Citrus Sinensis ID: 024762

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260---
Protein Sequence
MVTGNNSHQEDGDRQQPAAKGGGATRSWGTTVSGQSVSTSGSVGSPSQSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQVDIRQLFSCIMASIIT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccEEEEEEccccEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEccEEEEEccccEEEEEEEEcccc
Coil and Loop (DISEMBL)
mvtgnnshqedgdrqqpaakgggatrswgttvsgqsvstsgsvgspsqsmatpasdstflrlnhldihgddagsqgavvggkkkkrgqragggdksgrgLRQFSMKVCEKVESKGRTTYNEVADELVAefadpsnslatpdqqqydeknIRRRVYDALNVLMAMDIISKDKkeiqwkglprtslndIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRnerlyssgnapsggvalPFILVQVDIRQLFSCIMASIIT
Flexible Loop (DISEMBL)
mvtgnnshqedgdrqqpaakgggatrswgttvsgqsvstsgsvgspsqSMATPASDSTFLRLNHLDIHGddagsqgavvggkkkkrgqragggdksgrglrqfSMKVCEKVESKGRTTYNEVADELVAEfadpsnslatpdqqqydeknIRRRVYDALNVLMAMDIISKdkkeiqwkglprtslndieeLKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQVDIRQLFSCIMASIIT
Low Complexity Region (SEG)
MVTGNNSHQEDGDRQQPAAKGGGATRswgttvsgqsvstsgsvgspsqsMATPASDSTFLRLNHLDIHGDDAGSqgavvggkkkkrgqragggDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQVDIRQLFSCIMASIIT
Disordered region (IsUnstruct)
****************************************************************************************************************************************************NIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQVDIRQLFSCIMASI**
Disordered Region (DISOPRED)
******************************************************************************************************FSMKVCEKVESKGRTTYNEVADELVA*********************IRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTS**********************AYLQELEDQFVGLQNLI******************LPFILVQVDIRQLFSCIMASI**
Disordered Region (DISEMBL)
******************************************************SDSTFLRLNHLDIHGDDA*************************RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQVDIRQLFSCIMASIIT
Disordered Region (DISPRO)
*************************************************************************************************RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQVDIRQLFSCIMASI**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVTGNNSHQEDGDRQQPAAKGGGATRSWGTTVSGQSVSTSGSVGSPSQSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYSSGNAPSGGVALPFILVQVDIRQLFSCIMASIIT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	263	2.2.26 [Sep-21-2011]
Q9FNY2	385	Transcription factor-like	yes	no	0.851	0.581	0.826	1e-102
Q14186	410	Transcription factor Dp-1	yes	no	0.642	0.412	0.526	1e-44
Q17QZ4	410	Transcription factor Dp-1	yes	no	0.642	0.412	0.526	4e-44
Q08639	410	Transcription factor Dp-1	yes	no	0.642	0.412	0.520	7e-44
Q14188	446	Transcription factor Dp-2	no	no	0.806	0.475	0.445	9e-42
Q9FNY3	292	Transcription factor-like	no	no	0.627	0.565	0.465	3e-41
Q24318	445	Transcription factor Dp O	yes	no	0.623	0.368	0.502	3e-38
Q5H9I0	405	Transcription factor Dp f	no	no	0.642	0.417	0.433	6e-32
Q22703	598	Transcription factor dpl-	yes	no	0.612	0.269	0.451	6e-32
Q64163	446	Transcription factor Dp-2	no	no	0.806	0.475	0.395	1e-31

>sp|Q9FNY2|DPB_ARATH Transcription factor-like protein DPB OS=Arabidopsis thaliana GN=DPB PE=1 SV=1

 Score =  370 bits (950), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 191/231 (82%), Positives = 204/231 (88%), Gaps = 7/231 (3%)

Query: 24  ATRSWGTTVSGQSVSTSGSVGSPSQ------SMATPASDSTFLRLNHLDIHGDDAGSQGA 77
           +TRSWGT VSGQSVSTSGS+GSPS       ++ T  SD+TF RLN+LDI GDDAGSQGA
Sbjct: 23  STRSWGTAVSGQSVSTSGSMGSPSSRSEQTITVVTSTSDTTFQRLNNLDIQGDDAGSQGA 82

Query: 78  VVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSL 137
             G KKKKRGQRA G DK+GRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFA P+N  
Sbjct: 83  -SGVKKKKRGQRAAGPDKTGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFALPNNDG 141

Query: 138 ATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGL 197
            +PDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW+GLPRTSL+DIEELK ERL L
Sbjct: 142 TSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLSDIEELKNERLSL 201

Query: 198 RNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQV 248
           RNRIEKKTAY QELE+Q+VGLQNLIQRNE LYSSGNAPSGGVALPFILVQ 
Sbjct: 202 RNRIEKKTAYSQELEEQYVGLQNLIQRNEHLYSSGNAPSGGVALPFILVQT 252

Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin.
Arabidopsis thaliana (taxid: 3702)

>sp|Q14186|TFDP1_HUMAN Transcription factor Dp-1 OS=Homo sapiens GN=TFDP1 PE=1 SV=1

 Score =  180 bits (456), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 120/173 (69%), Gaps = 4/173 (2%)

Query: 87  GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYD 146
           G+R   G+K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P++  YD
Sbjct: 103 GKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHI-LPNESAYD 161

Query: 147 EKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTA 206
           +KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K +
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQS 221

Query: 207 YLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQVDIRQLFSC 256
            LQEL  Q +  +NL+QRN   E+  S    P+  + LPFI+V    + +  C
Sbjct: 222 QLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDC 274

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q17QZ4|TFDP1_BOVIN Transcription factor Dp-1 OS=Bos taurus GN=TFDP1 PE=2 SV=1

 Score =  178 bits (451), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/173 (52%), Positives = 120/173 (69%), Gaps = 4/173 (2%)

Query: 87  GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYD 146
           G+R   G+K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+  ++S   P +  YD
Sbjct: 103 GKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSA-ADSHILPSESAYD 161

Query: 147 EKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTA 206
           +KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K +
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQSLEVERQRRLERIKQKQS 221

Query: 207 YLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQVDIRQLFSC 256
            LQEL  Q +  +NL+QRN   E+  S    P+  + LPFI+V    + +  C
Sbjct: 222 QLQELILQQIAFKNLVQRNRQVEQQASRPPPPNSVIHLPFIIVNTSKKTVIDC 274

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.

Bos taurus (taxid: 9913)

>sp|Q08639|TFDP1_MOUSE Transcription factor Dp-1 OS=Mus musculus GN=Tfdp1 PE=1 SV=1

 Score =  177 bits (449), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 119/173 (68%), Gaps = 4/173 (2%)

Query: 87  GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYD 146
           G+R   G+K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P++  YD
Sbjct: 103 GKRNRKGEKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHI-LPNESAYD 161

Query: 147 EKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTA 206
           +KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K +
Sbjct: 162 QKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQS 221

Query: 207 YLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQVDIRQLFSC 256
            LQEL  Q +  +NL+QRN   E+       P+  + LPFI+V    + +  C
Sbjct: 222 QLQELILQQIAFKNLVQRNRQAEQQARRPPPPNSVIHLPFIIVNTSRKTVIDC 274

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.

Mus musculus (taxid: 10090)

>sp|Q14188|TFDP2_HUMAN Transcription factor Dp-2 OS=Homo sapiens GN=TFDP2 PE=1 SV=2

 Score =  170 bits (431), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 107/240 (44%), Positives = 146/240 (60%), Gaps = 28/240 (11%)

Query: 35  QSVSTSGSV--GSPSQSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKR------ 86
           Q +++SGSV  GSP     TPA     +   H+      A + G V G +K+ R      
Sbjct: 68  QRLTSSGSVLIGSP----YTPAP--AMVTQTHI------AEATGWVPGDRKRARKFIDSD 115

Query: 87  ---GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQ 143
               +R+  GDK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA     
Sbjct: 116 FSESKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA--DS 173

Query: 144 QYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEK 203
            YD+KNIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ E+     RI++
Sbjct: 174 AYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQ 233

Query: 204 KTAYLQELEDQFVGLQNLIQRNERLYSSGNAP---SGGVALPFILVQVDIRQLFSCIMAS 260
           K A LQEL  Q +  +NL+QRN +       P   +  + LPFI++    + +  C ++S
Sbjct: 234 KRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISS 293

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q9FNY3|DPA_ARATH Transcription factor-like protein DPA OS=Arabidopsis thaliana GN=DPA PE=1 SV=1

 Score =  168 bits (426), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 122/172 (70%), Gaps = 7/172 (4%)

Query: 79  VGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLA 138
           +G +KK + + +GGG      LRQFS+ VC+K+E+K  TTY EVADE++++FA    +  
Sbjct: 39  IGSEKKGQSRTSGGG------LRQFSVMVCQKLEAKKITTYKEVADEIISDFATIKQNAE 92

Query: 139 TP-DQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGL 197
            P ++ +Y+EKNIRRRVYDALNV MA+DII++DKKEI+WKGLP T   D+EE+K +R  +
Sbjct: 93  KPLNENEYNEKNIRRRVYDALNVFMALDIIARDKKEIRWKGLPITCKKDVEEVKMDRNKV 152

Query: 198 RNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQVD 249
            + ++KK A+L+EL ++   L++L+ RN+ +      P+ G  LPFIL++ +
Sbjct: 153 MSSVQKKAAFLKELREKVSSLESLMSRNQEMVVKTQGPAEGFTLPFILLETN 204

Involved in the regulation of the G1/S transition. Increases the DNA binding and the transactivation activities of E2F proteins after heterodimerization. The complex DPA/E2FA promotes cell division and acts as a regulator of the endocycle. Positively regulates the activity of S phase-specic genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q24318|TFDP_DROME Transcription factor Dp OS=Drosophila melanogaster GN=Dp PE=1 SV=2

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/171 (50%), Positives = 110/171 (64%), Gaps = 7/171 (4%)

Query: 88  QRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDE 147
           QR    DK+G+GLR FSMKVCEKVE KG+TTYNEVAD+LV+E  +  N+         D+
Sbjct: 158 QRKRKPDKAGKGLRHFSMKVCEKVEEKGKTTYNEVADDLVSE--EMKNNAY---DNNCDQ 212

Query: 148 KNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAY 207
           KNIRRRVYDALNVLMA+++ISKDKKEI+W GLP  S      L+ E    R RI++K   
Sbjct: 213 KNIRRRVYDALNVLMAINVISKDKKEIRWIGLPANSTETFLALEEENCQRRERIKQKNEM 272

Query: 208 LQELEDQFVGLQNLIQRNERLYSSGNAPS--GGVALPFILVQVDIRQLFSC 256
           L+E+  Q V  + L++RN+R  S G  PS    + LPFI+V        +C
Sbjct: 273 LREMIMQHVAFKGLVERNKRNESQGVVPSPNASIQLPFIIVNTHKSTKINC 323

Component of the DREAM complex, a multiprotein complex that can both act as a transcription activator or repressor depending on the context. In follicle cells, the complex plays a central role in the site-specific DNA replication at the chorion loci. During development, the complex represses transcription of developmentally controlled E2F target genes. Can stimulate E2F-dependent transcription.

Drosophila melanogaster (taxid: 7227)

>sp|Q5H9I0|TFDP3_HUMAN Transcription factor Dp family member 3 OS=Homo sapiens GN=TFDP3 PE=1 SV=1

 Score =  137 bits (346), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 75/173 (43%), Positives = 108/173 (62%), Gaps = 4/173 (2%)

Query: 87  GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYD 146
           GQ    G+K+G GL + SMKV E V+ KG T+  EV  ELVA+F   SN  A+P++  YD
Sbjct: 98  GQHNRKGEKNGMGLCRLSMKVWETVQRKGTTSCQEVVGELVAKFRAASNH-ASPNESAYD 156

Query: 147 EKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTA 206
            KNI+RR YDALNVLMAM+IIS++KK+I+W GL   S  + + L+ ER     RI++K +
Sbjct: 157 VKNIKRRTYDALNVLMAMNIISREKKKIKWIGLTTNSAQNCQNLRVERQKRLERIKQKQS 216

Query: 207 YLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQVDIRQLFSC 256
            LQ+L  Q +  +NL+ RN   E   S    P+  + +PFI++    + + +C
Sbjct: 217 ELQQLILQQIAFKNLVLRNQYVEEQVSQRPLPNSVIHVPFIIISSSKKTVINC 269

Competitive inhibitor of E2F-mediated transactivation activity. Impairs E2F-mediated cell-cycle progression from G(1) to S phase.

Homo sapiens (taxid: 9606)

>sp|Q22703|TFDP1_CAEEL Transcription factor dpl-1 OS=Caenorhabditis elegans GN=dpl-1 PE=1 SV=2

 Score =  137 bits (346), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 104/166 (62%), Gaps = 5/166 (3%)

Query: 99  GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPD--QQQYDEKNIRRRVYD 156
           GLR FS KVCEKV+ KG T YNEVADELVA++   +N +   D  +Q+YD KNIRRRVYD
Sbjct: 72  GLRHFSTKVCEKVKEKGLTNYNEVADELVADYFQ-NNLIKQIDVVKQEYDMKNIRRRVYD 130

Query: 157 ALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFV 216
           ALNVL+AM+II+K KK+I+W GLP ++  +I  L+ E+      I  K   L+E+  Q V
Sbjct: 131 ALNVLLAMNIITKSKKDIRWIGLPASASQEISRLEEEKSRREASISSKKQALEEMVLQIV 190

Query: 217 GLQNLIQRNERLYSSGNAPSGG--VALPFILVQVDIRQLFSCIMAS 260
             +NL++RN +       P     + LPF+++  D      C ++S
Sbjct: 191 SYKNLVERNRKNEHKNGRPENDTVLHLPFLIINTDKEANVECSVSS 236

Synthetic multivulva class B (synMuvB) protein. SynMuvB proteins are required to repress the induction of vulval development by Ras signaling and probably act by forming the multiprotein DRM complex that repress transcription. Can stimulate E2F-dependent transcription.

Caenorhabditis elegans (taxid: 6239)

>sp|Q64163|TFDP2_MOUSE Transcription factor Dp-2 OS=Mus musculus GN=Tfdp2 PE=1 SV=2

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/240 (39%), Positives = 135/240 (56%), Gaps = 28/240 (11%)

Query: 35  QSVSTSGSV--GSPSQSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKR------ 86
           Q ++ SGSV  G+P     TPA     +   H+      A + G V   +K+ R      
Sbjct: 68  QRIANSGSVLIGNP----YTPAP--AMVTQTHI------AEAAGWVPSDRKRAREFIDSD 115

Query: 87  ---GQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQ 143
               +R+  GDK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA     
Sbjct: 116 FSESKRSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA--DS 173

Query: 144 QYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEK 203
            YD++NIRRRVYDALNVLMAM+IIS      +   +   S  + + L+ E+     RI++
Sbjct: 174 AYDQENIRRRVYDALNVLMAMNIISSLPTGKKRNQVDCNSAQECQNLEIEKQRRIERIKQ 233

Query: 204 KTAYLQELEDQFVGLQNLIQRNERLYSSGNAP---SGGVALPFILVQVDIRQLFSCIMAS 260
           K A LQEL  Q +  +NL+QRN +       P   +  + LPFI++    + +  C ++S
Sbjct: 234 KRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPAVNSTIQLPFIIINTSRKTVIDCSISS 293

Can stimulate E2F-dependent transcription. Binds DNA cooperatively with E2F family members through the E2 recognition site, 5'-TTTC[CG]CGC-3', found in the promoter region of a number of genes whose products are involved in cell cycle regulation or in DNA replication. The DP2/E2F complex functions in the control of cell-cycle progression from G1 to S phase. The E2F-1/DP complex appears to mediate both cell proliferation and apoptosis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
225440073	349	PREDICTED: transcription factor-like pro	0.931	0.702	0.857	1e-113
356538615	337	PREDICTED: transcription factor-like pro	0.828	0.646	0.875	1e-109
356497355	338	PREDICTED: transcription factor-like pro	0.832	0.647	0.870	1e-108
297806297	389	hypothetical protein ARALYDRAFT_487116 [	0.939	0.634	0.789	1e-108
449438797	347	PREDICTED: transcription factor-like pro	0.882	0.668	0.811	1e-102
449476464	348	PREDICTED: transcription factor-like pro	0.882	0.666	0.808	1e-100
30680032	385	Transcription factor DP [Arabidopsis tha	0.851	0.581	0.826	1e-100
224138754	355	transcription factor DP, E2 dimerization	0.923	0.684	0.790	7e-98
33338106	353	transcription factor DP1 [Populus tremul	0.923	0.688	0.785	8e-97
224068777	299	transcription factor DP, E2 dimerization	0.749	0.658	0.873	2e-95

>gi|225440073|ref|XP_002282450.1| PREDICTED: transcription factor-like protein DPB [Vitis vinifera] gi|297741646|emb|CBI32778.3| unnamed protein product [Vitis vinifera]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/252 (85%), Positives = 228/252 (90%), Gaps = 7/252 (2%)

Query: 1   MVTGNNSHQEDGDRQQPAAKGGGATRSWGTTVSGQSVSTSGSVGSPSQ----SMATPASD 56
           MVTG  SHQEDG++       GGATRSWGTTVSGQSVSTSGSVGSPS     ++ATPAS+
Sbjct: 1   MVTGG-SHQEDGEKNPATVSKGGATRSWGTTVSGQSVSTSGSVGSPSSRSEAALATPASE 59

Query: 57  STFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGR 116
           +TFLRLNHLDIHGDDAGSQGA    +KKKRGQRA GGDKSGRGLRQFSMKVCEKVESKGR
Sbjct: 60  NTFLRLNHLDIHGDDAGSQGAA--NRKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGR 117

Query: 117 TTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 176
           TTYNEVADELVAEFADPSNSL +PDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW
Sbjct: 118 TTYNEVADELVAEFADPSNSLTSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW 177

Query: 177 KGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPS 236
           KGLPRTSLNDIEELK +R+GLR RIEKK AYLQELE+QFVGLQNLIQRNE+LYSSGNAPS
Sbjct: 178 KGLPRTSLNDIEELKTDRIGLRGRIEKKAAYLQELEEQFVGLQNLIQRNEQLYSSGNAPS 237

Query: 237 GGVALPFILVQV 248
           GGVALPFILVQ 
Sbjct: 238 GGVALPFILVQT 249

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538615|ref|XP_003537797.1| PREDICTED: transcription factor-like protein DPB-like [Glycine max]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/224 (87%), Positives = 209/224 (93%), Gaps = 6/224 (2%)

Query: 29  GTTVSGQSVSTSGSVGSPS----QSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKK 84
           GTT+SGQS+STS SVGSPS    Q+MATPASDSTFLRLNHLDIHGDDAGSQG V   KKK
Sbjct: 21  GTTMSGQSMSTSRSVGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGTV--AKKK 78

Query: 85  KRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQ 144
           KRGQRA GGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADP N ++TPDQQQ
Sbjct: 79  KRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINGVSTPDQQQ 138

Query: 145 YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKK 204
           YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSL+DIEELK+ERLGLRNRIEKK
Sbjct: 139 YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDIEELKSERLGLRNRIEKK 198

Query: 205 TAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQV 248
            AYLQELE+Q++GLQ LIQRNE+LYSSGNAP+GGV+LPFILVQ 
Sbjct: 199 AAYLQELEEQYIGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQT 242

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497355|ref|XP_003517526.1| PREDICTED: transcription factor-like protein DPB-like [Glycine max]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/224 (87%), Positives = 210/224 (93%), Gaps = 5/224 (2%)

Query: 29  GTTVSGQSVSTSGSVGSPS----QSMATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKK 84
           GTT+SGQS+STS S+GSPS    Q+MATPASDSTFLRLNHLDIHGDDAGSQGAV   KKK
Sbjct: 21  GTTISGQSMSTSRSLGSPSSRSEQTMATPASDSTFLRLNHLDIHGDDAGSQGAV-ASKKK 79

Query: 85  KRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQ 144
           KRGQRA GGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADP N ++TPDQQQ
Sbjct: 80  KRGQRAIGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINGVSTPDQQQ 139

Query: 145 YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKK 204
           YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSL+D+EELK+ERLGLRNRIEKK
Sbjct: 140 YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLSDMEELKSERLGLRNRIEKK 199

Query: 205 TAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQV 248
            AYLQELE+Q++GLQ LIQRNE+LYSSGNAP+GGV+LPFILVQ 
Sbjct: 200 AAYLQELEEQYIGLQKLIQRNEQLYSSGNAPNGGVSLPFILVQT 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806297|ref|XP_002871032.1| hypothetical protein ARALYDRAFT_487116 [Arabidopsis lyrata subsp. lyrata] gi|297316869|gb|EFH47291.1| hypothetical protein ARALYDRAFT_487116 [Arabidopsis lyrata subsp. lyrata]

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/257 (78%), Positives = 218/257 (84%), Gaps = 10/257 (3%)

Query: 1   MVTGNNS---HQEDGDRQQPAAKGGGATRSWGTTVSGQSVSTSGSVGSPSQ------SMA 51
           M TG+NS   H +DG  +        +TRSWGT VSGQSVSTSGS+GSPS       ++A
Sbjct: 1   MTTGSNSNHNHHDDGSGRSNNNNNNPSTRSWGTAVSGQSVSTSGSMGSPSSRSEQTITVA 60

Query: 52  TPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKV 111
           T ASDSTFLR+N+LDI GDDAGSQGA  G KKKKRGQRA G DKSGRGLRQFSMKVCEKV
Sbjct: 61  TSASDSTFLRMNNLDIQGDDAGSQGAS-GIKKKKRGQRAAGPDKSGRGLRQFSMKVCEKV 119

Query: 112 ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171
           ESKGRTTYNEVADELVAEFA P+N   +PDQQQYDEKNIRRRVYDALNVLMAMDIISKDK
Sbjct: 120 ESKGRTTYNEVADELVAEFALPNNDGTSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 179

Query: 172 KEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSS 231
           KEIQW+GLPRTSL+DIEELK ERL LRNRIEKKTAY QELE+Q+VGLQNLIQRNE LYSS
Sbjct: 180 KEIQWRGLPRTSLSDIEELKNERLSLRNRIEKKTAYSQELEEQYVGLQNLIQRNEHLYSS 239

Query: 232 GNAPSGGVALPFILVQV 248
           GNAPSGGVALPFILVQ 
Sbjct: 240 GNAPSGGVALPFILVQT 256

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438797|ref|XP_004137174.1| PREDICTED: transcription factor-like protein DPB-like [Cucumis sativus]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 198/244 (81%), Positives = 214/244 (87%), Gaps = 12/244 (4%)

Query: 9   QEDGDRQQPAAKGGGATRSWGTTVSGQSVSTSGSVGSPS----QSMATPASDSTFLRLNH 64
           +ED D   P+  G        TT+SGQSVS SGSVGSPS    Q+MATPASD+TFLRLN+
Sbjct: 10  REDDDDDLPSGPGA-------TTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNN 62

Query: 65  LDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVAD 124
           LDIHGD+AGSQG      KKKRGQRA GGDKSGRGLRQFSMKVCEKVESKGRTTYNEVAD
Sbjct: 63  LDIHGDEAGSQGPT-ANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVAD 121

Query: 125 ELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSL 184
           ELVAEFADP NS+A+PDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTS+
Sbjct: 122 ELVAEFADPGNSVASPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSV 181

Query: 185 NDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFI 244
           NDIEELKAERLGLRNRIEKK AYLQELE+Q+VGLQNLIQRNE+L++S NAPSGGV+LPFI
Sbjct: 182 NDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFNSENAPSGGVSLPFI 241

Query: 245 LVQV 248
           LVQ 
Sbjct: 242 LVQT 245

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476464|ref|XP_004154744.1| PREDICTED: transcription factor-like protein DPB-like [Cucumis sativus]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/245 (80%), Positives = 214/245 (87%), Gaps = 13/245 (5%)

Query: 9   QEDGDRQQPAAKGGGATRSWGTTVSGQSVSTSGSVGSPS----QSMATPASDSTFLRLNH 64
           +ED D   P+  G        TT+SGQSVS SGSVGSPS    Q+MATPASD+TFLRLN+
Sbjct: 10  REDDDDDLPSGPGA-------TTISGQSVSMSGSVGSPSSRSEQTMATPASDNTFLRLNN 62

Query: 65  LDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVAD 124
           LDIHGD+AGSQG      KKKRGQRA GGDKSGRGLRQFSMKVCEKVESKGRTTYNEVAD
Sbjct: 63  LDIHGDEAGSQGPT-ANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVAD 121

Query: 125 ELVAEFADPSNSLATPDQQQ-YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTS 183
           ELVAEFADP NS+A+PDQQQ YDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTS
Sbjct: 122 ELVAEFADPGNSVASPDQQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTS 181

Query: 184 LNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPF 243
           +NDIEELKAERLGLRNRIEKK AYLQELE+Q+VGLQNLIQRNE+L++S NAPSGGV+LPF
Sbjct: 182 VNDIEELKAERLGLRNRIEKKAAYLQELEEQYVGLQNLIQRNEQLFNSENAPSGGVSLPF 241

Query: 244 ILVQV 248
           ILVQ 
Sbjct: 242 ILVQT 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30680032|ref|NP_850757.1| Transcription factor DP [Arabidopsis thaliana] gi|75309250|sp|Q9FNY2.1|DPB_ARATH RecName: Full=Transcription factor-like protein DPB; AltName: Full=DP-like protein B; Short=AtDPbB; AltName: Full=E2F dimerization partner protein B gi|11125653|emb|CAC15484.1| DP-like protein [Arabidopsis thaliana] gi|110736268|dbj|BAF00104.1| transcription factor - like protein [Arabidopsis thaliana] gi|225898881|dbj|BAH30571.1| hypothetical protein [Arabidopsis thaliana] gi|332003216|gb|AED90599.1| Transcription factor DP [Arabidopsis thaliana]

 Score =  370 bits (950), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/231 (82%), Positives = 204/231 (88%), Gaps = 7/231 (3%)

Query: 24  ATRSWGTTVSGQSVSTSGSVGSPSQ------SMATPASDSTFLRLNHLDIHGDDAGSQGA 77
           +TRSWGT VSGQSVSTSGS+GSPS       ++ T  SD+TF RLN+LDI GDDAGSQGA
Sbjct: 23  STRSWGTAVSGQSVSTSGSMGSPSSRSEQTITVVTSTSDTTFQRLNNLDIQGDDAGSQGA 82

Query: 78  VVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSL 137
             G KKKKRGQRA G DK+GRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFA P+N  
Sbjct: 83  -SGVKKKKRGQRAAGPDKTGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFALPNNDG 141

Query: 138 ATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGL 197
            +PDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW+GLPRTSL+DIEELK ERL L
Sbjct: 142 TSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRTSLSDIEELKNERLSL 201

Query: 198 RNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQV 248
           RNRIEKKTAY QELE+Q+VGLQNLIQRNE LYSSGNAPSGGVALPFILVQ 
Sbjct: 202 RNRIEKKTAYSQELEEQYVGLQNLIQRNEHLYSSGNAPSGGVALPFILVQT 252

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138754|ref|XP_002322893.1| transcription factor DP, E2 dimerization partner protein [Populus trichocarpa] gi|222867523|gb|EEF04654.1| transcription factor DP, E2 dimerization partner protein [Populus trichocarpa]

 Score =  362 bits (930), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 204/258 (79%), Positives = 216/258 (83%), Gaps = 15/258 (5%)

Query: 1   MVTGNNSHQEDGDRQQPAAKGGGATR-----SWGTTVSGQSVSTSGSVGSPS----QSMA 51
           MVTG   H EDGDR   +A   G        SW   VSGQSVSTSGSVGSPS     +MA
Sbjct: 1   MVTGG-GHLEDGDRHPSSAATRGGGGGATTGSW---VSGQSVSTSGSVGSPSSRSEHAMA 56

Query: 52  TPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGG-DKSGRGLRQFSMKVCEK 110
           TPASD+TFLRLNHLDIH D   +       KKKKRGQRA GG DKSGRGLRQFSMKVCEK
Sbjct: 57  TPASDNTFLRLNHLDIHAD-DAATQDAAANKKKKRGQRAAGGADKSGRGLRQFSMKVCEK 115

Query: 111 VESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD 170
           VESKG TTYNEVADELVAEFADPSNS++TPDQQQYDEKNIRRRVYDALNVLMA+DIISKD
Sbjct: 116 VESKGTTTYNEVADELVAEFADPSNSVSTPDQQQYDEKNIRRRVYDALNVLMALDIISKD 175

Query: 171 KKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYS 230
           KKEIQWKGLPRTSL+DIEELKAERLGLRNRIEKK AYLQELE+QF+GLQNLIQRNE+LYS
Sbjct: 176 KKEIQWKGLPRTSLSDIEELKAERLGLRNRIEKKAAYLQELEEQFMGLQNLIQRNEQLYS 235

Query: 231 SGNAPSGGVALPFILVQV 248
           SGNAPSGGV+LPFILVQ 
Sbjct: 236 SGNAPSGGVSLPFILVQT 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33338106|gb|AAQ13675.1|AF181998_1 transcription factor DP1 [Populus tremula x Populus tremuloides] gi|32187097|gb|AAP73785.1| DP1 [Populus tremula x Populus tremuloides]

 Score =  359 bits (921), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 202/257 (78%), Positives = 214/257 (83%), Gaps = 14/257 (5%)

Query: 1   MVTGNNSHQEDGDRQ-----QPAAKGGGATRSWGTTVSGQSVSTSGSVGSPS----QSMA 51
           MV G  +H EDGDR      +    GG  T SW   VSGQSVSTSGSVGSPS     +MA
Sbjct: 1   MVAGG-AHLEDGDRHPSSASRRGGGGGATTGSW---VSGQSVSTSGSVGSPSSRSEHAMA 56

Query: 52  TPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCEKV 111
           TPASDSTFLRLNHLDIH D   +       KKKKRGQRA G DKSGRGLRQFS+KVCEKV
Sbjct: 57  TPASDSTFLRLNHLDIHAD-DAATQDAAANKKKKRGQRAVGADKSGRGLRQFSIKVCEKV 115

Query: 112 ESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDK 171
           ESKG TTYNEVADELVAEFADPSNS++TPDQQQYDEKNIRRRVYDALNVLMA+DIISKDK
Sbjct: 116 ESKGTTTYNEVADELVAEFADPSNSVSTPDQQQYDEKNIRRRVYDALNVLMALDIISKDK 175

Query: 172 KEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSS 231
           KEIQWKGLPRTSL+DIEELK ERLGLRNR EKK AYLQELE+QFVGLQNLIQRNE+LYSS
Sbjct: 176 KEIQWKGLPRTSLSDIEELKVERLGLRNRFEKKAAYLQELEEQFVGLQNLIQRNEQLYSS 235

Query: 232 GNAPSGGVALPFILVQV 248
           GNAPSGGV+LPFILVQ 
Sbjct: 236 GNAPSGGVSLPFILVQT 252

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068777|ref|XP_002326197.1| transcription factor DP, E2 dimerization partner protein [Populus trichocarpa] gi|222833390|gb|EEE71867.1| transcription factor DP, E2 dimerization partner protein [Populus trichocarpa]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 173/198 (87%), Positives = 182/198 (91%), Gaps = 1/198 (0%)

Query: 50  MATPASDSTFLRLNHLDIHGDDAGSQGAVVGGKKKKRGQRAGGGDKSGRGLRQFSMKVCE 109
           MATPASDSTFLRLNHLDIH D   +       KKKKRGQRA G DKSGRGLRQFS+KVCE
Sbjct: 1   MATPASDSTFLRLNHLDIHAD-DAATQDAAANKKKKRGQRAVGADKSGRGLRQFSIKVCE 59

Query: 110 KVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK 169
           KVESKG TTYNEVADELVAEFADPSNS++TPDQQQYDEKNIRRRVYDALNVLMA+DIISK
Sbjct: 60  KVESKGTTTYNEVADELVAEFADPSNSVSTPDQQQYDEKNIRRRVYDALNVLMALDIISK 119

Query: 170 DKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLY 229
           DKKEIQWKGLPRTSL+DIEELK ERLGLRNRIEKK AYLQELE+QFVGLQNLIQRNE+LY
Sbjct: 120 DKKEIQWKGLPRTSLSDIEELKVERLGLRNRIEKKAAYLQELEEQFVGLQNLIQRNEQLY 179

Query: 230 SSGNAPSGGVALPFILVQ 247
           SSGNAPSGGV+LPFILVQ
Sbjct: 180 SSGNAPSGGVSLPFILVQ 197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	263
TAIR|locus:1005716177	385	DPB [Arabidopsis thaliana (tax	0.927	0.633	0.653	4.8e-78
UNIPROTKB|F1Q0Q6	447	TFDP2 "Uncharacterized protein	0.631	0.371	0.523	7.5e-41
UNIPROTKB|C9J872	248	TFDP2 "Transcription factor Dp	0.631	0.669	0.523	7.5e-41
UNIPROTKB|F8W6Z7	370	TFDP2 "Transcription factor Dp	0.631	0.448	0.523	7.5e-41
ZFIN|ZDB-GENE-030219-104	414	tfdp2 "transcription factor Dp	0.631	0.400	0.545	1.6e-40
UNIPROTKB|F1P3E8	411	TFDP1 "Uncharacterized protein	0.631	0.403	0.523	2e-40
UNIPROTKB|C9J977	206	TFDP2 "Transcription factor Dp	0.615	0.786	0.530	2e-40
UNIPROTKB|F1RN38	448	F1RN38 "Uncharacterized protei	0.631	0.370	0.523	5.3e-40
UNIPROTKB|F1Q0W2	415	TFDP1 "Uncharacterized protein	0.631	0.4	0.517	8.7e-40
UNIPROTKB|B4DLQ9	311	TFDP1 "Transcription factor Dp	0.631	0.533	0.517	8.7e-40

TAIR|locus:1005716177 DPB [Arabidopsis thaliana (taxid:3702)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 160/245 (65%), Positives = 177/245 (72%)

Query:     3 TGNNSHQEDGDRQQPAAKGGGATRXXXXXXXXXXXXXXXXXXXXXXXMATPASDSTFLRL 62
             + +N H+ + +   P+ +  G                          + T  SD+TF RL
Sbjct:     8 SNHNHHESNNNNNNPSTRSWGTAVSGQSVSTSGSMGSPSSRSEQTITVVTSTSDTTFQRL 67

Query:    63 NHLDIHGDDAGSXXXXXXXXXXXXXXXXXXXDKSGRGLRQFSMKVCEKVESKGRTTYNEV 122
             N+LDI GDDAGS                   DK+GRGLRQFSMKVCEKVESKGRTTYNEV
Sbjct:    68 NNLDIQGDDAGSQGASGVKKKKRGQRAAGP-DKTGRGLRQFSMKVCEKVESKGRTTYNEV 126

Query:   123 ADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRT 182
             ADELVAEFA P+N   +PDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW+GLPRT
Sbjct:   127 ADELVAEFALPNNDGTSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWRGLPRT 186

Query:   183 SLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALP 242
             SL+DIEELK ERL LRNRIEKKTAY QELE+Q+VGLQNLIQRNE LYSSGNAPSGGVALP
Sbjct:   187 SLSDIEELKNERLSLRNRIEKKTAYSQELEEQYVGLQNLIQRNEHLYSSGNAPSGGVALP 246

Query:   243 FILVQ 247
             FILVQ
Sbjct:   247 FILVQ 251

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0042023 "DNA endoreduplication" evidence=RCA;IMP

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0051302 "regulation of cell division" evidence=RCA

UNIPROTKB|F1Q0Q6 TFDP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 89/170 (52%), Positives = 118/170 (69%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             DK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA  D Q YD+KNIRRR
Sbjct:   126 DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA-DSQAYDQKNIRRR 184

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ E+     RI++K A LQEL  
Sbjct:   185 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLL 244

Query:   214 QFVGLQNLIQRNERLYSSGNAP---SGGVALPFILVQVDIRQLFSCIMAS 260
             Q +  +NL+QRN +       P   +  + LPFI++    + +  C ++S
Sbjct:   245 QQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISS 294

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|C9J872 TFDP2 "Transcription factor Dp-2" [Homo sapiens (taxid:9606)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 89/170 (52%), Positives = 118/170 (69%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             DK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA  D Q YD+KNIRRR
Sbjct:    65 DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA-DSQAYDQKNIRRR 123

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ E+     RI++K A LQEL  
Sbjct:   124 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLL 183

Query:   214 QFVGLQNLIQRNERLYSSGNAP---SGGVALPFILVQVDIRQLFSCIMAS 260
             Q +  +NL+QRN +       P   +  + LPFI++    + +  C ++S
Sbjct:   184 QQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISS 233

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F8W6Z7 TFDP2 "Transcription factor Dp-2" [Homo sapiens (taxid:9606)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 89/170 (52%), Positives = 118/170 (69%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             DK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA  D Q YD+KNIRRR
Sbjct:    49 DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA-DSQAYDQKNIRRR 107

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ E+     RI++K A LQEL  
Sbjct:   108 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLL 167

Query:   214 QFVGLQNLIQRNERLYSSGNAP---SGGVALPFILVQVDIRQLFSCIMAS 260
             Q +  +NL+QRN +       P   +  + LPFI++    + +  C ++S
Sbjct:   168 QQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISS 217

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-030219-104 tfdp2 "transcription factor Dp-2" [Danio rerio (taxid:7955)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 95/174 (54%), Positives = 121/174 (69%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             DK+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF   S SL   D Q YD+KNIRRR
Sbjct:   134 DKNGKGLRHFSMKVCEKVQKKGTTSYNEVADELVAEFTHAS-SLMPADSQVYDQKNIRRR 192

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEK---KTAYLQE 210
             VYDALNVLMAM+IISK+KKEI+W GLP  S  +   L   +L  + R+E+   K A L+E
Sbjct:   193 VYDALNVLMAMNIISKEKKEIRWIGLPTNSAQECRNLLIFQLEKQKRLERIRQKRAQLEE 252

Query:   211 LE-DQFVGLQNLIQRNERLYSSGNA--PSGGVA-LPFILVQVDIRQLFSCIMAS 260
             L   Q V  +NL+QRN+   +S  +  P+G V  LPFI++  D+R +  C ++S
Sbjct:   253 LILQQQVAFKNLVQRNQASEASSRSSPPAGSVIQLPFIILNTDVRTVIDCSISS 306

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1P3E8 TFDP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 89/170 (52%), Positives = 118/170 (69%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             +KSG GLR FSMKVCEKV+ KG T+YNEVADELVAEF  P + ++ P++  YD+KNIRRR
Sbjct:   110 EKSGTGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFTTPDDHIS-PNESAYDQKNIRRR 168

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ E+     RI++K + LQEL  
Sbjct:   169 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVEKQRRLERIKQKQSQLQELIL 228

Query:   214 QFVGLQNLIQRNERLYSSGNAP--SGGVA-LPFILVQVDIRQLFSCIMAS 260
             Q +  +NL+QRN +     N P  S  V  LPFI+V    + +  C +++
Sbjct:   229 QQIAFKNLVQRNRQAEQQANRPPPSNSVIHLPFIIVNTSKKTVIDCSISN 278

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0000084 "S phase of mitotic cell cycle" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|C9J977 TFDP2 "Transcription factor Dp-2" [Homo sapiens (taxid:9606)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 88/166 (53%), Positives = 115/166 (69%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             DK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA  D Q YD+KNIRRR
Sbjct:    39 DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA-DSQAYDQKNIRRR 97

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ E+     RI++K A LQEL  
Sbjct:    98 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLL 157

Query:   214 QFVGLQNLIQRNERLYSSGNAP---SGGVALPFILVQVDIRQLFSC 256
             Q +  +NL+QRN +       P   +  + LPFI++    + +  C
Sbjct:   158 QQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDC 203

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1RN38 F1RN38 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 89/170 (52%), Positives = 118/170 (69%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             +K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P +  YD+KNIRRR
Sbjct:   128 EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHIL-PSESAYDQKNIRRR 186

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K + LQEL  
Sbjct:   187 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELIL 246

Query:   214 QFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQVDIRQLFSCIMAS 260
             Q +  +NL+QRN   E+  S    P+  + LPFI+V    R +  C +++
Sbjct:   247 QQIAFKNLVQRNRQAEQQASRPPPPNSVIHLPFIIVNTSKRTVIDCSISN 296

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0008544 "epidermis development" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000084 "S phase of mitotic cell cycle" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1Q0W2 TFDP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 88/170 (51%), Positives = 119/170 (70%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             +K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P++  YD+KNIRRR
Sbjct:   115 EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHIL-PNESAYDQKNIRRR 173

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K + LQEL  
Sbjct:   174 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELIL 233

Query:   214 QFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQVDIRQLFSCIMAS 260
             Q +  +NL+QRN   E+  S    P+  + LPFI+V    + +  C +++
Sbjct:   234 QQIAFKNLVQRNRQAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISN 283

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

UNIPROTKB|B4DLQ9 TFDP1 "Transcription factor Dp-1" [Homo sapiens (taxid:9606)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 88/170 (51%), Positives = 119/170 (70%)

Query:    94 DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
             +K+G+GLR FSMKVCEKV+ KG T+YNEVADELVAEF+   N +  P++  YD+KNIRRR
Sbjct:    15 EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAADNHIL-PNESAYDQKNIRRR 73

Query:   154 VYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELED 213
             VYDALNVLMAM+IISK+KKEI+W GLP  S  + + L+ ER     RI++K + LQEL  
Sbjct:    74 VYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELIL 133

Query:   214 QFVGLQNLIQRN---ERLYSSGNAPSGGVALPFILVQVDIRQLFSCIMAS 260
             Q +  +NL+QRN   E+  S    P+  + LPFI+V    + +  C +++
Sbjct:   134 QQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISN 183

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FNY2	DPB_ARATH	No assigned EC number	0.8268	0.8517	0.5818	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	263
pfam08781	141	pfam08781, DP, Transcription factor DP	2e-28
pfam02319	67	pfam02319, E2F_TDP, E2F/DP family winged-helix DNA	3e-19

>gnl|CDD|192151 pfam08781, DP, Transcription factor DP

 Score =  105 bits (263), Expect = 2e-28
 Identities = 36/65 (55%), Positives = 44/65 (67%)

Query: 185 NDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFI 244
            +IE+L+ ER     RIE+K A LQEL  Q V L+NL+QRN+ L SSGN PS G+ LPFI
Sbjct: 1   QEIEKLEEERQKRIERIEQKQAQLQELILQQVALKNLVQRNQELESSGNVPSSGIQLPFI 60

Query: 245 LVQVD 249
           LV   
Sbjct: 61  LVNTS 65

DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression. The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer and negatively regulates the G1-S transition. Length = 141

>gnl|CDD|202203 pfam02319, E2F_TDP, E2F/DP family winged-helix DNA-binding domain

 Score = 78.8 bits (195), Expect = 3e-19
 Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 25/88 (28%)

Query: 95  KSGRGLRQFSMK---VCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIR 151
           +  + L   + K   +CEK    G T  NE A EL                   D K  +
Sbjct: 1   RKEKSLGLLTQKFLKLCEKSP-DGITDLNEAAKEL-------------------DVK-QK 39

Query: 152 RRVYDALNVLMAMDIISK-DKKEIQWKG 178
           RR+YD  NVL  + +I K  K EI+W G
Sbjct: 40  RRIYDITNVLEGIGLIEKKSKNEIRWIG 67

This family contains the transcription factor E2F and its dimerisation partners TDP1 and TDP2, which stimulate E2F-dependent transcription. E2F binds to DNA as a homodimer or as a heterodimer in association with TDP1/2, the heterodimer having increased binding efficiency. The crystal structure of an E2F4-DP2-DNA complex shows that the DNA-binding domains of the E2F and DP proteins both have a fold related to the winged-helix DNA-binding motif. Recognition of the central c/gGCGCg/c sequence of the consensus DNA-binding site is symmetric, and amino acids that contact these bases are conserved among all known E2F and DP proteins. Length = 67

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	263
KOG2829	326	consensus E2F-like protein [Transcription]	100.0
PF08781	142	DP: Transcription factor DP; InterPro: IPR014889 D	99.91
KOG2577	354	consensus Transcription factor E2F/dimerization pa	99.74
PF02319	71	E2F_TDP: E2F/DP family winged-helix DNA-binding do	99.73
KOG2578	388	consensus Transcription factor E2F/dimerization pa	98.84
KOG2578	388	consensus Transcription factor E2F/dimerization pa	96.12
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	93.95
COG1378	247	Predicted transcriptional regulators [Transcriptio	93.0
PF05402	68	PqqD: Coenzyme PQQ synthesis protein D (PqqD); Int	91.07

>KOG2829 consensus E2F-like protein [Transcription]

Probab=100.00  E-value=5e-62  Score=449.10  Aligned_cols=169  Identities=59%  Similarity=0.895  Sum_probs=161.5

Q ss_pred             CCCcCCcchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCC-CCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762           92 GGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNS-LATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD  170 (263)
Q Consensus        92 ~~~k~~kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~-~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~  170 (263)
                      .++++++|||||||+|||||++||.||||||||+||++|..+++. ...++++.||+|||||||||||||||||+||+|+
T Consensus        38 ks~k~g~gLRhfs~kVCeKve~Kg~TtYneVADelVaef~~~n~~~~i~~n~~~yd~KNIRRRVYDALNVlmAmnIIsKd  117 (326)
T KOG2829|consen   38 KSDKAGGGLRHFSMKVCEKVERKGTTTYNEVADELVAEFAGANNYSHICPNEQEYDQKNIRRRVYDALNVLMAMNIISKD  117 (326)
T ss_pred             CCCCCCcchhhhhHHHHHHHHhcCCccHHHHHHHHHHHHhccccccccCccccccchHHHHHHHHHHHHHHHHHHHHhcc
Confidence            367899999999999999999999999999999999999988762 4467889999999999999999999999999999


Q ss_pred             CCeeeeccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccceEEEEcCC
Q 024762          171 KKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQVDI  250 (263)
Q Consensus       171 Kk~I~W~G~~~~s~~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alknLI~RNk~~~~~~~~ps~~I~LPFIlV~T~~  250 (263)
                      ||+|+|+|+|.++.+++++|++|+.+++++|++|+++||||++|+++|++||+||+.++.++.+|...|+||||||+|++
T Consensus       118 KKEIrW~GLP~~ss~dv~~le~Er~k~~erI~kK~a~lqEl~~q~~~fknLV~RN~~~e~~~~~P~~~i~LPFiiinT~k  197 (326)
T KOG2829|consen  118 KKEIRWIGLPATSSQDVSELEEERKKRMERIKKKAAQLQELIEQVSAFKNLVQRNRHAESQGQPPSENIHLPFIIINTSK  197 (326)
T ss_pred             cceeeeeccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCcccccceEEEecCC
Confidence            99999999999999999999999999999999999999999999999999999999999988888888999999999999


Q ss_pred             CceEEeEeee
Q 024762          251 RQLFSCIMAS  260 (263)
Q Consensus       251 ~tvI~C~iss  260 (263)
                      +|+|+|+|++
T Consensus       198 ~a~Ieceise  207 (326)
T KOG2829|consen  198 KAVIECEISE  207 (326)
T ss_pred             CceEEEEecc
Confidence            9999999986

>PF08781 DP: Transcription factor DP; InterPro: IPR014889 DP forms a heterodimer with E2F and regulates genes involved in cell cycle progression

Probab=99.91  E-value=3e-24  Score=181.73  Aligned_cols=76  Identities=46%  Similarity=0.698  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccceEEEEcCCCceEEeEeee
Q 024762          185 NDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQVDIRQLFSCIMAS  260 (263)
Q Consensus       185 ~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alknLI~RNk~~~~~~~~ps~~I~LPFIlV~T~~~tvI~C~iss  260 (263)
                      ++|++|++|+.++++||++|+++||||+.|+++|+|||+||+++++++.+|+++|+||||||+|+++|+|+|+||.
T Consensus         1 q~~~~Le~ek~~~~~rI~~K~~~LqEL~~Q~va~knLv~RN~~~~~~~~~p~~~i~LPFIlV~T~~~a~I~ceiS~   76 (142)
T PF08781_consen    1 QECEELEEEKQRRRERIKKKKEQLQELILQQVAFKNLVQRNRQLEQSGNAPSSGIQLPFILVNTSKKAVIECEISE   76 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS--GEEESS-EEEEEESS--EEEEE-T
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeeecCEEEEEecCCcEEEEEEcC
Confidence            5799999999999999999999999999999999999999999999888888999999999999999999999985

The transcriptional activity of E2F is inhibited by the retinoblastoma protein which binds to the E2F-DP heterodimer [] and negatively regulates the G1-S transition. ; PDB: 2AZE_A.

>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]

Probab=99.74  E-value=7.5e-18  Score=159.84  Aligned_cols=69  Identities=32%  Similarity=0.494  Sum_probs=62.0

Q ss_pred             CcCCcchhhHHHHHHHHHHhc--CCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc-c
Q 024762           94 DKSGRGLRQFSMKVCEKVESK--GRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-D  170 (263)
Q Consensus        94 ~k~~kGLR~fS~KVcekVk~k--g~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~  170 (263)
                      -+..+.|-.+.+|+.++|++.  |....|++|+.|                     ++.|||||||||||||||||+| +
T Consensus        67 ~R~d~SLglLTkKFv~Llq~s~dGvldLn~aA~~L---------------------~VqKRRIYDITNVLEGI~LIeKks  125 (354)
T KOG2577|consen   67 TRSDTSLGLLTKKFVDLLQESPDGVLDLNKAAEVL---------------------NVQKRRIYDITNVLEGIGLIEKKS  125 (354)
T ss_pred             ccchhhHHHHHHHHHHHHHhCCCceeeHHHHHHHh---------------------ccccceeeehhhhhhcccceeecc
Confidence            345678999999999999984  599999999997                     2779999999999999999999 9


Q ss_pred             CCeeeeccCCCCC
Q 024762          171 KKEIQWKGLPRTS  183 (263)
Q Consensus       171 Kk~I~W~G~~~~s  183 (263)
                      ||+|+|+|.+.+.
T Consensus       126 KN~IqW~G~~~~~  138 (354)
T KOG2577|consen  126 KNNIQWIGGDFNS  138 (354)
T ss_pred             ccceeeecCCCcc
Confidence            9999999988764

>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle

Probab=99.73  E-value=1.4e-18  Score=130.46  Aligned_cols=67  Identities=36%  Similarity=0.644  Sum_probs=57.2

Q ss_pred             CCcchhhHHHHHHHHHHh--cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc-cCC
Q 024762           96 SGRGLRQFSMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKK  172 (263)
Q Consensus        96 ~~kGLR~fS~KVcekVk~--kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk  172 (263)
                      ..+||.+++.++.+.+..  .+.+++++||++|+.+                +.|+.|||||||+|||+|+|||+| .|+
T Consensus         2 ~~~sL~~lt~~fi~~~~~~~~~~i~l~~ia~~l~~~----------------~~k~~~RRlYDI~NVLealgli~K~~k~   65 (71)
T PF02319_consen    2 KEKSLKLLTQRFIQLFESSPDKSISLNEIADKLISE----------------NVKTQRRRLYDIINVLEALGLIEKQSKN   65 (71)
T ss_dssp             TTTHHHHHHHHHHHHHHHCCCTEEEHHHHHHHCHHH----------------CCHHHCHHHHHHHHHHHHCTSEEEEETT
T ss_pred             CcCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHccc----------------ccccccchhhHHHHHHHHhCceeecCCC
Confidence            458999999995555543  4899999999999988                367899999999999999999999 999


Q ss_pred             eeeecc
Q 024762          173 EIQWKG  178 (263)
Q Consensus       173 ~I~W~G  178 (263)
                      .|+|.|
T Consensus        66 ~~~W~G   71 (71)
T PF02319_consen   66 SYKWIG   71 (71)
T ss_dssp             EEEE--
T ss_pred             ceEecC
Confidence            999998

Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.

>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription]

Probab=98.84  E-value=2.6e-09  Score=101.18  Aligned_cols=56  Identities=30%  Similarity=0.513  Sum_probs=44.2

Q ss_pred             CCCCCccccccccchhhhhhHHHHhhhcccccc-cCCeeeeccCCCCChhHHHHHHHH
Q 024762          137 LATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKGLPRTSLNDIEELKAE  193 (263)
Q Consensus       137 ~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk~I~W~G~~~~s~~~~~~Lk~E  193 (263)
                      +...++.+...-+-|||||||.||||+||++.| .||.|+|+|+.... ..+.+|++|
T Consensus        44 lvgLddaA~KlgVErRRIYDiVNvlEsig~var~~KnqYsWkGf~aiP-ral~eLqeE  100 (388)
T KOG2578|consen   44 LVGLDDAARKLGVERRRIYDIVNVLESIGAVARRGKNQYSWKGFGAIP-RALFELQEE  100 (388)
T ss_pred             eechhhHHHhcCchHHHHHHHHHHHHHHHHHHhcccCcccccchhhhh-HHHHHHHHH
Confidence            344556666677889999999999999999999 99999999996442 245566665

>KOG2578 consensus Transcription factor E2F/dimerization partner (TDP)-like proteins [Transcription]

Probab=96.12  E-value=0.0027  Score=61.10  Aligned_cols=72  Identities=24%  Similarity=0.375  Sum_probs=47.6

Q ss_pred             cchhhHHHHHHHHHHh---cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc----
Q 024762           98 RGLRQFSMKVCEKVES---KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD----  170 (263)
Q Consensus        98 kGLR~fS~KVcekVk~---kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~----  170 (263)
                      +.|-.+...+....-.   ....|+...|.-|+.+-.+++           ..-.-=||+|||-|||-+|+||+|.    
T Consensus       159 kSL~lL~qnFvklflcs~~~~lvslD~Aak~Ll~ds~~~~-----------~mRtkvRRLYDIANVlssm~LIeKtH~l~  227 (388)
T KOG2578|consen  159 KSLWLLAQNFVKLFLCSDDDILVSLDSAAKALLKDSEDEP-----------PMRTKVRRLYDIANVLSSMNLIEKTHYLF  227 (388)
T ss_pred             hHHHHHHHHHHHheeccccceEEeecHHHHHHhcCCCCCc-----------cHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence            6777777765544433   225677666777765522211           1112349999999999999999992    


Q ss_pred             --CCeeeeccCC
Q 024762          171 --KKEIQWKGLP  180 (263)
Q Consensus       171 --Kk~I~W~G~~  180 (263)
                        |--++|.|..
T Consensus       228 trkPafrwlG~~  239 (388)
T KOG2578|consen  228 TRKPAFRWLGSK  239 (388)
T ss_pred             cccchhheeCCC
Confidence              6678998864

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=93.95  E-value=0.086  Score=38.21  Aligned_cols=59  Identities=27%  Similarity=0.374  Sum_probs=48.9

Q ss_pred             cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc-cCCeeee
Q 024762           98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQW  176 (263)
Q Consensus        98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk~I~W  176 (263)
                      -||...=.+|+..+-..+..|-.|||+++=                     .-|..||++|+-|+..|+|++ ..+...|
T Consensus         4 ~gLs~~E~~vy~~Ll~~~~~t~~eIa~~l~---------------------i~~~~v~~~L~~L~~~GlV~~~~~~~~~Y   62 (68)
T PF01978_consen    4 LGLSENEAKVYLALLKNGPATAEEIAEELG---------------------ISRSTVYRALKSLEEKGLVEREEGRPKVY   62 (68)
T ss_dssp             HCHHHHHHHHHHHHHHHCHEEHHHHHHHHT---------------------SSHHHHHHHHHHHHHTTSEEEEEECCEEE
T ss_pred             CCcCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEEEcCceEEE
Confidence            477778889999998999999999999861                     447899999999999999999 5555555


Q ss_pred             c
Q 024762          177 K  177 (263)
Q Consensus       177 ~  177 (263)
                      .
T Consensus        63 ~   63 (68)
T PF01978_consen   63 R   63 (68)
T ss_dssp             E
T ss_pred             E
Confidence            4

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>COG1378 Predicted transcriptional regulators [Transcription]

Probab=93.00  E-value=0.54  Score=43.15  Aligned_cols=34  Identities=21%  Similarity=0.438  Sum_probs=28.0

Q ss_pred             cchhhhhhHHHHhhhcccccc-cCCeeeeccCCCC
Q 024762          149 NIRRRVYDALNVLMAMDIISK-DKKEIQWKGLPRT  182 (263)
Q Consensus       149 niKRRVYDalNVL~ai~lI~K-~Kk~I~W~G~~~~  182 (263)
                      .-+=||||+|+.|+.-|+|+. .++--.++-.|+.
T Consensus        42 vP~~kvY~vl~sLe~kG~v~~~~g~P~~y~av~p~   76 (247)
T COG1378          42 VPRPKVYDVLRSLEKKGLVEVIEGRPKKYRAVPPE   76 (247)
T ss_pred             CCchhHHHHHHHHHHCCCEEeeCCCCceEEeCCHH
Confidence            557899999999999999999 7777777766543

>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences

Probab=91.07  E-value=0.43  Score=34.25  Aligned_cols=55  Identities=24%  Similarity=0.323  Sum_probs=39.8

Q ss_pred             chhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccc
Q 024762           99 GLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIIS  168 (263)
Q Consensus        99 GLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~  168 (263)
                      .|-..+..|++.+  .|..|..||++.|..+|..             +...++..|...++-|...|||+
T Consensus        14 ~Ln~~a~~Iw~~~--~g~~t~~ei~~~l~~~y~~-------------~~~~~~~dv~~fl~~L~~~glIe   68 (68)
T PF05402_consen   14 TLNETAAFIWELL--DGPRTVEEIVDALAEEYDV-------------DPEEAEEDVEEFLEQLREKGLIE   68 (68)
T ss_dssp             ---THHHHHHHH----SSS-HHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHTT---
T ss_pred             cccHHHHHHHHHc--cCCCCHHHHHHHHHHHcCC-------------CHHHHHHHHHHHHHHHHHCcCcC
Confidence            7888899999999  4779999999999999844             23467999999999999999985

This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	263
1cf7_B	95	Structural Basis Of Dna Recognition By The Heterodi		4e-32
2aze_A	155	Structure Of The Rb C-Terminal Domain Bound To An E		2e-04

>pdb|1CF7|B Chain B, Structural Basis Of Dna Recognition By The Heterodimeric Cell Cycle Transcription Factor E2f-Dp Length = 95

Iteration: 1
 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/90 (71%), Positives = 75/90 (83%), Gaps = 2/90 (2%)
Query: 94  DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRR 153
           DK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N LA      YD+KNIRRR
Sbjct: 6   DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHLAA--DSAYDQKNIRRR 63
Query: 154 VYDALNVLMAMDIISKDKKEIQWKGLPRTS 183
           VYDALNVLMAM+IISK+KKEI+W GLP  S
Sbjct: 64  VYDALNVLMAMNIISKEKKEIKWIGLPTNS 93

>pdb|2AZE|A Chain A, Structure Of The Rb C-Terminal Domain Bound To An E2f1-Dp1 Heterodimer Length = 155

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALP 242
           + + L+ ER     RI++K + LQEL  Q +  +NL+QRN   E+  S    P+  + LP
Sbjct: 6   ECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLP 65
Query: 243 FILVQVDIRQLFSC 256
           FI+V    + +  C
Sbjct: 66  FIIVNTSKKTVIDC 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	263
1cf7_B	95	Protein (transcription factor DP-2); E2F, winged-h	6e-43
2aze_A	155	Transcription factor DP-1; coiled coil, beta sandw	2e-21
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	4e-04

>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17 Length = 95

 Score =  140 bits (354), Expect = 6e-43
 Identities = 65/95 (68%), Positives = 77/95 (81%), Gaps = 2/95 (2%)

Query: 89  RAGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEK 148
           R+  GDK+G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N L       YD+K
Sbjct: 1   RSKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHL--AADSAYDQK 58

Query: 149 NIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTS 183
           NIRRRVYDALNVLMAM+IISK+KKEI+W GLP  S
Sbjct: 59  NIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNS 93

>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1 Length = 155

 Score = 86.6 bits (214), Expect = 2e-21
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)

Query: 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALP 242
           + + L+ ER     RI++K + LQEL  Q +  +NL+QRN   E+  S    P+  + LP
Sbjct: 6   ECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLP 65

Query: 243 FILVQVD 249
           FI+V   
Sbjct: 66  FIIVNTS 72

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 44.8 bits (105), Expect = 7e-06
 Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 16/94 (17%)

Query: 137 LATPDQQQYDEKNIR--RRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAER 194
           +A  D+   + ++IR  R        L  +D  SK  ++ +W+   +    D+EE    +
Sbjct: 74  IAQADRLTQEPESIRKWREEQRKR--LQELDAASKVMEQ-EWREKAK---KDLEEWNQRQ 127

Query: 195 LGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERL 228
                ++EK     +  +  F       Q +  +
Sbjct: 128 ---SEQVEKNKINNRIADKAFYQ-----QPDADI 153

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 4e-05
 Identities = 32/182 (17%), Positives = 70/182 (38%), Gaps = 35/182 (19%)

Query: 94  DKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPS----------NSLATPDQQ 143
            K    +++F       VE   R  Y  +   +  E   PS          + L   D Q
Sbjct: 73  SKQEEMVQKF-------VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN-DNQ 124

Query: 144 QYDEKNI-RRRVYDAL-NVLMAMDIISKDKKEIQWKGLP---RTSLNDIEELKAERLGLR 198
            + + N+ R + Y  L   L+ +    +  K +   G+    +T +  ++   + ++  +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLEL----RPAKNVLIDGVLGSGKTWVA-LDVCLSYKV--Q 177

Query: 199 NRIEKKTAYL-----QELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQVDIRQL 253
            +++ K  +L        E     LQ L+ + +  ++S +  S  + L    +Q ++R+L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 254 FS 255
             
Sbjct: 238 LK 239

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 38.8 bits (89), Expect = 4e-04
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 31/60 (51%)

Query: 202 EKKTAYLQELEDQFVGLQNLIQRNERLYSSGNAPSGGVALPFILVQVDIRQLFSCIMASI 261
           EK+   L++L+              +LY+  +AP    AL               I A++
Sbjct: 18  EKQA--LKKLQASL-----------KLYADDSAP----AL--------------AIKATM 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	263
1cf7_B	95	Protein (transcription factor DP-2); E2F, winged-h	100.0
2aze_A	155	Transcription factor DP-1; coiled coil, beta sandw	99.9
1cf7_A	76	Protein (transcription factor E2F-4); E2F, winged-	99.69
1sfx_A	109	Conserved hypothetical protein AF2008; structural	87.91
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	81.3
3r0a_A	123	Putative transcriptional regulator; structural gen	80.06

>1cf7_B Protein (transcription factor DP-2); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17

Probab=100.00  E-value=7.5e-38  Score=247.95  Aligned_cols=93  Identities=69%  Similarity=1.100  Sum_probs=78.5

Q ss_pred             CCCCCcCCcchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762           90 AGGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK  169 (263)
Q Consensus        90 a~~~~k~~kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K  169 (263)
                      ..++|++++|||||||+|||||+++++|||+||||+||+||..++++.  +.+++||++|+|||||||||||+|||||+|
T Consensus         2 ~~~~~k~~~GLr~fS~kVcekVk~k~~Tty~eVAdeLV~e~~~~~~~~--~~~~~~d~~~~rRRvYD~~NVl~a~gii~K   79 (95)
T 1cf7_B            2 SKKGDKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHL--AADSAYDQKNIRRRVYDALNVLMAMNIISK   79 (95)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCC--GGGSHHHHHHHHHHHHHHHHHHHHTTSBCC
T ss_pred             CccccccCccHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccccC--ccchhcccccchhhHHHHHHHHHHhcceec
Confidence            356799999999999999999999999999999999999999887654  567899999999999999999999999999


Q ss_pred             cCCeeeeccCCCCCh
Q 024762          170 DKKEIQWKGLPRTSL  184 (263)
Q Consensus       170 ~Kk~I~W~G~~~~s~  184 (263)
                      +||.|+|+|+|.++.
T Consensus        80 ~k~~i~W~g~~~~~~   94 (95)
T 1cf7_B           80 EKKEIKWIGLPTNSA   94 (95)
T ss_dssp             CSSCEEBCCCC----
T ss_pred             CCCEEEEecCCcccc
Confidence            999999999998764

>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1

Probab=99.90  E-value=3.4e-24  Score=182.34  Aligned_cols=79  Identities=29%  Similarity=0.476  Sum_probs=73.1

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---CCCCCccccceEEEEcCCCceEEeEe
Q 024762          182 TSLNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSSG---NAPSGGVALPFILVQVDIRQLFSCIM  258 (263)
Q Consensus       182 ~s~~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alknLI~RNk~~~~~~---~~ps~~I~LPFIlV~T~~~tvI~C~i  258 (263)
                      ++.++|+.|++|+.++++||++|+++||||+.|+++|+||++||+++++++   ++|+++|+||||||+|+++|+|||+|
T Consensus         2 ~s~qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafknLv~RN~~~e~~~~~~~~~~~~I~LPFIlV~T~k~t~I~ceI   81 (155)
T 2aze_A            2 EFAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSI   81 (155)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCGGGEEESSCEEEEEESSCCEEEEE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCEeecCEEEEEcCCCCEEEEEE
Confidence            578999999999999999999999999999999999999999999998643   45678999999999999999999999


Q ss_pred             ee
Q 024762          259 AS  260 (263)
Q Consensus       259 ss  260 (263)
                      |.
T Consensus        82 Se   83 (155)
T 2aze_A           82 SN   83 (155)
T ss_dssp             CT
T ss_pred             ec
Confidence            85

>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17

Probab=99.69  E-value=1.4e-17  Score=126.60  Aligned_cols=65  Identities=32%  Similarity=0.548  Sum_probs=55.9

Q ss_pred             CCcchhhHHHHHHHHHHh--cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc-cCC
Q 024762           96 SGRGLRQFSMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKK  172 (263)
Q Consensus        96 ~~kGLR~fS~KVcekVk~--kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk  172 (263)
                      ..++|..++.++++.+++  .+.++++++|++|.-                    +.|||||||+|||||||||+| .||
T Consensus         8 ~~~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L~v--------------------~~kRRiYDI~NVLe~igli~K~~k~   67 (76)
T 1cf7_A            8 HEKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLAV--------------------RQKRRIYDITNVLEGIGLIEKKSKN   67 (76)
T ss_dssp             TTTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTTT--------------------CCTHHHHHHHHHHHHHTSEEEEETT
T ss_pred             ccCcHHHHHHHHHHHHHhCCCCcCcHHHHHHHhCC--------------------ccceehhhHHHHHhHhcceeecCCC
Confidence            347999999999999998  568999999999731                    269999999999999999999 899


Q ss_pred             eeeeccCC
Q 024762          173 EIQWKGLP  180 (263)
Q Consensus       173 ~I~W~G~~  180 (263)
                      .|+|+|++
T Consensus        68 ~~~W~G~~   75 (76)
T 1cf7_A           68 SIQWKGVG   75 (76)
T ss_dssp             EEEEC---
T ss_pred             cEEEeCCC
Confidence            99999985

>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50

Probab=87.91  E-value=2.2  Score=30.42  Aligned_cols=52  Identities=21%  Similarity=0.319  Sum_probs=42.2

Q ss_pred             cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762           98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD  170 (263)
Q Consensus        98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~  170 (263)
                      -||-.--..|+..+...+..|..|+|+.+-                     .-+-.||.+++.|+.-|+|.+.
T Consensus        16 ~~l~~~~~~il~~l~~~~~~s~~ela~~l~---------------------is~~tv~~~l~~L~~~glv~~~   67 (109)
T 1sfx_A           16 LSFKPSDVRIYSLLLERGGMRVSEIARELD---------------------LSARFVRDRLKVLLKRGFVRRE   67 (109)
T ss_dssp             TCCCHHHHHHHHHHHHHCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred             cCCCHHHHHHHHHHHHcCCCCHHHHHHHHC---------------------CCHHHHHHHHHHHHHCCCEEEE
Confidence            355556677888888888899999999871                     2357899999999999999983

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=81.30  E-value=2.4  Score=31.61  Aligned_cols=55  Identities=18%  Similarity=0.248  Sum_probs=42.8

Q ss_pred             HHHHHHHHHhcC---CCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc-cCCeeeeccC
Q 024762          104 SMKVCEKVESKG---RTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKGL  179 (263)
Q Consensus       104 S~KVcekVk~kg---~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk~I~W~G~  179 (263)
                      -.+|++.+++.+   .+|+.|+|.+|=                     .-|+-|...|.-|+.-|+|.+ .++.=.|.-.
T Consensus        12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lg---------------------vsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~   70 (81)
T 1qbj_A           12 EQRILKFLEELGEGKATTAHDLSGKLG---------------------TPKKEINRVLYSLAKKGKLQKEAGTPPLWKIA   70 (81)
T ss_dssp             HHHHHHHHHHHCTTCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEecCCCCCeeEEe
Confidence            467999999999   999999999972                     235667777778999999998 5555667533

>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}

Probab=80.06  E-value=7.2  Score=30.05  Aligned_cols=52  Identities=12%  Similarity=0.134  Sum_probs=42.4

Q ss_pred             cchhhHHHHHHHHHHhcCC--CcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc
Q 024762           98 RGLRQFSMKVCEKVESKGR--TTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD  170 (263)
Q Consensus        98 kGLR~fS~KVcekVk~kg~--TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~  170 (263)
                      -||-..-..|+..+.+.+.  .|-.|||+.|-                     .-+-.||-+|+.|+..|+|.+.
T Consensus        22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~---------------------~s~sTV~r~L~~L~~~GlV~r~   75 (123)
T 3r0a_A           22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSLK---------------------LDVSTVQRSVKKLHEKEILQRS   75 (123)
T ss_dssp             HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHHT---------------------SCHHHHHHHHHHHHHTTSEEEE
T ss_pred             cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHC---------------------cCHHHHHHHHHHHHHCCCEEee
Confidence            4666667788888887776  89999999872                     2367899999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	263
d1cf7b_	82	a.4.5.17 (B:) Cell cycle transcription factor DP-2	1e-47
d2azea1	148	e.63.1.1 (A:199-346) Transcription factor DP-1 {Hu	6e-22
d1cf7a_	67	a.4.5.17 (A:) Cell cycle transcription factor E2F-	7e-04

>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor DP-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  150 bits (382), Expect = 1e-47
 Identities = 59/84 (70%), Positives = 69/84 (82%), Gaps = 2/84 (2%)

Query: 97  GRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYD 156
           G+GLR FSMKVCEKV+ KG T+YNEVADELV+EF + +N         YD+KNIRRRVYD
Sbjct: 1   GKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNH--LAADSAYDQKNIRRRVYD 58

Query: 157 ALNVLMAMDIISKDKKEIQWKGLP 180
           ALNVLMAM+IISK+KKEI+W GLP
Sbjct: 59  ALNVLMAMNIISKEKKEIKWIGLP 82

>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 148

class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: DP dimerization segment
domain: Transcription factor DP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (215), Expect = 6e-22
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 3/65 (4%)

Query: 186 DIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRN---ERLYSSGNAPSGGVALP 242
           + + L+ ER     RI++K + LQEL  Q +  +NL+QRN   E+  S    P+  + LP
Sbjct: 3   ECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLP 62

Query: 243 FILVQ 247
           FI+V 
Sbjct: 63  FIIVN 67

>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor E2F-4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 7e-04
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 151 RRRVYDALNVLMAMDIISK-DKKEIQWK 177
           +RR+YD  NVL  + +I K  K  IQWK
Sbjct: 40  KRRIYDITNVLEGIGLIEKKSKNSIQWK 67

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	263
d1cf7b_	82	Cell cycle transcription factor DP-2 {Human (Homo	100.0
d2azea1	148	Transcription factor DP-1 {Human (Homo sapiens) [T	99.89
d1cf7a_	67	Cell cycle transcription factor E2F-4 {Human (Homo	99.5
d1sfxa_	109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	93.99
d2a61a1	139	Transcriptional regulator TM0710 {Thermotoga marit	92.94

>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor DP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-41  Score=256.85  Aligned_cols=82  Identities=73%  Similarity=1.184  Sum_probs=77.1

Q ss_pred             CcchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccccCCeeee
Q 024762           97 GRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQW  176 (263)
Q Consensus        97 ~kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~Kk~I~W  176 (263)
                      |+|||||||+|||+|+++++|||+||||+||+||.++..+.  +.+++||+||||||||||||||||||||+|+||.|+|
T Consensus         1 gkgLr~~S~kVcekV~~k~~TtY~eVAdeLv~e~~~~~~~~--~~~~~~d~KNIRRRVYDALNVLmA~~II~K~kK~I~W   78 (82)
T d1cf7b_           1 GKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSNNHL--AADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKW   78 (82)
T ss_dssp             CCHHHHHHHHHHHHHHHHSEECHHHHHHHHHHHHHTCTTCC--GGGSHHHHHHHHHHHHHHHHHHHHTTSBCCCSSCEEB
T ss_pred             CccHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhccCC--CcchhhcchhhhHHHHHHHHHHHHHhhhhhcCceeEe
Confidence            68999999999999999999999999999999999877542  3568999999999999999999999999999999999


Q ss_pred             ccCC
Q 024762          177 KGLP  180 (263)
Q Consensus       177 ~G~~  180 (263)
                      .|+|
T Consensus        79 ~Glp   82 (82)
T d1cf7b_          79 IGLP   82 (82)
T ss_dssp             CCCC
T ss_pred             ecCC
Confidence            9997

>d2azea1 e.63.1.1 (A:199-346) Transcription factor DP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: E2F-DP heterodimerization region
superfamily: E2F-DP heterodimerization region
family: DP dimerization segment
domain: Transcription factor DP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-23  Score=175.72  Aligned_cols=77  Identities=30%  Similarity=0.492  Sum_probs=71.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCccccceEEEEcCCCceEEeEeee
Q 024762          184 LNDIEELKAERLGLRNRIEKKTAYLQELEDQFVGLQNLIQRNERLYSS---GNAPSGGVALPFILVQVDIRQLFSCIMAS  260 (263)
Q Consensus       184 ~~~~~~Lk~E~~~l~erI~~Kk~~LqEL~~Q~~alknLI~RNk~~~~~---~~~ps~~I~LPFIlV~T~~~tvI~C~iss  260 (263)
                      .++++.|++|+.+++++|++|+++||||+.|+++|+|||+||+.+++.   +++|+++|+||||||+|+++|+|||+||.
T Consensus         1 aQe~~~Le~E~~~~~erI~~K~~~LqeLi~Q~iafknLV~RN~~~e~~~~~~~~~~~~I~LPFIiV~T~~~t~IdceISe   80 (148)
T d2azea1           1 AQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISN   80 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCGGGEEESSCEEEEEESSCCEEEEECT
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCCCCCCeeecCEEEEecCCCCEEEEEEcc
Confidence            378999999999999999999999999999999999999999988763   35677899999999999999999999985

>d1cf7a_ a.4.5.17 (A:) Cell cycle transcription factor E2F-4 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Cell cycle transcription factor e2f-dp
domain: Cell cycle transcription factor E2F-4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=6.8e-15  Score=108.26  Aligned_cols=61  Identities=33%  Similarity=0.538  Sum_probs=53.9

Q ss_pred             CcchhhHHHHHHHHHHh--cCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc-cCCe
Q 024762           97 GRGLRQFSMKVCEKVES--KGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK-DKKE  173 (263)
Q Consensus        97 ~kGLR~fS~KVcekVk~--kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K-~Kk~  173 (263)
                      .++|..++.++...+.+  .+..+.+++|+.|-                    ...|||||||+||||+||||+| .||.
T Consensus         4 ekSLglLt~kFl~l~~~~~~~~~~L~~aa~~L~--------------------v~~kRRiYDI~NVLe~igli~K~~Kn~   63 (67)
T d1cf7a_           4 EKSLGLLTTKFVSLLQEAKDGVLDLKLAADTLA--------------------VRQKRRIYDITNVLEGIGLIEKKSKNS   63 (67)
T ss_dssp             TTCHHHHHHHHHHHHHHSSTTEEEHHHHHHHTT--------------------TCCTHHHHHHHHHHHHHTSEEEEETTE
T ss_pred             hhhHHHHHHHHHHHHhhCCCCeeeHHHHHHHhc--------------------CcchhhHHHHHHHHhhhhhhhcccCCc
Confidence            47899999999999986  67889999999972                    0257999999999999999999 9999


Q ss_pred             eeec
Q 024762          174 IQWK  177 (263)
Q Consensus       174 I~W~  177 (263)
                      |+|+
T Consensus        64 ~~W~   67 (67)
T d1cf7a_          64 IQWK   67 (67)
T ss_dssp             EEEC
T ss_pred             cccC
Confidence            9996

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical protein AF2008
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.99  E-value=0.085  Score=38.70  Aligned_cols=51  Identities=22%  Similarity=0.307  Sum_probs=44.1

Q ss_pred             cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhcccccc
Q 024762           98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISK  169 (263)
Q Consensus        98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K  169 (263)
                      -||..--.+|+..+.+.+..|-.|||+.+-                     .-|..||++|+-|+.-|+|.+
T Consensus        16 lGlt~~e~~v~~~L~~~g~~t~~eia~~~~---------------------i~~~~v~~~l~~L~~~GlV~r   66 (109)
T d1sfxa_          16 LSFKPSDVRIYSLLLERGGMRVSEIARELD---------------------LSARFVRDRLKVLLKRGFVRR   66 (109)
T ss_dssp             TCCCHHHHHHHHHHHHHCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEE
T ss_pred             cCCCHHHHHHHHHHHhcCCCCHHHHHHHhC---------------------CCcchHHHHHHHHHhCCCEEE
Confidence            577777888999999999999999988852                     447899999999999999987

>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator TM0710
species: Thermotoga maritima [TaxId: 2336]

Probab=92.94  E-value=0.5  Score=34.97  Aligned_cols=62  Identities=13%  Similarity=0.141  Sum_probs=48.5

Q ss_pred             cchhhHHHHHHHHHHhcCCCcHHHHHHHHHHHhcCCCCCCCCCCccccccccchhhhhhHHHHhhhccccccc----CCe
Q 024762           98 RGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKD----KKE  173 (263)
Q Consensus        98 kGLR~fS~KVcekVk~kg~TTYnEVAdeLV~e~~~~~~~~~~~~~~~~deKniKRRVYDalNVL~ai~lI~K~----Kk~  173 (263)
                      -||-+--..|...+...+.+|-+|+|+.+.                     .-+--|+-+++-|+..|+|+|.    .++
T Consensus        26 ~glt~~q~~iL~~i~~~~~~t~~~la~~l~---------------------i~~~tvs~~l~~L~~~gli~r~~~~~D~R   84 (139)
T d2a61a1          26 FGITPAQFDILQKIYFEGPKRPGELSVLLG---------------------VAKSTVTGLVKRLEADGYLTRTPDPADRR   84 (139)
T ss_dssp             HTCCHHHHHHHHHHHHHCCBCHHHHHHHHT---------------------CCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred             cCCCHHHHHHHHHHHHcCCCCHHHHHHHhC---------------------CCcccchHHHHHHHhcCeeeeeeccCCCC
Confidence            467777777888888899999999999864                     2346689999999999999983    256


Q ss_pred             eeeccCC
Q 024762          174 IQWKGLP  180 (263)
Q Consensus       174 I~W~G~~  180 (263)
                      ..+..+.
T Consensus        85 ~~~i~LT   91 (139)
T d2a61a1          85 AYFLVIT   91 (139)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEEC
Confidence            7776554