKAHTVLHCIDLSSP------DIHQSVSLLKQACLDCGFFYVINHGISQEFMDEVFTQSKRFFNLPLNEKIKVLRNE---   81 (263)
Q Consensus        11 s~~~~~iPvIDls~~------~~~~~~~~l~~A~~~~GFf~l~nhgi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~---   81 (263)
                      |++.++||||||+..      .+.+++++|.+||+++|||||+||||+.+++.++++.  .||.+|.|+|+++....   
T Consensus         1 s~s~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHGI~~~~i~~~~~~--ff~~l~~eek~~~~~~~~~~   78 (329)
T d1odma_           1 SVSKANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQKTKE--FHMSITPEEKWDLAIRAYNK   78 (329)
T ss_dssp             CCCBCCCCEEECGGGGSSCHHHHHHHHHHHHHHHHTTSEEEEESCCCCHHHHHHHHHH--HHHHCCHHHHHHHBCTTTCT
T ss_pred             CCCCCCCCcEEchhhcCCCHHHHHHHHHHHHHHHHcCeEEEEEeCCCCHHHHHHHHHH--hcccCCHHHHHhhccccccc
Confidence            567789999999832      2356689999999999999999999999888777653  35789999999986542   


Q ss_pred             CCcCcccCcccccCCCCCCCCCcceehcccccCCCCCCC--CCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Q 024761           82 KHRGYTPLHDELLDPDTQVHGDYKEGYYIGVEVPEGDPE--SEKPFYGPNVWPAPDILPGWRETMDRFHQEALEVAKVVA  159 (263)
Q Consensus        82 ~~~GY~~~~~e~~~~~~~~~~d~~E~f~~~~~~~~~~~~--~~~~~~~~n~wP~~~~~~~f~~~~~~y~~~~~~l~~~ll  159 (263)
                      .++||.+.+....   ..+..+.++.+....+...+++.  ...+.+.+|.||.+..+|+||+.+++|+++|.+|+.+||
T Consensus        79 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~la~~ll  155 (329)
T d1odma_          79 EHQDQVRAGYYLS---IPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYWDVFGLSSALL  155 (329)
T ss_dssp             TCTTCSSSEEECC---BTTTBCCEEEEECCTTCCTTSHHHHTTCTTCCCCCCCCTTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCccccccccc---CCCccccceeeecccccccccccccccCCccccccCccccccchHHHHHHHHHHHhhhhheeeh
Confidence            2445544332221   12234666666666554433321  234567899999877789999999999999999999999


Q ss_pred             HHHHHhCCCCcccccCCccccCCccceeeccCCCCCC---C-----CCCCcceeccccccCceeEEEeCCCCceeEeeCC
Q 024761          160 RIIALALDLNADFFDKPEILGEPIATLRLLHYEGQTS---D-----PSKGIYGAGAHSDFGLITLLATDEVLGLQICKDK  231 (263)
Q Consensus       160 ~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~Yp~~~~---~-----~~~~~~g~~~HtD~g~lTlL~qd~~~GLqv~~~~  231 (263)
                      ++|+++||+++++|.......++.+.+|++|||+.+.   .     .+...+|+++|||+|+||||+||.++||||++++
T Consensus       156 ~~la~~Lgl~~~~f~~~~~~~~~~~~~~~l~y~~~~~~~~~~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLqv~~~~  235 (329)
T d1odma_         156 KGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAA  235 (329)
T ss_dssp             HHHHHHTTSCTTTTGGGCCTTTCCCEEEEEEECCCSSCCGGGCEECTTSCEEEEEEECCSSSEEEEEECSSCCEEEEETT
T ss_pred             hhhHhhcCccHHHHHHHhhccccchhhhccccccCCCCCchhccccccccccccccCCCccccceeecccceeeeeeccC
Confidence            9999999999999983222234666788877775432   1     1235789999999999999999999999999875


Q ss_pred             CCCCCCeEEcCCCCCeEEEEeCchhhh
Q 024761          232 DAKPQIWEYVPPLKGLVLCHFHFPALL  258 (263)
Q Consensus       232 g~~~~~W~~V~p~~g~lvVNvGd~l~~  258 (263)
                      |     |++|+|.||++|||+||+|+.
T Consensus       236 ~-----W~~v~~~~~~~vVN~Gd~l~~  257 (329)
T d1odma_         236 G-----YQDIEADDTGYLINCGSYMAH  257 (329)
T ss_dssp             E-----EEECCCCTTSEEEEECHHHHH
T ss_pred             C-----ceeeccccceEEEehhhhHHH
Confidence            3     999999999999999999984
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure