Citrus Sinensis ID: 024766
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 263 | 2.2.26 [Sep-21-2011] | |||||||
| Q6GMI9 | 418 | UDP-glucuronic acid decar | yes | no | 0.536 | 0.337 | 0.709 | 6e-55 | |
| Q8NBZ7 | 420 | UDP-glucuronic acid decar | yes | no | 0.536 | 0.335 | 0.709 | 8e-55 | |
| Q5R885 | 420 | UDP-glucuronic acid decar | yes | no | 0.536 | 0.335 | 0.709 | 8e-55 | |
| Q6DF08 | 421 | UDP-glucuronic acid decar | yes | no | 0.536 | 0.334 | 0.709 | 8e-55 | |
| Q91XL3 | 420 | UDP-glucuronic acid decar | yes | no | 0.536 | 0.335 | 0.709 | 8e-55 | |
| Q5PQX0 | 420 | UDP-glucuronic acid decar | yes | no | 0.536 | 0.335 | 0.709 | 9e-55 | |
| Q57664 | 305 | Putative UDP-glucose 4-ep | yes | no | 0.467 | 0.403 | 0.360 | 1e-14 | |
| Q6MWV3 | 314 | UDP-glucose 4-epimerase O | yes | no | 0.490 | 0.410 | 0.335 | 1e-13 | |
| A0R5C5 | 313 | UDP-glucose 4-epimerase O | no | no | 0.509 | 0.428 | 0.326 | 1e-12 | |
| P21977 | 332 | UDP-glucose 4-epimerase O | yes | no | 0.528 | 0.418 | 0.324 | 4e-12 |
| >sp|Q6GMI9|UXS1_DANRE UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 214 bits (544), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 100/141 (70%), Positives = 115/141 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 84 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 143
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 144 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 203
Query: 234 YGDPLEHPQKETYWGNVNPIG 254
YGDP HPQ E YWG+VNPIG
Sbjct: 204 YGDPEVHPQNEDYWGHVNPIG 224
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis (By similarity). Essential during embryogenesis for craniofacial development. Danio rerio (taxid: 7955) EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 5 |
| >sp|Q8NBZ7|UXS1_HUMAN UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 100/141 (70%), Positives = 115/141 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIG 254
YGDP HPQ E YWG+VNPIG
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIG 226
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q5R885|UXS1_PONAB UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 100/141 (70%), Positives = 115/141 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIG 254
YGDP HPQ E YWG+VNPIG
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIG 226
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Pongo abelii (taxid: 9601) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q6DF08|UXS1_XENTR UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 100/141 (70%), Positives = 115/141 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 87 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 146
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 147 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 206
Query: 234 YGDPLEHPQKETYWGNVNPIG 254
YGDP HPQ E YWG+VNPIG
Sbjct: 207 YGDPEVHPQSEEYWGHVNPIG 227
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Xenopus tropicalis (taxid: 8364) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q91XL3|UXS1_MOUSE UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 100/141 (70%), Positives = 115/141 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIG 254
YGDP HPQ E YWG+VNPIG
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIG 226
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Mus musculus (taxid: 10090) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q5PQX0|UXS1_RAT UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 100/141 (70%), Positives = 115/141 (81%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
+ R RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDV
Sbjct: 86 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV 145
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233
VEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEV
Sbjct: 146 VEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEV 205
Query: 234 YGDPLEHPQKETYWGNVNPIG 254
YGDP HPQ E YWG+VNPIG
Sbjct: 206 YGDPEVHPQSEDYWGHVNPIG 226
|
Catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid to UDP-xylose. Necessary for the biosynthesis of the core tetrasaccharide in glycosaminoglycan biosynthesis. Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 5 |
| >sp|Q57664|GALE_METJA Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0211 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 78/136 (57%), Gaps = 13/136 (9%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I+VTGGAGF+GSH+VDKLI+ +VI++DN TG K+N+ NP+ E + D+ + L
Sbjct: 2 ILVTGGAGFIGSHIVDKLIENNYDVIILDNLTTGNKNNI-----NPKAEFVNADIRDKDL 56
Query: 179 LE------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS- 231
E V+ + H A + + NPV NV+GT+N+L + ++ ++ ++S
Sbjct: 57 DEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRKYDIDKIVFASSG 116
Query: 232 -EVYGDPLEHPQKETY 246
VYG+P P E +
Sbjct: 117 GAVYGEPNYLPVDENH 132
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q6MWV3|GALE_MYCTU UDP-glucose 4-epimerase OS=Mycobacterium tuberculosis GN=galE1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+R +VTG AGF+GS LVD+L+ G V+ +DNF TGR NL H N + D+V
Sbjct: 1 MRALVTGAAGFIGSTLVDRLLADGHSVVGLDNFATGRATNLEHLADNSAHVFVEADIVTA 60
Query: 177 ILLEV------DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230
L + + ++HLA +P NV+GT+ + A++ G + ++ ++
Sbjct: 61 DLHAILEQHRPEVVFHLAAQIDVRRSVADPQFDAAVNVIGTVRLAEAARQTGVRKIVHTS 120
Query: 231 S--EVYGDPLEHPQKET 245
S +YG P E+P ET
Sbjct: 121 SGGSIYGTPPEYPTPET 137
|
Mycobacterium tuberculosis (taxid: 1773) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|A0R5C5|GALE_MYCS2 UDP-glucose 4-epimerase OS=Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_6142 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 10/144 (6%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+R +VTG AGF+GS LVD+L+ G V+ +D+ +GR +NL + +FE ++ D+V+
Sbjct: 1 MRTLVTGAAGFIGSTLVDRLLADGHGVVGLDDLSSGRAENLHSAENSDKFEFVKADIVDA 60
Query: 177 IL------LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL--T 228
L + + I+HLA S +P NV+GT+ + A+ G + ++ +
Sbjct: 61 DLTGLLAEFKPEVIFHLAAQISVKRSVDDPPFDATVNVVGTVRLAEAARLAGVRKVVHTS 120
Query: 229 STSEVYGDPLEHPQKETYWGNVNP 252
S VYG P +P E VNP
Sbjct: 121 SGGSVYGTPPAYPTSEDM--PVNP 142
|
Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155) (taxid: 246196) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|P21977|GALE_STRTR UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 77/145 (53%), Gaps = 6/145 (4%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE 175
+ I+V GGAG++GSH+VD+L+++G E V+V+D+ TG + + + +L D +
Sbjct: 1 MAILVLGGAGYIGSHMVDRLVEKGQEKVVVVDSLVTGHRAAVHPDAIFYQGDLSDQDFMR 60
Query: 176 PILLE---VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-TSTS 231
+ E VD + H A + P+K N G + +L + G K+++ +ST+
Sbjct: 61 KVFKENPDVDAVIHFAAYSLVGESMEKPLKYFDNNTAGMVKLLEVMNECGVKYIVFSSTA 120
Query: 232 EVYGDPLEHPQKETYWGN-VNPIGE 255
YG P E P ET N +NP GE
Sbjct: 121 ATYGIPEEIPILETTPQNPINPYGE 145
|
Streptococcus thermophilus (taxid: 1308) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 263 | ||||||
| 209420680 | 436 | UDP-glucuronic acid decarboxylase 1 [Gos | 0.961 | 0.580 | 0.798 | 1e-111 | |
| 225439840 | 437 | PREDICTED: UDP-glucuronic acid decarboxy | 0.961 | 0.578 | 0.796 | 1e-111 | |
| 449439990 | 438 | PREDICTED: UDP-glucuronic acid decarboxy | 0.935 | 0.561 | 0.776 | 1e-111 | |
| 356548166 | 427 | PREDICTED: UDP-glucuronic acid decarboxy | 0.935 | 0.576 | 0.792 | 1e-110 | |
| 356537387 | 427 | PREDICTED: UDP-glucuronic acid decarboxy | 0.935 | 0.576 | 0.788 | 1e-109 | |
| 356537389 | 444 | PREDICTED: UDP-glucuronic acid decarboxy | 0.935 | 0.554 | 0.788 | 1e-109 | |
| 297816652 | 434 | UDP-glucuronic acid decarboxylase 1 [Ara | 0.958 | 0.580 | 0.789 | 1e-108 | |
| 356537391 | 451 | PREDICTED: UDP-glucuronic acid decarboxy | 0.927 | 0.541 | 0.776 | 1e-106 | |
| 145361853 | 435 | UDP-glucuronic acid decarboxylase 1 [Ara | 0.946 | 0.572 | 0.777 | 1e-105 | |
| 145332823 | 354 | UDP-glucuronic acid decarboxylase 1 [Ara | 0.946 | 0.703 | 0.777 | 1e-105 |
| >gi|209420680|gb|ACI46983.1| UDP-glucuronic acid decarboxylase 1 [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/258 (79%), Positives = 218/258 (84%), Gaps = 5/258 (1%)
Query: 2 KLHKQSSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGST 61
+LHKQSS+ RRDEE L Q PY K+ KHPRSLPRSINYLFKEQRLLFI +GILIGST
Sbjct: 3 QLHKQSSINHRRDEEILIPQTPPYSPKSLKHPRSLPRSINYLFKEQRLLFIFIGILIGST 62
Query: 62 FFILQPILSRLGPPQELHPF--HALTAN--QQRQSFQFHRTSSFGAKTGRVPVGIGRRRL 117
FFILQP LSRLGP E HP + + N Q F + K GRVPVGIGRRR+
Sbjct: 63 FFILQPTLSRLGP-TETHPSVPKSFSNNVVSHTQEFSVSNQNPIHGKMGRVPVGIGRRRM 121
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
RIVVTGGAGFVGSHLVDKLI RGDEVIVIDNFFTGRK+N+VH F NPRFELIRHDVVEPI
Sbjct: 122 RIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENVVHLFGNPRFELIRHDVVEPI 181
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237
LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA+FLLTSTSEVYGDP
Sbjct: 182 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDP 241
Query: 238 LEHPQKETYWGNVNPIGE 255
L+HPQKETYWGNVNPIGE
Sbjct: 242 LQHPQKETYWGNVNPIGE 259
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439840|ref|XP_002277802.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/256 (79%), Positives = 217/256 (84%), Gaps = 3/256 (1%)
Query: 2 KLHKQSSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGST 61
+LHKQSS+ RRDEE + Q+ PY KT KHPRSLPRSINYLFKEQRLLFILVGILIGST
Sbjct: 3 QLHKQSSVNHRRDEEIPTSQSPPYSPKTLKHPRSLPRSINYLFKEQRLLFILVGILIGST 62
Query: 62 FFILQPILSRLGPPQELH--PFHALTANQQRQSFQFHRTSSFGA-KTGRVPVGIGRRRLR 118
FFI+QP LSRLGP + P R S GA K GR+PVGIGRRRLR
Sbjct: 63 FFIVQPSLSRLGPAETRSTIPRSVTIGVTSRDQISIPYPQSNGAGKVGRIPVGIGRRRLR 122
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
IVVTGGAGFVGSHLVDKLI RGD+VIVIDNFFTGRK+N++HHF NPRFELIRHDVVEPIL
Sbjct: 123 IVVTGGAGFVGSHLVDKLIARGDDVIVIDNFFTGRKENVMHHFGNPRFELIRHDVVEPIL 182
Query: 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238
LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR+GA+FLLTSTSEVYGDPL
Sbjct: 183 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPL 242
Query: 239 EHPQKETYWGNVNPIG 254
EHPQKETYWGNVNPIG
Sbjct: 243 EHPQKETYWGNVNPIG 258
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449439990|ref|XP_004137768.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Cucumis sativus] gi|449517780|ref|XP_004165922.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/264 (77%), Positives = 217/264 (82%), Gaps = 18/264 (6%)
Query: 2 KLHKQSSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGST 61
+LHKQSS+ RRDEE SPY K KHPRSLPRSINYLF+EQRLLF+ VGILIGST
Sbjct: 6 QLHKQSSINHRRDEEVPPVPTSPYSPKALKHPRSLPRSINYLFREQRLLFVFVGILIGST 65
Query: 62 FFILQPILSRLGPPQELHPFHALTANQQRQSFQFHRTS----------SFGAKTGRVPVG 111
FFILQP LSR+GP + + R+SF TS FG GRVPVG
Sbjct: 66 FFILQPSLSRIGPSE--------AGSAIRRSFATGLTSRDQVSGSGIYGFGKTGGRVPVG 117
Query: 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH 171
IGRRRLRIVVTGGAGFVGSHLVDKLI+RGD+VIVIDNFFTGRKDNLVHH NPRFELIRH
Sbjct: 118 IGRRRLRIVVTGGAGFVGSHLVDKLIERGDDVIVIDNFFTGRKDNLVHHLGNPRFELIRH 177
Query: 172 DVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231
DVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR+GA+FLLTSTS
Sbjct: 178 DVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTS 237
Query: 232 EVYGDPLEHPQKETYWGNVNPIGE 255
EVYGDPLEHPQKETYWGNVNPIGE
Sbjct: 238 EVYGDPLEHPQKETYWGNVNPIGE 261
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356548166|ref|XP_003542474.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/255 (79%), Positives = 218/255 (85%), Gaps = 9/255 (3%)
Query: 2 KLHKQSSMTQRRDEETL-SGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGS 60
+LHKQ+S+ RR+EE L S + SPY K+ KH RSLPRSINYL +EQRLLFILVGILIGS
Sbjct: 3 QLHKQTSLNHRREEEMLGSSETSPYSPKSIKHTRSLPRSINYLLREQRLLFILVGILIGS 62
Query: 61 TFFILQPILSRLGPPQELHPFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIV 120
TFFI+QP LSRLGPP+ +H F T R + G +TGRVPVGIG RR RIV
Sbjct: 63 TFFIIQPTLSRLGPPEPVHTFLPRTG--------LARFAGPGPRTGRVPVGIGGRRQRIV 114
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE 180
VTGGAGFVGSHLVDKLI RGD+VIVIDNFFTGRK+NLVH F NPRFELIRHDVVEPILLE
Sbjct: 115 VTGGAGFVGSHLVDKLIARGDDVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLE 174
Query: 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEH 240
VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR+GA+FLLTSTSEVYGDPLEH
Sbjct: 175 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPLEH 234
Query: 241 PQKETYWGNVNPIGE 255
PQKETYWGNVNPIGE
Sbjct: 235 PQKETYWGNVNPIGE 249
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537387|ref|XP_003537209.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/255 (78%), Positives = 217/255 (85%), Gaps = 9/255 (3%)
Query: 2 KLHKQSSMTQRRDEETL-SGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGS 60
+LHKQ+S+ RR+EE L S ++SPY K+ KH RSLPRSINYL +EQRLLFILVGILIGS
Sbjct: 3 QLHKQTSLNHRREEEMLGSSESSPYSPKSIKHTRSLPRSINYLLREQRLLFILVGILIGS 62
Query: 61 TFFILQPILSRLGPPQELHPFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIV 120
TFFI+QP LSR+GPP+ H F T R S +TGRVPVGIG RR RIV
Sbjct: 63 TFFIIQPTLSRMGPPEPAHTFLPRTG--------LARFSGTRPRTGRVPVGIGGRRQRIV 114
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE 180
VTGGAGFVGSHLVDKLI RGD+VIVIDNFFTGRK+NLVH F NPRFELIRHDVVEPILLE
Sbjct: 115 VTGGAGFVGSHLVDKLIARGDDVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLE 174
Query: 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEH 240
VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR+GA+FLLTSTSEVYGDPLEH
Sbjct: 175 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPLEH 234
Query: 241 PQKETYWGNVNPIGE 255
PQKETYWGNVNPIGE
Sbjct: 235 PQKETYWGNVNPIGE 249
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537389|ref|XP_003537210.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/255 (78%), Positives = 217/255 (85%), Gaps = 9/255 (3%)
Query: 2 KLHKQSSMTQRRDEETL-SGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGS 60
+LHKQ+S+ RR+EE L S ++SPY K+ KH RSLPRSINYL +EQRLLFILVGILIGS
Sbjct: 3 QLHKQTSLNHRREEEMLGSSESSPYSPKSIKHTRSLPRSINYLLREQRLLFILVGILIGS 62
Query: 61 TFFILQPILSRLGPPQELHPFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIV 120
TFFI+QP LSR+GPP+ H F T R S +TGRVPVGIG RR RIV
Sbjct: 63 TFFIIQPTLSRMGPPEPAHTFLPRTG--------LARFSGTRPRTGRVPVGIGGRRQRIV 114
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE 180
VTGGAGFVGSHLVDKLI RGD+VIVIDNFFTGRK+NLVH F NPRFELIRHDVVEPILLE
Sbjct: 115 VTGGAGFVGSHLVDKLIARGDDVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLE 174
Query: 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEH 240
VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR+GA+FLLTSTSEVYGDPLEH
Sbjct: 175 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPLEH 234
Query: 241 PQKETYWGNVNPIGE 255
PQKETYWGNVNPIGE
Sbjct: 235 PQKETYWGNVNPIGE 249
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297816652|ref|XP_002876209.1| UDP-glucuronic acid decarboxylase 1 [Arabidopsis lyrata subsp. lyrata] gi|297322047|gb|EFH52468.1| UDP-glucuronic acid decarboxylase 1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/257 (78%), Positives = 218/257 (84%), Gaps = 5/257 (1%)
Query: 2 KLHKQSSMTQRRDEETLS-GQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGS 60
+LHKQ M+ +RDEET+ Q+SPY KT KHPRSLPRS++YLF+EQRLLFILVGILIGS
Sbjct: 3 QLHKQ--MSSKRDEETIPMSQSSPYSPKTLKHPRSLPRSLHYLFREQRLLFILVGILIGS 60
Query: 61 TFFILQPILSRLGPPQELHPFHALTANQQRQSFQFHRT--SSFGAKTGRVPVGIGRRRLR 118
TFFILQP LSRLG + + S +T S G +TGRVPVGIGR+RLR
Sbjct: 61 TFFILQPSLSRLGAAESTSLITRSVSYAVSDSPPSMKTFNSGGGGRTGRVPVGIGRKRLR 120
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
IVVTGGAGFVGSHLVDKLI RGDEVIVIDNFFTGRK+NLVH F NPRFELIRHDVVEPIL
Sbjct: 121 IVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFSNPRFELIRHDVVEPIL 180
Query: 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238
LEVD IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA+FLLTSTSEVYGDPL
Sbjct: 181 LEVDHIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPL 240
Query: 239 EHPQKETYWGNVNPIGE 255
EHPQKETYWGNVNPIGE
Sbjct: 241 EHPQKETYWGNVNPIGE 257
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356537391|ref|XP_003537211.1| PREDICTED: UDP-glucuronic acid decarboxylase 1-like isoform 3 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/255 (77%), Positives = 214/255 (83%), Gaps = 11/255 (4%)
Query: 2 KLHKQSSMTQRRDEETL-SGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGS 60
+LHKQ+S+ RR+EE L S ++SPY K+ KH RSLPRSINYL +EQRLLFILVGILIGS
Sbjct: 3 QLHKQTSLNHRREEEMLGSSESSPYSPKSIKHTRSLPRSINYLLREQRLLFILVGILIGS 62
Query: 61 TFFILQPILSRLGPPQELHPFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIV 120
TFFI+QP LSR+GPP+ H F T R S +TGRVPVGIG RR RIV
Sbjct: 63 TFFIIQPTLSRMGPPEPAHTFLPRTG--------LARFSGTRPRTGRVPVGIGGRRQRIV 114
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE 180
VTGGAGFVGSHLVDKLI RGD+VIVIDNFFTGRK+NLVH F NPRFELIRHDVVEPILLE
Sbjct: 115 VTGGAGFVGSHLVDKLIARGDDVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLE 174
Query: 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEH 240
VDQIYHLACPASPVHYKYNPV KTNVMGTLNMLGLAKR+GA+FLLTSTSEVYGDPLEH
Sbjct: 175 VDQIYHLACPASPVHYKYNPV--YKTNVMGTLNMLGLAKRIGARFLLTSTSEVYGDPLEH 232
Query: 241 PQKETYWGNVNPIGE 255
PQKETYWGNVNPIGE
Sbjct: 233 PQKETYWGNVNPIGE 247
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145361853|ref|NP_850694.2| UDP-glucuronic acid decarboxylase 1 [Arabidopsis thaliana] gi|17473549|gb|AAL38251.1| dTDP-glucose 4-6-dehydratase-like protein [Arabidopsis thaliana] gi|28058970|gb|AAO29973.1| dTDP-glucose 4-6-dehydratase-like protein [Arabidopsis thaliana] gi|332645579|gb|AEE79100.1| UDP-glucuronic acid decarboxylase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/261 (77%), Positives = 220/261 (84%), Gaps = 12/261 (4%)
Query: 2 KLHKQSSMTQRRDEETLS-GQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGS 60
+LHKQ M+ +RDEET+ Q+SPY KT KHPRSLPRS++YLF+EQRLLFILVGILIGS
Sbjct: 3 QLHKQ--MSSKRDEETIPMSQSSPYSPKTLKHPRSLPRSLHYLFREQRLLFILVGILIGS 60
Query: 61 TFFILQPILSRLGPPQELH------PFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGR 114
TFFILQP LSRLG + + + R +F + G +TGRVPVGIGR
Sbjct: 61 TFFILQPSLSRLGAAESTSLITRSVSYAVTDSPPSRSTFN---SGGGGGRTGRVPVGIGR 117
Query: 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV 174
+RLRIVVTGGAGFVGSHLVDKLI RGDEVIVIDNFFTGRK+NLVH F NPRFELIRHDVV
Sbjct: 118 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFSNPRFELIRHDVV 177
Query: 175 EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234
EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA+FLLTSTSEVY
Sbjct: 178 EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVY 237
Query: 235 GDPLEHPQKETYWGNVNPIGE 255
GDPLEHPQKETYWGNVNPIGE
Sbjct: 238 GDPLEHPQKETYWGNVNPIGE 258
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|145332823|ref|NP_001078277.1| UDP-glucuronic acid decarboxylase 1 [Arabidopsis thaliana] gi|332645581|gb|AEE79102.1| UDP-glucuronic acid decarboxylase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 203/261 (77%), Positives = 220/261 (84%), Gaps = 12/261 (4%)
Query: 2 KLHKQSSMTQRRDEETLS-GQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGS 60
+LHKQ M+ +RDEET+ Q+SPY KT KHPRSLPRS++YLF+EQRLLFILVGILIGS
Sbjct: 3 QLHKQ--MSSKRDEETIPMSQSSPYSPKTLKHPRSLPRSLHYLFREQRLLFILVGILIGS 60
Query: 61 TFFILQPILSRLGPPQELH------PFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGR 114
TFFILQP LSRLG + + + R +F + G +TGRVPVGIGR
Sbjct: 61 TFFILQPSLSRLGAAESTSLITRSVSYAVTDSPPSRSTFN---SGGGGGRTGRVPVGIGR 117
Query: 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV 174
+RLRIVVTGGAGFVGSHLVDKLI RGDEVIVIDNFFTGRK+NLVH F NPRFELIRHDVV
Sbjct: 118 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFSNPRFELIRHDVV 177
Query: 175 EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234
EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA+FLLTSTSEVY
Sbjct: 178 EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVY 237
Query: 235 GDPLEHPQKETYWGNVNPIGE 255
GDPLEHPQKETYWGNVNPIGE
Sbjct: 238 GDPLEHPQKETYWGNVNPIGE 258
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 263 | ||||||
| TAIR|locus:2081675 | 445 | AUD1 "AT3G62830" [Arabidopsis | 0.939 | 0.555 | 0.556 | 3.1e-67 | |
| TAIR|locus:2078206 | 341 | UXS5 "UDP-XYL synthase 5" [Ara | 0.494 | 0.381 | 0.793 | 1.5e-53 | |
| TAIR|locus:2053275 | 343 | UXS6 "UDP-XYL synthase 6" [Ara | 0.494 | 0.379 | 0.786 | 4.9e-53 | |
| TAIR|locus:2168539 | 357 | UXS3 "UDP-glucuronic acid deca | 0.494 | 0.364 | 0.770 | 1.3e-52 | |
| FB|FBgn0035848 | 441 | CG7979 [Drosophila melanogaste | 0.494 | 0.294 | 0.715 | 1.8e-48 | |
| UNIPROTKB|E1BV28 | 421 | UXS1 "Uncharacterized protein" | 0.494 | 0.308 | 0.723 | 3.7e-48 | |
| UNIPROTKB|F1PU61 | 414 | UXS1 "Uncharacterized protein" | 0.494 | 0.314 | 0.723 | 3.7e-48 | |
| UNIPROTKB|B3KV61 | 363 | UXS1 "UDP-glucuronate decarbox | 0.494 | 0.358 | 0.723 | 3.7e-48 | |
| UNIPROTKB|C9JW33 | 190 | UXS1 "UDP-glucuronic acid deca | 0.494 | 0.684 | 0.723 | 3.7e-48 | |
| UNIPROTKB|Q8NBZ7 | 420 | UXS1 "UDP-glucuronic acid deca | 0.494 | 0.309 | 0.723 | 3.7e-48 |
| TAIR|locus:2081675 AUD1 "AT3G62830" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 142/255 (55%), Positives = 172/255 (67%)
Query: 7 SSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFILQ 66
S + RR ET Y K K ++ R + Y+ +EQRL+F+LVGI I + F +
Sbjct: 3 SELINRR-HETDQPTADAYYPKPIKPWFTVTRPMRYMLREQRLIFVLVGIAIATLVFTIF 61
Query: 67 PILSRLGPPQE------LHPFHA-LTANQQRQSFQFHRTSSFGAKXXXXXXXXXXXXXXX 119
P ++ P + + P + + A Q ++ + GA
Sbjct: 62 PRSTQSTPYSDPFSGYGIRPDESYVPAIQAQRKPSLEYLNRIGATGGKIPLGLKRKGLRV 121
Query: 120 XXXXXAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL 179
AGFVGSHLVD+L+ RGD VIV+DNFFTGRK+N++HHF NP FE+IRHDVVEPILL
Sbjct: 122 VVTGGAGFVGSHLVDRLMARGDTVIVVDNFFTGRKENVMHHFSNPNFEMIRHDVVEPILL 181
Query: 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLE 239
EVDQIYHLACPASPVHYK+NPVKTIKTNV+GTLNMLGLAKRVGA+FLLTSTSEVYGDPL+
Sbjct: 182 EVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQ 241
Query: 240 HPQKETYWGNVNPIG 254
HPQ ETYWGNVNPIG
Sbjct: 242 HPQVETYWGNVNPIG 256
|
|
| TAIR|locus:2078206 UXS5 "UDP-XYL synthase 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 104/131 (79%), Positives = 116/131 (88%)
Query: 125 AGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQ 183
AGF+GSHLVDKL++ +EVIV DN+FTG KDNL +PRFELIRHDV EP+L+EVDQ
Sbjct: 37 AGFIGSHLVDKLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQ 96
Query: 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQK 243
IYHLACPASP+ YKYNPVKTIKTNV+GTLNMLGLAKRVGA+ LLTSTSEVYGDPL HPQ
Sbjct: 97 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQP 156
Query: 244 ETYWGNVNPIG 254
E+YWGNVNPIG
Sbjct: 157 ESYWGNVNPIG 167
|
|
| TAIR|locus:2053275 UXS6 "UDP-XYL synthase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 103/131 (78%), Positives = 115/131 (87%)
Query: 125 AGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQ 183
AGF+GSHLVDKL+ + +EVIV DN+FTG KDNL +PRFELIRHDV EP+ +EVDQ
Sbjct: 39 AGFIGSHLVDKLMQNEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLFVEVDQ 98
Query: 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQK 243
IYHLACPASP+ YKYNPVKTIKTNV+GTLNMLGLAKRVGA+ LLTSTSEVYGDPL HPQ
Sbjct: 99 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQT 158
Query: 244 ETYWGNVNPIG 254
E+YWGNVNPIG
Sbjct: 159 ESYWGNVNPIG 169
|
|
| TAIR|locus:2168539 UXS3 "UDP-glucuronic acid decarboxylase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
Identities = 101/131 (77%), Positives = 116/131 (88%)
Query: 125 AGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQ 183
AGF+GSHLVDKL++ +EV+V DN+FTG K+NL +PRFELIRHDV EP+L+EVD+
Sbjct: 53 AGFIGSHLVDKLMENEKNEVVVADNYFTGSKENLKKWIGHPRFELIRHDVTEPLLIEVDR 112
Query: 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQK 243
IYHLACPASP+ YKYNPVKTIKTNV+GTLNMLGLAKRVGA+ LLTSTSEVYGDPL HPQ
Sbjct: 113 IYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLIHPQP 172
Query: 244 ETYWGNVNPIG 254
E+YWGNVNPIG
Sbjct: 173 ESYWGNVNPIG 183
|
|
| FB|FBgn0035848 CG7979 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
Identities = 93/130 (71%), Positives = 107/130 (82%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHLVD L+ +G EVIV+DNFFTGRK N+ H + FELI HD+V P+ +E+D+I
Sbjct: 124 AGFVGSHLVDDLMVQGHEVIVVDNFFTGRKRNVEHWLGHENFELIHHDIVNPLFIEIDEI 183
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP HY YNPVKTIKTN MGT+N+LGLAKRV AK L+ STSEVYGDP HPQ E
Sbjct: 184 YHLASPASPPHYMYNPVKTIKTNTMGTINVLGLAKRVMAKVLIASTSEVYGDPTVHPQPE 243
Query: 245 TYWGNVNPIG 254
TYWG+VNPIG
Sbjct: 244 TYWGHVNPIG 253
|
|
| UNIPROTKB|E1BV28 UXS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 94/130 (72%), Positives = 106/130 (81%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDVVEP+ +EVDQI
Sbjct: 98 AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQI 157
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEVYGDP HPQ E
Sbjct: 158 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQNE 217
Query: 245 TYWGNVNPIG 254
YWG+VNPIG
Sbjct: 218 DYWGHVNPIG 227
|
|
| UNIPROTKB|F1PU61 UXS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 94/130 (72%), Positives = 106/130 (81%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDVVEP+ +EVDQI
Sbjct: 91 AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQI 150
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEVYGDP HPQ E
Sbjct: 151 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSE 210
Query: 245 TYWGNVNPIG 254
YWG+VNPIG
Sbjct: 211 DYWGHVNPIG 220
|
|
| UNIPROTKB|B3KV61 UXS1 "UDP-glucuronate decarboxylase 1, isoform CRA_a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 94/130 (72%), Positives = 106/130 (81%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDVVEP+ +EVDQI
Sbjct: 40 AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQI 99
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEVYGDP HPQ E
Sbjct: 100 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSE 159
Query: 245 TYWGNVNPIG 254
YWG+VNPIG
Sbjct: 160 DYWGHVNPIG 169
|
|
| UNIPROTKB|C9JW33 UXS1 "UDP-glucuronic acid decarboxylase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 94/130 (72%), Positives = 106/130 (81%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDVVEP+ +EVDQI
Sbjct: 40 AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQI 99
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEVYGDP HPQ E
Sbjct: 100 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSE 159
Query: 245 TYWGNVNPIG 254
YWG+VNPIG
Sbjct: 160 DYWGHVNPIG 169
|
|
| UNIPROTKB|Q8NBZ7 UXS1 "UDP-glucuronic acid decarboxylase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
Identities = 94/130 (72%), Positives = 106/130 (81%)
Query: 125 AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQI 184
AGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDVVEP+ +EVDQI
Sbjct: 97 AGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQI 156
Query: 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKE 244
YHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEVYGDP HPQ E
Sbjct: 157 YHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSE 216
Query: 245 TYWGNVNPIG 254
YWG+VNPIG
Sbjct: 217 DYWGHVNPIG 226
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6GMI9 | UXS1_DANRE | 4, ., 1, ., 1, ., 3, 5 | 0.7092 | 0.5361 | 0.3373 | yes | no |
| Q5R885 | UXS1_PONAB | 4, ., 1, ., 1, ., 3, 5 | 0.7092 | 0.5361 | 0.3357 | yes | no |
| Q8NBZ7 | UXS1_HUMAN | 4, ., 1, ., 1, ., 3, 5 | 0.7092 | 0.5361 | 0.3357 | yes | no |
| Q5PQX0 | UXS1_RAT | 4, ., 1, ., 1, ., 3, 5 | 0.7092 | 0.5361 | 0.3357 | yes | no |
| Q91XL3 | UXS1_MOUSE | 4, ., 1, ., 1, ., 3, 5 | 0.7092 | 0.5361 | 0.3357 | yes | no |
| Q6DF08 | UXS1_XENTR | 4, ., 1, ., 1, ., 3, 5 | 0.7092 | 0.5361 | 0.3349 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 263 | |||
| PLN02166 | 436 | PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | 1e-152 | |
| PLN02206 | 442 | PLN02206, PLN02206, UDP-glucuronate decarboxylase | 1e-115 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 1e-94 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 1e-38 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 5e-35 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 1e-30 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 4e-29 | |
| cd05257 | 316 | cd05257, Arna_like_SDR_e, Arna decarboxylase_like, | 1e-26 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 1e-24 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 2e-24 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 2e-21 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 5e-21 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 5e-19 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 2e-18 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 2e-18 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 8e-18 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 1e-17 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 2e-17 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 4e-17 | |
| cd05273 | 328 | cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP- | 7e-16 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 7e-15 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 9e-15 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 2e-14 | |
| cd05248 | 317 | cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannohepto | 4e-14 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 8e-14 | |
| TIGR02197 | 314 | TIGR02197, heptose_epim, ADP-L-glycero-D-manno-hep | 7e-13 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 6e-12 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 2e-11 | |
| cd05227 | 301 | cd05227, AR_SDR_e, aldehyde reductase, extended (e | 4e-11 | |
| pfam07993 | 245 | pfam07993, NAD_binding_4, Male sterility protein | 8e-11 | |
| cd05263 | 293 | cd05263, MupV_like_SDR_e, Pseudomonas fluorescens | 1e-10 | |
| pfam01073 | 280 | pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr | 2e-10 | |
| PRK15181 | 348 | PRK15181, PRK15181, Vi polysaccharide biosynthesis | 2e-10 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 4e-10 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 5e-10 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 9e-10 | |
| cd05232 | 303 | cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, | 1e-09 | |
| cd05241 | 331 | cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d | 1e-09 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 1e-09 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 3e-09 | |
| TIGR01472 | 343 | TIGR01472, gmd, GDP-mannose 4,6-dehydratase | 8e-09 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 2e-08 | |
| cd05235 | 290 | cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | 3e-08 | |
| cd05239 | 300 | cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte | 5e-08 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 7e-08 | |
| cd05238 | 305 | cd05238, Gne_like_SDR_e, Escherichia coli Gne (a n | 7e-08 | |
| cd08958 | 293 | cd08958, FR_SDR_e, flavonoid reductase (FR), exten | 9e-08 | |
| cd05193 | 295 | cd05193, AR_like_SDR_e, aldehyde reductase, flavon | 1e-07 | |
| PRK08125 | 660 | PRK08125, PRK08125, bifunctional UDP-glucuronic ac | 2e-07 | |
| PLN02427 | 386 | PLN02427, PLN02427, UDP-apiose/xylose synthase | 2e-07 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 3e-07 | |
| cd05272 | 308 | cd05272, TDH_SDR_e, L-threonine dehydrogenase, ext | 6e-07 | |
| PLN02695 | 370 | PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | 1e-06 | |
| cd09813 | 335 | cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD | 1e-06 | |
| PLN02653 | 340 | PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | 1e-06 | |
| COG3320 | 382 | COG3320, COG3320, Putative dehydrogenase domain of | 1e-06 | |
| cd09811 | 354 | cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD | 2e-06 | |
| COG1091 | 281 | COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C | 2e-06 | |
| PLN02260 | 668 | PLN02260, PLN02260, probable rhamnose biosynthetic | 2e-06 | |
| cd05240 | 306 | cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase | 4e-06 | |
| TIGR03466 | 328 | TIGR03466, HpnA, hopanoid-associated sugar epimera | 4e-06 | |
| PRK11908 | 347 | PRK11908, PRK11908, NAD-dependent epimerase/dehydr | 4e-06 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 8e-06 | |
| PRK11150 | 308 | PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epi | 9e-06 | |
| COG0702 | 275 | COG0702, COG0702, Predicted nucleoside-diphosphate | 1e-05 | |
| TIGR04130 | 337 | TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehyd | 2e-05 | |
| cd02266 | 186 | cd02266, SDR, Short-chain dehydrogenases/reductase | 2e-05 | |
| cd05254 | 280 | cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4 | 7e-05 | |
| cd05229 | 302 | cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | 1e-04 | |
| TIGR01746 | 367 | TIGR01746, Thioester-redct, thioester reductase do | 1e-04 | |
| cd05242 | 296 | cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | 2e-04 | |
| TIGR01214 | 287 | TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | 3e-04 | |
| cd05262 | 291 | cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | 3e-04 | |
| PRK07201 | 657 | PRK07201, PRK07201, short chain dehydrogenase; Pro | 4e-04 | |
| cd05245 | 293 | cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | 4e-04 | |
| TIGR01777 | 291 | TIGR01777, yfcH, TIGR01777 family protein | 4e-04 | |
| cd05236 | 320 | cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (F | 6e-04 | |
| pfam04321 | 284 | pfam04321, RmlD_sub_bind, RmlD substrate binding d | 6e-04 | |
| cd05271 | 273 | cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub | 7e-04 | |
| COG1090 | 297 | COG1090, COG1090, Predicted nucleoside-diphosphate | 8e-04 | |
| cd05265 | 250 | cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | 0.002 | |
| cd05243 | 203 | cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | 0.002 | |
| PLN02986 | 322 | PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase | 0.004 | |
| cd05266 | 251 | cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | 0.004 |
| >gnl|CDD|165812 PLN02166, PLN02166, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 431 bits (1109), Expect = e-152
Identities = 208/257 (80%), Positives = 219/257 (85%), Gaps = 3/257 (1%)
Query: 2 KLHKQSSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGST 61
+LHKQ S+ RRDEE + Q+SPY KT KHPRSLPRSINYLFKEQRLLFILVGILIGST
Sbjct: 3 QLHKQMSVNHRRDEEIPTSQSSPYSPKTLKHPRSLPRSINYLFKEQRLLFILVGILIGST 62
Query: 62 FFILQPILSRLGP--PQELHPFH-ALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLR 118
FFILQP LSRLGP L ++ S +S G +TGRVPVGIGR+RLR
Sbjct: 63 FFILQPSLSRLGPAESTSLITRSVSIAVTDSPPSSSTFNSSGGGGRTGRVPVGIGRKRLR 122
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
IVVTGGAGFVGSHLVDKLI RGDEVIVIDNFFTGRK+NLVH F NPRFELIRHDVVEPIL
Sbjct: 123 IVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPIL 182
Query: 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238
LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA+FLLTSTSEVYGDPL
Sbjct: 183 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPL 242
Query: 239 EHPQKETYWGNVNPIGE 255
EHPQKETYWGNVNPIGE
Sbjct: 243 EHPQKETYWGNVNPIGE 259
|
Length = 436 |
| >gnl|CDD|177856 PLN02206, PLN02206, UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Score = 337 bits (865), Expect = e-115
Identities = 156/256 (60%), Positives = 188/256 (73%), Gaps = 9/256 (3%)
Query: 7 SSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFIL- 65
S + RR EET ++ Y K K + R I Y+ +EQRL+F+LVGI I + F +
Sbjct: 3 SELINRRHEETQPTADA-YYPKPIKPWFVVTRPIRYMLREQRLVFVLVGIAIATLVFTIF 61
Query: 66 ----QPILSRLGPPQE--LHPFHALT-ANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLR 118
QP + P + P + A Q ++ + G G++P+G+ R+ LR
Sbjct: 62 PSSSQPSPYSVDPLSGYGIRPDESYVPAIQAQRKPSLEYLNRIGNSGGKIPLGLKRKGLR 121
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
+VVTGGAGFVGSHLVD+L+ RGD VIV+DNFFTGRK+N++HHF NP FELIRHDVVEPIL
Sbjct: 122 VVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPIL 181
Query: 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238
LEVDQIYHLACPASPVHYK+NPVKTIKTNV+GTLNMLGLAKRVGA+FLLTSTSEVYGDPL
Sbjct: 182 LEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPL 241
Query: 239 EHPQKETYWGNVNPIG 254
+HPQ ETYWGNVNPIG
Sbjct: 242 QHPQVETYWGNVNPIG 257
|
Length = 442 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 280 bits (718), Expect = 1e-94
Identities = 103/137 (75%), Positives = 119/137 (86%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
RI++TGGAGF+GSHL D+L++ G EVI +DNFFTGRK N+ H +P FE IRHDV EP+
Sbjct: 2 RILITGGAGFLGSHLCDRLLEDGHEVICVDNFFTGRKRNIEHLIGHPNFEFIRHDVTEPL 61
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237
LEVDQIYHLACPASPVHY+YNP+KT+KTNV+GTLNMLGLAKRVGA+ LL STSEVYGDP
Sbjct: 62 YLEVDQIYHLACPASPVHYQYNPIKTLKTNVLGTLNMLGLAKRVGARVLLASTSEVYGDP 121
Query: 238 LEHPQKETYWGNVNPIG 254
HPQ E+YWGNVNPIG
Sbjct: 122 EVHPQPESYWGNVNPIG 138
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 1e-38
Identities = 61/138 (44%), Positives = 86/138 (62%), Gaps = 8/138 (5%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
R++VTGGAGF+GSHLV++L++RG EVIV+DN TG+K+NL P + I D+
Sbjct: 1 RVLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKKENLPEV--KPNVKFIEGDIRDDE 58
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTS 231
VE VD ++H A AS +P+K + NV+GTLN+L A++ G K F+ S+S
Sbjct: 59 LVEFAFEGVDYVFHQAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVKRFVYASSS 118
Query: 232 EVYGDPLEHPQKETYWGN 249
VYGDP P+ E + N
Sbjct: 119 SVYGDPPYLPKDEDHPPN 136
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 127 bits (320), Expect = 5e-35
Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 9/136 (6%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP- 176
RI+VTGGAGF+GSHLVD+L++ G+EV+V+DN +GR++N+ F N F ++ D+++
Sbjct: 1 RILVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSSGRRENIEPEFENKAFRFVKRDLLDTA 60
Query: 177 ---ILLEVDQIYHLACPASP-VHYKY-NPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTST 230
+ D ++HLA A+P V +P ++ NV+ T N+L + G K + S+
Sbjct: 61 DKVAKKDGDTVFHLA--ANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRIVFASS 118
Query: 231 SEVYGDPLEHPQKETY 246
S VYG+ P E Y
Sbjct: 119 STVYGEAKVIPTPEDY 134
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 1e-30
Identities = 51/141 (36%), Positives = 73/141 (51%), Gaps = 6/141 (4%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
RI+VTGGAGF+GSHLV++L+ G +V +D G L +L D+V+ +
Sbjct: 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL-SGVEFVVLDLTDRDLVDEL 60
Query: 178 LLEV-DQIYHLACPASPVHYKY-NPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTST-SEV 233
V D + HLA +S +P + + NV GTLN+L A+ G +F+ S+ S V
Sbjct: 61 AKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVV 120
Query: 234 YGDPLEHPQKETYWGNVNPIG 254
YGDP P E G P+
Sbjct: 121 YGDPPPLPIDEDL-GPPRPLN 140
|
Length = 314 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 4e-29
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 33/132 (25%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I+VTGGAGF+GSHLV +L++RG EV+VID
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDRL----------------------------- 31
Query: 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTSEVYGDP 237
D + HLA NP + +TNV+GTLN+L A++ G +F+ S++ VYG P
Sbjct: 32 ---DVVVHLAALVGVPASWDNPDEDFETNVVGTLNLLEAARKAGVKRFVYASSASVYGSP 88
Query: 238 LEHPQKETYWGN 249
P++E
Sbjct: 89 EGLPEEEETPPR 100
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 1e-26
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 12/136 (8%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
++VTG GF+GSHL ++L+ G EV +D + + L+ + + RF I DV
Sbjct: 1 NVLVTGADGFIGSHLTERLLREGHEVRALDIYNSFNSWGLLDNAVHDRFHFISGDVRDAS 60
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTS 231
VE ++ + D ++HLA + + P+ ++TNV GTLN+L A + K + TSTS
Sbjct: 61 EVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNVLEAACVLYRKRVVHTSTS 120
Query: 232 EVYGD------PLEHP 241
EVYG +HP
Sbjct: 121 EVYGTAQDVPIDEDHP 136
|
Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 1e-24
Identities = 48/139 (34%), Positives = 66/139 (47%), Gaps = 20/139 (14%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I+VTGG GF+GSHLV +L+ G EVI R+ R D+ +P
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEVI---VLGRRRRSES---LNTGRIRFHEGDLTDPDA 54
Query: 179 LE-------VDQIYHLACPASPVHYKYN---PVKTIKTNVMGTLNMLGLAKRVGA-KFLL 227
LE D + HL A+ + P I+ NV+GTL +L A+R G +F+
Sbjct: 55 LERLLAEVQPDAVIHL---AAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKRFVF 111
Query: 228 TSTSEVYGDPLEHPQKETY 246
S+SEVYGD + P E
Sbjct: 112 ASSSEVYGDVADPPITEDT 130
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 2e-24
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 15/141 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVID----NFFTGRKDNLVHHFRNPRFELIRHDV 173
R ++TG G GS+L + L+++G EV I +F T R D+L + R L D+
Sbjct: 1 RALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTDRIDHLYIN--KDRITLHYGDL 58
Query: 174 VEPI-LLEV------DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK--RVGAK 224
+ L D+IYHLA + +P T + N +GTLN+L + + A+
Sbjct: 59 TDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDDPEYTAEVNAVGTLNLLEAIRILGLDAR 118
Query: 225 FLLTSTSEVYGDPLEHPQKET 245
F S+SE YG E PQ ET
Sbjct: 119 FYQASSSEEYGKVQELPQSET 139
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 2e-21
Identities = 43/135 (31%), Positives = 75/135 (55%), Gaps = 11/135 (8%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVV 174
+I+VTGGAGF+GS+ V L+++ ++I +D + G +NL +PR+ ++ D+
Sbjct: 2 KILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYAGNLENLEDVSSSPRYRFVKGDIC 61
Query: 175 EPILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFL 226
+ L+ ++D + H A + +P I+TNV+GT +L A++ G +F+
Sbjct: 62 DAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIRTNVLGTYTLLEAARKYGVKRFV 121
Query: 227 LTSTSEVYGDPLEHP 241
ST EVYGD L+
Sbjct: 122 HISTDEVYGDLLDDG 136
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 5e-21
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN----FFTGRKDNLVHHFRNPRFELIRHDV 173
R+++TGGAGF+GS+L + +G EVI DN G L + + + D+
Sbjct: 2 RVLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGSFGNLAWLKANREDGGVRFVHGDI 61
Query: 174 -----VEPILLEVDQIYHLACPASPVHYKY--NPVKTIKTNVMGTLNMLGLAKRVG--AK 224
+E + ++D I H A A P +P +TN +GTLN+L A++ A
Sbjct: 62 RNRNDLEDLFEDIDLIIHTA--AQPSVTTSASSPRLDFETNALGTLNVLEAARQHAPNAP 119
Query: 225 FLLTSTSEVYGDPLEHPQKETY 246
F+ TST++VYGD P
Sbjct: 120 FIFTSTNKVYGD---LPNYLPL 138
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 5e-19
Identities = 48/149 (32%), Positives = 73/149 (48%), Gaps = 27/149 (18%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRN------PRFELIRH 171
+I+VTG AGF+G H+ +L++RGDEV+ IDN D + R F+ ++
Sbjct: 2 KILVTGAAGFIGFHVAKRLLERGDEVVGIDN-LNDYYDVRLKEARLELLGKSGGFKFVKG 60
Query: 172 DVVEPILL-------EVDQIYHLACPASPVHYKY-NPVKTIKTNVMGTLNMLGLAKRVG- 222
D+ + L E D + HLA A V Y NP + +N++G LN+L L + G
Sbjct: 61 DLEDREALRRLFKDHEFDAVIHLAAQAG-VRYSLENPHAYVDSNIVGFLNLLELCRHFGV 119
Query: 223 AKFLLTSTSEVYG----------DPLEHP 241
+ S+S VYG D ++HP
Sbjct: 120 KHLVYASSSSVYGLNTKMPFSEDDRVDHP 148
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 2e-18
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 12/131 (9%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVV 174
+I+VTGGAGF+GS+ V ++++ D V+ +D + G +NL +PR+ ++ D+
Sbjct: 2 KILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDIC 61
Query: 175 EPILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR--VGAKF 225
+ L++ D + H A + P I+TNV+GT +L A++ +F
Sbjct: 62 DRELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRF 121
Query: 226 LLTSTSEVYGD 236
ST EVYGD
Sbjct: 122 HHISTDEVYGD 132
|
Length = 340 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-18
Identities = 49/128 (38%), Positives = 71/128 (55%), Gaps = 13/128 (10%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEV--IVIDNFFT--GRKDNLVHHFRNPRFELIRHDVV 174
++VTG GF+GSHLV+ L+ +G EV V+ N F G D ++ + E++ D+
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNSFNSWGWLDTSPPEVKD-KIEVVTGDIR 59
Query: 175 EPILLE-----VDQIYHLAC-PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLL 227
+P + D ++HLA A P Y P + TNV GTLN+L A+ +G K +
Sbjct: 60 DPDSVRKAMKGCDVVFHLAALIAIPYSYI-APDSYVDTNVTGTLNVLQAARDLGVEKVVH 118
Query: 228 TSTSEVYG 235
TSTSEVYG
Sbjct: 119 TSTSEVYG 126
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 8e-18
Identities = 48/140 (34%), Positives = 80/140 (57%), Gaps = 21/140 (15%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+++++TGGAG +GSHL++ L++RG +V+VIDNF TGR+++L H P ++ + +
Sbjct: 1 MKVLITGGAGQIGSHLIEHLLERGHQVVVIDNFATGRREHLPDH---PNLTVVEGSIADK 57
Query: 177 ILLEVDQIYHLACPASPVH----YKYNP---VKTIKTNVMGTLNMLGLAKRVGAK-FLLT 228
L VD+++ P + VH YK +P + TNV+G N++ AK+ G K +
Sbjct: 58 AL--VDKLFGDFKPDAVVHTAAAYK-DPDDWYEDTLTNVVGGANVVQAAKKAGVKRLIYF 114
Query: 229 STSEVYGDP-------LEHP 241
T+ YG L+HP
Sbjct: 115 QTALCYGLKPMQQPIRLDHP 134
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 1e-17
Identities = 50/149 (33%), Positives = 77/149 (51%), Gaps = 17/149 (11%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+++VTGGAG++GSH V +L+ G EV+V+DN G K L +F+ D+++
Sbjct: 2 KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIAL----LKLQFKFYEGDLLDRA 57
Query: 178 LLEVDQIYHLACPASPVH---YKY------NPVKTIKTNVMGTLNMLGLAKRVGAK-FLL 227
LL ++ + VH NP+K NV+GTLN++ + G K F+
Sbjct: 58 LL--TAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIF 115
Query: 228 TSTSEVYGDPLEHPQKETY-WGNVNPIGE 255
+ST+ VYG+P P ET +NP G
Sbjct: 116 SSTAAVYGEPTTSPISETSPLAPINPYGR 144
|
Length = 329 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 2e-17
Identities = 49/147 (33%), Positives = 80/147 (54%), Gaps = 9/147 (6%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+I+VTGGAG++GSH V +L++ G EV+++DN G ++ L R + D+ +
Sbjct: 1 KILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPRGERITPVTFVEGDLRDRE 60
Query: 178 LL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTS 229
LL ++D + H A + P+K + NV+GTLN+L ++ G K F+ +S
Sbjct: 61 LLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKKFIFSS 120
Query: 230 TSEVYGDPLEHPQKETY-WGNVNPIGE 255
++ VYG+P P E G +NP G
Sbjct: 121 SAAVYGEPSSIPISEDSPLGPINPYGR 147
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 4e-17
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 32/158 (20%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+++VTGGAG++GSH V +L++ G +V+V+DN G ++ + R E D+ +
Sbjct: 1 KVLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSNGHRE-ALPRIEKIRIEFYEGDIRDRA 59
Query: 178 LLE-------VDQIYHLACPASPVHYKY------NPVKTIKTNVMGTLNMLGLAKRVGAK 224
L+ +D + H A K P+K NV+GTLN+L + G K
Sbjct: 60 ALDKVFAEHKIDAVIHFAA------LKAVGESVQKPLKYYDNNVVGTLNLLEAMRAHGVK 113
Query: 225 -FLLTSTSEVYGDPL------EHPQKETYWGNVNPIGE 255
F+ +S++ VYG+P E P T NP G
Sbjct: 114 NFVFSSSAAVYGEPETVPITEEAPLNPT-----NPYGR 146
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 7e-16
Identities = 33/120 (27%), Positives = 49/120 (40%), Gaps = 2/120 (1%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
R +VTG GF+GSHL ++L G V D +L +
Sbjct: 1 QRALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDDEFHLVDLREMENCLK 60
Query: 177 ILLEVDQIYHLACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVY 234
VD ++HLA + Y + N + N + NML A+ G + FL S++ VY
Sbjct: 61 ATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERFLFASSACVY 120
|
This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 7e-15
Identities = 42/136 (30%), Positives = 63/136 (46%), Gaps = 15/136 (11%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELI------RH 171
R+++ GG GF+GSHLVD L++ G +V V D R + + I R
Sbjct: 1 RVLIVGGNGFIGSHLVDALLEEGPQVRVFD-----RSIPP-YELPLGGVDYIKGDYENRA 54
Query: 172 DVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK--FLLTS 229
D+ L+ +D + HLA +P NP+ I+TNV T+ +L G +S
Sbjct: 55 DLES-ALVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKIIFASS 113
Query: 230 TSEVYGDPLEHPQKET 245
VYG P + P E+
Sbjct: 114 GGTVYGVPEQLPISES 129
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 9e-15
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 17/144 (11%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVID---NFFTGRKDNLVH--HFRNPRFELIRHD 172
++TG G GS+L + L+++G EV I + F + +L H +PR L D
Sbjct: 4 VALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGD 63
Query: 173 VVEP-----ILLEV--DQIYHLACPAS-PVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-- 222
+ + IL EV D+IY+LA + V ++ P T + +GTL +L + +G
Sbjct: 64 LTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFE-QPEYTADVDAIGTLRLLEAIRILGEK 122
Query: 223 -AKFLLTSTSEVYGDPLEHPQKET 245
+F STSE+YG E PQKET
Sbjct: 123 KTRFYQASTSELYGLVQEIPQKET 146
|
Length = 345 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-14
Identities = 45/131 (34%), Positives = 67/131 (51%), Gaps = 12/131 (9%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDV- 173
RI+VTGGAGF+GS+ V +++ EVIV+D + G +NL NPR+ ++ D+
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIG 60
Query: 174 ----VEPILLE--VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR--VGAKF 225
V + E D + H A + P I+TNV+GT +L ++ +F
Sbjct: 61 DRELVSRLFTEHQPDAVVHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRF 120
Query: 226 LLTSTSEVYGD 236
ST EVYGD
Sbjct: 121 HHISTDEVYGD 131
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|187559 cd05248, ADP_GME_SDR_e, ADP-L-glycero-D-mannoheptose 6-epimerase (GME), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-14
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 15/132 (11%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRK-DNLV----HHF--RNPRFELIR 170
I+VTGGAGF+GS+LV L +RG +++V+DN G K NLV + ++ + +R
Sbjct: 2 IIVTGGAGFIGSNLVKALNERGITDILVVDNLSNGEKFKNLVGLKIADYIDKDDFKDWVR 61
Query: 171 HDVVEPILLEVDQIYHL-ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTS 229
+++ I+H AC + + + N T +L +F+ S
Sbjct: 62 KGDENF---KIEAIFHQGACSDTTET---DGKYMMDNNYQYTKELLHYCLEKKIRFIYAS 115
Query: 230 TSEVYGDPLEHP 241
++ VYG+
Sbjct: 116 SAAVYGNGSLGF 127
|
This subgroup contains ADP-L-glycero-D-mannoheptose 6-epimerase, an extended SDR, which catalyzes the NAD-dependent interconversion of ADP-D-glycero-D-mannoheptose and ADP-L-glycero-D-mannoheptose. This subgroup has the canonical active site tetrad and NAD(P)-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 317 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 8e-14
Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I+VTG GF+GS+LV L+ +G V R + E++ D+ +
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRA-----LVRSGSDAVLLDGLPVEVVEGDLTDAAS 55
Query: 179 L-----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
L D+++HLA S + +TNV GT N+L A G + + TS+
Sbjct: 56 LAAAMKGCDRVFHLAAFTSLWAKDRK--ELYRTNVEGTRNVLDAALEAGVRRVVHTSSIA 113
Query: 233 VYGDP 237
G P
Sbjct: 114 ALGGP 118
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|233775 TIGR02197, heptose_epim, ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 7e-13
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 20/129 (15%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
I+VTGGAGF+GS+LV L +RG +++V+DN G H F N +I + +
Sbjct: 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDG------HKFLNLADLVIADYIDKED 54
Query: 178 LLE---------VDQIYHL-ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL 227
L+ ++ I+H AC + + ++ N + +L G F+
Sbjct: 55 FLDRLEKGAFGKIEAIFHQGACSDTTET---DGEYMMENNYQYSKRLLDWCAEKGIPFIY 111
Query: 228 TSTSEVYGD 236
S++ YGD
Sbjct: 112 ASSAATYGD 120
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 314 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 6e-12
Identities = 41/133 (30%), Positives = 59/133 (44%), Gaps = 28/133 (21%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDN-----FFTGRKDNLVHHFRNPRFELIRH 171
I+VTGGAG +GS LV +++ G ++IV D R+ F + + I
Sbjct: 4 TILVTGGAGSIGSELVRQILKFGPKKLIVFDRDENKLHELVRELR--SRFPHDKLRFIIG 61
Query: 172 DVVEPILL-------EVDQIYHLACPASPVHYK------YNPVKTIKTNVMGTLNMLGLA 218
DV + L D ++H A K NP + IKTNV+GT N++ A
Sbjct: 62 DVRDKERLRRAFKERGPDIVFHAAA------LKHVPSMEDNPEEAIKTNVLGTKNVIDAA 115
Query: 219 KRVG-AKFLLTST 230
G KF+ ST
Sbjct: 116 IENGVEKFVCIST 128
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-11
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 27/146 (18%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVI-------VIDNFF-TGRKDNLVHHFRNPRFELI 169
R++VTG GF GS L L + G +VI N F DN + R I
Sbjct: 6 RVLVTGHTGFKGSWLSLWLQELGAKVIGYSLDPPTNPNLFELANLDNKISSTRGD----I 61
Query: 170 R-HDVVEPILLEV--DQIYHLACPASP-VHYKY-NPVKTIKTNVMGTLNMLGLAKRVG-A 223
R + + + E + ++HLA A P V Y +PV+T +TNVMGT+N+L + G
Sbjct: 62 RDLNALREAIREYEPEIVFHLA--AQPLVRLSYKDPVETFETNVMGTVNLLEAIRETGSV 119
Query: 224 K-FLLTSTSEVYGDPLEHPQKETYWG 248
K + ++ + Y + KE WG
Sbjct: 120 KAVVNVTSDKCYEN------KEWGWG 139
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 4e-11
Identities = 42/159 (26%), Positives = 67/159 (42%), Gaps = 36/159 (22%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR----KDNLVH----HFRNPRFELI 169
++VTG GF+ SH+V++L+ G +V T R L N R E +
Sbjct: 1 LVLVTGATGFIASHIVEQLLKAGYKVR-----GTVRSLSKSAKLKALLKAAGYNDRLEFV 55
Query: 170 RHDVVEPI---------LLEVDQIYHLACPASPVHYKYNPVKT--IKTNVMGTLNMLGLA 218
+V+ + L VD + H+ ASP + + I V GTLN+L A
Sbjct: 56 ---IVDDLTAPNAWDEALKGVDYVIHV---ASPFPFTGPDAEDDVIDPAVEGTLNVLEAA 109
Query: 219 KRVGA--KFLLTSTSEVYGDPLEHPQKETY----WGNVN 251
K G+ + +LTS+ GDP + + W ++
Sbjct: 110 KAAGSVKRVVLTSSVAAVGDPTAEDPGKVFTEEDWNDLT 148
|
This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301 |
| >gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 8e-11
Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 33/153 (21%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIV----------------IDNFFTGRKDNLVHHFRNP 164
+TG GF+G L++KL+ EV + + +
Sbjct: 1 LTGATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKAL--E 58
Query: 165 RFELIRHDVVEP-----------ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLN 213
R + D+ EP + EVD I H A A+ V++ TNV+GT
Sbjct: 59 RIIPVAGDLSEPNLGLSDEDFQELAEEVDVIIHNA--AT-VNFVEPYSDLRATNVLGTRE 115
Query: 214 MLGLAKRVGAK-FLLTSTSEVYGDPLEHPQKET 245
+L LAK++ F ST+ V G+ +++
Sbjct: 116 VLRLAKQMKKLPFHHVSTAYVNGERGGLLEEKP 148
|
This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245 |
| >gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 1e-10
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 26/148 (17%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVID---NFFTGRKDNLVHHFRNPRFELIRHDVVE 175
+ VTGG GF+G HLV +L++ G +V+V+ + + R ++ D+ +
Sbjct: 1 VFVTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDLTQ 60
Query: 176 PIL-----------LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK 224
P L +VD + H A AS ++ +TN+ GT ++L LA R+ +
Sbjct: 61 PNLGLSAAASRELAGKVDHVIHCA--AS-YDFQAPNEDAWRTNIDGTEHVLELAARLDIQ 117
Query: 225 -FLLTSTSEVYG--------DPLEHPQK 243
F ST+ V G L Q
Sbjct: 118 RFHYVSTAYVAGNREGNIRETELNPGQN 145
|
This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 11/125 (8%)
Query: 120 VVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
+VTGG GF+G H+V L+ G+ EV V D F+ + + I DV
Sbjct: 1 LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSKLQVITY--IEGDVTDKQ 58
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-TSTS 231
+ L D + H A V K +K NV GT N+L + G + L+ TS+
Sbjct: 59 DLRRALQGSDVVIHTAA-IIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLVYTSSM 117
Query: 232 EVYGD 236
EV G
Sbjct: 118 EVVGP 122
|
The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280 |
| >gnl|CDD|185103 PRK15181, PRK15181, Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 2e-10
Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 12/143 (8%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL------VHHFRNPRFELIRH 171
R ++TG AGF+GS L+++L+ VI +DNF TG + NL V + RF I+
Sbjct: 17 RWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQG 76
Query: 172 DV-----VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKF 225
D+ + VD + H A S +P+ T N+ G LNML A+ + F
Sbjct: 77 DIRKFTDCQKACKNVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSF 136
Query: 226 LLTSTSEVYGDPLEHPQKETYWG 248
++S YGD + P+ E G
Sbjct: 137 TYAASSSTYGDHPDLPKIEERIG 159
|
Length = 348 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 4e-10
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 14/142 (9%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVV 174
+R++VTGG+G++GSH +L+ G +V+++DN ++ L + + D+
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIR 60
Query: 175 EPILLEVDQIYHLACPASPVHYK---------YNPVKTIKTNVMGTLNMLGLAKRVGAK- 224
LL +I H + +H+ P++ NV GTL ++ + K
Sbjct: 61 NEALL--TEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN 118
Query: 225 FLLTSTSEVYGDPLEHPQKETY 246
+ +S++ VYGD + P E++
Sbjct: 119 LIFSSSATVYGDQPKIPYVESF 140
|
Length = 338 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 5e-10
Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 20/144 (13%)
Query: 117 LRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVV 174
++I+VTGGAGF+GS +V +I + D V+ +D + G ++L + R+ D+
Sbjct: 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADIC 60
Query: 175 EPILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLA--------- 218
+ L+ D + HLA + P I+TN++GT +L A
Sbjct: 61 DRAELDRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDE 120
Query: 219 -KRVGAKFLLTSTSEVYGDPLEHP 241
K+ +F ST EVYGD L HP
Sbjct: 121 DKKNAFRFHHISTDEVYGD-LPHP 143
|
Length = 352 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 9e-10
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 19/138 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVE 175
+I++TGGAGF+GS LV +I+ D V+V+D + G +L ++ RF + D+ +
Sbjct: 3 KILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICD 62
Query: 176 PILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLA---------- 218
L D + HLA + P I+TN++GT +L A
Sbjct: 63 RAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTED 122
Query: 219 KRVGAKFLLTSTSEVYGD 236
K+ +F ST EVYGD
Sbjct: 123 KKSAFRFHHISTDEVYGD 140
|
Length = 355 |
| >gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-09
Identities = 39/150 (26%), Positives = 63/150 (42%), Gaps = 33/150 (22%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP- 176
+++VTG GF+G LVDKL+ RG+EV + V + N ++ ++ +
Sbjct: 1 KVLVTGANGFIGRALVDKLLSRGEEVRI-----------AVRNAENAEPSVVLAELPDID 49
Query: 177 ----ILLEVDQIYHLACPASPVHYKYNPVKT-----IKTNVMGTLNMLGLAKRVGAK-FL 226
+ L VD + HL A+ VH + K N T + A R G K F+
Sbjct: 50 SFTDLFLGVDAVVHL---AARVHVMNDQGADPLSDYRKVNTELTRRLARAAARQGVKRFV 106
Query: 227 LTSTSEVYG-----DPLEH---PQKETYWG 248
S+ +V G P + P + +G
Sbjct: 107 FLSSVKVNGEGTVGAPFDETDPPAPQDAYG 136
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303 |
| >gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-09
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFEL----IRH- 171
++VTGG+GF G LV +L++R G V D G + +++P E I
Sbjct: 1 SVLVTGGSGFFGERLVKQLLERGGTYVRSFDIAPPGEA---LSAWQHPNIEFLKGDITDR 57
Query: 172 DVVEPILLEVDQIYHLACPASPVHYK--YNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLT 228
+ VE L D ++H A + Y V NV GT N+L +R G KF+ T
Sbjct: 58 NDVEQALSGADCVFHTAAIVPLAGPRDLYWEV-----NVGGTQNVLDACQRCGVQKFVYT 112
Query: 229 STSEVYG 235
S+S V
Sbjct: 113 SSSSVIF 119
|
Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 41/155 (26%)
Query: 106 GRVPVGIGRRRL-------RIVVTGGAGFVGSHLVDKLIDRGDEVIV-----------ID 147
GR PV + + ++VTGG G +GS L +++ + I+ ID
Sbjct: 233 GRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLID 292
Query: 148 NFFTGRKDNLVHHFRNPRFEL--IR-HDVVEPIL--LEVDQIYHLACPASPVHYK----- 197
+ L RF + +R D VE + +VD ++H A K
Sbjct: 293 MELREKFPEL-----KLRFYIGDVRDRDRVERAMEGHKVDIVFHAAA------LKHVPLV 341
Query: 198 -YNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTST 230
YNP + IKTNV+GT N+ A + G KF+L ST
Sbjct: 342 EYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLIST 376
|
Length = 588 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 3e-09
Identities = 50/153 (32%), Positives = 73/153 (47%), Gaps = 35/153 (22%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF-------------FTGRK-DNLVHHFRN 163
I+VTGGAG++GSH V +L+ G +V+VIDN G DNLV H
Sbjct: 7 TILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFH--- 63
Query: 164 PRFELIRHDVVEPILLE--VDQIYHLA-------CPASPVHYKYNPVKTIKTNVMGTLNM 214
+ +L + +E + D + H A A P+ Y N N++GT+N+
Sbjct: 64 -KVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDN-------NLVGTINL 115
Query: 215 LGLAKRVGAKFLLTSTS-EVYGDPLEHPQKETY 246
L + + G K L+ S+S VYG P E P E +
Sbjct: 116 LEVMAKHGCKKLVFSSSATVYGQPEEVPCTEEF 148
|
Length = 352 |
| >gnl|CDD|233427 TIGR01472, gmd, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 8e-09
Identities = 47/146 (32%), Positives = 70/146 (47%), Gaps = 24/146 (16%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVI----DNFFTGRKDNLV---HHFRNPRFELIRHDV 173
+TG G GS+L + L+++G EV + +F T R +++ H+ R +L D+
Sbjct: 5 ITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDL 64
Query: 174 VEPILL-------EVDQIYHLACPASPVHYKYN-PVKTIKTNVMGTLNML------GLAK 219
+ L + +IY+LA S V + P T + +GTL +L GL K
Sbjct: 65 TDSSNLRRIIDEIKPTEIYNLAA-QSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIK 123
Query: 220 RVGAKFLLTSTSEVYGDPLEHPQKET 245
V KF STSE+YG E PQ ET
Sbjct: 124 SV--KFYQASTSELYGKVQEIPQNET 147
|
Alternate name: GDP-D-mannose dehydratase. This enzyme converts GDP-mannose to GDP-4-dehydro-6-deoxy-D-mannose, the first of three steps for the conversion of GDP-mannose to GDP-fucose in animals, plants, and bacteria. In bacteria, GDP-L-fucose acts as a precursor of surface antigens such as the extracellular polysaccharide colanic acid of E. coli. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 343 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-08
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 23/133 (17%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVI--------VIDNF-FTGRKDNLVHHFRNPR-FE 167
+++VTG GF GS L L++ G EV + F + HF + R
Sbjct: 6 KVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAA 65
Query: 168 LIRHDV--VEPILLEVDQIYHLACPASP-VHYKY-NPVKTIKTNVMGTLNMLGLAKRVGA 223
+R + +P + ++HLA A P V Y +P++T +TNVMGT+N+L + +G+
Sbjct: 66 KLRKAIAEFKP-----EIVFHLA--AQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGS 118
Query: 224 K--FLLTSTSEVY 234
+ ++ + Y
Sbjct: 119 VKAVVNVTSDKCY 131
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|187546 cd05235, SDR_e1, extended (e) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-08
Identities = 29/127 (22%), Positives = 53/127 (41%), Gaps = 29/127 (22%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIV---------------IDNFFTGRKDNLVHHFR 162
+++TG GF+G++L+ +L+ R + + + + NL
Sbjct: 1 TVLLTGATGFLGAYLLRELLKRKNVSKIYCLVRAKDEEAALERLIDNLKEYGLNLWDELE 60
Query: 163 NPRFELIRHDVVEPIL-----------LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGT 211
R +++ D+ +P L EVD I H A+ V++ Y + NV+GT
Sbjct: 61 LSRIKVVVGDLSKPNLGLSDDDYQELAEEVDVIIH--NGAN-VNWVYPYEELKPANVLGT 117
Query: 212 LNMLGLA 218
+L LA
Sbjct: 118 KELLKLA 124
|
This family consists of an SDR module of multidomain proteins identified as putative polyketide sythases fatty acid synthases (FAS), and nonribosomal peptide synthases, among others. However, unlike the usual ketoreductase modules of FAS and polyketide synthase, these domains are related to the extended SDRs, and have canonical NAD(P)-binding motifs and an active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 290 |
| >gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-08
Identities = 34/140 (24%), Positives = 53/140 (37%), Gaps = 32/140 (22%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+I+VTG G VGS +V L RG E +V F K+ +L + V
Sbjct: 1 KILVTGHRGLVGSAIVRVLARRGYENVV----FRTSKE----------LDLTDQEAVRAF 46
Query: 178 LLEV--DQIYHLA--------CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFL 226
+ D + HLA P + + N++ N++ A R G K +
Sbjct: 47 FEKEKPDYVIHLAAKVGGIVANMTYPADFLRD-------NLLINDNVIHAAHRFGVKKLV 99
Query: 227 LTSTSEVYGDPLEHPQKETY 246
+S +Y D P E+
Sbjct: 100 FLGSSCIYPDLAPQPIDESD 119
|
GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 7e-08
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 26/131 (19%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVI---DNF--FTGRKDNLVHHFRNP--RFEL--I 169
++VTGG G +GS L +++ + I++ D F + R++ L + +P RF + +
Sbjct: 1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRDEFKLYEIRQE-LRQEYNDPKLRFFIGDV 59
Query: 170 R-HDVVEPIL--LEVDQIYHLACPASPVHYK------YNPVKTIKTNVMGTLNMLGLAKR 220
R + +E + VD ++H A K YNP++ IKTNV+GT N+ A
Sbjct: 60 RDRERLERAMEQHGVDTVFHAAA------LKHVPLVEYNPMEAIKTNVLGTENVAEAAIE 113
Query: 221 VGAK-FLLTST 230
G + F+L ST
Sbjct: 114 NGVEKFVLIST 124
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|187549 cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 7e-08
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNF------FTGRKDNLVHHFRNPRFELI 169
++++TG +GFVG L ++L+ + +I+ID R + P
Sbjct: 2 KVLITGASGFVGQRLAERLLSDVPNERLILIDVVSPKAPSGAPRVTQIAGDLAVPA---- 57
Query: 170 RHDVVEPILLEV-DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFL 226
++E + D ++HLA S + + + NV GT N+L ++ G +F+
Sbjct: 58 ---LIEALANGRPDVVFHLAAIVSG-GAEADFDLGYRVNVDGTRNLLEALRKNGPKPRFV 113
Query: 227 LTSTSEVYGDPLEHP 241
TS+ VYG PL +P
Sbjct: 114 FTSSLAVYGLPLPNP 128
|
Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 9e-08
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 23/149 (15%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVI--VIDNFFTGRKDNLVHHFR-----NPRFELIRHDV 173
VTG +GF+GS LV +L+ RG V V D + V H R +L + D+
Sbjct: 3 VTGASGFIGSWLVKRLLQRGYTVRATVRDP----GDEKKVAHLLELEGAKERLKLFKADL 58
Query: 174 VEPILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFL 226
++ + D ++H+A P + + I+ V GTLN+L + + + +
Sbjct: 59 LDYGSFDAAIDGCDGVFHVASPVDF-DSEDPEEEMIEPAVKGTLNVLEACAKAKSVKRVV 117
Query: 227 LT-STSEVYGDPLEHPQK---ETYWGNVN 251
T S + V +P K E+ W +++
Sbjct: 118 FTSSVAAVVWNPNRGEGKVVDESCWSDLD 146
|
This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 1e-07
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 20/124 (16%)
Query: 121 VTGGAGFVGSHLVDKLIDRG----------DEVIVIDNFFTGRKDNLVHHFRNPRFELIR 170
VTG +GFV SH+V++L++RG +V ++ D +L
Sbjct: 3 VTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVN--HLLDLDAKPGRLELAVADLTD 60
Query: 171 HDVVEPILLEVDQIYHLACPASPVHY--KYNPVKTIKTNVMGTLNMLGLAKRVGA--KFL 226
+ ++ ++H+ A+PV + K P + IK + GTLN L A + +F+
Sbjct: 61 EQSFDEVIKGCAGVFHV---ATPVSFSSKD-PNEVIKPAIGGTLNALKAAAAAKSVKRFV 116
Query: 227 LTST 230
LTS+
Sbjct: 117 LTSS 120
|
This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295 |
| >gnl|CDD|236156 PRK08125, PRK08125, bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 13/142 (9%)
Query: 102 GAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH 160
GA+ P +RR R+++ G GF+G+HL ++L+ + EV +D + +
Sbjct: 301 GARLNSKPACSAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLD-----IGSDAISR 355
Query: 161 FR-NPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLN 213
F +PRF + D+ +E + + D + L A+P+ Y NP++ + + L
Sbjct: 356 FLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLK 415
Query: 214 MLGLAKRVGAKFLLTSTSEVYG 235
++ + + + STSEVYG
Sbjct: 416 IIRYCVKYNKRIIFPSTSEVYG 437
|
Length = 660 |
| >gnl|CDD|178047 PLN02427, PLN02427, UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 37/142 (26%), Positives = 65/142 (45%), Gaps = 14/142 (9%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNP---RFEL----I 169
L I + G GF+GSHL +KL+ ++ + + + +L+ P R + I
Sbjct: 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINI 74
Query: 170 RHDV-VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLT 228
+HD +E ++ D +LA +P Y P+ TI +N + L ++ + +
Sbjct: 75 KHDSRLEGLIKMADLTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHF 134
Query: 229 STSEVYGD------PLEHPQKE 244
ST EVYG P +HP ++
Sbjct: 135 STCEVYGKTIGSFLPKDHPLRQ 156
|
Length = 386 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-07
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 17/132 (12%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I++ G GF+G L +L+++G EV ++ R + ++ D+ +
Sbjct: 1 ILILGATGFIGRALARELLEQGHEVTLLV-----RNTKRLSKEDQEPVAVVEGDLRDLDS 55
Query: 179 L-----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
L VD + HLA +P + + +V GT N+L AK G K F+ S+
Sbjct: 56 LSDAVQGVDVVIHLA--GAPRDTRDF----CEVDVEGTRNVLEAAKEAGVKHFIFISSLG 109
Query: 233 VYGDPLEHPQKE 244
YGD E +
Sbjct: 110 AYGDLHEETEPS 121
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
| >gnl|CDD|187580 cd05272, TDH_SDR_e, L-threonine dehydrogenase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 6e-07
Identities = 40/129 (31%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFRNPRFEL------- 168
RI++TGG G +GS L L R D VI D RK H + FE
Sbjct: 1 RILITGGLGQIGSELAKLLRKRYGKDNVIASDI----RKPP-AHVVLSGPFEYLDVLDFK 55
Query: 169 -IRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL 227
+ VV ++ I HLA S V K NP N+ G N+L LA+ + +
Sbjct: 56 SLEEIVVN---HKITWIIHLAALLSAVGEK-NPPLAWDVNMNGLHNVLELAREHNLRIFV 111
Query: 228 TSTSEVYGD 236
ST +G
Sbjct: 112 PSTIGAFGP 120
|
This subgroup contains members identified as L-threonine dehydrogenase (TDH). TDH catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. This group is distinct from TDHs that are members of the medium chain dehydrogenase/reductase family. This group has the NAD-binding motif and active site tetrad of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 308 |
| >gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 19/139 (13%)
Query: 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF-------EL 168
+LRI +TG GF+ SH+ +L G +I D K N H F +L
Sbjct: 21 KLRICITGAGGFIASHIARRLKAEGHYIIASD-----WKKN--EHMSEDMFCHEFHLVDL 73
Query: 169 IRHDVVEPILLEVDQIYHLACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGAK-FL 226
+ + VD +++LA + + + N + N M + NML A+ G K F
Sbjct: 74 RVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFF 133
Query: 227 LTSTSEVYGDPLEHPQKET 245
S++ +Y E Q ET
Sbjct: 134 YASSACIYP---EFKQLET 149
|
Length = 370 |
| >gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 38/125 (30%), Positives = 59/125 (47%), Gaps = 17/125 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV--- 173
+V GG+GF+G HLV++L+ RG+ V V D T D + R + D+
Sbjct: 1 SCLVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELD----PSSSGRVQFHTGDLTDP 56
Query: 174 --VEPILLE--VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLT 228
+E E + ++H ASP H N K NV GT N++ ++ G K + T
Sbjct: 57 QDLEKAFNEKGPNVVFHT---ASPDH-GSNDDLYYKVNVQGTRNVIEACRKCGVKKLVYT 112
Query: 229 STSEV 233
S++ V
Sbjct: 113 SSASV 117
|
This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335 |
| >gnl|CDD|178259 PLN02653, PLN02653, GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 43/152 (28%), Positives = 61/152 (40%), Gaps = 36/152 (23%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVI----DNFFTGRKDNLVH--HFRNPRFELIRH--- 171
+TG G GS+L + L+ +G EV I NF T R D++ H R +L H
Sbjct: 11 ITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKL--HYGD 68
Query: 172 -----------DVVEPILLEVDQIYHLACPASPVHYKY-NPVKTIKTNVMGTLNML---- 215
D ++P D++Y+LA S V + P T G L +L
Sbjct: 69 LSDASSLRRWLDDIKP-----DEVYNLAA-QSHVAVSFEMPDYTADVVATGALRLLEAVR 122
Query: 216 --GLAKRVGAKFLLTSTSEVYGDPLEHPQKET 245
G K+ +SE+YG PQ ET
Sbjct: 123 LHGQETGRQIKYYQAGSSEMYGSTPP-PQSET 153
|
Length = 340 |
| >gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 32/153 (20%), Positives = 52/153 (33%), Gaps = 29/153 (18%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR------------------------GDEVIVIDNFFTGR 153
+++TG GF+G++L+ +L+DR D D R
Sbjct: 2 NVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADR 61
Query: 154 KDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLN 213
+ + P L E + VD I H A+ V++ + + NV+GT
Sbjct: 62 VEVVAGDLAEPDLGLSERTWQE-LAENVDLIIH---NAALVNHVFPYSELRGANVLGTAE 117
Query: 214 MLGLAKRVGAKFL-LTSTSEVYGDPLEHPQKET 245
+L LA K L S+ V
Sbjct: 118 VLRLAATGKPKPLHYVSSISVGETEYYSNFTVD 150
|
Length = 382 |
| >gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 39/163 (23%), Positives = 68/163 (41%), Gaps = 20/163 (12%)
Query: 120 VVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNP-RFELIRHDV-- 173
+VTGG GF+G H++ L++R + E+ V+D F + I D+
Sbjct: 3 LVTGGGGFLGQHIIRLLLERKEELKEIRVLDKAFGPELIEHFEKSQGKTYVTDIEGDIKD 62
Query: 174 VEPILLE---VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL-TS 229
+ + V + H A V N + + NV GT +L + K L+ TS
Sbjct: 63 LSFLFRACQGVSVVIHTAAIVD-VFGPPNYEELEEVNVNGTQAVLEACVQNNVKRLVYTS 121
Query: 230 TSEV-----YGDPLEHPQKETYWGNVNPIG----ELLAATAVV 263
+ EV G P+ + ++T + + + +LLA V+
Sbjct: 122 SIEVAGPNFKGRPIFNGVEDTPYEDTSTPPYASSKLLAENIVL 164
|
This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354 |
| >gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-06
Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 30/137 (21%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
++I++TG G +G+ L + + EVI D ++ D V
Sbjct: 1 MKILITGANGQLGTELR-RALPGEFEVIATDR---------------AELDITDPDAVLE 44
Query: 177 ILLEV--DQIYHLA------CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLT 228
++ E D + + A S P N G N+ A VGA+ +
Sbjct: 45 VIRETRPDVVINAAAYTAVDKAES------EPELAFAVNATGAENLARAAAEVGARLVHI 98
Query: 229 STSEVYGDPLEHPQKET 245
ST V+ P KET
Sbjct: 99 STDYVFDGEKGGPYKET 115
|
Length = 281 |
| >gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 37/130 (28%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 119 IVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVE 175
I++TG AGF+ SH+ ++LI +++V+D + NL +P F+ ++ D+
Sbjct: 9 ILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIAS 68
Query: 176 PILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFL 226
L+ +D I H A + N + K N+ GT +L K G +F+
Sbjct: 69 ADLVNYLLITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFI 128
Query: 227 LTSTSEVYGD 236
ST EVYG+
Sbjct: 129 HVSTDEVYGE 138
|
Length = 668 |
| >gnl|CDD|187551 cd05240, UDP_G4E_3_SDR_e, UDP-glucose 4 epimerase (G4E), subgroup 3, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 20/126 (15%)
Query: 119 IVVTGGAGFVGSHLVDKL--IDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
I+VTG AG +G L +L R V +D R+ P+ E +R D+ +P
Sbjct: 1 ILVTGAAGGLGRLLARRLAASPRVIGVDGLDR----RRPPGSP----PKVEYVRLDIRDP 52
Query: 177 ------ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFL-LTS 229
E D + HLA P + + + NV GT N+L G + +TS
Sbjct: 53 AAADVFREREADAVVHLAFILDPPR---DGAERHRINVDGTQNVLDACAAAGVPRVVVTS 109
Query: 230 TSEVYG 235
+ VYG
Sbjct: 110 SVAVYG 115
|
Members of this bacterial subgroup are identified as possible sugar epimerases, such as UDP-glucose 4 epimerase. However, while the NAD(P)-binding motif is fairly well conserved, not all members retain the canonical active site tetrad of the extended SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 306 |
| >gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 4e-06
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 18/116 (15%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
++++VTG GFVGS +V L+++G+EV V+ R + + E++ D+ +P
Sbjct: 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLV-----RPTSDRRNLEGLDVEIVEGDLRDP 55
Query: 177 ILLE-----VDQIYHLACPASPVHYKY---NPVKTIKTNVMGTLNMLGLAKRVGAK 224
L ++H+A Y+ +P + NV GT N+L A G +
Sbjct: 56 ASLRKAVAGCRALFHVA-----ADYRLWAPDPEEMYAANVEGTRNLLRAALEAGVE 106
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328 |
| >gnl|CDD|183375 PRK11908, PRK11908, NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 4e-06
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-- 173
++++ G GF+G HL ++++ D EV +D + D L +PR D+
Sbjct: 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM----QTDRLGDLVNHPRMHFFEGDITI 57
Query: 174 ----VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTS 229
+E + + D I L A+P Y P++ + + L ++ A + G + S
Sbjct: 58 NKEWIEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPS 117
Query: 230 TSEVYG 235
TSEVYG
Sbjct: 118 TSEVYG 123
|
Length = 347 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 8e-06
Identities = 36/151 (23%), Positives = 54/151 (35%), Gaps = 30/151 (19%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH----------HFRNPRF 166
+++++ GG G+ G L RG EV ++DN R D + H R +
Sbjct: 1 MKVLILGGDGYCGWPTALHLSKRGHEVCIVDNLVRRRIDVELGLESLTPIASIHERLRAW 60
Query: 167 --------ELIRHDVVEPILL-------EVDQIYHLAC-PASPVHYK--YNPVKTIKTNV 208
E D + L E D + H A ++P + T NV
Sbjct: 61 KELTGKTIEFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMIDREHANYTQHNNV 120
Query: 209 MGTLNMLGLAKRVG--AKFLLTSTSEVYGDP 237
+GTLN+L K + T YG P
Sbjct: 121 IGTLNLLFAIKEFDPDCHLVKLGTMGEYGTP 151
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|182998 PRK11150, rfaD, ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 2/42 (4%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRK-DNLV 158
I+VTGGAGF+GS++V L D+G +++V+DN G K NLV
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLV 43
|
Length = 308 |
| >gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR 162
+I+VTG GFVG +V +L+ RG EV R
Sbjct: 2 KILVTGATGFVGGAVVRELLARGHEVRAA-----VRNPEAAAALA 41
|
Length = 275 |
| >gnl|CDD|200381 TIGR04130, FnlA, UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 2e-05
Identities = 34/123 (27%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE--P 176
+++TGG G G+ ++ + +D + I I + ++D++ + N + + DV +
Sbjct: 7 LLITGGTGSFGNAVLRRFLDTDIKEIRIFSRDEKKQDDMRKKYNNSKLKFYIGDVRDYRS 66
Query: 177 ILLE---VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNML--GLAKRVGAKFLLTSTS 231
IL VD IYH A +++P++ +KTNV+GT N+L +A V L++
Sbjct: 67 ILNATRGVDFIYHAAALKQVPSCEFHPMEAVKTNVLGTENVLEAAIANGVKRVVCLSTDK 126
Query: 232 EVY 234
VY
Sbjct: 127 AVY 129
|
The FnlA enzyme is the first step in the biosynthesis of UDP-FucNAc from UDP-GlcNAc in E. coli (along with FnlB and FnlC). The proteins identified by this model include FnlA homologs in the O-antigen clusters of O4, O25, O26, O29 (Shigella D11), O118, O145 and O172 serotype strains, all of which produce O-antigens containing FucNAc (or the further modified FucNAm). A homolog from Pseudomonas aerugiosa serotype O11, WbjB, also involved in the biosynthesis of UDP-FucNAc has been characterized and is now believed to carry out both the initial 4,6-dehydratase reaction and the subsequent epimerization of the resulting methyl group at C-5. A phylogenetic tree of related sequences shows a distinct clade of enzymes involved in the biosynthesis of UDP-QuiNAc (Qui=qinovosamine). This clade appears to be descendant from the common ancestor of the Pseudomonas and E. coli fucose-biosynthesis enzymes. It has been hypothesized that the first step in the biosynthesis of these two compounds may be the same, and thus that these enzymes all have the same function. At present, lacking sufficient confirmation of this, the current model trusted cutoff only covers the tree segment surrounding the E. coli genes. The clades containing the Pseudomonas and QuiNAc biosynthesis enzymes score above the noise cutoff. Immediately below the noise cutoff are enzymes involved in the biosynthesis of UDP-RhaNAc (Rha=rhamnose), which again may or may not produce the same product. Length = 337 |
| >gnl|CDD|187535 cd02266, SDR, Short-chain dehydrogenases/reductases (SDR) | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-05
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 34/124 (27%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
++VTGG+G +G + L RG +V+V+ R+D +VH I D
Sbjct: 1 VLVTGGSGGIGGAIARWLASRGSPKVLVVS-----RRDVVVH------NAAILDDG---- 45
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK-----RVGAKFLLTSTSE 232
+D + I+ NV+GT +L A+ + +F+L S+
Sbjct: 46 -RLIDLT------------GSRIERAIRANVVGTRRLLEAARELMKAKRLGRFILISSVA 92
Query: 233 VYGD 236
Sbjct: 93 GLFG 96
|
SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase (KR) domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type KRs have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Length = 186 |
| >gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-05
Identities = 41/140 (29%), Positives = 58/140 (41%), Gaps = 33/140 (23%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPR--FELIRH-- 171
+I++TG G +G LV L +RG EVI TGR + +P E IR
Sbjct: 1 KILITGATGMLGRALVRLLKERGYEVI-----GTGRSRASLFKLDLTDPDAVEEAIRDYK 55
Query: 172 -DVVEPI----LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFL 226
DV+ I VD+ +P + NV+ N+ AK VGA+ +
Sbjct: 56 PDVI--INCAAYTRVDKCES------------DPELAYRVNVLAPENLARAAKEVGARLI 101
Query: 227 LTSTSEVY-GDPLEHPQKET 245
ST V+ G + P KE
Sbjct: 102 HISTDYVFDGK--KGPYKEE 119
|
dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280 |
| >gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 34/140 (24%), Positives = 50/140 (35%), Gaps = 22/140 (15%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-----VE 175
V G +G +G + +L RG +V ++ +G K P E++ D V
Sbjct: 4 VLGASGPIGREVARELRRRGWDVRLVSR--SGSKLA-----WLPGVEIVAADAMDASSVI 56
Query: 176 PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
D IYH A PA + P + NV+ A+ GAK +L +YG
Sbjct: 57 AAARGADVIYHCANPAYTRWEELFP--PLMENVVAA------AEANGAKLVLPGNVYMYG 108
Query: 236 DPLEHPQKETYWGNVNPIGE 255
P E P
Sbjct: 109 PQAGSPITEDT--PFQPTTR 126
|
These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302 |
| >gnl|CDD|233557 TIGR01746, Thioester-redct, thioester reductase domain | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 35/142 (24%), Positives = 58/142 (40%), Gaps = 29/142 (20%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVI------------DNFFTGRKDNLVHHF--RNP 164
+++TG GF+G++L+++L+ R + VI + + + H
Sbjct: 2 VLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWHEDLARE 61
Query: 165 RFELIRHDVVEPIL-----------LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLN 213
R E++ D+ EP L VD I H + V++ Y + NV+GT
Sbjct: 62 RIEVVAGDLSEPRLGLSDAEWERLAENVDTIVH---NGALVNWVYPYSELRGANVLGTRE 118
Query: 214 MLGLAKRVGAK-FLLTSTSEVY 234
+L LA AK ST V
Sbjct: 119 VLRLAASGRAKPLHYVSTISVG 140
|
This model includes the terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG. The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol. (In myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase.) This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. This domain is invariably found at the C-terminus of the proteins which contain it (presumably because it results in the release of the product). The majority of hits to this model are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (pfam00550). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (GP|466833 from M. leprae, GP|435954 from Anabaena and OMNI|NTL02SC1199 from Strep. coelicolor) and one protein (OMNI|NTL01NS2636 from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain. Below the noise cutoff to this model are proteins containing more distantly related ketoreductase and dehydratase/epimerase domains. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. Length = 367 |
| >gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8 | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-04
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVI 146
+IV+TGG GF+G L +L G EV+V+
Sbjct: 1 KIVITGGTGFIGRALTRRLTAAGHEVVVL 29
|
This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296 |
| >gnl|CDD|200085 TIGR01214, rmlD, dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 19/139 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
RI++TG G +G LV +L G V+ + +L + +E +
Sbjct: 1 RILITGANGQLGRELVQQLSPEGRVVVA---------------LTRSQLDLTDPEALERL 45
Query: 178 LLEV--DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
L + D + + A + +P K N + N+ A R GA+ + ST V+
Sbjct: 46 LRAIRPDAVVNTAAYTDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVFD 105
Query: 236 DPLEHPQKETYWGNVNPIG 254
+ P +E NP+
Sbjct: 106 GEGKRPYRED--DATNPLN 122
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 287 |
| >gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7 | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVI 144
+++ VTG GF+GS +V +L+ G EV+
Sbjct: 1 MKVFVTGATGFIGSAVVRELVAAGHEVV 28
|
This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291 |
| >gnl|CDD|235962 PRK07201, PRK07201, short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 4e-04
Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 29/139 (20%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIV---IDNFFTGRKDNLVHHFRNPRFELIRHDVV 174
R VTGG GF+G LV +L+DR E V + R + L ++ R + D+
Sbjct: 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLT 61
Query: 175 EPIL----------LEVDQIYHLA------CPASPVHYKYNPVKTIKTNVMGTLNMLGLA 218
EP L ++D + HLA NV GT N++ LA
Sbjct: 62 EPGLGLSEADIAELGDIDHVVHLAAIYDLTADEE---------AQRAANVDGTRNVVELA 112
Query: 219 KRVGAK-FLLTSTSEVYGD 236
+R+ A F S+ V GD
Sbjct: 113 ERLQAATFHHVSSIAVAGD 131
|
Length = 657 |
| >gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2 | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-- 176
++VTG G+VG LV +L+ G +V + + L + R ++R D+ +P
Sbjct: 1 VLVTGATGYVGGRLVPRLLQEGHQVRAL----VRSPEKLADRPWSERVTVVRGDLEDPES 56
Query: 177 ---ILLEVDQIYHL 187
L +D Y+L
Sbjct: 57 LRAALEGIDTAYYL 70
|
This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293 |
| >gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVI 146
I++TGG GF+G L +L RG EV ++
Sbjct: 1 ILITGGTGFIGRALTQRLTKRGHEVTIL 28
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291 |
| >gnl|CDD|187547 cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 43/151 (28%), Positives = 67/151 (44%), Gaps = 35/151 (23%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVI------DNFFTGRK-------DNLVHHFR-- 162
+++TG GF+G L++KL+ ++ I + + + D L R
Sbjct: 2 SVLITGATGFLGKVLLEKLLRSCPDIGKIYLLIRGKSGQSAEERLRELLKDKLFDRGRNL 61
Query: 163 NPRFE----LIRHDVVEP-----------ILLEVDQIYHLACPASPVHYKYNPVKTIKTN 207
NP FE I D+ EP ++ EV+ I H A A+ V + + + N
Sbjct: 62 NPLFESKIVPIEGDLSEPNLGLSDEDLQTLIEEVNIIIHCA--AT-VTFDERLDEALSIN 118
Query: 208 VMGTLNMLGLAKRV--GAKFLLTSTSEVYGD 236
V+GTL +L LAKR F+ ST+ V GD
Sbjct: 119 VLGTLRLLELAKRCKKLKAFVHVSTAYVNGD 149
|
SDRs are Rossmann-fold NAD(P)H-binding proteins, many of which may function as fatty acyl CoA reductases (FAR), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. This N-terminal domain shares the catalytic triad (but not the upstream Asn) and characteristic NADP-binding motif of the extended SDR family. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 320 |
| >gnl|CDD|218026 pfam04321, RmlD_sub_bind, RmlD substrate binding domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 6e-04
Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 21/131 (16%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I+VTG G +G L L +RG EV+ R + +L + V ++
Sbjct: 1 ILVTGANGQLGRELTRLLAERGVEVVA-----LDRPE----------LDLTDPEAVAALV 45
Query: 179 LEV--DQIYHLACPA-SPVH-YKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234
E D + + A A + V + P N +G N+ GA + ST V+
Sbjct: 46 REARPDVVVNAA--AYTAVDKAESEPELAYAVNALGPGNLAEACAARGAPLIHISTDYVF 103
Query: 235 GDPLEHPQKET 245
P +E
Sbjct: 104 DGAKGGPYRED 114
|
L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesised by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Length = 284 |
| >gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIV 145
+ V G GF+G ++V++L RG +VIV
Sbjct: 2 VVTVFGATGFIGRYVVNRLAKRGSQVIV 29
|
This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273 |
| >gnl|CDD|224015 COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVI 146
I++TGG G +G L +L G +V ++
Sbjct: 1 ILITGGTGLIGRALTARLRKGGHQVTIL 28
|
Length = 297 |
| >gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1 | Back alignment and domain information |
|---|
Score = 38.4 bits (90), Expect = 0.002
Identities = 31/135 (22%), Positives = 46/135 (34%), Gaps = 42/135 (31%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL----VHHFRNPR------FE 167
+I++ GG F+G LV++L+ G +V V F GR V H R E
Sbjct: 2 KILIIGGTRFIGKALVEELLAAGHDVTV---FNRGRTKPDLPEGVEHIVGDRNDRDALEE 58
Query: 168 LIRH---DVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK 224
L+ DVV VD +P L K +
Sbjct: 59 LLGGEDFDVV------VDT-----IAYTPRQ---------------VERALDAFKGRVKQ 92
Query: 225 FLLTSTSEVYGDPLE 239
++ S++ VY P
Sbjct: 93 YIFISSASVYLKPGR 107
|
Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250 |
| >gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5 | Back alignment and domain information |
|---|
Score = 38.0 bits (89), Expect = 0.002
Identities = 28/123 (22%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF-ELIRHDVVEP 176
+++V G G VG H+V +L+DRG +V + R+P E + E
Sbjct: 1 KVLVVGATGKVGRHVVRELLDRGYQVRAL--------------VRDPSQAEKLEAAGAEV 46
Query: 177 ILLEVDQIYHLACPASPVH--------YKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLL 227
++ ++ LA + +T + G +N++ AK+ G K F+L
Sbjct: 47 VVGDLTDAESLAAALEGIDAVISAAGSGGKGGPRTEAVDYDGNINLIDAAKKAGVKRFVL 106
Query: 228 TST 230
S+
Sbjct: 107 VSS 109
|
This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203 |
| >gnl|CDD|178567 PLN02986, PLN02986, cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Score = 37.7 bits (87), Expect = 0.004
Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN---LVHHFRNPRFELIRHDVVE 175
+ VTG +G++ S +V L+ RG V T RK L R +L + D++E
Sbjct: 8 VCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLE 67
Query: 176 PILLE-----VDQIYHLACPASPVHYKYNPVKT--IKTNVMGTLNMLGLAKRVGA--KFL 226
E D ++H ASPV + +T I + GT+N+L K + + +
Sbjct: 68 ESSFEQAIEGCDAVFH---TASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVI 124
Query: 227 LTSTS 231
LTS++
Sbjct: 125 LTSST 129
|
Length = 322 |
| >gnl|CDD|187576 cd05266, SDR_a4, atypical (a) SDRs, subgroup 4 | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.004
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 10/113 (8%)
Query: 124 GAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQ 183
G G++G L +L+ +G +V T R + R + D+ +P LL
Sbjct: 5 GCGYLGQRLARQLLAQGWQVTG-----TTRSPEKLAADRPAGVTPLAADLTQPGLLADVD 59
Query: 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236
HL P Y + L+ L V + + S++ VYGD
Sbjct: 60 --HLVISLPPPAGSYRG--GYDPGLRALLDALAQLPAV-QRVIYLSSTGVYGD 107
|
Atypical SDRs in this subgroup are poorly defined, one member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is related to, but is different from, the archetypical SDRs, GXGXXG. This subgroup also lacks most of the characteristic active site residues of the SDRs; however, the upstream Ser is present at the usual place, and some potential catalytic residues are present in place of the usual YXXXK active site motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 251 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 263 | |||
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 99.95 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 99.92 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 99.89 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 99.85 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 99.85 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 99.85 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 99.84 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 99.84 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 99.84 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 99.84 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 99.84 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 99.83 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 99.83 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 99.82 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 99.82 | |
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 99.82 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 99.81 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.81 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 99.81 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 99.81 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 99.8 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 99.79 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 99.79 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.79 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.79 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 99.78 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 99.78 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 99.78 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 99.77 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.77 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 99.77 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.77 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.77 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 99.76 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 99.76 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 99.76 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.76 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 99.76 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 99.76 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 99.76 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 99.75 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 99.75 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 99.75 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.73 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 99.73 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.73 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 99.72 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.72 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 99.72 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.72 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.71 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.71 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 99.71 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.71 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.71 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 99.7 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 99.7 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.69 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.69 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.69 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.69 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.69 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.68 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.68 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.67 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.67 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.67 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.67 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.67 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.67 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.67 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.66 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.66 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.66 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.66 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.65 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.65 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.65 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.65 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.65 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.65 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.64 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.64 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.64 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.63 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.63 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.63 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.63 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.63 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.63 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.63 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.63 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.63 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.63 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.62 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.62 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.62 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.62 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.62 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.62 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.62 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.62 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.62 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.62 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.62 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.62 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.62 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.62 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.62 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.61 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.61 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.61 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.61 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.61 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.61 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.61 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.61 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.61 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.61 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.61 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.61 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.61 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.6 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.6 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.6 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.6 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.6 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.6 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.6 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.59 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.59 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.59 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.59 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.59 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.59 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.59 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.59 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.58 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.58 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.58 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.58 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.58 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.58 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.58 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.58 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.58 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.58 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 99.58 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.58 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.58 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.57 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.57 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.57 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.57 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.57 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 99.57 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.57 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.57 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.57 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.56 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.56 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.56 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.56 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.56 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.56 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.56 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.56 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.55 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.55 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.55 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.55 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.55 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.55 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.55 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.54 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.54 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.54 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.54 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.54 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.54 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.53 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.53 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.53 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.53 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.52 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.52 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.52 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.52 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.52 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.52 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.52 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.52 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.51 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.51 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.5 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.5 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.49 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.49 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.49 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.49 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.49 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.48 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.48 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.48 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.47 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.47 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.47 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 99.47 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.47 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.47 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.46 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.46 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.46 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.45 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.45 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.44 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.43 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.43 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.42 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.39 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 99.37 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.37 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.35 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.34 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.31 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.3 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.28 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.27 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.25 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.23 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.22 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.2 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.16 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.11 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.11 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 99.02 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 98.94 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 98.91 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.8 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 98.77 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 98.77 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 98.77 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 98.75 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.68 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 98.66 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 98.57 | |
| PLN00106 | 323 | malate dehydrogenase | 98.56 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 98.56 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.52 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 98.5 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.4 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.36 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.28 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 98.27 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.26 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 98.21 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.15 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.14 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.1 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 98.1 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.07 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.03 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 98.02 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 97.99 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.95 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.9 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.87 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.87 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 97.86 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 97.79 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.79 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.76 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.74 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.72 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 97.71 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.69 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.64 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 97.6 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.59 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.55 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.52 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 97.5 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.5 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.48 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.48 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.44 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.44 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.44 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.44 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 97.43 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 97.43 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 97.4 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 97.39 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.38 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.37 | |
| PLN02602 | 350 | lactate dehydrogenase | 97.36 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 97.36 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 97.35 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.32 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.32 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.26 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 97.25 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 97.24 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 97.2 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 97.19 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 97.19 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 97.19 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.18 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 97.17 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 97.17 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.16 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 97.14 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.14 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 97.13 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 97.09 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.06 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 97.05 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.03 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.03 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.02 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 97.01 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 96.96 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.96 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.95 | |
| PRK08223 | 287 | hypothetical protein; Validated | 96.95 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.95 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 96.92 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.92 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 96.92 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.9 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 96.9 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.9 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.85 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.83 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 96.83 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.83 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 96.83 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.82 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 96.79 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 96.77 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 96.76 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.72 | |
| PRK07411 | 390 | hypothetical protein; Validated | 96.68 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 96.67 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.66 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.66 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.64 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.64 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 96.6 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.6 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.57 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.55 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.55 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 96.53 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.53 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 96.49 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 96.47 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.43 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.41 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 96.37 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 96.37 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 96.37 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.34 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 96.32 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.3 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.26 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 96.16 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.15 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 96.14 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 96.13 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.11 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 96.11 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.04 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.02 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.02 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 96.0 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 95.99 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.95 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 95.92 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 95.91 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 95.91 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 95.9 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 95.88 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 95.87 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.84 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 95.83 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.83 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.82 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 95.82 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.81 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.8 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 95.77 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 95.76 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 95.75 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 95.75 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.74 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.74 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.73 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 95.68 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.67 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 95.67 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 95.65 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 95.64 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 95.54 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 95.52 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 95.51 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 95.51 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 95.5 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 95.48 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.46 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 95.46 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.44 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 95.43 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.42 | |
| PLN02494 | 477 | adenosylhomocysteinase | 95.4 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 95.35 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.3 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 95.28 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 95.28 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 95.27 | |
| cd05276 | 323 | p53_inducible_oxidoreductase PIG3 p53-inducible qu | 95.27 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.23 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 95.22 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 95.18 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.18 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.17 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 95.17 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 95.14 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 95.14 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 95.13 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 95.12 | |
| cd08253 | 325 | zeta_crystallin Zeta-crystallin with NADP-dependen | 95.06 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 95.03 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.0 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 94.98 | |
| COG2130 | 340 | Putative NADP-dependent oxidoreductases [General f | 94.98 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.98 | |
| PRK05447 | 385 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase; P | 94.98 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 94.94 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 94.93 | |
| PLN02928 | 347 | oxidoreductase family protein | 94.91 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 94.88 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 94.88 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.87 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 94.86 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 94.85 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.84 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 94.83 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 94.82 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.8 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.8 |
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-48 Score=360.84 Aligned_cols=262 Identities=79% Similarity=1.199 Sum_probs=208.9
Q ss_pred cccccCcccccccccccCCCCCCCCCCCCCCCCCCchhhhHHHhhhHHHHHHHHHHHHHHHHhhcCCcCCCCCCCCCCCc
Q 024766 2 KLHKQSSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFILQPILSRLGPPQELHPF 81 (263)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~p~~s~~~~~~~~~~~ 81 (263)
||||||..+||+++..+...++.|+|||.++++|+||+++|+|+|||++|+|+||+|+++||+++|+++++++..+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T PLN02166 3 QLHKQMSVNHRRDEEIPTSQSSPYSPKTLKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFILQPSLSRLGPAESTSLI 82 (436)
T ss_pred chhhcCCccccCCCCCCccccCCCCCCCCCCCccccchHHHHHHhhhHHHHHHHHHHHHHHHhhCCccccCCcccccccc
Confidence 89999999999996656545899999977667999999999999999999999999999999999998877664322221
Q ss_pred cc---hhhhhhccccccccccccCcccCCCCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhh
Q 024766 82 HA---LTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV 158 (263)
Q Consensus 82 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~ 158 (263)
.. ......................++.|.+...+.++|+||||+||||++|+++|+++|++|++++|......+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~ 162 (436)
T PLN02166 83 TRSVSIAVTDSPPSSSTFNSSGGGGRTGRVPVGIGRKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLV 162 (436)
T ss_pred ccccccccccCccchhhccccccccccCCCCcccccCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhh
Confidence 11 000000011111111111244678899999999999999999999999999999999999999986544333333
Q ss_pred hhcCCCceEEEEccccccccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCC
Q 024766 159 HHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238 (263)
Q Consensus 159 ~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~ 238 (263)
......+++++..|+.++.+.++|+|||+|+...+.....++...+++|+.|+.+++++|++.++++|++||.+|||++.
T Consensus 163 ~~~~~~~~~~~~~Di~~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~~~ 242 (436)
T PLN02166 163 HLFGNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGDPL 242 (436)
T ss_pred hhccCCceEEEECccccccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCCCC
Confidence 33344578899999999888899999999987655555567889999999999999999999888999999999999887
Q ss_pred CCCcCCCCCCCCCCCCcCccccccC
Q 024766 239 EHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 239 ~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
+.+.+|++|...+|..+.+.|+.+|
T Consensus 243 ~~p~~E~~~~~~~p~~p~s~Yg~SK 267 (436)
T PLN02166 243 EHPQKETYWGNVNPIGERSCYDEGK 267 (436)
T ss_pred CCCCCccccccCCCCCCCCchHHHH
Confidence 7789999877778888899999887
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-46 Score=348.58 Aligned_cols=257 Identities=60% Similarity=0.975 Sum_probs=201.5
Q ss_pred cCcccccccccccCCCCCCCCCCCCCCCCCCchhhhHHHhhhHHHHHHHHHHHHHHHHhhcCCcCCCCCC-CCCCCccch
Q 024766 6 QSSMTQRRDEETLSGQNSPYLSKTPKHPRSLPRSINYLFKEQRLLFILVGILIGSTFFILQPILSRLGPP-QELHPFHAL 84 (263)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~p~~s~~~~~-~~~~~~~~~ 84 (263)
+|||+||+++..+. .++.|+|||+|||+|+||+++|+|+|||++|+|+||+|+++||+++|+++++++. .+.......
T Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (442)
T PLN02206 2 ASELINRRHEETQP-TADAYYPKPIKPWFVVTRPIRYMLREQRLVFVLVGIAIATLVFTIFPSSSQPSPYSVDPLSGYGI 80 (442)
T ss_pred CccccccCCCCCCC-CCCCCCCCCCCCcccCccHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcCCCCcccccccccccc
Confidence 69999999954343 4899999999999999999999999999999999999999999999887655441 111111100
Q ss_pred hhhhhc-ccccccc------ccccCcccCCCCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhh
Q 024766 85 TANQQR-QSFQFHR------TSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL 157 (263)
Q Consensus 85 ~~~~~~-~~~~~~~------~~~~~~~~~~~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~ 157 (263)
...... .+.+... ...+....++.|.+...++|+|+||||+||||++|+++|+++|++|++++|......+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~ 160 (442)
T PLN02206 81 RPDESYVPAIQAQRKPSLEYLNRIGNSGGKIPLGLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENV 160 (442)
T ss_pred cccccccccccceecccccccccccccCCcCccccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhh
Confidence 000000 0000000 011123357788888889999999999999999999999999999999987654444443
Q ss_pred hhhcCCCceEEEEccccccccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCC
Q 024766 158 VHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237 (263)
Q Consensus 158 ~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~ 237 (263)
...+...+++++.+|+.++.+.++|+|||+|+...+.....++.+.+++|+.|+.+++++|++.++++|++||..+||..
T Consensus 161 ~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~VYg~~ 240 (442)
T PLN02206 161 MHHFSNPNFELIRHDVVEPILLEVDQIYHLACPASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDP 240 (442)
T ss_pred hhhccCCceEEEECCccChhhcCCCEEEEeeeecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChHHhCCC
Confidence 33344567899999999998889999999998766555556788999999999999999999988899999999999988
Q ss_pred CCCCcCCCCCCCCCCCCcCccccccC
Q 024766 238 LEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 238 ~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
...+.+|++|...+|..+.+.|+.+|
T Consensus 241 ~~~p~~E~~~~~~~P~~~~s~Y~~SK 266 (442)
T PLN02206 241 LQHPQVETYWGNVNPIGVRSCYDEGK 266 (442)
T ss_pred CCCCCCccccccCCCCCccchHHHHH
Confidence 77789999887778888889999887
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-28 Score=207.93 Aligned_cols=150 Identities=75% Similarity=1.193 Sum_probs=144.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASP 193 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~ 193 (263)
..+++|+||||+||||++|+++|..+|++|+++|.-.++..+++........++++..|+..+.+.++|.|||.|++.++
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~~pl~~evD~IyhLAapasp 104 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIGHPNFELIRHDVVEPLLKEVDQIYHLAAPASP 104 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhccCcceeEEEeechhHHHHHhhhhhhhccCCCC
Confidence 35589999999999999999999999999999999999999988888889999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.++..++.+++.+|+.|+.+++.+|++.++||++.||+.|||++..+|+.|++|++++|+.+++||...|
T Consensus 105 ~~y~~npvktIktN~igtln~lglakrv~aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cydegK 174 (350)
T KOG1429|consen 105 PHYKYNPVKTIKTNVIGTLNMLGLAKRVGARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGK 174 (350)
T ss_pred cccccCccceeeecchhhHHHHHHHHHhCceEEEeecccccCCcccCCCccccccccCcCCchhhhhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998765
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-24 Score=190.51 Aligned_cols=138 Identities=36% Similarity=0.636 Sum_probs=124.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc-------CCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL-------LEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~-------~~iD~Vi~~Ag 189 (263)
++||||||+|+||++++.+|++.|++|+++|+......+.+... .+.++.+|+.|..+ .++|.|||+||
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~----~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa 76 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKL----QFKFYEGDLLDRALLTAVFEENKIDAVVHFAA 76 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhc----cCceEEeccccHHHHHHHHHhcCCCEEEECcc
Confidence 47999999999999999999999999999999877766655433 27899999998733 36999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
......+.++|.+.++.|+.||.+|+++|++.++ +|||-||++|||.+...|+.|+ .|+.|.+.||.||
T Consensus 77 ~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~-----~~~~p~NPYG~sK 146 (329)
T COG1087 77 SISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISET-----SPLAPINPYGRSK 146 (329)
T ss_pred ccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCC-----CCCCCCCcchhHH
Confidence 9888888899999999999999999999999998 9999999999999999999999 5888999999997
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=183.80 Aligned_cols=148 Identities=30% Similarity=0.360 Sum_probs=116.5
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc------CCCceEEEEcccccc-----ccC
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF------RNPRFELIRHDVVEP-----ILL 179 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~------~~~~v~~~~~Dv~~~-----~~~ 179 (263)
+..+++|+|+||||+||||++|+++|+++|++|++++|............. ...++.++.+|+.|. .+.
T Consensus 10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~ 89 (348)
T PRK15181 10 KLVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACK 89 (348)
T ss_pred cccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhh
Confidence 345678999999999999999999999999999999986543322221111 123578899999875 256
Q ss_pred CCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCcc
Q 024766 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLA 258 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~ 258 (263)
++|+|||+|+.........++...+++|+.|+.+++++|++.++ +||++||.++||...+.+..|+. +..|.+.
T Consensus 90 ~~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~-----~~~p~~~ 164 (348)
T PRK15181 90 NVDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEER-----IGRPLSP 164 (348)
T ss_pred CCCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCCC-----CCCCCCh
Confidence 79999999987655445567788899999999999999999987 99999999999976566666763 4556678
Q ss_pred ccccC
Q 024766 259 ATAVV 263 (263)
Q Consensus 259 Y~~sK 263 (263)
|+.||
T Consensus 165 Y~~sK 169 (348)
T PRK15181 165 YAVTK 169 (348)
T ss_pred hhHHH
Confidence 99887
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.9e-21 Score=166.87 Aligned_cols=142 Identities=31% Similarity=0.487 Sum_probs=121.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCC-ccchhhhhhhcCCCceEEEEcccccccc-----C--CCcEEEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFF-TGRKDNLVHHFRNPRFELIRHDVVEPIL-----L--EVDQIYH 186 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~-~~~~~~~~~~~~~~~v~~~~~Dv~~~~~-----~--~iD~Vi~ 186 (263)
|++|||||+||||+..++.++++.. +|++++... .+..+.+....+.+++.++.+|+.|... . ++|+|+|
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 5799999999999999999999865 578887652 3355666667678899999999998733 2 5999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcCcceecCCCC--CCcCCCCCCCCCCCCcCcccccc
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLE--HPQKETYWGNVNPIGELLAATAV 262 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS~~vyg~~~~--~~~~E~~~~~~~p~~~~~~Y~~s 262 (263)
.|+-.+..++-..|...+++|+.||.+|++++++... ||++|||..|||.-.. ..++|+ +|+.|.+.|.+|
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~-----tp~~PsSPYSAS 155 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTET-----TPYNPSSPYSAS 155 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccC-----CCCCCCCCcchh
Confidence 9998887778888999999999999999999999874 9999999999997433 368888 699999999999
Q ss_pred C
Q 024766 263 V 263 (263)
Q Consensus 263 K 263 (263)
|
T Consensus 156 K 156 (340)
T COG1088 156 K 156 (340)
T ss_pred h
Confidence 8
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-21 Score=173.80 Aligned_cols=142 Identities=28% Similarity=0.337 Sum_probs=110.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc-hhhhhhhc------CCCceEEEEccccccc-----cC--CCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHHF------RNPRFELIRHDVVEPI-----LL--EVD 182 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~-~~~~~~~~------~~~~v~~~~~Dv~~~~-----~~--~iD 182 (263)
|+|+||||+||||++|+++|+++|++|++++|+.+.. .+...... ....+.++.+|++|.. +. ++|
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d 80 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT 80 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence 5899999999999999999999999999999875421 11111111 1245889999998862 22 479
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC----eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCcc
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA----KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLA 258 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~----~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~ 258 (263)
+|||+|+.........++...+++|+.|+.+++++|++.+. ++|++||.++||.....+.+|+ .|..|.+.
T Consensus 81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~ 155 (343)
T TIGR01472 81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNET-----TPFYPRSP 155 (343)
T ss_pred EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCC-----CCCCCCCh
Confidence 99999987554334445678889999999999999988762 7999999999997666677887 46778889
Q ss_pred ccccC
Q 024766 259 ATAVV 263 (263)
Q Consensus 259 Y~~sK 263 (263)
|++||
T Consensus 156 Y~~sK 160 (343)
T TIGR01472 156 YAAAK 160 (343)
T ss_pred hHHHH
Confidence 99987
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-21 Score=170.21 Aligned_cols=125 Identities=23% Similarity=0.203 Sum_probs=104.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccC--CCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~--~iD~Vi~~Ag 189 (263)
|+||||||+||||++++++|+++| +|++++|... .+.+|++|. .+. ++|+|||+|+
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~----------------~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa 63 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST----------------DYCGDFSNPEGVAETVRKIRPDVIVNAAA 63 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc----------------cccCCCCCHHHHHHHHHhcCCCEEEECCc
Confidence 479999999999999999999999 7988887421 234577665 223 5899999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.......+.+++..+.+|+.|+.+++++|++.++++|++||..|||.....|++|+ +|..|.+.||.||
T Consensus 64 ~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~~~~~~p~~E~-----~~~~P~~~Yg~sK 132 (299)
T PRK09987 64 HTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVHYSTDYVFPGTGDIPWQET-----DATAPLNVYGETK 132 (299)
T ss_pred cCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEccceEECCCCCCCcCCC-----CCCCCCCHHHHHH
Confidence 87655566678888999999999999999999889999999999998777789998 4667788899887
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=170.46 Aligned_cols=145 Identities=21% Similarity=0.285 Sum_probs=112.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhh-hhhhcC-CCceEEEEcccccc-----ccCCCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN-LVHHFR-NPRFELIRHDVVEP-----ILLEVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~-~~~~~~-~~~v~~~~~Dv~~~-----~~~~iD~Vi~ 186 (263)
+++|+|+||||+||||++++++|+++|++|++++|+.+..... ...... ..+++++.+|+.+. .+.++|+|||
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 87 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH 87 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence 4678999999999999999999999999999999875432211 111111 23578889999875 3457999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCc-ceecCCCC---CCcCCCCCCCCC-CCCcCcccc
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTS-EVYGDPLE---HPQKETYWGNVN-PIGELLAAT 260 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~-~vyg~~~~---~~~~E~~~~~~~-p~~~~~~Y~ 260 (263)
+|+.. ..++...+++|+.|+.+++++|++.+. +||++||. ++||.+.. .+++|++|.+.+ +..+.+.|+
T Consensus 88 ~A~~~-----~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~ 162 (342)
T PLN02214 88 TASPV-----TDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYC 162 (342)
T ss_pred ecCCC-----CCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHHH
Confidence 99753 246788899999999999999999886 89999996 68985432 357898775433 556778899
Q ss_pred ccC
Q 024766 261 AVV 263 (263)
Q Consensus 261 ~sK 263 (263)
.||
T Consensus 163 ~sK 165 (342)
T PLN02214 163 YGK 165 (342)
T ss_pred HHH
Confidence 987
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.8e-21 Score=166.98 Aligned_cols=143 Identities=27% Similarity=0.416 Sum_probs=124.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc----CCCceEEEEcccccccc-------CCCcEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF----RNPRFELIRHDVVEPIL-------LEVDQI 184 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~Dv~~~~~-------~~iD~V 184 (263)
+++||||||+||||++++-+|+++|+.|+++|+......+.+.... ....+.+..+|+.|... .++|.|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V 81 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV 81 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence 5799999999999999999999999999999988776655543332 24789999999999733 359999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCC-cCcccccc
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIG-ELLAATAV 262 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~-~~~~Y~~s 262 (263)
+|.|+........+++......|+.|+.++++.+++++. .+|+.||++|||.+..-|++|.. |.. |.+.||.+
T Consensus 82 ~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~~-----~t~~p~~pyg~t 156 (343)
T KOG1371|consen 82 MHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEED-----PTDQPTNPYGKT 156 (343)
T ss_pred EeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCcC-----CCCCCCCcchhh
Confidence 999998887777888899999999999999999999997 89999999999999999999994 555 88888887
Q ss_pred C
Q 024766 263 V 263 (263)
Q Consensus 263 K 263 (263)
|
T Consensus 157 K 157 (343)
T KOG1371|consen 157 K 157 (343)
T ss_pred h
Confidence 6
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-20 Score=172.29 Aligned_cols=133 Identities=25% Similarity=0.407 Sum_probs=101.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccchhhhhhh--cCCCceEEEEcccccc-----ccCCCcEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP-----ILLEVDQI 184 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~Dv~~~-----~~~~iD~V 184 (263)
..+.|+|+||||+||||++|+++|+++ |++|++++|+........... ....+++++.+|+.|. .+.++|+|
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V 90 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT 90 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence 456679999999999999999999998 589999988644322111110 0124688999999875 34579999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCC
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKET 245 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~ 245 (263)
||+|+...+..+..++.+.+..|+.|+.+++++|++.+.+||++||.++||...+.+..|+
T Consensus 91 iHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~~r~v~~SS~~vYg~~~~~~~~e~ 151 (386)
T PLN02427 91 INLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENNKRLIHFSTCEVYGKTIGSFLPKD 151 (386)
T ss_pred EEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeeeeeCCCcCCCCCcc
Confidence 9999876554444566777889999999999999888789999999999997544444444
|
|
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-20 Score=170.14 Aligned_cols=145 Identities=26% Similarity=0.311 Sum_probs=112.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch-hhhhhhc-----CCCceEEEEccccccc-----cC--
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHF-----RNPRFELIRHDVVEPI-----LL-- 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~-~~~~~~~-----~~~~v~~~~~Dv~~~~-----~~-- 179 (263)
+.++|+|+||||+||||++++++|+++|++|++++|...... +.+.... ....+.++.+|++|.. +.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 82 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDI 82 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHc
Confidence 346789999999999999999999999999999988654211 1111111 1245888999998762 22
Q ss_pred CCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC------eEEEEcCcceecCCCCCCcCCCCCCCCCCC
Q 024766 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA------KFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~------~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~ 253 (263)
++|+||||||.........++...+++|+.|+.++++++++.+. +||++||.++||.... +++|+ .|.
T Consensus 83 ~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~-~~~E~-----~~~ 156 (340)
T PLN02653 83 KPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPP-PQSET-----TPF 156 (340)
T ss_pred CCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCC-CCCCC-----CCC
Confidence 47999999987554444456788889999999999999988763 7999999999997654 77887 477
Q ss_pred CcCccccccC
Q 024766 254 GELLAATAVV 263 (263)
Q Consensus 254 ~~~~~Y~~sK 263 (263)
.+.+.|+.||
T Consensus 157 ~p~~~Y~~sK 166 (340)
T PLN02653 157 HPRSPYAVAK 166 (340)
T ss_pred CCCChhHHHH
Confidence 7888999987
|
|
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-20 Score=168.09 Aligned_cols=145 Identities=23% Similarity=0.287 Sum_probs=111.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----cC--CCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----LL--EVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~~--~iD~Vi~ 186 (263)
.++|+|+||||+||||++++++|+++|++|++++|+...............++..+.+|+++.. +. ++|+|||
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih 81 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH 81 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence 4678999999999999999999999999999999876543322111111235778899998763 22 4799999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEcCcceecCCC-CCCcCCCCCCCCCCCCcCccccccC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPL-EHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-~iV~vSS~~vyg~~~-~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
+||.........++...+++|+.|+.++++++++.+ . +||++||.++||... ..++.|+ .|..+.+.|+.||
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~-----~~~~p~~~Y~~sK 156 (349)
T TIGR02622 82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRET-----DPLGGHDPYSSSK 156 (349)
T ss_pred CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccC-----CCCCCCCcchhHH
Confidence 998654434455788899999999999999998876 4 899999999998643 2356676 4666788899887
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-20 Score=168.66 Aligned_cols=144 Identities=22% Similarity=0.331 Sum_probs=111.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccchhhhhhhcCCCceEEEEcccc-cc-----ccCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV-EP-----ILLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~-~~-----~~~~iD~Vi~~A 188 (263)
+|+|+||||+||||++|+++|+++ |++|++++|+... .........++++.+|+. +. .+.++|+|||+|
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~----~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~a 76 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDR----LGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLV 76 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHH----HHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECc
Confidence 468999999999999999999986 6999999875322 122223346889999997 42 345799999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCC-CCCC-CcCccccccC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGN-VNPI-GELLAATAVV 263 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~-~~p~-~~~~~Y~~sK 263 (263)
+...+.....++...+++|+.|+.+++++|++.+.++|++||.++||...+.+.+|++.+. ..|. .+.+.|+.||
T Consensus 77 a~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK 153 (347)
T PRK11908 77 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSK 153 (347)
T ss_pred ccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecceeeccCCCcCcCccccccccCcCCCccchHHHHH
Confidence 8766555566788899999999999999999888899999999999976556677765321 1222 4566899887
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.2e-20 Score=180.40 Aligned_cols=148 Identities=24% Similarity=0.408 Sum_probs=117.2
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccCCCcEE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQI 184 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~~iD~V 184 (263)
...++|+|+||||+||||++|+++|+++ |++|++++|....... .....+++++.+|++|. .+.++|+|
T Consensus 311 ~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~V 386 (660)
T PRK08125 311 SAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISR----FLGHPRFHFVEGDISIHSEWIEYHIKKCDVV 386 (660)
T ss_pred hhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhh----hcCCCceEEEeccccCcHHHHHHHhcCCCEE
Confidence 3457889999999999999999999986 7999999986543211 12234688899999863 24579999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCC-CCCCC-CcCcccccc
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWG-NVNPI-GELLAATAV 262 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~-~~~p~-~~~~~Y~~s 262 (263)
||+||...+.....++...+++|+.|+.+++++|++.+.+||++||.++||...+.+++|+++. +..|. .+.+.|+.|
T Consensus 387 iHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~s 466 (660)
T PRK08125 387 LPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYSVS 466 (660)
T ss_pred EECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchHHH
Confidence 9999976655556678889999999999999999998889999999999997666678888643 12343 356789998
Q ss_pred C
Q 024766 263 V 263 (263)
Q Consensus 263 K 263 (263)
|
T Consensus 467 K 467 (660)
T PRK08125 467 K 467 (660)
T ss_pred H
Confidence 7
|
|
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.5e-20 Score=163.08 Aligned_cols=138 Identities=34% Similarity=0.465 Sum_probs=103.6
Q ss_pred EEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCCCC
Q 024766 120 VVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPAS 192 (263)
Q Consensus 120 lVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~~~ 192 (263)
|||||+||||++|+++|+++| ++|.++++........ ........+++.+|++|+ .+.++|+|||+|++..
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~--~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~ 78 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLK--DLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVP 78 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccch--hhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccc
Confidence 699999999999999999999 6899988765543211 111222334899999886 5678999999997654
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecC-CCCCCc---CCCCCCCCCCCCcCccccccC
Q 024766 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGD-PLEHPQ---KETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~-~~~~~~---~E~~~~~~~p~~~~~~Y~~sK 263 (263)
... ....+..+++|+.||.|++++|++.++ ++||+||.+++++ ..+.++ +|+.+ .|......|+.||
T Consensus 79 ~~~-~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~---~~~~~~~~Y~~SK 150 (280)
T PF01073_consen 79 PWG-DYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTP---YPSSPLDPYAESK 150 (280)
T ss_pred ccC-cccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCc---ccccccCchHHHH
Confidence 322 456788999999999999999999997 9999999999885 222333 44432 2344677898887
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=165.55 Aligned_cols=145 Identities=27% Similarity=0.404 Sum_probs=113.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchh---hhhhhc--CCCceEEEEccccccc-----c--CCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD---NLVHHF--RNPRFELIRHDVVEPI-----L--LEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~---~~~~~~--~~~~v~~~~~Dv~~~~-----~--~~i 181 (263)
+++|+|+||||+||||++|+++|+++|++|++++|....... ...... ...++.++.+|+.++. + .++
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~ 82 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF 82 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence 567899999999999999999999999999999875432211 111111 1245788999998762 2 268
Q ss_pred cEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCcccc
Q 024766 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAAT 260 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~ 260 (263)
|+|||+|+.........++...+++|+.++.++++++++.+. +||++||.++||...+.+++|+ .|..+.+.|+
T Consensus 83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~-----~~~~~~~~Y~ 157 (352)
T PLN02240 83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEE-----FPLSATNPYG 157 (352)
T ss_pred CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCC-----CCCCCCCHHH
Confidence 999999986543334457888999999999999999998875 8999999999997777788888 4667778899
Q ss_pred ccC
Q 024766 261 AVV 263 (263)
Q Consensus 261 ~sK 263 (263)
.||
T Consensus 158 ~sK 160 (352)
T PLN02240 158 RTK 160 (352)
T ss_pred HHH
Confidence 886
|
|
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-19 Score=168.92 Aligned_cols=152 Identities=24% Similarity=0.271 Sum_probs=108.1
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch----------------hhhhh--hcCCCceEEEEcc
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK----------------DNLVH--HFRNPRFELIRHD 172 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~----------------~~~~~--~~~~~~v~~~~~D 172 (263)
...+++|+|+||||+||||++|+++|+++|++|+++++...... +.+.. .....+++++.+|
T Consensus 42 ~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~D 121 (442)
T PLN02572 42 SSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGD 121 (442)
T ss_pred CccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECC
Confidence 34578899999999999999999999999999999875422110 00100 0112368899999
Q ss_pred ccccc-----cC--CCcEEEEccCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcCcceecCCCCC
Q 024766 173 VVEPI-----LL--EVDQIYHLACPASPVHYKYN---PVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEH 240 (263)
Q Consensus 173 v~~~~-----~~--~iD~Vi~~Ag~~~~~~~~~~---~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS~~vyg~~~~~ 240 (263)
+.|.. +. ++|+|||+|+.........+ ++..+++|+.|+.+++++|++.++ +||++||.++||... .
T Consensus 122 l~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~-~ 200 (442)
T PLN02572 122 ICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPN-I 200 (442)
T ss_pred CCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCC-C
Confidence 98863 22 58999999976433222222 356679999999999999998874 799999999999643 2
Q ss_pred CcCCCCCC---------CCCCCCcCccccccC
Q 024766 241 PQKETYWG---------NVNPIGELLAATAVV 263 (263)
Q Consensus 241 ~~~E~~~~---------~~~p~~~~~~Y~~sK 263 (263)
+..|.... ...|..|.+.||.||
T Consensus 201 ~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK 232 (442)
T PLN02572 201 DIEEGYITITHNGRTDTLPYPKQASSFYHLSK 232 (442)
T ss_pred CCcccccccccccccccccCCCCCCCcchhHH
Confidence 34443210 113667788999987
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-19 Score=163.26 Aligned_cols=149 Identities=21% Similarity=0.199 Sum_probs=106.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag 189 (263)
.+++|+||||+||||++++++|+++|++|++++|+...............++.++.+|+.+. .+.++|+|||+|+
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~ 88 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVAA 88 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECCc
Confidence 45699999999999999999999999999999886543322222221235688899999875 3457999999998
Q ss_pred CCCCCC--CCCCHHH-----HHHHHHHHHHHHHHHHHHcC-C-eEEEEcCcceecCCC-----CCCcCCCCCCCCC----
Q 024766 190 PASPVH--YKYNPVK-----TIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPL-----EHPQKETYWGNVN---- 251 (263)
Q Consensus 190 ~~~~~~--~~~~~~~-----~~~~Nv~gt~~ll~~a~~~~-~-~iV~vSS~~vyg~~~-----~~~~~E~~~~~~~---- 251 (263)
...... ...++.. .+++|+.|+.+++++|++.+ . +||++||.++||... ..+++|+.+.+.+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~~~~ 168 (353)
T PLN02896 89 SMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHVWN 168 (353)
T ss_pred cccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHHhhc
Confidence 754322 2223433 45666799999999998775 4 999999999998532 1356776433221
Q ss_pred CCCcCccccccC
Q 024766 252 PIGELLAATAVV 263 (263)
Q Consensus 252 p~~~~~~Y~~sK 263 (263)
+..+.+.||.||
T Consensus 169 ~~~~~~~Y~~sK 180 (353)
T PLN02896 169 TKASGWVYVLSK 180 (353)
T ss_pred cCCCCccHHHHH
Confidence 233556899987
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-19 Score=170.16 Aligned_cols=137 Identities=30% Similarity=0.390 Sum_probs=114.9
Q ss_pred ccccccCcccCCCCcccc-------CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhh---hhhhcCCC
Q 024766 96 HRTSSFGAKTGRVPVGIG-------RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN---LVHHFRNP 164 (263)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~-------~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~---~~~~~~~~ 164 (263)
.+..++.+..+|.|+..+ +.||+|+||||+|.||+++++++++.+. +++++++++.+.... +.+.+...
T Consensus 223 lreI~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~ 302 (588)
T COG1086 223 LREIEIEDLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPEL 302 (588)
T ss_pred cccCCHHHHhCCCCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCc
Confidence 455666788888877554 6999999999999999999999999988 777888876654332 23333457
Q ss_pred ceEEEEccccccc-----cCC--CcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcc
Q 024766 165 RFELIRHDVVEPI-----LLE--VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSE 232 (263)
Q Consensus 165 ~v~~~~~Dv~~~~-----~~~--iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~ 232 (263)
++..+.+|+.|.. +.+ +|+|||.|+..+.+..+.+|.+.+.+|+.||.|++++|.+.++ ++|++||..
T Consensus 303 ~~~~~igdVrD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDK 378 (588)
T COG1086 303 KLRFYIGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDK 378 (588)
T ss_pred ceEEEecccccHHHHHHHHhcCCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCc
Confidence 8999999999873 344 9999999999998889999999999999999999999999998 999999974
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-19 Score=159.91 Aligned_cols=148 Identities=22% Similarity=0.287 Sum_probs=108.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc----CCCceEEEEccccccc-----cCCCcEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF----RNPRFELIRHDVVEPI-----LLEVDQIY 185 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~Dv~~~~-----~~~iD~Vi 185 (263)
.+|+++||||+||||++++++|+++|++|+++.|+....... .... ...++.++.+|+++.. +.++|+||
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKT-DHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhH-HHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 367999999999999999999999999999888875543221 1111 1246888999998763 45799999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcCcceecCCC-----CCCcCCCCCCCCC-CCCcCc
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSEVYGDPL-----EHPQKETYWGNVN-PIGELL 257 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~-~iV~vSS~~vyg~~~-----~~~~~E~~~~~~~-p~~~~~ 257 (263)
||||........+++.+.+++|+.|+.++++++.+. +. +||++||.++|+.+. ..+++|+++..+. +..+.+
T Consensus 83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~ 162 (325)
T PLN02989 83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQ 162 (325)
T ss_pred EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhccccc
Confidence 999864332223456788999999999999999875 34 899999988775432 3467888643221 122346
Q ss_pred cccccC
Q 024766 258 AATAVV 263 (263)
Q Consensus 258 ~Y~~sK 263 (263)
.|+.||
T Consensus 163 ~Y~~sK 168 (325)
T PLN02989 163 WYVLSK 168 (325)
T ss_pred chHHHH
Confidence 799887
|
|
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-19 Score=160.32 Aligned_cols=148 Identities=20% Similarity=0.277 Sum_probs=107.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhh--hhhhcCCCceEEEEccccccc-----cCCCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN--LVHHFRNPRFELIRHDVVEPI-----LLEVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~--~~~~~~~~~v~~~~~Dv~~~~-----~~~iD~Vi~ 186 (263)
.++++|+||||+||||++|+++|+++|++|+++.|+....... ........++.++.+|++|+. +.++|+|||
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 86 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVFH 86 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEEE
Confidence 4578999999999999999999999999999888865432211 111111235888999998763 457999999
Q ss_pred ccCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcCcceecCC----CCCCcCCCCCCCC----CCCCc
Q 024766 187 LACPASPVHYKYNP-VKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSEVYGDP----LEHPQKETYWGNV----NPIGE 255 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~-~~~~~~Nv~gt~~ll~~a~~~-~~-~iV~vSS~~vyg~~----~~~~~~E~~~~~~----~p~~~ 255 (263)
+|+... ....++ ...+++|+.|+.++++++.+. +. +||++||.++||.. .+.+.+|..|... .+..+
T Consensus 87 ~A~~~~--~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p 164 (338)
T PLN00198 87 VATPVN--FASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPP 164 (338)
T ss_pred eCCCCc--cCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCc
Confidence 998532 112333 356799999999999999876 34 99999999999853 2346677754321 23456
Q ss_pred CccccccC
Q 024766 256 LLAATAVV 263 (263)
Q Consensus 256 ~~~Y~~sK 263 (263)
.+.|+.||
T Consensus 165 ~~~Y~~sK 172 (338)
T PLN00198 165 TWGYPASK 172 (338)
T ss_pred cchhHHHH
Confidence 77899887
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.8e-19 Score=158.31 Aligned_cols=142 Identities=24% Similarity=0.467 Sum_probs=109.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhh--hcCCCceEEEEccccccc-----cC--CCcEEEEc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH--HFRNPRFELIRHDVVEPI-----LL--EVDQIYHL 187 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~--~~~~~~v~~~~~Dv~~~~-----~~--~iD~Vi~~ 187 (263)
|+|+||||+||||++++++|+++|++|++++|........... .....++.++.+|+.|.. +. ++|+|||+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~ 80 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF 80 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence 4799999999999999999999999999987653332221111 112345677889998763 22 58999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCC-CcCccccccC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPI-GELLAATAVV 263 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~-~~~~~Y~~sK 263 (263)
|+..........+.+.+++|+.++.++++++++.+. +||++||.++||.....+++|++ |. .+.+.|+.+|
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~-----~~~~p~~~Y~~sK 153 (338)
T PRK10675 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESF-----PTGTPQSPYGKSK 153 (338)
T ss_pred CccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCcccccc-----CCCCCCChhHHHH
Confidence 986543333445678899999999999999999886 89999999999977677888884 43 4677898876
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.7e-19 Score=159.93 Aligned_cols=143 Identities=30% Similarity=0.432 Sum_probs=104.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEE-EecCCccc-hhhhhhhcCCCceEEEEccccccc-----cC--CCcEEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIV-IDNFFTGR-KDNLVHHFRNPRFELIRHDVVEPI-----LL--EVDQIYH 186 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~-l~r~~~~~-~~~~~~~~~~~~v~~~~~Dv~~~~-----~~--~iD~Vi~ 186 (263)
+|+|+||||+||||++++++|+++|++|++ +++..... ...........++.++.+|+.|.. +. ++|+|||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih 80 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH 80 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence 468999999999999999999999987554 44432211 111111112246778899998752 22 4899999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc---------CC-eEEEEcCcceecCCC--CCCcCCCCCCCCCCCC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV---------GA-KFLLTSTSEVYGDPL--EHPQKETYWGNVNPIG 254 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~---------~~-~iV~vSS~~vyg~~~--~~~~~E~~~~~~~p~~ 254 (263)
|||........+++...+++|+.|+.+++++|.+. +. ++|++||.++||... ..+++|+ .|..
T Consensus 81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~-----~~~~ 155 (355)
T PRK10217 81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTET-----TPYA 155 (355)
T ss_pred CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCC-----CCCC
Confidence 99875443334567889999999999999999762 33 899999999999542 3467887 4666
Q ss_pred cCccccccC
Q 024766 255 ELLAATAVV 263 (263)
Q Consensus 255 ~~~~Y~~sK 263 (263)
+.+.|+.||
T Consensus 156 p~s~Y~~sK 164 (355)
T PRK10217 156 PSSPYSASK 164 (355)
T ss_pred CCChhHHHH
Confidence 778899887
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-18 Score=159.58 Aligned_cols=147 Identities=22% Similarity=0.319 Sum_probs=105.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC----CCceEEEEcccccc-----ccCCCcEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR----NPRFELIRHDVVEP-----ILLEVDQIY 185 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~Dv~~~-----~~~~iD~Vi 185 (263)
..|+||||||+||||++++++|+++|++|++++|+....... ..... ..++.++.+|+.+. .+.++|+||
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~Vi 82 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKV-KHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVF 82 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHH-HHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEE
Confidence 356899999999999999999999999999998875433221 11111 13578889999875 345799999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEcCcceecCC-CCCC-cCCCCCCCCC----CCCcCc
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDP-LEHP-QKETYWGNVN----PIGELL 257 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-~iV~vSS~~vyg~~-~~~~-~~E~~~~~~~----p~~~~~ 257 (263)
|+|+.... .........+++|+.|+.+++++|++.+ . +||++||.++|+.. ...+ ++|++|...+ +..+.+
T Consensus 83 H~A~~~~~-~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~ 161 (351)
T PLN02650 83 HVATPMDF-ESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGW 161 (351)
T ss_pred EeCCCCCC-CCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccc
Confidence 99985431 1122235788999999999999999876 4 89999999777643 2233 5787653321 223456
Q ss_pred cccccC
Q 024766 258 AATAVV 263 (263)
Q Consensus 258 ~Y~~sK 263 (263)
.|+.||
T Consensus 162 ~Y~~sK 167 (351)
T PLN02650 162 MYFVSK 167 (351)
T ss_pred hHHHHH
Confidence 899887
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-19 Score=149.62 Aligned_cols=118 Identities=15% Similarity=0.046 Sum_probs=95.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~i 181 (263)
.++|.++||||+++||.+++++|++.|++|+++.|+.+..++...++ ....+.....|++|. .+.++
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~-~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~i 82 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEI-GAGAALALALDVTDRAAVEAAIEALPEEFGRI 82 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhh-ccCceEEEeeccCCHHHHHHHHHHHHHhhCcc
Confidence 45689999999999999999999999999999999877666655554 336788999999987 23569
Q ss_pred cEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcc
Q 024766 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSE 232 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~ 232 (263)
|++|||||..-..+. .++|+.++++|+.|.++..++. .+.+ .+||++||.+
T Consensus 83 DiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiA 142 (246)
T COG4221 83 DILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIA 142 (246)
T ss_pred cEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEecccc
Confidence 999999997544332 2368899999999999988875 3333 3999999964
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=156.73 Aligned_cols=147 Identities=24% Similarity=0.322 Sum_probs=106.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc----CCCceEEEEccccccc-----cCCCcEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF----RNPRFELIRHDVVEPI-----LLEVDQIY 185 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~Dv~~~~-----~~~iD~Vi 185 (263)
.+|+|+||||+||||++++++|+++|++|+++.|+...... ..... ...+++++.+|+++.. +.++|+||
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKK-TEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHH-HHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 46899999999999999999999999999988887554221 11111 1246888999998763 45799999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcCccee--cCC---CCCCcCCCCCCCCC-CCCcCc
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSEVY--GDP---LEHPQKETYWGNVN-PIGELL 257 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~-~iV~vSS~~vy--g~~---~~~~~~E~~~~~~~-p~~~~~ 257 (263)
|+|+.... ...+...+.+++|+.|+.+++++|++. ++ +||++||.++| +.+ .+.+++|++|..+. +..+.+
T Consensus 83 h~A~~~~~-~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~ 161 (322)
T PLN02986 83 HTASPVFF-TVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKN 161 (322)
T ss_pred EeCCCcCC-CCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhcccc
Confidence 99986422 122233457899999999999999885 55 99999998754 432 23467888764321 123557
Q ss_pred cccccC
Q 024766 258 AATAVV 263 (263)
Q Consensus 258 ~Y~~sK 263 (263)
.|++||
T Consensus 162 ~Y~~sK 167 (322)
T PLN02986 162 WYPLSK 167 (322)
T ss_pred chHHHH
Confidence 899887
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.7e-18 Score=155.59 Aligned_cols=146 Identities=23% Similarity=0.321 Sum_probs=103.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc----CCCceEEEEcccccc-----ccCCCcEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF----RNPRFELIRHDVVEP-----ILLEVDQIY 185 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~Dv~~~-----~~~~iD~Vi 185 (263)
++|+|+||||+||||++++++|+++|++|++++|+...... ..... ...+++++.+|+.++ .+.++|+||
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKK-TEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhh-HHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 36799999999999999999999999999999887543211 11111 124688899999875 356799999
Q ss_pred EccCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcCcc--eecCC---CCCCcCCCCCCCCC-CCCcC
Q 024766 186 HLACPASPVHYKYNP-VKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSE--VYGDP---LEHPQKETYWGNVN-PIGEL 256 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~-~~~~~~Nv~gt~~ll~~a~~~-~~-~iV~vSS~~--vyg~~---~~~~~~E~~~~~~~-p~~~~ 256 (263)
|+|+.... ...++ ...+++|+.|+.++++++++. ++ +||++||.+ +|+.. .+.+++|+.+..+. +....
T Consensus 82 h~A~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~~ 159 (322)
T PLN02662 82 HTASPFYH--DVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESK 159 (322)
T ss_pred EeCCcccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhccc
Confidence 99986431 22344 478899999999999999887 65 999999976 46532 23457777432110 11223
Q ss_pred ccccccC
Q 024766 257 LAATAVV 263 (263)
Q Consensus 257 ~~Y~~sK 263 (263)
+.|+.||
T Consensus 160 ~~Y~~sK 166 (322)
T PLN02662 160 LWYVLSK 166 (322)
T ss_pred chHHHHH
Confidence 5788776
|
|
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=154.19 Aligned_cols=135 Identities=24% Similarity=0.334 Sum_probs=104.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchh--hhhhhc-CCCceEEEEcccccc-----ccCCCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD--NLVHHF-RNPRFELIRHDVVEP-----ILLEVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~--~~~~~~-~~~~v~~~~~Dv~~~-----~~~~iD~Vi~ 186 (263)
.+++|+||||+||||++++++|+++||.|++..|++++.+. .+.+.. ...+..++.+|+.|. .+.++|.|||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH 84 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH 84 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence 57899999999999999999999999999999999877332 122222 134588999999876 5678999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEcCcce-ecC----CCCCCcCCCCCCCC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEV-YGD----PLEHPQKETYWGNV 250 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-~iV~vSS~~v-yg~----~~~~~~~E~~~~~~ 250 (263)
.|.+....... ...+.++.++.||.|++++|++.. + |||++||.++ ... ..+.+++|+.|.+.
T Consensus 85 ~Asp~~~~~~~-~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~ 154 (327)
T KOG1502|consen 85 TASPVDFDLED-PEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDL 154 (327)
T ss_pred eCccCCCCCCC-cHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcH
Confidence 99654432222 345789999999999999999998 4 9999999654 332 34568899988543
|
|
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=152.01 Aligned_cols=125 Identities=25% Similarity=0.283 Sum_probs=105.5
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc--CCCcEEEEccCCCCCCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL--LEVDQIYHLACPASPVH 195 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~--~~iD~Vi~~Ag~~~~~~ 195 (263)
++||||++|.+|.+|++.|. .+.+|+.+++.. +++.+.|-..+.+ .++|+|||+|+......
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~---------------~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~ 65 (281)
T COG1091 2 KILITGANGQLGTELRRALP-GEFEVIATDRAE---------------LDITDPDAVLEVIRETRPDVVINAAAYTAVDK 65 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC-CCceEEeccCcc---------------ccccChHHHHHHHHhhCCCEEEECcccccccc
Confidence 49999999999999999999 667999987642 2222223222222 25899999999988878
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 196 YKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 196 ~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.+.+++..+.+|..|+.|++++|++.|.++|++||..||....+.+|.|+ ++.+|.+.||.||
T Consensus 66 aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~-----D~~~P~nvYG~sK 128 (281)
T COG1091 66 AESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKET-----DTPNPLNVYGRSK 128 (281)
T ss_pred ccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCC-----CCCCChhhhhHHH
Confidence 88889999999999999999999999999999999999998888899999 5788888999998
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-18 Score=157.55 Aligned_cols=141 Identities=24% Similarity=0.293 Sum_probs=105.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag 189 (263)
++|+|+||||+||||++++++|.++|++|++++|........ .....+++.+|+.+. .+.++|+|||+|+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~Aa 94 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSE-----DMFCHEFHLVDLRVMENCLKVTKGVDHVFNLAA 94 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccccc-----ccccceEEECCCCCHHHHHHHHhCCCEEEEccc
Confidence 568999999999999999999999999999999854321110 011246778888764 3457999999998
Q ss_pred CCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCC----CCcCCCCCCCCCCCCcCccccccC
Q 024766 190 PASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLE----HPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 190 ~~~~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~----~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
....... ..++...+..|+.++.+++++|++.++ +||++||.++||.... .++.|++ ..|..+.+.|+.+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~---~~p~~p~s~Yg~sK 171 (370)
T PLN02695 95 DMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESD---AWPAEPQDAYGLEK 171 (370)
T ss_pred ccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCccc---CCCCCCCCHHHHHH
Confidence 6543222 234566788999999999999999886 9999999999996532 2355553 13667788999887
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-18 Score=167.84 Aligned_cols=146 Identities=27% Similarity=0.393 Sum_probs=109.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhC--CCeEEEEecCCc-cchhhhhhhcCCCceEEEEccccccc-------cCCCc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFT-GRKDNLVHHFRNPRFELIRHDVVEPI-------LLEVD 182 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~--G~~V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~Dv~~~~-------~~~iD 182 (263)
..++|+|+||||+||||++|+++|+++ |++|+++++... .....+.......+++++.+|+.|.. ..++|
T Consensus 3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D 82 (668)
T PLN02260 3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID 82 (668)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence 356789999999999999999999998 678998887421 11111111112356889999998752 14699
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEcCcceecCCCCCC---cCCCCCCCCCCCCcCc
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPLEHP---QKETYWGNVNPIGELL 257 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-~iV~vSS~~vyg~~~~~~---~~E~~~~~~~p~~~~~ 257 (263)
+|||+|+.........++.+.+++|+.|+.++++++++.+ . +||++||.++||.....+ ..|+ .|..|.+
T Consensus 83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~-----~~~~p~~ 157 (668)
T PLN02260 83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEA-----SQLLPTN 157 (668)
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCcccc-----CCCCCCC
Confidence 9999998755433344667888999999999999999887 4 999999999999765432 2444 4566778
Q ss_pred cccccC
Q 024766 258 AATAVV 263 (263)
Q Consensus 258 ~Y~~sK 263 (263)
.|+.+|
T Consensus 158 ~Y~~sK 163 (668)
T PLN02260 158 PYSATK 163 (668)
T ss_pred CcHHHH
Confidence 899887
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-18 Score=155.38 Aligned_cols=142 Identities=30% Similarity=0.444 Sum_probs=102.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCe-EEEEecCCc-cchhhhhhhcCCCceEEEEccccccc-----c--CCCcEEEEc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFT-GRKDNLVHHFRNPRFELIRHDVVEPI-----L--LEVDQIYHL 187 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~-V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~--~~iD~Vi~~ 187 (263)
++|+||||+||||++++++|+++|++ |+++++... ...+.........++.++.+|++|.. + .++|+|||+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL 80 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence 37999999999999999999999975 555554321 11122222212345778899998862 2 258999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc---------CC-eEEEEcCcceecCCCC----------CCcCCCCC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV---------GA-KFLLTSTSEVYGDPLE----------HPQKETYW 247 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~---------~~-~iV~vSS~~vyg~~~~----------~~~~E~~~ 247 (263)
||.........+++..+++|+.|+.+++++|++. +. ++|++||.++||.... .+++|+
T Consensus 81 A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~-- 158 (352)
T PRK10084 81 AAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTET-- 158 (352)
T ss_pred CcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCcccc--
Confidence 9875443334567889999999999999999864 33 8999999999985321 135565
Q ss_pred CCCCCCCcCccccccC
Q 024766 248 GNVNPIGELLAATAVV 263 (263)
Q Consensus 248 ~~~~p~~~~~~Y~~sK 263 (263)
.|..+.+.|+.||
T Consensus 159 ---~~~~p~~~Y~~sK 171 (352)
T PRK10084 159 ---TAYAPSSPYSASK 171 (352)
T ss_pred ---CCCCCCChhHHHH
Confidence 4677888999887
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.2e-18 Score=151.58 Aligned_cols=128 Identities=17% Similarity=0.212 Sum_probs=93.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 195 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~~ 195 (263)
.|+||||||+||||++|+++|+++|++|++..++.... +. +..|+.+ .++|+|||+||......
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~~~~~~~-~~------------v~~~l~~---~~~D~ViH~Aa~~~~~~ 72 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGSGRLENR-AS------------LEADIDA---VKPTHVFNAAGVTGRPN 72 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEEEecCccCCH-HH------------HHHHHHh---cCCCEEEECCcccCCCC
Confidence 46899999999999999999999999987543221111 00 1111211 26899999999765322
Q ss_pred ---CCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCC------CCCcCCCCCCCCCCCCcCccccccC
Q 024766 196 ---YKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL------EHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 196 ---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~------~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
...++.+.+++|+.|+.+++++|++.+++++++||.++|+... +.+++|++ .|..+.+.||.||
T Consensus 73 ~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~----~p~~~~s~Yg~sK 145 (298)
T PLN02778 73 VDWCESHKVETIRANVVGTLTLADVCRERGLVLTNYATGCIFEYDDAHPLGSGIGFKEED----TPNFTGSFYSKTK 145 (298)
T ss_pred chhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecceEeCCCCCCCcccCCCCCcCC----CCCCCCCchHHHH
Confidence 3457889999999999999999999988888888888987432 22467664 2444567899887
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.9e-19 Score=155.98 Aligned_cols=117 Identities=29% Similarity=0.422 Sum_probs=86.4
Q ss_pred EEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhh---cCCCce----EEEEcccccc-----ccC--CCcE
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH---FRNPRF----ELIRHDVVEP-----ILL--EVDQ 183 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~---~~~~~v----~~~~~Dv~~~-----~~~--~iD~ 183 (263)
||||||+|.||++|+++|++.+. +++++++++.+..+...+. ....++ ..+.+|+.|. .+. ++|+
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi 80 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI 80 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence 79999999999999999999986 7999999876654443333 233334 3458899887 334 7999
Q ss_pred EEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceec
Q 024766 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg 235 (263)
|||.|+..+....+++|.+++++|+.||.|++++|.++++ ++|++||..+..
T Consensus 81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~ 133 (293)
T PF02719_consen 81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVN 133 (293)
T ss_dssp EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS
T ss_pred EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCC
Confidence 9999998887778999999999999999999999999998 999999986543
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-19 Score=158.64 Aligned_cols=122 Identities=30% Similarity=0.396 Sum_probs=92.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----cc--CCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL--LEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~--~~iD~Vi~~Ag 189 (263)
|+|+||||+|+||++|.+.|.++|++|+.+.|. ..|+.|. .+ .++|+||||||
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~--------------------~~dl~d~~~~~~~~~~~~pd~Vin~aa 60 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS--------------------DLDLTDPEAVAKLLEAFKPDVVINCAA 60 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT--------------------CS-TTSHHHHHHHHHHH--SEEEE---
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch--------------------hcCCCCHHHHHHHHHHhCCCeEeccce
Confidence 589999999999999999999999999998664 3344432 11 25999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
...+...+.+++..+.+|+.++.+++++|.+.+.++|++||..||+...+.+++|++ +..|.+.||.+|
T Consensus 61 ~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG~~~~~y~E~d-----~~~P~~~YG~~K 129 (286)
T PF04321_consen 61 YTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDGDKGGPYTEDD-----PPNPLNVYGRSK 129 (286)
T ss_dssp ---HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-SSTSSSB-TTS---------SSHHHHHH
T ss_pred eecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcCCcccccccCC-----CCCCCCHHHHHH
Confidence 876666777899999999999999999999999999999999999888888899994 677889999886
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=147.97 Aligned_cols=136 Identities=33% Similarity=0.500 Sum_probs=109.3
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc-------CCCcEEEEccCCC
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL-------LEVDQIYHLACPA 191 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~-------~~iD~Vi~~Ag~~ 191 (263)
|+||||+||||.+++++|+++|++|+.+.|+.......... .++.++.+|+.+... .++|+|||+|+..
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~----~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~ 76 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKK----LNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFS 76 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHH----TTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSS
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccccc----ceEEEEEeeccccccccccccccCceEEEEeeccc
Confidence 79999999999999999999999999888865543322211 178899999987622 2579999999864
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.......+....++.|+.++.++++++++.++ ++|++||..+|+.....+++|++ +..+.+.|+.+|
T Consensus 77 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~~-----~~~~~~~Y~~~K 144 (236)
T PF01370_consen 77 SNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDEDS-----PINPLSPYGASK 144 (236)
T ss_dssp SHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETTS-----GCCHSSHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----cccccccccccc
Confidence 32122256788899999999999999999997 99999999999988788889994 557777788775
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.76 E-value=6e-18 Score=153.27 Aligned_cols=118 Identities=25% Similarity=0.381 Sum_probs=93.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----cCCCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----LLEVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~~~iD~Vi~ 186 (263)
+++|+|+||||+||||++++++|+++| ++|++++|+..... .+.......++.++.+|++|.. +.++|+|||
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~-~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih 80 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQW-EMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVH 80 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHH-HHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEE
Confidence 467899999999999999999999986 68999887644322 2222223356889999998863 456999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcc
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSE 232 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~ 232 (263)
+||.......+.++.+.+++|+.|+.++++++++.+. +||++||..
T Consensus 81 ~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~ 127 (324)
T TIGR03589 81 AAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDK 127 (324)
T ss_pred CcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 9997544334557788999999999999999999886 999999963
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-18 Score=148.38 Aligned_cols=135 Identities=15% Similarity=0.132 Sum_probs=105.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPIL------------ 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~~------------ 178 (263)
..++++++|||||++||.+++++|+++|++|+++.|+.++..+...++. ....++++.+|++++..
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~ 82 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG 82 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence 3567899999999999999999999999999999998887666555553 24678999999988621
Q ss_pred CCCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceecCCCCCCcCCCCCCC
Q 024766 179 LEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGN 249 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~ 249 (263)
..+|++|||||+.....+.+ ..++++++|+.+...+..+. .+.+. +||+|+|.+.|-
T Consensus 83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~-------------- 148 (265)
T COG0300 83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLI-------------- 148 (265)
T ss_pred CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcC--------------
Confidence 25999999999876654433 34678999999987776664 44544 999999988775
Q ss_pred CCCCCcCccccccC
Q 024766 250 VNPIGELLAATAVV 263 (263)
Q Consensus 250 ~~p~~~~~~Y~~sK 263 (263)
|....+.|++||
T Consensus 149 --p~p~~avY~ATK 160 (265)
T COG0300 149 --PTPYMAVYSATK 160 (265)
T ss_pred --CCcchHHHHHHH
Confidence 444556777766
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-18 Score=151.62 Aligned_cols=136 Identities=33% Similarity=0.494 Sum_probs=104.2
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCC-cEEEEccCCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEV-DQIYHLACPA 191 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~i-D~Vi~~Ag~~ 191 (263)
+||||||+||||++|+++|+++|++|++++|......... ..+..+.+|+++. ..... |+|||+|+..
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~------~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~ 75 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL------SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQS 75 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc------cccceeeecccchHHHHHHHhcCCCEEEEccccC
Confidence 4999999999999999999999999999998766543322 3556677776664 33345 9999999876
Q ss_pred CCCCCCC-CHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCC-CCCCcCCCCCCCCCCCCcCccccccC
Q 024766 192 SPVHYKY-NPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDP-LEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 192 ~~~~~~~-~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~-~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
....... ++...+.+|+.|+.+++++|++.++ +||+.||.++|+.. .+.+.+|+. .|..+.+.||.||
T Consensus 76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~----~~~~p~~~Yg~sK 146 (314)
T COG0451 76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDL----GPPRPLNPYGVSK 146 (314)
T ss_pred chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCccccc----CCCCCCCHHHHHH
Confidence 5444333 4667899999999999999999766 99998888887754 344778874 3555555898886
|
|
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-18 Score=151.58 Aligned_cols=121 Identities=25% Similarity=0.354 Sum_probs=97.2
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccC--CCcEEEEccCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLACP 190 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~--~iD~Vi~~Ag~ 190 (263)
+|+||||+||||++++++|+++|++|++++|. .+|+.+. .+. ++|+|||+||.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~--------------------~~d~~~~~~~~~~~~~~~~d~vi~~a~~ 60 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS--------------------QLDLTDPEALERLLRAIRPDAVVNTAAY 60 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc--------------------ccCCCCHHHHHHHHHhCCCCEEEECCcc
Confidence 48999999999999999999999999999874 1233322 233 46999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.........+...+++|+.|+.++++++++.+.++|++||.++|+.....+++|++ +..+.+.|+.+|
T Consensus 61 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~Ss~~vy~~~~~~~~~E~~-----~~~~~~~Y~~~K 128 (287)
T TIGR01214 61 TDVDGAESDPEKAFAVNALAPQNLARAAARHGARLVHISTDYVFDGEGKRPYREDD-----ATNPLNVYGQSK 128 (287)
T ss_pred ccccccccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecCCCCCCCCCCC-----CCCCcchhhHHH
Confidence 54333344677889999999999999999887899999999999876677888884 455677888776
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.7e-18 Score=149.83 Aligned_cols=141 Identities=33% Similarity=0.492 Sum_probs=105.5
Q ss_pred EEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCcc-chhhhhhhcCCCceEEEEccccccc-----cCC--CcEEEEc
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEPI-----LLE--VDQIYHL 187 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~Dv~~~~-----~~~--iD~Vi~~ 187 (263)
+|+||||||+||.+++++|+++| ++|++++|.... ..+.+........++++.+|+.|+. +.+ +|+|||+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~ 80 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF 80 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence 48999999999999999999987 689888764321 1222222222346788899998762 333 8999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEcCcceecCCCCC-CcCCCCCCCCCCCCcCccccccC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--AKFLLTSTSEVYGDPLEH-PQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~--~~iV~vSS~~vyg~~~~~-~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
|+........++++..+++|+.|+.++++++++.+ .++|++||.++||..... ++.|++ +..+.+.|+.+|
T Consensus 81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~-----~~~~~~~Y~~sK 154 (317)
T TIGR01181 81 AAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETT-----PLAPSSPYSASK 154 (317)
T ss_pred ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCC-----CCCCCCchHHHH
Confidence 98654433445678889999999999999998863 499999999999965433 577773 556677898876
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-18 Score=152.79 Aligned_cols=132 Identities=23% Similarity=0.331 Sum_probs=93.9
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccc------cccc-----CCCcEEEEc
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV------EPIL-----LEVDQIYHL 187 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~------~~~~-----~~iD~Vi~~ 187 (263)
|+||||+||||++|+++|++.|++++++.++...... .... ..++ ..|.. +..+ .++|+|||+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~-~~~~---~~~~--~~d~~~~~~~~~~~~~~~~~~~~d~Vih~ 75 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-FVNL---VDLD--IADYMDKEDFLAQIMAGDDFGDIEAIFHE 75 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchH-HHhh---hhhh--hhhhhhHHHHHHHHhcccccCCccEEEEC
Confidence 7999999999999999999999976666554322111 0000 0111 11211 1111 369999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
||..... ..+.+..+++|+.++.+++++|++.++++|++||.++||.....+.+|+ .+..|.+.||.||
T Consensus 76 A~~~~~~--~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK 144 (308)
T PRK11150 76 GACSSTT--EWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTDDFIEER-----EYEKPLNVYGYSK 144 (308)
T ss_pred ceecCCc--CCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcchHHhCcCCCCCCccC-----CCCCCCCHHHHHH
Confidence 9854432 2345678999999999999999998889999999999997655567776 3566667899887
|
|
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-18 Score=149.07 Aligned_cols=144 Identities=29% Similarity=0.348 Sum_probs=123.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhh-----hhhcCCCceEEEEcccccc-------ccCCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL-----VHHFRNPRFELIRHDVVEP-------ILLEVD 182 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~-----~~~~~~~~v~~~~~Dv~~~-------~~~~iD 182 (263)
++|++||||-||.-|+.|++.|++.|++|..+.|+.......- ..+..+.++.+..+|++|. ...++|
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd 80 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD 80 (345)
T ss_pred CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCch
Confidence 3689999999999999999999999999999998744332221 1122456799999999997 235799
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccc
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAA 259 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y 259 (263)
-|+|.|+......+.++|+.+.+++..|+.+++++.+..+ ++|...||+..||.....|++|+ +|+.|++.|
T Consensus 81 EIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~-----TPFyPrSPY 155 (345)
T COG1089 81 EIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPY 155 (345)
T ss_pred hheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccC-----CCCCCCCHH
Confidence 9999999888777888899999999999999999998765 38999999999999999999999 799999999
Q ss_pred cccC
Q 024766 260 TAVV 263 (263)
Q Consensus 260 ~~sK 263 (263)
+.+|
T Consensus 156 AvAK 159 (345)
T COG1089 156 AVAK 159 (345)
T ss_pred HHHH
Confidence 9987
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=149.66 Aligned_cols=141 Identities=33% Similarity=0.575 Sum_probs=108.4
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----c--CCCcEEEEccCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----L--LEVDQIYHLACP 190 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~--~~iD~Vi~~Ag~ 190 (263)
+|+||||+|+||++++++|+++|++|+++++......+..........+..+.+|+.++. + .++|+||||||.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~ 80 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGL 80 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccc
Confidence 489999999999999999999999999887643332222222111125778889988763 2 369999999997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
........++.+.+.+|+.++.++++++++.+. ++|++||.++||.....+++|++ |..+.+.|+.+|
T Consensus 81 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~~-----~~~~~~~y~~sK 149 (328)
T TIGR01179 81 IAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISEDS-----PLGPINPYGRSK 149 (328)
T ss_pred cCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCccccC-----CCCCCCchHHHH
Confidence 544444456678899999999999999998885 99999999999977666788884 556777888776
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=147.73 Aligned_cols=146 Identities=16% Similarity=0.053 Sum_probs=105.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~------------ 177 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|+.++..+...++. ....+.++.+|+.+..
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999997665444333332 2346888999998752
Q ss_pred cCCCcEEEEccCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHH----HcCCeEEEEcCcce-ecCCCCCCcCCCCCCC
Q 024766 178 LLEVDQIYHLACPASPVH---YKYNPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEV-YGDPLEHPQKETYWGN 249 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~---~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~iV~vSS~~v-yg~~~~~~~~E~~~~~ 249 (263)
...+|+||||||...... ..+.++..+++|+.|.+.+.+.+. +...+||++||.+. ++........+.
T Consensus 91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~---- 166 (313)
T PRK05854 91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWE---- 166 (313)
T ss_pred CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCccccccc----
Confidence 245999999999754322 235688899999999888877764 33349999999754 332222222222
Q ss_pred CCCCCcCccccccC
Q 024766 250 VNPIGELLAATAVV 263 (263)
Q Consensus 250 ~~p~~~~~~Y~~sK 263 (263)
.++.+...|+.||
T Consensus 167 -~~~~~~~~Y~~SK 179 (313)
T PRK05854 167 -RSYAGMRAYSQSK 179 (313)
T ss_pred -ccCcchhhhHHHH
Confidence 3556677899887
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-17 Score=155.56 Aligned_cols=127 Identities=21% Similarity=0.304 Sum_probs=97.1
Q ss_pred CccccCCCCEEEEEcCCChHHHHHHHHHHhCCC---eEEEEecCCccch--hhhh-hh-----c--------------CC
Q 024766 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRK--DNLV-HH-----F--------------RN 163 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~---~V~~l~r~~~~~~--~~~~-~~-----~--------------~~ 163 (263)
++...+++|+|+|||||||||++|+++|++.+. +|+++.|...... +.+. ++ + ..
T Consensus 4 ~i~~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~ 83 (491)
T PLN02996 4 SCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLIS 83 (491)
T ss_pred cHHHHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhh
Confidence 345568999999999999999999999998753 6789988654321 1111 11 0 01
Q ss_pred CceEEEEcccccc------------ccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEc
Q 024766 164 PRFELIRHDVVEP------------ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTS 229 (263)
Q Consensus 164 ~~v~~~~~Dv~~~------------~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~-~iV~vS 229 (263)
.++.++.+|++++ .+.++|+|||+|+... +..+++..+++|+.|+.+++++|++. +. ++|++|
T Consensus 84 ~kv~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vS 160 (491)
T PLN02996 84 EKVTPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN---FDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVS 160 (491)
T ss_pred cCEEEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccC---CcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 5789999999733 2346999999997543 44578889999999999999999886 44 899999
Q ss_pred CcceecCCC
Q 024766 230 TSEVYGDPL 238 (263)
Q Consensus 230 S~~vyg~~~ 238 (263)
|.+|||...
T Consensus 161 T~~vyG~~~ 169 (491)
T PLN02996 161 TAYVCGEKS 169 (491)
T ss_pred eeEEecCCC
Confidence 999999643
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.3e-17 Score=145.29 Aligned_cols=123 Identities=17% Similarity=0.159 Sum_probs=94.4
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhh---hcCCCceEEEEcccccc------------
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH---HFRNPRFELIRHDVVEP------------ 176 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~---~~~~~~v~~~~~Dv~~~------------ 176 (263)
....+|+|+||||+++||.+++.+|+++|.+++.+.|+.+..+....+ .....++.++.+|++|.
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~ 87 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIR 87 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHH
Confidence 356889999999999999999999999999988888876654433222 22223699999999886
Q ss_pred ccCCCcEEEEccCCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcceec
Q 024766 177 ILLEVDQIYHLACPASPVHYKY-----NPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 177 ~~~~iD~Vi~~Ag~~~~~~~~~-----~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vyg 235 (263)
.+.++|++|||||+.. ..+.+ +....|++|+.|+..+.+++ ++.+ .+||.+||++-+-
T Consensus 88 ~fg~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~ 155 (282)
T KOG1205|consen 88 HFGRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKM 155 (282)
T ss_pred hcCCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccccc
Confidence 4567999999999876 33322 24567899999988888776 4445 5999999986553
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.4e-17 Score=145.19 Aligned_cols=138 Identities=25% Similarity=0.381 Sum_probs=105.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 191 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~~ 191 (263)
++|+||||+|+||+++++.|+++|++|++++|+...... .....++.+.+|+.+. .+.++|+|||+|+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~ 75 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRN-----LEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADY 75 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccc-----cccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence 479999999999999999999999999999987543211 1223578889999875 345799999999743
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecC-CCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGD-PLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~-~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
. ....+++..+++|+.|+.++++++++.++ ++|++||.++||. ..+.+.+|+.+. .|....+.|+.+|
T Consensus 76 ~--~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~--~~~~~~~~Y~~sK 145 (328)
T TIGR03466 76 R--LWAPDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPS--SLDDMIGHYKRSK 145 (328)
T ss_pred c--cCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCC--CcccccChHHHHH
Confidence 2 23456788899999999999999998876 9999999999995 445577887432 2223345677665
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.3e-17 Score=146.12 Aligned_cols=148 Identities=14% Similarity=0.035 Sum_probs=102.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~------------ 177 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ...++.++.+|+.+..
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999987554333222221 2356888999998762
Q ss_pred cCCCcEEEEccCCCCCCC--CCCCHHHHHHHHHHHHHH----HHHHHHHcC-CeEEEEcCcceecCCCCCCcCCCCCCCC
Q 024766 178 LLEVDQIYHLACPASPVH--YKYNPVKTIKTNVMGTLN----MLGLAKRVG-AKFLLTSTSEVYGDPLEHPQKETYWGNV 250 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~--~~~~~~~~~~~Nv~gt~~----ll~~a~~~~-~~iV~vSS~~vyg~~~~~~~~E~~~~~~ 250 (263)
+.++|+||||||...... ..+.++..+++|+.|+.. +++.+++.+ .+||++||.+.+... ..+.++.. ..
T Consensus 93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~-~~~~~~~~--~~ 169 (306)
T PRK06197 93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRA-AIHFDDLQ--WE 169 (306)
T ss_pred CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccC-CCCccccC--cc
Confidence 246999999999754332 234578889999999555 455555554 499999997644211 11112211 11
Q ss_pred CCCCcCccccccC
Q 024766 251 NPIGELLAATAVV 263 (263)
Q Consensus 251 ~p~~~~~~Y~~sK 263 (263)
.++.+...|+.||
T Consensus 170 ~~~~~~~~Y~~SK 182 (306)
T PRK06197 170 RRYNRVAAYGQSK 182 (306)
T ss_pred cCCCcHHHHHHHH
Confidence 3455677899887
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-17 Score=149.97 Aligned_cols=151 Identities=18% Similarity=0.214 Sum_probs=108.4
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC-------CCceEEEEccccccc-----cC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-------NPRFELIRHDVVEPI-----LL 179 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~-------~~~v~~~~~Dv~~~~-----~~ 179 (263)
...++|+|+||||+||||++++++|+++|++|+++.|+.+... .+..... ...+.++.+|++|.. +.
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~-~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKE-KLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 3567899999999999999999999999999998877643322 1111100 135788899998863 45
Q ss_pred CCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcCc--ceecC--CCC--CCcCCCCCCC-C
Q 024766 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTS--EVYGD--PLE--HPQKETYWGN-V 250 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~-~iV~vSS~--~vyg~--~~~--~~~~E~~~~~-~ 250 (263)
++|.|||+|+...............++|+.|+.++++++++. ++ ++|++||. .+||. +.. .+++|+.|.. .
T Consensus 128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~ 207 (367)
T PLN02686 128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDES 207 (367)
T ss_pred hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChh
Confidence 799999999875443321122345678999999999999886 55 99999996 57874 222 3477876543 2
Q ss_pred CCCCcCccccccC
Q 024766 251 NPIGELLAATAVV 263 (263)
Q Consensus 251 ~p~~~~~~Y~~sK 263 (263)
.+..+.+.|+.||
T Consensus 208 ~~~~p~~~Y~~sK 220 (367)
T PLN02686 208 FCRDNKLWYALGK 220 (367)
T ss_pred hcccccchHHHHH
Confidence 3566777899887
|
|
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.9e-17 Score=144.49 Aligned_cols=147 Identities=19% Similarity=0.212 Sum_probs=102.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch--hhhhhhc-CCCceEEEEcccccc-----ccCCCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK--DNLVHHF-RNPRFELIRHDVVEP-----ILLEVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~--~~~~~~~-~~~~v~~~~~Dv~~~-----~~~~iD~Vi~ 186 (263)
.+|+|+||||+||||++++++|+++|++|+++.|+..... +.+.... ...++.++.+|++|. .+.++|.|+|
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~~ 84 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLFC 84 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 4578999999999999999999999999999988533211 1111111 134688889999876 4567999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcCccee--cCC---CCCCcCCCCCCCCC-CCCcCcc
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSEVY--GDP---LEHPQKETYWGNVN-PIGELLA 258 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~-~iV~vSS~~vy--g~~---~~~~~~E~~~~~~~-p~~~~~~ 258 (263)
.++.... ....+++.+++|+.|+.++++++.+. +. +||++||.+++ +.. ...+++|+.|.+.. +......
T Consensus 85 ~~~~~~~--~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~ 162 (297)
T PLN02583 85 CFDPPSD--YPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLW 162 (297)
T ss_pred eCccCCc--ccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcccH
Confidence 8754322 12246788999999999999999876 44 99999998664 311 23467887653222 1122236
Q ss_pred ccccC
Q 024766 259 ATAVV 263 (263)
Q Consensus 259 Y~~sK 263 (263)
|+.||
T Consensus 163 Y~~sK 167 (297)
T PLN02583 163 HALAK 167 (297)
T ss_pred HHHHH
Confidence 88776
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.8e-17 Score=140.10 Aligned_cols=123 Identities=16% Similarity=0.102 Sum_probs=92.8
Q ss_pred ccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------
Q 024766 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------ 177 (263)
+...+++|+++||||+|+||++++++|+++|++|++++|+..+..+...+. ..++.++.+|+++..
T Consensus 4 ~~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (255)
T PRK05717 4 PNPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL--GENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred CCcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 445678999999999999999999999999999999988654333322221 346778899998752
Q ss_pred cCCCcEEEEccCCCCCC--C----CCCCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCccee
Q 024766 178 LLEVDQIYHLACPASPV--H----YKYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVY 234 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~--~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vy 234 (263)
+..+|+||||||..... . ..+++++.+++|+.|+.++++++.+ .+.+||++||...+
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~ 148 (255)
T PRK05717 82 FGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR 148 (255)
T ss_pred hCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc
Confidence 23589999999975432 1 1224678899999999999999853 23489999997554
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.9e-17 Score=142.62 Aligned_cols=122 Identities=12% Similarity=0.017 Sum_probs=91.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+||||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|.. +..
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 457899999999999999999999999999999987554444333332 2346788999998762 235
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcC-------CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG-------AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~-------~~iV~vSS~~vyg 235 (263)
+|+||||||........ ++++..+++|+.|+.++++++ .+.+ .+||++||.+.+.
T Consensus 84 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~ 153 (287)
T PRK06194 84 VHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL 153 (287)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc
Confidence 89999999986543322 345677999999999987774 3332 3799999986664
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-17 Score=146.52 Aligned_cols=124 Identities=23% Similarity=0.244 Sum_probs=94.2
Q ss_pred EEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----cc--CCCcEEEEccCCCC
Q 024766 120 VVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL--LEVDQIYHLACPAS 192 (263)
Q Consensus 120 lVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~--~~iD~Vi~~Ag~~~ 192 (263)
|||||+||||++|++.|+++|++|+++.+.. .+|+.+. .+ .++|+|||||+...
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~~-------------------~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~ 61 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTHK-------------------ELDLTRQADVEAFFAKEKPTYVILAAAKVG 61 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeeccc-------------------cCCCCCHHHHHHHHhccCCCEEEEeeeeec
Confidence 6999999999999999999999887664321 2455544 22 25899999998644
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCc-cccccC
Q 024766 193 PVH-YKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELL-AATAVV 263 (263)
Q Consensus 193 ~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~-~Y~~sK 263 (263)
... ...++...+++|+.|+.+++++|++.+. ++|++||..|||.....+++|+++.+ .|..+.+ .|+.||
T Consensus 62 ~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~sK 134 (306)
T PLN02725 62 GIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLT-GPPEPTNEWYAIAK 134 (306)
T ss_pred ccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhcc-CCCCCCcchHHHHH
Confidence 222 2345677899999999999999999986 89999999999977778899986432 2344433 488876
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-16 Score=143.96 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=91.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
..+|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ...++.++.+|+.+.. ...
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 83 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP 83 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 357899999999999999999999999999999987554433333221 2346888899998762 124
Q ss_pred CcEEEEccCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHH----cC---CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKR----VG---AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~---~~iV~vSS~~vyg 235 (263)
+|+||||||+..... ..+.++..+++|+.|+.++++++.. .+ .+||++||...+.
T Consensus 84 iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~~~~~ 150 (322)
T PRK07453 84 LDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTVTANP 150 (322)
T ss_pred ccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcccccCc
Confidence 999999999753311 2234678899999999999888653 22 3999999977653
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.7e-16 Score=137.98 Aligned_cols=131 Identities=12% Similarity=0.092 Sum_probs=103.6
Q ss_pred ccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------c
Q 024766 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------I 177 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~ 177 (263)
+....+|+.|+||||++++|++++.+|+++|..+++.|.+.+...+...+..+..++..+.+|+++. .
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHh
Confidence 3446788999999999999999999999999999999999888877777665445899999999876 3
Q ss_pred cCCCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCc-ceecCCCCC
Q 024766 178 LLEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTS-EVYGDPLEH 240 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~-~vyg~~~~~ 240 (263)
.+++|++|||||+.......+ ..++++++|+.|.++..++. .+.. .+||.++|+ +..|.+.-.
T Consensus 112 ~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~gl~ 184 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAGLA 184 (300)
T ss_pred cCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCccch
Confidence 457999999999876655333 35778999999998877775 3333 499999995 455544433
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.6e-17 Score=144.14 Aligned_cols=132 Identities=24% Similarity=0.366 Sum_probs=96.4
Q ss_pred EEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----c----cCCCcEEEEcc
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----I----LLEVDQIYHLA 188 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~----~~~iD~Vi~~A 188 (263)
|+||||+||||+++++.|+++|+ +|++++|..... ..... ....+..|+.++ . +.++|+|||+|
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~--~~~~~----~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A 74 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH--KFLNL----ADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQG 74 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch--hhhhh----hheeeeccCcchhHHHHHHhhccCCCCEEEECc
Confidence 68999999999999999999998 788887654321 11111 012344455443 1 14799999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
+.... ...++...+++|+.|+.+++++|++.++++|++||.++||... .+..|++ .+..+.+.|+.||
T Consensus 75 ~~~~~--~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~v~~SS~~vy~~~~-~~~~e~~----~~~~p~~~Y~~sK 142 (314)
T TIGR02197 75 ACSDT--TETDGEYMMENNYQYSKRLLDWCAEKGIPFIYASSAATYGDGE-AGFREGR----ELERPLNVYGYSK 142 (314)
T ss_pred cccCc--cccchHHHHHHHHHHHHHHHHHHHHhCCcEEEEccHHhcCCCC-CCccccc----CcCCCCCHHHHHH
Confidence 86432 2456788899999999999999998888999999999999764 3556654 2234667788876
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=144.39 Aligned_cols=144 Identities=26% Similarity=0.390 Sum_probs=109.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCcc--chhhhhhhcCCCceEEEEcccccc-----ccCCCcEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTG--RKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIY 185 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~--~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi 185 (263)
++.+++||||+||+|++|+.+|++++ .+|+++|..+.. ..++... +....+.++.+|+.+. .+.++ .|+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~-~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv 80 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTG-FRSGRVTVILGDLLDANSISNAFQGA-VVV 80 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhc-ccCCceeEEecchhhhhhhhhhccCc-eEE
Confidence 46799999999999999999999998 699999876542 1111111 1367899999999886 45567 888
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCC-CCcCCCCCCCCCCCCcCccccccC
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLE-HPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~-~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
|||+...+.-...+.+..+++||.||.+++++|++.++ ++|++||.+|..+... ...+|+.+ .|......|+.||
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p---~p~~~~d~Y~~sK 157 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLP---YPLKHIDPYGESK 157 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCC---CccccccccchHH
Confidence 88875444434446889999999999999999999998 9999999999775544 44566642 3455557888876
|
|
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-17 Score=144.30 Aligned_cols=139 Identities=27% Similarity=0.322 Sum_probs=85.3
Q ss_pred EEcCCChHHHHHHHHHHhCCC--eEEEEecCCccc--hhhhhhhc------------CCCceEEEEcccccccc------
Q 024766 121 VTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGR--KDNLVHHF------------RNPRFELIRHDVVEPIL------ 178 (263)
Q Consensus 121 VTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~--~~~~~~~~------------~~~~v~~~~~Dv~~~~~------ 178 (263)
|||||||+|++|+++|++++. +|+|+.|..+.. .+.+.+.+ ...++.++.+|++++.+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 799999999999999999987 899999976431 12221111 15799999999998743
Q ss_pred -----CCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCC-----CCC
Q 024766 179 -----LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKE-----TYW 247 (263)
Q Consensus 179 -----~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E-----~~~ 247 (263)
.++|+|||||+. ..+..++.+.+++||.||.++++.|.+... +|+|+||+.+.+...+. ..| ...
T Consensus 81 ~~~L~~~v~~IiH~Aa~---v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~-~~~~~~~~~~~ 156 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAAS---VNFNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGT-IEEKVYPEEED 156 (249)
T ss_dssp HHHHHHH--EEEE--SS----SBS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT---SSS-HHH--
T ss_pred hhccccccceeeecchh---hhhcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCc-ccccccccccc
Confidence 359999999954 445556777889999999999999986554 99999996565544332 211 111
Q ss_pred CCCCCCCcCccccccC
Q 024766 248 GNVNPIGELLAATAVV 263 (263)
Q Consensus 248 ~~~~p~~~~~~Y~~sK 263 (263)
....+......|.+||
T Consensus 157 ~~~~~~~~~~gY~~SK 172 (249)
T PF07993_consen 157 DLDPPQGFPNGYEQSK 172 (249)
T ss_dssp EEE--TTSEE-HHHHH
T ss_pred cchhhccCCccHHHHH
Confidence 1223455566898887
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-16 Score=140.09 Aligned_cols=123 Identities=19% Similarity=0.125 Sum_probs=93.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|.. +.
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999999999999987655443333321 2346788899998762 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vyg 235 (263)
.+|+||||||......+. +++++.+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 83 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~ 148 (275)
T PRK05876 83 HVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLV 148 (275)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhcc
Confidence 689999999975443332 2356778999999999998864 333 4899999987664
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.5e-16 Score=142.83 Aligned_cols=143 Identities=24% Similarity=0.282 Sum_probs=103.6
Q ss_pred EEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccch--hhhhhhc--------C-C-CceEEEEccccccc------
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRK--DNLVHHF--------R-N-PRFELIRHDVVEPI------ 177 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~--~~~~~~~--------~-~-~~v~~~~~Dv~~~~------ 177 (263)
+|+|||||||||++++++|+++| .+|+++.|..+... +.+.+.+ . . .++.++.+|++++.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 58999999999999999999998 67999998755221 1111100 0 1 47889999987642
Q ss_pred -----cCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCC
Q 024766 178 -----LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (263)
Q Consensus 178 -----~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~ 251 (263)
..++|+|||||+... ....++..+++|+.|+.++++++.+.+. +||++||.++|+.....+..|++.....
T Consensus 81 ~~~~~~~~~d~vih~a~~~~---~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~~ 157 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVN---WVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVTP 157 (367)
T ss_pred HHHHHHhhCCEEEeCCcEec---cCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCcccccccccc
Confidence 246999999997543 2345677789999999999999998876 6999999999986544444555432222
Q ss_pred CCCcCccccccC
Q 024766 252 PIGELLAATAVV 263 (263)
Q Consensus 252 p~~~~~~Y~~sK 263 (263)
+....+.|+.||
T Consensus 158 ~~~~~~~Y~~sK 169 (367)
T TIGR01746 158 PPGLAGGYAQSK 169 (367)
T ss_pred ccccCCChHHHH
Confidence 333456788876
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=141.54 Aligned_cols=144 Identities=17% Similarity=0.075 Sum_probs=100.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...+. ..+.++.+|++|.. ..+
T Consensus 23 ~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l---~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~ 99 (315)
T PRK06196 23 DLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGI---DGVEVVMLDLADLESVRAFAERFLDSGRR 99 (315)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---hhCeEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 457889999999999999999999999999999998765443333222 23778899998762 246
Q ss_pred CcEEEEccCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcceecCCCCCCcCCCCCCCCCCC
Q 024766 181 VDQIYHLACPASPVH--YKYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~--~~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~ 253 (263)
+|+||||||...... ..+.++..+++|+.|+.++++.+ ++.+ .+||++||.+..... ..+++.....++
T Consensus 100 iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~----~~~~~~~~~~~~ 175 (315)
T PRK06196 100 IDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSP----IRWDDPHFTRGY 175 (315)
T ss_pred CCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCC----CCccccCccCCC
Confidence 999999999754321 23457888999999987777654 4444 499999997543211 111111112345
Q ss_pred CcCccccccC
Q 024766 254 GELLAATAVV 263 (263)
Q Consensus 254 ~~~~~Y~~sK 263 (263)
.+...|+.||
T Consensus 176 ~~~~~Y~~SK 185 (315)
T PRK06196 176 DKWLAYGQSK 185 (315)
T ss_pred ChHHHHHHHH
Confidence 5667888876
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.3e-16 Score=139.22 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=93.4
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------ 177 (263)
...+++|+++||||+|+||.+++++|+++|++|++++|+.+..++...+.. ....+.++.+|+.|..
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 114 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKR 114 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999997654333222221 1345778899998762
Q ss_pred cCCCcEEEEccCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVHYK------YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~------~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
+.++|+||||||........ ++++..+++|+.|+.++++++. +.+. +||++||.++++
T Consensus 115 ~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 183 (293)
T PRK05866 115 IGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLS 183 (293)
T ss_pred cCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC
Confidence 34799999999975443322 2346789999999999888753 4443 999999976654
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.7e-16 Score=135.57 Aligned_cols=113 Identities=19% Similarity=0.195 Sum_probs=88.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+... ..++..+.+|++++. +..
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~----------~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS----------YNDVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc----------cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3578999999999999999999999999999999986432 125778899998762 246
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
+|+||||||........+ ++++.+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 73 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 136 (258)
T PRK06398 73 IDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFA 136 (258)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhcc
Confidence 999999999754333322 3567789999999999888643 33 4999999986664
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.4e-16 Score=139.17 Aligned_cols=123 Identities=19% Similarity=0.138 Sum_probs=92.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.-....+..+.+|++|.. +..
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGG 85 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999999876544333332212345666679998752 256
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vyg 235 (263)
+|+||||||......+. +++++.+++|+.|+.++++.+.. .+.+||++||.+.+.
T Consensus 86 id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~ 148 (296)
T PRK05872 86 IDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFA 148 (296)
T ss_pred CCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcC
Confidence 99999999975433322 23577899999999999988743 234899999987664
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.6e-16 Score=137.22 Aligned_cols=121 Identities=12% Similarity=0.124 Sum_probs=90.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||++++++|+++|++|++++|..........+. ...++..+.+|++++. +..+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 84 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEA-LGRKFHFITADLIQQKDIDSIVSQAVEVMGHI 84 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHH-cCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 57899999999999999999999999999999887532211111111 2356788999998762 3469
Q ss_pred cEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vyg 235 (263)
|++|||||....... .+++++.+++|+.|+.++++.+. +.+ .+||++||...+.
T Consensus 85 D~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~ 148 (251)
T PRK12481 85 DILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQ 148 (251)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcC
Confidence 999999997543332 23567889999999999888763 232 4899999987654
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-16 Score=137.44 Aligned_cols=123 Identities=19% Similarity=0.132 Sum_probs=91.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.....++.++.+|++|.. +.+
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~ 94 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGT 94 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999999875443332222212346889999998762 246
Q ss_pred CcEEEEccCCCCCC--CC----CCCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcc-eec
Q 024766 181 VDQIYHLACPASPV--HY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSE-VYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~--~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~-vyg 235 (263)
+|+||||||..... .. .++++.++++|+.|+.++++++.+ .+ .+||++||.+ .++
T Consensus 95 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~ 161 (280)
T PLN02253 95 LDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIG 161 (280)
T ss_pred CCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhccc
Confidence 99999999975321 11 234678899999999999887753 22 3899998854 454
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.6e-16 Score=134.89 Aligned_cols=121 Identities=17% Similarity=0.099 Sum_probs=91.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC-CCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+....+.. ..++..+.+|+.+.. +..
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP 87 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999999999999999876544333222211 345788899998752 245
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~----~-~~iV~vSS~~vy 234 (263)
+|+||||||........+ .+++++++|+.++.++++++.+. + .+||++||...+
T Consensus 88 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~ 150 (255)
T PRK07523 88 IDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSA 150 (255)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhc
Confidence 899999999754433322 35677899999999999987643 3 389999997543
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-16 Score=136.57 Aligned_cols=117 Identities=21% Similarity=0.255 Sum_probs=88.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCcE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQ 183 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD~ 183 (263)
.|+++||||+||||++++++|+++|++|++++|+.+...+ +... ...++.++.+|++|.. ..++|+
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~-~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 79 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDD-LKAR-YGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDV 79 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHh-ccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4689999999999999999999999999999987543322 2111 1346888999998762 245899
Q ss_pred EEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCccee
Q 024766 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vy 234 (263)
||||||........ +++++.+++|+.|+.++++++ ++.+. +||++||.+.+
T Consensus 80 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~ 139 (276)
T PRK06482 80 VVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQ 139 (276)
T ss_pred EEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccc
Confidence 99999976543322 235678899999999999997 44444 89999997543
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.9e-16 Score=139.03 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=92.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc-hhhhhhhc--CCCceEEEEccccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHHF--RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~-~~~~~~~~--~~~~v~~~~~Dv~~~~------------ 177 (263)
.+++|+++||||+|+||++++++|+++|++|+++++..+.. .+...+.+ ...++.++.+|+.+..
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999887654322 12222211 2446778899998752
Q ss_pred cCCCcEEEEccCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
+.++|+||||||...... ..+++++.+++|+.|+.++++++.+. +.+||++||...|.
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~ 197 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQ 197 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccC
Confidence 346999999999643221 12357888999999999999998753 34999999988775
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.7e-16 Score=135.66 Aligned_cols=122 Identities=13% Similarity=0.105 Sum_probs=91.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc-----------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI-----------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~-----------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.++..+...+.. ...++..+.+|++|+. +.
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 3678999999999999999999999999999999987554433332221 1346888999998762 24
Q ss_pred CCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vy 234 (263)
.+|++|||||......+ .+++++.+++|+.+...+++.+ ++.+ .+||++||.+.+
T Consensus 85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~ 148 (263)
T PRK08339 85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIK 148 (263)
T ss_pred CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCcccc
Confidence 59999999997543332 2346788999999988877665 3444 499999998754
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-16 Score=135.45 Aligned_cols=119 Identities=12% Similarity=0.077 Sum_probs=87.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCcE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQ 183 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD~ 183 (263)
+|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.....++.++.+|++++. ...+|+
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~ 81 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV 81 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence 47999999999999999999999999999999875543322222211126888999998752 234899
Q ss_pred EEEccCCCCCCCCC-----CCHHHHHHHHHHHHHHHHHH----HHHcC-CeEEEEcCccee
Q 024766 184 IYHLACPASPVHYK-----YNPVKTIKTNVMGTLNMLGL----AKRVG-AKFLLTSTSEVY 234 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~-----~~~~~~~~~Nv~gt~~ll~~----a~~~~-~~iV~vSS~~vy 234 (263)
||||||........ ++++..+++|+.|+.++++. +++.+ .+||++||...+
T Consensus 82 lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~ 142 (257)
T PRK07024 82 VIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGV 142 (257)
T ss_pred EEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhc
Confidence 99999975432211 24678899999999998774 44444 389999996543
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.7e-16 Score=135.76 Aligned_cols=122 Identities=13% Similarity=0.071 Sum_probs=92.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc------------c
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~------------~ 178 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ...++.++.+|++++. +
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 568899999999999999999999999999999997655444333332 2456888999998762 2
Q ss_pred CCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
..+|+||||||....... .++++..+++|+.++.++++++.. .+ .+||++||...+.
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 150 (260)
T PRK07063 85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFK 150 (260)
T ss_pred CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhcc
Confidence 469999999996433221 235678899999999999888643 33 3899999975543
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.6e-16 Score=134.70 Aligned_cols=122 Identities=19% Similarity=0.144 Sum_probs=91.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||.+++++|+++|++|++++|..+...+...+.. ...++..+.+|+++.. +..
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGG 83 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999999999987544332222221 2335678899998763 236
Q ss_pred CcEEEEccCCCCCC---C----CCCCHHHHHHHHHHHHHHHHHHHHHc-----CCeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPV---H----YKYNPVKTIKTNVMGTLNMLGLAKRV-----GAKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~---~----~~~~~~~~~~~Nv~gt~~ll~~a~~~-----~~~iV~vSS~~vyg 235 (263)
+|+||||||..... . ..+.+++.+++|+.++.++++++.+. +.+||++||.++|.
T Consensus 84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~ 150 (250)
T PRK07774 84 IDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAWL 150 (250)
T ss_pred CCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEecccccC
Confidence 89999999974321 1 11235677899999999999987643 24899999987764
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.2e-16 Score=133.69 Aligned_cols=122 Identities=15% Similarity=0.105 Sum_probs=91.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++++++||||+|+||.+++++|+++|++|++++|+.....+.........++.++.+|+.++. +..+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 82 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV 82 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999999999999986544433332222356888999998762 2358
Q ss_pred cEEEEccCCCCCCC-C----CCCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 182 DQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
|+||||||...... + .+.+++.+++|+.|+.++++.+.+ .+ .+||++||.+.+.
T Consensus 83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~ 146 (251)
T PRK07231 83 DILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLR 146 (251)
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcC
Confidence 99999998643322 1 224577899999998888877653 33 4899999987765
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.9e-16 Score=136.06 Aligned_cols=121 Identities=16% Similarity=0.120 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------ccCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+ +...+...+.. ...++..+.+|++++ .+..
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGR 82 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 568899999999999999999999999999999987 43333333321 234688899999876 2346
Q ss_pred CcEEEEccCCCCC-CCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCCeEEEEcCcceec
Q 024766 181 VDQIYHLACPASP-VHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~~iV~vSS~~vyg 235 (263)
+|+||||||.... .... +.+++.+++|+.|+..+++++. +.+.+||++||.+.+.
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 146 (272)
T PRK08589 83 VDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQA 146 (272)
T ss_pred cCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEeCchhhcC
Confidence 8999999997532 1221 2356788999999988877753 3345999999976553
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-16 Score=134.38 Aligned_cols=121 Identities=16% Similarity=0.127 Sum_probs=91.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+.+|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++..+.+|++++. +.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGR 82 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999987654333222221 1356788999998762 246
Q ss_pred CcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCccee
Q 024766 181 VDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vy 234 (263)
+|+||||||.... ... .+++++.+++|+.|+.++++++.+ .+.+||++||...+
T Consensus 83 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~ 145 (258)
T PRK07890 83 VDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLR 145 (258)
T ss_pred ccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhc
Confidence 8999999986433 111 234678899999999999999854 23489999997654
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.6e-16 Score=133.35 Aligned_cols=121 Identities=14% Similarity=0.036 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.++..+...+.. ...++.++.+|+.++. +..
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 467899999999999999999999999999999997655443333221 2346788899998762 246
Q ss_pred CcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCccee
Q 024766 181 VDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vy 234 (263)
+|+||||||.... ... .+++++.+++|+.++.++++++ ++.+ .+||++||...+
T Consensus 84 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~ 147 (254)
T PRK07478 84 LDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGH 147 (254)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhh
Confidence 9999999997532 121 1346788999999988876654 3343 389999997655
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-15 Score=135.18 Aligned_cols=119 Identities=14% Similarity=0.046 Sum_probs=89.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVD 182 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD 182 (263)
.+|+++||||+|+||++++++|+++|++|++++|+.+.... +... ...++..+.+|++|.. +..+|
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~-l~~~-~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d 80 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARAD-FEAL-HPDRALARLLDVTDFDAIDAVVADAEATFGPID 80 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHH-HHhh-cCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence 46789999999999999999999999999999987544322 2111 2346778899998762 23589
Q ss_pred EEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 183 QIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
+||||||........+ .+.+.+++|+.|+.++++++. +.+ .+||++||.+.+.
T Consensus 81 ~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~ 142 (277)
T PRK06180 81 VLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLI 142 (277)
T ss_pred EEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccC
Confidence 9999999754333322 346678999999999999853 333 3899999976553
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-15 Score=134.07 Aligned_cols=114 Identities=20% Similarity=0.182 Sum_probs=88.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVD 182 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD 182 (263)
++++++||||+|+||++++++|+++|++|++++|+.+... ....+.++.+|+.|+. +..+|
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d 75 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAA-------PIPGVELLELDVTDDASVQAAVDEVIARAGRID 75 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-------ccCCCeeEEeecCCHHHHHHHHHHHHHhCCCCC
Confidence 3578999999999999999999999999999998754322 1235778899998762 34589
Q ss_pred EEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
+||||||........ ++++..+++|+.|+.++++.+ ++.+. +||++||...+.
T Consensus 76 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 137 (270)
T PRK06179 76 VLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFL 137 (270)
T ss_pred EEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccC
Confidence 999999975543332 245788999999999998885 44454 999999976554
|
|
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.4e-16 Score=139.48 Aligned_cols=144 Identities=24% Similarity=0.251 Sum_probs=106.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch--hhhhhh---------cCCCceEEEEcccccccc------
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK--DNLVHH---------FRNPRFELIRHDVVEPIL------ 178 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~--~~~~~~---------~~~~~v~~~~~Dv~~~~~------ 178 (263)
+++++||||||+|.+|+.+|+.+-. +|+|+.|..+... +.+... ....+++++.+|+.++.+
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~ 80 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT 80 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence 4799999999999999999999865 9999998755221 111111 135689999999987643
Q ss_pred -----CCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCC----CC
Q 024766 179 -----LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETY----WG 248 (263)
Q Consensus 179 -----~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~----~~ 248 (263)
+++|.|||||+ .+++...+.+....||.||..++++|..... .++||||++|+........+++. ..
T Consensus 81 ~~~La~~vD~I~H~gA---~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~ 157 (382)
T COG3320 81 WQELAENVDLIIHNAA---LVNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPT 157 (382)
T ss_pred HHHHhhhcceEEecch---hhcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCcccccccccc
Confidence 35999999995 4555667889999999999999999988765 69999999998754333332222 11
Q ss_pred CCCCCCcCccccccC
Q 024766 249 NVNPIGELLAATAVV 263 (263)
Q Consensus 249 ~~~p~~~~~~Y~~sK 263 (263)
...-....++|+.||
T Consensus 158 ~~~~~~~~~GY~~SK 172 (382)
T COG3320 158 RNVGQGLAGGYGRSK 172 (382)
T ss_pred ccccCccCCCcchhH
Confidence 222345557999987
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.9e-16 Score=150.59 Aligned_cols=141 Identities=28% Similarity=0.337 Sum_probs=103.7
Q ss_pred CEEEEEcCCChHHHHHHHHHH--hCCCeEEEEecCCccch-hhhhhhcCCCceEEEEccccccc----------cCCCcE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLI--DRGDEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEPI----------LLEVDQ 183 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll--~~G~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~Dv~~~~----------~~~iD~ 183 (263)
|+|+|||||||||++|+++|+ +.|++|++++|+..... +.........+++++.+|+.++. +.++|+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~D~ 80 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDIDH 80 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCCCE
Confidence 479999999999999999999 58999999998543211 11111112357889999998742 257999
Q ss_pred EEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCcccccc
Q 024766 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAV 262 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~s 262 (263)
||||||.... .......+++|+.|+.+++++|++.+. +||++||.++||... .++.|+++. .+..+.+.|+.|
T Consensus 81 Vih~Aa~~~~---~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~-~~~~e~~~~--~~~~~~~~Y~~s 154 (657)
T PRK07201 81 VVHLAAIYDL---TADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYE-GVFREDDFD--EGQGLPTPYHRT 154 (657)
T ss_pred EEECceeecC---CCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCcc-Cccccccch--hhcCCCCchHHH
Confidence 9999985432 345677789999999999999999876 999999999998543 345665432 123334568877
Q ss_pred C
Q 024766 263 V 263 (263)
Q Consensus 263 K 263 (263)
|
T Consensus 155 K 155 (657)
T PRK07201 155 K 155 (657)
T ss_pred H
Confidence 6
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=147.29 Aligned_cols=137 Identities=20% Similarity=0.244 Sum_probs=104.1
Q ss_pred CCccccCCCCEEEEEcCCChHHHHHHHHHHhCCC---eEEEEecCCccc--hhhhh-hhc-------------------C
Q 024766 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGR--KDNLV-HHF-------------------R 162 (263)
Q Consensus 108 ~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~---~V~~l~r~~~~~--~~~~~-~~~-------------------~ 162 (263)
..+...+++|+|+|||||||||++|+++|++.+. +|+++.|..... .+.+. ++. .
T Consensus 111 ~~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~ 190 (605)
T PLN02503 111 IGIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFM 190 (605)
T ss_pred cchhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccc
Confidence 3455678999999999999999999999998764 678998864332 11111 110 1
Q ss_pred CCceEEEEccccccc-----------cCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEc
Q 024766 163 NPRFELIRHDVVEPI-----------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--AKFLLTS 229 (263)
Q Consensus 163 ~~~v~~~~~Dv~~~~-----------~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~--~~iV~vS 229 (263)
..++.++.+|++++. ..++|+|||+|+.. .+..+++..+++|+.|+.+++++|++.+ .++|++|
T Consensus 191 ~~Ki~~v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v---~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vS 267 (605)
T PLN02503 191 LSKLVPVVGNVCESNLGLEPDLADEIAKEVDVIINSAANT---TFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVS 267 (605)
T ss_pred cccEEEEEeeCCCcccCCCHHHHHHHHhcCCEEEECcccc---ccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEcc
Confidence 346889999998863 24599999999654 3456789999999999999999998875 3899999
Q ss_pred CcceecCCCCCCcCCCCCC
Q 024766 230 TSEVYGDPLEHPQKETYWG 248 (263)
Q Consensus 230 S~~vyg~~~~~~~~E~~~~ 248 (263)
|++|||...+ .+.|..++
T Consensus 268 TayVyG~~~G-~i~E~~y~ 285 (605)
T PLN02503 268 TAYVNGQRQG-RIMEKPFR 285 (605)
T ss_pred CceeecCCCC-eeeeeecC
Confidence 9999997543 56666543
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=133.91 Aligned_cols=120 Identities=14% Similarity=0.111 Sum_probs=91.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++++++||||+|+||.+++++|+++|++|++++|+.+...+...... ...++.++.+|++++. +.+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR 87 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 568899999999999999999999999999999997554333322221 2346788899998763 246
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH-----cC-CeEEEEcCcce
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR-----VG-AKFLLTSTSEV 233 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~-----~~-~~iV~vSS~~v 233 (263)
+|+||||||........ ++++.++++|+.|+.++++++.+ .+ .+||++||...
T Consensus 88 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~ 150 (263)
T PRK07814 88 LDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMG 150 (263)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccc
Confidence 99999999864433222 34678899999999999999853 23 38999999643
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=132.08 Aligned_cols=118 Identities=18% Similarity=0.235 Sum_probs=90.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++.++.+|+.++. +..+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i 81 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL--GERARFIATDITDDAAIERAVATVVARFGRV 81 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 56789999999999999999999999999999999765433332222 346788999998762 3468
Q ss_pred cEEEEccCCCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCcce
Q 024766 182 DQIYHLACPASPVHY---KYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEV 233 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~---~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~v 233 (263)
|+||||||....... .+++++.+++|+.++.++++.+.. .+.+||++||.+.
T Consensus 82 d~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~ 140 (261)
T PRK08265 82 DILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISA 140 (261)
T ss_pred CEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhh
Confidence 999999996433222 234678899999999999887643 2248999999654
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=135.10 Aligned_cols=115 Identities=16% Similarity=0.164 Sum_probs=85.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------c-CCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------L-LEV 181 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~-~~i 181 (263)
.+|+++||||+|+||.+++++|+++|++|++++|+.+...+ +. ...++.+.+|++|.. . ..+
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~-l~----~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~i 77 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAA-LE----AEGLEAFQLDYAEPESIAALVAQVLELSGGRL 77 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HH----HCCceEEEccCCCHHHHHHHHHHHHHHcCCCc
Confidence 46799999999999999999999999999999987544322 11 225778899998752 1 358
Q ss_pred cEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHH----HHHHHHHcCC-eEEEEcCccee
Q 024766 182 DQIYHLACPASPVHYKY----NPVKTIKTNVMGTLN----MLGLAKRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~----ll~~a~~~~~-~iV~vSS~~vy 234 (263)
|+||||||........+ +++..+++|+.|+.+ +++.+++.+. +||++||...+
T Consensus 78 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~ 139 (277)
T PRK05993 78 DALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGL 139 (277)
T ss_pred cEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhc
Confidence 99999999765443332 346789999999554 5555666654 99999997544
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=134.32 Aligned_cols=123 Identities=16% Similarity=0.169 Sum_probs=91.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++..+.+|+.+.. +.
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999999999999987544333322221 1346788899998752 24
Q ss_pred CCcEEEEccCCCCCCCC-------------------CCCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHY-------------------KYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~-------------------~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vyg 235 (263)
.+|+||||||....... .+++++.+++|+.++..+++.+ ++.+ .+||++||...+.
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~ 166 (278)
T PRK08277 87 PCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFT 166 (278)
T ss_pred CCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcC
Confidence 69999999996432211 1246778999999998777664 3333 4899999987765
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=131.96 Aligned_cols=144 Identities=17% Similarity=0.218 Sum_probs=96.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh---cCCCceEEEEccccccc------------c
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~Dv~~~~------------~ 178 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. .....+.++.+|+.|+. +
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 81 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKY 81 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHc
Confidence 46789999999999999999999999999999998765543333222 12345667789998762 2
Q ss_pred CCCcEEEEccCCCCC---CCC-C---CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceecCCCCCCcCCCC
Q 024766 179 LEVDQIYHLACPASP---VHY-K---YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDPLEHPQKETY 246 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~---~~~-~---~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg~~~~~~~~E~~ 246 (263)
..+|+||||||.... ..+ + +.+...+++|+.++.++++++. +.+. +||++||.+.+..+.... .|.
T Consensus 82 ~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~-~~~- 159 (256)
T PRK09186 82 GKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFEI-YEG- 159 (256)
T ss_pred CCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccchh-ccc-
Confidence 348999999975321 111 1 2356778999999888776653 3443 999999976543332211 222
Q ss_pred CCCCCCCCcCccccccC
Q 024766 247 WGNVNPIGELLAATAVV 263 (263)
Q Consensus 247 ~~~~~p~~~~~~Y~~sK 263 (263)
.+......|++||
T Consensus 160 ----~~~~~~~~Y~~sK 172 (256)
T PRK09186 160 ----TSMTSPVEYAAIK 172 (256)
T ss_pred ----cccCCcchhHHHH
Confidence 1333334688776
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-15 Score=133.88 Aligned_cols=119 Identities=16% Similarity=0.124 Sum_probs=90.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVD 182 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD 182 (263)
.+|+++||||+|+||++++++|+++|++|++++|+.+...+. .+. ....+.++.+|+++.. +..+|
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~-~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 79 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADL-AEK-YGDRLLPLALDVTDRAAVFAAVETAVEHFGRLD 79 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHh-ccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 457999999999999999999999999999999875543222 222 1345778889998752 24689
Q ss_pred EEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
+||||||........ +++++.+++|+.++.++++.+ ++.+. +||++||.+.+.
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~ 141 (275)
T PRK08263 80 IVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGIS 141 (275)
T ss_pred EEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcC
Confidence 999999976543322 356788999999998888875 44443 899999977665
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=133.00 Aligned_cols=119 Identities=19% Similarity=0.078 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++++++||||+|+||++++++|+++|++|++++|+.+...+..... ..+.++.+|+.++. ...+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAEL---GLVVGGPLDVTDPASFAAFLDAVEADLGPI 79 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---ccceEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 45789999999999999999999999999999988654433222221 15778889998762 2468
Q ss_pred cEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
|++|||||........+ .+++++++|+.|+.++++.+. +.+. +||++||.+.+.
T Consensus 80 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 142 (273)
T PRK07825 80 DVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKI 142 (273)
T ss_pred CEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccC
Confidence 99999999754433222 356788999999999887753 4444 899999976543
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-15 Score=131.88 Aligned_cols=118 Identities=19% Similarity=0.159 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||.+++++|+++|++|++++++.+...+.+. ...+.++.+|++++. +.++
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 80 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELR----EKGVFTIKCDVGNRDQVKKSKEVVEKEFGRV 80 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH----hCCCeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 567899999999999999999999999999988765443222222 124778899998762 2469
Q ss_pred cEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vyg 235 (263)
|+||||||......+ .+++++.+++|+.|+.++++.+ ++.+ .+||++||...++
T Consensus 81 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~ 143 (255)
T PRK06463 81 DVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIG 143 (255)
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCC
Confidence 999999997533222 2246788999999977765554 3333 4999999987765
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=131.90 Aligned_cols=121 Identities=13% Similarity=0.120 Sum_probs=90.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+........... ...++..+.+|+++.. ..++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 81 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEA-LGRRFLSLTADLSDIEAIKALVDSAVEEFGHI 81 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHh-cCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 67899999999999999999999999999999998642111111111 1346888999998762 2469
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~vyg 235 (263)
|+||||||........ +++++.+++|+.++.++++.+.+ .+ .+||++||...|.
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~ 145 (248)
T TIGR01832 82 DILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQ 145 (248)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhcc
Confidence 9999999975443322 24677899999999999988743 33 3899999987775
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=131.18 Aligned_cols=122 Identities=14% Similarity=0.073 Sum_probs=89.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEE-ecCCccchhhhhhhc-CCCceEEEEcccccccc-------------
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-DNFFTGRKDNLVHHF-RNPRFELIRHDVVEPIL------------- 178 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l-~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~~------------- 178 (263)
+++++++||||+|+||.+++++|+++|++|+++ .|+.+...+...... ...++.++.+|+.|...
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 83 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence 567899999999999999999999999998775 454433322222221 23467889999988621
Q ss_pred -----CCCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHc--C-CeEEEEcCcceec
Q 024766 179 -----LEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRV--G-AKFLLTSTSEVYG 235 (263)
Q Consensus 179 -----~~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~--~-~~iV~vSS~~vyg 235 (263)
.++|+||||||........+ .++..+++|+.|+.++++.+.+. . .++|++||..++.
T Consensus 84 ~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~ 152 (254)
T PRK12746 84 IRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRL 152 (254)
T ss_pred cccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcC
Confidence 25899999999754433222 24667889999999999988653 2 3899999987765
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=130.14 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=88.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+. ......+.++.+|+.+.. +..+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 76 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE-------TVDGRPAEFHAADVRDPDQVAALVDAIVERHGRL 76 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh-------hhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 568999999999999999999999999999999986543 112446788899998752 2458
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----c-C-CeEEEEcCccee
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----V-G-AKFLLTSTSEVY 234 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~-~-~~iV~vSS~~vy 234 (263)
|+||||||........ +.+++.+++|+.|+.++++.+.. . + .+||++||...+
T Consensus 77 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~ 139 (252)
T PRK07856 77 DVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGR 139 (252)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccC
Confidence 9999999965432222 23578899999999999998753 2 2 489999997654
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=130.26 Aligned_cols=122 Identities=17% Similarity=0.072 Sum_probs=91.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.+...+.........++..+.+|++|+. +..+
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 82 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL 82 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5688999999999999999999999999999999876544433333323456889999998762 2469
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcce-ec
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEV-YG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~v-yg 235 (263)
|+||||||........ +++++.+++|+.++.++++.+ ++.+. +||++||... ++
T Consensus 83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~ 146 (252)
T PRK06138 83 DVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAG 146 (252)
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccC
Confidence 9999999975433222 235667899999998877765 34443 8999999744 44
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-15 Score=130.57 Aligned_cols=121 Identities=18% Similarity=0.027 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+++...+...... ...++.++.+|+.+.. ...
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 567899999999999999999999999999999997654433333221 2345778899998752 235
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHH----HHHHHHHH-HHcCC-eEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMG----TLNMLGLA-KRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~g----t~~ll~~a-~~~~~-~iV~vSS~~vy 234 (263)
+|+||||||....... .+.++..+++|+.| +.++++.+ +..+. +||++||...+
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~ 148 (262)
T PRK13394 85 VDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSH 148 (262)
T ss_pred CCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhc
Confidence 8999999997543222 22356778999999 45555555 54444 99999996543
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=131.20 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+.+|+++||||+|+||.+++++|+++|++|++++|+.+...+..... ..++.++.+|++++. +..+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEI--GPAAIAVSLDVTRQDSIDRIVAAAVERFGGI 81 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 55789999999999999999999999999999998765443322222 345788899998762 2469
Q ss_pred cEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc------CCeEEEEcCcc
Q 024766 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV------GAKFLLTSTSE 232 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~------~~~iV~vSS~~ 232 (263)
|+||||||....... .+++++.+++|+.++.++++++... +.+||++||..
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~ 142 (257)
T PRK07067 82 DILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQA 142 (257)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHH
Confidence 999999997543222 2346778999999999999987532 24899999953
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=131.15 Aligned_cols=120 Identities=13% Similarity=0.092 Sum_probs=90.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEVD 182 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~iD 182 (263)
+++++||||+|+||.+++++|+++|++|++++|+.....+...... ...++.++.+|+.+.. +.++|
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 80 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID 80 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence 4689999999999999999999999999999987554333222221 2346888899998762 24689
Q ss_pred EEEEccCCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCcceec
Q 024766 183 QIYHLACPASPVHYKYN-----PVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYG 235 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~-----~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vyg 235 (263)
+||||||........+. +.+.+++|+.|+.++++.+.. .+.+||++||...+.
T Consensus 81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~ 142 (263)
T PRK06181 81 ILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLT 142 (263)
T ss_pred EEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccC
Confidence 99999997554333322 567799999999999998743 334899999977664
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-15 Score=130.99 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=88.2
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~ 179 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.... ....+.++.+|+.++. +.
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 76 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD--------LPEGVEFVAADLTTAEGCAAVARAVLERLG 76 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh--------cCCceeEEecCCCCHHHHHHHHHHHHHHcC
Confidence 346789999999999999999999999999999999874421 1235778899998762 24
Q ss_pred CCcEEEEccCCCCCC--C----CCCCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPV--H----YKYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~--~----~~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
.+|+||||||..... . ..+++++.+++|+.|+.++++.+ ++.+. +||++||...+.
T Consensus 77 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~ 143 (260)
T PRK06523 77 GVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRL 143 (260)
T ss_pred CCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccC
Confidence 689999999964211 1 12346788999999998887665 33443 899999986654
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-15 Score=130.42 Aligned_cols=122 Identities=16% Similarity=0.085 Sum_probs=90.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.+ ...++..+.+|+.++. +
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 84 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAEL 84 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999987543222222211 1346778899998762 3
Q ss_pred CCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vy 234 (263)
..+|+||||||....... .+++++.+++|+.|+.++++++. +.+ .+||++||.+.+
T Consensus 85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~ 149 (254)
T PRK06114 85 GALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGI 149 (254)
T ss_pred CCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhc
Confidence 458999999997543322 23467889999999998887753 333 389999997543
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=130.53 Aligned_cols=121 Identities=17% Similarity=0.070 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ...++..+.+|+.++. ...
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999999999999999998665443333322 2457888999998762 236
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vy 234 (263)
+|+||||||........+ .++..+++|+.|+.++++.+ ++.+. +||++||...+
T Consensus 82 ~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~ 144 (258)
T PRK12429 82 VDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGL 144 (258)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhc
Confidence 899999998654433222 34567889999966666654 44444 89999997544
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-15 Score=137.00 Aligned_cols=122 Identities=13% Similarity=0.123 Sum_probs=92.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+..++...+.. ...++.++.+|++|.. +..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 567899999999999999999999999999999987655443333221 2446778889998752 256
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
+|++|||||......+.+ ++++.+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 85 iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~ 148 (330)
T PRK06139 85 IDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFA 148 (330)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcC
Confidence 999999999765444333 356779999999999887753 333 3899999976553
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=134.35 Aligned_cols=123 Identities=18% Similarity=0.152 Sum_probs=91.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc-chhhhhhhc--CCCceEEEEccccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG-RKDNLVHHF--RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~-~~~~~~~~~--~~~~v~~~~~Dv~~~~------------ 177 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|..+. ..+.+.+.. ...++.++.+|+++..
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 125 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKA 125 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999988765322 222222221 2346778899998752
Q ss_pred cCCCcEEEEccCCCCC-CC----CCCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASP-VH----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~-~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
+..+|++|||||.... .. ..+++++.+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 126 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~ 191 (294)
T PRK07985 126 LGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQ 191 (294)
T ss_pred hCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhcc
Confidence 3468999999986422 11 12356788999999999999988653 34899999987775
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-15 Score=130.86 Aligned_cols=119 Identities=21% Similarity=0.120 Sum_probs=90.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-------------cCCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-------------LLEVD 182 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-------------~~~iD 182 (263)
+|+++||||+|+||++++++|+++|++|++++|+.+...+.... ....++.++.+|+.+.. ...+|
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id 79 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAE-LGAGNAWTGALDVTDRAAWDAALADFAAATGGRLD 79 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH-hcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCC
Confidence 47899999999999999999999999999999876543332222 23457889999998751 34689
Q ss_pred EEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCc-ceec
Q 024766 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTS-EVYG 235 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~-~vyg 235 (263)
+||||||......+. ++++..+++|+.|+.++++++. ..+ .+||++||. +.||
T Consensus 80 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~ 142 (260)
T PRK08267 80 VLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYG 142 (260)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcC
Confidence 999999976543322 2467789999999999988874 333 489999996 4555
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-15 Score=132.36 Aligned_cols=121 Identities=18% Similarity=0.153 Sum_probs=90.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc-----------cCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI-----------LLE 180 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~-----------~~~ 180 (263)
++|+++||||+|+||++++++|+++|++|++++|+.+...+...... ...++.++.+|+.|+. +..
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 81 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR 81 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999987654433322211 1346889999998863 245
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCc-ceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTS-EVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~-~vyg 235 (263)
+|+||||||........ +++++.+++|+.|+.++++.+ ++.+. +||++||. +.+|
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~ 146 (280)
T PRK06914 82 IDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVG 146 (280)
T ss_pred eeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCC
Confidence 89999999975543322 245677899999999988885 44444 89999996 4444
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-15 Score=130.29 Aligned_cols=121 Identities=14% Similarity=0.049 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.. ..+...+.. ...++..+.+|+++.. +..
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGR 84 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 56789999999999999999999999999999998642 222222221 2346778899998751 246
Q ss_pred CcEEEEccCCCCC-CC----CCCCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASP-VH----YKYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~-~~----~~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
+|+||||||.... .. ..+++++.+++|+.++.++++.+ ++.+. +||++||...++
T Consensus 85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~ 149 (260)
T PRK12823 85 IDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRG 149 (260)
T ss_pred CeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccC
Confidence 9999999985321 11 12346778899999988766654 34443 899999987764
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-15 Score=130.40 Aligned_cols=121 Identities=16% Similarity=0.184 Sum_probs=91.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+.. +...+.. ...++.++.+|++++. +.
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFG 82 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 46788999999999999999999999999999999876543 2222221 2456888999998762 23
Q ss_pred CCcEEEEccCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vy 234 (263)
.+|+||||||.......+ ++++..+++|+.++.++++.+.+ .+.+||++||...+
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~ 144 (258)
T PRK08628 83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTAL 144 (258)
T ss_pred CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhc
Confidence 689999999964333222 34677899999999999888643 23489999996554
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-15 Score=128.79 Aligned_cols=121 Identities=19% Similarity=0.176 Sum_probs=89.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~ 179 (263)
+++|+++||||+|+||.+++++|+++|++|+++.++.....+.....+ ...++.++.+|+.++. +.
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFG 83 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 457899999999999999999999999999877654333222222221 2346888999998762 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vy 234 (263)
.+|+||||||........ +.+++.+++|+.++.++++++.. .+ .+||++||...+
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~ 147 (247)
T PRK12935 84 KVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQ 147 (247)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhc
Confidence 589999999975543322 35678899999999999998753 22 389999996443
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.6e-15 Score=130.36 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=87.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
.|+++||||+|+||++++++|+++|++|++++|+.....+...+.+ ...++.++.+|++++. +..+
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRI 81 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence 3689999999999999999999999999999986443222222221 2346888999998862 2469
Q ss_pred cEEEEccCCCCCC--CC----CCCHHHHHHHHHHHHHHHHHHHHHc-----C-----C-eEEEEcCccee
Q 024766 182 DQIYHLACPASPV--HY----KYNPVKTIKTNVMGTLNMLGLAKRV-----G-----A-KFLLTSTSEVY 234 (263)
Q Consensus 182 D~Vi~~Ag~~~~~--~~----~~~~~~~~~~Nv~gt~~ll~~a~~~-----~-----~-~iV~vSS~~vy 234 (263)
|+||||||..... .. .+.+++.+++|+.|+.++++.+.+. + . +||++||...+
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~ 151 (256)
T PRK12745 82 DCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAI 151 (256)
T ss_pred CEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhc
Confidence 9999999864321 11 2346778999999999998887432 1 2 69999997654
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=131.94 Aligned_cols=120 Identities=18% Similarity=0.157 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.+...+.. ... ..++..+.+|+.+.. +..+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 81 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLR-QRF-GDHVLVVEGDVTSYADNQRAVDQTVDAFGKL 81 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HHh-CCcceEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 56789999999999999999999999999999998754433222 221 345778899998752 2469
Q ss_pred cEEEEccCCCCCC-CC-C---C----CHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCcceec
Q 024766 182 DQIYHLACPASPV-HY-K---Y----NPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~-~~-~---~----~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vyg 235 (263)
|++|||||+.... .. + + .+++.+++|+.++.++++++.. .+.+||++||.+.+.
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~ 148 (263)
T PRK06200 82 DCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFY 148 (263)
T ss_pred CEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcC
Confidence 9999999974321 11 1 1 2567789999999998888753 334899999987654
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=132.75 Aligned_cols=114 Identities=14% Similarity=0.110 Sum_probs=85.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVD 182 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD 182 (263)
++|+++||||+|+||++++++|+++|++|++++|+.++..+. ....+.++.+|++|.. ..++|
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~-----~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id 76 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDL-----ASLGVHPLSLDVTDEASIKAAVDTIIAEEGRID 76 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-----HhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 468999999999999999999999999999999875443221 1224778889998762 23699
Q ss_pred EEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHH----HHHHcCC-eEEEEcCcce
Q 024766 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLG----LAKRVGA-KFLLTSTSEV 233 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~----~a~~~~~-~iV~vSS~~v 233 (263)
+||||||........ ++++..+++|+.|+.++++ .+++.+. +||++||.+.
T Consensus 77 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~ 136 (273)
T PRK06182 77 VLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGG 136 (273)
T ss_pred EEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhh
Confidence 999999975443322 3467889999999666555 4555554 9999999754
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-15 Score=129.06 Aligned_cols=122 Identities=16% Similarity=0.106 Sum_probs=89.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~ 179 (263)
..+|+++||||+|+||++++++|+++|++|++++++.....+.+...+ ...++..+.+|++|.. +.
T Consensus 7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 86 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG 86 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999888765433322222221 2456888999998752 24
Q ss_pred CCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~~iV~vSS~~vyg 235 (263)
.+|+||||||....... .+.+++.+++|+.|+.++++.+... + .++|+++|...+.
T Consensus 87 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~ 151 (258)
T PRK09134 87 PITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWN 151 (258)
T ss_pred CCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcC
Confidence 58999999997543222 2246788999999999999987543 2 3788888865543
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=147.82 Aligned_cols=127 Identities=16% Similarity=0.176 Sum_probs=92.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEE-EEecCCccchhhhhhhcCCCceEEEEcccccccc--CCCcEEEEccCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVI-VIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL--LEVDQIYHLACP 190 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~-~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~--~~iD~Vi~~Ag~ 190 (263)
...|+||||||+||||++|+++|.++|++|. ...+. . +.+.....+ .++|+|||+|+.
T Consensus 378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~~~~l-~------------------d~~~v~~~i~~~~pd~Vih~Aa~ 438 (668)
T PLN02260 378 KPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYGKGRL-E------------------DRSSLLADIRNVKPTHVFNAAGV 438 (668)
T ss_pred CCCceEEEECCCchHHHHHHHHHHhCCCeEEeecccc-c------------------cHHHHHHHHHhhCCCEEEECCcc
Confidence 4557899999999999999999999999884 22110 0 001111111 268999999997
Q ss_pred CCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCC------CCCCcCCCCCCCCCCCCcCccccc
Q 024766 191 ASPV---HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP------LEHPQKETYWGNVNPIGELLAATA 261 (263)
Q Consensus 191 ~~~~---~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~------~~~~~~E~~~~~~~p~~~~~~Y~~ 261 (263)
.... ..+.++...+++|+.|+.+++++|++.++++|++||.+||+.. .+.++.|++ .|..+.+.||.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~Ss~~v~~~~~~~~~~~~~p~~E~~----~~~~~~~~Yg~ 514 (668)
T PLN02260 439 TGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNFATGCIFEYDAKHPEGSGIGFKEED----KPNFTGSFYSK 514 (668)
T ss_pred cCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEEcccceecCCcccccccCCCCCcCC----CCCCCCChhhH
Confidence 6432 2355788999999999999999999999888999999998742 134778875 23334578998
Q ss_pred cC
Q 024766 262 VV 263 (263)
Q Consensus 262 sK 263 (263)
||
T Consensus 515 sK 516 (668)
T PLN02260 515 TK 516 (668)
T ss_pred HH
Confidence 87
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-15 Score=129.14 Aligned_cols=118 Identities=16% Similarity=0.150 Sum_probs=87.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEVD 182 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~iD 182 (263)
+|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ...++.++.+|++++. +.++|
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 81 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN 81 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 6799999999999999999999999999999987544333222221 1356788999998762 24699
Q ss_pred EEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCcce
Q 024766 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEV 233 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~v 233 (263)
+||||||........ +++++.+++|+.|+.++++.+.+ .+ .+||++||...
T Consensus 82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~ 142 (256)
T PRK08643 82 VVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAG 142 (256)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccc
Confidence 999999874332222 23577899999999887777643 22 48999999654
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.7e-15 Score=127.89 Aligned_cols=122 Identities=18% Similarity=0.170 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhh---hhc--CCCceEEEEccccccc-----------
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV---HHF--RNPRFELIRHDVVEPI----------- 177 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~---~~~--~~~~v~~~~~Dv~~~~----------- 177 (263)
+++|+++||||+|+||++++++|+++|++|++++|......+... ... ...++.++.+|+.+..
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 83 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVE 83 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 467899999999999999999999999999998765333222221 111 2346888999998762
Q ss_pred -cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH-----HcC-CeEEEEcCcceec
Q 024766 178 -LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK-----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~-----~~~-~~iV~vSS~~vyg 235 (263)
...+|+||||||......+. +++...+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 84 ~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~ 152 (249)
T PRK12827 84 EFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVR 152 (249)
T ss_pred HhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcC
Confidence 24689999999976533322 2356788999999999999987 334 3899999976653
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-15 Score=129.68 Aligned_cols=122 Identities=17% Similarity=0.122 Sum_probs=90.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...... ...++..+.+|+.+.. +..
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR 84 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 567899999999999999999999999999999997654333222221 2346888999998752 246
Q ss_pred CcEEEEccCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vyg 235 (263)
+|+||||||...... ..+++++.+++|+.++.++++++ .+.+ .+||++||...+.
T Consensus 85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~ 149 (253)
T PRK06172 85 LDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLG 149 (253)
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcc
Confidence 899999999743222 12356778999999998877654 3333 3899999987665
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-15 Score=127.89 Aligned_cols=122 Identities=17% Similarity=0.154 Sum_probs=91.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~ 179 (263)
+++|+++||||+|+||++++++|+++|++|+++.++.....+...... ...++.++.+|+.+.. +.
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 83 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFG 83 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcC
Confidence 456799999999999999999999999999887776554433332221 2456888999997762 24
Q ss_pred CCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
++|+|||+||....... .+.+...+++|+.++.++++.+ ++.+. ++|++||...+.
T Consensus 84 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~ 148 (249)
T PRK12825 84 RIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLP 148 (249)
T ss_pred CCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 68999999996544332 2245778999999999999887 34444 999999987664
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-15 Score=135.95 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=91.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+..++...+.. ...++..+.+|++|.. +..
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 567899999999999999999999999999999987654433332221 2456788999998762 346
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vyg 235 (263)
+|++|||||......+. +++++.+++|+.|+.++.+.+ ++.+ .+||++||...|.
T Consensus 86 iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~ 149 (334)
T PRK07109 86 IDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYR 149 (334)
T ss_pred CCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhcc
Confidence 99999999975433322 245677899999987766554 4443 3899999988775
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.9e-15 Score=129.32 Aligned_cols=121 Identities=21% Similarity=0.159 Sum_probs=91.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...... ...++.++.+|+.|.. +..
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999999999997554333332222 2345888999998752 236
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vy 234 (263)
+|+||||||....... .+++.+.+++|+.++.++++.+. +.+ .+||++||...+
T Consensus 84 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~ 146 (251)
T PRK12826 84 LDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGP 146 (251)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhh
Confidence 8999999987554222 23457789999999999998873 333 389999998766
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=129.28 Aligned_cols=120 Identities=16% Similarity=0.151 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++..+.+|+.+.. +..+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAEL--GESALVIRADAGDVAAQKALAQALAEAFGRL 81 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 45789999999999999999999999999999988654333222222 345778888887642 2468
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH---cCCeEEEEcC-cceec
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR---VGAKFLLTST-SEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~---~~~~iV~vSS-~~vyg 235 (263)
|+||||||........ +++++.+++|+.|+.++++++.+ .+.++|++|| .+.||
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~ 143 (249)
T PRK06500 82 DAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIG 143 (249)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccC
Confidence 9999999975433322 34678899999999999999864 2347777777 45565
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=129.42 Aligned_cols=121 Identities=16% Similarity=0.144 Sum_probs=90.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ...++.++.+|+++.. +..
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 88 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK 88 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 568999999999999999999999999999999887554333222221 2346778899998762 246
Q ss_pred CcEEEEccCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vy 234 (263)
+|+||||||......++ +++++.+++|+.|+.++++.+. +.+ .+||++||.+..
T Consensus 89 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~ 150 (255)
T PRK06113 89 VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAE 150 (255)
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEeccccc
Confidence 89999999975433332 3456779999999999999875 233 389999997543
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-15 Score=128.81 Aligned_cols=122 Identities=18% Similarity=0.154 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...... ...++.++.+|+.+.. +..
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999999999987654333222221 2356888999998752 235
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
+|+||||||........ +.+++.+++|+.++.++++++. +.+. +||++||.+.+.
T Consensus 81 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~ 144 (250)
T TIGR03206 81 VDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARV 144 (250)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhcc
Confidence 89999999864332222 2346779999999999888764 3443 899999987765
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-15 Score=129.81 Aligned_cols=121 Identities=15% Similarity=0.109 Sum_probs=90.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------ccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~~ 179 (263)
.+++|+++||||+|+||.+++++|++.|++|+++++... .+...... ...++..+.+|+.+. .+.
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFG 84 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 367899999999999999999999999999998876432 11111111 134677889999875 224
Q ss_pred CCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~vyg 235 (263)
.+|++|||||....... .+++++.+++|+.|+.++++++.. .+ .+||++||...+.
T Consensus 85 ~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~ 150 (253)
T PRK08993 85 HIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQ 150 (253)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhcc
Confidence 69999999997543322 235788899999999999888643 22 3899999987765
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-15 Score=130.82 Aligned_cols=118 Identities=15% Similarity=0.159 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~ 179 (263)
+++|+++||||+||||++++++|+++|++|++++|+.....+.+...+ ...++..+.+|++++. +.
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999999999886543322222211 1345788899998762 13
Q ss_pred CCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
++|+||||||.... ...++...+++|+.|+.++++.+.+. +.+||++||...
T Consensus 84 ~~d~vi~~ag~~~~--~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~ 138 (248)
T PRK07806 84 GLDALVLNASGGME--SGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQA 138 (248)
T ss_pred CCcEEEECCCCCCC--CCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchh
Confidence 69999999985322 23346677899999999999999764 238999999643
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=134.65 Aligned_cols=123 Identities=20% Similarity=0.158 Sum_probs=97.9
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEcccccc-----------
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEP----------- 176 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~----------- 176 (263)
.....+++++||||+++||.+++++|+.+|.+|++.+|+.+...+....+. ....+.++.+|+.+.
T Consensus 30 ~~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~ 109 (314)
T KOG1208|consen 30 GIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFK 109 (314)
T ss_pred cccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHH
Confidence 345677899999999999999999999999999999998755554444443 366788899999876
Q ss_pred -ccCCCcEEEEccCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcce
Q 024766 177 -ILLEVDQIYHLACPASPVH--YKYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEV 233 (263)
Q Consensus 177 -~~~~iD~Vi~~Ag~~~~~~--~~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~v 233 (263)
....+|++|||||+..+.. ..+..+..|++|+.|++.|.+++ +... .|||++||...
T Consensus 110 ~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~ 174 (314)
T KOG1208|consen 110 KKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILG 174 (314)
T ss_pred hcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccc
Confidence 2345999999999877654 34568999999999988877765 4444 59999999765
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=130.18 Aligned_cols=123 Identities=9% Similarity=0.044 Sum_probs=93.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEcccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEP------------I 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~------------~ 177 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++..+.+|+.++ .
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDH 85 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999987554333222221 245788889999875 2
Q ss_pred cCCCcEEEEccCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
+..+|+||||||...... ..+++++.+.+|+.|+.++++++. +.+ .+||++||.+.+.
T Consensus 86 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~ 152 (257)
T PRK09242 86 WDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLT 152 (257)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCC
Confidence 356999999999643222 223567889999999999988874 333 4899999987665
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-15 Score=129.93 Aligned_cols=123 Identities=15% Similarity=0.093 Sum_probs=91.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~------------ 177 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|+.++..+...+.. ...++..+.+|++|..
T Consensus 5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999997655433322221 2346778899998762
Q ss_pred cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
+..+|+||||||......+. +++.+.+++|+.+..++++.+. +.+ .+||++||...+.
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 151 (265)
T PRK07062 85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQ 151 (265)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccC
Confidence 34689999999975433322 2467788999999888777653 333 3999999976553
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.1e-15 Score=129.13 Aligned_cols=122 Identities=19% Similarity=0.112 Sum_probs=88.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ....+..+.+|+.+.. +.
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3567899999999999999999999999999999987554333322221 1345778889997652 24
Q ss_pred CCcEEEEccCCCCC-CC----CCCCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCccee
Q 024766 180 EVDQIYHLACPASP-VH----YKYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~-~~----~~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vy 234 (263)
.+|+||||||.... .. ..++++..+++|+.++.++++++ ++.+ .+||++||...+
T Consensus 85 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~ 149 (252)
T PRK07035 85 RLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGV 149 (252)
T ss_pred CCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhc
Confidence 58999999985321 11 12235678999999999888776 3333 389999986443
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.6e-15 Score=127.43 Aligned_cols=121 Identities=15% Similarity=0.050 Sum_probs=87.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEE-ecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-DNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l-~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
+.+++++||||+|+||++++++|+++|++|+++ .|+.+...+...+.. ...++.++.+|++++. +.
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFG 81 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 356899999999999999999999999998774 554433222222211 2456888999998862 23
Q ss_pred CCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vy 234 (263)
.+|+||||||........+ .+...+++|+.++.++++++.+ .+. +||++||...+
T Consensus 82 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~ 145 (250)
T PRK08063 82 RLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSI 145 (250)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhc
Confidence 5899999998654333322 2455689999999999888754 333 89999997554
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=143.96 Aligned_cols=123 Identities=15% Similarity=0.077 Sum_probs=94.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
...+++++||||+|+||++++++|+++|++|++++|+.++..+....+. ...++.++.+|++|+. ..
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 391 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHG 391 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 4567899999999999999999999999999999997655443333221 2346889999998862 23
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vyg 235 (263)
.+|+||||||......+. ++++..+++|+.|+.++++++. +.+ .+||++||.+.|.
T Consensus 392 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~ 457 (582)
T PRK05855 392 VPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYA 457 (582)
T ss_pred CCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc
Confidence 599999999986543322 2467788999999999888753 333 4899999998876
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.5e-15 Score=146.70 Aligned_cols=140 Identities=19% Similarity=0.209 Sum_probs=99.8
Q ss_pred cchhhhhhccccccccccccCcccCCCCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc
Q 024766 82 HALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF 161 (263)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~ 161 (263)
.||.+|+.+. .+++....+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+..
T Consensus 394 eyw~~e~~kl--------------~~~~~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~ 459 (676)
T TIGR02632 394 EYWPLEEAKL--------------RRMPKEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEIN 459 (676)
T ss_pred hhhhhhHHhh--------------ccCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHH
Confidence 5777777652 23444456789999999999999999999999999999999987554333222221
Q ss_pred ---CCCceEEEEccccccc------------cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----
Q 024766 162 ---RNPRFELIRHDVVEPI------------LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA---- 218 (263)
Q Consensus 162 ---~~~~v~~~~~Dv~~~~------------~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a---- 218 (263)
....+..+.+|+++.. +.++|+||||||........ ++++..+++|+.|..++++.+
T Consensus 460 ~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m 539 (676)
T TIGR02632 460 GQFGAGRAVALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQM 539 (676)
T ss_pred hhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345778899998762 24699999999975433332 235677899999988876554
Q ss_pred HHcC--CeEEEEcCcc-eec
Q 024766 219 KRVG--AKFLLTSTSE-VYG 235 (263)
Q Consensus 219 ~~~~--~~iV~vSS~~-vyg 235 (263)
++.+ .+||++||.. +++
T Consensus 540 ~~~~~~g~IV~iSS~~a~~~ 559 (676)
T TIGR02632 540 REQGLGGNIVFIASKNAVYA 559 (676)
T ss_pred HhcCCCCEEEEEeChhhcCC
Confidence 3333 4899999964 444
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6e-15 Score=128.34 Aligned_cols=120 Identities=15% Similarity=0.094 Sum_probs=90.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ...++..+.+|+.+.. +..
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 86 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP 86 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 568899999999999999999999999999999987654443333322 1346778889998762 245
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcce
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEV 233 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~v 233 (263)
+|+||||||....... .+++++.+++|+.|+.++++.+.+ .+ .+||++||...
T Consensus 87 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~ 148 (254)
T PRK08085 87 IDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQS 148 (254)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchh
Confidence 8999999997543222 234677899999999998887653 23 48999999743
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-15 Score=130.85 Aligned_cols=119 Identities=20% Similarity=0.198 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~i 181 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.+...+ +... ...++..+.+|+.+. .+..+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~-l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQE-LEAA-HGDAVVGVEGDVRSLDDHKEAVARCVAAFGKI 80 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHhh-cCCceEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 467899999999999999999999999999999987543332 2221 234577888999775 12468
Q ss_pred cEEEEccCCCCCC-CC---C-----CCHHHHHHHHHHHHHHHHHHHHHc----CCeEEEEcCccee
Q 024766 182 DQIYHLACPASPV-HY---K-----YNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVY 234 (263)
Q Consensus 182 D~Vi~~Ag~~~~~-~~---~-----~~~~~~~~~Nv~gt~~ll~~a~~~----~~~iV~vSS~~vy 234 (263)
|++|||||..... .. . +++++.+++|+.|+.++++++.+. +.++|++||...+
T Consensus 81 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~ 146 (262)
T TIGR03325 81 DCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGF 146 (262)
T ss_pred CEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEecccee
Confidence 9999999964211 11 1 246788999999999999987542 2378888886543
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-15 Score=128.01 Aligned_cols=122 Identities=11% Similarity=0.030 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC-Cccchhhhhhhc-CCCceEEEEccccccc--------------
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF-FTGRKDNLVHHF-RNPRFELIRHDVVEPI-------------- 177 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~-~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~-------------- 177 (263)
+++|+++||||+|+||.+++++|++.|++|++.+++ .+...+...+.. ....+..+.+|+.+..
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQ 81 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhh
Confidence 457899999999999999999999999999887543 332222222221 2345667788886641
Q ss_pred --c--CCCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 178 --L--LEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 178 --~--~~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
. ..+|+||||||........+ .+++++++|+.|+.++++++.+. ..+||++||.+.+.
T Consensus 82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~ 150 (252)
T PRK12747 82 NRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI 150 (252)
T ss_pred hhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCccccc
Confidence 1 26999999999753322222 35778899999999999887543 23999999987654
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-15 Score=131.97 Aligned_cols=120 Identities=17% Similarity=0.096 Sum_probs=88.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC---------ccchhhhhhhc-CCCceEEEEcccccc-------
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF---------TGRKDNLVHHF-RNPRFELIRHDVVEP------- 176 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~---------~~~~~~~~~~~-~~~~v~~~~~Dv~~~------- 176 (263)
+++|+++||||+++||.+++++|+++|++|++++++. +...+...++. ...++..+.+|+++.
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV 83 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence 5688999999999999999999999999999988764 22222222221 234677889999875
Q ss_pred -----ccCCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----c---C----CeEEEEcCcce
Q 024766 177 -----ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----V---G----AKFLLTSTSEV 233 (263)
Q Consensus 177 -----~~~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~---~----~~iV~vSS~~v 233 (263)
.+..+|++|||||+...... .+++++.+++|+.|+.++++++.. . + .+||++||.+.
T Consensus 84 ~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~ 160 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAG 160 (286)
T ss_pred HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhh
Confidence 23569999999997543322 234678899999999998887632 1 1 38999999654
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.9e-15 Score=133.11 Aligned_cols=123 Identities=16% Similarity=0.023 Sum_probs=91.3
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhh-hhhc-CCCceEEEEcccccc-----------cc
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL-VHHF-RNPRFELIRHDVVEP-----------IL 178 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~-~~~~-~~~~v~~~~~Dv~~~-----------~~ 178 (263)
..+++|+++||||+|+||.+++++|+++|++|+++++......+.. .++. ...++..+.+|+.+. .+
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~ 87 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGL 87 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999999999987543322222 2221 245688899999875 13
Q ss_pred CCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----c--------CCeEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----V--------GAKFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~--------~~~iV~vSS~~vy 234 (263)
..+|+||||||......+ .++++..+++|+.|+.++++++.. . ..+||++||.+.+
T Consensus 88 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 159 (306)
T PRK07792 88 GGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGL 159 (306)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccc
Confidence 469999999997554322 234677899999999999987632 1 1389999997654
|
|
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.4e-15 Score=129.00 Aligned_cols=115 Identities=19% Similarity=0.193 Sum_probs=88.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||.+++++|+++|++|++++++..... ..++..+.+|++++. +..
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 77 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ--------HENYQFVPTDVSSAEEVNHTVAEIIEKFGR 77 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc--------cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467889999999999999999999999999999988654321 236778899998762 246
Q ss_pred CcEEEEccCCCCCCC-------------CCCCHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVH-------------YKYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~-------------~~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~~iV~vSS~~vyg 235 (263)
+|+||||||...... ..+++++.+++|+.|+.++++++... + .+||++||...+.
T Consensus 78 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 150 (266)
T PRK06171 78 IDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLE 150 (266)
T ss_pred CCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccC
Confidence 899999999643211 12245778999999999999887542 2 3899999976553
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.6e-15 Score=130.57 Aligned_cols=123 Identities=19% Similarity=0.179 Sum_probs=93.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|+.....+.....+ ...++.++.+|+.+.. .
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999887543322222222 2346788999998752 2
Q ss_pred CCCcEEEEccCCCCCC-CC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPV-HY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~-~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
.++|+||||||..... .. .+++.+.+++|+.|+.++++++.+. +.+||++||.+.|.
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~ 187 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYE 187 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccC
Confidence 3689999999964332 11 1245778999999999999998653 34899999988775
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-15 Score=131.76 Aligned_cols=123 Identities=18% Similarity=0.238 Sum_probs=88.8
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCCCC-CC
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVH-YK 197 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~~-~~ 197 (263)
|+||||+||||++++++|+++|++|++++|+......... ..+..+..+...+.+.++|+|||+||...... +.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~D~Vvh~a~~~~~~~~~~ 75 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKW-----EGYKPWAPLAESEALEGADAVINLAGEPIADKRWT 75 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccc-----eeeecccccchhhhcCCCCEEEECCCCCcccccCC
Confidence 6899999999999999999999999999997654322110 11111112223345678999999998643211 11
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHcCC---eEEEEcCcceecCCCCCCcCCCC
Q 024766 198 -YNPVKTIKTNVMGTLNMLGLAKRVGA---KFLLTSTSEVYGDPLEHPQKETY 246 (263)
Q Consensus 198 -~~~~~~~~~Nv~gt~~ll~~a~~~~~---~iV~vSS~~vyg~~~~~~~~E~~ 246 (263)
..+...+++|+.++.++++++++.+. .+|+.||.++||.....+++|+.
T Consensus 76 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~ 128 (292)
T TIGR01777 76 EERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEED 128 (292)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCccc
Confidence 23567789999999999999999874 45556667889977667888885
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.5e-15 Score=127.99 Aligned_cols=118 Identities=17% Similarity=0.200 Sum_probs=85.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC-
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE- 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~- 180 (263)
+++|+++||||+|+||+++++.|+++|++|+++.++.....+.+.... ..++.++.+|+.++. +..
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~ 81 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADEL-GDRAIALQADVTDREQVQAMFATATEHFGKP 81 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHh-CCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 467899999999999999999999999999887664333322232222 246788899997752 123
Q ss_pred CcEEEEccCCCCC------CCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcc
Q 024766 181 VDQIYHLACPASP------VHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSE 232 (263)
Q Consensus 181 iD~Vi~~Ag~~~~------~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~ 232 (263)
+|+||||||.... ... .+++.+.+++|+.|+.++++++.. .+ .+||++||..
T Consensus 82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~ 148 (253)
T PRK08642 82 ITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNL 148 (253)
T ss_pred CeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence 9999999986321 111 123567799999999999998752 33 3899999864
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.5e-15 Score=128.08 Aligned_cols=122 Identities=17% Similarity=0.130 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.+..+.....+. ...++.++.+|++|+. ...
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH 89 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 567899999999999999999999999999999987544332222221 2346788999998752 236
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc-----CC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV-----GA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~-----~~-~iV~vSS~~vyg 235 (263)
+|+||||||........ +.+++.+++|+.++.++++++.+. +. +||++||.+.+.
T Consensus 90 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~ 154 (259)
T PRK08213 90 VDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLG 154 (259)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhcc
Confidence 89999999864332222 235677899999999999987543 33 899999976543
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.7e-15 Score=127.86 Aligned_cols=119 Identities=20% Similarity=0.178 Sum_probs=89.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+. .+... ......+..+.+|+++.. +..
T Consensus 12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~-~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 89 (255)
T PRK06841 12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDV-AEVAA-QLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGR 89 (255)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHH-HhhCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 3578899999999999999999999999999999986542 22122 223445678899998762 246
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcce
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEV 233 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~v 233 (263)
+|+||||||........ +++++.+++|+.|+.++++++.. .+ .+||++||...
T Consensus 90 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~ 151 (255)
T PRK06841 90 IDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAG 151 (255)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhh
Confidence 89999999975433222 24567899999999999998754 23 48999999653
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.9e-15 Score=127.29 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=90.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc------------cCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+|+++||||+|+||++++++|+++|++|++++|+.+...+...... ...++.++.+|++++. +..
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5799999999999999999999999999999987654433222211 2457888999998762 346
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcce-ec
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEV-YG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~v-yg 235 (263)
+|+||||||+...... .+.+++.+++|+.|+.++++++. +.+. +||++||... +|
T Consensus 82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~ 146 (248)
T PRK08251 82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRG 146 (248)
T ss_pred CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccC
Confidence 9999999997544332 22356778999999999888763 3343 8999999644 44
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.8e-15 Score=131.98 Aligned_cols=121 Identities=14% Similarity=0.109 Sum_probs=89.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
++|+++||||+++||.+++++|+++| ++|++++|+.++..+...+.. ....+..+.+|+++.. ...
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 81 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP 81 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 46799999999999999999999999 999999987654433222221 2346778889997751 246
Q ss_pred CcEEEEccCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHH----HHcC---CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLA----KRVG---AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a----~~~~---~~iV~vSS~~vyg 235 (263)
+|++|||||+..... ..+.++..+++|+.|+..+++++ ++.+ .+||++||...+.
T Consensus 82 iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~ 148 (314)
T TIGR01289 82 LDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNT 148 (314)
T ss_pred CCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCcccc
Confidence 999999999743211 12346778999999998887765 3332 4999999987764
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.6e-15 Score=125.72 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=85.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------cCCCcEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEVDQIY 185 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~--------~~~iD~Vi 185 (263)
+++|+++||||+|+||++++++|+++|++|+++.++.....+.+... ..+..+.+|+.+.. ...+|+||
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~li 80 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQE---TGATAVQTDSADRDAVIDVVRKSGALDILV 80 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHH---hCCeEEecCCCCHHHHHHHHHHhCCCcEEE
Confidence 56789999999999999999999999999988766433222222221 13567778887652 24589999
Q ss_pred EccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 186 HLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 186 ~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
||||....... .+++++.+++|+.|+.+++..+.+. +.+||++||...
T Consensus 81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~ 135 (237)
T PRK12742 81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNG 135 (237)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 99997543221 2346788999999999998766543 248999999653
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=127.45 Aligned_cols=122 Identities=14% Similarity=0.082 Sum_probs=88.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||.+++++|+++|++|+++.|+.....+...+.+ ...++..+.+|+++.. +
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~ 83 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEF 83 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 3678999999999999999999999999999988875433322222211 2346778899998762 2
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHH----HHHcC--CeEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGL----AKRVG--AKFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~----a~~~~--~~iV~vSS~~vy 234 (263)
..+|+||||||........ +.+++.+++|+.++.++++. +++.+ .+||++||...+
T Consensus 84 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~ 149 (261)
T PRK08936 84 GTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQ 149 (261)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccc
Confidence 4589999999975443322 34667899999998776554 34443 389999996433
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.9e-15 Score=126.11 Aligned_cols=121 Identities=23% Similarity=0.198 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~ 179 (263)
+++|+++||||+|+||++++++|+++|++|+++.++.....+...+.+ ...++.++.+|+.++. +.
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 567899999999999999999999999999888776443322222221 2456888999998752 24
Q ss_pred CCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vy 234 (263)
++|+||||||....... .+++++++++|+.|+.++++.+.+. +.+||++||.+.+
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~ 144 (245)
T PRK12937 83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIA 144 (245)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeecccc
Confidence 69999999997543222 2246678899999999999887653 2389999987554
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.5e-15 Score=140.52 Aligned_cols=120 Identities=16% Similarity=0.168 Sum_probs=94.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-------C---CCceEEEEcccccc-----c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-------R---NPRFELIRHDVVEP-----I 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-------~---~~~v~~~~~Dv~~~-----~ 177 (263)
..++|+|+||||+|+||++++++|+++|++|++++|+.+.......+.. + ..++.++.+|+.+. .
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 4578899999999999999999999999999999997665433222110 1 13578899999875 3
Q ss_pred cCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCccee
Q 024766 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vy 234 (263)
+.++|+||||+|.... ...++...+++|+.|+.++++++++.+. +||++||.+++
T Consensus 157 LggiDiVVn~AG~~~~--~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~ 212 (576)
T PLN03209 157 LGNASVVICCIGASEK--EVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTN 212 (576)
T ss_pred hcCCCEEEEccccccc--cccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhc
Confidence 5789999999986432 1124567789999999999999998886 99999998763
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.1e-15 Score=127.89 Aligned_cols=121 Identities=14% Similarity=0.183 Sum_probs=90.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|+ ... +.+.+.+ ...++.++.+|+.+.. +
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~ 89 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNW-DETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEF 89 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHH-HHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3678999999999999999999999999999999886 222 2222221 2356888999998762 2
Q ss_pred CCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
..+|++|||||....... .+++++.+++|+.++.++++++. +.+ .+||++||...+.
T Consensus 90 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 155 (258)
T PRK06935 90 GKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQ 155 (258)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhcc
Confidence 368999999997543222 22467889999999888887764 333 3899999987654
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-15 Score=128.40 Aligned_cols=120 Identities=15% Similarity=0.087 Sum_probs=90.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.+..++...+.. ...++..+.+|+.++. +..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 578999999999999999999999999999999987654433322221 2346778899998762 347
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCcce
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEV 233 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~v 233 (263)
+|+||||||........ +.+++.+++|+.|+.++++++. +.+ .+||++||...
T Consensus 87 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~ 149 (253)
T PRK05867 87 IDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSG 149 (253)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHh
Confidence 99999999975433322 2456778999999999988864 222 37999988653
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.2e-15 Score=127.63 Aligned_cols=121 Identities=12% Similarity=0.031 Sum_probs=90.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
++|+++||||+|+||..++++|+++|++|++++|+.+...+...... ...++.++.+|+++.. +..+
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 84 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP 84 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999999999999987654333222211 2356888999998762 2459
Q ss_pred cEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vyg 235 (263)
|+||||||....... .++++..+++|+.++.++++.+ ++.+ .+||++||...++
T Consensus 85 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 147 (241)
T PRK07454 85 DVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARN 147 (241)
T ss_pred CEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCc
Confidence 999999996543222 1246777899999999988775 3333 4899999987775
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=128.55 Aligned_cols=122 Identities=11% Similarity=0.049 Sum_probs=90.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
..+|+++||||+|+||++++++|+++|++|++++|+.+...+...... ...++.++.+|+++.. +..
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGE 87 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 556799999999999999999999999999999886543332222111 1346788899998762 246
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
+|+||||||........ +++++.+++|+.|+.++++.+.+ .+ .+||++||...|.
T Consensus 88 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~ 151 (274)
T PRK07775 88 IEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALR 151 (274)
T ss_pred CCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcC
Confidence 89999999975433322 23566789999999999888642 33 3899999987765
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.8e-15 Score=129.35 Aligned_cols=118 Identities=18% Similarity=0.122 Sum_probs=88.6
Q ss_pred CCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccC
Q 024766 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILL 179 (263)
Q Consensus 114 ~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~ 179 (263)
+++|+++||||+ ++||++++++|+++|++|++++|+ +...+...+. ....+..+.+|++++ .+.
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~-~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 82 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN-DRMKKSLQKL-VDEEDLLVECDVASDESIERAFATIKERVG 82 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc-hHHHHHHHhh-ccCceeEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 578999999999 799999999999999999999886 2223333332 234677899999876 235
Q ss_pred CCcEEEEccCCCCC----CCC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 180 EVDQIYHLACPASP----VHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~----~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
.+|++|||||.... ... .++++..+++|+.|+..+++.+... +.+||++||.+.
T Consensus 83 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~ 147 (252)
T PRK06079 83 KIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGS 147 (252)
T ss_pred CCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCc
Confidence 69999999997532 111 1246778999999999998887543 248999998654
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=126.71 Aligned_cols=123 Identities=13% Similarity=0.088 Sum_probs=92.1
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------c
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~ 178 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|+.++. +
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 34688999999999999999999999999999999997654333222221 2346889999998762 2
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vy 234 (263)
..+|+||||||........ +++++.+.+|+.|+.++++.+.+ .+. +||++||...+
T Consensus 87 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~ 151 (256)
T PRK06124 87 GRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQ 151 (256)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhc
Confidence 4589999999975433222 24667899999999999977643 343 89999997543
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7e-15 Score=129.44 Aligned_cols=122 Identities=19% Similarity=0.159 Sum_probs=90.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc------------c
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~------------~ 178 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ...++.++.+|+.++. +
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 567899999999999999999999999999999987554333322221 1246788899998762 2
Q ss_pred CCCcEEEEccCCCCCC-C----CCCCHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPV-H----YKYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~~iV~vSS~~vyg 235 (263)
..+|+||||||..... . ..+++...+++|+.++.++++++.+. + .+||++||.+.+.
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~ 151 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASN 151 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcC
Confidence 3689999999864321 1 12235678899999999998876432 2 3899999987654
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=8e-15 Score=127.48 Aligned_cols=123 Identities=12% Similarity=0.090 Sum_probs=91.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|+.+.. +.
T Consensus 6 ~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (258)
T PRK06949 6 NLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAG 85 (258)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 3678999999999999999999999999999999987654333222221 2346788899997651 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----c---------CCeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----V---------GAKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~---------~~~iV~vSS~~vyg 235 (263)
.+|+||||||........ ++++.++++|+.|+.++++.+.. . +.++|++||...+.
T Consensus 86 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~ 158 (258)
T PRK06949 86 TIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLR 158 (258)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccC
Confidence 689999999975433222 34677899999999999887642 1 23899999986653
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.4e-15 Score=128.42 Aligned_cols=119 Identities=19% Similarity=0.093 Sum_probs=89.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCCCcE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEVDQ 183 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~iD~ 183 (263)
|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|+.+.. ...+|+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~ 80 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV 80 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence 479999999999999999999999999999987655443333222 2456788999998752 246999
Q ss_pred EEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 184 IYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
||||||........+ ++++.+++|+.++.++++.+ ++.+. +||++||...+.
T Consensus 81 lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~ 141 (270)
T PRK05650 81 IVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLM 141 (270)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcC
Confidence 999999765433332 35667899999988877764 45554 999999986654
|
|
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.7e-15 Score=125.91 Aligned_cols=133 Identities=15% Similarity=0.158 Sum_probs=94.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc------------cC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~------------~~ 179 (263)
++++++||||+|+||++++++|+++|++|++++|+.....+.....+ ....+.++.+|+++.. +.
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG 84 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45799999999999999999999999999999986443333222211 2345788899998752 23
Q ss_pred CCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc----CCeEEEEcCcceecCCCCCCcCCCCCCCCC
Q 024766 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYGDPLEHPQKETYWGNVN 251 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~ 251 (263)
.+|+||||||......+ .++++.++++|+.|+.++++++.+. +..++++++... . .
T Consensus 85 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~-----~ 148 (249)
T PRK09135 85 RLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHA-----------E-----R 148 (249)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhh-----------c-----C
Confidence 58999999996543222 2246778999999999999998542 235666655321 1 2
Q ss_pred CCCcCccccccC
Q 024766 252 PIGELLAATAVV 263 (263)
Q Consensus 252 p~~~~~~Y~~sK 263 (263)
|..+...|+.||
T Consensus 149 ~~~~~~~Y~~sK 160 (249)
T PRK09135 149 PLKGYPVYCAAK 160 (249)
T ss_pred CCCCchhHHHHH
Confidence 455666788776
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=127.02 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=86.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCcc-chhhhhhhc--CCCceEEEEccccccc-----------cC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTG-RKDNLVHHF--RNPRFELIRHDVVEPI-----------LL 179 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~-~~~~~~~~~--~~~~v~~~~~Dv~~~~-----------~~ 179 (263)
++++++||||+|+||++++++|+++| ++|++++|+.+. ..+...+.. ...++.++.+|+.|.. ..
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~g 86 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAGG 86 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhcC
Confidence 56799999999999999999999995 899999998765 333322221 2336888999997752 13
Q ss_pred CCcEEEEccCCCCCCC-CCCCH---HHHHHHHHHHHHHH----HHHHHHcCC-eEEEEcCcce
Q 024766 180 EVDQIYHLACPASPVH-YKYNP---VKTIKTNVMGTLNM----LGLAKRVGA-KFLLTSTSEV 233 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~-~~~~~---~~~~~~Nv~gt~~l----l~~a~~~~~-~iV~vSS~~v 233 (263)
++|++|||+|...... ...+. .+.+++|+.|+.++ ++.+++.+. +||++||...
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g 149 (253)
T PRK07904 87 DVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAG 149 (253)
T ss_pred CCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhh
Confidence 6999999998754321 11122 35689999998875 445555554 9999999754
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=124.63 Aligned_cols=121 Identities=15% Similarity=0.051 Sum_probs=90.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++++++||||+|+||.+++++|+++|++|++++|+.....+...+.. ...++.++.+|+.+.. +..
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 456899999999999999999999999999999987654333222221 2346888899997762 246
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vy 234 (263)
+|+||||||........ +++++.+++|+.|+.++++.+.. .+ .++|++||...+
T Consensus 85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~ 147 (239)
T PRK07666 85 IDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQ 147 (239)
T ss_pred ccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhc
Confidence 99999999975433221 23567789999999999888753 33 389999996544
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=127.36 Aligned_cols=119 Identities=11% Similarity=0.102 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----------cCCCc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----------LLEVD 182 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----------~~~iD 182 (263)
+++++++||||+|+||.+++++|+++|++|++++|+.+...+...+.....++.++.+|+.|.. +..+|
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id 82 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGIN 82 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence 4578999999999999999999999999999999875544333222222457888999998862 24689
Q ss_pred EEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcc
Q 024766 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSE 232 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~ 232 (263)
+||||||........ +.+.+.+++|+.|+.++++.+.+ .+ .+||++||..
T Consensus 83 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~ 141 (263)
T PRK09072 83 VLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTF 141 (263)
T ss_pred EEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChh
Confidence 999999975433222 23567789999999999988753 22 3899998854
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=126.94 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=87.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+|+++||||+|+||.+++++|+++|++|+++.++.....+...... ...++.++.+|+.+.. +..+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI 81 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5799999999999999999999999999988765443332222221 2457889999998752 2468
Q ss_pred cEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCcc
Q 024766 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSE 232 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~ 232 (263)
|+||||||....... .+++++.+.+|+.|+.++++++.. .+ .+||++||..
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~ 142 (256)
T PRK12743 82 DVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVH 142 (256)
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecc
Confidence 999999997543222 234678899999999999987643 22 4899999964
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=128.29 Aligned_cols=119 Identities=12% Similarity=0.016 Sum_probs=88.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchh------hh-hhhc-CCCceEEEEccccccc--------
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD------NL-VHHF-RNPRFELIRHDVVEPI-------- 177 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~------~~-~~~~-~~~~v~~~~~Dv~~~~-------- 177 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+ .. .+.. ...++..+.+|+++..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~ 83 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence 467899999999999999999999999999999987543211 11 1111 2346788899998762
Q ss_pred ----cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----c-CCeEEEEcCcc
Q 024766 178 ----LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----V-GAKFLLTSTSE 232 (263)
Q Consensus 178 ----~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~-~~~iV~vSS~~ 232 (263)
+.++|+||||||........ +++++.+++|+.|+.++++++.. . +.+||++||..
T Consensus 84 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~ 151 (273)
T PRK08278 84 AVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPL 151 (273)
T ss_pred HHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCch
Confidence 23699999999975443332 23577889999999999998853 2 24899998853
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=127.62 Aligned_cols=122 Identities=17% Similarity=0.178 Sum_probs=89.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ...++.++.+|++++. +.
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3578899999999999999999999999999999987554332222221 1345678889998752 24
Q ss_pred CCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vy 234 (263)
.+|+||||||....... .+++++.+++|+.|+.++++++.+ .+.+||++||...+
T Consensus 86 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~ 148 (264)
T PRK07576 86 PIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAF 148 (264)
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhc
Confidence 58999999985432222 224567789999999999988753 33499999997554
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=126.17 Aligned_cols=119 Identities=15% Similarity=0.121 Sum_probs=88.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.. ..+...+.. ...++.++.+|+.+.. +..
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~ 82 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGR 82 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56789999999999999999999999999999998753 222222221 2346788899998752 246
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcce
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEV 233 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~v 233 (263)
+|+||||||........+ .+++.+++|+.|+.++++.+.+ .+ .+||++||...
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 144 (263)
T PRK08226 83 IDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTG 144 (263)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHh
Confidence 899999999754433322 3456789999999999988643 23 38999999643
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=125.64 Aligned_cols=120 Identities=16% Similarity=0.083 Sum_probs=88.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEVD 182 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~iD 182 (263)
+|+++||||+|+||++++++|+++|++|++++|+.+...+...... ...++..+.+|+.+.. +..+|
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d 80 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD 80 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4689999999999999999999999999999997544332222211 2346888999998763 34589
Q ss_pred EEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
+||||||........ +++++.+++|+.|+.++++.+ ++.+. ++|++||...+.
T Consensus 81 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~ 142 (255)
T TIGR01963 81 ILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLV 142 (255)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcC
Confidence 999999875443221 234677889999988888876 44444 899999976554
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.5e-14 Score=126.75 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=91.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|+.++..+...... ...++..+.+|++++. +.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 3577899999999999999999999999999999887654433332221 2346888999998762 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCc-ceec
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTS-EVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~-~vyg 235 (263)
.+|+||||||........ +++++.+++|+.|+..+++.+.. .+ .+||++||. +.++
T Consensus 87 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~ 152 (265)
T PRK07097 87 VIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELG 152 (265)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCC
Confidence 589999999975543322 24677789999999988887643 33 489999995 4444
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.9e-15 Score=127.36 Aligned_cols=103 Identities=19% Similarity=0.227 Sum_probs=77.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~ 187 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+. ..... ...+.+|+++. .+.++|++|||
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~---~~~~~-~~~~~~D~~~~~~~~~~~~~iDilVnn 86 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSES---NDESP-NEWIKWECGKEESLDKQLASLDVLILN 86 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhh---hccCC-CeEEEeeCCCHHHHHHhcCCCCEEEEC
Confidence 45778999999999999999999999999999999875222111 11111 24667888765 35679999999
Q ss_pred cCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHH
Q 024766 188 ACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAK 219 (263)
Q Consensus 188 Ag~~~~~~~-~~~~~~~~~~Nv~gt~~ll~~a~ 219 (263)
||....... .+++++.+++|+.|+.++++++.
T Consensus 87 AG~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 119 (245)
T PRK12367 87 HGINPGGRQDPENINKALEINALSSWRLLELFE 119 (245)
T ss_pred CccCCcCCCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence 997433222 34578889999999999999864
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=125.24 Aligned_cols=121 Identities=14% Similarity=0.134 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++++++||||+|+||++++++|+++|+.|++.+|+.+...+..... ..++.++.+|+.+.. +..+
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL--GERVKIFPANLSDRDEVKALGQKAEADLEGV 81 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46789999999999999999999999999888877654433322221 346788889998752 3469
Q ss_pred cEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCc-ceecC
Q 024766 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTS-EVYGD 236 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~-~vyg~ 236 (263)
|+||||||....... .+++++.+++|+.++.++++++.+ .+ .+||++||. +.++.
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~ 146 (245)
T PRK12936 82 DILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGN 146 (245)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCC
Confidence 999999997543221 234677899999999999887642 23 489999996 45553
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=126.40 Aligned_cols=116 Identities=16% Similarity=0.138 Sum_probs=85.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCcEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQI 184 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD~V 184 (263)
|+++||||+|+||.+++++|+++|++|++++|+.+...+.. ... ..++.++.+|+.+.. +.++|+|
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~-~~~-~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~v 78 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK-DEL-GDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVL 78 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HHh-ccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 47999999999999999999999999999998755433222 211 346788899997752 2369999
Q ss_pred EEccCCCCCC-C----CCCCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCccee
Q 024766 185 YHLACPASPV-H----YKYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 185 i~~Ag~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vy 234 (263)
|||||..... . ..+++++++++|+.|+.++++.+ ++.+. +||++||.+.+
T Consensus 79 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~ 138 (248)
T PRK10538 79 VNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGS 138 (248)
T ss_pred EECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccC
Confidence 9999864321 1 22346778999999987777765 34443 89999997544
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=125.53 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=88.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEVD 182 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~iD 182 (263)
+|+++||||+|+||.+++++|+++|++|++++|+.....+...... ...++.++.+|++++. +..+|
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID 80 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence 5799999999999999999999999999999987554333222221 1356888999998762 24689
Q ss_pred EEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCccee
Q 024766 183 QIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVY 234 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~vy 234 (263)
+||||||....... .+++++.+++|+.|+.++++++.+ .+ .+||++||...+
T Consensus 81 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~ 142 (252)
T PRK07677 81 ALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAW 142 (252)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhc
Confidence 99999986432222 223677899999999999998742 22 389999987544
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=125.16 Aligned_cols=116 Identities=20% Similarity=0.208 Sum_probs=88.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------cCCCcEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEVDQI 184 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~--------~~~iD~V 184 (263)
+++++++||||+|+||++++++|+++|+ +|++++|+.++..+ ...++.++.+|+.+.. ...+|+|
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD------LGPRVVPLQLDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh------cCCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 4678999999999999999999999999 99999987554322 2346788899998752 2358999
Q ss_pred EEccCCC-CCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 185 YHLACPA-SPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 185 i~~Ag~~-~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
||+||.. ..... .+++...+++|+.++.++++++. +.+. +||++||...+.
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~ 138 (238)
T PRK08264 78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWV 138 (238)
T ss_pred EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcc
Confidence 9999973 22222 23456778999999999999864 3333 899999977664
|
|
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=124.93 Aligned_cols=122 Identities=15% Similarity=0.083 Sum_probs=90.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+.+++++||||+|+||++++++|+++|++|++++|+.....+..........+..+.+|+.+.. +..+
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGL 83 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 3468999999999999999999999999999999876543333222222256888999987652 2369
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vyg 235 (263)
|+|||+||........ +++++.+++|+.|+.++++++.+ .+.+||++||...+.
T Consensus 84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~ 145 (237)
T PRK07326 84 DVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTN 145 (237)
T ss_pred CEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhcc
Confidence 9999999875433222 23567799999999999888753 223899999976543
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=125.97 Aligned_cols=114 Identities=13% Similarity=0.112 Sum_probs=85.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc---------CCCcEEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL---------LEVDQIYH 186 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~---------~~iD~Vi~ 186 (263)
+++++||||+|+||.+++++|+++|++|++++|+.+..++. .. ...++.++.+|+++... ..+|.+||
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~-~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~ 77 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDEL-HT--QSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF 77 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-HH--hcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence 46899999999999999999999999999999875433222 11 12457788999987621 23799999
Q ss_pred ccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcc
Q 024766 187 LACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSE 232 (263)
Q Consensus 187 ~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~ 232 (263)
|||....... .+++++++++|+.|+.++++++... +.++|++||..
T Consensus 78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~ 130 (240)
T PRK06101 78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIA 130 (240)
T ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechh
Confidence 9985432221 1235678999999999999998753 45899998853
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-14 Score=125.16 Aligned_cols=117 Identities=10% Similarity=0.062 Sum_probs=87.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccccc---------CCCcEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPIL---------LEVDQI 184 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~~---------~~iD~V 184 (263)
||+++||||+|+||.+++++|+++|++|++++|+.++..+...+.. ...++.++.+|+.+... ..+|++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v 80 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV 80 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence 4789999999999999999999999999999998655433332221 24578899999987621 247999
Q ss_pred EEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcc
Q 024766 185 YHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSE 232 (263)
Q Consensus 185 i~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~ 232 (263)
|||||........ +++.+.+++|+.|+.++++++.. .+ .+||++||..
T Consensus 81 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~ 137 (243)
T PRK07102 81 LIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVA 137 (243)
T ss_pred EECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEeccc
Confidence 9999865433222 23457789999999999888643 33 3899999864
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=127.59 Aligned_cols=120 Identities=17% Similarity=0.038 Sum_probs=86.5
Q ss_pred cCCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------c
Q 024766 113 GRRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------I 177 (263)
Q Consensus 113 ~~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~ 177 (263)
.+++|+++||||+ ++||++++++|+++|++|++++|+.+. .+.+.+.. .......+.+|+++. .
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~-~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA-RPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh-HHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHH
Confidence 3578999999998 599999999999999999999886432 11122211 112345788999876 2
Q ss_pred cCCCcEEEEccCCCCC----CC----CCCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 178 LLEVDQIYHLACPASP----VH----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~----~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
+..+|++|||||.... .. ..+++++.+++|+.|+.++++.+... +.+||++||.+.
T Consensus 86 ~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~ 152 (258)
T PRK07533 86 WGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGA 152 (258)
T ss_pred cCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEecccc
Confidence 3569999999997432 11 12346788999999999999886442 348999998643
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=127.28 Aligned_cols=114 Identities=14% Similarity=0.054 Sum_probs=85.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCcE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQ 183 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD~ 183 (263)
+|+++||||+|+||++++++|+++|++|++++|+.+...+. . ...+..+.+|+.+.. ..++|+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~-~----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 75 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEAL-A----AAGFTAVQLDVNDGAALARLAEELEAEHGGLDV 75 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-H----HCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 47899999999999999999999999999999875433221 1 124677888987751 246999
Q ss_pred EEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCccee
Q 024766 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVY 234 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vy 234 (263)
||||||........ ++++..+++|+.|+.++++.+.. ...+||++||...+
T Consensus 76 vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~ 134 (274)
T PRK05693 76 LINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGV 134 (274)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCcccc
Confidence 99999975433222 34677899999999999888643 22489999996543
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-14 Score=128.94 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=85.8
Q ss_pred CCCCEEEEEcCCC--hHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC-CCceEEEEcccccc------------cc
Q 024766 114 RRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEP------------IL 178 (263)
Q Consensus 114 ~~~k~vlVTGatG--~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~Dv~~~------------~~ 178 (263)
+++|+++||||++ +||++++++|+++|++|++++|+... .+...+... ......+.+|++|. .+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~-~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEAL-GKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKW 83 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHH-HHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5788999999997 99999999999999999999876421 222222211 11234678999876 23
Q ss_pred CCCcEEEEccCCCCCC----C----CCCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 179 LEVDQIYHLACPASPV----H----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~----~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
..+|++|||||..... . ..+++++.+++|+.|+.++++++... +.+||++||.+.
T Consensus 84 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~ 149 (271)
T PRK06505 84 GKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGS 149 (271)
T ss_pred CCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCc
Confidence 5699999999975321 1 12346788999999999998876432 248999999754
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=126.05 Aligned_cols=121 Identities=14% Similarity=0.131 Sum_probs=86.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhh-hhhc--CCCceEEEEccccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL-VHHF--RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~-~~~~--~~~~v~~~~~Dv~~~~------------ 177 (263)
.+++|+++||||+++||++++++|+++|++|++++|+.....+.. .+.. ...++.++.+|++|+.
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDED 84 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999998876433322222 2211 2357889999998762
Q ss_pred cCCCcEEEEccCCCCC------CCC----CCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcce
Q 024766 178 LLEVDQIYHLACPASP------VHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEV 233 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~------~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~v 233 (263)
+..+|+||||||.... ..+ .+.+...+++|+.+...+.+.+. +.+ .+||++||...
T Consensus 85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 155 (260)
T PRK08416 85 FDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGN 155 (260)
T ss_pred cCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEecccc
Confidence 3469999999986421 111 12356678999999887766653 333 38999999654
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-14 Score=124.23 Aligned_cols=122 Identities=15% Similarity=0.020 Sum_probs=87.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch-hhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~-~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
+++++++||||+|+||++++++|+++|++|+++.++..... +...... ...++..+.+|++++. +.
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYG 83 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence 35689999999999999999999999999988775432222 1111111 1345677888987652 24
Q ss_pred CCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
.+|+||||||........+ ..++.+++|+.|+.++++++.+. ..+||++||...|.
T Consensus 84 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~ 146 (252)
T PRK06077 84 VADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR 146 (252)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC
Confidence 6899999999744333221 23577899999999999987653 23899999987764
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=129.10 Aligned_cols=118 Identities=16% Similarity=0.084 Sum_probs=85.3
Q ss_pred CCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccc------------c
Q 024766 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------I 177 (263)
Q Consensus 114 ~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~------------~ 177 (263)
+++|+++||||+ ++||.+++++|+++|++|++++|+.+ ..+.+.+.. .... ..+.+|++|. .
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 467899999997 79999999999999999999988642 112222211 1122 5688999886 2
Q ss_pred cCCCcEEEEccCCCCC----CCC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 178 LLEVDQIYHLACPASP----VHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~----~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
+..+|++|||||.... ..+ .+++++.+++|+.|+.++++++... +.+||++||.+.
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~ 147 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGG 147 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCC
Confidence 3569999999997432 111 2346788999999999998887542 248999998643
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.2e-15 Score=132.70 Aligned_cols=120 Identities=14% Similarity=0.107 Sum_probs=88.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEcccccc----------ccC--
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEP----------ILL-- 179 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~----------~~~-- 179 (263)
.|++++||||+|+||++++++|+++|++|++++|+.++.++...++. ...++..+.+|+.+. .+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~ 131 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL 131 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999998765544333321 134667778888642 112
Q ss_pred CCcEEEEccCCCCCC--CCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPV--HYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~--~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vy 234 (263)
++|++|||||..... .+. ++.++.+++|+.|+.++++++. +.+ .+||++||.+.+
T Consensus 132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~ 197 (320)
T PLN02780 132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAI 197 (320)
T ss_pred CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhc
Confidence 366999999975421 122 2356789999999999888864 334 499999997664
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=125.48 Aligned_cols=120 Identities=23% Similarity=0.397 Sum_probs=91.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------cc-CCCcEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------IL-LEVDQIY 185 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~-~~iD~Vi 185 (263)
...+|+|+||||+|+||+.++++|+++|++|+++.|+.+....... ....+.++.+|+.+. .+ .++|+||
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi 90 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLP---QDPSLQIVRADVTEGSDKLVEAIGDDSDAVI 90 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcc---cCCceEEEEeeCCCCHHHHHHHhhcCCCEEE
Confidence 4567899999999999999999999999999999887543222111 124688888998763 23 4799999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCC
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLE 239 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~ 239 (263)
|++|..... ++...+.+|+.|+.++++++++.+. +||++||.++||...+
T Consensus 91 ~~~g~~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~ 141 (251)
T PLN00141 91 CATGFRRSF----DPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMG 141 (251)
T ss_pred ECCCCCcCC----CCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcc
Confidence 999853211 2223357899999999999998876 9999999999985433
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-14 Score=123.57 Aligned_cols=114 Identities=18% Similarity=0.111 Sum_probs=84.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCcE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQ 183 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD~ 183 (263)
+|+++||||+|+||.+++++|+++|++|++++|+.+...+.+.. ..+.++.+|+.+.. +..+|+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~ 77 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQ----AGAQCIQADFSTNAGIMAFIDELKQHTDGLRA 77 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHH----cCCEEEEcCCCCHHHHHHHHHHHHhhCCCccE
Confidence 57999999999999999999999999999999876543222221 23677889997752 245999
Q ss_pred EEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC---CeEEEEcCcce
Q 024766 184 IYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG---AKFLLTSTSEV 233 (263)
Q Consensus 184 Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~---~~iV~vSS~~v 233 (263)
+|||||....... .+++++.+++|+.++..+.+.+.+ .+ .+||++||...
T Consensus 78 lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~ 138 (236)
T PRK06483 78 IIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVV 138 (236)
T ss_pred EEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhh
Confidence 9999996433221 234678899999999887776543 22 38999988643
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-14 Score=125.77 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=87.7
Q ss_pred cCCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCCcc--chhhhhhhcCCCceEEEEcccccc------------
Q 024766 113 GRRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTG--RKDNLVHHFRNPRFELIRHDVVEP------------ 176 (263)
Q Consensus 113 ~~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~~~--~~~~~~~~~~~~~v~~~~~Dv~~~------------ 176 (263)
.+++|+++||||+ ++||.+++++|+++|++|++++|+... ..+.+.......++..+.+|++|+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (257)
T PRK08594 4 SLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKE 83 (257)
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHH
Confidence 3578899999997 899999999999999999998875321 112222222345677889999876
Q ss_pred ccCCCcEEEEccCCCCC----CCC-C---CCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 177 ILLEVDQIYHLACPASP----VHY-K---YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 177 ~~~~iD~Vi~~Ag~~~~----~~~-~---~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
.+..+|++|||||.... ... + +.+...+++|+.++.++++.+... +.+||++||...
T Consensus 84 ~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~ 151 (257)
T PRK08594 84 EVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGG 151 (257)
T ss_pred hCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCC
Confidence 23569999999996531 111 1 235677899999999888876543 248999999654
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=123.37 Aligned_cols=121 Identities=19% Similarity=0.138 Sum_probs=90.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.....+...+. ....+.++.+|+.|.. +.++
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 83 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGV-PADALRIGGIDLVDPQAARRAVDEVNRQFGRL 83 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHH-hhcCceEEEeecCCHHHHHHHHHHHHHHhCCc
Confidence 46789999999999999999999999999999999765544433332 2345677788887642 2469
Q ss_pred cEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
|+|||+||....... .+.+++.+++|+.++.++++++. +.+. +||++||...++
T Consensus 84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~ 146 (239)
T PRK12828 84 DALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALK 146 (239)
T ss_pred CEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhcc
Confidence 999999986543221 12346678999999999988864 3333 999999988775
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=125.01 Aligned_cols=122 Identities=15% Similarity=0.145 Sum_probs=89.0
Q ss_pred CCCCEEEEEcCCC--hHHHHHHHHHHhCCCeEEEEecCCcc---------c-hhhhhhhc--CCCceEEEEccccccc--
Q 024766 114 RRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTG---------R-KDNLVHHF--RNPRFELIRHDVVEPI-- 177 (263)
Q Consensus 114 ~~~k~vlVTGatG--~IG~~l~~~Ll~~G~~V~~l~r~~~~---------~-~~~~~~~~--~~~~v~~~~~Dv~~~~-- 177 (263)
+++|+++||||+| +||.+++++|+++|++|++++|++.. . ...+.... ...++.++.+|+++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 82 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAP 82 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence 4678999999995 89999999999999999999887211 0 00011111 1346888999998752
Q ss_pred ----------cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEEcCcceec
Q 024766 178 ----------LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 ----------~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~-~~iV~vSS~~vyg 235 (263)
+..+|+||||||........ +++++.+++|+.|+.++++++.+. + .+||++||...++
T Consensus 83 ~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~ 159 (256)
T PRK12748 83 NRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG 159 (256)
T ss_pred HHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC
Confidence 24689999999875433322 235677999999999999987542 2 3899999987665
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=124.06 Aligned_cols=119 Identities=18% Similarity=0.106 Sum_probs=88.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------cCCCcEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEVDQI 184 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~--------~~~iD~V 184 (263)
.+++++++||||+|+||.++++.|+++|++|++++|+.+...+... ...+..+.+|+.+.. ...+|+|
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~d~v 81 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG----ETGCEPLRLDVGDDAAIRAALAAAGAFDGL 81 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----HhCCeEEEecCCCHHHHHHHHHHhCCCCEE
Confidence 4677899999999999999999999999999999987543322211 123567788887752 2358999
Q ss_pred EEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc----C--CeEEEEcCcceec
Q 024766 185 YHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYG 235 (263)
Q Consensus 185 i~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~--~~iV~vSS~~vyg 235 (263)
|||||....... .+++++.+.+|+.++.++++++.+. + .+||++||...+.
T Consensus 82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~ 142 (245)
T PRK07060 82 VNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALV 142 (245)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcC
Confidence 999987543221 2246677889999999999887542 2 4899999976554
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.1e-15 Score=129.87 Aligned_cols=142 Identities=25% Similarity=0.392 Sum_probs=113.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCC-ccchhhhhhhcCCCceEEEEccccccc-------cCCCcEEEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFF-TGRKDNLVHHFRNPRFELIRHDVVEPI-------LLEVDQIYH 186 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~-~~~~~~~~~~~~~~~v~~~~~Dv~~~~-------~~~iD~Vi~ 186 (263)
++++||||+||||+..+..+...- ++.+.++... -.....+.+....+++.++.+|+.+.. .+++|.|+|
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vih 86 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVIH 86 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhhh
Confidence 799999999999999999999873 4666665431 112344444546789999999998872 246999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcCcceecCCCCCCcC-CCCCCCCCCCCcCccccccC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEHPQK-ETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS~~vyg~~~~~~~~-E~~~~~~~p~~~~~~Y~~sK 263 (263)
.|+..+.....-++-...+.|+.++..+++.++..|. +||++||..|||+.++.+.. |. .+.+|.+.|++||
T Consensus 87 faa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~-----s~~nPtnpyAasK 161 (331)
T KOG0747|consen 87 FAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEA-----SLLNPTNPYAASK 161 (331)
T ss_pred hHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccccc-----ccCCCCCchHHHH
Confidence 9987666555567778889999999999999999974 89999999999998887776 77 5778888888876
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=125.38 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=84.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhh---hc--CCCceEEEEccccccc-----------
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH---HF--RNPRFELIRHDVVEPI----------- 177 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~---~~--~~~~v~~~~~Dv~~~~----------- 177 (263)
+++|+++||||+|+||.+++++|+++|++|++++++.....+...+ .+ ...++..+.+|+++..
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999999988777654322222211 11 1346888999998761
Q ss_pred -cCCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcC
Q 024766 178 -LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTST 230 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS 230 (263)
+.++|+||||||....... .+++++.+++|+.|+.++++++.+. +.++++++|
T Consensus 86 ~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~s 146 (257)
T PRK12744 86 AFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVT 146 (257)
T ss_pred hhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEec
Confidence 2469999999997443222 2246788999999999999988653 236776643
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=124.63 Aligned_cols=120 Identities=18% Similarity=0.116 Sum_probs=88.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc------------cCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+|+++||||+|+||.+++++|+++|++|++++|+.....+...... ...++..+.+|+++.. +..
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5789999999999999999999999999999987554433322221 1246889999998751 246
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCcc-eec
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSE-VYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~-vyg 235 (263)
+|+||||||........+ ++++.+++|+.|+.++++++.+ .+ .+||++||.. .++
T Consensus 82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~ 147 (259)
T PRK12384 82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVG 147 (259)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccC
Confidence 899999999755433222 3567789999999988877643 34 3899999854 444
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=3e-14 Score=123.45 Aligned_cols=113 Identities=18% Similarity=0.159 Sum_probs=87.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+. . .. ...++..+.+|+.++. +..+
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~------~-~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF------L-TQ-EDYPFATFVLDVSDAAAVAQVCQRLLAETGPL 77 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch------h-hh-cCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 5678999999999999999999999999999999864 1 11 2446788899998752 2458
Q ss_pred cEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCccee
Q 024766 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVY 234 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vy 234 (263)
|+||||||....... .+++...+++|+.++.++++++.. .+ .+||++||....
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~ 139 (252)
T PRK08220 78 DVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAH 139 (252)
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhc
Confidence 999999997543332 234678899999999999988743 33 389999997543
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=126.85 Aligned_cols=118 Identities=12% Similarity=0.093 Sum_probs=84.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCcEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQI 184 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD~V 184 (263)
|+++||||+|+||++++++|+++|++|++++|+.+...+...+.....++..+.+|+++.. +..+|+|
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l 80 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL 80 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 4799999999999999999999999999999876544333333322236778899998752 3569999
Q ss_pred EEccCCCCCC--CC----CCCHHHHHHHHHHHHHHHHHHH----H-HcC-CeEEEEcCccee
Q 024766 185 YHLACPASPV--HY----KYNPVKTIKTNVMGTLNMLGLA----K-RVG-AKFLLTSTSEVY 234 (263)
Q Consensus 185 i~~Ag~~~~~--~~----~~~~~~~~~~Nv~gt~~ll~~a----~-~~~-~~iV~vSS~~vy 234 (263)
|||||..... .. .+++.+.+.+|+.++..+...+ . +.+ .+||++||.+.+
T Consensus 81 i~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~ 142 (259)
T PRK08340 81 VWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVK 142 (259)
T ss_pred EECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccC
Confidence 9999964321 11 1234566788998877665543 2 222 489999998665
|
|
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-14 Score=125.14 Aligned_cols=121 Identities=18% Similarity=0.122 Sum_probs=87.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccc--c------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVE--P------------ 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~--~------------ 176 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ...++.++.+|+.+ .
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 88 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE 88 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999997654333222221 23356666677642 1
Q ss_pred ccCCCcEEEEccCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcce
Q 024766 177 ILLEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEV 233 (263)
Q Consensus 177 ~~~~iD~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~v 233 (263)
.+..+|+||||||...... ..+.+++.+++|+.|+.++++++. +.+. +||++||...
T Consensus 89 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~ 155 (247)
T PRK08945 89 QFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVG 155 (247)
T ss_pred HhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhh
Confidence 2346999999998643321 123467889999999999888764 3343 8999999644
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=124.67 Aligned_cols=118 Identities=19% Similarity=0.167 Sum_probs=85.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh-cCCCceEEEEccccccc-----c-CCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPI-----L-LEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~Dv~~~~-----~-~~iD~Vi~~A 188 (263)
+|+++||||+|+||++++++|+++|++|++++|+.....+..... .....+.++.+|+.+.. + .++|+|||||
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a 81 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA 81 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence 578999999999999999999999999999998754332211111 12345788899998762 2 3799999999
Q ss_pred CCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcce
Q 024766 189 CPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEV 233 (263)
Q Consensus 189 g~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~v 233 (263)
|........ +.++..+++|+.|+.++.+.+ ++.+. +||++||...
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~ 135 (257)
T PRK09291 82 GIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAG 135 (257)
T ss_pred CcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhh
Confidence 975433322 235677899999988776654 34443 8999999644
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.57 E-value=1e-14 Score=118.65 Aligned_cols=118 Identities=18% Similarity=0.213 Sum_probs=89.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecC--Cccchhhhhhhc-CCCceEEEEcccccc------------ccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF--FTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~--~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
|+++||||+|+||.+++++|+++|. .|+++.|+ .+...+...+.. ...++.++.+|+.++ ....
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6899999999999999999999966 66777776 222222222221 357899999999876 2346
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vy 234 (263)
+|++|||||........+ ++++.+++|+.+...+.+++...+. +||++||....
T Consensus 81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~ 139 (167)
T PF00106_consen 81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGV 139 (167)
T ss_dssp ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGT
T ss_pred ccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhc
Confidence 999999999876444433 3568899999999999999877443 99999997554
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=130.00 Aligned_cols=107 Identities=19% Similarity=0.271 Sum_probs=85.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 191 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~~ 191 (263)
|+|+|||||||||++++++|+++|++|++++|+.+.... .....++++.+|+.|+ .+.++|+|||+++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~-----l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~ 75 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASF-----LKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSR 75 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhh-----HhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence 479999999999999999999999999999987533211 1223688899999876 456899999998532
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcce
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEV 233 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~v 233 (263)
..++...+++|+.|+.+++++|++.++ +||++||.++
T Consensus 76 -----~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~~~ 113 (317)
T CHL00194 76 -----PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSILNA 113 (317)
T ss_pred -----CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccccc
Confidence 123445678999999999999999997 9999999644
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-14 Score=139.02 Aligned_cols=121 Identities=17% Similarity=0.196 Sum_probs=91.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+.+|+++||||+|+||.+++++|+++|++|++++|+.+...+...+. ..++..+.+|++|+. +..
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 343 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL--GDEHLSVQADITDEAAVESAFAQIQARWGR 343 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999999999998755433322222 345667889998762 245
Q ss_pred CcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 181 VDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
+|+||||||.... ... .+++++.+++|+.|+.++++.+... +.+||++||.+.+.
T Consensus 344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 406 (520)
T PRK06484 344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLL 406 (520)
T ss_pred CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcC
Confidence 9999999997532 111 2346788999999999999987653 24899999976553
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.5e-14 Score=122.59 Aligned_cols=122 Identities=20% Similarity=0.187 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|+.+.. +..
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999887554433322221 2346888999998762 146
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~-~~iV~vSS~~vyg 235 (263)
+|+||||||........ +.++..+++|+.++.++++.+.+. + .+||++||...+.
T Consensus 85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 148 (250)
T PRK12939 85 LDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALW 148 (250)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhcc
Confidence 99999999975443222 235677899999999998887432 2 3899999976543
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-14 Score=125.18 Aligned_cols=118 Identities=20% Similarity=0.123 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.....+...+. ...++.+|+.++. ..++
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEV----GGLFVPTDVTDEDAVNALFDTAAETYGSV 80 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc----CCcEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 56889999999999999999999999999999998654322222221 1256788887752 2468
Q ss_pred cEEEEccCCCCCC--CCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCc-ceec
Q 024766 182 DQIYHLACPASPV--HYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTS-EVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~--~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~-~vyg 235 (263)
|+||||||..... ... +.+++.+++|+.|+.++++.+. +.+ .+||++||. +++|
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g 146 (255)
T PRK06057 81 DIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMG 146 (255)
T ss_pred CEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccC
Confidence 9999999865321 111 2367889999999988877753 333 389999885 5666
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-14 Score=122.35 Aligned_cols=117 Identities=23% Similarity=0.235 Sum_probs=91.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhh--hhhhcCCCceEEEEcccccc------------cc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN--LVHHFRNPRFELIRHDVVEP------------IL 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~--~~~~~~~~~v~~~~~Dv~~~------------~~ 178 (263)
.++||++++|||.|+||.+++++|+++|..+.+++.+.+..++. ++.+.....+.++.+|++++ .+
T Consensus 2 ~~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~f 81 (261)
T KOG4169|consen 2 DLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATF 81 (261)
T ss_pred cccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999999888888776654433 34444567899999999886 34
Q ss_pred CCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHH----HH-HcC---CeEEEEcCcce
Q 024766 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGL----AK-RVG---AKFLLTSTSEV 233 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~----a~-~~~---~~iV~vSS~~v 233 (263)
..+|++||+||+.. +.+++.++.+|+.|..|-..+ +. +.| .-||++||+.-
T Consensus 82 g~iDIlINgAGi~~----dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~G 140 (261)
T KOG4169|consen 82 GTIDILINGAGILD----DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAG 140 (261)
T ss_pred CceEEEEccccccc----chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccc
Confidence 56999999999765 567999999999997664444 43 232 27999999743
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.2e-14 Score=122.20 Aligned_cols=119 Identities=19% Similarity=0.128 Sum_probs=84.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC-ccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~-~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
++|+++||||+|+||++++++|+++|++|+++.++. ....+...+.. ...++..+.+|+.|.. +..
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE 81 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 578999999999999999999999999988865432 22222222211 2345777889998752 246
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcce
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEV 233 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~v 233 (263)
+|+||||||....... .+++++.+++|+.++.++.+.+. +.+. +||++||...
T Consensus 82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 143 (246)
T PRK12938 82 IDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNG 143 (246)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhc
Confidence 9999999997543222 23467789999999888777653 3443 8999999643
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-14 Score=125.65 Aligned_cols=120 Identities=11% Similarity=0.003 Sum_probs=84.7
Q ss_pred CCCCEEEEEcC--CChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------cc
Q 024766 114 RRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------IL 178 (263)
Q Consensus 114 ~~~k~vlVTGa--tG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~ 178 (263)
+++|+++|||| +++||++++++|+++|++|++.+|.. ...+.+.+.. .......+.+|+.|+ .+
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVD-KLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHW 82 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHh
Confidence 57889999997 67999999999999999999987652 2222232222 112345788999876 23
Q ss_pred CCCcEEEEccCCCCCC----C-CC----CCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPV----H-YK----YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~----~-~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vy 234 (263)
..+|++|||||+.... . .+ +.++..+++|+.++..+.+.+.. .+.+||++||.+.+
T Consensus 83 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~ 151 (261)
T PRK08690 83 DGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAV 151 (261)
T ss_pred CCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccc
Confidence 5699999999975431 1 11 23566789999999888877543 22489999987554
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-14 Score=121.62 Aligned_cols=113 Identities=13% Similarity=0.103 Sum_probs=86.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccCCCcEEEEc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHL 187 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~~iD~Vi~~ 187 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.... ...++..+.+|+.++ ....+|+||||
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ 74 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD--------LSGNFHFLQLDLSDDLEPLFDWVPSVDILCNT 74 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc--------cCCcEEEEECChHHHHHHHHHhhCCCCEEEEC
Confidence 5678999999999999999999999999999998864321 123577889999775 23569999999
Q ss_pred cCCCCC-CC----CCCCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCccee
Q 024766 188 ACPASP-VH----YKYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVY 234 (263)
Q Consensus 188 Ag~~~~-~~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vy 234 (263)
||.... .. ..+++++.+++|+.|+.++++++.. .+ .+||++||...+
T Consensus 75 ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~ 131 (235)
T PRK06550 75 AGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASF 131 (235)
T ss_pred CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhc
Confidence 986421 11 1224678899999999999998743 23 389999997554
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-14 Score=125.30 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=84.8
Q ss_pred CCCCEEEEEcCCC--hHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCC-CceEEEEcccccc------------cc
Q 024766 114 RRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRN-PRFELIRHDVVEP------------IL 178 (263)
Q Consensus 114 ~~~k~vlVTGatG--~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~Dv~~~------------~~ 178 (263)
+++|+++||||++ +||.+++++|+++|++|++.+|+. ...+.+.+.... .....+.+|++|+ .+
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~-~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE-VLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKW 84 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch-HHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHc
Confidence 4678999999997 899999999999999999988763 222222222111 1223568999876 23
Q ss_pred CCCcEEEEccCCCCC----CCC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 179 LEVDQIYHLACPASP----VHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~----~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
..+|++|||||.... ... .+++++.+++|+.+...+++.+... +.+||++||.+.
T Consensus 85 g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~ 150 (260)
T PRK06603 85 GSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGA 150 (260)
T ss_pred CCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCcc
Confidence 569999999996432 111 1246788999999999998876432 248999999654
|
|
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.1e-14 Score=120.55 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=91.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~ 179 (263)
+++|+++||||+|+||+++++.|+++|++|+++.|+.....+.....+ ...++..+.+|+.+.. +.
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFG 82 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999888876553322222221 2456788889998762 23
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEEcCc-ceecCC
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTS-EVYGDP 237 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~-~~iV~vSS~-~vyg~~ 237 (263)
++|+||||||........ +.+++.+.+|+.++.++++++... + .+||++||. +++|.+
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~ 150 (248)
T PRK05557 83 GVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNP 150 (248)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCC
Confidence 689999999975443222 235677899999999999887543 3 379999995 456543
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-14 Score=141.00 Aligned_cols=123 Identities=12% Similarity=0.058 Sum_probs=93.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ...++.++.+|+.|.. +.
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g 447 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHG 447 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999999999999997654433332221 2456888999998762 24
Q ss_pred CCcEEEEccCCCCCCCC------CCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHY------KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~------~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
.+|+||||||....... .++++..+++|+.|+.++++++. +.+ .+||++||.+.|.
T Consensus 448 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 514 (657)
T PRK07201 448 HVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQT 514 (657)
T ss_pred CCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcC
Confidence 69999999996432221 12467889999999999877753 344 3899999988875
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-14 Score=126.12 Aligned_cols=119 Identities=15% Similarity=0.048 Sum_probs=85.7
Q ss_pred CCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC-CCceEEEEcccccc------------cc
Q 024766 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEP------------IL 178 (263)
Q Consensus 114 ~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~Dv~~~------------~~ 178 (263)
+++|+++||||+ ++||.+++++|+++|++|++++|+.. ..+.+.+... ......+.+|++++ .+
T Consensus 8 ~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 86 (272)
T PRK08159 8 MAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-LKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW 86 (272)
T ss_pred ccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-HHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc
Confidence 467899999997 89999999999999999998877521 2222222211 12345688999875 23
Q ss_pred CCCcEEEEccCCCCC----CCC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 179 LEVDQIYHLACPASP----VHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~----~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
..+|++|||||.... ..+ .+++++.+++|+.|+.++++.+... +.+||++||.+.
T Consensus 87 g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~ 152 (272)
T PRK08159 87 GKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGA 152 (272)
T ss_pred CCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEecccc
Confidence 569999999997532 111 2346788999999999999987543 248999998644
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4e-14 Score=123.38 Aligned_cols=118 Identities=21% Similarity=0.248 Sum_probs=87.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++++++||||+|+||.+++++|+++|++|++++|+.+...+. .+.....++.++.+|+.++. +.++
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 87 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAAT-AARLPGAKVTATVADVADPAQVERVFDTAVERFGGL 87 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 5678999999999999999999999999999999875433322 22222236788899998762 2468
Q ss_pred cEEEEccCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCcc
Q 024766 182 DQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSE 232 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~ 232 (263)
|+|||+||...... ..+++.+.+++|+.++.++++.+. ..+ .+|+++||.+
T Consensus 88 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~ 149 (264)
T PRK12829 88 DVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVA 149 (264)
T ss_pred CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 99999999752211 123467889999999999888763 333 3577887754
|
|
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.8e-14 Score=122.17 Aligned_cols=120 Identities=17% Similarity=0.149 Sum_probs=86.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccc--------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP-------------- 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~-------------- 176 (263)
.+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ....+..+.+|+.+.
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~ 82 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAE 82 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHH
Confidence 3577899999999999999999999999999999998654433322221 233456677777542
Q ss_pred cc-CCCcEEEEccCCCCCC-CCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcc
Q 024766 177 IL-LEVDQIYHLACPASPV-HYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSE 232 (263)
Q Consensus 177 ~~-~~iD~Vi~~Ag~~~~~-~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~ 232 (263)
.+ ..+|+||||||..... .+. +++.+.+++|+.|+.++++++.+ .+ .++|++||..
T Consensus 83 ~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~ 149 (239)
T PRK08703 83 ATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESH 149 (239)
T ss_pred HhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccc
Confidence 12 4689999999964321 111 23566789999999998887643 33 4899998854
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-14 Score=122.98 Aligned_cols=116 Identities=11% Similarity=0.077 Sum_probs=87.4
Q ss_pred EEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------cCCCcEEEEccCCC
Q 024766 120 VVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEVDQIYHLACPA 191 (263)
Q Consensus 120 lVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~--------~~~iD~Vi~~Ag~~ 191 (263)
+||||+|+||++++++|+++|++|++++|+.+...+.........+++++.+|++++. ...+|++|||||..
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~~ 80 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAADT 80 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCCC
Confidence 5999999999999999999999999999875443332222212456888999998762 24589999999975
Q ss_pred CCCCCC----CCHHHHHHHHHHHHHHHHHHHHHcC-CeEEEEcCcceec
Q 024766 192 SPVHYK----YNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 192 ~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~-~~iV~vSS~~vyg 235 (263)
....+. +++++.+++|+.++.+++++....+ .+||++||.+.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~ 129 (230)
T PRK07041 81 PGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVR 129 (230)
T ss_pred CCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcC
Confidence 433222 3467889999999999999654444 3999999987775
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.8e-14 Score=120.54 Aligned_cols=120 Identities=16% Similarity=0.148 Sum_probs=88.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+............ ...++.++.+|+.|+. +..
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 356799999999999999999999999999999987654332222221 2346788889998762 245
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcce
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEV 233 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~v 233 (263)
+|+|||+||....... .+.+.+.+++|+.++.++++.+. +.+. +||++||...
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~ 144 (246)
T PRK05653 83 LDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSG 144 (246)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHh
Confidence 7999999986544222 12356778999999999988874 4443 9999999643
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.2e-14 Score=130.77 Aligned_cols=118 Identities=24% Similarity=0.350 Sum_probs=90.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhh--hhhh-cCCCceEEEEccccccc-----cC----C
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN--LVHH-FRNPRFELIRHDVVEPI-----LL----E 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~--~~~~-~~~~~v~~~~~Dv~~~~-----~~----~ 180 (263)
..++++|+||||+|+||++++++|+++|++|++++|+..+.... .... .....++++.+|++|.. +. +
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~ 136 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDP 136 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCC
Confidence 45678999999999999999999999999999999976442210 0111 12346889999998862 22 5
Q ss_pred CcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg 235 (263)
+|+||||+|.... .....+++|+.++.++++++++.+. +||++||.++|+
T Consensus 137 ~D~Vi~~aa~~~~-----~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~~ 187 (390)
T PLN02657 137 VDVVVSCLASRTG-----GVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQK 187 (390)
T ss_pred CcEEEECCccCCC-----CCccchhhHHHHHHHHHHHHHHcCCCEEEEEeeccccC
Confidence 9999999974221 1224467999999999999999986 899999998875
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.55 E-value=5e-14 Score=122.21 Aligned_cols=119 Identities=22% Similarity=0.158 Sum_probs=86.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCCCcE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEVDQ 183 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~iD~ 183 (263)
|+++||||+|+||.+++++|+++|++|++++|+.....+...+.. ...++..+.+|++|+. +..+|+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~ 80 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV 80 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence 589999999999999999999999999999987543333222221 2446888999998762 235899
Q ss_pred EEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCcc-eec
Q 024766 184 IYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSE-VYG 235 (263)
Q Consensus 184 Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~-vyg 235 (263)
||||||....... .+++++++++|+.++..+++++. +.+ .+||++||.. .+|
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~ 143 (254)
T TIGR02415 81 MVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEG 143 (254)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCC
Confidence 9999997543222 12356789999999988877654 322 3899999954 454
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-14 Score=120.46 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=84.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----c---CCCcEEEEc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----L---LEVDQIYHL 187 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~---~~iD~Vi~~ 187 (263)
+|+++||||+|+||++++++|+++ ++|++++|+.....+. .+. ...++++.+|+.|.. + .++|+|||+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~-~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ 78 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDEL-AAE--LPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHN 78 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHH-HHH--hccceEEecCCCCHHHHHHHHHhcCCCCEEEEC
Confidence 579999999999999999999999 9999999875432221 111 235778899998752 2 259999999
Q ss_pred cCCCCCCCCC----CCHHHHHHHHHHHHHHHHH----HHHHcCCeEEEEcCcceec
Q 024766 188 ACPASPVHYK----YNPVKTIKTNVMGTLNMLG----LAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 188 Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~----~a~~~~~~iV~vSS~~vyg 235 (263)
||........ +++.+.+++|+.+..++.+ .+++.+.++|++||...++
T Consensus 79 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~ 134 (227)
T PRK08219 79 AGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAHGHVVFINSGAGLR 134 (227)
T ss_pred CCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEcchHhcC
Confidence 9875432221 2356678999999555444 4455556999999987664
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.5e-14 Score=124.95 Aligned_cols=119 Identities=16% Similarity=0.067 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCC--hHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC-CCceEEEEcccccc------------cc
Q 024766 114 RRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEP------------IL 178 (263)
Q Consensus 114 ~~~k~vlVTGatG--~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~Dv~~~------------~~ 178 (263)
+++|+++||||++ +||++++++|+++|++|++.+|+. ...+...+... ......+.+|++|+ .+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~-~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 82 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVW 82 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch-hHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhc
Confidence 5688999999985 999999999999999999888762 22222222221 23456788999876 23
Q ss_pred CCCcEEEEccCCCCCCC-----C----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 179 LEVDQIYHLACPASPVH-----Y----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~-----~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
..+|++|||||...... . .+.++..+++|+.|...+.+++... +.+||++||.+.
T Consensus 83 g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~ 149 (262)
T PRK07984 83 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGA 149 (262)
T ss_pred CCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence 56999999999643211 1 1235677899999999888876432 248999998753
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7e-14 Score=120.37 Aligned_cols=120 Identities=18% Similarity=0.139 Sum_probs=87.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
.|+++||||+|+||.+++++|+++|++|++++|+............ ...++.++.+|+.+.. +..+
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i 81 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPV 81 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 3689999999999999999999999999999987542111111111 2346888999998762 2459
Q ss_pred cEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
|+||||||....... .+.++..+++|+.|+.++++.+ ++.+. +||++||...+.
T Consensus 82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~ 144 (245)
T PRK12824 82 DILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLK 144 (245)
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhcc
Confidence 999999997543222 2346778899999999986654 44443 999999976664
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.8e-14 Score=139.63 Aligned_cols=123 Identities=17% Similarity=0.092 Sum_probs=92.7
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~ 179 (263)
..+.+|+++||||+|+||.+++++|+++|++|++++|+.+..............+..+.+|++++. +.
T Consensus 418 ~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 418 KPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 346789999999999999999999999999999999976544333222211246788899998762 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vy 234 (263)
++|+||||||........ +.++..+++|+.|+.++++++. +.+ .+||++||...+
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~ 562 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAV 562 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCcccc
Confidence 699999999975543322 2467789999999999977763 333 489999997554
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.5e-14 Score=121.52 Aligned_cols=120 Identities=18% Similarity=0.153 Sum_probs=85.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++++||||+|+||.+++++|+++|++|++++++.....+.....+ ...++.++.+|+.+.. +..+
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL 81 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999999999999998887654332222222211 2345778899998762 2468
Q ss_pred cEEEEccCCCCCCC-C----CCCHHHHHHHHHHHHHHHHHHHHHc------C--CeEEEEcCcc-eec
Q 024766 182 DQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKRV------G--AKFLLTSTSE-VYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~~------~--~~iV~vSS~~-vyg 235 (263)
|+||||||...... . .+++++++++|+.|+.++++.+.+. + .+||++||.+ .++
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~ 149 (248)
T PRK06123 82 DALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLG 149 (248)
T ss_pred CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCC
Confidence 99999999754321 1 1245688999999999988886542 1 2699999964 555
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7e-14 Score=122.06 Aligned_cols=120 Identities=13% Similarity=0.085 Sum_probs=89.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc--------cCCCcE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI--------LLEVDQ 183 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~--------~~~iD~ 183 (263)
+++|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ...++.++.+|++++. ...+|+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 567899999999999999999999999999999987654433222221 2346788899998752 356999
Q ss_pred EEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcce
Q 024766 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEV 233 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~v 233 (263)
+|||||........ ++++..+++|+.+..++++.+ ++.+ .+||++||...
T Consensus 85 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~ 143 (259)
T PRK06125 85 LVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAG 143 (259)
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccc
Confidence 99999975332222 246778999999999988876 3333 38999988643
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.9e-14 Score=123.56 Aligned_cols=117 Identities=17% Similarity=0.153 Sum_probs=85.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cCCCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LLEVD 182 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~~iD 182 (263)
|+++||||+|+||.+++++|+++|++|++++|+.+...+...+.. ....+..+.+|+.++. +..+|
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 479999999999999999999999999999887554333322221 2233455788887652 24589
Q ss_pred EEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----c--CCeEEEEcCcce
Q 024766 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----V--GAKFLLTSTSEV 233 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~--~~~iV~vSS~~v 233 (263)
+||||||........ ++++..+++|+.|+.++++++.. . +.+||++||...
T Consensus 81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~ 141 (272)
T PRK07832 81 VVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAG 141 (272)
T ss_pred EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccc
Confidence 999999975432222 24577899999999999998642 2 248999999754
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.1e-14 Score=121.85 Aligned_cols=122 Identities=17% Similarity=0.142 Sum_probs=89.5
Q ss_pred cCCCCEEEEEcCCC-hHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh---cCCCceEEEEccccccc-----------
Q 024766 113 GRRRLRIVVTGGAG-FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEPI----------- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG-~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~Dv~~~~----------- 177 (263)
.+++|+++||||+| +||.++++.|+++|++|++++|+.+...+...+. ....++..+.+|+.++.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 93 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVE 93 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence 35678999999997 8999999999999999999988765443332222 22346888999998751
Q ss_pred -cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCccee
Q 024766 178 -LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVY 234 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~vy 234 (263)
+..+|+||||||........ +++.+.+++|+.|+.++++.+.+ .+ .+||++||...+
T Consensus 94 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~ 161 (262)
T PRK07831 94 RLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGW 161 (262)
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhc
Confidence 24689999999975433322 24667789999999998887642 32 389999886443
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.2e-14 Score=116.92 Aligned_cols=130 Identities=17% Similarity=0.060 Sum_probs=99.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
.++.|..+||||+++||++++..|++.|++|.+.+++....++....+-....-..+.+|+.++ .+..
T Consensus 11 r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~ 90 (256)
T KOG1200|consen 11 RLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGT 90 (256)
T ss_pred HHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCC
Confidence 4567789999999999999999999999999999987765554444442334556788898775 2345
Q ss_pred CcEEEEccCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHc-------CCeEEEEcCc-ceecCCCCCCc
Q 024766 181 VDQIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKRV-------GAKFLLTSTS-EVYGDPLEHPQ 242 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~-------~~~iV~vSS~-~vyg~~~~~~~ 242 (263)
+++++||||+.-... ..++|++.+.+|+.|++.+.+++.+. +.+||++||+ +-.|+..+..|
T Consensus 91 psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~GQtnY 164 (256)
T KOG1200|consen 91 PSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQTNY 164 (256)
T ss_pred CcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccccchhh
Confidence 999999999865422 34579999999999999999987543 2389999994 66665554433
|
|
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.54 E-value=6e-14 Score=123.20 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=82.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc----------------
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI---------------- 177 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~---------------- 177 (263)
++++||||+|+||.+++++|+++|++|++++|+..+..+.+.+.+ ...++..+.+|++|..
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~ 81 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRA 81 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHc
Confidence 479999999999999999999999999998765333322222222 1235667889998862
Q ss_pred cCCCcEEEEccCCCCCCCCC----C-----------CHHHHHHHHHHHHHHHHHHHHHcC-----------CeEEEEcCc
Q 024766 178 LLEVDQIYHLACPASPVHYK----Y-----------NPVKTIKTNVMGTLNMLGLAKRVG-----------AKFLLTSTS 231 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~----~-----------~~~~~~~~Nv~gt~~ll~~a~~~~-----------~~iV~vSS~ 231 (263)
+..+|+||||||........ + ++.+.+++|+.++.++++++.... .+||++||.
T Consensus 82 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s~ 161 (267)
T TIGR02685 82 FGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDA 161 (267)
T ss_pred cCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehhh
Confidence 24699999999964432211 1 256779999999999988753221 267888776
Q ss_pred ce
Q 024766 232 EV 233 (263)
Q Consensus 232 ~v 233 (263)
..
T Consensus 162 ~~ 163 (267)
T TIGR02685 162 MT 163 (267)
T ss_pred hc
Confidence 43
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.3e-14 Score=120.81 Aligned_cols=118 Identities=16% Similarity=0.157 Sum_probs=83.8
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC----CCceEEEEccccccc------------cCCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR----NPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++||||+|+||.++++.|+++|++|++++|+.....+...+.+. ...+..+.+|+.+.. +..+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 80 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL 80 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence 389999999999999999999999999999873332222222211 223455778987752 3468
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHH----HHHHHHHHHHHcCC-eEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVM----GTLNMLGLAKRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~----gt~~ll~~a~~~~~-~iV~vSS~~vyg 235 (263)
|+||||||........ +++++.+++|+. ++.++++.+++.+. +||++||...+.
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~ 143 (251)
T PRK07069 81 SVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFK 143 (251)
T ss_pred cEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhcc
Confidence 9999999975543322 235677899998 55666666666554 899999987765
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.3e-14 Score=120.86 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=84.1
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+|+++||||+|+||..+++.|+++|++|+++.++.....+...... ...++..+.+|+.+.. +..+
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 81 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRL 81 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence 5799999999999999999999999999877654332222222211 2346888999997652 2469
Q ss_pred cEEEEccCCCCCCC-C----CCCHHHHHHHHHHHHHHHHHHHHHc--------CCeEEEEcCcc-eec
Q 024766 182 DQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKRV--------GAKFLLTSTSE-VYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~~--------~~~iV~vSS~~-vyg 235 (263)
|+||||||...... . .++++..+++|+.|+.++++.+.+. +.+||++||.+ .++
T Consensus 82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~ 149 (248)
T PRK06947 82 DALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLG 149 (248)
T ss_pred CEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCC
Confidence 99999999753321 1 1235677999999999887654321 13699999964 455
|
|
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-13 Score=124.74 Aligned_cols=120 Identities=12% Similarity=0.014 Sum_probs=85.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc---------chhhhhhhc--CCCceEEEEcccccc-----
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG---------RKDNLVHHF--RNPRFELIRHDVVEP----- 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~---------~~~~~~~~~--~~~~v~~~~~Dv~~~----- 176 (263)
.+++|+++||||+++||.+++++|++.|++|++++|+... ..+.+.+.+ ...++..+.+|+.++
T Consensus 5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 3678999999999999999999999999999999987421 111111111 134567889999876
Q ss_pred -------ccCCCcEEEEcc-CCCC--C--CCC-C---CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcc
Q 024766 177 -------ILLEVDQIYHLA-CPAS--P--VHY-K---YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSE 232 (263)
Q Consensus 177 -------~~~~iD~Vi~~A-g~~~--~--~~~-~---~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~ 232 (263)
.+..+|++|||| |... . ... + +++.+.+++|+.++..+++++.. .+ .+||++||..
T Consensus 85 ~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~ 161 (305)
T PRK08303 85 LVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGT 161 (305)
T ss_pred HHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcc
Confidence 235699999999 7421 0 111 1 23567789999999998877643 22 4899999854
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-14 Score=121.08 Aligned_cols=121 Identities=16% Similarity=0.082 Sum_probs=88.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEE-ecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-DNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l-~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
+++|+++||||+|+||.+++++|+++|++|+++ +|+.+...+...... ...++.++.+|+.+.. +.
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFG 82 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 567899999999999999999999999999998 776544332222221 2346888999998762 23
Q ss_pred CCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vy 234 (263)
++|+|||+||....... .+.+++.+++|+.|+.++++.+.. .+ .+||++||...+
T Consensus 83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~ 146 (247)
T PRK05565 83 KIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGL 146 (247)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhc
Confidence 69999999997532221 223577899999999998887653 33 379999996543
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-14 Score=124.58 Aligned_cols=120 Identities=13% Similarity=0.035 Sum_probs=86.2
Q ss_pred CCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCCcc--chhhhhhhc-CCCceEEEEcccccc------------
Q 024766 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTG--RKDNLVHHF-RNPRFELIRHDVVEP------------ 176 (263)
Q Consensus 114 ~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~~~--~~~~~~~~~-~~~~v~~~~~Dv~~~------------ 176 (263)
+++|+++||||+ ++||++++++|+++|++|++.+|+.+. ..+.+.+.. ....+..+.+|+.|+
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~ 83 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ 83 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence 568899999986 899999999999999999888765431 122222221 123466788999876
Q ss_pred ccCCCcEEEEccCCCCC----CCC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 177 ILLEVDQIYHLACPASP----VHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 177 ~~~~iD~Vi~~Ag~~~~----~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
.+..+|++|||||.... ..+ .+++++.+++|+.|+.++++++... +.+||++||...
T Consensus 84 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~ 151 (258)
T PRK07370 84 KWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGG 151 (258)
T ss_pred HcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEecccc
Confidence 23469999999997531 122 2346788999999999988876432 348999999653
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-14 Score=121.75 Aligned_cols=122 Identities=11% Similarity=0.096 Sum_probs=90.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCe-EEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~-V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
+++|+++||||+|+||..++++|+++|++ |++++|+.+...+...... ...++.++.+|++++. +.
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 83 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG 83 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 57789999999999999999999999998 9999887544332222221 2346778889998752 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~vyg 235 (263)
++|+||||||........ +.++..+++|+.|+.++++++.+ .+ .++|++||...++
T Consensus 84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~ 149 (260)
T PRK06198 84 RLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHG 149 (260)
T ss_pred CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCccccc
Confidence 689999999975432221 23467799999999999888743 22 3799999987775
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.6e-14 Score=134.16 Aligned_cols=119 Identities=19% Similarity=0.248 Sum_probs=89.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
.++|+++||||+++||.+++++|+++|++|++++|+.+...+...+. ..++..+.+|++++. +..+
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSL--GPDHHALAMDVSDEAQIREGFEQLHREFGRI 80 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceeEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999999998765544333322 345678899998762 2469
Q ss_pred cEEEEccCCCCC--CC----CCCCHHHHHHHHHHHHHHHHHHHHHc------CCeEEEEcCccee
Q 024766 182 DQIYHLACPASP--VH----YKYNPVKTIKTNVMGTLNMLGLAKRV------GAKFLLTSTSEVY 234 (263)
Q Consensus 182 D~Vi~~Ag~~~~--~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~------~~~iV~vSS~~vy 234 (263)
|+||||||.... .. ..+++++.+++|+.|+.++++++... +.+||++||....
T Consensus 81 D~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~ 145 (520)
T PRK06484 81 DVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGL 145 (520)
T ss_pred CEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccC
Confidence 999999997322 11 12346788999999999998886432 2389999997554
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.3e-14 Score=122.88 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=84.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc---------c-------C
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI---------L-------L 179 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~---------~-------~ 179 (263)
+++++||||+|+||.+++++|+++|++|++++|+..... ... ...++..+.+|+.+.. . .
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~~---~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 76 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSL---AAA-AGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGA 76 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchhh---hhc-cCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCC
Confidence 358999999999999999999999999999998754311 111 2346788899987752 0 1
Q ss_pred CCcEEEEccCCCCCCC-C----CCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
.+|++|||||...... . .+.+++.+++|+.|+..+++.+. +.+ .+||++||.+.+.
T Consensus 77 ~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~ 142 (243)
T PRK07023 77 SRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARN 142 (243)
T ss_pred CceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcC
Confidence 4899999999754321 1 12356778999999877766654 333 3899999987654
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.9e-14 Score=123.19 Aligned_cols=119 Identities=15% Similarity=-0.013 Sum_probs=84.2
Q ss_pred CCCCEEEEEcC--CChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC-CCceEEEEcccccc------------cc
Q 024766 114 RRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEP------------IL 178 (263)
Q Consensus 114 ~~~k~vlVTGa--tG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~Dv~~~------------~~ 178 (263)
+++|+++|||| +++||.+++++|+++|++|++++|... ..+.+.+... ......+.+|++|+ .+
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHW 82 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchH-HHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHh
Confidence 56789999996 689999999999999999998865421 1222222111 12234678899876 23
Q ss_pred CCCcEEEEccCCCCCC----C-----CCCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 179 LEVDQIYHLACPASPV----H-----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~----~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
..+|++|||||..... . ..++++..+++|+.|+..+++++... +.+||++||.+.
T Consensus 83 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~ 149 (260)
T PRK06997 83 DGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGA 149 (260)
T ss_pred CCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEecccc
Confidence 5699999999975321 1 11246778999999999998887543 248999998654
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.7e-14 Score=119.92 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=89.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++++++||||+|+||..+++.|+++|++|++++|+..+..+...+.. ...++..+.+|++++. ...
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 567899999999999999999999999999999987654433333221 2456788899987752 135
Q ss_pred CcEEEEccCCCCCCC-------------CCCCHHHHHHHHHHHHHHHHHHHH----Hc-C-CeEEEEcCcceecC
Q 024766 181 VDQIYHLACPASPVH-------------YKYNPVKTIKTNVMGTLNMLGLAK----RV-G-AKFLLTSTSEVYGD 236 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~-------------~~~~~~~~~~~Nv~gt~~ll~~a~----~~-~-~~iV~vSS~~vyg~ 236 (263)
+|+||||||...... ..+.+...+++|+.|+.++++.+. +. . ..||++||.+.|+.
T Consensus 83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~~ 157 (253)
T PRK08217 83 LNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAGN 157 (253)
T ss_pred CCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccCC
Confidence 899999999643211 112356778999999988776542 22 2 37999999887764
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.8e-14 Score=122.78 Aligned_cols=124 Identities=16% Similarity=0.092 Sum_probs=94.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc----CCCceEEEEcccccc-----------
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF----RNPRFELIRHDVVEP----------- 176 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~Dv~~~----------- 176 (263)
..+.+|+++||||+.+||++++++|++.|++|++.+|+.+...+...... ...++..+.+|+.++
T Consensus 4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~ 83 (270)
T KOG0725|consen 4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAV 83 (270)
T ss_pred ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999998776555444432 245689999999765
Q ss_pred -c-cCCCcEEEEccCCCCCCC-----CCCCHHHHHHHHHHH-HHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 177 -I-LLEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMG-TLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 177 -~-~~~iD~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~g-t~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
. +.++|++|||||...... ..+.++..+++|+.| ++.+..++. +.+ ..|+++||.+.+.
T Consensus 84 ~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~ 155 (270)
T KOG0725|consen 84 EKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVG 155 (270)
T ss_pred HHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEecccccc
Confidence 2 567999999999765442 223578889999996 666665553 222 3899999876554
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=120.34 Aligned_cols=122 Identities=12% Similarity=0.104 Sum_probs=85.6
Q ss_pred cCCCCEEEEEcCCC--hHHHHHHHHHHhCCCeEEEEecCCccc----------hhhhhhhc--CCCceEEEEcccccc--
Q 024766 113 GRRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGR----------KDNLVHHF--RNPRFELIRHDVVEP-- 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG--~IG~~l~~~Ll~~G~~V~~l~r~~~~~----------~~~~~~~~--~~~~v~~~~~Dv~~~-- 176 (263)
.+++|+++||||+| +||.+++++|+++|++|+++++....+ .....+.+ ...++..+.+|+.+.
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~ 82 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDA 82 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 46789999999995 899999999999999999876431110 11111111 234678889999875
Q ss_pred ----------ccCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCccee
Q 024766 177 ----------ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVY 234 (263)
Q Consensus 177 ----------~~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vy 234 (263)
.+..+|+||||||........ +.+++.+++|+.|...+.+.+ ++.+ .+||++||....
T Consensus 83 i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 159 (256)
T PRK12859 83 PKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQ 159 (256)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccC
Confidence 234589999999975433222 245677999999988886554 3332 399999997644
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.7e-14 Score=119.41 Aligned_cols=117 Identities=17% Similarity=0.197 Sum_probs=85.8
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cCCCcEE
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LLEVDQI 184 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~~iD~V 184 (263)
++||||+|+||.+++++|+++|++|++++|+.....+...+.+ ...++.++.+|+.+.. ...+|++
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~l 80 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGV 80 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence 5899999999999999999999999998876443332222221 2356888999998762 2458999
Q ss_pred EEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH-----HcC-CeEEEEcCc-ceec
Q 024766 185 YHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK-----RVG-AKFLLTSTS-EVYG 235 (263)
Q Consensus 185 i~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~-----~~~-~~iV~vSS~-~vyg 235 (263)
|||||......+ .++++.++++|+.|+.++++++. +.+ .+||++||. +.++
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~ 142 (239)
T TIGR01831 81 VLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMG 142 (239)
T ss_pred EECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccC
Confidence 999997543322 23567889999999999988652 223 389999995 4555
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-13 Score=122.03 Aligned_cols=113 Identities=19% Similarity=0.175 Sum_probs=84.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc-----------cCCCcE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI-----------LLEVDQ 183 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~-----------~~~iD~ 183 (263)
+|+++|||+ |+||++++++|+ +|++|++++|+.+...+...+.. ...++.++.+|+.|+. +..+|+
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 568999997 799999999996 89999999987654433322221 1346788999998762 246999
Q ss_pred EEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
||||||... ...++++++++|+.|+.++++++.+. +.++|++||.+.
T Consensus 80 li~nAG~~~---~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~ 129 (275)
T PRK06940 80 LVHTAGVSP---SQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSG 129 (275)
T ss_pred EEECCCcCC---chhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEeccc
Confidence 999998642 23568899999999999999987543 236778877654
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.8e-13 Score=117.67 Aligned_cols=116 Identities=20% Similarity=0.194 Sum_probs=83.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhh-hhh-cCCCceEEEEccccccc------------cCCCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL-VHH-FRNPRFELIRHDVVEPI------------LLEVD 182 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~-~~~-~~~~~v~~~~~Dv~~~~------------~~~iD 182 (263)
|+++||||+|+||++++++|+++|++|+++.|+.....+.. .+. ....++.++.+|+.++. +..+|
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID 80 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence 58999999999999999999999999999887322222211 111 12346888999998752 24599
Q ss_pred EEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcc
Q 024766 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSE 232 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~ 232 (263)
+||||||........ +++++.+++|+.++..+++.+ ++.+. +||++||..
T Consensus 81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~ 139 (242)
T TIGR01829 81 VLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVN 139 (242)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchh
Confidence 999999875432222 245677899999988866554 44444 899999964
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=120.82 Aligned_cols=117 Identities=13% Similarity=0.130 Sum_probs=84.8
Q ss_pred CCCCEEEEEcC--CChHHHHHHHHHHhCCCeEEEEecCCc-cchhhhhhhcCCCceEEEEccccccc------------c
Q 024766 114 RRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFFT-GRKDNLVHHFRNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 114 ~~~k~vlVTGa--tG~IG~~l~~~Ll~~G~~V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~ 178 (263)
+++|+++|||| +++||.+++++|+++|++|++++|+.. +..+.+.+... ..+..+.+|++|+. +
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 83 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP-EPAPVLELDVTNEEHLASLADRVREHV 83 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC-CCCcEEeCCCCCHHHHHHHHHHHHHHc
Confidence 56789999999 899999999999999999999987531 22222222222 25678899998762 3
Q ss_pred CCCcEEEEccCCCCC----CCC-C---CCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCc
Q 024766 179 LEVDQIYHLACPASP----VHY-K---YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTS 231 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~----~~~-~---~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~ 231 (263)
..+|++|||||+... ..+ + +++++.+++|+.|+.++++.+... +.+||++|+.
T Consensus 84 g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~ 147 (256)
T PRK07889 84 DGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFD 147 (256)
T ss_pred CCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeec
Confidence 569999999997532 111 1 235667999999999988886532 2489998764
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-13 Score=118.42 Aligned_cols=119 Identities=8% Similarity=0.055 Sum_probs=86.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------ccC-
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL- 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~~- 179 (263)
+++|+++||||+++||.+++++|+++|++|++++|+.+..++...+.. ...++..+.+|+.++ .+.
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 568899999999999999999999999999999987665544333321 234567788888765 235
Q ss_pred CCcEEEEccCCCCCC-CCCC----CHHHHHHHHHHHHHHHHHHH----HHcC--CeEEEEcCcc
Q 024766 180 EVDQIYHLACPASPV-HYKY----NPVKTIKTNVMGTLNMLGLA----KRVG--AKFLLTSTSE 232 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~-~~~~----~~~~~~~~Nv~gt~~ll~~a----~~~~--~~iV~vSS~~ 232 (263)
.+|++|||||..... .+.+ ++.+.+++|+.++..+++.+ ++.+ ..||++||..
T Consensus 83 ~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~ 146 (227)
T PRK08862 83 APDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHD 146 (227)
T ss_pred CCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCC
Confidence 799999999853322 2222 34566788999988876654 3333 4899999864
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=117.56 Aligned_cols=120 Identities=16% Similarity=0.078 Sum_probs=84.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEe-cCCccchhhhhhhc-CCCceEEEEccccccc------------cCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID-NFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~-r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++++||||+|+||.+++++|+++|++|+++. |+.+...+...+.. ...++..+.+|+.|+. ...+
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i 80 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL 80 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence 46899999999999999999999999998754 43332222222221 1345788999998762 2458
Q ss_pred cEEEEccCCCCCCC-C----CCCHHHHHHHHHHHHHHHHHHHHHc--------CCeEEEEcCcce-ec
Q 024766 182 DQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKRV--------GAKFLLTSTSEV-YG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~~--------~~~iV~vSS~~v-yg 235 (263)
|+||||||...... . .++++..+++|+.++.++++.+... +.+||++||... ++
T Consensus 81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~ 148 (247)
T PRK09730 81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLG 148 (247)
T ss_pred CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccC
Confidence 99999999643222 1 1235678999999999888765432 236999999754 44
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-13 Score=115.46 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=92.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
..|.+|+||||+++||.+|+++|.+.|-+|++..|+.....+... ..+.+....+|+.|.. ...+
T Consensus 3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~---~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~l 79 (245)
T COG3967 3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKA---ENPEIHTEVCDVADRDSRRELVEWLKKEYPNL 79 (245)
T ss_pred ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHh---cCcchheeeecccchhhHHHHHHHHHhhCCch
Confidence 457799999999999999999999999999999997665554443 3467778888988763 2358
Q ss_pred cEEEEccCCCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHHc-----CCeEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHYK------YNPVKTIKTNVMGTLNMLGLAKRV-----GAKFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~------~~~~~~~~~Nv~gt~~ll~~a~~~-----~~~iV~vSS~~vyg 235 (263)
++||||||+.....+. ++.++.+.+|+.++..+..++..+ ..-||+|||.=.+-
T Consensus 80 NvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafv 144 (245)
T COG3967 80 NVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFV 144 (245)
T ss_pred heeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccC
Confidence 9999999986554432 234677899999999988886443 23799999975554
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-13 Score=127.90 Aligned_cols=105 Identities=15% Similarity=0.159 Sum_probs=80.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~ 187 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.++..+.... ....+..+.+|+.|+ .+.++|++|||
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~--~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInn 252 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEING--EDLPVKTLHWQVGQEAALAELLEKVDILIIN 252 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhh--cCCCeEEEEeeCCCHHHHHHHhCCCCEEEEC
Confidence 35789999999999999999999999999999999875443222211 123466788898876 35679999999
Q ss_pred cCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHH
Q 024766 188 ACPASPVH-YKYNPVKTIKTNVMGTLNMLGLAK 219 (263)
Q Consensus 188 Ag~~~~~~-~~~~~~~~~~~Nv~gt~~ll~~a~ 219 (263)
||...... ..+++++.+++|+.|+.++++++.
T Consensus 253 AGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~l 285 (406)
T PRK07424 253 HGINVHGERTPEAINKSYEVNTFSAWRLMELFF 285 (406)
T ss_pred CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99753322 223467889999999999999864
|
|
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.8e-13 Score=123.02 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=84.3
Q ss_pred EEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCCCcEEE
Q 024766 120 VVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEVDQIY 185 (263)
Q Consensus 120 lVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~iD~Vi 185 (263)
+||||+++||.+++++|+++| ++|++++|+.+...+...+.. ....+.++.+|+.+.. ...+|+||
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI 80 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV 80 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence 599999999999999999999 999999887554333332221 2346778899997752 24589999
Q ss_pred EccCCCCCC-C----CCCCHHHHHHHHHHHHHHHHHHH----HHcC---CeEEEEcCccee
Q 024766 186 HLACPASPV-H----YKYNPVKTIKTNVMGTLNMLGLA----KRVG---AKFLLTSTSEVY 234 (263)
Q Consensus 186 ~~Ag~~~~~-~----~~~~~~~~~~~Nv~gt~~ll~~a----~~~~---~~iV~vSS~~vy 234 (263)
||||+.... . ..++++..+++|+.|+.++++.+ ++.+ .+||++||...+
T Consensus 81 nnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~~~~ 141 (308)
T PLN00015 81 CNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSITGN 141 (308)
T ss_pred ECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccc
Confidence 999974321 1 12346788999999988887664 3333 499999997654
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.4e-13 Score=116.74 Aligned_cols=120 Identities=12% Similarity=0.047 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||.++++.|+++|++|++++|+.+...+.........++..+.+|+.++. +..+
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 82 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAI 82 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999999999999976543322222212236788899998752 3458
Q ss_pred cEEEEccCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 182 DQIYHLACPASPVHY--KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~--~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
|.+||++|....... .++++..+++|+.+..++++.+.+. +.++|++||...
T Consensus 83 d~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~ 139 (238)
T PRK05786 83 DGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSG 139 (238)
T ss_pred CEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence 999999985432111 1335677899999999888887543 348999998644
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=119.68 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=82.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc------------C--CC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL------------L--EV 181 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~------------~--~i 181 (263)
+|+++||||+|+||++++++|+++|++|++++|...+..+.+... ...++.++.+|+++... . ..
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQ-YNSNLTFHSLDLQDVHELETNFNEILSSIQEDNV 79 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhc-cCCceEEEEecCCCHHHHHHHHHHHHHhcCcccC
Confidence 468999999999999999999999999999998753322222222 23467888999987621 1 11
Q ss_pred --cEEEEccCCCCCC-CC----CCCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCccee
Q 024766 182 --DQIYHLACPASPV-HY----KYNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVY 234 (263)
Q Consensus 182 --D~Vi~~Ag~~~~~-~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vy 234 (263)
+++|||||...+. .+ .+++.+.+++|+.|...+++.+. +.+ .+||++||...+
T Consensus 80 ~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~ 145 (251)
T PRK06924 80 SSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAK 145 (251)
T ss_pred CceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhc
Confidence 2789999875432 12 22456778999999877776653 322 389999997654
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-13 Score=118.30 Aligned_cols=112 Identities=17% Similarity=0.116 Sum_probs=81.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-------------cCCCcE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-------------LLEVDQ 183 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-------------~~~iD~ 183 (263)
|+++||||+|+||.++++.|+++|++|++++|+.++.+. .. ...+..+.+|+.+.. ...+|.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~-~~----~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ 77 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVAR-MN----SLGFTGILLDLDDPESVERAADEVIALTDNRLYG 77 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHH-HH----hCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeE
Confidence 689999999999999999999999999999987543322 11 124667888887641 145899
Q ss_pred EEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHH----HHHHHcCC-eEEEEcCcce
Q 024766 184 IYHLACPASPVHY----KYNPVKTIKTNVMGTLNML----GLAKRVGA-KFLLTSTSEV 233 (263)
Q Consensus 184 Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll----~~a~~~~~-~iV~vSS~~v 233 (263)
+|||||....... .+++++.+++|+.|+.++. +.+++.+. +||++||...
T Consensus 78 ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~ 136 (256)
T PRK08017 78 LFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMG 136 (256)
T ss_pred EEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCccc
Confidence 9999986443222 2235678999999988864 44555554 8999999643
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=117.33 Aligned_cols=117 Identities=11% Similarity=0.130 Sum_probs=83.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccc------------ccCCCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ILLEVD 182 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~------------~~~~iD 182 (263)
|+++||||+++||.+++++|+ +|++|++++|+.++.++...+.. ....+..+.+|+.|+ ....+|
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 579999999999999999999 59999999987655444333332 223477889999886 234699
Q ss_pred EEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHH----HHHcC--CeEEEEcCccee
Q 024766 183 QIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGL----AKRVG--AKFLLTSTSEVY 234 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~----a~~~~--~~iV~vSS~~vy 234 (263)
++|||||....... .+...+.+.+|+.+..+++.. +.+.+ .+||++||...+
T Consensus 80 ~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~ 141 (246)
T PRK05599 80 LAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGW 141 (246)
T ss_pred EEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccc
Confidence 99999997543221 122456678999998876554 33332 489999997543
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=116.43 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=82.5
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc---------CCCcEEEEcc
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL---------LEVDQIYHLA 188 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~---------~~iD~Vi~~A 188 (263)
+++||||+|+||++++++|+++|++|++++|+.++..+...+ ..+..+.+|+.++.. ..+|++||||
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~a 77 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKE----LDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVP 77 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----ccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECC
Confidence 699999999999999999999999999999865433222211 135678899987621 2589999999
Q ss_pred CCCCC---C---C---CCCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcc
Q 024766 189 CPASP---V---H---YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSE 232 (263)
Q Consensus 189 g~~~~---~---~---~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~ 232 (263)
|.... . . ..+++++.+++|+.|+.++++++... +.+||++||.+
T Consensus 78 g~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~ 133 (223)
T PRK05884 78 APSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN 133 (223)
T ss_pred CccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC
Confidence 85211 1 1 12357788999999999999987542 34899999864
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.9e-13 Score=115.45 Aligned_cols=117 Identities=16% Similarity=0.126 Sum_probs=87.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCcE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQ 183 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD~ 183 (263)
+|+++||||+|+||.+++++|+++|++|++++|+.....+..... ...++..+.+|+.+.. +.++|+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~ 80 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL-GDARFVPVACDLTDAASLAAALANAAAERGPVDV 80 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 578999999999999999999999999999998765443333222 3456888899997762 135899
Q ss_pred EEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcce
Q 024766 184 IYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEV 233 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~v 233 (263)
||||||........+ .+...+.+|+.|+.++++++. +.+. +||++||...
T Consensus 81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~ 139 (257)
T PRK07074 81 LVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVNG 139 (257)
T ss_pred EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchhh
Confidence 999999754333222 235567899999999988873 3333 8999999643
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.6e-14 Score=118.92 Aligned_cols=148 Identities=27% Similarity=0.317 Sum_probs=121.1
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhh-hhhhc------CCCceEEEEccccccc------
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN-LVHHF------RNPRFELIRHDVVEPI------ 177 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~-~~~~~------~~~~v~~~~~Dv~~~~------ 177 (263)
+.....|.+||||-||.-|+.|++.|+..|++|..+.|+....... +.++. ....+.+..+|++|..
T Consensus 23 ~~~r~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I 102 (376)
T KOG1372|consen 23 GAFRPRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLI 102 (376)
T ss_pred cCcccceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHH
Confidence 3345567899999999999999999999999999998876554332 22322 2346788889999873
Q ss_pred -cCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC----CeEEEEcCcceecCCCCCCcCCCCCCCCCC
Q 024766 178 -LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG----AKFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~----~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p 252 (263)
..+++-|+|.|+..+.....+-++-+-++...|+++++++.+.++ ++|-..||+..||.....|+.|+ +|
T Consensus 103 ~~ikPtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~-----TP 177 (376)
T KOG1372|consen 103 STIKPTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSET-----TP 177 (376)
T ss_pred hccCchhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccC-----CC
Confidence 246899999998777655556677777899999999999998876 38889999999999999999999 69
Q ss_pred CCcCccccccC
Q 024766 253 IGELLAATAVV 263 (263)
Q Consensus 253 ~~~~~~Y~~sK 263 (263)
+.|++.|+++|
T Consensus 178 FyPRSPYa~aK 188 (376)
T KOG1372|consen 178 FYPRSPYAAAK 188 (376)
T ss_pred CCCCChhHHhh
Confidence 99999999987
|
|
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6e-13 Score=114.03 Aligned_cols=113 Identities=19% Similarity=0.146 Sum_probs=85.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----c------CCCcE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----L------LEVDQ 183 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~------~~iD~ 183 (263)
.+|+++||||+|+||.+++++|+++|++|++++|..... ...+++.+|+.+.. + .++|+
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~ 71 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD----------FPGELFACDLADIEQTAATLAQINEIHPVDA 71 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc----------cCceEEEeeCCCHHHHHHHHHHHHHhCCCcE
Confidence 467999999999999999999999999999999875431 01246778887752 1 25899
Q ss_pred EEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceecCC
Q 024766 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYGDP 237 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg~~ 237 (263)
||||||......+. +++...+++|+.|+.++.+++. +.+. +||++||.+.|+.+
T Consensus 72 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~ 134 (234)
T PRK07577 72 IVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFGAL 134 (234)
T ss_pred EEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccCCC
Confidence 99999975543322 2456789999999988877653 3443 89999998877643
|
|
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-13 Score=142.58 Aligned_cols=146 Identities=22% Similarity=0.220 Sum_probs=103.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCC----CeEEEEecCCccchh--hhhhhc---------CCCceEEEEccccccc--
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRG----DEVIVIDNFFTGRKD--NLVHHF---------RNPRFELIRHDVVEPI-- 177 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G----~~V~~l~r~~~~~~~--~~~~~~---------~~~~v~~~~~Dv~~~~-- 177 (263)
..++|+||||+||||.+++++|++++ .+|+++.|....... .+.... ...++.++.+|+.++.
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence 35799999999999999999999987 689999886433211 111100 0236889999997653
Q ss_pred ---------cCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCC---------
Q 024766 178 ---------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPL--------- 238 (263)
Q Consensus 178 ---------~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~--------- 238 (263)
..++|+|||||+... +..........|+.|+.+++++|++.+. +++++||.++|+...
T Consensus 1050 l~~~~~~~l~~~~d~iiH~Aa~~~---~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~ 1126 (1389)
T TIGR03443 1050 LSDEKWSDLTNEVDVIIHNGALVH---WVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELV 1126 (1389)
T ss_pred cCHHHHHHHHhcCCEEEECCcEec---CccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhh
Confidence 246999999997543 3345555667899999999999988775 899999999997421
Q ss_pred ---CCCcCCCCCCCCCCCCcCccccccC
Q 024766 239 ---EHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 239 ---~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
...+.|..+....+....+.|+.||
T Consensus 1127 ~~~~~~~~e~~~~~~~~~~~~~~Y~~sK 1154 (1389)
T TIGR03443 1127 QAGGAGIPESDDLMGSSKGLGTGYGQSK 1154 (1389)
T ss_pred hccCCCCCcccccccccccCCCChHHHH
Confidence 1234455433333445567899887
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-13 Score=114.23 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=85.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------c--CCCcEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------L--LEVDQIY 185 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~--------~--~~iD~Vi 185 (263)
||+++||||+|+||++++++|+++|++|++++|+.+...+ +. ...++++.+|+.+.. + ..+|+||
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~-~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi 75 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAA-LQ----ALGAEALALDVADPASVAGLAWKLDGEALDAAV 75 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHH-HH----hccceEEEecCCCHHHHHHHHHHhcCCCCCEEE
Confidence 4689999999999999999999999999999987543322 11 123567889987752 1 2489999
Q ss_pred EccCCCCCC--C----CCCCHHHHHHHHHHHHHHHHHHHHHc----CCeEEEEcCc-ceec
Q 024766 186 HLACPASPV--H----YKYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTS-EVYG 235 (263)
Q Consensus 186 ~~Ag~~~~~--~----~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~iV~vSS~-~vyg 235 (263)
||+|..... . ..++++..+++|+.++.++++++.+. +.++|++||. ++++
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~ 136 (222)
T PRK06953 76 YVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIG 136 (222)
T ss_pred ECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccc
Confidence 999975321 1 22346788999999999999988642 2379999885 4565
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-13 Score=124.72 Aligned_cols=117 Identities=20% Similarity=0.290 Sum_probs=88.7
Q ss_pred CCCCEEEEE----cCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhh------hhcCCCceEEEEcccccc--cc--C
Q 024766 114 RRRLRIVVT----GGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV------HHFRNPRFELIRHDVVEP--IL--L 179 (263)
Q Consensus 114 ~~~k~vlVT----GatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~------~~~~~~~v~~~~~Dv~~~--~~--~ 179 (263)
..+++|+|| |||||||++|+++|+++|++|++++|.......... ..+....++++.+|+.|. .+ .
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~ 129 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGA 129 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccC
Confidence 345789999 999999999999999999999999997653211100 011123478888998762 22 3
Q ss_pred CCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCC
Q 024766 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETY 246 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~ 246 (263)
++|+|||+++. ++.++.+++++|++.|+ +||++||.++||.....+..|.+
T Consensus 130 ~~d~Vi~~~~~----------------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~~ 181 (378)
T PLN00016 130 GFDVVYDNNGK----------------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEGD 181 (378)
T ss_pred CccEEEeCCCC----------------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCCC
Confidence 69999999752 13467899999999987 99999999999977666777774
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.4e-13 Score=108.60 Aligned_cols=119 Identities=19% Similarity=0.223 Sum_probs=86.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhh---hhh-cCCCceEEEEccccccc------------cC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNL---VHH-FRNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~---~~~-~~~~~v~~~~~Dv~~~~------------~~ 179 (263)
++++||||+|+||.+++++|+++|. .|+++.|+........ ... ....++..+.+|+.++. +.
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG 80 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999997 6777777654332211 111 12456778889997651 24
Q ss_pred CCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcc-eec
Q 024766 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSE-VYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~-vyg 235 (263)
.+|.|||+||....... .++++..+++|+.++.++++++++.+. ++|++||.. .++
T Consensus 81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~ 142 (180)
T smart00822 81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLG 142 (180)
T ss_pred CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcC
Confidence 47999999986543222 234678899999999999999977664 899998854 444
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.4e-13 Score=126.50 Aligned_cols=120 Identities=17% Similarity=0.136 Sum_probs=87.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++++++||||+|+||.+++++|+++|++|+++++.... +.+.+.........+.+|+++.. ...
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~--~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 284 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAG--EALAAVANRVGGTALALDITAPDAPARIAEHLAERHGG 284 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccH--HHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCC
Confidence 4578999999999999999999999999999999874322 12222111123456788887752 236
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc-----CCeEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV-----GAKFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~-----~~~iV~vSS~~vy 234 (263)
+|+||||||....... .+.++..+++|+.|+.++++++... +.+||++||.+.+
T Consensus 285 id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~ 347 (450)
T PRK08261 285 LDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGI 347 (450)
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhc
Confidence 9999999997543322 2346778999999999999998653 2489999996543
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.1e-13 Score=113.94 Aligned_cols=118 Identities=19% Similarity=0.160 Sum_probs=86.4
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhh-hhhc-CCCceEEEEccccccc------------cCCCcEE
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL-VHHF-RNPRFELIRHDVVEPI------------LLEVDQI 184 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~-~~~~-~~~~v~~~~~Dv~~~~------------~~~iD~V 184 (263)
++|||++|+||++++++|+++|++|++++|+.....+.. .... ...++.++.+|+++.. +..+|+|
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v 80 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDIL 80 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence 589999999999999999999999999988753222222 1111 2345788999998763 2358999
Q ss_pred EEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCc-ceecC
Q 024766 185 YHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTS-EVYGD 236 (263)
Q Consensus 185 i~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~-~vyg~ 236 (263)
||+||....... .+.+++.+++|+.++.++++.+.+ .+ .+||++||. ++||.
T Consensus 81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g~ 142 (239)
T TIGR01830 81 VNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMGN 142 (239)
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCCC
Confidence 999997543221 234678899999999999998754 23 389999995 56663
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.5e-13 Score=109.19 Aligned_cols=101 Identities=34% Similarity=0.572 Sum_probs=85.6
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCCCCC
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPASP 193 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~~~~ 193 (263)
|+|+||||++|+.++++|+++|++|+++.|+.++..+ ..+++.+.+|+.|+ .+.++|+||+++|....
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-------ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 7899999999999999999999999999998665443 56899999999886 45689999999964322
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCC
Q 024766 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLE 239 (263)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~ 239 (263)
+...+.++++++++.+. ++|++||.++|+....
T Consensus 74 -------------~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~ 107 (183)
T PF13460_consen 74 -------------DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPG 107 (183)
T ss_dssp -------------HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTS
T ss_pred -------------cccccccccccccccccccceeeeccccCCCCCc
Confidence 27788899999999987 9999999999985544
|
... |
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-13 Score=131.94 Aligned_cols=111 Identities=28% Similarity=0.393 Sum_probs=85.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc----cCCCcEEEEccCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI----LLEVDQIYHLACPAS 192 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~----~~~iD~Vi~~Ag~~~ 192 (263)
|+|+||||+||||++|+++|+++|++|++++|..... ....++++.+|+.++. +.++|+|||+|+...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~--------~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~~ 72 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA--------LDPRVDYVCASLRNPVLQELAGEADAVIHLAPVDT 72 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc--------ccCCceEEEccCCCHHHHHHhcCCCEEEEcCccCc
Confidence 4799999999999999999999999999999753321 1246788999998864 357999999997521
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCC
Q 024766 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKET 245 (263)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~ 245 (263)
. . ...+|+.|+.|++++|++.++++|++||. ||.+...+..|.
T Consensus 73 ~-----~---~~~vNv~Gt~nLleAA~~~GvRiV~~SS~--~G~~~~~~~aE~ 115 (699)
T PRK12320 73 S-----A---PGGVGITGLAHVANAAARAGARLLFVSQA--AGRPELYRQAET 115 (699)
T ss_pred c-----c---hhhHHHHHHHHHHHHHHHcCCeEEEEECC--CCCCccccHHHH
Confidence 1 1 12589999999999999999899999986 454332333443
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-13 Score=117.60 Aligned_cols=117 Identities=12% Similarity=0.026 Sum_probs=84.1
Q ss_pred EEEEEcCCChHHHHHHHHHHh----CCCeEEEEecCCccchhhhhhhc---CCCceEEEEcccccccc------------
Q 024766 118 RIVVTGGAGFVGSHLVDKLID----RGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPIL------------ 178 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~----~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~~------------ 178 (263)
.++||||+++||.+++++|++ .|++|++++|+.+...+...++. ....+.++.+|+.+...
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP 81 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence 689999999999999999997 79999999997655444333322 23467889999987521
Q ss_pred C----CCcEEEEccCCCCCC--CC-----CCCHHHHHHHHHHHHHHHHHHHHH----c-C--CeEEEEcCccee
Q 024766 179 L----EVDQIYHLACPASPV--HY-----KYNPVKTIKTNVMGTLNMLGLAKR----V-G--AKFLLTSTSEVY 234 (263)
Q Consensus 179 ~----~iD~Vi~~Ag~~~~~--~~-----~~~~~~~~~~Nv~gt~~ll~~a~~----~-~--~~iV~vSS~~vy 234 (263)
. +.|+||||||..... .. .+++++.+++|+.|+..+.+.+.+ . + .+||++||.+.+
T Consensus 82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~ 155 (256)
T TIGR01500 82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAI 155 (256)
T ss_pred ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhC
Confidence 1 136999999964321 11 134578899999999888776532 2 2 389999997654
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.3e-13 Score=114.77 Aligned_cols=122 Identities=17% Similarity=0.163 Sum_probs=89.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc-chhhhhhhc--CC-CceEEEEccccc-c-----------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG-RKDNLVHHF--RN-PRFELIRHDVVE-P----------- 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~-~~~~~~~~~--~~-~~v~~~~~Dv~~-~----------- 176 (263)
.+.+|+++||||+++||++++++|+++|+.|+++.++... ..+...... .. ..+....+|+++ .
T Consensus 2 ~~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~ 81 (251)
T COG1028 2 DLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAE 81 (251)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHH
Confidence 3578899999999999999999999999998888877554 122221111 11 357777899987 4
Q ss_pred -ccCCCcEEEEccCCCCCC-CC----CCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcCccee
Q 024766 177 -ILLEVDQIYHLACPASPV-HY----KYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVY 234 (263)
Q Consensus 177 -~~~~iD~Vi~~Ag~~~~~-~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS~~vy 234 (263)
.+..+|++|||||..... .. .+.+++.+++|+.|...+.+++..... +||++||....
T Consensus 82 ~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~ 147 (251)
T COG1028 82 EEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL 147 (251)
T ss_pred HHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc
Confidence 234599999999975431 21 235788899999999998886544444 99999998654
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.7e-13 Score=110.78 Aligned_cols=100 Identities=24% Similarity=0.357 Sum_probs=76.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------cCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~--------~~~iD~Vi~~A 188 (263)
|+++||||+|+||++++++|+++ ++|++++|+.. .+.+|+.++. +.++|+|||||
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~id~lv~~a 63 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG----------------DVQVDITDPASIRALFEKVGKVDAVVSAA 63 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC----------------ceEecCCChHHHHHHHHhcCCCCEEEECC
Confidence 47999999999999999999999 99999987532 2456766542 24799999999
Q ss_pred CCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 189 CPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 189 g~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
|....... .+++.+.+++|+.|+.++++++.+. +.+|+++||...
T Consensus 64 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~ 115 (199)
T PRK07578 64 GKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILS 115 (199)
T ss_pred CCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEccccc
Confidence 97543322 2246677899999999999987643 248999998653
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.8e-13 Score=112.75 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=88.0
Q ss_pred CCCEEEEEcC-CChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-------------ccCC
Q 024766 115 RRLRIVVTGG-AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-------------ILLE 180 (263)
Q Consensus 115 ~~k~vlVTGa-tG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-------------~~~~ 180 (263)
..|.|+|||+ .|+||.+|+++|.+.|+.|++..|+.+...+...+ ..+.....|+.++ ..+.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~----~gl~~~kLDV~~~~~V~~v~~evr~~~~Gk 81 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ----FGLKPYKLDVSKPEEVVTVSGEVRANPDGK 81 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh----hCCeeEEeccCChHHHHHHHHHHhhCCCCc
Confidence 4468888876 79999999999999999999999876654433322 2477788888776 2345
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vyg 235 (263)
+|++|||||..-.....+ ..++.|++|+.|..++.++... ....||++.|..+|-
T Consensus 82 ld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~v 144 (289)
T KOG1209|consen 82 LDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVV 144 (289)
T ss_pred eEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEe
Confidence 999999999654333222 3578899999999999888653 234899999987774
|
|
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=118.06 Aligned_cols=120 Identities=13% Similarity=0.101 Sum_probs=81.7
Q ss_pred cCCCCEEEEEcC--CChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-----------CC---CceEEEEcccc--
Q 024766 113 GRRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-----------RN---PRFELIRHDVV-- 174 (263)
Q Consensus 113 ~~~~k~vlVTGa--tG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-----------~~---~~v~~~~~Dv~-- 174 (263)
.++||+++|||| +++||.++++.|++.|++|++ .|.....++...... .. .....+.+|+.
T Consensus 6 ~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 84 (303)
T PLN02730 6 DLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFD 84 (303)
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecC
Confidence 478999999999 799999999999999999988 554333322211110 00 11245566661
Q ss_pred ------c--------------c----------ccCCCcEEEEccCCCCC--CCC----CCCHHHHHHHHHHHHHHHHHHH
Q 024766 175 ------E--------------P----------ILLEVDQIYHLACPASP--VHY----KYNPVKTIKTNVMGTLNMLGLA 218 (263)
Q Consensus 175 ------~--------------~----------~~~~iD~Vi~~Ag~~~~--~~~----~~~~~~~~~~Nv~gt~~ll~~a 218 (263)
+ . .+..+|++|||||.... ..+ .+++++.+++|+.|+.++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~ 164 (303)
T PLN02730 85 TPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHF 164 (303)
T ss_pred ccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 1 0 23469999999975321 121 2357888999999999998886
Q ss_pred HHc---CCeEEEEcCcce
Q 024766 219 KRV---GAKFLLTSTSEV 233 (263)
Q Consensus 219 ~~~---~~~iV~vSS~~v 233 (263)
... +.+||++||...
T Consensus 165 ~p~m~~~G~II~isS~a~ 182 (303)
T PLN02730 165 GPIMNPGGASISLTYIAS 182 (303)
T ss_pred HHHHhcCCEEEEEechhh
Confidence 543 249999999654
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.1e-13 Score=113.07 Aligned_cols=112 Identities=20% Similarity=0.240 Sum_probs=82.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------c--CCCcEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------L--LEVDQIY 185 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~--------~--~~iD~Vi 185 (263)
+|+++||||+|+||++++++|+++|++|++++|+.+...+ +.. ..++....+|+.|.. + .++|+||
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~-~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi 76 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTA-LQA---LPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLF 76 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHH-HHh---ccccceEEcCCCCHHHHHHHHHHhhcCCCCEEE
Confidence 4689999999999999999999999999999998655332 222 235667778887752 1 2599999
Q ss_pred EccCCCCCCC--C----CCCHHHHHHHHHHHHHHHHHHHHHc---C-CeEEEEcCc
Q 024766 186 HLACPASPVH--Y----KYNPVKTIKTNVMGTLNMLGLAKRV---G-AKFLLTSTS 231 (263)
Q Consensus 186 ~~Ag~~~~~~--~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~-~~iV~vSS~ 231 (263)
||||...... . .+++...+.+|+.++.++++.+... + ..++++||.
T Consensus 77 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~ 132 (225)
T PRK08177 77 VNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQ 132 (225)
T ss_pred EcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccC
Confidence 9999753321 1 1235677899999999998887543 2 478888875
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-12 Score=120.51 Aligned_cols=133 Identities=25% Similarity=0.282 Sum_probs=100.2
Q ss_pred ccccCCCCEEEEEcCCChHHHHHHHHHHhCCC---eEEEEecCCccch--hhhhhh-----c---------CCCceEEEE
Q 024766 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRK--DNLVHH-----F---------RNPRFELIR 170 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~---~V~~l~r~~~~~~--~~~~~~-----~---------~~~~v~~~~ 170 (263)
....+++|+|+|||||||+|+.++++|++... +++++.|...+.. +.+... + ...++..+.
T Consensus 6 i~~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~ 85 (467)
T KOG1221|consen 6 IVQFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIA 85 (467)
T ss_pred HHHHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecc
Confidence 34568999999999999999999999999754 6677777544331 111111 0 124677888
Q ss_pred ccccccc-----------cCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcCcceecCC
Q 024766 171 HDVVEPI-----------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDP 237 (263)
Q Consensus 171 ~Dv~~~~-----------~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS~~vyg~~ 237 (263)
+|+.++. ..++|+|||+| +.+++.+..+....+|+.||.+++++|++... -+|++||+.+..
T Consensus 86 GDi~~~~LGis~~D~~~l~~eV~ivih~A---AtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~-- 160 (467)
T KOG1221|consen 86 GDISEPDLGISESDLRTLADEVNIVIHSA---ATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNC-- 160 (467)
T ss_pred ccccCcccCCChHHHHHHHhcCCEEEEee---eeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheec--
Confidence 8987763 34699999999 56788888899999999999999999999875 799999997773
Q ss_pred CCCCcCCCCC
Q 024766 238 LEHPQKETYW 247 (263)
Q Consensus 238 ~~~~~~E~~~ 247 (263)
...-..|..+
T Consensus 161 ~~~~i~E~~y 170 (467)
T KOG1221|consen 161 NVGHIEEKPY 170 (467)
T ss_pred cccccccccc
Confidence 3334555543
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.7e-12 Score=127.56 Aligned_cols=99 Identities=26% Similarity=0.419 Sum_probs=81.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 191 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~~ 191 (263)
|+|+||||+||||++++++|+++|++|++++|+.... ....+.++.+|+.|. .+.++|+|||||+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~--------~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS--------WPSSADFIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh--------cccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 4799999999999999999999999999999864321 012567888998875 346799999999753
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcc
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSE 232 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~ 232 (263)
.. .+++|+.|+.++++++++.+. +||++||.+
T Consensus 73 ~~---------~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~ 105 (854)
T PRK05865 73 GR---------NDHINIDGTANVLKAMAETGTGRIVFTSSGH 105 (854)
T ss_pred cc---------hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH
Confidence 21 468999999999999999886 999999963
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.5e-12 Score=107.47 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=77.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------cCCCcEEEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEVDQIYH 186 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~--------~~~iD~Vi~ 186 (263)
|+++||||+|+||++++++|+++| ..|+..+|.... + ....++.++.+|+++.. +.++|+|||
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~--~-----~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~ 73 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKP--D-----FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLIN 73 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCcc--c-----cccCceEEEEecCCCHHHHHHHHHhcCCCCEEEE
Confidence 489999999999999999999986 455555553221 1 12456788899998752 357999999
Q ss_pred ccCCCCCCC------CC----CCHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEEcCc
Q 024766 187 LACPASPVH------YK----YNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTS 231 (263)
Q Consensus 187 ~Ag~~~~~~------~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~-~~iV~vSS~ 231 (263)
|||...... .+ +.+...+.+|+.++..+++.+... + .+++++||.
T Consensus 74 ~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~ 133 (235)
T PRK09009 74 CVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAK 133 (235)
T ss_pred CCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeec
Confidence 999754211 11 124577899999999888876442 2 388999873
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=4e-13 Score=109.36 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=93.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc--------CCCcE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL--------LEVDQ 183 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~--------~~iD~ 183 (263)
..+.|+.|++||+.-+||++++..|++.|++|+++.|.+......+.+ ....++.+.+|+.+.+. .-+|.
T Consensus 3 t~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e--~p~~I~Pi~~Dls~wea~~~~l~~v~pidg 80 (245)
T KOG1207|consen 3 TSLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKE--TPSLIIPIVGDLSAWEALFKLLVPVFPIDG 80 (245)
T ss_pred ccccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhh--CCcceeeeEecccHHHHHHHhhcccCchhh
Confidence 356889999999999999999999999999999999876554443332 23458889999977522 13899
Q ss_pred EEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cCC--eEEEEcCcceec
Q 024766 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA--KFLLTSTSEVYG 235 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~--~iV~vSS~~vyg 235 (263)
++||||+.....+. +..++.|++|+.+..++.+...+ .++ .||++||.+..-
T Consensus 81 LVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R 142 (245)
T KOG1207|consen 81 LVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIR 142 (245)
T ss_pred hhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhccc
Confidence 99999987665544 35678899999999998887433 232 799999975543
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.9e-12 Score=110.00 Aligned_cols=122 Identities=18% Similarity=0.251 Sum_probs=89.4
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccC-CCcEEEEccCCCCCCC-C
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL-EVDQIYHLACPASPVH-Y 196 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~-~iD~Vi~~Ag~~~~~~-~ 196 (263)
|+||||||+||++|+.+|.+.|++|+++.|+..+....... .+. ..|-.+.... ++|+|||.||..-..+ +
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~-----~v~--~~~~~~~~~~~~~DavINLAG~~I~~rrW 73 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHP-----NVT--LWEGLADALTLGIDAVINLAGEPIAERRW 73 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCc-----ccc--ccchhhhcccCCCCEEEECCCCccccccC
Confidence 68999999999999999999999999999987665443321 122 2222222222 7999999999654433 2
Q ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHcC--C-eEEEEcCcceecCCCCCCcCCCCC
Q 024766 197 KY-NPVKTIKTNVMGTLNMLGLAKRVG--A-KFLLTSTSEVYGDPLEHPQKETYW 247 (263)
Q Consensus 197 ~~-~~~~~~~~Nv~gt~~ll~~a~~~~--~-~iV~vSS~~vyg~~~~~~~~E~~~ 247 (263)
.. ..+..++.-+..|..+.++..+.. . .+|.-|.++.||+..+..++|+++
T Consensus 74 t~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~ 128 (297)
T COG1090 74 TEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESP 128 (297)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCC
Confidence 22 245667889999999999987554 3 466666688999999999999953
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.2e-12 Score=106.52 Aligned_cols=120 Identities=22% Similarity=0.266 Sum_probs=91.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~i 181 (263)
.++...+||||.+++|++.+++|+++|+.|++++...++-.+...++ ..++.+...|++.+ .+..+
T Consensus 7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakel--g~~~vf~padvtsekdv~aala~ak~kfgrl 84 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKEL--GGKVVFTPADVTSEKDVRAALAKAKAKFGRL 84 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHh--CCceEEeccccCcHHHHHHHHHHHHhhccce
Confidence 35668999999999999999999999999999998665544444443 56788899999765 45679
Q ss_pred cEEEEccCCCCCCC----------CCCCHHHHHHHHHHHHHHHHHHHHH---------cCC--eEEEEcCcceec
Q 024766 182 DQIYHLACPASPVH----------YKYNPVKTIKTNVMGTLNMLGLAKR---------VGA--KFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~----------~~~~~~~~~~~Nv~gt~~ll~~a~~---------~~~--~iV~vSS~~vyg 235 (263)
|..+||||+..... ..++..+.+++|+.||+|+++.... .|. -||++.|.+.|.
T Consensus 85 d~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafd 159 (260)
T KOG1199|consen 85 DALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFD 159 (260)
T ss_pred eeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeec
Confidence 99999999754321 1235677789999999999987421 122 477788877775
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.4e-11 Score=106.50 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=90.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc--------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL-------------- 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~-------------- 178 (263)
...+|.|+|||+.++.|..|+++|.++|..|.+-+..+++. +.+....+.++...+..|++++..
T Consensus 26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~ga-e~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~ 104 (322)
T KOG1610|consen 26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGA-ESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGE 104 (322)
T ss_pred ccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchH-HHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhccc
Confidence 34567899999999999999999999999999988544443 333333347788889999998732
Q ss_pred CCCcEEEEccCCCCCCC-C----CCCHHHHHHHHHHHHHHHHHH----HHHcCCeEEEEcCcce
Q 024766 179 LEVDQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGL----AKRVGAKFLLTSTSEV 233 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~----a~~~~~~iV~vSS~~v 233 (263)
.+.=.||||||+..... . .+++...+++|+.|+..+..+ .++...|||++||..-
T Consensus 105 ~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~arGRvVnvsS~~G 168 (322)
T KOG1610|consen 105 DGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRARGRVVNVSSVLG 168 (322)
T ss_pred ccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhccCeEEEeccccc
Confidence 23789999999654322 2 235788899999997776665 4666679999999754
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.2e-11 Score=107.57 Aligned_cols=119 Identities=20% Similarity=0.237 Sum_probs=90.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEcccccc------------ccCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEP------------ILLEV 181 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~------------~~~~i 181 (263)
.+++||||+.+||..++.++..+|++|.++.|+.++..+...++- ....+.+..+|+.|- ....+
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~ 113 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI 113 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence 489999999999999999999999999999998777666554442 223467888888442 12348
Q ss_pred cEEEEccCCCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHHc----C--CeEEEEcCc-ceec
Q 024766 182 DQIYHLACPASPVHYKYN----PVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTS-EVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~~~----~~~~~~~Nv~gt~~ll~~a~~~----~--~~iV~vSS~-~vyg 235 (263)
|.+|||||..-+..+++. .+..+++|..|+.|+++++... . .+|+++||. +.+|
T Consensus 114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~ 178 (331)
T KOG1210|consen 114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLG 178 (331)
T ss_pred ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcC
Confidence 999999998776666554 4677899999999999886432 2 189999885 4443
|
|
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-11 Score=110.03 Aligned_cols=122 Identities=11% Similarity=0.045 Sum_probs=77.8
Q ss_pred ccCCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCC------ccc-hhhhh--------------hh----cCCC
Q 024766 112 IGRRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFF------TGR-KDNLV--------------HH----FRNP 164 (263)
Q Consensus 112 ~~~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~------~~~-~~~~~--------------~~----~~~~ 164 (263)
..+++|+++||||+ .+||+++++.|+++|++|++.++.+ +.. .+... +. ....
T Consensus 4 ~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~ 83 (299)
T PRK06300 4 IDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFD 83 (299)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcC
Confidence 45689999999995 9999999999999999999976431 000 00000 00 0001
Q ss_pred ceEEEEccccc--------------------cccCCCcEEEEccCCCC--CCCC----CCCHHHHHHHHHHHHHHHHHHH
Q 024766 165 RFELIRHDVVE--------------------PILLEVDQIYHLACPAS--PVHY----KYNPVKTIKTNVMGTLNMLGLA 218 (263)
Q Consensus 165 ~v~~~~~Dv~~--------------------~~~~~iD~Vi~~Ag~~~--~~~~----~~~~~~~~~~Nv~gt~~ll~~a 218 (263)
..+-+.+|+.+ ..+..+|++|||||... ...+ .+++++.+++|+.|+.++++++
T Consensus 84 ~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~ 163 (299)
T PRK06300 84 TPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHF 163 (299)
T ss_pred CCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 11222222211 12356999999998632 1222 2346788999999999999987
Q ss_pred HHc---CCeEEEEcCcce
Q 024766 219 KRV---GAKFLLTSTSEV 233 (263)
Q Consensus 219 ~~~---~~~iV~vSS~~v 233 (263)
... +.+||++||...
T Consensus 164 ~p~m~~~G~ii~iss~~~ 181 (299)
T PRK06300 164 GPIMNPGGSTISLTYLAS 181 (299)
T ss_pred HHHhhcCCeEEEEeehhh
Confidence 543 248999988544
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.5e-11 Score=131.75 Aligned_cols=123 Identities=21% Similarity=0.162 Sum_probs=91.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccc----------------------------------------
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGR---------------------------------------- 153 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~---------------------------------------- 153 (263)
++++++||||+++||.+++++|+++ |++|++++|+....
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 6789999999999999999999998 68999999872100
Q ss_pred ----h---hhhhhhc-CCCceEEEEccccccc-----------cCCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHH
Q 024766 154 ----K---DNLVHHF-RNPRFELIRHDVVEPI-----------LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMG 210 (263)
Q Consensus 154 ----~---~~~~~~~-~~~~v~~~~~Dv~~~~-----------~~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~g 210 (263)
. +.+..+. .+..+.++.+|++|.. ...+|.||||||+...... .+++++.+++|+.|
T Consensus 2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence 0 0001110 2346788999998862 1259999999997654332 23577889999999
Q ss_pred HHHHHHHHHHcC-CeEEEEcCcc-eecCC
Q 024766 211 TLNMLGLAKRVG-AKFLLTSTSE-VYGDP 237 (263)
Q Consensus 211 t~~ll~~a~~~~-~~iV~vSS~~-vyg~~ 237 (263)
+.++++++.... .+||++||.. .||.+
T Consensus 2156 ~~~Ll~al~~~~~~~IV~~SSvag~~G~~ 2184 (2582)
T TIGR02813 2156 LLSLLAALNAENIKLLALFSSAAGFYGNT 2184 (2582)
T ss_pred HHHHHHHHHHhCCCeEEEEechhhcCCCC
Confidence 999999987765 3899999964 56643
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-11 Score=98.96 Aligned_cols=122 Identities=21% Similarity=0.281 Sum_probs=81.5
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc---hhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR---KDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~---~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++||||+|+||..+++.|+++|. +|+++.|+.... .+.+.+.. ...++.++.+|++|+. ...
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~ 81 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP 81 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence 689999999999999999999987 889999883222 12222222 3668999999998862 235
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCc-ceecCCCC
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTS-EVYGDPLE 239 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~-~vyg~~~~ 239 (263)
+|.|||+||........+ ..+..+...+.|+.++.++...... .+|+.||+ +++|.+..
T Consensus 82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~~gq 146 (181)
T PF08659_consen 82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGGPGQ 146 (181)
T ss_dssp EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT-TTB
T ss_pred cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccCcch
Confidence 899999999765433322 3567789999999999999987666 78888885 56776543
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-10 Score=95.22 Aligned_cols=121 Identities=13% Similarity=0.048 Sum_probs=80.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------ccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~~ 179 (263)
.+++|+++||||+|+||.++++.|++.|++|++++|+.+...+...+.. ....+.++.+|+.+. .+.
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999999999999987554332222221 234567788998764 235
Q ss_pred CCcEEEEccCCCCCCC-CCC-CHHHHHHHHHHHHHHHHHHH----HHcC--------CeEEEEcCcce
Q 024766 180 EVDQIYHLACPASPVH-YKY-NPVKTIKTNVMGTLNMLGLA----KRVG--------AKFLLTSTSEV 233 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~-~~~-~~~~~~~~Nv~gt~~ll~~a----~~~~--------~~iV~vSS~~v 233 (263)
++|++|||||...... +.+ ..+..-.+|+.++......+ .+.+ .||..|||.++
T Consensus 93 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (169)
T PRK06720 93 RIDMLFQNAGLYKIDSIFSRQQENDSNVLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFGIIGTKGQ 160 (169)
T ss_pred CCCEEEECCCcCCCCCcccccchhHhhceeccHHHHHHHHHHHHHHhcCCEEEeecCceeeEeccccc
Confidence 6999999999755333 222 22222355566555444443 2222 27888888654
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-11 Score=107.96 Aligned_cols=118 Identities=17% Similarity=0.138 Sum_probs=88.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC--CCceEEEEccccccc---------c--CCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR--NPRFELIRHDVVEPI---------L--LEVD 182 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~Dv~~~~---------~--~~iD 182 (263)
|+-++|||||.+||++.+++|+++|.+|+++.|+.++......++.+ ..++..+..|.++.. + .++-
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~Vg 128 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVG 128 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceE
Confidence 46899999999999999999999999999999998887766555543 356777888887653 1 2478
Q ss_pred EEEEccCCCC--CCCCCCCH----HHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcce
Q 024766 183 QIYHLACPAS--PVHYKYNP----VKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEV 233 (263)
Q Consensus 183 ~Vi~~Ag~~~--~~~~~~~~----~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~v 233 (263)
++|||+|... +..+.+.+ ...+.+|+.++..+.+... +.+. -||++||.+-
T Consensus 129 ILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag 190 (312)
T KOG1014|consen 129 ILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAG 190 (312)
T ss_pred EEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccc
Confidence 9999999765 33333322 4557899999887777643 3333 8999999643
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.3e-11 Score=105.23 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=84.8
Q ss_pred cCC--ChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------cc-CCCcEEEEc
Q 024766 123 GGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------IL-LEVDQIYHL 187 (263)
Q Consensus 123 Gat--G~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~-~~iD~Vi~~ 187 (263)
|++ ++||.+++++|+++|++|++++|+.++..+.+.+.......+++.+|+.++ .+ ..+|++|||
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~ 80 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNN 80 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEec
Confidence 566 999999999999999999999998776544444443322344699999776 35 779999999
Q ss_pred cCCCCC----CCCC----CCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 188 ACPASP----VHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 188 Ag~~~~----~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
+|.... ..+. +++...+++|+.++..+++.+.+. +.+||++||.+...
T Consensus 81 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~ 139 (241)
T PF13561_consen 81 AGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR 139 (241)
T ss_dssp EESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS
T ss_pred ccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc
Confidence 987654 2222 246788999999999999987543 34899999875543
|
... |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-10 Score=99.81 Aligned_cols=96 Identities=20% Similarity=0.333 Sum_probs=71.9
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----cc------CC-CcEEE
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL------LE-VDQIY 185 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~------~~-iD~Vi 185 (263)
+|+||||||+||++++++|+++|++|+++.|+.++.. ...++.+.+|..|+ .+ .+ +|.|+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~--------~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~ 72 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA--------GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVY 72 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc--------CCCCccccccCCCHHHHHHHHhcccCcCCceeEEE
Confidence 4899999999999999999999999999999865432 12344556677664 23 45 99999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCccee
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vy 234 (263)
|+++... +. ...+.+++++|++.|+ +||++||..++
T Consensus 73 ~~~~~~~------~~-------~~~~~~~i~aa~~~gv~~~V~~Ss~~~~ 109 (285)
T TIGR03649 73 LVAPPIP------DL-------APPMIKFIDFARSKGVRRFVLLSASIIE 109 (285)
T ss_pred EeCCCCC------Ch-------hHHHHHHHHHHHHcCCCEEEEeeccccC
Confidence 9985321 11 1234688999999997 99999997654
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=6.4e-10 Score=94.23 Aligned_cols=117 Identities=21% Similarity=0.210 Sum_probs=81.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecC-Cccchhhhhhh-cCCCceEEEEccccccc--------------c
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNF-FTGRKDNLVHH-FRNPRFELIRHDVVEPI--------------L 178 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~-~~~~~~~~~~~-~~~~~v~~~~~Dv~~~~--------------~ 178 (263)
.|.++||||+.+||.-|+++|++. |.++++..++ +++..+++... ....++.++..|++... .
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~ 82 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGS 82 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhccc
Confidence 467999999999999999999986 6666555444 55433333222 25789999999997641 2
Q ss_pred CCCcEEEEccCCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHH----HHc-----C-------CeEEEEcCcc
Q 024766 179 LEVDQIYHLACPASPVHYKY-----NPVKTIKTNVMGTLNMLGLA----KRV-----G-------AKFLLTSTSE 232 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~~-----~~~~~~~~Nv~gt~~ll~~a----~~~-----~-------~~iV~vSS~~ 232 (263)
.++|+++||||+........ .+-+.+++|..|+..+.+.+ ++. | ..||++||.+
T Consensus 83 ~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~ 157 (249)
T KOG1611|consen 83 DGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSA 157 (249)
T ss_pred CCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccc
Confidence 45899999999765443222 24566799999977766553 221 1 2699998864
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-10 Score=96.77 Aligned_cols=129 Identities=23% Similarity=0.243 Sum_probs=95.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCCCceEEEEcccccc-------ccCCCcEEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-------ILLEVDQIYH 186 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-------~~~~iD~Vi~ 186 (263)
+|+|+|||++|.+|++|.+.+.++|. +=.++.- . -++|+++. ..+++..|||
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~--------------s-----kd~DLt~~a~t~~lF~~ekPthVIh 61 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIG--------------S-----KDADLTNLADTRALFESEKPTHVIH 61 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEec--------------c-----ccccccchHHHHHHHhccCCceeee
Confidence 47899999999999999999999986 2222211 1 12333332 2356899999
Q ss_pred ccCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 187 LACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 187 ~Ag~~~~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.|+..+.... ...+.+.|+.|+..-.|++..|-++|+ ++|+..|++.|.+....|++|+......|......|+.+|
T Consensus 62 lAAmVGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYsyAK 140 (315)
T KOG1431|consen 62 LAAMVGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAK 140 (315)
T ss_pred hHhhhcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHHHHH
Confidence 9986543222 223567789999999999999999998 8999999999999999999999976555555555665544
|
|
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.2e-09 Score=94.60 Aligned_cols=92 Identities=16% Similarity=0.122 Sum_probs=70.1
Q ss_pred HHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc---------cCCCcEEEEccCCCCCCCCCCCHHH
Q 024766 132 LVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI---------LLEVDQIYHLACPASPVHYKYNPVK 202 (263)
Q Consensus 132 l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~---------~~~iD~Vi~~Ag~~~~~~~~~~~~~ 202 (263)
++++|+++|++|++++|+.+... ...++.+|+++.. ..++|+||||||... ..+++.
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~~----------~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~----~~~~~~ 66 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGMT----------LDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPG----TAPVEL 66 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchhh----------hhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCC----CCCHHH
Confidence 47899999999999998754321 1235677887651 135999999998642 246788
Q ss_pred HHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceecCC
Q 024766 203 TIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDP 237 (263)
Q Consensus 203 ~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg~~ 237 (263)
.+++|+.|+.++++++.+. +.+||++||.+.|+.+
T Consensus 67 ~~~vN~~~~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~ 104 (241)
T PRK12428 67 VARVNFLGLRHLTEALLPRMAPGGAIVNVASLAGAEWP 104 (241)
T ss_pred hhhhchHHHHHHHHHHHHhccCCcEEEEeCcHHhhccc
Confidence 9999999999999998653 2499999999888643
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-09 Score=93.07 Aligned_cols=138 Identities=21% Similarity=0.226 Sum_probs=95.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhC-CC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccc-c------CCCcEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDR-GD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-L------LEVDQI 184 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~-G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-~------~~iD~V 184 (263)
-+.-+|+|||+-|.+|..+++.|..+ |- .|++.+..... + ..+. ..-++-.|+.|.. + ..+|.+
T Consensus 42 ~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp--~---~V~~--~GPyIy~DILD~K~L~eIVVn~RIdWL 114 (366)
T KOG2774|consen 42 QKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPP--A---NVTD--VGPYIYLDILDQKSLEEIVVNKRIDWL 114 (366)
T ss_pred CCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCc--h---hhcc--cCCchhhhhhccccHHHhhccccccee
Confidence 34458999999999999999988876 54 56654432111 1 1111 2234556666541 1 249999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
||..+.-+... +.+..-+.++|+.|..|+++.|+++..+++.-||+++||+... -..+ ++..-..|++.||.||
T Consensus 115 ~HfSALLSAvG-E~NVpLA~~VNI~GvHNil~vAa~~kL~iFVPSTIGAFGPtSP--RNPT--PdltIQRPRTIYGVSK 188 (366)
T KOG2774|consen 115 VHFSALLSAVG-ETNVPLALQVNIRGVHNILQVAAKHKLKVFVPSTIGAFGPTSP--RNPT--PDLTIQRPRTIYGVSK 188 (366)
T ss_pred eeHHHHHHHhc-ccCCceeeeecchhhhHHHHHHHHcCeeEeecccccccCCCCC--CCCC--CCeeeecCceeechhH
Confidence 99976533322 3455566789999999999999999889999999999995432 1111 3446789999999987
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.1e-08 Score=87.02 Aligned_cols=117 Identities=15% Similarity=0.093 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccchhhhhhhcC-CCceEEEEc-ccc--ccccCCCcEEEEc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFR-NPRFELIRH-DVV--EPILLEVDQIYHL 187 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~-Dv~--~~~~~~iD~Vi~~ 187 (263)
+++++|.|+|++|.||..++..|+.++ .+++++|+. .......++.. ...+.+... |-. .+.+.+.|+||++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~--~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVit 83 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV--GAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLIC 83 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC--CCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEEC
Confidence 567799999999999999999999655 589999982 22222222211 112222211 211 3577899999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCccee
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vy 234 (263)
||... ....+..+.+..|+.++.++++++++++. ++|+++|--+-
T Consensus 84 aG~~~--~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvd 129 (321)
T PTZ00325 84 AGVPR--KPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVN 129 (321)
T ss_pred CCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH
Confidence 98643 22346788899999999999999999997 89999986543
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6e-09 Score=88.44 Aligned_cols=119 Identities=18% Similarity=0.112 Sum_probs=78.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch-hhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
.++.+++||++.+||..++..+..++.+.....+...... +.+... .........+|+++.. -.+.
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~~~~L~v~-~gd~~v~~~g~~~e~~~l~al~e~~r~k~gkr 83 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAELEGLKVA-YGDDFVHVVGDITEEQLLGALREAPRKKGGKR 83 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhcccccccceEEE-ecCCcceechHHHHHHHHHHHHhhhhhcCCce
Confidence 4678999999999999999999999876554433221111 111111 1234455566665542 1358
Q ss_pred cEEEEccCCCCCCC--C-----CCCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCccee
Q 024766 182 DQIYHLACPASPVH--Y-----KYNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVY 234 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~--~-----~~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vy 234 (263)
|+||||||...+.. + .+.+.+.|+.|+++...+.+.+. +.. ..+|++||.+.-
T Consensus 84 ~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav 149 (253)
T KOG1204|consen 84 DIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAV 149 (253)
T ss_pred eEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhh
Confidence 99999999766543 1 12478899999999888777653 332 369999997554
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.7e-08 Score=88.33 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=87.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc-----CCCcEEEEcc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL-----LEVDQIYHLA 188 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~-----~~iD~Vi~~A 188 (263)
++|-.+-|.|||||+|+.++.+|.+.|-+|++-.|..+.....+.-.-+..++.+...|+.|+.. ..-++|||..
T Consensus 59 ~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNVVINLI 138 (391)
T KOG2865|consen 59 VSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNVVINLI 138 (391)
T ss_pred ccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeecccccceeeeccCCCCHHHHHHHHHhCcEEEEee
Confidence 56668889999999999999999999999999988644332222211134678888889988854 3479999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcce
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEV 233 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~v 233 (263)
|--- +...-...++|+.+...+.+.|++.|+ ++|++|+.++
T Consensus 139 Grd~----eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~Lga 180 (391)
T KOG2865|consen 139 GRDY----ETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCLGA 180 (391)
T ss_pred cccc----ccCCcccccccchHHHHHHHHHHhhChhheeehhhccc
Confidence 7321 111112235999999999999999998 9999999753
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.1e-08 Score=91.59 Aligned_cols=122 Identities=21% Similarity=0.240 Sum_probs=79.7
Q ss_pred ccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccC----
Q 024766 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILL---- 179 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~---- 179 (263)
.....+..+|+|+||||.+|+-+++.|+++|+.|.++.|+.++................+..|.... ..+
T Consensus 73 ~~~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~ 152 (411)
T KOG1203|consen 73 NNNSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPK 152 (411)
T ss_pred CCCCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhccc
Confidence 3344567799999999999999999999999999999997665544433111222223333333222 111
Q ss_pred CCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vy 234 (263)
...+++-|+| .....+ +...-+.+...|+.|++++|+..|+ |+|++|+++.-
T Consensus 153 ~~~~v~~~~g--grp~~e-d~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~ 205 (411)
T KOG1203|consen 153 GVVIVIKGAG--GRPEEE-DIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGT 205 (411)
T ss_pred cceeEEeccc--CCCCcc-cCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCc
Confidence 1345555554 222222 1222246889999999999999997 99999887553
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.9e-08 Score=85.36 Aligned_cols=101 Identities=24% Similarity=0.365 Sum_probs=70.6
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCCCCC
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPASP 193 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~~~~ 193 (263)
|+|+||||.+|+.+++.|++.+++|.++.|+..... . ..+....++++.+|..|+ .+.++|.||.+.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~--~-~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~- 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDR--A-QQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH- 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHH--H-HHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhh--h-hhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence 789999999999999999999999999999763322 1 111223557778888765 5678999999886433
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCccee
Q 024766 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vy 234 (263)
. .-.....+++++|++.|+ +||+.|-...+
T Consensus 77 ----~-------~~~~~~~~li~Aa~~agVk~~v~ss~~~~~ 107 (233)
T PF05368_consen 77 ----P-------SELEQQKNLIDAAKAAGVKHFVPSSFGADY 107 (233)
T ss_dssp ----C-------CHHHHHHHHHHHHHHHT-SEEEESEESSGT
T ss_pred ----h-------hhhhhhhhHHHhhhccccceEEEEEecccc
Confidence 1 223345689999999998 66643333334
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.3e-08 Score=79.52 Aligned_cols=96 Identities=13% Similarity=0.061 Sum_probs=67.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCcEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQI 184 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD~V 184 (263)
|+++||||+|++|. +++.|+++|++|++++|+.+...+.....-....+..+.+|+.|+. ...+|++
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~l 79 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLA 79 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEE
Confidence 47999999987765 9999999999999999865433222221212346788889998762 2357888
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-----eEEEEcCc
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-----KFLLTSTS 231 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-----~iV~vSS~ 231 (263)
|+.+- +.++.++..+|++.+. +++++=.+
T Consensus 80 v~~vh------------------~~~~~~~~~~~~~~gv~~~~~~~~h~~gs 113 (177)
T PRK08309 80 VAWIH------------------SSAKDALSVVCRELDGSSETYRLFHVLGS 113 (177)
T ss_pred EEecc------------------ccchhhHHHHHHHHccCCCCceEEEEeCC
Confidence 87662 2356688899988874 48876433
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1e-07 Score=82.29 Aligned_cols=120 Identities=16% Similarity=0.137 Sum_probs=86.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCe-----EEEEecCCccchhhhhhhc---C--CCceEEEEcccccc--------
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDE-----VIVIDNFFTGRKDNLVHHF---R--NPRFELIRHDVVEP-------- 176 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~-----V~~l~r~~~~~~~~~~~~~---~--~~~v~~~~~Dv~~~-------- 176 (263)
..|.++|||++++||.+++++|++...+ +++.+|+-++.++....+. . ..+++++..|+++-
T Consensus 2 ~RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~ 81 (341)
T KOG1478|consen 2 MRKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASK 81 (341)
T ss_pred CceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHH
Confidence 3578999999999999999999998653 4556777665554433332 2 34788899999775
Q ss_pred ----ccCCCcEEEEccCCCCCCC-------------------------------CCCCHHHHHHHHHHHHHHHHHHHHHc
Q 024766 177 ----ILLEVDQIYHLACPASPVH-------------------------------YKYNPVKTIKTNVMGTLNMLGLAKRV 221 (263)
Q Consensus 177 ----~~~~iD~Vi~~Ag~~~~~~-------------------------------~~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (263)
.+..+|.|+-|||...... ..++....|++||+|.+.+++.....
T Consensus 82 di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pl 161 (341)
T KOG1478|consen 82 DIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPL 161 (341)
T ss_pred HHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhH
Confidence 3346999999999543221 12345667899999999998876432
Q ss_pred ---C-C-eEEEEcCccee
Q 024766 222 ---G-A-KFLLTSTSEVY 234 (263)
Q Consensus 222 ---~-~-~iV~vSS~~vy 234 (263)
+ . ++|.+||...-
T Consensus 162 l~~~~~~~lvwtSS~~a~ 179 (341)
T KOG1478|consen 162 LCHSDNPQLVWTSSRMAR 179 (341)
T ss_pred hhcCCCCeEEEEeecccc
Confidence 2 2 89999997554
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.6e-07 Score=79.04 Aligned_cols=106 Identities=22% Similarity=0.228 Sum_probs=74.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 191 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~~ 191 (263)
++|+||||||++|++++++|+++|++|.++.|+.+...... ..++....|+.+. .+.++|.++++.+..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~------~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~ 74 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA------GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLL 74 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc------CCcEEEEeccCCHhHHHHHhccccEEEEEeccc
Confidence 47999999999999999999999999999998755543322 6788888888876 456799999988643
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceec
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg 235 (263)
. .. . ...........+..+.+. .+. +++.+|...+..
T Consensus 75 ~-~~---~--~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~~~~~~ 112 (275)
T COG0702 75 D-GS---D--AFRAVQVTAVVRAAEAAG-AGVKHGVSLSVLGADA 112 (275)
T ss_pred c-cc---c--chhHHHHHHHHHHHHHhc-CCceEEEEeccCCCCC
Confidence 2 11 1 122344444444444444 223 788888776543
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.7e-06 Score=78.45 Aligned_cols=111 Identities=13% Similarity=0.002 Sum_probs=78.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcC-CCceEEEE---ccccccccCCCcEEEEccC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFR-NPRFELIR---HDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~---~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.++|.|||++|.||..++..|+.++. +++++|+.+ ......++.. .....+.. .|...+.+.+.|+||++||
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~--~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN--TPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC--CCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 35899999999999999999997655 899999865 2221222111 11122221 1112346889999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS 230 (263)
.... ...+..+.+..|+..+.++.+.+++++. .+|+++|
T Consensus 96 ~~~~--~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvS 135 (323)
T PLN00106 96 VPRK--PGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIIS 135 (323)
T ss_pred CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 6433 2356788899999999999999999987 7777766
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.6e-08 Score=78.35 Aligned_cols=113 Identities=16% Similarity=0.120 Sum_probs=76.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCCCceEEEEccc-----cccccCCCcEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-----VEPILLEVDQIY 185 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv-----~~~~~~~iD~Vi 185 (263)
..+++.++|.||||-.|..+++.+++.+. +|+++.|+.....+ . ...+.-...|. ....+.++|+.|
T Consensus 15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~a-t-----~k~v~q~~vDf~Kl~~~a~~~qg~dV~F 88 (238)
T KOG4039|consen 15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPA-T-----DKVVAQVEVDFSKLSQLATNEQGPDVLF 88 (238)
T ss_pred hhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCCcc-c-----cceeeeEEechHHHHHHHhhhcCCceEE
Confidence 35678899999999999999999999986 89999887422111 1 12222222222 223567899999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCccee
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vy 234 (263)
++-|-.-. ....+....+...-...+.++|++.|+ +|+++||.++-
T Consensus 89 caLgTTRg---kaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd 135 (238)
T KOG4039|consen 89 CALGTTRG---KAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGAD 135 (238)
T ss_pred Eeeccccc---ccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccCCC
Confidence 99863211 111222234555556678899999998 99999998763
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-06 Score=79.21 Aligned_cols=112 Identities=14% Similarity=0.079 Sum_probs=73.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCC-------CeEEEEecCCcc--chhhhhhhcCCC---ceEEEEccccccccCCCcEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRG-------DEVIVIDNFFTG--RKDNLVHHFRNP---RFELIRHDVVEPILLEVDQI 184 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G-------~~V~~l~r~~~~--~~~~~~~~~~~~---~v~~~~~Dv~~~~~~~iD~V 184 (263)
.+|+||||+|+||.+++..|+..+ .+++++++.... ......+..... ..+....+-..+.+.++|+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 379999999999999999999854 589999986432 122111111100 00111111122457789999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEcC
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTST 230 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--~iV~vSS 230 (263)
||+||.... ...+..+.++.|+.-...+.+..+++. . .++.+|.
T Consensus 83 I~tAG~~~~--~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 83 ILVGAMPRK--EGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred EEeCCcCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 999986432 234568889999999999999888874 2 5556664
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.5e-06 Score=71.77 Aligned_cols=107 Identities=16% Similarity=0.244 Sum_probs=77.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 191 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~~ 191 (263)
|+|.|+||+|.+|+.++++..++|++|+++.|+..+..+. ..+...+.|+.|. .+.+.|+||..-|..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~ 73 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-------QGVTILQKDIFDLTSLASDLAGHDAVISAFGAG 73 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-------ccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence 4799999999999999999999999999999987654331 3456777777765 456799999887643
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcc-eecCCC
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSE-VYGDPL 238 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~-vyg~~~ 238 (263)
.+ +.+. ........+++..+..+. |++.++.++ .|-+++
T Consensus 74 ~~-----~~~~---~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g 114 (211)
T COG2910 74 AS-----DNDE---LHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEG 114 (211)
T ss_pred CC-----ChhH---HHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCC
Confidence 21 1111 223336678888888887 999998864 454443
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.8e-07 Score=78.87 Aligned_cols=76 Identities=20% Similarity=0.466 Sum_probs=51.3
Q ss_pred CCCCEEEEEcCC----------------ChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc--cccc
Q 024766 114 RRRLRIVVTGGA----------------GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH--DVVE 175 (263)
Q Consensus 114 ~~~k~vlVTGat----------------G~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~--Dv~~ 175 (263)
++||+|+||+|. ||+|.+|+++|+++|++|+++++.......... ....+..+.. |+.+
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~---~~~~~~~V~s~~d~~~ 77 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDIN---NQLELHPFEGIIDLQD 77 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccC---CceeEEEEecHHHHHH
Confidence 368899999886 999999999999999999999864322111111 1122333444 4433
Q ss_pred c---cc--CCCcEEEEccCCCC
Q 024766 176 P---IL--LEVDQIYHLACPAS 192 (263)
Q Consensus 176 ~---~~--~~iD~Vi~~Ag~~~ 192 (263)
. .+ .++|+|||+|++..
T Consensus 78 ~l~~~~~~~~~D~VIH~AAvsD 99 (229)
T PRK09620 78 KMKSIITHEKVDAVIMAAAGSD 99 (229)
T ss_pred HHHHHhcccCCCEEEECccccc
Confidence 2 33 35899999999643
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.3e-06 Score=73.76 Aligned_cols=111 Identities=19% Similarity=0.118 Sum_probs=74.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHh---CCCeEEEEecCCccchhhhhhhcCCCceEEEE---ccccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLID---RGDEVIVIDNFFTGRKDNLVHHFRNPRFELIR---HDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~---~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~---~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
|+|+|+||+|.||++++..|.. .++++.+++++.. ......+.........+. .+-..+.+.++|+||.++|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-CcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 5899999999999999998855 2447788887633 221111221111111222 22213456789999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS 230 (263)
... ...+..+.+..|...+.++++.+++.+. ++|.+.|
T Consensus 80 ~~~--~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvs 118 (312)
T PRK05086 80 ARK--PGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIIT 118 (312)
T ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 432 2345677889999999999999999886 6666655
|
|
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.4e-06 Score=72.98 Aligned_cols=68 Identities=18% Similarity=0.376 Sum_probs=46.0
Q ss_pred EEEE-cCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccc-------cccCCCcEEEEccCC
Q 024766 119 IVVT-GGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE-------PILLEVDQIYHLACP 190 (263)
Q Consensus 119 vlVT-GatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~-------~~~~~iD~Vi~~Ag~ 190 (263)
-+|| .++|++|.+|+++|+++|++|++++|....... ....+.++..+..+ ..+.++|+||||||+
T Consensus 18 R~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~~------~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAv 91 (229)
T PRK06732 18 RGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVKPE------PHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAV 91 (229)
T ss_pred eeecCccchHHHHHHHHHHHhCCCEEEEEECcccccCC------CCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCcc
Confidence 3455 568899999999999999999999875321110 11244555444332 234579999999997
Q ss_pred CC
Q 024766 191 AS 192 (263)
Q Consensus 191 ~~ 192 (263)
..
T Consensus 92 sd 93 (229)
T PRK06732 92 SD 93 (229)
T ss_pred CC
Confidence 54
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.4e-06 Score=77.81 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCChHHHH--HHHHHHhCCCeEEEEecCCccch-----------hhhhhhc--CCCceEEEEcccccc--
Q 024766 114 RRRLRIVVTGGAGFVGSH--LVDKLIDRGDEVIVIDNFFTGRK-----------DNLVHHF--RNPRFELIRHDVVEP-- 176 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~--l~~~Ll~~G~~V~~l~r~~~~~~-----------~~~~~~~--~~~~v~~~~~Dv~~~-- 176 (263)
..+|++||||++++||.+ +++.| +.|++|+++++..+... +...+.. ....+..+.+|++++
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~ 117 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI 117 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence 346899999999999999 89999 99999988875322111 1111111 134567789999875
Q ss_pred ----------ccCCCcEEEEccCCC
Q 024766 177 ----------ILLEVDQIYHLACPA 191 (263)
Q Consensus 177 ----------~~~~iD~Vi~~Ag~~ 191 (263)
.+.++|+||||+|..
T Consensus 118 v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 118 KQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHhcCCCCEEEECCccC
Confidence 345699999999865
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=4e-06 Score=77.45 Aligned_cols=71 Identities=24% Similarity=0.304 Sum_probs=56.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag 189 (263)
+++|+|.|+ |+||+.++..|+++| .+|++.+|+.++..+..... ..+++....|+.|. .+.+.|+|||++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--GGKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--cccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 578999997 999999999999999 69999999766544333322 33788888888765 4567899999995
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=98.21 E-value=4e-05 Score=61.35 Aligned_cols=112 Identities=14% Similarity=0.109 Sum_probs=78.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhc---CCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
++|.|+|++|.+|.+++..|...+. +++++++..+.......+.. ...........-..+.+.+.|+||..||..
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGVP 80 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTSTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecccc
Confidence 4799999999999999999999875 89999987554443333321 111222222223445677899999999854
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
. ....+-.+.++.|..-...+.+..++.+. .++.+|.
T Consensus 81 ~--~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtN 119 (141)
T PF00056_consen 81 R--KPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTN 119 (141)
T ss_dssp S--STTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SS
T ss_pred c--cccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCC
Confidence 2 23345678889999999999999988875 4555543
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.9e-06 Score=77.10 Aligned_cols=70 Identities=23% Similarity=0.260 Sum_probs=51.5
Q ss_pred cCCCCEEEEEcC----------------CChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc
Q 024766 113 GRRRLRIVVTGG----------------AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176 (263)
Q Consensus 113 ~~~~k~vlVTGa----------------tG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~ 176 (263)
.+++|+++|||| +|.+|.+++++|+++|++|+++++.... . ....+ ...|+.+.
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~-~-------~~~~~--~~~dv~~~ 254 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNL-P-------TPAGV--KRIDVESA 254 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccc-c-------CCCCc--EEEccCCH
Confidence 468999999999 8889999999999999999999875421 0 01112 23344432
Q ss_pred ---------ccCCCcEEEEccCCCC
Q 024766 177 ---------ILLEVDQIYHLACPAS 192 (263)
Q Consensus 177 ---------~~~~iD~Vi~~Ag~~~ 192 (263)
.+.++|++|||||+..
T Consensus 255 ~~~~~~v~~~~~~~DilI~~Aav~d 279 (399)
T PRK05579 255 QEMLDAVLAALPQADIFIMAAAVAD 279 (399)
T ss_pred HHHHHHHHHhcCCCCEEEEcccccc
Confidence 3467999999999743
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.5e-06 Score=69.14 Aligned_cols=77 Identities=14% Similarity=0.142 Sum_probs=53.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccc-----cccCCCcEEEEc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE-----PILLEVDQIYHL 187 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~-----~~~~~iD~Vi~~ 187 (263)
.+++++++|+||+|++|+.+++.|++.|++|+++.|+.++..+................|..+ ..+.+.|+||++
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~a 104 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAA 104 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEEC
Confidence 467889999999999999999999999999999988754433322222111122333444433 345679999997
Q ss_pred cC
Q 024766 188 AC 189 (263)
Q Consensus 188 Ag 189 (263)
..
T Consensus 105 t~ 106 (194)
T cd01078 105 GA 106 (194)
T ss_pred CC
Confidence 74
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.1e-05 Score=63.93 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=60.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCe-EEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~-V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
.+++++++|.|+ |+.|+.++..|.+.|.+ |+++.|+.++.. .+.+.+....+..+..+-....+.+.|+||++.+..
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~-~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAE-ALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG 86 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHH-HHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHH-HHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC
Confidence 568899999995 99999999999999995 888888755443 444444566788888877777788999999998644
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.6e-05 Score=75.13 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=57.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
+++|+++|+|+++ +|..+++.|+++|++|+++++......+...+.+....+.++..|..+....++|+||+++|.
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 5678999999766 999999999999999999998642221111111233356788888888777889999999975
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.7e-05 Score=68.65 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=74.7
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC-------eEEEEecCC--ccchhhhhhhcCC-----CceEEEEccccccccCCCcE
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFF--TGRKDNLVHHFRN-----PRFELIRHDVVEPILLEVDQ 183 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~-------~V~~l~r~~--~~~~~~~~~~~~~-----~~v~~~~~Dv~~~~~~~iD~ 183 (263)
+|.||||+|.||..++..|+..|. +++++|+.. +.......+.... ..+. +. +-..+.+.++|+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~-i~-~~~~~~~~~aDi 79 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVV-IT-TDPEEAFKDVDV 79 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcE-Ee-cChHHHhCCCCE
Confidence 799999999999999999998654 488888865 3322222221111 1122 22 223456788999
Q ss_pred EEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEcC
Q 024766 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTST 230 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--~iV~vSS 230 (263)
|||.||... ....+-.+.+..|+.-...+....++.+ . .++.+|.
T Consensus 80 VVitAG~~~--~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 127 (323)
T cd00704 80 AILVGAFPR--KPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN 127 (323)
T ss_pred EEEeCCCCC--CcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 999999643 2345667889999999999999998884 4 4555553
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.2e-05 Score=69.48 Aligned_cols=91 Identities=11% Similarity=0.180 Sum_probs=53.1
Q ss_pred EEE-cCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-------ccCCCcEEEEccCCC
Q 024766 120 VVT-GGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-------ILLEVDQIYHLACPA 191 (263)
Q Consensus 120 lVT-GatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-------~~~~iD~Vi~~Ag~~ 191 (263)
+|| .++|+||.+++++|+++|++|+++++... . ... ....+++...+-.+. .+..+|++|||||+.
T Consensus 18 ~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~-l----~~~-~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnAgv~ 91 (227)
T TIGR02114 18 SITNHSTGHLGKIITETFLSAGHEVTLVTTKRA-L----KPE-PHPNLSIREIETTKDLLITLKELVQEHDILIHSMAVS 91 (227)
T ss_pred eecCCcccHHHHHHHHHHHHCCCEEEEEcChhh-c----ccc-cCCcceeecHHHHHHHHHHHHHHcCCCCEEEECCEec
Confidence 455 45899999999999999999999875211 1 000 011233333222221 345699999999975
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHHHHH
Q 024766 192 SPVHY-KYNPVKTIKTNVMGTLNMLG 216 (263)
Q Consensus 192 ~~~~~-~~~~~~~~~~Nv~gt~~ll~ 216 (263)
..... ..+.+++.+++..+++.+.+
T Consensus 92 d~~~~~~~s~e~~~~~~~~~~~~~~~ 117 (227)
T TIGR02114 92 DYTPVYMTDLEQVQASDNLNEFLSKQ 117 (227)
T ss_pred cccchhhCCHHHHhhhcchhhhhccc
Confidence 43332 22344444555555555443
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.6e-06 Score=74.26 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=51.3
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhC-C-CeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDR-G-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~-G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
..+++|+|+||||+|+||+.++++|+++ | .+++++.|+.....+ +...+.... .. | .+..+.++|+|||+++
T Consensus 151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~-La~el~~~~--i~--~-l~~~l~~aDiVv~~ts 224 (340)
T PRK14982 151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQE-LQAELGGGK--IL--S-LEEALPEADIVVWVAS 224 (340)
T ss_pred cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHH-HHHHhcccc--HH--h-HHHHHccCCEEEECCc
Confidence 3578899999999999999999999865 5 488888876443332 222211111 11 2 2356678999999997
Q ss_pred CCC
Q 024766 190 PAS 192 (263)
Q Consensus 190 ~~~ 192 (263)
...
T Consensus 225 ~~~ 227 (340)
T PRK14982 225 MPK 227 (340)
T ss_pred CCc
Confidence 543
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=97.99 E-value=2.2e-05 Score=72.88 Aligned_cols=89 Identities=27% Similarity=0.303 Sum_probs=60.6
Q ss_pred EEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCCC
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 191 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~~ 191 (263)
|+|.|+ |++|+.+++.|++.+. +|++.+|+.++..+..... ...++.....|+.|. .+.+.|+||||+|+.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-LGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-cccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 689999 9999999999999975 7999998766544443332 567899999999875 456799999999753
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL 227 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~ 227 (263)
. ...++++|.+.|+++|-
T Consensus 79 ~------------------~~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 79 F------------------GEPVARACIEAGVHYVD 96 (386)
T ss_dssp G------------------HHHHHHHHHHHT-EEEE
T ss_pred h------------------hHHHHHHHHHhCCCeec
Confidence 1 11466666666666555
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00023 Score=64.54 Aligned_cols=111 Identities=18% Similarity=0.210 Sum_probs=80.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCC----CceEEEEccccccccCCCcEEEEcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN----PRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~----~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
.+++|.|+|+ |.||..++..|+..|. ++.++|++.+.......+.... ..+.+...| -+.+.+.|+||..|
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~--~~~~~~adivIita 81 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGD--YSDCKDADLVVITA 81 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCC--HHHhCCCCEEEEec
Confidence 4569999997 9999999999999987 8999998766655444443211 233343322 24578999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
|.... ...+-.+.+..|..-...+++.+++.+. .++.+|.
T Consensus 82 g~~~k--~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN 123 (315)
T PRK00066 82 GAPQK--PGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN 123 (315)
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 86422 2345567889999999999999888764 5666654
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0003 Score=63.39 Aligned_cols=109 Identities=20% Similarity=0.236 Sum_probs=77.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccchhhhhhhcC-----CCceEEEEccccccccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFR-----NPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
++|.|.| +|.+|..++..|+..| .++++++++.+.......+... .........|. ..+.+.|+||+++|
T Consensus 1 ~kI~IIG-aG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~--~~l~~aDIVIitag 77 (306)
T cd05291 1 RKVVIIG-AGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY--SDCKDADIVVITAG 77 (306)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH--HHhCCCCEEEEccC
Confidence 3789999 5999999999999999 5899999976655443333211 12233332222 34689999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
.... ...+-.+.+..|..-...+.+.+++.+. .++.+|.
T Consensus 78 ~~~~--~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 78 APQK--PGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 5422 2345567889999999999999988864 5666654
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00034 Score=63.26 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=74.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCC--ccchhhhhhhc-----CCCceEEEE-ccccccccCCCcEEEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFF--TGRKDNLVHHF-----RNPRFELIR-HDVVEPILLEVDQIYH 186 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~--~~~~~~~~~~~-----~~~~v~~~~-~Dv~~~~~~~iD~Vi~ 186 (263)
++|.|+|++|.+|..++..|+..|. +|+++++.. +.......++. ......+.. .| ...+.+.|+||-
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d--~~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD--LSDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC--HHHhCCCCEEEE
Confidence 4799999999999999999999986 599999843 22222222211 111222222 23 235889999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
++|... ....+-.+.+..|+.-...+.+.+.+.+. .+|.+++
T Consensus 79 tag~p~--~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 79 TAGVPR--KEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred ecCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 998532 22234467778999999999998877753 6666665
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00016 Score=65.69 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=73.2
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC-------eEEEEecCCcc--chhhhhhhcCCC---ceEEEEccccccccCCCcEEE
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFTG--RKDNLVHHFRNP---RFELIRHDVVEPILLEVDQIY 185 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~-------~V~~l~r~~~~--~~~~~~~~~~~~---~v~~~~~Dv~~~~~~~iD~Vi 185 (263)
+|.|+|++|.||..++..|+..+. +++++|+.+.. ......++.... .......+-....+.+.|+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 489999999999999999998554 58888875442 222222211111 000111111235678899999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEcC
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTST 230 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--~iV~vSS 230 (263)
++||.... ...+..+.+..|+.-...+.+..++++ . .++.+|.
T Consensus 81 itAG~~~~--~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN 126 (324)
T TIGR01758 81 LVGAFPRK--EGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN 126 (324)
T ss_pred EcCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence 99986422 234578889999999999999998884 4 5555554
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00033 Score=63.64 Aligned_cols=111 Identities=14% Similarity=0.069 Sum_probs=76.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-------eEEEEecCCcc--chhhhhhhcCC-----CceEEEEccccccccCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFTG--RKDNLVHHFRN-----PRFELIRHDVVEPILLEV 181 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-------~V~~l~r~~~~--~~~~~~~~~~~-----~~v~~~~~Dv~~~~~~~i 181 (263)
.++|.|+|++|.||..++..|+..|. +++++|..... ......++... ..+.+. .+ ....+.+.
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~-~~-~~~~~~da 79 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT-DD-PNVAFKDA 79 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe-cC-cHHHhCCC
Confidence 45899999999999999999998876 68888885332 23222222111 123322 21 23567889
Q ss_pred cEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEcC
Q 024766 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTST 230 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--~iV~vSS 230 (263)
|+||.+||.... ...+-.+.++.|+.-...+....++++ . .++.+|.
T Consensus 80 DivvitaG~~~k--~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (322)
T cd01338 80 DWALLVGAKPRG--PGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGN 129 (322)
T ss_pred CEEEEeCCCCCC--CCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 999999986432 234567789999999999999998877 3 5556654
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00029 Score=60.41 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=78.7
Q ss_pred cCCCCEEEEEcC--CChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCC-CceEEEEcccccc------------c
Q 024766 113 GRRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRN-PRFELIRHDVVEP------------I 177 (263)
Q Consensus 113 ~~~~k~vlVTGa--tG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~Dv~~~------------~ 177 (263)
.++||+++|+|- ...|+..+++.|.++|+++...+..+ +....+.+..+. ....++.||+.+. .
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e-~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~ 81 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGE-RLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKK 81 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccH-HHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHh
Confidence 578999999996 57899999999999999999887654 344444444322 2345789999876 3
Q ss_pred cCCCcEEEEccCCCCCC----CC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEc
Q 024766 178 LLEVDQIYHLACPASPV----HY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTS 229 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~----~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vS 229 (263)
..++|.|||+.|+..-. .+ .+++...+++-..+...+.++++.. |..+|-.+
T Consensus 82 ~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLt 144 (259)
T COG0623 82 WGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLT 144 (259)
T ss_pred hCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEE
Confidence 35699999999875421 12 2234455566666666677776543 33555443
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00052 Score=62.05 Aligned_cols=110 Identities=14% Similarity=0.044 Sum_probs=76.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCC-CceEEEE--c-cccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN-PRFELIR--H-DVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~--~-Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
++|.|+|++|.||..++..|+.+|. +++++|.+ .......++... ....+.. . |-.-+.+.+.|+||-+||.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 4789999999999999999998874 88999886 222222222111 1122222 2 1123568899999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
.- ....+-.+.++.|..-...+.+..++.+. .++.+|.
T Consensus 79 ~~--k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 79 PR--KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN 118 (310)
T ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 32 23445678899999999999999988875 5666665
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0002 Score=65.48 Aligned_cols=105 Identities=20% Similarity=0.292 Sum_probs=70.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCcc--------------------ch----hhhhhhcCCCceE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTG--------------------RK----DNLVHHFRNPRFE 167 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~--------------------~~----~~~~~~~~~~~v~ 167 (263)
.++.++|+|.| .|++|.++++.|+..|. +++++|+..-+ +. +.+.++-...+++
T Consensus 21 ~L~~~~VlIiG-~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 21 KIREKHVLIVG-AGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred hhcCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 46778999999 68899999999999998 88888876311 00 1111221344566
Q ss_pred EEEccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 168 LIRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 168 ~~~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
.+..|++. ..+.+.|+||.+. ++++ ++ ..+-+.|.+.++.+|+.+..+.+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~---------D~~~----~r----~~in~~~~~~~ip~i~~~~~g~~G 154 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDAT---------DNFD----TR----LLINDLSQKYNIPWIYGGCVGSYG 154 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcC---------CCHH----HH----HHHHHHHHHcCCCEEEEEecccEE
Confidence 66666653 3456799999988 1221 11 224467778888899888877766
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=9e-05 Score=66.32 Aligned_cols=77 Identities=10% Similarity=0.129 Sum_probs=52.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCe-EEEEecCCc--cchhhhhhhcC--CCceEEEEcccccc-----ccCCCc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFT--GRKDNLVHHFR--NPRFELIRHDVVEP-----ILLEVD 182 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~-V~~l~r~~~--~~~~~~~~~~~--~~~v~~~~~Dv~~~-----~~~~iD 182 (263)
..++|+++|+|| |++|++++..|++.|++ |++++|+.+ .+.+.+.+.+. ...+.....|+.+. .+...|
T Consensus 123 ~~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D 201 (289)
T PRK12548 123 DVKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD 201 (289)
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence 357889999997 89999999999999995 999998752 22222222221 12334444565432 345689
Q ss_pred EEEEccCC
Q 024766 183 QIYHLACP 190 (263)
Q Consensus 183 ~Vi~~Ag~ 190 (263)
+||||..+
T Consensus 202 ilINaTp~ 209 (289)
T PRK12548 202 ILVNATLV 209 (289)
T ss_pred EEEEeCCC
Confidence 99999754
|
|
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.72 E-value=1.3e-05 Score=74.60 Aligned_cols=71 Identities=23% Similarity=0.278 Sum_probs=49.2
Q ss_pred cCCCCEEEEEcC----------------CChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccc--
Q 024766 113 GRRRLRIVVTGG----------------AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV-- 174 (263)
Q Consensus 113 ~~~~k~vlVTGa----------------tG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~-- 174 (263)
.+++|+++|||| +|.+|.+++++|..+|++|+++.+..... ....+.. .|+.
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~--------~~~~~~~--~~v~~~ 251 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL--------TPPGVKS--IKVSTA 251 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC--------CCCCcEE--EEeccH
Confidence 478999999998 35699999999999999999988654321 0111222 2221
Q ss_pred ----c----cccCCCcEEEEccCCCCC
Q 024766 175 ----E----PILLEVDQIYHLACPASP 193 (263)
Q Consensus 175 ----~----~~~~~iD~Vi~~Ag~~~~ 193 (263)
+ ....++|++|||||+...
T Consensus 252 ~~~~~~~~~~~~~~~D~~i~~Aavsd~ 278 (390)
T TIGR00521 252 EEMLEAALNELAKDFDIFISAAAVADF 278 (390)
T ss_pred HHHHHHHHHhhcccCCEEEEccccccc
Confidence 1 123468999999997543
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00052 Score=61.82 Aligned_cols=110 Identities=18% Similarity=0.139 Sum_probs=75.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCC-----CceEEEEccccccccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN-----PRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~-----~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
++|.|+|+ |.||+.++..|+.++. +++++++..+.......+.... .... +..|-.-+.+.+.|+|+-.||
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~-i~~~~~y~~~~~aDiVvitAG 78 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVK-ITGDGDYEDLKGADIVVITAG 78 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceE-EecCCChhhhcCCCEEEEeCC
Confidence 47999998 9999999999988864 8999998754444333333211 1222 222222457788999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS 230 (263)
..- ....+-.+.++.|..-...+.+...+.+. -++++-|
T Consensus 79 ~pr--KpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 79 VPR--KPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred CCC--CCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 543 23345577889999999999999988875 4444433
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00023 Score=67.23 Aligned_cols=76 Identities=16% Similarity=0.064 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccC-CCcEEEEccCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL-EVDQIYHLACPA 191 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~-~iD~Vi~~Ag~~ 191 (263)
+++|+++|||++| +|.+.++.|++.|++|++.++............ ....+.+..++....... ++|+||+++|+.
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~ 79 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQEL-LEEGIKVICGSHPLELLDEDFDLMVKNPGIP 79 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHH-HhcCCEEEeCCCCHHHhcCcCCEEEECCCCC
Confidence 4678999999876 999999999999999999987643322222222 222344444332222233 499999999864
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00041 Score=63.51 Aligned_cols=107 Identities=21% Similarity=0.293 Sum_probs=71.8
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCcc--------------------chh----hhhhhcCCCce
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTG--------------------RKD----NLVHHFRNPRF 166 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~--------------------~~~----~~~~~~~~~~v 166 (263)
..++.++|+|.| .|++|.++++.|+..|. ++.++|...-+ +.+ .+.++-....+
T Consensus 20 ~~L~~~~VlVvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v 98 (339)
T PRK07688 20 QKLREKHVLIIG-AGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV 98 (339)
T ss_pred HHhcCCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence 346778999999 59999999999999999 89999875211 001 11111123345
Q ss_pred EEEEccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC
Q 024766 167 ELIRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (263)
Q Consensus 167 ~~~~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~ 236 (263)
+.+..+++. +.+.+.|+||.+. +++ ..-..+.++|.+.++.+|+.++.+.||.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~DlVid~~---------Dn~--------~~r~~ln~~~~~~~iP~i~~~~~g~~G~ 155 (339)
T PRK07688 99 EAIVQDVTAEELEELVTGVDLIIDAT---------DNF--------ETRFIVNDAAQKYGIPWIYGACVGSYGL 155 (339)
T ss_pred EEEeccCCHHHHHHHHcCCCEEEEcC---------CCH--------HHHHHHHHHHHHhCCCEEEEeeeeeeeE
Confidence 566656644 2456789999987 122 2222466778888889999888877773
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0013 Score=62.22 Aligned_cols=112 Identities=10% Similarity=0.075 Sum_probs=81.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhC-------CC--eEEEEecCCccchhhhhhhcCC-----CceEEEEccccccccCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDR-------GD--EVIVIDNFFTGRKDNLVHHFRN-----PRFELIRHDVVEPILLE 180 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~-------G~--~V~~l~r~~~~~~~~~~~~~~~-----~~v~~~~~Dv~~~~~~~ 180 (263)
+.-+|.|+|++|.||.+++..|+.. |. +++.++++.+.......++... .++.+. .+ .-+.+.+
T Consensus 99 ~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~-~~-~ye~~kd 176 (444)
T PLN00112 99 KLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG-ID-PYEVFQD 176 (444)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe-cC-CHHHhCc
Confidence 3458999999999999999999988 65 7889998877766655554321 122222 22 2357789
Q ss_pred CcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-cCC--eEEEEcC
Q 024766 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR-VGA--KFLLTST 230 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~--~iV~vSS 230 (263)
.|+||-.||... ....+-.+.++.|+.-...+.+...+ .+. .||.+|.
T Consensus 177 aDiVVitAG~pr--kpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 177 AEWALLIGAKPR--GPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred CCEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 999999998632 23445678899999999999999988 454 5666664
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0013 Score=59.55 Aligned_cols=109 Identities=14% Similarity=0.016 Sum_probs=74.9
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCC-CceEEEE--cc-ccccccCCCcEEEEccCCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN-PRFELIR--HD-VVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~--~D-v~~~~~~~iD~Vi~~Ag~~ 191 (263)
+|.|+|++|.||..++..|+.++. +++++|+.. . .....+.... ....+.. .| ...+.+.+.|+||.+||..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a-~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~ 78 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-A-AGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP 78 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-C-cEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC
Confidence 478999999999999999998875 788888865 2 2222222111 1122222 11 1235788999999999864
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
.. ...+-.+.+..|+.-...+.+..++.+. .++.+|.
T Consensus 79 ~~--~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 79 RK--PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred CC--CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 22 2345677889999999999999888874 5566655
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00092 Score=62.15 Aligned_cols=103 Identities=17% Similarity=0.181 Sum_probs=63.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccchhhhhhhcCC-CceEEE-EccccccccCCCcEEEEccCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRN-PRFELI-RHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~-~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
.+.++|.|.||||++|.+|++.|+++ +.++..+.+....- +.+...... ...+.. ..++....+.++|+||-+.+.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG-~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~ 114 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG-QSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH 114 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC-CCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH
Confidence 35679999999999999999999998 55888887643221 111111100 000111 112222235789999998742
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~ 236 (263)
. ...+++..+ +.++++|-.|+..-+.+
T Consensus 115 ~------------------~s~~i~~~~-~~g~~VIDlSs~fRl~~ 141 (381)
T PLN02968 115 G------------------TTQEIIKAL-PKDLKIVDLSADFRLRD 141 (381)
T ss_pred H------------------HHHHHHHHH-hCCCEEEEcCchhccCC
Confidence 1 344566665 45679999999876543
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00049 Score=54.32 Aligned_cols=102 Identities=21% Similarity=0.345 Sum_probs=67.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch----------------------hhhhhhcCCCceEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK----------------------DNLVHHFRNPRFELIRHD 172 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~----------------------~~~~~~~~~~~v~~~~~D 172 (263)
.++|+|.| .|++|.++++.|+..|. +++++|...=... +.+.+.....++..+..+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 46899999 79999999999999999 7888875411100 111112234466677666
Q ss_pred ccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 173 VVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 173 v~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
+.+ ..+.+.|+||.+.. + ...-..+.+.+++.+..+|..++.+.+|
T Consensus 81 ~~~~~~~~~~~~~d~vi~~~d---------~--------~~~~~~l~~~~~~~~~p~i~~~~~g~~G 130 (135)
T PF00899_consen 81 IDEENIEELLKDYDIVIDCVD---------S--------LAARLLLNEICREYGIPFIDAGVNGFYG 130 (135)
T ss_dssp CSHHHHHHHHHTSSEEEEESS---------S--------HHHHHHHHHHHHHTT-EEEEEEEETTEE
T ss_pred cccccccccccCCCEEEEecC---------C--------HHHHHHHHHHHHHcCCCEEEEEeecCEE
Confidence 633 24557999999872 1 1222346678888888899888877666
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0021 Score=58.20 Aligned_cols=109 Identities=14% Similarity=0.121 Sum_probs=75.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCC----CceEEEE-ccccccccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN----PRFELIR-HDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~----~~v~~~~-~Dv~~~~~~~iD~Vi~~Ag 189 (263)
++|.|+|+ |.||..++..|+..|. +++++|.+.+.......++... ....+.. .|.. .+.+.|+||.+||
T Consensus 4 ~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~--~~~~adivvitaG 80 (312)
T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS--VTANSKVVIVTAG 80 (312)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH--HhCCCCEEEECCC
Confidence 48999995 9999999999998875 7899998765444443333211 1113332 3332 4789999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
.... ...+-.+.+..|..-...+.+..++.+. .++++|.
T Consensus 81 ~~~k--~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 81 ARQN--EGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred CCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 6432 2345567789999999999999888864 5556654
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0026 Score=57.87 Aligned_cols=109 Identities=16% Similarity=0.094 Sum_probs=75.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-------eEEEEecCCc--cchhhhhhhcCC-----CceEEEEccccccccCCCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFT--GRKDNLVHHFRN-----PRFELIRHDVVEPILLEVD 182 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-------~V~~l~r~~~--~~~~~~~~~~~~-----~~v~~~~~Dv~~~~~~~iD 182 (263)
.+|.|+|++|+||..++..|+..|. +++++|.... .......+.... ..+.+ ..+ ..+.+.+.|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-~~~-~~~~~~daD 81 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVA-TTD-PEEAFKDVD 81 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEE-ecC-hHHHhCCCC
Confidence 4899999999999999999998874 7888888542 233333322211 11222 121 235678899
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC---eEEEEc
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA---KFLLTS 229 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~---~iV~vS 229 (263)
+||.+||... ....+-.+.+..|..-...+...+++++. .++.+|
T Consensus 82 vVVitAG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 82 AALLVGAFPR--KPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred EEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 9999998642 23456778899999999999999988763 455555
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0023 Score=58.25 Aligned_cols=112 Identities=13% Similarity=0.053 Sum_probs=75.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-------eEEEEecCCcc--chhhhhhhcCC-----CceEEEEccccccccCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFTG--RKDNLVHHFRN-----PRFELIRHDVVEPILLE 180 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-------~V~~l~r~~~~--~~~~~~~~~~~-----~~v~~~~~Dv~~~~~~~ 180 (263)
+.++|.|+|++|.||..++..|+..|. +++++|+.+.. ......+.... ..+.+. .-..+.+.+
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~y~~~~d 80 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDPNVAFKD 80 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cChHHHhCC
Confidence 456899999999999999999988654 68888875432 22222222111 122222 122356788
Q ss_pred CcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEcC
Q 024766 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTST 230 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--~iV~vSS 230 (263)
.|+||-+||... ....+-.+.+..|..-...+.+..+++. . .++.+|.
T Consensus 81 aDiVVitaG~~~--k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsN 131 (326)
T PRK05442 81 ADVALLVGARPR--GPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGN 131 (326)
T ss_pred CCEEEEeCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 999999998532 2345667889999999999999998854 2 5666664
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0024 Score=49.44 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=56.4
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcC--CCceEEEEccccccccCCCcEEEEccCCCCCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR--NPRFELIRHDVVEPILLEVDQIYHLACPASPV 194 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~ 194 (263)
+|.|.||||++|++|++.|++.-. +++.+..+.......+..... ....++...|.....+.++|+||.|.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~---- 76 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH---- 76 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH----
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch----
Confidence 689999999999999999999644 655544433322222222211 1112222223333456889999999831
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCc
Q 024766 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (263)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~ 231 (263)
.....+...+.+.|+++|=.|+.
T Consensus 77 --------------~~~~~~~~~~~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 77 --------------GASKELAPKLLKAGIKVIDLSGD 99 (121)
T ss_dssp --------------HHHHHHHHHHHHTTSEEEESSST
T ss_pred --------------hHHHHHHHHHhhCCcEEEeCCHH
Confidence 01234556667777777766665
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.002 Score=57.98 Aligned_cols=110 Identities=14% Similarity=0.092 Sum_probs=73.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcC-----CCceEEE-EccccccccCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR-----NPRFELI-RHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~-~~Dv~~~~~~~iD~Vi~~A 188 (263)
+++|.|+|+ |.+|..++..++..|. +|++++++++.......+... .....+. ..|. ..+.+.|+||.++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~--~~~~~aDiVii~~ 78 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY--EDIAGSDVVVITA 78 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH--HHHCCCCEEEECC
Confidence 468999997 9999999999999875 999999976654333322111 1112222 1233 3478899999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
|... ....+-.+.+.-|+.-...+++.+.+... .+|++|.
T Consensus 79 ~~p~--~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN 120 (307)
T PRK06223 79 GVPR--KPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN 120 (307)
T ss_pred CCCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 8543 22334566778888888888888877653 4555553
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00058 Score=57.17 Aligned_cols=61 Identities=26% Similarity=0.360 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-------ccCCCcEEEEccCCCC
Q 024766 124 GAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-------ILLEVDQIYHLACPAS 192 (263)
Q Consensus 124 atG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-------~~~~iD~Vi~~Ag~~~ 192 (263)
++|-.|.+|++++..+|++|+++..... .. ....+..+..+-.++ .+.+.|++|++|++..
T Consensus 27 SSG~~G~~lA~~~~~~Ga~V~li~g~~~-~~-------~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVsD 94 (185)
T PF04127_consen 27 SSGKMGAALAEEAARRGAEVTLIHGPSS-LP-------PPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVSD 94 (185)
T ss_dssp --SHHHHHHHHHHHHTT-EEEEEE-TTS------------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--S
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEecCcc-cc-------ccccceEEEecchhhhhhhhccccCcceeEEEecchhh
Confidence 4799999999999999999999986521 10 133566666654433 3456799999998644
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0048 Score=56.04 Aligned_cols=112 Identities=11% Similarity=0.118 Sum_probs=75.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccchhhhhhhcC-----CCceEEEEccccccccCCCcEEEEcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFR-----NPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
+.++|.|+|| |.+|..++..++..| .+++++|++.+.......+... .....+...+-. +.+.+.|+||.++
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVita 81 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVITA 81 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEECC
Confidence 4568999996 999999999999988 6899999876543322221111 112222221212 2678899999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
|.... ...+-.+.+..|..-...+.+.+.+.+. .++++|.
T Consensus 82 g~~~~--~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 82 GVQRK--EEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 85432 2344567788999888888888887764 4666655
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00094 Score=56.63 Aligned_cols=105 Identities=14% Similarity=0.162 Sum_probs=67.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc------------------hhh----hhhhcCCCceEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR------------------KDN----LVHHFRNPRFELI 169 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~------------------~~~----~~~~~~~~~v~~~ 169 (263)
.++.++|+|.| .|++|.++++.|+..|. +++++|...-.. .+. +.+.-...+++.+
T Consensus 18 kl~~~~VlviG-~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~ 96 (202)
T TIGR02356 18 RLLNSHVLIIG-AGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL 96 (202)
T ss_pred HhcCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46778999999 79999999999999998 888888652110 011 1111122344444
Q ss_pred Eccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 170 RHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 170 ~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
..++.+ ..+.+.|+||.+.. ++. .-..+-+.|.+.++.+|+.++.+.+|
T Consensus 97 ~~~i~~~~~~~~~~~~D~Vi~~~d---------~~~--------~r~~l~~~~~~~~ip~i~~~~~g~~G 149 (202)
T TIGR02356 97 KERVTAENLELLINNVDLVLDCTD---------NFA--------TRYLINDACVALGTPLISAAVVGFGG 149 (202)
T ss_pred hhcCCHHHHHHHHhCCCEEEECCC---------CHH--------HHHHHHHHHHHcCCCEEEEEeccCeE
Confidence 444432 24567999999872 221 12235577788888888888766665
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0038 Score=56.37 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=75.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccchhhhhhhcCC----CceEEEEccccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFRN----PRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~~~~~~~~~~----~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
++|.|.|+ |.+|..++..|+.+| .+|.+++++.+.......+.... ........|. +.+.+.|++|.+++.
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~--~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY--ADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH--HHhCCCCEEEEccCC
Confidence 36899996 999999999999999 58999998765444333222211 1223333343 357889999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
.. ....+..+.+..|+.-...+++.+++.+. .++.++.
T Consensus 78 ~~--~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tN 117 (308)
T cd05292 78 NQ--KPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTN 117 (308)
T ss_pred CC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 32 22345667788999999999998887764 4555543
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0008 Score=61.48 Aligned_cols=93 Identities=22% Similarity=0.231 Sum_probs=58.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC---eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~ 192 (263)
+++|+|.||||++|.+|++.|.++|+ ++..+.+....-+. +. +.. .+....|+.+..+.++|+||.++|..
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~-l~--~~g--~~i~v~d~~~~~~~~vDvVf~A~g~g- 74 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKE-LS--FKG--KELKVEDLTTFDFSGVDIALFSAGGS- 74 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCe-ee--eCC--ceeEEeeCCHHHHcCCCEEEECCChH-
Confidence 46899999999999999999999876 44666554222111 11 122 23444466555567899999988521
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCc
Q 024766 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (263)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~ 231 (263)
-+..+...+.+.|+.||=.|+.
T Consensus 75 -----------------~s~~~~~~~~~~G~~VIDlS~~ 96 (334)
T PRK14874 75 -----------------VSKKYAPKAAAAGAVVIDNSSA 96 (334)
T ss_pred -----------------HHHHHHHHHHhCCCEEEECCch
Confidence 1223445555567666666664
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0037 Score=55.00 Aligned_cols=110 Identities=17% Similarity=0.085 Sum_probs=76.2
Q ss_pred EEEEcCCChHHHHHHHHHHhCC----CeEEEEecCCccchhhhhhhc---CCC-ceEEEEccccccccCCCcEEEEccCC
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRG----DEVIVIDNFFTGRKDNLVHHF---RNP-RFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G----~~V~~l~r~~~~~~~~~~~~~---~~~-~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
|.|+||+|.+|..++..|+..| .+++++|++++.......+.. ... ...+...+-..+.+.+.|+||..+|.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 4689998999999999999998 699999987755544333321 111 22333333334678899999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
.... ...-......|+.-...+.+.+++.+. .++++|.
T Consensus 81 ~~~~--g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tN 120 (263)
T cd00650 81 GRKP--GMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120 (263)
T ss_pred CCCc--CCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4322 234456678899999999999888764 5555543
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0044 Score=56.01 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=76.1
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcC------CCceEEEEccccccccCCCcEEEEccC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFR------NPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~------~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
+|.|.|+ |.||..++..|+.++. +++++|...+.......+... ...+.+...| -+.+.+.|+||-.||
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~--y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD--YDDCADADIIVITAG 77 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC--HHHhCCCCEEEECCC
Confidence 4788896 9999999999998876 799999876655444433321 1234444433 356788999999998
Q ss_pred CCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 190 PASPVHYKYN--PVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 190 ~~~~~~~~~~--~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
..... ..+ -.+.+..|..-...+....++++. .++.+|-
T Consensus 78 ~~~kp--g~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 78 PSIDP--GNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred CCCCC--CCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 64222 223 367789999999999999988875 4444544
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00052 Score=61.02 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=51.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
.+++++++|+|+ |++|++++..|.+.| .+|++++|+.++..+..........+.+ ..|. ...+.+.|+|||+....
T Consensus 120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~~~~-~~~~~~~DivInaTp~g 196 (278)
T PRK00258 120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-DLEL-QEELADFDLIINATSAG 196 (278)
T ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-cccc-hhccccCCEEEECCcCC
Confidence 467889999995 999999999999999 6999999876544333222211111222 1121 24456799999997643
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00062 Score=60.24 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=50.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
.++|+++|+|+ |++|++++..|++.|++|++++|+.++..+..........+..... .+....+.|+|||+.+..
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~--~~~~~~~~DivInatp~g 189 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSM--DELPLHRVDLIINATSAG 189 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEech--hhhcccCccEEEECCCCC
Confidence 45789999996 8999999999999999999998875544333222211112222222 223345799999998753
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0042 Score=57.15 Aligned_cols=109 Identities=15% Similarity=0.177 Sum_probs=76.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCC----CceEEEE-ccccccccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN----PRFELIR-HDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~----~~v~~~~-~Dv~~~~~~~iD~Vi~~Ag 189 (263)
++|.|+|+ |.||..++..|+..|. +++++|.+.+.......+.... ....+.. .|. ..+.+.|+||-+||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy--~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY--AVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH--HHhCCCCEEEECCC
Confidence 58999995 9999999999998875 7999998766554444333211 1223322 232 34789999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
.... ...+-.+.+..|+.-...+.+..++.+. .++++|-
T Consensus 115 ~~~k--~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 115 ARQI--PGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred CCCC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 6422 2345567789999999999999888764 5666664
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0077 Score=54.76 Aligned_cols=114 Identities=11% Similarity=0.086 Sum_probs=77.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhc-----CCCceEEEE-ccccccccCCCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHF-----RNPRFELIR-HDVVEPILLEVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~-~Dv~~~~~~~iD~Vi~ 186 (263)
.+.++|.|+| +|.+|..++..++..|. +|+++|.+++.......+.. ......+.. .|. +.+.+.|+||.
T Consensus 4 ~~~~KI~IIG-aG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~--~~l~~aDiVI~ 80 (321)
T PTZ00082 4 IKRRKISLIG-SGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY--EDIAGSDVVIV 80 (321)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH--HHhCCCCEEEE
Confidence 3456899999 69999999999999995 89999987764322222111 112233332 343 46789999999
Q ss_pred ccCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 187 LACPASPVH---YKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 187 ~Ag~~~~~~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
+||...... .+.+-.+.+..|+.-...+.+.+.+.+. .++++|.
T Consensus 81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 998643221 1225567788899888888888887764 5666654
|
|
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0016 Score=57.36 Aligned_cols=68 Identities=16% Similarity=0.291 Sum_probs=45.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----c--cCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----I--LLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~--~~~iD~Vi~~Ag 189 (263)
++|+|+||||. |+.++++|.++|++|++..+.......... .....+..+..+. . -.++|+||+.+.
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~-----~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtH 74 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPI-----HQALTVHTGALDPQELREFLKRHSIDILVDATH 74 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccc-----cCCceEEECCCCHHHHHHHHHhcCCCEEEEcCC
Confidence 47999999999 999999999999999998887554322111 1111222222222 1 235999999985
Q ss_pred C
Q 024766 190 P 190 (263)
Q Consensus 190 ~ 190 (263)
+
T Consensus 75 P 75 (256)
T TIGR00715 75 P 75 (256)
T ss_pred H
Confidence 3
|
This enzyme was found to be a monomer by gel filtration. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0014 Score=56.51 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=66.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc------------------hhh----hhhhcCCCceEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR------------------KDN----LVHHFRNPRFELI 169 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~------------------~~~----~~~~~~~~~v~~~ 169 (263)
.++.++|+|.| .|++|.++++.|+..|. +++++|...-.. .+. +.+.....+++.+
T Consensus 18 ~L~~~~VlivG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~ 96 (228)
T cd00757 18 KLKNARVLVVG-AGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY 96 (228)
T ss_pred HHhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 46678999999 79999999999999998 777775431100 011 1111112345555
Q ss_pred Eccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 170 RHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 170 ~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
..++.. +.+.++|+||.+.. ++. .-..+-+.|.+.++.+|+.+..+.+|
T Consensus 97 ~~~i~~~~~~~~~~~~DvVi~~~d---------~~~--------~r~~l~~~~~~~~ip~i~~g~~g~~g 149 (228)
T cd00757 97 NERLDAENAEELIAGYDLVLDCTD---------NFA--------TRYLINDACVKLGKPLVSGAVLGFEG 149 (228)
T ss_pred cceeCHHHHHHHHhCCCEEEEcCC---------CHH--------HHHHHHHHHHHcCCCEEEEEeccCEE
Confidence 555432 34567999999882 221 12245577788888888887766555
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0031 Score=50.14 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=64.7
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc------------------hh----hhhhhcCCCceEEEEcccc
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR------------------KD----NLVHHFRNPRFELIRHDVV 174 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~------------------~~----~~~~~~~~~~v~~~~~Dv~ 174 (263)
+|+|.| .|++|.++++.|+..|. ++.++|...-.. .+ .+.+.....+++.+..++.
T Consensus 1 ~VliiG-~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~ 79 (143)
T cd01483 1 RVLLVG-LGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143)
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence 478889 59999999999999998 788887541110 01 1111112334555555544
Q ss_pred c----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 175 E----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 175 ~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
+ ..+.+.|+||.+.. + ......+.+.|++.++.++..++.+.+|
T Consensus 80 ~~~~~~~~~~~diVi~~~d---------~--------~~~~~~l~~~~~~~~i~~i~~~~~g~~g 127 (143)
T cd01483 80 EDNLDDFLDGVDLVIDAID---------N--------IAVRRALNRACKELGIPVIDAGGLGLGG 127 (143)
T ss_pred hhhHHHHhcCCCEEEECCC---------C--------HHHHHHHHHHHHHcCCCEEEEcCCCcEE
Confidence 3 34567999999882 1 2223356678888888899888876555
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00062 Score=61.80 Aligned_cols=74 Identities=16% Similarity=0.207 Sum_probs=57.7
Q ss_pred EEEEEcCCChHHHHHHHHHHh----CCCeEEEEecCCccchhhhhhhcC-----CCceEEEEcccccc-----ccCCCcE
Q 024766 118 RIVVTGGAGFVGSHLVDKLID----RGDEVIVIDNFFTGRKDNLVHHFR-----NPRFELIRHDVVEP-----ILLEVDQ 183 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~----~G~~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~~~Dv~~~-----~~~~iD~ 183 (263)
.++|.||+||-|+.++++++. .|...-+..|++++..+.+..... .....++.+|..|+ ......+
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~~~v 86 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQARV 86 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHhhhEE
Confidence 589999999999999999999 788888999988877766655431 12333888999776 3456899
Q ss_pred EEEccCCC
Q 024766 184 IYHLACPA 191 (263)
Q Consensus 184 Vi~~Ag~~ 191 (263)
|+||+|+.
T Consensus 87 ivN~vGPy 94 (423)
T KOG2733|consen 87 IVNCVGPY 94 (423)
T ss_pred EEeccccc
Confidence 99999853
|
|
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.004 Score=57.94 Aligned_cols=110 Identities=12% Similarity=0.082 Sum_probs=75.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-e----EEE----EecCCccchhhhhhhcCC-----CceEEEEccccccccCCCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-E----VIV----IDNFFTGRKDNLVHHFRN-----PRFELIRHDVVEPILLEVD 182 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~----V~~----l~r~~~~~~~~~~~~~~~-----~~v~~~~~Dv~~~~~~~iD 182 (263)
-+|.|+|++|.+|..++..|+..|. . |.+ ++++.+.......++... ..+.+.. + ....+.+.|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~-~-~y~~~kdaD 122 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGI-D-PYEVFEDAD 122 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEec-C-CHHHhCCCC
Confidence 4899999999999999999998865 2 333 366555555444443221 1222222 2 235778999
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEcC
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTST 230 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--~iV~vSS 230 (263)
+||..||... ....+-.+.+..|+.-...+....+++. . .+|.+|.
T Consensus 123 IVVitAG~pr--kpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 123 WALLIGAKPR--GPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred EEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 9999998642 2344667889999999999999998854 3 5666664
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0051 Score=55.31 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=74.2
Q ss_pred EEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccchhhhhhhcC---C-CceEEEEccccccccCCCcEEEEccCCCC
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFR---N-PRFELIRHDVVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~~~~~~~~~---~-~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~ 192 (263)
|.|.| +|.+|..++..|+..| .+++++|++.+.......++.. . ....+...+- ...+.+.|+||.+||...
T Consensus 1 i~iiG-aG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~ 78 (300)
T cd00300 1 ITIIG-AGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPR 78 (300)
T ss_pred CEEEC-CCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCC
Confidence 45788 4889999999999998 5899999876654444333221 1 1223332222 347889999999998542
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
. ...+-.+.+..|+.-...+.+..++.+. .++++|.
T Consensus 79 ~--~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 79 K--PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred C--CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 2 2345567788999999999999988864 5666654
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0027 Score=55.38 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=66.2
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch------------------h----hhhhhcCCCceEE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK------------------D----NLVHHFRNPRFEL 168 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~------------------~----~~~~~~~~~~v~~ 168 (263)
..++.++|+|.| .|++|..+++.|+..|. +++++|...-... + .+.++-...+++.
T Consensus 20 ~~L~~~~VlvvG-~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~ 98 (240)
T TIGR02355 20 EALKASRVLIVG-LGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP 98 (240)
T ss_pred HHHhCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 346778999999 79999999999999998 7888775521110 0 0111112233444
Q ss_pred EEccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 169 IRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 169 ~~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
+...+.+ +.+.+.|+||.+. ++++ .-..+-++|.+.++.+|+.++.+.+|
T Consensus 99 ~~~~i~~~~~~~~~~~~DlVvd~~---------D~~~--------~r~~ln~~~~~~~ip~v~~~~~g~~G 152 (240)
T TIGR02355 99 INAKLDDAELAALIAEHDIVVDCT---------DNVE--------VRNQLNRQCFAAKVPLVSGAAIRMEG 152 (240)
T ss_pred EeccCCHHHHHHHhhcCCEEEEcC---------CCHH--------HHHHHHHHHHHcCCCEEEEEecccEe
Confidence 4433322 2456789999888 2222 22345577888888888877665555
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0029 Score=55.28 Aligned_cols=106 Identities=13% Similarity=0.086 Sum_probs=66.1
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch----------------------hhhhhhcCCCceEE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK----------------------DNLVHHFRNPRFEL 168 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~----------------------~~~~~~~~~~~v~~ 168 (263)
..++.++|+|.|+ |++|.++++.|+..|. +++++|...-... +.+.+.-...+++.
T Consensus 28 ~~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~ 106 (245)
T PRK05690 28 EKLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIET 106 (245)
T ss_pred HHhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEE
Confidence 3567889999995 9999999999999998 7888765411110 01111112334555
Q ss_pred EEccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 169 IRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 169 ~~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
+...+.+ ..+.+.|+||.+.. ++. .-..+-+++.+.++.+|+.++.+.+|
T Consensus 107 ~~~~i~~~~~~~~~~~~DiVi~~~D---------~~~--------~r~~ln~~~~~~~ip~v~~~~~g~~G 160 (245)
T PRK05690 107 INARLDDDELAALIAGHDLVLDCTD---------NVA--------TRNQLNRACFAAKKPLVSGAAIRMEG 160 (245)
T ss_pred EeccCCHHHHHHHHhcCCEEEecCC---------CHH--------HHHHHHHHHHHhCCEEEEeeeccCCc
Confidence 5554443 24567999999871 221 12245567778887888766554444
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0031 Score=56.37 Aligned_cols=106 Identities=15% Similarity=0.218 Sum_probs=71.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch------------------h----hhhhhcCCCceEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK------------------D----NLVHHFRNPRFELI 169 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~------------------~----~~~~~~~~~~v~~~ 169 (263)
.++..+|+|.| .|++|.++++.|+..|. ++.++|...-... + .+.+.-...+++.+
T Consensus 16 kL~~s~VLIvG-~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~ 94 (286)
T cd01491 16 KLQKSNVLISG-LGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVS 94 (286)
T ss_pred HHhcCcEEEEc-CCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEE
Confidence 35667899999 79999999999999998 6777764421110 1 11111123456666
Q ss_pred EccccccccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC
Q 024766 170 RHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (263)
Q Consensus 170 ~~Dv~~~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~ 236 (263)
..++.+..+.+.|+||.+.. ++.... .+-++|.+.++.+|...+.+.+|.
T Consensus 95 ~~~~~~~~l~~fdvVV~~~~---------~~~~~~--------~in~~c~~~~ipfI~a~~~G~~G~ 144 (286)
T cd01491 95 TGPLTTDELLKFQVVVLTDA---------SLEDQL--------KINEFCHSPGIKFISADTRGLFGS 144 (286)
T ss_pred eccCCHHHHhcCCEEEEecC---------CHHHHH--------HHHHHHHHcCCEEEEEeccccEEE
Confidence 66666667788999988761 222222 344677788889999998888774
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0021 Score=59.64 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=66.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCc------------------cchhhhhhhc----CCCceEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFT------------------GRKDNLVHHF----RNPRFELI 169 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~------------------~~~~~~~~~~----~~~~v~~~ 169 (263)
.++.++|+|.| .|++|.++++.|+..|. +++++|+..- .+.+.+.+.+ ...+++.+
T Consensus 132 ~l~~~~VlvvG-~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~ 210 (376)
T PRK08762 132 RLLEARVLLIG-AGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAV 210 (376)
T ss_pred HHhcCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence 46778999998 69999999999999998 7888887510 1111111111 22334444
Q ss_pred Eccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 170 RHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 170 ~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
...+.+ ..+.+.|+||++.. ++. .-..+-++|.+.++.+|+.+..+.+|
T Consensus 211 ~~~~~~~~~~~~~~~~D~Vv~~~d---------~~~--------~r~~ln~~~~~~~ip~i~~~~~g~~g 263 (376)
T PRK08762 211 QERVTSDNVEALLQDVDVVVDGAD---------NFP--------TRYLLNDACVKLGKPLVYGAVFRFEG 263 (376)
T ss_pred eccCChHHHHHHHhCCCEEEECCC---------CHH--------HHHHHHHHHHHcCCCEEEEEeccCEE
Confidence 443332 24567999999882 221 11235577888888888887765554
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0041 Score=53.19 Aligned_cols=106 Identities=18% Similarity=0.207 Sum_probs=65.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCC---ccc--------------hhhhh----hhcCCCceEEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF---TGR--------------KDNLV----HHFRNPRFELIR 170 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~---~~~--------------~~~~~----~~~~~~~v~~~~ 170 (263)
.++.++|+|.| .|++|.++++.|+..|. +++++|... +.. .+.+. +.-...+++.+.
T Consensus 25 ~L~~~~V~ViG-~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~ 103 (212)
T PRK08644 25 KLKKAKVGIAG-AGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN 103 (212)
T ss_pred HHhCCCEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 46778999999 69999999999999998 688887651 110 01111 111223444444
Q ss_pred ccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCeEEEEcCcceecC
Q 024766 171 HDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GAKFLLTSTSEVYGD 236 (263)
Q Consensus 171 ~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~iV~vSS~~vyg~ 236 (263)
..+.+ ..+.++|+||.+. +++. .-..+.+.+.+. +..+|+.+..+-|+.
T Consensus 104 ~~i~~~~~~~~~~~~DvVI~a~---------D~~~--------~r~~l~~~~~~~~~~p~I~~~~~~~~~~ 157 (212)
T PRK08644 104 EKIDEDNIEELFKDCDIVVEAF---------DNAE--------TKAMLVETVLEHPGKKLVAASGMAGYGD 157 (212)
T ss_pred eecCHHHHHHHHcCCCEEEECC---------CCHH--------HHHHHHHHHHHhCCCCEEEeehhhccCC
Confidence 44443 3456789999886 2221 223455666666 677887766555554
|
|
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0023 Score=55.37 Aligned_cols=106 Identities=21% Similarity=0.244 Sum_probs=66.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc------------------hh-h----hhhhcCCCceEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR------------------KD-N----LVHHFRNPRFEL 168 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~------------------~~-~----~~~~~~~~~v~~ 168 (263)
.++.++|+|.| .|++|.++++.|+..|. +++++|...-+. +. . +.+.-....++.
T Consensus 24 ~L~~~~VlIiG-~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~ 102 (231)
T PRK08328 24 KLKKAKVAVVG-VGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIET 102 (231)
T ss_pred HHhCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEE
Confidence 46778999999 79999999999999998 788877442110 00 0 011112233444
Q ss_pred EEccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC
Q 024766 169 IRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (263)
Q Consensus 169 ~~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~ 236 (263)
+...+.+ ..+.+.|+||.+.- ++. .-..+-+.|++.++.+|+.++.+.||.
T Consensus 103 ~~~~~~~~~~~~~l~~~D~Vid~~d---------~~~--------~r~~l~~~~~~~~ip~i~g~~~g~~G~ 157 (231)
T PRK08328 103 FVGRLSEENIDEVLKGVDVIVDCLD---------NFE--------TRYLLDDYAHKKGIPLVHGAVEGTYGQ 157 (231)
T ss_pred EeccCCHHHHHHHHhcCCEEEECCC---------CHH--------HHHHHHHHHHHcCCCEEEEeeccCEEE
Confidence 4433332 24567899988871 221 112344677888888998888777774
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0015 Score=52.35 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=49.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~ 192 (263)
.++++++|+|+ |.+|..+++.|.+.| .+|++.+|+.+...+...+. ....+.....|. ++...++|+||++.....
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERF-GELGIAIAYLDL-EELLAEADLIINTTPVGM 93 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHH-hhcccceeecch-hhccccCCEEEeCcCCCC
Confidence 55789999996 999999999999996 68999988755443332222 111111111222 223678999999986543
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0021 Score=54.57 Aligned_cols=76 Identities=21% Similarity=0.338 Sum_probs=55.2
Q ss_pred CccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
|....+++|+++|.|| |-+|...++.|++.|++|+++.+... +.+........+.+...+.....+.+.|+||-+.
T Consensus 3 Pl~l~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~---~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT 78 (202)
T PRK06718 3 PLMIDLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPELT---ENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAAT 78 (202)
T ss_pred ceEEEcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCC---HHHHHHHhCCCEEEEecCCChhhcCCceEEEEcC
Confidence 5566789999999995 99999999999999999999875322 2222222334455655555556677889888876
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.003 Score=58.23 Aligned_cols=106 Identities=17% Similarity=0.082 Sum_probs=68.0
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch------------------h----hhhhhcCCCceEE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK------------------D----NLVHHFRNPRFEL 168 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~------------------~----~~~~~~~~~~v~~ 168 (263)
..++.++|+|.| .|++|.++++.|+..|. +++++|...-... + .+.+.-...+++.
T Consensus 24 ~~L~~~~VlivG-~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~ 102 (355)
T PRK05597 24 QSLFDAKVAVIG-AGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTV 102 (355)
T ss_pred HHHhCCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEE
Confidence 346778999999 69999999999999998 7888876521110 1 1111112334555
Q ss_pred EEccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 169 IRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 169 ~~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
+...+.. ..+.+.|+||.+.. ++ ..-..+-++|.+.++.+|+.++.+.+|
T Consensus 103 ~~~~i~~~~~~~~~~~~DvVvd~~d---------~~--------~~r~~~n~~c~~~~ip~v~~~~~g~~g 156 (355)
T PRK05597 103 SVRRLTWSNALDELRDADVILDGSD---------NF--------DTRHLASWAAARLGIPHVWASILGFDA 156 (355)
T ss_pred EEeecCHHHHHHHHhCCCEEEECCC---------CH--------HHHHHHHHHHHHcCCCEEEEEEecCeE
Confidence 5555543 34568999999881 22 112234567778888888887766555
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0067 Score=54.74 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=73.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcC-----CCceEEE-EccccccccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR-----NPRFELI-RHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~-~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
++|.|.|+ |.+|..++..|+..|. +|++++...+.......+... .....+. ..|.. .+.+.|+||-+||
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~--~~~~aDiVIitag 78 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA--DTANSDIVVITAG 78 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH--HhCCCCEEEEcCC
Confidence 47899995 9999999999999886 899999865433322221111 1111221 23443 2678999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
... ....+-.+.+..|..-...+++...+.+. .+|++|.
T Consensus 79 ~p~--~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 79 LPR--KPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred CCC--CcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 532 22334556788999999999998877754 5666665
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0012 Score=55.97 Aligned_cols=72 Identities=21% Similarity=0.184 Sum_probs=47.4
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
+..+++|+++|+|. |.+|+.+++.|.+.|++|++.+++.+...+... .+ ....+ |..+....++|+++.+|.
T Consensus 23 ~~~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~-~~---g~~~v--~~~~l~~~~~Dv~vp~A~ 94 (200)
T cd01075 23 TDSLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEEAVARAAE-LF---GATVV--APEEIYSVDADVFAPCAL 94 (200)
T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-Hc---CCEEE--cchhhccccCCEEEeccc
Confidence 34578899999995 799999999999999999998876443222211 11 12222 221222236888888774
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0039 Score=52.69 Aligned_cols=106 Identities=17% Similarity=0.290 Sum_probs=66.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch----------------------hhhhhhcCCCceEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK----------------------DNLVHHFRNPRFELI 169 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~----------------------~~~~~~~~~~~v~~~ 169 (263)
.++.++|+|.| .|++|.++++.|+..|. ++.++|...-... +.+.+.-....++..
T Consensus 18 ~L~~s~VlIiG-~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 18 RLRSARILLIG-LKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHhCcEEEEc-CCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEE
Confidence 45677999998 56699999999999998 6888775421110 001111122344444
Q ss_pred Eccccc---cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC
Q 024766 170 RHDVVE---PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (263)
Q Consensus 170 ~~Dv~~---~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~ 236 (263)
...+.+ ..+.+.|+||.+.. +... -..+-+.|.+.+..+|+.++.+.||.
T Consensus 97 ~~~~~~~~~~~~~~~dvVi~~~~---------~~~~--------~~~ln~~c~~~~ip~i~~~~~G~~G~ 149 (197)
T cd01492 97 TDDISEKPEEFFSQFDVVVATEL---------SRAE--------LVKINELCRKLGVKFYATGVHGLFGF 149 (197)
T ss_pred ecCccccHHHHHhCCCEEEECCC---------CHHH--------HHHHHHHHHHcCCCEEEEEecCCEEE
Confidence 443332 34567999997762 1211 22344678888888999888877773
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0064 Score=51.39 Aligned_cols=106 Identities=17% Similarity=0.277 Sum_probs=66.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch------------h------------hhhhhcCCCceE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK------------D------------NLVHHFRNPRFE 167 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~------------~------------~~~~~~~~~~v~ 167 (263)
.++..+|+|.| .|++|.++++.|+..|. +++++|...-... + .+.+.-...+++
T Consensus 16 ~L~~s~VlviG-~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 16 KLRSAKVLIIG-AGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLS 94 (198)
T ss_pred HHhhCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEE
Confidence 35667899999 56699999999999998 6888875411100 0 011111223445
Q ss_pred EEEcccc------ccccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC
Q 024766 168 LIRHDVV------EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (263)
Q Consensus 168 ~~~~Dv~------~~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~ 236 (263)
.+..++. +..+.+.|+||.+.. +.. ....+-+.|++.+..+|..++.+.||.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~dvVi~~~d---------~~~--------~~~~ln~~c~~~~ip~i~~~~~G~~G~ 152 (198)
T cd01485 95 IVEEDSLSNDSNIEEYLQKFTLVIATEE---------NYE--------RTAKVNDVCRKHHIPFISCATYGLIGY 152 (198)
T ss_pred EEecccccchhhHHHHHhCCCEEEECCC---------CHH--------HHHHHHHHHHHcCCCEEEEEeecCEEE
Confidence 5544442 224567899887651 121 122345778888889999988888773
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0029 Score=53.77 Aligned_cols=77 Identities=17% Similarity=0.113 Sum_probs=58.9
Q ss_pred CccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
|....+++++++|.| +|-+|..-++.|++.|++|++++.... +.+.......++.++..+.....+.+.|.||-+.
T Consensus 2 P~~l~l~gk~vlVvG-gG~va~rk~~~Ll~~ga~VtVvsp~~~---~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at 77 (205)
T TIGR01470 2 PVFANLEGRAVLVVG-GGDVALRKARLLLKAGAQLRVIAEELE---SELTLLAEQGGITWLARCFDADILEGAFLVIAAT 77 (205)
T ss_pred CeEEEcCCCeEEEEC-cCHHHHHHHHHHHHCCCEEEEEcCCCC---HHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECC
Confidence 445568899999999 699999999999999999999976433 2222333344788888887777778888888766
Q ss_pred C
Q 024766 189 C 189 (263)
Q Consensus 189 g 189 (263)
+
T Consensus 78 ~ 78 (205)
T TIGR01470 78 D 78 (205)
T ss_pred C
Confidence 3
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0058 Score=56.02 Aligned_cols=98 Identities=15% Similarity=0.214 Sum_probs=59.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccchhhhhhhcCC-C---ceEEEEccccccccCCCcEEEEccCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRN-P---RFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~~~~-~---~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
+++|.|.||||++|+++++.|.+. +.+++++.++.. ..+.+.+.... . ...+...| +....++|+||-|...
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~--~~~~~~vD~Vf~alP~ 78 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS-AGKPLSDVHPHLRGLVDLVLEPLD--PEILAGADVVFLALPH 78 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc-cCcchHHhCcccccccCceeecCC--HHHhcCCCEEEECCCc
Confidence 468999999999999999999987 568777665322 11112111110 0 11122222 2244679999998731
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCccee
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vy 234 (263)
.....++..+.+.|+++|=.|+..=+
T Consensus 79 ------------------~~~~~~v~~a~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 79 ------------------GVSMDLAPQLLEAGVKVIDLSADFRL 104 (343)
T ss_pred ------------------HHHHHHHHHHHhCCCEEEECCcccCC
Confidence 01234556666778888888876444
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0035 Score=48.86 Aligned_cols=96 Identities=18% Similarity=0.286 Sum_probs=57.0
Q ss_pred EEEEEcCCChHHHHHHHHHHh-CCCeEEE-EecCCcc-chhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLID-RGDEVIV-IDNFFTG-RKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPV 194 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~-~G~~V~~-l~r~~~~-~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~ 194 (263)
+|+|.|++|-+|+.+++.+.+ .+.++.. +++..+. ..+...+..+.........|-.+..+.++|+||.+.-
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~----- 76 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTN----- 76 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCC-----
Confidence 799999999999999999999 5667654 4554422 2222333322222222223444556666999998871
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCc
Q 024766 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (263)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~ 231 (263)
+ ..+...++.+.++++.+|.-+|.
T Consensus 77 -----p--------~~~~~~~~~~~~~g~~~ViGTTG 100 (124)
T PF01113_consen 77 -----P--------DAVYDNLEYALKHGVPLVIGTTG 100 (124)
T ss_dssp -----H--------HHHHHHHHHHHHHT-EEEEE-SS
T ss_pred -----h--------HHhHHHHHHHHhCCCCEEEECCC
Confidence 1 23445777788887777765554
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0061 Score=48.25 Aligned_cols=89 Identities=25% Similarity=0.349 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc---CCCcEEEEccCCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL---LEVDQIYHLACPA 191 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~---~~iD~Vi~~Ag~~ 191 (263)
+++++++.| +| -|.+++..|.+.|++|+++|.++...+.. ....+.++..|++++.+ .+.|.|+-.=.
T Consensus 16 ~~~kileIG-~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a-----~~~~~~~v~dDlf~p~~~~y~~a~liysirp-- 86 (134)
T PRK04148 16 KNKKIVELG-IG-FYFKVAKKLKESGFDVIVIDINEKAVEKA-----KKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP-- 86 (134)
T ss_pred cCCEEEEEE-ec-CCHHHHHHHHHCCCEEEEEECCHHHHHHH-----HHhCCeEEECcCCCCCHHHHhcCCEEEEeCC--
Confidence 456899999 56 78889999999999999999876643222 22357899999998754 57888876541
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL 227 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~ 227 (263)
+.+. ...+++.|++.++.+++
T Consensus 87 --------p~el-------~~~~~~la~~~~~~~~i 107 (134)
T PRK04148 87 --------PRDL-------QPFILELAKKINVPLII 107 (134)
T ss_pred --------CHHH-------HHHHHHHHHHcCCCEEE
Confidence 1121 23588999999885443
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0056 Score=53.07 Aligned_cols=108 Identities=14% Similarity=0.121 Sum_probs=65.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc------------------hhh----hhhhcCCCceEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR------------------KDN----LVHHFRNPRFELI 169 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~------------------~~~----~~~~~~~~~v~~~ 169 (263)
.++.++|+|.| .|++|+++++.|++.|. +++++|...-.. .+. +.++-...+++.+
T Consensus 8 ~L~~~~VlVvG-~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~ 86 (231)
T cd00755 8 KLRNAHVAVVG-LGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAV 86 (231)
T ss_pred HHhCCCEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEe
Confidence 35677899999 79999999999999998 888877541110 000 1111122344444
Q ss_pred Eccccc----ccc-CCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCC
Q 024766 170 RHDVVE----PIL-LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238 (263)
Q Consensus 170 ~~Dv~~----~~~-~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~ 238 (263)
...+.. ..+ .++|+||.+.. +. ..-..+.+.|.+.+..+|...+.+-..++.
T Consensus 87 ~~~i~~~~~~~l~~~~~D~VvdaiD---------~~--------~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~ 143 (231)
T cd00755 87 EEFLTPDNSEDLLGGDPDFVVDAID---------SI--------RAKVALIAYCRKRKIPVISSMGAGGKLDPT 143 (231)
T ss_pred eeecCHhHHHHHhcCCCCEEEEcCC---------CH--------HHHHHHHHHHHHhCCCEEEEeCCcCCCCCC
Confidence 444332 222 35899999871 22 122346678888877777766655444443
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.005 Score=55.67 Aligned_cols=101 Identities=16% Similarity=0.252 Sum_probs=64.6
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch------------------hh----hhhhcCCCceEEEEcccc
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK------------------DN----LVHHFRNPRFELIRHDVV 174 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~------------------~~----~~~~~~~~~v~~~~~Dv~ 174 (263)
+|+|.| .|++|.++++.|+..|. ++.++|...-... +. +.+.-...+++.+..++.
T Consensus 1 kVlIVG-aGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~ 79 (312)
T cd01489 1 KVLVVG-AGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312)
T ss_pred CEEEEC-CCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence 478989 69999999999999998 7888775421111 00 111112335556666665
Q ss_pred c-----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC
Q 024766 175 E-----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (263)
Q Consensus 175 ~-----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~ 236 (263)
+ ..+.+.|+||.+. ++. ..-..+-+.|...++.+|...+.+.+|.
T Consensus 80 ~~~~~~~f~~~~DvVv~a~---------Dn~--------~ar~~in~~c~~~~ip~I~~gt~G~~G~ 129 (312)
T cd01489 80 DPDFNVEFFKQFDLVFNAL---------DNL--------AARRHVNKMCLAADVPLIESGTTGFLGQ 129 (312)
T ss_pred CccchHHHHhcCCEEEECC---------CCH--------HHHHHHHHHHHHCCCCEEEEecCcceeE
Confidence 4 3456799999887 122 2223345667777778888888777663
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0078 Score=57.00 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=73.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhC---CC----eEEEEecC--CccchhhhhhhcC-----CCceEEEEccccccccCCCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDR---GD----EVIVIDNF--FTGRKDNLVHHFR-----NPRFELIRHDVVEPILLEVD 182 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~---G~----~V~~l~r~--~~~~~~~~~~~~~-----~~~v~~~~~Dv~~~~~~~iD 182 (263)
-+|+||||+|.||.+|+-.++.- |. .+++++.. .+.......++.. ...+.+. +-....+.+.|
T Consensus 124 ~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~--~~~~ea~~daD 201 (452)
T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT--TDLDVAFKDAH 201 (452)
T ss_pred eEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE--ECCHHHhCCCC
Confidence 48999999999999999999973 42 34555652 3333333332221 1123333 22346788999
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC---eEEEEcC
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA---KFLLTST 230 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~---~iV~vSS 230 (263)
+||-.||.. .....+-.+.++.|..-...+.++..+.+. +|+.+.|
T Consensus 202 vvIitag~p--rk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t 250 (452)
T cd05295 202 VIVLLDDFL--IKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR 250 (452)
T ss_pred EEEECCCCC--CCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence 999999853 223345677889999999999999887763 6666654
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0028 Score=56.59 Aligned_cols=74 Identities=18% Similarity=0.123 Sum_probs=50.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcC-CCceEEEEccccccccCCCcEEEEcc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
.++++++|.| +|+.|++++..|++.|. +|++++|+.++.++...+... ...+.+...+-....+.+.|+|||+.
T Consensus 125 ~~~k~vlIlG-aGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 125 ASLERVVQLG-AGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHAT 200 (284)
T ss_pred ccCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECC
Confidence 5678999999 68899999999999998 799998876544433322211 12233333332233456799999994
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0054 Score=54.75 Aligned_cols=107 Identities=13% Similarity=0.024 Sum_probs=65.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch------------------h----hhhhhcCCCceEE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK------------------D----NLVHHFRNPRFEL 168 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~------------------~----~~~~~~~~~~v~~ 168 (263)
..++..+|+|.| .|++|..+++.|+..|. ++.++|...-... + .+.++-...+++.
T Consensus 23 ~kL~~s~VlIvG-~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~ 101 (287)
T PRK08223 23 QRLRNSRVAIAG-LGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRA 101 (287)
T ss_pred HHHhcCCEEEEC-CCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEE
Confidence 346778999999 79999999999999998 7777765411110 0 0111112234555
Q ss_pred EEccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCccee
Q 024766 169 IRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234 (263)
Q Consensus 169 ~~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vy 234 (263)
+...+.+ +.+.+.|+||.+. +++ ++..-..+-++|.+.++.+|+.+..+..
T Consensus 102 ~~~~l~~~n~~~ll~~~DlVvD~~---------D~~------~~~~r~~ln~~c~~~~iP~V~~~~~g~~ 156 (287)
T PRK08223 102 FPEGIGKENADAFLDGVDVYVDGL---------DFF------EFDARRLVFAACQQRGIPALTAAPLGMG 156 (287)
T ss_pred EecccCccCHHHHHhCCCEEEECC---------CCC------cHHHHHHHHHHHHHcCCCEEEEeccCCe
Confidence 5544443 3456799998666 111 1112234567788888888887664433
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0061 Score=58.17 Aligned_cols=77 Identities=21% Similarity=0.189 Sum_probs=53.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
.+++++|+|.| .|++|.++++.|.++|++|+++++..........+.+....+.+...+... ...++|.||...|+.
T Consensus 13 ~~~~~~v~viG-~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s~Gi~ 89 (480)
T PRK01438 13 DWQGLRVVVAG-LGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTSPGWR 89 (480)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEECCCcC
Confidence 35678999999 599999999999999999999986543322222222233345555444332 345689999998864
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.005 Score=57.52 Aligned_cols=106 Identities=17% Similarity=0.126 Sum_probs=67.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch------------------hh----hhhhcCCCceEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK------------------DN----LVHHFRNPRFELI 169 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~------------------~~----~~~~~~~~~v~~~ 169 (263)
.++..+|+|.| .|++|.++++.|+..|. ++.++|...-... +. +.+.-...+++.+
T Consensus 39 ~L~~~~VlviG-~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~ 117 (392)
T PRK07878 39 RLKNARVLVIG-AGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH 117 (392)
T ss_pred HHhcCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence 45777999999 79999999999999998 7777765411100 00 1111112344445
Q ss_pred Eccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC
Q 024766 170 RHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (263)
Q Consensus 170 ~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~ 236 (263)
...+.. ..+.+.|+||.+. +++ ..-..+-++|.+.++.+|+.+..+.+|.
T Consensus 118 ~~~i~~~~~~~~~~~~D~Vvd~~---------d~~--------~~r~~ln~~~~~~~~p~v~~~~~g~~G~ 171 (392)
T PRK07878 118 EFRLDPSNAVELFSQYDLILDGT---------DNF--------ATRYLVNDAAVLAGKPYVWGSIYRFEGQ 171 (392)
T ss_pred eccCChhHHHHHHhcCCEEEECC---------CCH--------HHHHHHHHHHHHcCCCEEEEEeccCEEE
Confidence 544443 3456789999877 122 1222355677788888998888777774
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0076 Score=55.13 Aligned_cols=94 Identities=20% Similarity=0.216 Sum_probs=57.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC---eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~ 192 (263)
+.+|.|+||||++|.+|++.|.++++ ++..+... +...+.+. +....+.+...|. ..+.++|++|-+++..
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~aG~~l~--~~~~~l~~~~~~~--~~~~~vD~vFla~p~~- 77 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESAGHSVP--FAGKNLRVREVDS--FDFSQVQLAFFAAGAA- 77 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccCCCeec--cCCcceEEeeCCh--HHhcCCCEEEEcCCHH-
Confidence 36899999999999999999998766 33344322 21111111 1222333333332 2357899999988410
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
-...++..+.+.|+++|=.|+..
T Consensus 78 -----------------~s~~~v~~~~~~G~~VIDlS~~f 100 (336)
T PRK05671 78 -----------------VSRSFAEKARAAGCSVIDLSGAL 100 (336)
T ss_pred -----------------HHHHHHHHHHHCCCeEEECchhh
Confidence 01236677777787877777764
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0025 Score=54.73 Aligned_cols=112 Identities=15% Similarity=0.131 Sum_probs=78.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccccCCCcEEEEccCCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~ 192 (263)
.+-...++.|+.||.|.++++.-...+.+|-.+.+++.+.-....... ..........|..+....++..++-++|-..
T Consensus 50 ve~e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~~l~sw~~~vswh~gnsfssn~~k~~l~g~t~v~e~~ggfg 129 (283)
T KOG4288|consen 50 VEVEWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQTLSSWPTYVSWHRGNSFSSNPNKLKLSGPTFVYEMMGGFG 129 (283)
T ss_pred hhHHHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcchhhCCCcccchhhccccccCcchhhhcCCcccHHHhcCcc
Confidence 333468899999999999999999999999999887553322211110 1123444555555666667777777775322
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCc
Q 024766 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTS 231 (263)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~ 231 (263)
+...+..+|-....+-.+++++.|+ +|++||-.
T Consensus 130 ------n~~~m~~ing~ani~a~kaa~~~gv~~fvyISa~ 163 (283)
T KOG4288|consen 130 ------NIILMDRINGTANINAVKAAAKAGVPRFVYISAH 163 (283)
T ss_pred ------chHHHHHhccHhhHHHHHHHHHcCCceEEEEEhh
Confidence 3445557787777788899999997 99999874
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0029 Score=56.40 Aligned_cols=76 Identities=17% Similarity=0.033 Sum_probs=49.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCC-CceEEEEc-cccccccCCCcEEEEccCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRN-PRFELIRH-DVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~~-Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
+++++++|.| +|+.|++++..|++.|. +|+++.|+.++.++ +.+.+.. ..+..+.. +-....+.+.|+|||+...
T Consensus 123 ~~~k~vlvlG-aGGaarai~~aL~~~G~~~i~I~nRt~~ka~~-La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 123 LAGFRGLVIG-AGGTSRAAVYALASLGVTDITVINRNPDKLSR-LVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred cCCceEEEEc-CcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHH-HHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence 5688999999 69999999999999997 78888887554433 3322221 12211111 1112344679999999865
Q ss_pred C
Q 024766 191 A 191 (263)
Q Consensus 191 ~ 191 (263)
.
T Consensus 201 g 201 (282)
T TIGR01809 201 D 201 (282)
T ss_pred C
Confidence 3
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0027 Score=61.58 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=48.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcc-ccccccCCCcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHD-VVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D-v~~~~~~~iD~Vi~~Ag~~ 191 (263)
.+++|+++|+|+ |++|++++..|++.|++|++++|+.++..+ +.+.+.. ..+..+ ..+......|+|||+..+.
T Consensus 376 ~~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i~nR~~e~a~~-la~~l~~---~~~~~~~~~~~~~~~~diiINtT~vG 450 (529)
T PLN02520 376 PLAGKLFVVIGA-GGAGKALAYGAKEKGARVVIANRTYERAKE-LADAVGG---QALTLADLENFHPEEGMILANTTSVG 450 (529)
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHH-HHHHhCC---ceeeHhHhhhhccccCeEEEecccCC
Confidence 467889999997 899999999999999999988886443332 2222221 112222 1111223578899887654
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0038 Score=55.76 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=33.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEec
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN 148 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r 148 (263)
..++||+++|.|++|.+|+.++..|+++|+.|+++.+
T Consensus 155 i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 155 IELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4579999999999889999999999999999888876
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.017 Score=51.90 Aligned_cols=107 Identities=14% Similarity=0.080 Sum_probs=70.3
Q ss_pred EEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhc-----CCCceEEEE-ccccccccCCCcEEEEccCCC
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHF-----RNPRFELIR-HDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~-~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
|.|+|+ |.+|..++..|+..|. +|+++|++++.......+.. ......+.. .| ...+.+.|+||.++|..
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d--~~~l~dADiVIit~g~p 77 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTND--YEDIAGSDVVVITAGIP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCC--HHHhCCCCEEEEecCCC
Confidence 468896 9999999999998876 99999998654322221111 111222222 34 23578899999999854
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
.. ...+-.+.+..|+.-...+++.+.+... .+|++|.
T Consensus 78 ~~--~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sN 116 (300)
T cd01339 78 RK--PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTN 116 (300)
T ss_pred CC--cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 32 2344456777888888888888877764 4455553
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0025 Score=56.98 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=49.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
.+.+++++|+| .|.+|+.+++.|...|.+|++.+|+.+.... ..+ .....+..+-.+..+.+.|+||++.
T Consensus 148 ~l~gk~v~IiG-~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~-~~~----~g~~~~~~~~l~~~l~~aDiVint~ 217 (287)
T TIGR02853 148 TIHGSNVMVLG-FGRTGMTIARTFSALGARVFVGARSSADLAR-ITE----MGLIPFPLNKLEEKVAEIDIVINTI 217 (287)
T ss_pred CCCCCEEEEEc-ChHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHH----CCCeeecHHHHHHHhccCCEEEECC
Confidence 56889999999 5889999999999999999999886543221 111 1122333333344567899999987
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.017 Score=51.95 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=73.5
Q ss_pred EEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcC-----CCceEEEEccccccccCCCcEEEEccCCCCC
Q 024766 121 VTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFR-----NPRFELIRHDVVEPILLEVDQIYHLACPASP 193 (263)
Q Consensus 121 VTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~ 193 (263)
|.| +|.||..++..|+..+. ++.++|+..+.......++.. ...+.+...| -+.+.+.|+||-.||..-.
T Consensus 1 iIG-aG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~--~~~~~daDivVitag~~rk 77 (299)
T TIGR01771 1 IIG-AGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGD--YSDCKDADLVVITAGAPQK 77 (299)
T ss_pred CCC-cCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCC--HHHHCCCCEEEECCCCCCC
Confidence 356 59999999999998875 799999876655544443321 1233333222 3577889999999986432
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
...+-.+.++.|..-...+.+.+++++. .++.+|.
T Consensus 78 --~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 78 --PGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 2345567889999999999999888764 5666664
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.013 Score=53.84 Aligned_cols=96 Identities=17% Similarity=0.256 Sum_probs=56.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcC--------C--CceEEEEccccccccCCCcEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR--------N--PRFELIRHDVVEPILLEVDQI 184 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~--------~--~~v~~~~~Dv~~~~~~~iD~V 184 (263)
+.+|.|+||+|++|++|++.|.+... ++..+.++............. . ..+.+...|. ..+.++|+|
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~DvV 80 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP--EAVDDVDIV 80 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH--HHhcCCCEE
Confidence 46899999999999999999998765 787774443322222221110 0 1111111121 223579999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCc
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~ 231 (263)
+-+.+. ++ ...+.+.+.+.|+++|-.|+.
T Consensus 81 f~a~p~----------------~~--s~~~~~~~~~~G~~vIDls~~ 109 (349)
T PRK08664 81 FSALPS----------------DV--AGEVEEEFAKAGKPVFSNASA 109 (349)
T ss_pred EEeCCh----------------hH--HHHHHHHHHHCCCEEEECCch
Confidence 887631 11 123446677778877666664
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0073 Score=55.97 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=67.1
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch------------------hh----hhhhcCCCceEE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK------------------DN----LVHHFRNPRFEL 168 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~------------------~~----~~~~~~~~~v~~ 168 (263)
..++.++|+|.| .|++|.++++.|+..|. +++++|...-... +. +.+.....+++.
T Consensus 37 ~~l~~~~VliiG-~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~ 115 (370)
T PRK05600 37 ERLHNARVLVIG-AGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNA 115 (370)
T ss_pred HHhcCCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEE
Confidence 346778999999 79999999999999998 8888876511100 00 111112234555
Q ss_pred EEccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 169 IRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 169 ~~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
+...+.. +.+.++|+||.|. ++. ..-..+-+.|.+.++.+|+.+..+-+|
T Consensus 116 ~~~~i~~~~~~~~~~~~DlVid~~---------Dn~--------~~r~~in~~~~~~~iP~v~~~~~g~~G 169 (370)
T PRK05600 116 LRERLTAENAVELLNGVDLVLDGS---------DSF--------ATKFLVADAAEITGTPLVWGTVLRFHG 169 (370)
T ss_pred eeeecCHHHHHHHHhCCCEEEECC---------CCH--------HHHHHHHHHHHHcCCCEEEEEEecCEE
Confidence 5544443 3567799999988 222 222244566777777788777655555
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0086 Score=55.01 Aligned_cols=97 Identities=13% Similarity=0.173 Sum_probs=58.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHhC-CCeEEEE-ecCCccchhhhhhhcC---CC-ceEEEEccccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVI-DNFFTGRKDNLVHHFR---NP-RFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l-~r~~~~~~~~~~~~~~---~~-~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
++|.|.||||++|.++++.|.+. +.+++.+ +++.. ..+.+..... .. ...+...|.. ....++|+||-|.+.
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~s-agk~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRES-AGKPVSEVHPHLRGLVDLNLEPIDEE-EIAEDADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchh-cCCChHHhCccccccCCceeecCCHH-HhhcCCCEEEECCCc
Confidence 47999999999999999999987 4577744 43321 1111221111 11 1122222321 222479999998842
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcce
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~v 233 (263)
. ....++..+.+.|+++|=.|+..=
T Consensus 79 ~------------------~s~~~~~~~~~~G~~VIDlS~~fR 103 (346)
T TIGR01850 79 G------------------VSAELAPELLAAGVKVIDLSADFR 103 (346)
T ss_pred h------------------HHHHHHHHHHhCCCEEEeCChhhh
Confidence 1 234566666677888998888643
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0027 Score=57.27 Aligned_cols=74 Identities=12% Similarity=0.205 Sum_probs=53.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcc---ccccccCCCcEEEEccCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHD---VVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D---v~~~~~~~iD~Vi~~Ag~~~ 192 (263)
..++|-||+||.|.-++++|+.+|..-.+..|+..+........ ..++..+.++ ..+......++|+||+|+..
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~L--G~~~~~~p~~~p~~~~~~~~~~~VVlncvGPyt 83 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASL--GPEAAVFPLGVPAALEAMASRTQVVLNCVGPYT 83 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhc--CccccccCCCCHHHHHHHHhcceEEEecccccc
Confidence 37899999999999999999999988877777655544332222 3333344433 55667788999999999754
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.01 Score=51.51 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=62.6
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch------------------hh----hhhhcCCCceEEEEcccc
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK------------------DN----LVHHFRNPRFELIRHDVV 174 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~------------------~~----~~~~~~~~~v~~~~~Dv~ 174 (263)
+|+|.| .|++|.++++.|+..|. ++.++|...-... +. +.+.....++..+..++.
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 478888 79999999999999998 7888775411110 00 111112234555555552
Q ss_pred ------ccccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 175 ------EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 175 ------~~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
+..+.++|+||.+. .|+..-..+-+.+...++.+|..++.+.+|
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~-----------------Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G 129 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNAL-----------------DNIIARRYVNGMLIFLIVPLIESGTEGFKG 129 (234)
T ss_pred hhhhchHHHHhCCCEEEECC-----------------CCHHHHHHHHHHHHHcCCCEEEEcccCCce
Confidence 23456799999876 122333345566777777888877766665
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.013 Score=51.84 Aligned_cols=108 Identities=18% Similarity=0.174 Sum_probs=64.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc----------hh--------hhhhhc--CCCc--eEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR----------KD--------NLVHHF--RNPR--FELI 169 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~----------~~--------~~~~~~--~~~~--v~~~ 169 (263)
.++.++|+|.| .|++|.++++.|++.|. +++++|...-.. .+ .+.+.+ -++. +..+
T Consensus 27 kL~~s~VlVvG-~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i 105 (268)
T PRK15116 27 LFADAHICVVG-IGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV 105 (268)
T ss_pred HhcCCCEEEEC-cCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE
Confidence 46778999999 79999999999999995 888887541110 00 111111 1223 3333
Q ss_pred Ecccc----cccc-CCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCC
Q 024766 170 RHDVV----EPIL-LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPL 238 (263)
Q Consensus 170 ~~Dv~----~~~~-~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~ 238 (263)
..-+. +..+ .+.|+||.+.. + +..-..+.+.|.+.+..+|.+..++..-+|.
T Consensus 106 ~~~i~~e~~~~ll~~~~D~VIdaiD---------~--------~~~k~~L~~~c~~~~ip~I~~gGag~k~dp~ 162 (268)
T PRK15116 106 DDFITPDNVAEYMSAGFSYVIDAID---------S--------VRPKAALIAYCRRNKIPLVTTGGAGGQIDPT 162 (268)
T ss_pred ecccChhhHHHHhcCCCCEEEEcCC---------C--------HHHHHHHHHHHHHcCCCEEEECCcccCCCCC
Confidence 22111 1223 36899998872 1 1122246778888877888776666555554
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.014 Score=48.34 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=60.4
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCC---ccc--------------hhhhh----hhcCCCceEEEEccccc
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF---TGR--------------KDNLV----HHFRNPRFELIRHDVVE 175 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~---~~~--------------~~~~~----~~~~~~~v~~~~~Dv~~ 175 (263)
+|+|.| .|++|.++++.|+..|. +++++|... +.. .+.+. +.-...+++.+...+..
T Consensus 1 ~VlViG-~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAG-AGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 478889 69999999999999998 699888763 110 01111 11122344444444433
Q ss_pred ----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CCeEEEEcCcceecC
Q 024766 176 ----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GAKFLLTSTSEVYGD 236 (263)
Q Consensus 176 ----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~~iV~vSS~~vyg~ 236 (263)
..+.+.|+||.+. +++ ..-..+.+.+.+. ++.+|+-+..+-||.
T Consensus 80 ~~~~~~l~~~DlVi~~~---------d~~--------~~r~~i~~~~~~~~~ip~i~~~~~~~~~~ 128 (174)
T cd01487 80 NNLEGLFGDCDIVVEAF---------DNA--------ETKAMLAESLLGNKNKPVVCASGMAGFGD 128 (174)
T ss_pred hhHHHHhcCCCEEEECC---------CCH--------HHHHHHHHHHHHHCCCCEEEEehhhccCC
Confidence 3466799999986 122 1122355666555 667777655555553
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0097 Score=55.55 Aligned_cols=107 Identities=14% Similarity=0.078 Sum_probs=68.1
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch----------------------hhhhhhcCCCceEE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK----------------------DNLVHHFRNPRFEL 168 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~----------------------~~~~~~~~~~~v~~ 168 (263)
..++..+|+|.| .|++|.++++.|+..|. +++++|...-... +.+.+.-...+++.
T Consensus 34 ~~L~~~~VlivG-~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~ 112 (390)
T PRK07411 34 KRLKAASVLCIG-TGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL 112 (390)
T ss_pred HHHhcCcEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence 356778999999 79999999999999998 7777765411110 01111112335555
Q ss_pred EEccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC
Q 024766 169 IRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (263)
Q Consensus 169 ~~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~ 236 (263)
+...+.. ..+.+.|+||.|.. ++. .-..+-++|.+.++.+|+.+..+-||.
T Consensus 113 ~~~~~~~~~~~~~~~~~D~Vvd~~d---------~~~--------~r~~ln~~~~~~~~p~v~~~~~g~~g~ 167 (390)
T PRK07411 113 YETRLSSENALDILAPYDVVVDGTD---------NFP--------TRYLVNDACVLLNKPNVYGSIFRFEGQ 167 (390)
T ss_pred EecccCHHhHHHHHhCCCEEEECCC---------CHH--------HHHHHHHHHHHcCCCEEEEEEccCEEE
Confidence 5555544 24567999999882 222 112344667777778888777666663
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.011 Score=54.16 Aligned_cols=95 Identities=16% Similarity=0.137 Sum_probs=56.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC---eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
...+|.|.||||++|.+|++.|.++++ ++..+..... ..+.... .. .++...++..+.+.++|+||.+++..
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rs-aGk~~~~--~~--~~~~v~~~~~~~~~~~D~vf~a~p~~ 80 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARS-AGKKVTF--EG--RDYTVEELTEDSFDGVDIALFSAGGS 80 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCC-CCCeeee--cC--ceeEEEeCCHHHHcCCCEEEECCCcH
Confidence 345899999999999999999999876 3333322211 1111111 11 22333344444557899999888521
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
....+...+.+.|+++|=.|+..
T Consensus 81 ------------------~s~~~~~~~~~~g~~VIDlS~~f 103 (344)
T PLN02383 81 ------------------ISKKFGPIAVDKGAVVVDNSSAF 103 (344)
T ss_pred ------------------HHHHHHHHHHhCCCEEEECCchh
Confidence 11234445556677888777764
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0091 Score=48.59 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=52.9
Q ss_pred CCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEc
Q 024766 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 108 ~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
.|...++++++|+|.| +|-+|...++.|++.|++|++++. + ..+.+.+. ..+.+...+..+..+.+.|+||-+
T Consensus 5 ~P~~l~l~~~~vlVvG-GG~va~rka~~Ll~~ga~V~VIsp--~-~~~~l~~l---~~i~~~~~~~~~~dl~~a~lViaa 77 (157)
T PRK06719 5 YPLMFNLHNKVVVIIG-GGKIAYRKASGLKDTGAFVTVVSP--E-ICKEMKEL---PYITWKQKTFSNDDIKDAHLIYAA 77 (157)
T ss_pred cceEEEcCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcC--c-cCHHHHhc---cCcEEEecccChhcCCCceEEEEC
Confidence 5677789999999999 699999999999999999999852 2 22222221 234444444455566778888876
Q ss_pred c
Q 024766 188 A 188 (263)
Q Consensus 188 A 188 (263)
.
T Consensus 78 T 78 (157)
T PRK06719 78 T 78 (157)
T ss_pred C
Confidence 6
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.013 Score=55.80 Aligned_cols=78 Identities=15% Similarity=0.182 Sum_probs=53.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
.+.+++|+|.| .|..|.++++.|.+.|++|.+.|+............+....+.+...+.....+.++|.||...|+.
T Consensus 11 ~~~~~~i~v~G-~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~ 88 (458)
T PRK01710 11 FIKNKKVAVVG-IGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMR 88 (458)
T ss_pred hhcCCeEEEEc-ccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCC
Confidence 35678999999 7999999999999999999999976432211111112223455555444334456799999998764
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0054 Score=57.65 Aligned_cols=76 Identities=13% Similarity=0.202 Sum_probs=52.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
.+.+++++|.| +|++|+.+++.|.+.|. +++++.|+.++. +.+.+.++. ...+..|-....+.+.|+||++.+..
T Consensus 178 ~l~~kkvlviG-aG~~a~~va~~L~~~g~~~I~V~nRt~~ra-~~La~~~~~--~~~~~~~~l~~~l~~aDiVI~aT~a~ 253 (414)
T PRK13940 178 NISSKNVLIIG-AGQTGELLFRHVTALAPKQIMLANRTIEKA-QKITSAFRN--ASAHYLSELPQLIKKADIIIAAVNVL 253 (414)
T ss_pred CccCCEEEEEc-CcHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHHhcC--CeEecHHHHHHHhccCCEEEECcCCC
Confidence 36789999999 59999999999999997 677777764433 333333221 23333344445677899999998743
Q ss_pred C
Q 024766 192 S 192 (263)
Q Consensus 192 ~ 192 (263)
.
T Consensus 254 ~ 254 (414)
T PRK13940 254 E 254 (414)
T ss_pred C
Confidence 3
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0064 Score=50.10 Aligned_cols=38 Identities=26% Similarity=0.354 Sum_probs=33.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
.+.+|+++|.|+++.+|..+++.|.++|.+|.++.|..
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 57899999999866789999999999999998888753
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0033 Score=57.26 Aligned_cols=73 Identities=21% Similarity=0.156 Sum_probs=48.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc---cC--CCcEEEEccC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI---LL--EVDQIYHLAC 189 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~---~~--~iD~Vi~~Ag 189 (263)
+.+|||+||+|++|...+..+...|+.++++..+.++.+ .+.+.-...-+++.+.|+.+.. .. ++|+|+...|
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG 220 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVG 220 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCC
Confidence 779999999999999988888888977666665544333 2222211223344455555542 22 5999999886
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0037 Score=57.25 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=42.2
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEE---EEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVI---VIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~---~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
+|.|.||+|++|.+|++.|.++++.++ .+.+....- ..+. +.. .+....|+....+.++|++|-++|
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g-~~~~--~~~--~~~~~~~~~~~~~~~~D~v~~a~g 70 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAG-RKVT--FKG--KELEVNEAKIESFEGIDIALFSAG 70 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCC-Ceee--eCC--eeEEEEeCChHHhcCCCEEEECCC
Confidence 478999999999999999999877543 333432211 1111 112 344444554445567888888776
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0075 Score=52.00 Aligned_cols=69 Identities=20% Similarity=0.331 Sum_probs=52.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~~iD~Vi~~Ag 189 (263)
|+++|.| .|-+|..+++.|.++|++|++++++++...+... ....+..+.+|-+++ ...+.|+++-..+
T Consensus 1 m~iiIiG-~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~---~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIG-AGRVGRSVARELSEEGHNVVLIDRDEERVEEFLA---DELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEEC-CcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhh---hhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 4788888 7999999999999999999999986554443222 124677888888876 2456898888775
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.013 Score=52.81 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=31.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~ 152 (263)
++|.|+| +|.+|..++..|++.|++|++.+++.+.
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~~ 37 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPAA 37 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHHH
Confidence 4799999 8999999999999999999999987543
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.021 Score=50.18 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=40.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhC-CCeEEEEe-cCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVID-NFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~-r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
++|.|+|++|.+|+.+++.+.+. +.++..+. +..+.... . ....+...+-.+..+.++|+||.++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~-~------~~~~i~~~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG-Q------GALGVAITDDLEAVLADADVLIDFT 68 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc-c------CCCCccccCCHHHhccCCCEEEECC
Confidence 58999999999999999988874 56776644 33322111 1 1111111122233345799999888
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.006 Score=51.79 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=33.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH 160 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~ 160 (263)
+|++.|.| +|-||..|+++|++.|++|++..|+.++..+...+.
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~ 44 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAA 44 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHh
Confidence 34566655 999999999999999999999877766554444433
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.039 Score=41.46 Aligned_cols=95 Identities=21% Similarity=0.270 Sum_probs=58.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
.++++++++|.|| |-+|..-++.|++.|++|+++.... +... ..+.+..-+.. ..+.+.|.||-+.+
T Consensus 3 l~l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~----~~~~-----~~i~~~~~~~~-~~l~~~~lV~~at~-- 69 (103)
T PF13241_consen 3 LDLKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI----EFSE-----GLIQLIRREFE-EDLDGADLVFAATD-- 69 (103)
T ss_dssp E--TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE----HHHH-----TSCEEEESS-G-GGCTTESEEEE-SS--
T ss_pred EEcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch----hhhh-----hHHHHHhhhHH-HHHhhheEEEecCC--
Confidence 3578899999995 9999999999999999999998653 1111 23444444443 55777898886552
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
+. ..| ..+.+.|++.+ .+|+++..-.++
T Consensus 70 -------d~----~~n----~~i~~~a~~~~-i~vn~~D~p~~~ 97 (103)
T PF13241_consen 70 -------DP----ELN----EAIYADARARG-ILVNVVDDPELC 97 (103)
T ss_dssp --------H----HHH----HHHHHHHHHTT-SEEEETT-CCCC
T ss_pred -------CH----HHH----HHHHHHHhhCC-EEEEECCCcCCC
Confidence 11 122 24566666654 677776654443
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.008 Score=49.78 Aligned_cols=72 Identities=17% Similarity=0.088 Sum_probs=47.5
Q ss_pred CccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
.....+.+++|.|.| .|-||+++++.|...|.+|++.+|........ .. ..+ ..+-.++.+.+.|+|+.+.
T Consensus 29 ~~~~~l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~-~~----~~~---~~~~l~ell~~aDiv~~~~ 99 (178)
T PF02826_consen 29 FPGRELRGKTVGIIG-YGRIGRAVARRLKAFGMRVIGYDRSPKPEEGA-DE----FGV---EYVSLDELLAQADIVSLHL 99 (178)
T ss_dssp TTBS-STTSEEEEES-TSHHHHHHHHHHHHTT-EEEEEESSCHHHHHH-HH----TTE---EESSHHHHHHH-SEEEE-S
T ss_pred CCccccCCCEEEEEE-EcCCcCeEeeeeecCCceeEEecccCChhhhc-cc----ccc---eeeehhhhcchhhhhhhhh
Confidence 344568899999999 89999999999999999999999875543201 10 111 2233445566678887766
Q ss_pred C
Q 024766 189 C 189 (263)
Q Consensus 189 g 189 (263)
.
T Consensus 100 p 100 (178)
T PF02826_consen 100 P 100 (178)
T ss_dssp S
T ss_pred c
Confidence 4
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.036 Score=50.74 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=55.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccchhhhhhhcC-----CC-c--eEEEEccccccccCCCcEEEEc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFR-----NP-R--FELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~~-----~~-~--v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
++|.|+|++|++|++|++.|.+.+ .++..+..+............. .. . .+....+.....+.++|+|+-+
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 379999999999999999998876 4777774332222122211110 00 0 1111112222234679999988
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
.+. |+ ...+...+.+.|+++|-.|+..
T Consensus 81 ~p~----------------~~--s~~~~~~~~~~G~~VIDlsg~f 107 (341)
T TIGR00978 81 LPS----------------EV--AEEVEPKLAEAGKPVFSNASNH 107 (341)
T ss_pred CCH----------------HH--HHHHHHHHHHCCCEEEECChhh
Confidence 831 11 1123356666788887777764
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0063 Score=54.66 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=49.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
.+.+++++|.| .|.+|+.++..|...|.+|++++|+.... +.... ..+..+..+...+.+.+.|+||+++
T Consensus 149 ~l~g~kvlViG-~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~-~~~~~----~G~~~~~~~~l~~~l~~aDiVI~t~ 218 (296)
T PRK08306 149 TIHGSNVLVLG-FGRTGMTLARTLKALGANVTVGARKSAHL-ARITE----MGLSPFHLSELAEEVGKIDIIFNTI 218 (296)
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHH----cCCeeecHHHHHHHhCCCCEEEECC
Confidence 45688999999 58899999999999999999999875432 22211 1223333333344567899999986
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.029 Score=49.66 Aligned_cols=114 Identities=20% Similarity=0.115 Sum_probs=71.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeE---EEEecC-CccchhhhhhhcCCCceEEEE-ccccccccCCCcEEEEcc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEV---IVIDNF-FTGRKDNLVHHFRNPRFELIR-HDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V---~~l~r~-~~~~~~~~~~~~~~~~v~~~~-~Dv~~~~~~~iD~Vi~~A 188 (263)
..+-+|.|.||+|+||+.|...|. ..+.| .+.|.. .......+.++-....+..+. .|-.+..+.+.|+|+-=|
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPA 104 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPA 104 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecC
Confidence 345589999999999999986554 44433 333322 122223333332233444444 234455678899999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
|+.-- ....-++.|.+|---...+..++.+... .+.+||.
T Consensus 105 GVPRK--PGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN 146 (345)
T KOG1494|consen 105 GVPRK--PGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISN 146 (345)
T ss_pred CCCCC--CCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence 86432 2334578899999999999998877653 5555554
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.009 Score=51.09 Aligned_cols=37 Identities=27% Similarity=0.447 Sum_probs=32.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~ 153 (263)
++|.|+||+|.+|..++..|++.|++|++.+|+.+..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~ 37 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKA 37 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHH
Confidence 4799999999999999999999999999998876544
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.015 Score=48.59 Aligned_cols=35 Identities=34% Similarity=0.539 Sum_probs=27.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~ 152 (263)
|+|.|.| .|++|..++-.|++.|++|++++.+++.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~~~ 35 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDEEK 35 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HHH
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCChHH
Confidence 5788988 8999999999999999999999976543
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.074 Score=51.84 Aligned_cols=127 Identities=16% Similarity=0.277 Sum_probs=76.1
Q ss_pred CccccCCCCEEEEEcC-CChHHHHHHHHHHhCCCeEEEEecCCcc-chhhhhhhc-----CCCceEEEEcccc-------
Q 024766 109 PVGIGRRRLRIVVTGG-AGFVGSHLVDKLIDRGDEVIVIDNFFTG-RKDNLVHHF-----RNPRFELIRHDVV------- 174 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGa-tG~IG~~l~~~Ll~~G~~V~~l~r~~~~-~~~~~~~~~-----~~~~v~~~~~Dv~------- 174 (263)
|.+..+..+.++|||| -|.||.+++..|+..|+.|++...+... +.+-.+.+. .+..+-++..+..
T Consensus 389 p~~~~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdA 468 (866)
T COG4982 389 PNGGTYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDA 468 (866)
T ss_pred CCCCCcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHH
Confidence 4556678899999998 5899999999999999999987654332 222222221 1222222222221
Q ss_pred ------cc-------------ccCCCcEEEEccCCCCCCCCCC-C--HHHHHHHHHHHHHHHHHHHHHcC--------Ce
Q 024766 175 ------EP-------------ILLEVDQIYHLACPASPVHYKY-N--PVKTIKTNVMGTLNMLGLAKRVG--------AK 224 (263)
Q Consensus 175 ------~~-------------~~~~iD~Vi~~Ag~~~~~~~~~-~--~~~~~~~Nv~gt~~ll~~a~~~~--------~~ 224 (263)
++ .-..+|.+|-+|++.......+ . .+..+++-+-...+++...++.+ .+
T Consensus 469 lIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~h 548 (866)
T COG4982 469 LIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLH 548 (866)
T ss_pred HHHHhccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceE
Confidence 11 1123899999998654333222 2 34445666666677777765543 25
Q ss_pred EEEEcCc--ceec
Q 024766 225 FLLTSTS--EVYG 235 (263)
Q Consensus 225 iV~vSS~--~vyg 235 (263)
+|+-.|- +.||
T Consensus 549 VVLPgSPNrG~FG 561 (866)
T COG4982 549 VVLPGSPNRGMFG 561 (866)
T ss_pred EEecCCCCCCccC
Confidence 7777663 3454
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.024 Score=54.19 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=51.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
.+.+++|+|.| .|+.|.++++.|.+.|++|.+.++......+ ......+.+...+-....+.++|.||...|+.
T Consensus 12 ~~~~~~v~v~G-~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~----~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~ 85 (473)
T PRK00141 12 QELSGRVLVAG-AGVSGRGIAAMLSELGCDVVVADDNETARHK----LIEVTGVADISTAEASDQLDSFSLVVTSPGWR 85 (473)
T ss_pred cccCCeEEEEc-cCHHHHHHHHHHHHCCCEEEEECCChHHHHH----HHHhcCcEEEeCCCchhHhcCCCEEEeCCCCC
Confidence 45678899999 7999999999999999999999875432211 11122444544432233456789999999864
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.016 Score=60.13 Aligned_cols=106 Identities=12% Similarity=0.132 Sum_probs=71.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCcc------------------chh----hhhhhcCCCceEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTG------------------RKD----NLVHHFRNPRFELI 169 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~------------------~~~----~~~~~~~~~~v~~~ 169 (263)
.+...+|+|.| .|++|.++++.|+..|. +++++|...-. +.+ .+.+.-...+++..
T Consensus 21 kL~~s~VLIiG-~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~ 99 (1008)
T TIGR01408 21 KMAKSNVLISG-MGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAEAVVKKLAELNPYVHVSSS 99 (1008)
T ss_pred HHhhCcEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHHHHHHHHHHHCCCceEEEe
Confidence 35667899999 68899999999999998 77777643111 011 11111123456666
Q ss_pred EccccccccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEcCcceecC
Q 024766 170 RHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--AKFLLTSTSEVYGD 236 (263)
Q Consensus 170 ~~Dv~~~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~--~~iV~vSS~~vyg~ 236 (263)
..++.+..+.+.|+||.+- .+.... ..+-++|++.+ +.+|+.++.+.||.
T Consensus 100 ~~~l~~e~l~~fdvVV~t~---------~~~~~~--------~~in~~cr~~~~~I~fI~~~~~G~~G~ 151 (1008)
T TIGR01408 100 SVPFNEEFLDKFQCVVLTE---------MSLPLQ--------KEINDFCHSQCPPIAFISADVRGLFGS 151 (1008)
T ss_pred cccCCHHHHcCCCEEEECC---------CCHHHH--------HHHHHHHHHcCCCeEEEEEeecceEEE
Confidence 6677677788899999864 122222 24557888888 57888888888773
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0091 Score=57.21 Aligned_cols=72 Identities=15% Similarity=0.241 Sum_probs=47.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
.+++++++|+| +|++|++++..|.+.|++|++.+|+.++..+ +.+.... .....+... .+.+.|+||||...
T Consensus 329 ~~~~k~vlIiG-aGgiG~aia~~L~~~G~~V~i~~R~~~~~~~-la~~~~~---~~~~~~~~~-~l~~~DiVInatP~ 400 (477)
T PRK09310 329 PLNNQHVAIVG-AGGAAKAIATTLARAGAELLIFNRTKAHAEA-LASRCQG---KAFPLESLP-ELHRIDIIINCLPP 400 (477)
T ss_pred CcCCCEEEEEc-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHHhcc---ceechhHhc-ccCCCCEEEEcCCC
Confidence 45778999999 5899999999999999999888876543322 2222111 111111111 24579999999854
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.017 Score=51.62 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=34.7
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
..++||+++|+|+++.+|+.++..|.++|+.|+++.+.
T Consensus 154 i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~ 191 (286)
T PRK14175 154 IDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR 191 (286)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence 35799999999999999999999999999999998764
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.017 Score=47.23 Aligned_cols=70 Identities=23% Similarity=0.229 Sum_probs=43.7
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
..+.||+++|.| -|.+|+-+++.|...|.+|++...++-...+...+ .+++.. .++.+...|++|.+.|.
T Consensus 19 ~~l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~d-----Gf~v~~---~~~a~~~adi~vtaTG~ 88 (162)
T PF00670_consen 19 LMLAGKRVVVIG-YGKVGKGIARALRGLGARVTVTEIDPIRALQAAMD-----GFEVMT---LEEALRDADIFVTATGN 88 (162)
T ss_dssp S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHT-----T-EEE----HHHHTTT-SEEEE-SSS
T ss_pred eeeCCCEEEEeC-CCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhc-----CcEecC---HHHHHhhCCEEEECCCC
Confidence 356899999999 89999999999999999999998876544433332 223322 23455667887777764
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.023 Score=46.44 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
..++||+++|.|.+..+|+.|+..|.++|+.|.++....
T Consensus 32 ~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T 70 (160)
T PF02882_consen 32 IDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT 70 (160)
T ss_dssp -STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS
T ss_pred CCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC
Confidence 358999999999999999999999999999999876543
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.035 Score=52.42 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=63.3
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC------eEEEEecCCccchh------------------h----hhhhcCCCceEEE
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD------EVIVIDNFFTGRKD------------------N----LVHHFRNPRFELI 169 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~------~V~~l~r~~~~~~~------------------~----~~~~~~~~~v~~~ 169 (263)
+|+|.| +|+||.++++.|+..|. ++.++|...-+... . +.+.-...+++.+
T Consensus 1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 478888 79999999999999997 78887754211110 0 1111122344445
Q ss_pred Ecccc--------ccccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC
Q 024766 170 RHDVV--------EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (263)
Q Consensus 170 ~~Dv~--------~~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~ 236 (263)
...+. +..+.+.|+|+++. .|+..-..+-+.|...++.+|..++.+.+|.
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~al-----------------Dn~~aR~~vn~~C~~~~iPli~~gt~G~~G~ 137 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANAL-----------------DNVDARMYVDRRCVYYRKPLLESGTLGTKGN 137 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECC-----------------CCHHHHHHHHHHHHHhCCCEEEEecccceeE
Confidence 44332 12346689999877 2233333566677778788888888777774
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.04 Score=52.23 Aligned_cols=77 Identities=18% Similarity=0.102 Sum_probs=55.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~ 192 (263)
+.+|+|+|.| -|.-|.++++.|.+.|++|++.|.++.. ............+++..+...+....++|+||-+.|+..
T Consensus 5 ~~~~kv~V~G-LG~sG~a~a~~L~~~G~~v~v~D~~~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~ 81 (448)
T COG0771 5 FQGKKVLVLG-LGKSGLAAARFLLKLGAEVTVSDDRPAP-EGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPP 81 (448)
T ss_pred ccCCEEEEEe-cccccHHHHHHHHHCCCeEEEEcCCCCc-cchhhhhhhccCceeecCccchhccccCCEEEECCCCCC
Confidence 4488999999 7999999999999999999999976554 111111112345556655555566678999999998754
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.013 Score=55.11 Aligned_cols=72 Identities=15% Similarity=0.338 Sum_probs=49.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
+.+++++|.|+ |.+|..+++.|...| .+|++++|+.+...+... .++. ..+..+-......+.|+||.+.+.
T Consensus 178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~-~~g~---~~i~~~~l~~~l~~aDvVi~aT~s 250 (417)
T TIGR01035 178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAK-ELGG---EAVKFEDLEEYLAEADIVISSTGA 250 (417)
T ss_pred ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HcCC---eEeeHHHHHHHHhhCCEEEECCCC
Confidence 67889999995 999999999999999 589998887543322222 2221 233333333455679999998763
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.012 Score=52.47 Aligned_cols=74 Identities=18% Similarity=0.083 Sum_probs=47.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhc---CCCceEEEEcccc--ccccCCCcEEEEc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVV--EPILLEVDQIYHL 187 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~--~~~~~~iD~Vi~~ 187 (263)
.++|+++|.| +|+.|++++..|++.|. +++++.|..++.++...... ....+.. .+.. +....+.|+|||+
T Consensus 125 ~~~k~vlilG-aGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~--~~~~~~~~~~~~~divINa 201 (283)
T PRK14027 125 AKLDSVVQVG-AGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVG--VDARGIEDVIAAADGVVNA 201 (283)
T ss_pred cCCCeEEEEC-CcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEe--cCHhHHHHHHhhcCEEEEc
Confidence 5678999999 59999999999999997 78888886554433322211 1111222 2221 2234568999998
Q ss_pred cCC
Q 024766 188 ACP 190 (263)
Q Consensus 188 Ag~ 190 (263)
..+
T Consensus 202 Tp~ 204 (283)
T PRK14027 202 TPM 204 (283)
T ss_pred CCC
Confidence 754
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.069 Score=50.50 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=51.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc-hhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~-~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
+.+|+|+|+|+ |.+|.++++.|+++|++|.+.+...... .+.+... ...+.+..++..+....+.|.||...|+.
T Consensus 3 ~~~~~~~v~G~-g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~--~~gi~~~~g~~~~~~~~~~d~vv~spgi~ 78 (445)
T PRK04308 3 FQNKKILVAGL-GGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKM--FDGLVFYTGRLKDALDNGFDILALSPGIS 78 (445)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhc--cCCcEEEeCCCCHHHHhCCCEEEECCCCC
Confidence 45789999995 6899999999999999999998654321 1111110 12455555544444456799999999864
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.016 Score=54.67 Aligned_cols=73 Identities=21% Similarity=0.298 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
+.+++++|.| +|.+|..+++.|...|. +|++++|+.+...+... .++. ..+..+-....+.+.|+||.+.+..
T Consensus 180 ~~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~-~~g~---~~~~~~~~~~~l~~aDvVI~aT~s~ 253 (423)
T PRK00045 180 LSGKKVLVIG-AGEMGELVAKHLAEKGVRKITVANRTLERAEELAE-EFGG---EAIPLDELPEALAEADIVISSTGAP 253 (423)
T ss_pred ccCCEEEEEC-chHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHH-HcCC---cEeeHHHHHHHhccCCEEEECCCCC
Confidence 6788999999 59999999999999997 78888886544332222 2221 2333232334456789999998643
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.099 Score=44.23 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=31.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF 149 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~ 149 (263)
.++.++|+|.| .|++|+.++..|++.|. +++++|..
T Consensus 18 ~L~~~~V~IvG-~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICG-LGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 46778999999 59999999999999999 79998876
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.062 Score=49.63 Aligned_cols=96 Identities=15% Similarity=0.129 Sum_probs=56.7
Q ss_pred CEEEEEcCCChHHHHHHHHHH-hCCCe---EEEEecCCccchhhhhhhcCCCceEEEEcccccc-ccCCCcEEEEccCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLI-DRGDE---VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-ILLEVDQIYHLACPA 191 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll-~~G~~---V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-~~~~iD~Vi~~Ag~~ 191 (263)
++|.|.||||.+|+.+.+.|. ++... ++.+.-. +.......++.... ...++.+. .+.++|++|.++|-.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~---~s~g~~~~f~~~~~--~v~~~~~~~~~~~vDivffa~g~~ 75 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTS---QLGQAAPSFGGTTG--TLQDAFDIDALKALDIIITCQGGD 75 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEch---hhCCCcCCCCCCcc--eEEcCcccccccCCCEEEEcCCHH
Confidence 478999999999999999999 55554 3333321 11111112222232 33344443 677899999999521
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
-+..+...+++.|...+.|+.++.|-
T Consensus 76 ------------------~s~~~~p~~~~aG~~~~VIDnSSa~R 101 (366)
T TIGR01745 76 ------------------YTNEIYPKLRESGWQGYWIDAASSLR 101 (366)
T ss_pred ------------------HHHHHHHHHHhCCCCeEEEECChhhh
Confidence 12356677778885444555554453
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.031 Score=53.35 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=50.6
Q ss_pred cCCCCEEEEEcC----------------CChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc
Q 024766 113 GRRRLRIVVTGG----------------AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176 (263)
Q Consensus 113 ~~~~k~vlVTGa----------------tG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~ 176 (263)
+++||+|+||+| ||-.|.+|++.+..+|++|+++.-... .. ....++.+..+-.++
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~-~~-------~p~~v~~i~V~ta~e 324 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVD-LA-------DPQGVKVIHVESARQ 324 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcC-CC-------CCCCceEEEecCHHH
Confidence 489999999975 689999999999999999999873221 10 123455555544333
Q ss_pred c------cCCCcEEEEccCCCC
Q 024766 177 I------LLEVDQIYHLACPAS 192 (263)
Q Consensus 177 ~------~~~iD~Vi~~Ag~~~ 192 (263)
. ....|++|++|++..
T Consensus 325 M~~av~~~~~~Di~I~aAAVaD 346 (475)
T PRK13982 325 MLAAVEAALPADIAIFAAAVAD 346 (475)
T ss_pred HHHHHHhhCCCCEEEEeccccc
Confidence 1 123799999998643
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.021 Score=53.38 Aligned_cols=75 Identities=17% Similarity=0.341 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~ 192 (263)
+++++++|.| .|=+|.-+++.|.+.|. +|+++.|..++ ...+...+ ..+++..|-....+.+.|+||-+.|-..
T Consensus 176 L~~~~vlvIG-AGem~~lva~~L~~~g~~~i~IaNRT~er-A~~La~~~---~~~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 176 LKDKKVLVIG-AGEMGELVAKHLAEKGVKKITIANRTLER-AEELAKKL---GAEAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred cccCeEEEEc-ccHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHh---CCeeecHHHHHHhhhhCCEEEEecCCCc
Confidence 6889999999 69999999999999996 66666654443 33333332 3667777777778889999999986443
Q ss_pred C
Q 024766 193 P 193 (263)
Q Consensus 193 ~ 193 (263)
+
T Consensus 251 ~ 251 (414)
T COG0373 251 P 251 (414)
T ss_pred c
Confidence 3
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.053 Score=48.18 Aligned_cols=39 Identities=23% Similarity=0.152 Sum_probs=33.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~ 152 (263)
..+.+++|+|+++.+|..+++.+...|.+|++++++...
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~ 203 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDK 203 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 356799999999999999999999999999988876443
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.036 Score=44.28 Aligned_cols=39 Identities=28% Similarity=0.358 Sum_probs=35.4
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
+.+++||+|+|.|.+.-+|+.++..|.++|..|.++.+.
T Consensus 23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~ 61 (140)
T cd05212 23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWK 61 (140)
T ss_pred CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCC
Confidence 346899999999999999999999999999999998754
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.042 Score=50.26 Aligned_cols=96 Identities=18% Similarity=0.179 Sum_probs=57.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC---eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
+..+|.|.||||++|.+|++.|.++.+ ++..+..... ..+.+. +....+.+. |+.+..+.++|++|.+++..
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s-aG~~~~--~~~~~~~v~--~~~~~~~~~~Dvvf~a~p~~ 77 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEES-AGETLR--FGGKSVTVQ--DAAEFDWSQAQLAFFVAGRE 77 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc-CCceEE--ECCcceEEE--eCchhhccCCCEEEECCCHH
Confidence 345899999999999999999999533 6655543211 111111 122222222 43333446899999988421
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcce
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEV 233 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~v 233 (263)
-...++..+.+.|+++|=.|+..=
T Consensus 78 ------------------~s~~~~~~~~~~g~~VIDlS~~fR 101 (336)
T PRK08040 78 ------------------ASAAYAEEATNAGCLVIDSSGLFA 101 (336)
T ss_pred ------------------HHHHHHHHHHHCCCEEEECChHhc
Confidence 122455556666778777777643
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.019 Score=51.90 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=49.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
+.+++|+|.|+ |.+|..+++.|...|. +|++++|+.++..+...+ ++. ..+..|-....+.+.|+||.+.+.
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~-~g~---~~~~~~~~~~~l~~aDvVi~at~~ 248 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKE-LGG---NAVPLDELLELLNEADVVISATGA 248 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH-cCC---eEEeHHHHHHHHhcCCEEEECCCC
Confidence 57889999995 9999999999998764 788888765543333222 222 333333333445679999999863
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.014 Score=52.49 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCce-EEE-EccccccccCCCcEEEEcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF-ELI-RHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v-~~~-~~Dv~~~~~~~iD~Vi~~A 188 (263)
.|+++.|+|+.| +|.-=++.-.+.|.+|+++++...++++..... +...+ ... +.|.......-.|.++|++
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~L-GAd~fv~~~~d~d~~~~~~~~~dg~~~~v 254 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSL-GADVFVDSTEDPDIMKAIMKTTDGGIDTV 254 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhc-CcceeEEecCCHHHHHHHHHhhcCcceee
Confidence 788999999877 998666666667999999999876666655444 33333 333 4566666666667777766
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.05 Score=54.31 Aligned_cols=105 Identities=10% Similarity=0.026 Sum_probs=64.4
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc------------------hh----hhhhhcCCCceEE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR------------------KD----NLVHHFRNPRFEL 168 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~------------------~~----~~~~~~~~~~v~~ 168 (263)
..++.++|+|.| .|++|.++++.|+..|. +++++|...-.. .+ .+.++-...+++.
T Consensus 39 ~kL~~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~ 117 (679)
T PRK14851 39 ERLAEAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITP 117 (679)
T ss_pred HHHhcCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEE
Confidence 346788999999 79999999999999998 777776431000 00 0111112335666
Q ss_pred EEccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 169 IRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 169 ~~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
+...+.+ ..+.++|+||.+. . ++ .+..-..+.+.|.+.++.+|..+..+
T Consensus 118 ~~~~i~~~n~~~~l~~~DvVid~~---D------~~------~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 118 FPAGINADNMDAFLDGVDVVLDGL---D------FF------QFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred EecCCChHHHHHHHhCCCEEEECC---C------CC------cHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 6666543 3456899999776 1 11 01111235567788877777766543
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.043 Score=49.11 Aligned_cols=77 Identities=10% Similarity=0.014 Sum_probs=48.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCc--cchhhhhhhcCC---CceEEEEcccc---ccccCCCcE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFT--GRKDNLVHHFRN---PRFELIRHDVV---EPILLEVDQ 183 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~--~~~~~~~~~~~~---~~v~~~~~Dv~---~~~~~~iD~ 183 (263)
..++|+++|.| +|+-+++++-.|+..|. +|+++.|+.+ .+.+.+.+.+.. ..+.+...+-. .....+.|+
T Consensus 121 ~~~~k~vlvlG-aGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDi 199 (288)
T PRK12749 121 DIKGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI 199 (288)
T ss_pred CcCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCE
Confidence 45788999999 47779999999999997 8888888753 233333332221 11222222111 123457899
Q ss_pred EEEccCC
Q 024766 184 IYHLACP 190 (263)
Q Consensus 184 Vi~~Ag~ 190 (263)
|||+..+
T Consensus 200 vINaTp~ 206 (288)
T PRK12749 200 LTNGTKV 206 (288)
T ss_pred EEECCCC
Confidence 9998644
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.021 Score=50.88 Aligned_cols=71 Identities=21% Similarity=0.168 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc---ccCCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP---ILLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~---~~~~iD~Vi~~Ag 189 (263)
.+.+++|+||+|.+|..+++.+...|.+|+++.++.+.. +.+... ... ..+..+.... ...++|++++++|
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~-~~~~~~-~~~--~~~~~~~~~~~~~~~~~~d~v~~~~g 235 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKL-KILKEL-GAD--YVIDGSKFSEDVKKLGGADVVIELVG 235 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHH-HHHHHc-CCc--EEEecHHHHHHHHhccCCCEEEECCC
Confidence 467999999999999999999999999999988754432 222211 111 1222111111 1236999999986
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.035 Score=57.68 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=48.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCC-Ce-------------EEEEecCCccchhhhhhhcCCCceEEEEcccccc---
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRG-DE-------------VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--- 176 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G-~~-------------V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~--- 176 (263)
.++|+|+|.| +|+||+..++.|++.+ ++ |.+.++..+..++ +... ..++..+..|+.|.
T Consensus 567 ~~~~rIlVLG-AG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~-la~~--~~~~~~v~lDv~D~e~L 642 (1042)
T PLN02819 567 KKSQNVLILG-AGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKE-TVEG--IENAEAVQLDVSDSESL 642 (1042)
T ss_pred ccCCcEEEEC-CCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHH-HHHh--cCCCceEEeecCCHHHH
Confidence 3578999999 5999999999998763 23 6666665433222 2221 12456677776653
Q ss_pred --ccCCCcEEEEccC
Q 024766 177 --ILLEVDQIYHLAC 189 (263)
Q Consensus 177 --~~~~iD~Vi~~Ag 189 (263)
.+.++|+||++..
T Consensus 643 ~~~v~~~DaVIsalP 657 (1042)
T PLN02819 643 LKYVSQVDVVISLLP 657 (1042)
T ss_pred HHhhcCCCEEEECCC
Confidence 2356999999985
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.035 Score=52.40 Aligned_cols=67 Identities=21% Similarity=0.309 Sum_probs=49.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~~iD~Vi~~A 188 (263)
|+|+|.|+ |.+|..+++.|.++|++|++++++.+...+ +. ....+.++.+|.++. ...++|.||-+.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~-~~---~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRR-LQ---DRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHH-HH---hhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 47899996 999999999999999999999886543222 11 123577788887664 245688887766
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.021 Score=53.80 Aligned_cols=68 Identities=21% Similarity=0.122 Sum_probs=48.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.+.+++|+|+| .|.||+.++..|...|.+|+++++++....+.... .+.+. + .++.+.+.|+||.+.|
T Consensus 209 ~l~Gk~VlViG-~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~-----G~~v~--~-l~eal~~aDVVI~aTG 276 (425)
T PRK05476 209 LIAGKVVVVAG-YGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD-----GFRVM--T-MEEAAELGDIFVTATG 276 (425)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc-----CCEec--C-HHHHHhCCCEEEECCC
Confidence 36899999999 69999999999999999999998875543222111 12222 2 2344567899998874
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.015 Score=47.36 Aligned_cols=65 Identities=20% Similarity=0.131 Sum_probs=41.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
|++|-+.| .|-+|..+++.|++.|++|.+.+|+.++.++..... ...+|-..+...+.|+|+-+.
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g-------~~~~~s~~e~~~~~dvvi~~v 65 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAG-------AEVADSPAEAAEQADVVILCV 65 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTT-------EEEESSHHHHHHHBSEEEE-S
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhh-------hhhhhhhhhHhhcccceEeec
Confidence 46899999 799999999999999999999988754433322211 333343344444556666654
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.075 Score=50.11 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=52.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccCCCcEEEEc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHL 187 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~~iD~Vi~~ 187 (263)
...++++|.|+ |.+|..+++.|.+.|++|++++++++...+ +.+. ...+.++.+|.+++ ...+.|.||-+
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~-~~~~--~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEE-LAEE--LPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHH-HHHH--CCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 35688999995 999999999999999999999876553322 2211 23567888898776 33468888866
Q ss_pred c
Q 024766 188 A 188 (263)
Q Consensus 188 A 188 (263)
.
T Consensus 305 ~ 305 (453)
T PRK09496 305 T 305 (453)
T ss_pred C
Confidence 5
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.028 Score=54.42 Aligned_cols=75 Identities=20% Similarity=0.311 Sum_probs=52.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
+.+++|+|.|+ |.+|..+++.|...|. +|+++.|+.+...+ +...+....+.+...|-....+.+.|+||.+.+.
T Consensus 264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~-La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s 339 (519)
T PLN00203 264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAA-LREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS 339 (519)
T ss_pred CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHH-HHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC
Confidence 66899999995 9999999999999997 78888887554333 2222222233333444334556789999998753
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.015 Score=52.43 Aligned_cols=72 Identities=21% Similarity=0.054 Sum_probs=44.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceE-EEEccccccc---c-CCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFE-LIRHDVVEPI---L-LEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~-~~~~Dv~~~~---~-~~iD~Vi~~Ag 189 (263)
.+|+|+||+|.+|..++..+...|. +|++++++.++. +.+.+.++...+. .-..|+.+.. . .++|+++++.|
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~-~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g 233 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKC-QLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVG 233 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHH-HHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCC
Confidence 7999999999999999988888898 799887754432 2222212222111 1111222211 1 36899999885
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.016 Score=53.65 Aligned_cols=73 Identities=18% Similarity=0.205 Sum_probs=47.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc--cccccccCCCcEEEEccCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH--DVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~--Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
.+++++|+|+ |.+|...++.+...|.+|++++++.+... .+...+. ..+..... +...+.+.+.|+||++++.
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~-~l~~~~g-~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLR-QLDAEFG-GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHH-HHHHhcC-ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 4567999985 99999999999999999999998654322 2222211 11111111 1123345679999999854
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.054 Score=46.25 Aligned_cols=77 Identities=17% Similarity=0.243 Sum_probs=52.9
Q ss_pred CCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEc
Q 024766 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 108 ~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
.|...++++|+|+|.| +|-+|..=++.|++.|++|+++.-.. .+++.......++..+..+.....+.+++.||-+
T Consensus 4 lPl~~~l~~k~VlvvG-gG~va~rKa~~ll~~ga~v~Vvs~~~---~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaA 79 (210)
T COG1648 4 LPLFLDLEGKKVLVVG-GGSVALRKARLLLKAGADVTVVSPEF---EPELKALIEEGKIKWIEREFDAEDLDDAFLVIAA 79 (210)
T ss_pred cceEEEcCCCEEEEEC-CCHHHHHHHHHHHhcCCEEEEEcCCc---cHHHHHHHHhcCcchhhcccChhhhcCceEEEEe
Confidence 5677788999999999 69999999999999999999987544 2333333333444455433333344456666655
Q ss_pred c
Q 024766 188 A 188 (263)
Q Consensus 188 A 188 (263)
.
T Consensus 80 t 80 (210)
T COG1648 80 T 80 (210)
T ss_pred C
Confidence 5
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.07 Score=50.23 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=33.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK 154 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~ 154 (263)
.++|.|.| .|++|..++..|++.|++|++++++++..+
T Consensus 3 ~~kI~VIG-lG~~G~~~A~~La~~G~~V~~~D~~~~~v~ 40 (415)
T PRK11064 3 FETISVIG-LGYIGLPTAAAFASRQKQVIGVDINQHAVD 40 (415)
T ss_pred ccEEEEEC-cchhhHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 36899998 799999999999999999999998755443
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.035 Score=49.89 Aligned_cols=41 Identities=22% Similarity=0.177 Sum_probs=36.3
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
+..++||+|.|.|.+|.+|+.++..|+++|+.|++..+...
T Consensus 154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~ 194 (301)
T PRK14194 154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST 194 (301)
T ss_pred CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC
Confidence 34679999999999999999999999999999999876543
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.061 Score=51.64 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=50.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
+.+++|+|.| .|.+|...++.|.++|++|++.|+..... +.+. ...+.+...+.....+.++|+||.+.|+.
T Consensus 10 ~~~~~v~V~G-~G~sG~aa~~~L~~~G~~v~~~D~~~~~~-~~l~----~~g~~~~~~~~~~~~l~~~D~VV~SpGi~ 81 (488)
T PRK03369 10 LPGAPVLVAG-AGVTGRAVLAALTRFGARPTVCDDDPDAL-RPHA----ERGVATVSTSDAVQQIADYALVVTSPGFR 81 (488)
T ss_pred cCCCeEEEEc-CCHHHHHHHHHHHHCCCEEEEEcCCHHHH-HHHH----hCCCEEEcCcchHhHhhcCCEEEECCCCC
Confidence 4678999999 78999999999999999999998653321 1111 12344444433334456789999999864
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.02 Score=52.64 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=46.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcC-CCceEEEEcccccccc----CCCcEEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEPIL----LEVDQIYH 186 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~Dv~~~~~----~~iD~Vi~ 186 (263)
..+++.|||.||+|++|++.++-....|. .|+.++ +.+. .+ +.+.++ ..-+++-..|+.+... .++|+|+.
T Consensus 155 ~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~-s~e~-~~-l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD 231 (347)
T KOG1198|consen 155 LSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTAC-SKEK-LE-LVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLD 231 (347)
T ss_pred cCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEc-ccch-HH-HHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEE
Confidence 34678999999999999999988888884 555444 3222 12 222222 2223344444444432 35999999
Q ss_pred ccCC
Q 024766 187 LACP 190 (263)
Q Consensus 187 ~Ag~ 190 (263)
|+|-
T Consensus 232 ~vg~ 235 (347)
T KOG1198|consen 232 CVGG 235 (347)
T ss_pred CCCC
Confidence 9974
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.044 Score=48.92 Aligned_cols=38 Identities=32% Similarity=0.413 Sum_probs=34.5
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
..+.||+++|.|.+..+|+.|+..|+++|+.|+++.+.
T Consensus 155 i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~ 192 (285)
T PRK10792 155 IDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF 192 (285)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECC
Confidence 45789999999999999999999999999999988754
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.15 Score=43.90 Aligned_cols=77 Identities=10% Similarity=0.235 Sum_probs=57.8
Q ss_pred CCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEc
Q 024766 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 108 ~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
.|+...+++++++|.| +|-++..=++.|++.|++|+++.-... +.+.......++.+..-+.....+.+.+.||-+
T Consensus 17 ~pi~l~~~~~~VLVVG-GG~VA~RK~~~Ll~~gA~VtVVap~i~---~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 17 MFISLLSNKIKVLIIG-GGKAAFIKGKTFLKKGCYVYILSKKFS---KEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred eeeEEECCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCCC---HHHHHHHhCCCEEEEeCCCChHHhCCCcEEEEC
Confidence 4666677899999999 599999999999999999999874322 223333345667777777666677788888877
Q ss_pred c
Q 024766 188 A 188 (263)
Q Consensus 188 A 188 (263)
.
T Consensus 93 T 93 (223)
T PRK05562 93 T 93 (223)
T ss_pred C
Confidence 6
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.048 Score=48.69 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=63.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccC-CCcEEEEccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILL-EVDQIYHLACP 190 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~-~iD~Vi~~Ag~ 190 (263)
..++++++|.| +|+.+++++..|++.|. +++++.|..++.++ +.+.+..........+..+.... +.|+|||+...
T Consensus 123 ~~~~~~vlilG-AGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~-La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~ 200 (283)
T COG0169 123 DVTGKRVLILG-AGGAARAVAFALAEAGAKRITVVNRTRERAEE-LADLFGELGAAVEAAALADLEGLEEADLLINATPV 200 (283)
T ss_pred ccCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-HHHHhhhcccccccccccccccccccCEEEECCCC
Confidence 44689999999 69999999999999996 78888887665433 33333222111111112111112 68999999764
Q ss_pred CCCCCCCCC--HHHH-------HHHHHHH-HHHHHHHHHHcCCe
Q 024766 191 ASPVHYKYN--PVKT-------IKTNVMG-TLNMLGLAKRVGAK 224 (263)
Q Consensus 191 ~~~~~~~~~--~~~~-------~~~Nv~g-t~~ll~~a~~~~~~ 224 (263)
......... .... +++++.- ---+++.|++.|++
T Consensus 201 Gm~~~~~~~~~~~~~l~~~~~v~D~vY~P~~TplL~~A~~~G~~ 244 (283)
T COG0169 201 GMAGPEGDSPVPAELLPKGAIVYDVVYNPLETPLLREARAQGAK 244 (283)
T ss_pred CCCCCCCCCCCcHHhcCcCCEEEEeccCCCCCHHHHHHHHcCCe
Confidence 332221110 0111 1333331 33578888888877
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.023 Score=51.38 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=33.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~ 152 (263)
..|.+++|+||+|.+|..++..+...|.+|++++++.++
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~ 188 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEK 188 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 357899999999999999998888899999988876443
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.095 Score=47.64 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=23.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD 141 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~ 141 (263)
+++|.|.||||-+|+.+++.|.++..
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f 26 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHF 26 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCC
Confidence 35899999999999999999999755
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.031 Score=52.06 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=49.3
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
..+.+|+|.|.| .|-||+.+++.|...|.+|++.+|...... .... ..+. ..+-.++.+.+.|+|+.+..
T Consensus 188 ~~L~gktVGIvG-~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~--~~~~---~g~~--~~~~l~ell~~aDvV~l~lP 257 (385)
T PRK07574 188 YDLEGMTVGIVG-AGRIGLAVLRRLKPFDVKLHYTDRHRLPEE--VEQE---LGLT--YHVSFDSLVSVCDVVTIHCP 257 (385)
T ss_pred eecCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEECCCCCchh--hHhh---cCce--ecCCHHHHhhcCCEEEEcCC
Confidence 458899999999 799999999999999999999987642211 1111 1111 12334566778999987773
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.033 Score=52.76 Aligned_cols=66 Identities=21% Similarity=0.202 Sum_probs=45.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
++|.|+||+|.+|..+++.|.+.|++|++.+|+.+...+..... .+. . .+.......+.|+||-+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~----gv~-~-~~~~~e~~~~aDvVIlav 66 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL----GVE-Y-ANDNIDAAKDADIVIISV 66 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc----CCe-e-ccCHHHHhccCCEEEEec
Confidence 47999999999999999999999999999998654322221111 111 1 111223456789998877
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.075 Score=54.72 Aligned_cols=108 Identities=14% Similarity=0.019 Sum_probs=66.8
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc------------------h----hhhhhhcCCCceEE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR------------------K----DNLVHHFRNPRFEL 168 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~------------------~----~~~~~~~~~~~v~~ 168 (263)
..++..+|+|.| .|++|..+++.|+..|. +++++|...-.. . +.+.++-...+++.
T Consensus 328 ~kL~~srVlVvG-lGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~ 406 (989)
T PRK14852 328 RRLLRSRVAIAG-LGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRS 406 (989)
T ss_pred HHHhcCcEEEEC-CcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEE
Confidence 356888999999 79999999999999998 777765431100 0 01111112335555
Q ss_pred EEccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 169 IRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 169 ~~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
+...+.+ ..+.++|+||.+.- ++. +..-..+.+.|.+.++.+|..++.+.+|
T Consensus 407 ~~~~I~~en~~~fl~~~DiVVDa~D---------~~~------~~~rr~l~~~c~~~~IP~I~ag~~G~~g 462 (989)
T PRK14852 407 FPEGVAAETIDAFLKDVDLLVDGID---------FFA------LDIRRRLFNRALELGIPVITAGPLGYSC 462 (989)
T ss_pred EecCCCHHHHHHHhhCCCEEEECCC---------Ccc------HHHHHHHHHHHHHcCCCEEEeeccccCe
Confidence 5554433 35678999998771 110 0111245566778888888887765554
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.057 Score=48.91 Aligned_cols=66 Identities=17% Similarity=0.189 Sum_probs=47.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
.+.+|+|.|.| .|.||+.+++.|...|.+|++.++...... .-......+-.++.+.+.|+|+.+.
T Consensus 133 ~l~g~tvgIvG-~G~IG~~vA~~l~afG~~V~~~~~~~~~~~---------~~~~~~~~~~l~e~l~~aDvvv~~l 198 (312)
T PRK15469 133 HREDFTIGILG-AGVLGSKVAQSLQTWGFPLRCWSRSRKSWP---------GVQSFAGREELSAFLSQTRVLINLL 198 (312)
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCCCCCC---------CceeecccccHHHHHhcCCEEEECC
Confidence 56889999999 899999999999999999999887533211 0001112333456677889998877
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.19 Score=38.62 Aligned_cols=30 Identities=27% Similarity=0.636 Sum_probs=25.9
Q ss_pred EEEEEcCCChHHHHHHHHHHhC-CCeEEEEe
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDR-GDEVIVID 147 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~ 147 (263)
++.|+|++|.+|..+++.|.+. +.++..+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~ 31 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALA 31 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEE
Confidence 4789999999999999999994 77887773
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.094 Score=49.89 Aligned_cols=73 Identities=19% Similarity=0.112 Sum_probs=50.2
Q ss_pred cCCCCEEEEEcCCChHHHH-HHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSH-LVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~-l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
..++|+|+|.| -|..|.. +++.|.++|++|.+.|.......+.+ ....+.+.... ....+.++|.||...|+.
T Consensus 4 ~~~~~~v~viG-~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l----~~~gi~~~~~~-~~~~~~~~d~vv~spgi~ 77 (461)
T PRK00421 4 LRRIKRIHFVG-IGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRL----LELGAIIFIGH-DAENIKDADVVVYSSAIP 77 (461)
T ss_pred cCCCCEEEEEE-EchhhHHHHHHHHHhCCCeEEEECCCCChHHHHH----HHCCCEEeCCC-CHHHCCCCCEEEECCCCC
Confidence 35667899999 5779999 89999999999999987544322222 12234444322 233455799999999864
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.043 Score=51.60 Aligned_cols=68 Identities=22% Similarity=0.148 Sum_probs=48.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.+.|++|+|.| .|.||..++..+...|.+|+++++++.+...... ..+..+.. ++.+.+.|+||.++|
T Consensus 199 ~l~GktVvViG-~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~-----~G~~~~~~---~e~v~~aDVVI~atG 266 (413)
T cd00401 199 MIAGKVAVVAG-YGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM-----EGYEVMTM---EEAVKEGDIFVTTTG 266 (413)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh-----cCCEEccH---HHHHcCCCEEEECCC
Confidence 36899999999 7999999999999999999998876554322211 11222221 234567899999885
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.054 Score=40.99 Aligned_cols=64 Identities=25% Similarity=0.404 Sum_probs=46.5
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------cCCCcEEEEcc
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHLA 188 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------~~~iD~Vi~~A 188 (263)
|+|.| .|-+|..+++.|.+.+.+|++++++++...+.. ...+.++.+|.+++. +.+.|.|+-+.
T Consensus 1 vvI~G-~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~ 70 (116)
T PF02254_consen 1 VVIIG-YGRIGREIAEQLKEGGIDVVVIDRDPERVEELR-----EEGVEVIYGDATDPEVLERAGIEKADAVVILT 70 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHH-----HTTSEEEES-TTSHHHHHHTTGGCESEEEEES
T ss_pred eEEEc-CCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHH-----hcccccccccchhhhHHhhcCccccCEEEEcc
Confidence 56777 589999999999998779999997644422221 223789999998873 35688888877
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.089 Score=38.04 Aligned_cols=35 Identities=31% Similarity=0.523 Sum_probs=29.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhC-CCeEEEEec
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDN 148 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r 148 (263)
.+.+++++|.|+ |.+|+.++..|.+. +.+|.+.+|
T Consensus 20 ~~~~~~v~i~G~-G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 20 SLKGKTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcC
Confidence 467789999996 99999999999998 557777654
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.059 Score=48.14 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=33.8
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEec
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN 148 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r 148 (263)
..+.||+++|.|.+..+|+.|+..|.++|+.|.++..
T Consensus 160 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs 196 (287)
T PRK14176 160 VDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHV 196 (287)
T ss_pred CCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEec
Confidence 4579999999999999999999999999999988764
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.039 Score=52.53 Aligned_cols=68 Identities=19% Similarity=0.184 Sum_probs=46.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.+.||+++|.| .|.||+.+++.+...|.+|+++++++....+..... +... ++ ++.+.+.|+||.+.|
T Consensus 251 ~LaGKtVvViG-yG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G-----~~vv--~l-eEal~~ADVVI~tTG 318 (477)
T PLN02494 251 MIAGKVAVICG-YGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG-----YQVL--TL-EDVVSEADIFVTTTG 318 (477)
T ss_pred ccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC-----Ceec--cH-HHHHhhCCEEEECCC
Confidence 36899999999 799999999999999999999887654432222111 1111 22 334556777777664
|
|
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.08 Score=47.58 Aligned_cols=108 Identities=22% Similarity=0.270 Sum_probs=63.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchh------------------hhhhhc----C----CCce
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKD------------------NLVHHF----R----NPRF 166 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~------------------~~~~~~----~----~~~v 166 (263)
+++.-|+|.| +|++|++++..|++.|. ++.+++-..-.... .+.+++ . ..+.
T Consensus 72 l~~syVVVVG-~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~eIdar~ 150 (430)
T KOG2018|consen 72 LTNSYVVVVG-AGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCEIDARN 150 (430)
T ss_pred hcCcEEEEEe-cCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccceecHHH
Confidence 4666788888 79999999999999998 56666533221111 011111 0 0111
Q ss_pred EEEEcccccc-ccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCC
Q 024766 167 ELIRHDVVEP-ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLE 239 (263)
Q Consensus 167 ~~~~~Dv~~~-~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~ 239 (263)
.++..+..+. .++++|.|+.|. .|+..-..+++.|-.+|.++|--..++.-.+|..
T Consensus 151 ~l~~~~s~edll~gnPdFvvDci-----------------DNidtKVdLL~y~~~~~l~Viss~GaaaksDPTr 207 (430)
T KOG2018|consen 151 MLWTSSSEEDLLSGNPDFVVDCI-----------------DNIDTKVDLLEYCYNHGLKVISSTGAAAKSDPTR 207 (430)
T ss_pred hhcCCCchhhhhcCCCCeEeEhh-----------------hhhhhhhHHHHHHHHcCCceEeccCccccCCCce
Confidence 1222222222 446799999988 4445555688999888766654433445555544
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.15 Score=48.72 Aligned_cols=75 Identities=11% Similarity=-0.033 Sum_probs=51.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
+++|+|+|.|. |--|.+.++.|.+.|++|++.+.+.........+. .. .+..+..+-....+.++|.||.+.|+.
T Consensus 6 ~~~~~v~v~G~-G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l-~~-~~~~~~~~~~~~~~~~~d~vV~SpgI~ 80 (468)
T PRK04690 6 LEGRRVALWGW-GREGRAAYRALRAHLPAQALTLFCNAVEAREVGAL-AD-AALLVETEASAQRLAAFDVVVKSPGIS 80 (468)
T ss_pred cCCCEEEEEcc-chhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHH-hh-cCEEEeCCCChHHccCCCEEEECCCCC
Confidence 45789999995 88999999999999999999985433222211121 11 233444443444556799999999864
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.088 Score=52.89 Aligned_cols=101 Identities=18% Similarity=0.113 Sum_probs=64.2
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccch---------------------hhhhhhcCCCceEE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRK---------------------DNLVHHFRNPRFEL 168 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~---------------------~~~~~~~~~~~v~~ 168 (263)
..++.++|+|.|. | +|+.++..|+..|. +++++|...=... +.+.++-...+++.
T Consensus 103 ~~L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~ 180 (722)
T PRK07877 103 ERLGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV 180 (722)
T ss_pred HHHhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence 3468889999998 7 99999999999994 7888765411100 01111112335666
Q ss_pred EEccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCc
Q 024766 169 IRHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (263)
Q Consensus 169 ~~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~ 231 (263)
+...+.. ..+.++|+||.|. ++. ..=..+-++|.+.++.+|+-++.
T Consensus 181 ~~~~i~~~n~~~~l~~~DlVvD~~---------D~~--------~~R~~ln~~a~~~~iP~i~~~~~ 230 (722)
T PRK07877 181 FTDGLTEDNVDAFLDGLDVVVEEC---------DSL--------DVKVLLREAARARRIPVLMATSD 230 (722)
T ss_pred EeccCCHHHHHHHhcCCCEEEECC---------CCH--------HHHHHHHHHHHHcCCCEEEEcCC
Confidence 6665543 3456799999998 222 22223456788888888877753
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.067 Score=48.26 Aligned_cols=65 Identities=12% Similarity=0.004 Sum_probs=47.1
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
..+.||++.|.| .|.||+++++.|...|.+|++.+|..... .+... .+-.++.+.+.|+|+.+..
T Consensus 118 ~~L~gktvgIiG-~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----------~~~~~-~~~l~ell~~aDiv~~~lp 182 (303)
T PRK06436 118 KLLYNKSLGILG-YGGIGRRVALLAKAFGMNIYAYTRSYVND-----------GISSI-YMEPEDIMKKSDFVLISLP 182 (303)
T ss_pred CCCCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCccc-----------Ccccc-cCCHHHHHhhCCEEEECCC
Confidence 468899999999 89999999998888899999998753210 01100 1224456677899987774
|
|
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.13 Score=48.52 Aligned_cols=115 Identities=11% Similarity=0.118 Sum_probs=69.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch------------------hh----hhhhcCCCceEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK------------------DN----LVHHFRNPRFELIR 170 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~------------------~~----~~~~~~~~~v~~~~ 170 (263)
++..+|+|.| +|++|.++++-|+..|. +++++|...-... +. +.+.-....++.+.
T Consensus 18 L~~s~VlliG-~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~ 96 (425)
T cd01493 18 LESAHVCLLN-ATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVE 96 (425)
T ss_pred HhhCeEEEEc-CcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5667899998 57799999999999998 7888764411100 00 11111122344444
Q ss_pred cccc------ccccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCC----CCC
Q 024766 171 HDVV------EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP----LEH 240 (263)
Q Consensus 171 ~Dv~------~~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~----~~~ 240 (263)
.++. ...+.+.|+||.+.. +.. ....+.+.|.+.++.+|+++|.+.||.. .++
T Consensus 97 e~~~~ll~~~~~f~~~fdiVI~t~~---------~~~--------~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~~h 159 (425)
T cd01493 97 ESPEALLDNDPSFFSQFTVVIATNL---------PES--------TLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKEH 159 (425)
T ss_pred cccchhhhhHHHHhcCCCEEEECCC---------CHH--------HHHHHHHHHHHcCCCEEEEecccCEEEEEEEECCe
Confidence 4332 123456788875431 111 1223557788888899999999999842 244
Q ss_pred CcCCCC
Q 024766 241 PQKETY 246 (263)
Q Consensus 241 ~~~E~~ 246 (263)
.+.|+.
T Consensus 160 ~i~et~ 165 (425)
T cd01493 160 TIVESH 165 (425)
T ss_pred EEEECC
Confidence 455553
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.03 Score=49.14 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.+.+++|+|++|.+|..++..+...|.+|+++++..+
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~ 175 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEE 175 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 5679999999999999999999999999998887544
|
PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.062 Score=47.95 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=33.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEec
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN 148 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r 148 (263)
..++||+++|.|.++.+|+.|+..|.++|+.|+++..
T Consensus 154 i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs 190 (285)
T PRK14189 154 IPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHS 190 (285)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecC
Confidence 4579999999999999999999999999999988654
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.15 Score=47.80 Aligned_cols=35 Identities=37% Similarity=0.436 Sum_probs=30.9
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~ 153 (263)
+|.|.| .|.+|..++..|++.|++|++++++.+..
T Consensus 2 kI~vIG-lG~~G~~lA~~La~~G~~V~~~d~~~~~v 36 (411)
T TIGR03026 2 KIAVIG-LGYVGLPLAALLADLGHEVTGVDIDQEKV 36 (411)
T ss_pred EEEEEC-CCchhHHHHHHHHhcCCeEEEEECCHHHH
Confidence 688888 89999999999999999999999875543
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.044 Score=49.91 Aligned_cols=33 Identities=27% Similarity=0.591 Sum_probs=27.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEec
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDN 148 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r 148 (263)
+.+|.|.||+|+-|.+|.+.|+.... ++..+..
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss 35 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISS 35 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeec
Confidence 56899999999999999999999865 7655543
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.066 Score=48.08 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=33.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEe
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID 147 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~ 147 (263)
..++||+|.|.|.++.+|..++..|+++|+.|++..
T Consensus 154 i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 154 GDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred CCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 357999999999999999999999999999999984
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.039 Score=51.21 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
..++|.|.||.|.+|..++..|.+.|++|++.+++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 45789999999999999999999999999999874
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.18 Score=45.27 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=44.6
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc------------------hhh----hhhhcCCCceEEEEcccc
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR------------------KDN----LVHHFRNPRFELIRHDVV 174 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~------------------~~~----~~~~~~~~~v~~~~~Dv~ 174 (263)
+|+|.| .|++|.++++.|+..|. ++.++|...-.. .+. +.+.....+++....++.
T Consensus 1 kVlVVG-aGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIG-AGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 478888 79999999999999998 777776431100 000 111112335556655554
Q ss_pred c---cccCCCcEEEEcc
Q 024766 175 E---PILLEVDQIYHLA 188 (263)
Q Consensus 175 ~---~~~~~iD~Vi~~A 188 (263)
+ ..+.+.|+||.+.
T Consensus 80 ~~~~~f~~~fdvVi~al 96 (291)
T cd01488 80 DKDEEFYRQFNIIICGL 96 (291)
T ss_pred chhHHHhcCCCEEEECC
Confidence 3 3456799999876
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.061 Score=51.29 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=47.1
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
..+.||+++|.| .|.||+.+++.|...|.+|+++++++....+... ..+... + .++.+.+.|+||.++|
T Consensus 250 ~~LaGKtVgVIG-~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-----~G~~~~--~-leell~~ADIVI~atG 318 (476)
T PTZ00075 250 VMIAGKTVVVCG-YGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-----EGYQVV--T-LEDVVETADIFVTATG 318 (476)
T ss_pred CCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-----cCceec--c-HHHHHhcCCEEEECCC
Confidence 357899999999 7899999999999999999998776443322111 112221 1 2334556777777664
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.2 Score=47.78 Aligned_cols=77 Identities=17% Similarity=0.138 Sum_probs=58.9
Q ss_pred CCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEc
Q 024766 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 108 ~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
.|...++++|+|+|.| +|-++..=++.|++.|++|+++.-.. .+++.......++.++.-+.....+.+.+.||-+
T Consensus 4 ~P~~~~l~~~~vlvvG-gG~vA~rk~~~ll~~ga~v~visp~~---~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~a 79 (457)
T PRK10637 4 LPIFCQLRDRDCLLVG-GGDVAERKARLLLDAGARLTVNALAF---IPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAA 79 (457)
T ss_pred eceEEEcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCC---CHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEEC
Confidence 4667788999999999 59999999999999999999986432 2333333345677888877777777888877766
Q ss_pred c
Q 024766 188 A 188 (263)
Q Consensus 188 A 188 (263)
.
T Consensus 80 t 80 (457)
T PRK10637 80 T 80 (457)
T ss_pred C
Confidence 5
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.034 Score=50.81 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=32.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
..+.+|+|+|++|.+|..++..+...|.+|++++++.+
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~ 194 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQ 194 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 35789999999999999999888888999988876543
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.058 Score=49.30 Aligned_cols=68 Identities=16% Similarity=0.116 Sum_probs=48.8
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
+..+.||+|.|.| .|.||+.+++.|...|.+|++.+|...... ... ..+. .+-.++.+.+.|+|+.+.
T Consensus 145 g~~L~gktvgIiG-~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~---~~~---~~~~---~~~l~ell~~aDiV~l~l 212 (333)
T PRK13243 145 GYDVYGKTIGIIG-FGRIGQAVARRAKGFGMRILYYSRTRKPEA---EKE---LGAE---YRPLEELLRESDFVSLHV 212 (333)
T ss_pred ccCCCCCEEEEEC-cCHHHHHHHHHHHHCCCEEEEECCCCChhh---HHH---cCCE---ecCHHHHHhhCCEEEEeC
Confidence 3468999999999 799999999999999999999887543211 111 0111 122445677899998877
|
|
| >cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR) | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.043 Score=48.23 Aligned_cols=39 Identities=28% Similarity=0.351 Sum_probs=34.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~ 152 (263)
..+++++|+|++|.+|..+++.+...|.+|+++++..+.
T Consensus 143 ~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~ 181 (325)
T cd08253 143 KAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEG 181 (325)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 357899999999999999999999999999998876543
|
Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.079 Score=47.19 Aligned_cols=64 Identities=14% Similarity=0.262 Sum_probs=43.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
++|.|.| .|.+|..++..|++.|++|++.+|+.+....... ..+ ...+..++...+.|+||-+.
T Consensus 3 ~~IgviG-~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~-----~g~--~~~~~~~e~~~~~d~vi~~v 66 (296)
T PRK11559 3 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA-----AGA--ETASTAKAVAEQCDVIITML 66 (296)
T ss_pred ceEEEEc-cCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH-----CCC--eecCCHHHHHhcCCEEEEeC
Confidence 5789998 7999999999999999999998876543322111 111 11222334456789988876
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.092 Score=46.81 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=34.8
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
+..++||+++|.|.+..+|+-|+..|.++|+.|+++...
T Consensus 153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~ 191 (282)
T PRK14180 153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF 191 (282)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCC
Confidence 345789999999999999999999999999999887653
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.12 Score=53.89 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=67.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC------eEEEEecCCccch------------------hhh----hhhcCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD------EVIVIDNFFTGRK------------------DNL----VHHFRNP 164 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~------~V~~l~r~~~~~~------------------~~~----~~~~~~~ 164 (263)
.++..+|+|.| +|+||.++++.|+..|. +++++|...-... +.+ .+.-...
T Consensus 416 kL~~~kVlvvG-aGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk~Ka~vaa~~l~~~Np~v 494 (1008)
T TIGR01408 416 KLQNLNIFLVG-CGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGKPKSYTAADATLKINPQI 494 (1008)
T ss_pred HHhhCcEEEEC-CChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCcHHHHHHHHHHHHHCCCC
Confidence 35667899999 79999999999999987 7888764411100 001 1111223
Q ss_pred ceEEEEcccc--------ccccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC
Q 024766 165 RFELIRHDVV--------EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (263)
Q Consensus 165 ~v~~~~~Dv~--------~~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~ 236 (263)
+++.+...+. +..+.+.|+|+++. .|+..-..+-+.|...++.+|..++.+.+|.
T Consensus 495 ~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~al-----------------Dn~~aR~~vn~~c~~~~iPli~~gt~G~~G~ 557 (1008)
T TIGR01408 495 KIDAHQNRVGPETETIFNDEFYEKLDVVINAL-----------------DNVEARRYVDSRCLAFLKPLLESGTLGTKGN 557 (1008)
T ss_pred EEEEEEeecChhhhhhhhHHHhhCCCEEEECC-----------------CCHHHHHHHHHHHHHcCCCEEEEeccCceee
Confidence 4555544432 12346789999976 2333334566778888888888888777774
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.09 Score=47.14 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=64.6
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHh-CCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc----cCCCcEEE
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLID-RGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI----LLEVDQIY 185 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~-~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~----~~~iD~Vi 185 (263)
+....|.+++|+||+|.+|+... ++++ .|++|+.+.-..++.+-...+.--..-+++-..|+.... -.++|+.|
T Consensus 146 gqpk~GetvvVSaAaGaVGsvvg-QiAKlkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyf 224 (340)
T COG2130 146 GQPKAGETVVVSAAAGAVGSVVG-QIAKLKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYF 224 (340)
T ss_pred cCCCCCCEEEEEecccccchHHH-HHHHhhCCeEEEecCCHHHHHHHHHhcCCceeeecCcccHHHHHHHHCCCCeEEEE
Confidence 34457899999999999998555 5555 799999998655543322221201223344444443332 24699999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH---cCCeEEEEcCcceecCC
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR---VGAKFLLTSTSEVYGDP 237 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~---~~~~iV~vSS~~vyg~~ 237 (263)
-|.|- .+++++.. ...||+.+.-++.|..+
T Consensus 225 eNVGg----------------------~v~DAv~~~ln~~aRi~~CG~IS~YN~~ 257 (340)
T COG2130 225 ENVGG----------------------EVLDAVLPLLNLFARIPVCGAISQYNAP 257 (340)
T ss_pred EcCCc----------------------hHHHHHHHhhccccceeeeeehhhcCCC
Confidence 99862 12333322 12489999999999855
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.09 Score=46.99 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=34.2
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
..++||+++|.|.+..+|+-|+..|+++|+.|+++...
T Consensus 151 i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~ 188 (287)
T PRK14173 151 IPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSK 188 (287)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCC
Confidence 45799999999999999999999999999999887643
|
|
| >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.19 Score=46.77 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=26.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhC--CCeEEEEe
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDR--GDEVIVID 147 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~--G~~V~~l~ 147 (263)
+|+|.|.|+||.||...++.+.+. .++|+++.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLa 34 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALS 34 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEE
Confidence 478999999999999999888765 45777775
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.075 Score=37.67 Aligned_cols=35 Identities=37% Similarity=0.584 Sum_probs=30.4
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~ 153 (263)
+++|.| +|++|.+++..|.+.|.+|+++.+...-.
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 477888 79999999999999999999999875543
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.068 Score=47.66 Aligned_cols=37 Identities=30% Similarity=0.211 Sum_probs=32.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.+.+++|+||+|.+|..+++.+...|.+|++++++.+
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~ 179 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDD 179 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 5789999999999999999888889999998886544
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.069 Score=49.08 Aligned_cols=78 Identities=15% Similarity=0.114 Sum_probs=50.1
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh--cCCCce--EEEEccccccccCCCcEEEE
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRF--ELIRHDVVEPILLEVDQIYH 186 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~--~~~~~v--~~~~~Dv~~~~~~~iD~Vi~ 186 (263)
...+.||++.|.| .|-||+.+++.|...|.+|++.+|............ .....+ .....+-.++.+.+.|+|+.
T Consensus 154 ~~~l~gktvGIiG-~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl 232 (347)
T PLN02928 154 GDTLFGKTVFILG-YGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVL 232 (347)
T ss_pred ccCCCCCEEEEEC-CCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEE
Confidence 3468899999999 799999999999999999999987633211100000 000000 00123334566778899988
Q ss_pred ccC
Q 024766 187 LAC 189 (263)
Q Consensus 187 ~Ag 189 (263)
+..
T Consensus 233 ~lP 235 (347)
T PLN02928 233 CCT 235 (347)
T ss_pred CCC
Confidence 774
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.19 Score=49.11 Aligned_cols=65 Identities=23% Similarity=0.252 Sum_probs=49.3
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------cCCCcEEEEcc
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHLA 188 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------~~~iD~Vi~~A 188 (263)
+++|.| .|-+|+.++++|.++|++|++++.+++..++ . ....+..+.+|.+|+. .++.|.++-+.
T Consensus 419 hiiI~G-~G~~G~~la~~L~~~g~~vvvId~d~~~~~~-~----~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~ 489 (558)
T PRK10669 419 HALLVG-YGRVGSLLGEKLLAAGIPLVVIETSRTRVDE-L----RERGIRAVLGNAANEEIMQLAHLDCARWLLLTI 489 (558)
T ss_pred CEEEEC-CChHHHHHHHHHHHCCCCEEEEECCHHHHHH-H----HHCCCeEEEcCCCCHHHHHhcCccccCEEEEEc
Confidence 688888 7999999999999999999999976443222 2 2346889999999873 34678776654
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.088 Score=49.39 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=47.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.+.|++|+|.| .|.||..++..+...|.+|+++++++....+... ..+.+. ++ ++.+.+.|+||.+.|
T Consensus 192 ~l~Gk~VvViG-~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~-----~G~~v~--~l-eeal~~aDVVItaTG 259 (406)
T TIGR00936 192 LIAGKTVVVAG-YGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM-----DGFRVM--TM-EEAAKIGDIFITATG 259 (406)
T ss_pred CCCcCEEEEEC-CCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh-----cCCEeC--CH-HHHHhcCCEEEECCC
Confidence 36899999999 8999999999999999999999877643322211 112222 22 334566788887764
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.1 Score=46.60 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=33.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEec
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN 148 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r 148 (263)
..++||+|+|.|.+..+|+.++..|+++|+.|.++..
T Consensus 153 i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs 189 (285)
T PRK14191 153 IEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHI 189 (285)
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeC
Confidence 4678999999999999999999999999999988753
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.054 Score=48.60 Aligned_cols=37 Identities=22% Similarity=0.127 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.+.+|+|+|++|.+|..++..+...|.+|++++++.+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~ 174 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDE 174 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 5779999999999999999888888999998887644
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.23 Score=44.96 Aligned_cols=88 Identities=20% Similarity=0.267 Sum_probs=54.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPV 194 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~ 194 (263)
+.+|.|.||||++|.+|++.|.+... ++..+..+... .. +..+..+.++|++|-+....
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~------------~~-----~~~~~~~~~~DvvFlalp~~--- 61 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK------------DA-----AARRELLNAADVAILCLPDD--- 61 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC------------cc-----cCchhhhcCCCEEEECCCHH---
Confidence 35899999999999999999988864 44444332111 00 12223446799999887310
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCc------ceecCCC
Q 024766 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS------EVYGDPL 238 (263)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~------~vyg~~~ 238 (263)
-...+...+.+.|+++|=.|+. .+||-+.
T Consensus 62 ---------------~s~~~~~~~~~~g~~VIDlSadfRl~~~~~yglPE 96 (313)
T PRK11863 62 ---------------AAREAVALIDNPATRVIDASTAHRTAPGWVYGFPE 96 (313)
T ss_pred ---------------HHHHHHHHHHhCCCEEEECChhhhcCCCCeEEcCc
Confidence 1123445555667788888875 3566443
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.084 Score=48.09 Aligned_cols=73 Identities=23% Similarity=0.186 Sum_probs=44.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC--ccchhhhhhhcCCCceEEEEccccc-cccCCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF--TGRKDNLVHHFRNPRFELIRHDVVE-PILLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~--~~~~~~~~~~~~~~~v~~~~~Dv~~-~~~~~iD~Vi~~Ag 189 (263)
.+.+|+|+|+ |.||...+..+...|++|++++++. +.+.+.+. .++...+.....|+.+ ....++|+||.++|
T Consensus 172 ~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~-~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g 247 (355)
T cd08230 172 NPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE-ELGATYVNSSKTPVAEVKLVGEFDLIIEATG 247 (355)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-HcCCEEecCCccchhhhhhcCCCCEEEECcC
Confidence 5789999985 9999999988888899999998742 22222222 2222111111111111 12245899999996
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.053 Score=46.45 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=31.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
..+.+++|+|+++ +|..+++.+...|.+|++++++.+
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~ 169 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDE 169 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHH
Confidence 3567999999988 999999999999999999887643
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.085 Score=48.05 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=35.0
Q ss_pred ccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
.+..+.||++-|.| .|-||+++++.+...|.+|++.++.
T Consensus 136 ~g~el~gkTvGIiG-~G~IG~~va~~l~afgm~v~~~d~~ 174 (324)
T COG0111 136 RGTELAGKTVGIIG-LGRIGRAVAKRLKAFGMKVIGYDPY 174 (324)
T ss_pred ccccccCCEEEEEC-CCHHHHHHHHHHHhCCCeEEEECCC
Confidence 34467899999999 8999999999999999999999883
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.11 Score=46.25 Aligned_cols=37 Identities=22% Similarity=0.380 Sum_probs=33.8
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEec
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN 148 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r 148 (263)
..++||+++|.|.+..+|+-|+..|.++|+.|+++..
T Consensus 154 i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs 190 (278)
T PRK14172 154 IDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHS 190 (278)
T ss_pred CCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCC
Confidence 4679999999999999999999999999999988764
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.11 Score=46.44 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=34.8
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
...+.||+++|.|.+..+|+-|+..|+++|+.|+++...
T Consensus 154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~ 192 (284)
T PRK14177 154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK 192 (284)
T ss_pred CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC
Confidence 346799999999999999999999999999999987643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 263 | ||||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 1e-51 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 8e-51 | ||
| 3icp_A | 312 | Crystal Structure Of Udp-Galactose 4-Epimerase Leng | 2e-14 | ||
| 3ehe_A | 313 | Crystal Structure Of Udp-Glucose 4 Epimerase (Gale- | 7e-11 | ||
| 3aw9_A | 308 | Structure Of Udp-Galactose 4-Epimerase Mutant Lengt | 4e-10 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 3e-08 | ||
| 1sb8_A | 352 | Crystal Structure Of Pseudomonas Aeruginosa Udp-N-A | 8e-08 | ||
| 2q1w_A | 333 | Crystal Structure Of The Bordetella Bronchiseptica | 8e-08 | ||
| 3lu1_A | 364 | Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4- | 9e-08 | ||
| 3ru9_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-07 | ||
| 3ru7_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-07 | ||
| 3ruc_A | 351 | Specific Recognition Of N-Acetylated Substrates And | 1e-07 | ||
| 1r66_A | 337 | Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydr | 2e-07 | ||
| 2c20_A | 330 | Crystal Structure Of Udp-Glucose 4-Epimerase Length | 3e-07 | ||
| 1db3_A | 372 | E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | 3e-07 | ||
| 1r6d_A | 337 | Crystal Structure Of Desiv Double Mutant (Dtdp-Gluc | 4e-07 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 4e-07 | ||
| 2p5u_A | 311 | Crystal Structure Of Thermus Thermophilus Hb8 Udp-G | 2e-06 | ||
| 1kep_A | 348 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 2e-06 | ||
| 2hun_A | 336 | Crystal Structure Of Hypothetical Protein Ph0414 Fr | 3e-06 | ||
| 1kvs_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 4e-06 | ||
| 3slg_A | 372 | Crystal Structure Of Pbgp3 Protein From Burkholderi | 7e-06 | ||
| 1kvu_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 8e-06 | ||
| 2udp_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 8e-06 | ||
| 2pzk_A | 330 | Crystal Structure Of The Bordetella Bronchiseptica | 8e-06 | ||
| 1lrj_A | 338 | Crystal Structure Of E. Coli Udp-Galactose 4-Epimer | 9e-06 | ||
| 1lrk_A | 338 | Crystal Structure Of Escherichia Coli Udp-Galactose | 1e-05 | ||
| 1a9y_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 1e-05 | ||
| 1kvr_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 1e-05 | ||
| 1a9z_A | 338 | Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEX | 1e-05 | ||
| 1kvq_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 1e-05 | ||
| 1kvt_A | 338 | Udp-Galactose 4-Epimerase Complexed With Udp-Phenol | 2e-05 | ||
| 1bxk_A | 355 | Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = | 2e-05 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 2e-05 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 5e-05 | ||
| 3vps_A | 321 | Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5 | 6e-05 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 9e-05 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 1e-04 | ||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 1e-04 | ||
| 1z75_A | 358 | Crystal Structure Of Arna Dehydrogenase (decarboxyl | 1e-04 | ||
| 1z74_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 1e-04 | ||
| 1z7b_A | 358 | Crystal Structure Of E.Coli Arna Dehydrogenase (Dec | 1e-04 | ||
| 1u9j_A | 358 | Crystal Structure Of E. Coli Arna (Pmri) Decarboxyl | 1e-04 | ||
| 2bll_A | 345 | Apo-Structure Of The C-Terminal Decarboxylase Domai | 1e-04 | ||
| 1z7e_A | 660 | Crystal Structure Of Full Length Arna Length = 660 | 1e-04 | ||
| 3sxp_A | 362 | Crystal Structure Of Helicobacter Pylori Adp-L-Glyc | 1e-04 | ||
| 1t2a_A | 375 | Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydr | 1e-04 | ||
| 1z73_A | 358 | Crystal Structure Of E. Coli Arna Dehydrogenase (de | 2e-04 | ||
| 2pzj_A | 377 | Crystal Structure Of The Bordetella Bronchiseptica | 6e-04 |
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase Length = 312 | Back alignment and structure |
|
| >pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From Archaeoglobus Fulgidus Length = 313 | Back alignment and structure |
|
| >pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant Length = 308 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Udp-N-Acetylglucosamine 4- Epimerase Complexed With Udp-N-Acetylgalactosamine Length = 352 | Back alignment and structure |
|
| >pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmh In Complex With Nad+ Length = 333 | Back alignment and structure |
|
| >pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac 4-Epimerase Length = 364 | Back alignment and structure |
|
| >pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain Flexibility In Wbgu: A Udp-Galnac 4-Epimerase Length = 351 | Back alignment and structure |
|
| >pdb|1R66|A Chain A, Crystal Structure Of Desiv (Dtdp-Glucose 4,6-Dehydratase) From Streptomyces Venezuelae With Nad And Tyd Bound Length = 337 | Back alignment and structure |
|
| >pdb|2C20|A Chain A, Crystal Structure Of Udp-Glucose 4-Epimerase Length = 330 | Back alignment and structure |
|
| >pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase Length = 372 | Back alignment and structure |
|
| >pdb|1R6D|A Chain A, Crystal Structure Of Desiv Double Mutant (Dtdp-Glucose 4,6- Dehydratase) From Streptomyces Venezuelae With Nad And Dau Bound Length = 337 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose 4- Epimerase Complex With Nad Length = 311 | Back alignment and structure |
|
| >pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound Length = 348 | Back alignment and structure |
|
| >pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From Pyrococcus Horikoshii Ot3 Length = 336 | Back alignment and structure |
|
| >pdb|1KVS|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|3SLG|A Chain A, Crystal Structure Of Pbgp3 Protein From Burkholderia Pseudomallei Length = 372 | Back alignment and structure |
|
| >pdb|1KVU|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmg In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|1LRJ|A Chain A, Crystal Structure Of E. Coli Udp-Galactose 4-Epimerase Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1LRK|A Chain A, Crystal Structure Of Escherichia Coli Udp-Galactose 4-Epimerase Mutant Y299c Complexed With Udp-N-Acetylglucosamine Length = 338 | Back alignment and structure |
|
| >pdb|1A9Y|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Glucose Length = 338 | Back alignment and structure |
|
| >pdb|1KVR|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1A9Z|A Chain A, Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED WITH UDP- Galactose Length = 338 | Back alignment and structure |
|
| >pdb|1KVQ|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1KVT|A Chain A, Udp-Galactose 4-Epimerase Complexed With Udp-Phenol Length = 338 | Back alignment and structure |
|
| >pdb|1BXK|A Chain A, Dtdp-Glucose 4,6-Dehydratase From E. Coli Length = 355 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|3VPS|A Chain A, Structure Of A Novel Nad Dependent-Ndp-Hexosamine 5,6-Dehydratase, Tuna, Involved In Tunicamycin Biosynthesis Length = 321 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase) Domain, R619m Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619y Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase (Decarboxylase) Domain, R619e Mutant Length = 358 | Back alignment and structure |
|
| >pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase Domain Length = 358 | Back alignment and structure |
|
| >pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of Arna Length = 345 | Back alignment and structure |
|
| >pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna Length = 660 | Back alignment and structure |
|
| >pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad, Hp0859) Length = 362 | Back alignment and structure |
|
| >pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase Length = 375 | Back alignment and structure |
|
| >pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase (decarboxylase) Domain, S433a Mutant Length = 358 | Back alignment and structure |
|
| >pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme Wbmf In Complex With Nad+ Length = 377 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 280 bits (717), Expect = 3e-94
Identities = 104/163 (63%), Positives = 121/163 (74%)
Query: 92 SFQFHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151
S H S G + + + R RI++TGGAGFVGSHL DKL+ G EV V+DNFFT
Sbjct: 3 SSHHHHHHSSGRENLYFQGHMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFT 62
Query: 152 GRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGT 211
GRK N+ H + FELI HDVVEP+ +EVDQIYHLA PASP +Y YNP+KT+KTN +GT
Sbjct: 63 GRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGT 122
Query: 212 LNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIG 254
LNMLGLAKRVGA+ LL STSEVYGDP HPQ E YWG+VNPIG
Sbjct: 123 LNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIG 165
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 246 bits (629), Expect = 1e-80
Identities = 39/169 (23%), Positives = 67/169 (39%), Gaps = 13/169 (7%)
Query: 95 FHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK 154
H G + + ++++ G GF+G HL ++++ D + + T R
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRL 62
Query: 155 DNLVHHFRNPRFELIRHDV------VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNV 208
+LV H R D+ VE + + D I L A+P Y P++ + +
Sbjct: 63 GDLVKH---ERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDF 119
Query: 209 MGTLNMLGLAKRVGAKFLLTSTSEVYG---DPLEHPQKETY-WGNVNPI 253
L ++ A + G + STSEVYG D P +G +N
Sbjct: 120 EANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKP 168
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 243 bits (622), Expect = 6e-80
Identities = 34/146 (23%), Positives = 66/146 (45%), Gaps = 12/146 (8%)
Query: 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-- 173
+R+++ G GF+G+HL ++L+ EV +D D + +P F + D+
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIG----SDAISRFLNHPHFHFVEGDISI 56
Query: 174 ----VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTS 229
+E + + D + L A+P+ Y NP++ + + L ++ + + + S
Sbjct: 57 HSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPS 116
Query: 230 TSEVYGDPLEHPQKETYWG-NVNPIG 254
TSEVYG + E + V P+
Sbjct: 117 TSEVYGMCSDKYFDEDHSNLIVGPVN 142
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 220 bits (562), Expect = 2e-70
Identities = 32/148 (21%), Positives = 61/148 (41%), Gaps = 10/148 (6%)
Query: 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV 173
L+I +TG GF+ SH+ +L G VI D + +++ F L+ V
Sbjct: 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASD---WKKNEHMTEDMFCDEFHLVDLRV 83
Query: 174 VE---PILLEVDQIYHLACPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLT 228
+E + VD +++LA + + + N + N M + NM+ A+ G +F
Sbjct: 84 MENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYA 143
Query: 229 STSEVYGDPLEHPQKETY--WGNVNPIG 254
S++ +Y + + + P
Sbjct: 144 SSACIYPEFKQLETTNVSLKESDAWPAE 171
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 210 bits (536), Expect = 1e-66
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 15/173 (8%)
Query: 94 QFHRTSSFGAKTGRVPVGIGRRRL---RIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNF 149
H +S + +PV + +L ++V GGAGFVGS+LV +L++ G ++V V+DN
Sbjct: 7 HHHHSSGLVPRGSHMPVIMNASKLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNL 66
Query: 150 FTGRKDNLVHHFRNPRFELIRHDVVEPILL-----EVDQIYHLACPASPVHYKYNPVKTI 204
+ K N+ H P + + LL E D ++HLA ++P+
Sbjct: 67 LSAEKINVPDH---PAVRFSETSITDDALLASLQDEYDYVFHLATYHGNQSSIHDPLADH 123
Query: 205 KTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGD-PLEHPQKETYWGNVNPIG 254
+ N + TL + K K + ++ + + + V+
Sbjct: 124 ENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHN 176
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 2e-60
Identities = 44/141 (31%), Positives = 63/141 (44%), Gaps = 15/141 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK---DNLVHHFRNPRFELIRHDVV 174
RI++TGGAGF+G HL L+ G+EV V+D+ + P EL D+
Sbjct: 9 RILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS 68
Query: 175 EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEV 233
+V +YHLA S P+ + NV ++L L VG K ++ ST EV
Sbjct: 69 -----DVRLVYHLASHKSVPRSFKQPLDYL-DNVDSGRHLLALCTSVGVPKVVVGSTCEV 122
Query: 234 YGDPLEHPQKETYWGNVNPIG 254
YG P E +P+
Sbjct: 123 YGQADTLPTPED-----SPLS 138
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 181 bits (463), Expect = 2e-56
Identities = 52/140 (37%), Positives = 73/140 (52%), Gaps = 11/140 (7%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
RIVVTGGAGF+GSHLVDKL++ G EV+V+DN +GR++ + NP EL D+ +
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKDYS 56
Query: 178 LLE---VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEV 233
D ++H A P+ NV+ T N+L A++ G + + S+S V
Sbjct: 57 WGAGIKGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTV 116
Query: 234 YGDPLEHPQKETYWGNVNPI 253
YGD P E PI
Sbjct: 117 YGDADVIPTPEEE--PYKPI 134
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 2e-41
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 19/162 (11%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL------VHHFRNPRFELIRH 171
++TG AGF+GS+L++ L+ +V+ +DNF TG + NL V + F+ I+
Sbjct: 29 VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQG 88
Query: 172 DV-----VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-F 225
D+ VD + H A S +P+ + TN+ G LNML A+ + F
Sbjct: 89 DIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSF 148
Query: 226 LLTSTSEVYGDPLEHPQKETYWGN-VNP------IGELLAAT 260
++S YGD P+ E G ++P + EL A
Sbjct: 149 TYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNELYADV 190
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 141 bits (359), Expect = 8e-41
Identities = 30/155 (19%), Positives = 49/155 (31%), Gaps = 24/155 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+I VTGG GF+G ++V+ + + G+ I++ + N +E D
Sbjct: 4 KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKAIND--------YEYRVSDYTLED 55
Query: 178 LLE----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
L+ VD + HLA + N + T N+ + ST
Sbjct: 56 LINQLNDVDAVVHLAATRG-SQG---KISEFHDNEILTQNLYDACYENNISNIVYASTIS 111
Query: 233 VYGDPLEHPQKETYWGN-VNP------IGELLAAT 260
Y D P E E +
Sbjct: 112 AYSDETSLPWNEKELPLPDLMYGVSKLACEHIGNI 146
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 7e-39
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 17/152 (11%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
++ +TG G +GSH+ + L++RGD+V+ IDNF TGR+++L H P + + +
Sbjct: 23 KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH---PNLTFVEGSIADHA 79
Query: 178 LLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTS 229
L+ D + H A + TN +G N++ AK+ F+
Sbjct: 80 LVNQLIGDLQPDAVVHTAASYKDPD---DWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQ 136
Query: 230 TSEVYGD-PLEHPQKETYWGNVNPIGELLAAT 260
T+ YG P++ P + + NP A +
Sbjct: 137 TALCYGVKPIQQPVRLDH--PRNPANSSYAIS 166
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 2e-38
Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 13/141 (9%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
IVVTGGAGF+GSH+VDKL + +E++VIDN +G ++ + N L++ D+
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSE-SNEIVVIDNLSSGNEEFV-----NEAARLVKADLAADD 56
Query: 178 LLE----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSE 232
+ + ++++H+A NP + + NV+ T +L ++ G + TSTS
Sbjct: 57 IKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTST 116
Query: 233 VYGDPLEHPQKETYWGNVNPI 253
VYG+ P E Y +PI
Sbjct: 117 VYGEAKVIPTPEDY--PTHPI 135
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 134 bits (340), Expect = 1e-37
Identities = 53/163 (32%), Positives = 79/163 (48%), Gaps = 21/163 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL------VHHFRNPRFELIRH 171
++TG AGF+GS+L++KL+ VI +DNF TG + NL V + RF I
Sbjct: 27 TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEG 86
Query: 172 DV-----VEPILLEVDQIYHLACPASPVHYKY-NPVKTIKTNVMGTLNMLGLAKRVGAK- 224
D+ E ++ VD + H A S V +P+ T TN+ G LN+L AK +
Sbjct: 87 DIRDLTTCEQVMKGVDHVLHQAALGS-VPRSIVDPITTNATNITGFLNILHAAKNAQVQS 145
Query: 225 FLLTSTSEVYGDPLEHPQKETYWGN-VNP------IGELLAAT 260
F ++S YGD P+ E GN ++P + E+ A
Sbjct: 146 FTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNEIYAQV 188
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 3e-35
Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 22/153 (14%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVH-----HFRN---PRFE 167
I++TGGAGFVGS+L + +V+V+D F + + HF+N + E
Sbjct: 12 TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE 71
Query: 168 LIRHDVVEPILLE------VDQIYHL-ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR 220
+I D+ P+ L D ++H A + + N +KTN LN+L +A+
Sbjct: 72 VIAADINNPLDLRRLEKLHFDYLFHQAAVSDTTML---NQELVMKTNYQAFLNLLEIARS 128
Query: 221 VGAKFLLTSTSEVYGDPLEHPQKETYWGN-VNP 252
AK + S++ VYG+ + P + N
Sbjct: 129 KKAKVIYASSAGVYGNT-KAPNVVGKNESPENV 160
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 7e-35
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 13/142 (9%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEP 176
I+VTGGAGF+GS++V L D+G +++V+DN G K NLV N + + D +
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL--NIADYMDKEDFLIQ 59
Query: 177 ILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231
I+ V+ I+H +S + + + N + +L FL S++
Sbjct: 60 IMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLYASSA 117
Query: 232 EVYGDPLEHPQKETYWGNVNPI 253
YG + P+
Sbjct: 118 ATYGGRTSDFIESR--EYEKPL 137
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-34
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 13/143 (9%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVE 175
I+VTGGAGF+GS++V L D+G +++V+DN G K NLV N + + D +
Sbjct: 48 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL--NIADYMDKEDFLI 105
Query: 176 PILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230
I+ V+ I+H +S + + + N + +L FL S+
Sbjct: 106 QIMAGEEFGDVEAIFHEGACSSTTEWDGKYM--MDNNYQYSKELLHYCLEREIPFLYASS 163
Query: 231 SEVYGDPLEHPQKETYWGNVNPI 253
+ YG + P+
Sbjct: 164 AATYGGRTSDFIESRE--YEKPL 184
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-32
Identities = 31/137 (22%), Positives = 54/137 (39%), Gaps = 20/137 (14%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
R++VTG AG VGS + L EV + D G + E++ D+
Sbjct: 4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAAEAH--------EEIVACDLADAQ 55
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPV-KTIKTNVMGTLNMLGLAKRVGAK-FLLTST 230
V ++ + D I HL V P ++ N++G N+ A+ +G + S+
Sbjct: 56 AVHDLVKDCDGIIHLG--GVSV---ERPWNDILQANIIGAYNLYEAARNLGKPRIVFASS 110
Query: 231 SEVYGDPLEHPQKETYW 247
+ G + +T
Sbjct: 111 NHTIGYYPRTTRIDTEV 127
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 4e-31
Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 25/125 (20%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
IV+TG GFVG +L L D + + + + +E
Sbjct: 2 NIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ-------------------TKEEELES 42
Query: 177 ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236
LL+ D I HLA P + + NV ++L + R K + +S +
Sbjct: 43 ALLKADFIVHLAGVNRPE----HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQAT 98
Query: 237 PLEHP 241
++P
Sbjct: 99 Q-DNP 102
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 7e-31
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 22/140 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
RI++TGGAG +GS+L++ + +G E++VIDNF TG+++ L +I V +
Sbjct: 22 RILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLP---PVAGLSVIEGSVTDAG 78
Query: 178 LLE-------VDQIYHLA----CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-F 225
LLE + H A P NV G++N+ A + G K
Sbjct: 79 LLERAFDSFKPTHVVHSAAAYKDPDDWAEDAAT-------NVQGSINVAKAASKAGVKRL 131
Query: 226 LLTSTSEVYGDPLEHPQKET 245
L T+ YG P P
Sbjct: 132 LNFQTALCYGRPATVPIPID 151
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 9e-31
Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 16/181 (8%)
Query: 82 HALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGD 141
+ +Q Q+ + S ++ P RRR R+++ G GF+G+HL ++L+
Sbjct: 285 ITMQGSQLAQTLGLVQGSRLNSQ----PACTARRRTRVLILGVNGFIGNHLTERLLREDH 340
Query: 142 -EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV------VEPILLEVDQIYHLACPASPV 194
EV +D D + +P F + D+ +E + + D + L A+P+
Sbjct: 341 YEVYGLDI----GSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPI 396
Query: 195 HYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNV-NPI 253
Y NP++ + + L ++ + + + STSEVYG + E + + P+
Sbjct: 397 EYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPV 456
Query: 254 G 254
Sbjct: 457 N 457
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 3e-30
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 23/142 (16%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
R++VTGGAGF+GSH+V+ L+ RG EV V+DN TG+++N+ R D+ +
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV-----PKGVPFFRVDLRDKE 56
Query: 178 LLE-------VDQIYHLAC----PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KF 225
+E + H A S V +PV + N++G LN+L ++ G K
Sbjct: 57 GVERAFREFRPTHVSHQAAQASVKVS-VE---DPVLDFEVNLLGGLNLLEACRQYGVEKL 112
Query: 226 LLTSTSE-VYGD-PLEHPQKET 245
+ ST +YG+ P +ET
Sbjct: 113 VFASTGGAIYGEVPEGERAEET 134
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 5e-29
Identities = 28/136 (20%), Positives = 52/136 (38%), Gaps = 16/136 (11%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+I++ G G +G+ L KL G E ++ + D + + FE++ + ++
Sbjct: 4 KILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTDVV----NSGPFEVV--NALDF 57
Query: 177 ILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLT 228
+E + IY +A S + NP N+ ++L LAK K
Sbjct: 58 NQIEHLVEVHKITDIYLMAALLS-ATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWP 116
Query: 229 STSEVYGDPLEHPQKE 244
S+ V+G
Sbjct: 117 SSIAVFGPTTPKENTP 132
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 6e-29
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 19/135 (14%)
Query: 119 IVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
I+VTG +G +G+ LV L ++ G + ++ + + I DV
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQR---------DTGGIKFITLDVSNRD 52
Query: 178 LLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTS 229
++ +D I+HLA S + +P K N+ GT N+L AK+ K ++ S
Sbjct: 53 EIDRAVEKYSIDAIFHLAGILS-AKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPS 111
Query: 230 TSEVYGDPLEHPQKE 244
T V+G +
Sbjct: 112 TIGVFGPETPKNKVP 126
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 8e-28
Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 25/147 (17%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG-------DEVIVIDNFFTGRKDNLVHHFRNPRFELIR 170
I + G AG VG L +L+ G ++ +ID F + +
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGF-----SGAVDARA 70
Query: 171 HDVVEPILLE------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA- 223
D+ P E D I+HLA S + K + N+ GT + +
Sbjct: 71 ADLSAPGEAEKLVEARPDVIFHLAAIVSGEAEL-DFDKGYRINLDGTRYLFDAIRIANGK 129
Query: 224 -----KFLLTSTSEVYGDPLEHPQKET 245
+ + TS+ V+G PL +P +
Sbjct: 130 DGYKPRVVFTSSIAVFGAPLPYPIPDE 156
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-27
Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 19/136 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
R++VTG AG +G + ++L + + + D L P E ++ D+
Sbjct: 5 RLLVTGAAGQLGRVMRERLAPMAEILRLADL------SPLDPA--GPNEECVQCDLADAN 56
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTS 231
V ++ D I HL V + + ++ N++G N+ A+ G + S++
Sbjct: 57 AVNAMVAGCDGIVHLG--GISVEKPFEQI--LQGNIIGLYNLYEAARAHGQPRIVFASSN 112
Query: 232 EVYGD-PLEHPQKETY 246
G P
Sbjct: 113 HTIGYYPQTERLGPDV 128
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-26
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 17/151 (11%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHHFRNPRFELIRHDV--- 173
++++TGG GF+GS+L + +G ++IV DN G DNL FE + D+
Sbjct: 3 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 62
Query: 174 --VEPILLE--VDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAKR--VGAK 224
V ++ + D +HL A V NP + NV GTLN+L ++
Sbjct: 63 NDVTRLITKYMPDSCFHL---AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCN 119
Query: 225 FLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 255
+ +ST++VYGD LE + + +
Sbjct: 120 IIYSSTNKVYGD-LEQYKYNETETRYTCVDK 149
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 7e-24
Identities = 34/161 (21%), Positives = 50/161 (31%), Gaps = 35/161 (21%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN------------------LVH 159
R++V GG G+ G L + EV ++DN D+
Sbjct: 13 RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 72
Query: 160 HFRNPRFELIRHDVVEPILLE-------VDQIYHLACPASP-----VHYKYNPVKTIKTN 207
EL D+ + L D + H + + V T N
Sbjct: 73 ALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFG--EQRSAPYSMIDRSRAVYTQHNN 130
Query: 208 VMGTLNMLGLAKR--VGAKFLLTSTSEVYGDPLEHPQKETY 246
V+GTLN+L K + T YG P +E Y
Sbjct: 131 VIGTLNVLFAIKEFGEECHLVKLGTMGEYGTP-NIDIEEGY 170
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 3e-22
Identities = 20/154 (12%), Positives = 47/154 (30%), Gaps = 14/154 (9%)
Query: 106 GRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPR 165
P+ ++ V G G +G H + G ++++I R + +
Sbjct: 3 DEQPLSRPGAHVKYAVLGATGLLGHHAARAIRAAGHDLVLIH-----RPSSQIQRLAYLE 57
Query: 166 FELIRHDVVEPILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR 220
E ++++ LE +D + A ++ + + + T +
Sbjct: 58 PECRVAEMLDHAGLERALRGLDGVIFSAGYYPSRPRRWQEE--VASALGQTNPFYAACLQ 115
Query: 221 VGAK-FLLTSTSEVYG-DPLEHPQKETYWGNVNP 252
L ++ P P E + + P
Sbjct: 116 ARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLP 149
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 86.0 bits (214), Expect = 8e-20
Identities = 48/145 (33%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDV- 173
I+VTGGAGF+GS+ V + + V V+D + G K NL R EL+ D+
Sbjct: 6 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEA-ILGDRVELVVGDIA 64
Query: 174 ----VEPILLEVDQIYHLACPA-SPV----HYKYNPVKTIKTNVMGTLNMLGLAKRVGAK 224
V+ + + D I H A A S + +P I TN +GT +L A++ +
Sbjct: 65 DAELVDKLAAKADAIVHYA--AESHNDNSLN---DPSPFIHTNFIGTYTLLEAARKYDIR 119
Query: 225 FLLTSTSEVYGD-PLEHPQKETYWG 248
F ST EVYGD PL G
Sbjct: 120 FHHVSTDEVYGDLPLREDLPGHGEG 144
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 1e-19
Identities = 47/142 (33%), Positives = 68/142 (47%), Gaps = 24/142 (16%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG------DEVIVIDNF-FTGRKDNLVHHFRNPRFELIR 170
R++VTGGAGF+GSH V +L+ DEVIV+D+ + G + NL +PR +
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 171 HDV-----VEPILLEVDQIYHLACPA-SPV----HYKYNPVKTIKTNVMGTLNMLGLAKR 220
D+ + L VD I H A A S V +TNV GT +L A
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFA--AESHVDRSIA---GASVFTETNVQGTQTLLQCAVD 116
Query: 221 VGA-KFLLTSTSEVYGDPLEHP 241
G + + ST++VYG ++
Sbjct: 117 AGVGRVVHVSTNQVYGS-IDSG 137
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 84.4 bits (210), Expect = 3e-19
Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 31/144 (21%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
I++ GGAG++GSH V KL+D G V+V+DN TG +D + + D+ +
Sbjct: 4 ILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI-----TEGAKFYNGDLRDKAF 58
Query: 179 LE-------VDQIYHLACPAS---------PVHYKYNPVKTIKTNVMGTLNMLGLAKRVG 222
L ++ + H A A P+ Y N NV G L +L +
Sbjct: 59 LRDVFTQENIEAVMHFA--ADSLVGVSMEKPLQYYNN-------NVYGALCLLEVMDEFK 109
Query: 223 AK-FLLTSTSEVYGDPLEHPQKET 245
F+ +ST+ YG+ E
Sbjct: 110 VDKFIFSSTAATYGEVDVDLITEE 133
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 4e-19
Identities = 43/139 (30%), Positives = 72/139 (51%), Gaps = 21/139 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDV- 173
+++VTGG GF+GS+ + ++++ EVI ID + NL +PR+ ++ DV
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVA 64
Query: 174 ----VEPILLEVDQIYHLACPA-SPV----HYKYNPVKTIKTNVMGTLNMLGLAKR--VG 222
V+ ++ +VD + HLA A S V +P + +NV+GT +L +R
Sbjct: 65 DYELVKELVRKVDGVVHLA--AESHVDRSIS---SPEIFLHSNVIGTYTLLESIRRENPE 119
Query: 223 AKFLLTSTSEVYGDPLEHP 241
+F+ ST EVYGD +
Sbjct: 120 VRFVHVSTDEVYGD-ILKG 137
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 7e-18
Identities = 45/157 (28%), Positives = 71/157 (45%), Gaps = 21/157 (13%)
Query: 96 HRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNF-FTG 152
H S G G + + I+VTGGAGF+GS+ V ++ ++I D ++G
Sbjct: 4 HHHHSSGVDLGTENLYFQSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSG 63
Query: 153 RKDNLVHHFRNPRFELIRHDVVEPILLE-------VDQIYHLACPA-SPV----HYKYNP 200
+N+ +P + ++ ++ LLE V I + A A S V NP
Sbjct: 64 NLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQVIVNFA--AESHVDRSIE---NP 118
Query: 201 VKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYGD 236
+ TNV+GT+ +L L K+ + ST EVYG
Sbjct: 119 IPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGS 155
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 3e-16
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 14/136 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
R ++TG AGFVG +L + L ++ EV + N+ +++ V+ +
Sbjct: 14 RALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAKLPNVEMIS----LDIMDSQRVKKV 69
Query: 178 LLEV--DQIYHLACPA-SPVHYKY-NPVKTIKTNVMGTLNMLGLAKRVG--AKFLLTSTS 231
+ ++ D I+HLA A S V + N T TNV GTL++L + + L +S
Sbjct: 70 ISDIKPDYIFHLA--AKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSS 127
Query: 232 EVYG--DPLEHPQKET 245
E YG P E P E
Sbjct: 128 EEYGMILPEESPVSEE 143
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 1e-15
Identities = 47/148 (31%), Positives = 69/148 (46%), Gaps = 30/148 (20%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDV-- 173
+I++TGGAGF+GS +V +I D V+ ID + G ++L + R+ D+
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 174 ---VEPILLE--VDQIYHLACPA-SPV----HYKYNPVKTIKTNVMGTLNML-------- 215
+ I + D + HLA A S V P I+TN++GT +L
Sbjct: 62 SAEITRIFEQYQPDAVMHLA--AESHVDRSIT---GPAAFIETNIVGTYALLEVARKYWS 116
Query: 216 --GLAKRVGAKFLLTSTSEVYGDPLEHP 241
G K+ +F ST EVYGD L HP
Sbjct: 117 ALGEDKKNNFRFHHISTDEVYGD-LPHP 143
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 72.1 bits (178), Expect = 7e-15
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 25/155 (16%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVE 175
I+VTGGAG++GSH +L+ G +V++ DN +++ + + DV +
Sbjct: 7 TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSD 66
Query: 176 PILLE-------VDQIYHLA-------CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV 221
L + H A A P+ Y N N+ L++L + +
Sbjct: 67 ERALARIFDAHPITAAIHFAALKAVGESVAKPIEYYRN-------NLDSLLSLLRVMRER 119
Query: 222 GAKFLLTSTS-EVYGDPLEHPQKETY-WGNVNPIG 254
K ++ S+S VYG P P ET+ NP G
Sbjct: 120 AVKRIVFSSSATVYGVPERSPIDETFPLSATNPYG 154
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 70.9 bits (175), Expect = 2e-14
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 24/145 (16%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVE 175
R++VTGG+G++GSH +L+ G +VI++DN ++ L + + D+
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 176 PILLE-------VDQIYHLAC-------PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV 221
L+ +D + H A P+ Y N NV GTL ++ +
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDN-------NVNGTLRLISAMRAA 114
Query: 222 GAKFLLTSTSE-VYGDPLEHPQKET 245
K + S+S VYGD + P E+
Sbjct: 115 NVKNFIFSSSATVYGDNPKIPYVES 139
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 4e-14
Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 30/151 (19%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--------VHHFRNPRFELI 169
+++VTGGAG++GSH V +L++ G +VIDNF + V E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPILLE-------VDQIYHLA-------CPASPVHYKYNPVKTIKTNVMGTLNML 215
D+++ L+ + H A P+ Y N+ GT+ +L
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV-------NLTGTIQLL 116
Query: 216 GLAKRVGAKFLLTSTSE-VYGDPLEHPQKET 245
+ K G K L+ S+S VYG+P P E
Sbjct: 117 EIMKAHGVKNLVFSSSATVYGNPQYLPLDEA 147
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 6e-14
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 24/143 (16%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVE 175
++VTGGAG++GSH V +LI+ G + +V DN D++ + D+ +
Sbjct: 13 IVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD 72
Query: 176 PILLE-------VDQIYHLA-------CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV 221
LE +D + H A P+ Y Y N++GT+ +L L ++
Sbjct: 73 RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRY-Y------HNNILGTVVLLELMQQY 125
Query: 222 GAKFLLTSTSE-VYGDPLEHPQK 243
+ S+S VYGD P
Sbjct: 126 NVSKFVFSSSATVYGDATRFPNM 148
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-13
Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 26/153 (16%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVI--VIDNFFTGRKDNLVHHFRNP---RFE-LIRH 171
++VTG GFV SH+V++L++ G +V + NL + RFE +
Sbjct: 13 LVLVTGANGFVASHVVEQLLEHGYKVRGTARS---ASKLANLQKRWDAKYPGRFETAVVE 69
Query: 172 DVVEP-----ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--K 224
D+++ ++ + H+ AS V + + + + GTLN L A + +
Sbjct: 70 DMLKQGAYDEVIKGAAGVAHI---ASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKR 126
Query: 225 FLLT-STSEVYGDPLEHPQK---ETYWGNVNPI 253
F+LT ST E W N
Sbjct: 127 FVLTSSTVSALIPKPNVEGIYLDEKSW---NLE 156
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-13
Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 32/166 (19%)
Query: 118 RIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
R++V GGAG++GSH V L+ D V+++D+ + R ++
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 177 ILLEV----------------DQIYHLACPASPV-H---YKY------NPVKTIKTNVMG 210
+ ++ P V H + +P+K NV+G
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVG 123
Query: 211 TLNMLGLAKRVGAK-FLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 255
L +L + +S++ ++G+ P + N PI
Sbjct: 124 ILRLLQAMLLHKCDKIIFSSSAAIFGN----PTMGSVSTNAEPIDI 165
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 2e-12
Identities = 36/152 (23%), Positives = 63/152 (41%), Gaps = 24/152 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVI--VIDNFFTGRKDNLVHHFRNP---RFELIRHD 172
V GG GFV S LV L+ +G V V D + + H ++ R D
Sbjct: 11 TACVVGGTGFVASLLVKLLLQKGYAVNTTVRD---PDNQKKVSHLLELQELGDLKIFRAD 67
Query: 173 VVEP-----ILLEVDQIYHLACPASPVHYKY-NPVK-TIKTNVMGTLNMLGLAKRVGA-- 223
+ + + D ++H+ A+PVH+ +P IK + G +N++ R +
Sbjct: 68 LTDELSFEAPIAGCDFVFHV---ATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVK 124
Query: 224 KFLLT-STSEVYGDPLEHPQK---ETYWGNVN 251
+ +LT S + V + L+ E W ++
Sbjct: 125 RVILTSSAAAVTINQLDGTGLVVDEKNWTDIE 156
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 2e-12
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 18/119 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
+IV+ G +GFVGS L+++ ++RG EV + + + N ++ + DV
Sbjct: 6 KIVLIGASGFVGSALLNEALNRGFEVTAV----VRHPEKI--KIENEHLKVKKADVSSLD 59
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTST 230
V + D + P N + L ++ K+ G FL+
Sbjct: 60 EVCEVCKGADAVISAFNPGW------NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGG 112
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 3e-11
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 23/136 (16%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVI-------DNFFT--GRKDNLVHHFRNPRFEL 168
R+ VTG GF G L L G V + F D + +
Sbjct: 11 RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGD----- 65
Query: 169 IRH-DVVEPILLEV--DQIYHLACPASP-VHYKY-NPVKTIKTNVMGTLNMLGLAKRVGA 223
IR + + + E + ++H+A A P V Y PV+T TNVMGT+ +L + VG
Sbjct: 66 IRDQNKLLESIREFQPEIVFHMA--AQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGG 123
Query: 224 K--FLLTSTSEVYGDP 237
+ ++ + Y +
Sbjct: 124 VKAVVNITSDKCYDNK 139
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 4e-11
Identities = 34/152 (22%), Positives = 53/152 (34%), Gaps = 24/152 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD----NLVHHFRN-----PRFEL 168
R+ VTGG GF+GS ++ L++ G V T R D V N +
Sbjct: 3 RVCVTGGTGFLGSWIIKSLLENGYSVNT-----TIRADPERKRDVSFLTNLPGASEKLHF 57
Query: 169 IRHDVVEPILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA 223
D+ P I+H A P K V G L +L
Sbjct: 58 FNADLSNPDSFAAAIEGCVGIFHTASP-IDFAVSEPEEIVTKRTVDGALGILKACVNSKT 116
Query: 224 --KFLLTST--SEVYGDPLEHPQKETYWGNVN 251
+F+ TS+ + + + E+ W +V+
Sbjct: 117 VKRFIYTSSGSAVSFNGKDKDVLDESDWSDVD 148
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 335 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 7e-11
Identities = 30/140 (21%), Positives = 56/140 (40%), Gaps = 20/140 (14%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVI----DNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
VTG G G++L L+++G V + + R + D+ +
Sbjct: 19 VTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLR---ELGIEGDIQYEDGDMADA 75
Query: 177 -----ILLEV--DQIYHLACPA-SPVHYKY-NPVKTIKTNVMGTLNMLGLAKRVG--AKF 225
+++ ++Y+LA A S V + PV T + +G ++L ++ +F
Sbjct: 76 CSVQRAVIKAQPQEVYNLA--AQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRF 133
Query: 226 LLTSTSEVYGDPLEHPQKET 245
STSE++G Q E
Sbjct: 134 YQASTSEMFGLIQAERQDEN 153
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 9e-11
Identities = 32/151 (21%), Positives = 60/151 (39%), Gaps = 23/151 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVI--VIDNFFTGRKDNLVHHFRNP----RFELIRH 171
+ VTG +GF+GS LV +L++RG V V D + H P L +
Sbjct: 7 TVCVTGASGFIGSWLVMRLLERGYTVRATVRD---PTNVKKVKHLLDLPKAETHLTLWKA 63
Query: 172 DVVEP-----ILLEVDQIYHLACPASPVHYKY-NPVK-TIKTNVMGTLNMLGLAKRVGA- 223
D+ + + ++H+ A+P+ ++ +P IK + G L ++
Sbjct: 64 DLADEGSFDEAIKGCTGVFHV---ATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTV 120
Query: 224 -KFLLT-STSEVYGDPLE-HPQKETYWGNVN 251
+ + T S V + E+ W ++
Sbjct: 121 RRLVFTSSAGTVNIQEHQLPVYDESCWSDME 151
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 2e-10
Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 16/127 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+I + G G GS ++++ +RG EV I RN H + +
Sbjct: 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIV--------------RNAGKITQTHKDINIL 47
Query: 178 LLEV--DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
++ + L+ V + +V +++ + + LL
Sbjct: 48 QKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASL 107
Query: 236 DPLEHPQ 242
E
Sbjct: 108 QIDEDGN 114
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 59.0 bits (142), Expect = 2e-10
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 11/133 (8%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP---- 176
+ G G +G+ L + L + R+ + ++ D+ +P
Sbjct: 6 IVGVTGIIGNSLAEILPLADTPGGPWKVYGVARR-TRPAWHEDNPINYVQCDISDPDDSQ 64
Query: 177 -ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK---FLLTSTSE 232
L + + H+ + + N N+L L + +
Sbjct: 65 AKLSPLTDVTHVFYVTWANR--STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRK 122
Query: 233 VYGDPLEHPQKET 245
Y P E K
Sbjct: 123 HYMGPFESYGKIE 135
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 Length = 375 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 3e-10
Identities = 55/176 (31%), Positives = 77/176 (43%), Gaps = 29/176 (16%)
Query: 92 SFQFHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID---- 147
S H S G + G R ++TG G GS+L + L+++G EV I
Sbjct: 3 SSHHHHHHSSGREN---KYFQGHMRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS 59
Query: 148 NFFTGRKDNL---VHHFRNPRFELIRHDVVEP-----ILLEV--DQIYHLACPA-SPVHY 196
+F TGR ++L +L D+ + I+ EV +IY+L A S V
Sbjct: 60 SFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLG--AQSHVKI 117
Query: 197 KY-NPVKTIKTNVMGTLNML------GLAKRVGAKFLLTSTSEVYGDPLEHPQKET 245
+ T + +GTL +L GL V KF STSE+YG E PQKET
Sbjct: 118 SFDLAEYTADVDGVGTLRLLDAVKTCGLINSV--KFYQASTSELYGKVQEIPQKET 171
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 Length = 372 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 8e-10
Identities = 54/146 (36%), Positives = 76/146 (52%), Gaps = 25/146 (17%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVID----NFFTGRKDNLVH--HFRNPRFELIRHDVV 174
+TG G GS+L + L+++G EV I +F T R D++ H NP+F L D+
Sbjct: 6 ITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLS 65
Query: 175 EP-----ILLEV--DQIYHLACPA-SPVHYKY-NPVKTIKTNVMGTLNML------GLAK 219
+ IL EV D++Y+L A S V + +P T + MGTL +L GL K
Sbjct: 66 DTSNLTRILREVQPDEVYNLG--AMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEK 123
Query: 220 RVGAKFLLTSTSEVYGDPLEHPQKET 245
+ +F STSE+YG E PQKET
Sbjct: 124 KT--RFYQASTSELYGLVQEIPQKET 147
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* Length = 345 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-09
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 20/140 (14%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVID----NFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
+TG G G++L L+++G EV D F + R ++I D++E
Sbjct: 8 ITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLK---ELGIENDVKIIHMDLLEF 64
Query: 177 -----ILLEV--DQIYHLACPA-SPVHYKY-NPVKTIKTNVMGTLNMLGLAKRVG--AKF 225
+ +V D++Y+LA A S V + P+ T + + +G L +L + V KF
Sbjct: 65 SNIIRTIEKVQPDEVYNLA--AQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKF 122
Query: 226 LLTSTSEVYGDPLEHPQKET 245
STSE++G E PQ E
Sbjct: 123 YQASTSEMFGKVQEIPQTEK 142
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-09
Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
R++V G G V +L+ +L ++G E + ++ +++ ++ E
Sbjct: 23 RVLVVGANGKVARYLLSELKNKGHEPVA----MVRNEEQGPELRERGASDIVVANLEEDF 78
Query: 178 ---LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEV 233
+D + A + P KTI ++ G + + A++ G K F++ S+
Sbjct: 79 SHAFASIDAVVFAAG-SGP---HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGT 134
Query: 234 YGDPLEHP 241
DP + P
Sbjct: 135 -VDPDQGP 141
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* Length = 344 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-09
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 25/129 (19%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGR----KDNLVHHFRNPRFELIRH 171
I++TGG G G V K++D + ++IV R + + F +PR
Sbjct: 23 TILITGGTGSFGKCFVRKVLDTTNAKKIIVYS-----RDELKQSEMAMEFNDPRMRFFIG 77
Query: 172 DV-----VEPILLEVDQIYHLAC----PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG 222
DV + L VD H A P + +YNP++ IKTN+MG N++ +
Sbjct: 78 DVRDLERLNYALEGVDICIHAAALKHVPIA----EYNPLECIKTNIMGASNVINACLKNA 133
Query: 223 -AKFLLTST 230
++ + ST
Sbjct: 134 ISQVIALST 142
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 4e-09
Identities = 35/158 (22%), Positives = 57/158 (36%), Gaps = 35/158 (22%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVI-----------------DNFFTGRKDNLVH- 159
+++TG GF+G +LV +L+ R D + F +G + L H
Sbjct: 75 TVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHF 134
Query: 160 -HFRNPRFELIRHDVVEP-----------ILLEVDQIYHLACPASPVHYKYNPVKTIKTN 207
R E++ D EP + VD I A+ V+ + + N
Sbjct: 135 KELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDS---AAMVNA-FPYHELFGPN 190
Query: 208 VMGTLNMLGLAKRVGAK-FLLTSTSEVYGDPLEHPQKE 244
V GT ++ +A K F ST++V E
Sbjct: 191 VAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTE 228
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 2e-08
Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 16/129 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHD---VV 174
+I V G G GS +V + RG EV+ + R + + +
Sbjct: 2 KIAVLGATGRAGSAIVAEARRRGHEVLAV-----VRDPQKAADRLGATVATLVKEPLVLT 56
Query: 175 EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEV 233
E L VD + Y ++ +++ L + + ++ +
Sbjct: 57 EADLDSVDAVVDALSVPWGSGRGY-------LHLDFATHLVSLLRNSDTLAVFILGSASL 109
Query: 234 YGDPLEHPQ 242
+HP
Sbjct: 110 AMPGADHPM 118
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* Length = 381 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 3e-08
Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 25/171 (14%)
Query: 97 RTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID----NFFTG 152
R+ S + + R ++TG G GS+L + L+ +G EV + NF T
Sbjct: 9 RSDSESITAPKADSTVVEPRKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQ 68
Query: 153 RKDNL---VHHFRNPRFELIRHDVVEP-----ILLEV--DQIYHLACPA-SPVHYKY-NP 200
R +++ H+ +L D+ + + + D++Y+LA A S V + P
Sbjct: 69 RINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPDEVYNLA--AQSHVAVSFEIP 126
Query: 201 VKTIKTNVMGTLNML------GLAKRVGAKFLLTSTSEVYGDPLEHPQKET 245
T G L +L + K+ +SE++G PQ ET
Sbjct: 127 DYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGS-TPPPQSET 176
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 5e-08
Identities = 22/130 (16%), Positives = 44/130 (33%), Gaps = 18/130 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
+I + G G G + + + G EV V+ R + + ++ DV
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVL-----VRDSSRLPSEGPRPAHVVVGDVLQAA 59
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTS 231
V+ + D + L N + G N++ K G + +++
Sbjct: 60 DVDKTVAGQDAVIVLLGTR-------NDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA 112
Query: 232 EVYGDPLEHP 241
+ DP + P
Sbjct: 113 FLLWDPTKVP 122
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 9e-08
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 9/73 (12%)
Query: 74 PPQELHPFHALTANQQRQSFQFHRTSSFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLV 133
P L A Q + +F R L + +TG G VG L
Sbjct: 114 PASTLTGMFAYRQTQLIEDLKFLS---------RTSTLFDGSPLTVAITGSRGLVGRALT 164
Query: 134 DKLIDRGDEVIVI 146
+L G EVI +
Sbjct: 165 AQLQTGGHEVIQL 177
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 18/118 (15%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELI----RHDV 173
+I + G G VG L+ L ++ RK V + N + +
Sbjct: 2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAG-----ARKVEQVPQYNNVKAVHFDVDWTPEE 56
Query: 174 VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTST 230
+ L +D I +++ +K ++ G + ++ A++ K F+L ST
Sbjct: 57 MAKQLHGMDAIINVSGSG--------GKSLLKVDLYGAVKLMQAAEKAEVKRFILLST 106
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 39/140 (27%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF--------ELI 169
++VTG +G G + KL + D+ + LV R+ + ++
Sbjct: 6 TVLVTGASGRTGQIVYKKLKEGSDKFVAKG---------LV---RSAQGKEKIGGEADVF 53
Query: 170 RHDVVEPILLE-----VDQIYHLA-------------CPASPVHYKYNPVKTIKTNVMGT 211
D+ + + +D + L P + + + +G
Sbjct: 54 IGDITDADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQ 113
Query: 212 LNMLGLAKRVGAK-FLLTST 230
N + AK G K ++ +
Sbjct: 114 KNQIDAAKVAGVKHIVVVGS 133
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 6e-06
Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 12/121 (9%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHHFRNPRFELIRHDVVEP 176
+I++ G G +G L +L +G EV R + + ++ R D +
Sbjct: 5 KILIAG-CGDLGLELARRLTAQGHEVTG-----LRRSAQPMPAGVQTLIADVTRPDTLAS 58
Query: 177 ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYG 235
I+ +I AS +Y+ + V G N L + + S++ VYG
Sbjct: 59 IVHLRPEILVYCVAAS----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYG 114
Query: 236 D 236
Sbjct: 115 Q 115
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-05
Identities = 21/121 (17%), Positives = 38/121 (31%), Gaps = 16/121 (13%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV-- 173
+ + G +G G L+ +++++G +V +I GR+ D
Sbjct: 20 SVFILGASGETGRVLLKEILEQGLFSKVTLI-----GRRKLTFDEEAYKNVNQEVVDFEK 74
Query: 174 ---VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTS 229
D + K ++ + L LAK G K F L S
Sbjct: 75 LDDYASAFQGHDVGFCCLG---TTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLS 131
Query: 230 T 230
+
Sbjct: 132 S 132
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 6e-05
Identities = 18/96 (18%), Positives = 26/96 (27%), Gaps = 23/96 (23%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176
I V G AG +G + L + V V D + + D +
Sbjct: 7 NICVVG-AGKIGQMIAALLKTSSNYSVTVAD-----HDLAALAVLNRMGVATKQVDAKDE 60
Query: 177 -----ILLEVD-----QIYHL------ACPASPVHY 196
L D + L A A+ HY
Sbjct: 61 AGLAKALGGFDAVISAAPFFLTPIIAKAAKAAGAHY 96
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 1e-04
Identities = 19/149 (12%), Positives = 40/149 (26%), Gaps = 28/149 (18%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVE 175
I + G AG + L L+ D I + + + + + R +I
Sbjct: 7 YITILGAAGQIAQXLTATLLTYTDMHITL---YGRQLKTRIPPEIIDHERVTVIEGSFQN 63
Query: 176 PILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230
P LE + ++ + +++ R + ++ +
Sbjct: 64 PGXLEQAVTNAEVVFV----------------GAMESGSDMASIVKALSRXNIRRVIGVS 107
Query: 231 SEVYGDPLEHPQKETYWGNVNPIGELLAA 259
G E P W N +
Sbjct: 108 M--AGLSGEFPVALEKWTFDNLPISYVQG 134
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE 175
R+++ G G G HL+D+++ +VI RK H PR + + E
Sbjct: 7 RVLLAGATGLTGEHLLDRILSEPTLAKVIAP-----ARKALAEH----PRLDNPVGPLAE 57
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 4e-04
Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG----RKDNLVHHFRNPRFELIRHDV 173
RI++ G G++G H+ +D G ++ T K L+ F+ ++ +
Sbjct: 6 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65
Query: 174 VEP 176
+
Sbjct: 66 DDH 68
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 263 | |||
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 99.91 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 99.89 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.88 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 99.88 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 99.88 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 99.88 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 99.87 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 99.87 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 99.87 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 99.86 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 99.86 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 99.86 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 99.86 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 99.86 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 99.86 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 99.86 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 99.86 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 99.86 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 99.85 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 99.85 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 99.85 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 99.85 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 99.85 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 99.85 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 99.85 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 99.84 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 99.84 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 99.84 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 99.84 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 99.84 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 99.84 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 99.84 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 99.84 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 99.84 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 99.83 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 99.83 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 99.83 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 99.83 | |
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 99.83 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 99.83 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.83 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 99.83 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 99.82 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 99.82 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 99.82 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 99.81 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 99.81 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 99.81 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 99.81 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 99.81 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 99.81 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 99.8 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.8 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.8 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 99.8 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.8 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.8 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.79 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.79 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 99.79 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 99.79 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 99.79 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.79 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 99.79 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.79 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.78 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.78 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.78 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 99.78 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 99.78 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.78 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 99.78 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.78 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.78 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.78 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.78 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.78 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.78 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.77 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.77 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.77 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.77 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.77 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.77 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.77 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.77 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.77 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.77 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.77 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.77 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.77 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.77 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.77 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.77 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 99.77 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.77 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.77 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.77 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.77 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.77 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.76 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.76 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.76 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.76 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.76 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.76 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.76 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.76 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.76 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.76 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.76 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.76 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.76 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 99.76 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.76 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.76 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.76 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.76 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.76 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.76 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.76 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.76 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.76 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.76 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.76 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.76 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.76 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.76 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.76 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.76 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.76 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.76 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.76 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.76 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.76 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.76 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.76 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.76 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.76 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.76 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.75 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.75 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.75 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.75 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.75 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.75 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.75 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.75 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.75 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.75 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.75 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.75 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.75 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 99.75 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.75 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.75 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.75 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.75 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.75 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.75 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.75 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.75 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.75 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.75 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.75 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.74 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.74 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.74 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.74 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.74 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.74 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.74 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.74 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.74 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.74 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.74 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.74 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.74 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.74 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.74 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.74 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.74 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.74 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.74 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.74 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.74 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.74 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.74 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.74 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.74 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.74 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.74 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.73 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.73 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.73 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.73 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.73 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.73 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.73 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.73 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.73 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.73 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.73 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.73 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.73 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.73 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.73 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.73 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.73 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.73 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.73 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.73 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 99.73 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.73 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.73 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 99.73 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.73 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.73 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.73 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.73 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 99.73 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.73 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.73 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.72 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.72 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.72 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.72 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.72 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.72 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.72 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 99.72 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.72 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.72 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.72 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.72 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.72 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.72 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.72 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.72 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.72 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.71 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.71 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.71 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.71 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.71 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.71 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.71 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.71 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.71 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.71 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.71 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.7 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.7 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.7 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.7 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.7 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.7 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.7 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.7 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.7 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.7 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.69 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.69 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.69 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.69 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.69 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.68 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.68 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.68 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.68 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.67 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.67 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.67 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.67 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.66 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.66 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.66 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.65 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.64 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 99.63 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.63 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.62 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.61 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.59 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.56 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.56 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.56 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.55 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.55 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 99.55 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.54 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.54 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.53 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.53 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 99.53 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.51 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.5 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.49 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.48 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.48 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.46 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.43 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.4 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.4 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.4 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.39 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.39 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.37 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.34 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.34 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.33 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.32 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.31 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.2 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.05 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.93 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 98.91 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.88 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.87 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.86 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.78 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.52 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.51 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.44 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 98.42 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.39 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.34 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.31 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.25 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 98.19 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.15 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.09 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 98.06 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.99 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.92 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.92 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.9 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.89 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.88 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.87 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.87 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.86 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.82 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.81 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.81 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.8 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.8 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.74 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.73 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 97.72 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.72 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.72 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.68 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.68 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 97.65 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 97.63 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 97.63 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.61 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.6 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.58 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.56 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 97.56 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.56 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.55 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.53 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.53 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.53 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.53 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.52 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.51 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.51 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.51 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.51 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.5 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.49 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.48 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 97.47 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 97.47 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.47 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 97.41 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.41 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.36 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.34 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.33 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.33 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.32 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 97.3 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 97.26 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 97.26 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 97.25 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 97.24 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.23 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.21 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.19 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 97.19 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.18 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.17 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 97.17 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 97.16 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.16 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.15 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.12 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.11 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.1 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.09 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 97.09 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 97.09 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.09 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.08 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 97.08 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 97.07 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 97.07 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 97.06 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.0 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.97 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 96.96 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.96 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 96.94 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.91 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.88 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.86 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 96.86 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.86 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.86 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.86 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.83 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.82 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.81 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 96.81 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.79 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 96.79 | |
| 2yv3_A | 331 | Aspartate-semialdehyde dehydrogenase; aspartate pa | 96.75 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 96.75 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 96.71 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 96.7 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.64 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.61 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 96.59 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.59 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 96.58 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 96.57 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.57 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 96.56 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 96.55 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.53 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.48 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 96.47 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 96.47 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.42 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.42 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.41 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 96.41 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 96.38 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 96.37 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.36 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 96.34 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.33 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.32 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.3 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 96.3 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.3 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 96.26 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 96.26 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 96.24 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 96.2 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 96.2 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 96.2 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.19 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 96.19 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 96.19 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 96.19 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 96.18 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.15 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 96.12 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 96.12 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.12 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 96.08 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.04 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 96.02 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.02 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.02 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 96.01 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 96.01 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 95.96 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 95.95 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.95 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 95.95 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.91 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 95.89 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.86 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 95.84 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 95.81 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.81 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 95.79 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.79 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 95.79 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 95.77 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 95.74 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 95.71 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 95.7 |
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-24 Score=190.96 Aligned_cols=150 Identities=67% Similarity=1.077 Sum_probs=126.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASP 193 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~ 193 (263)
+++|+|+||||+||||++|+++|+++|++|++++|......+.+.......+++++.+|+.++.+.++|+||||||....
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~d~vih~A~~~~~ 104 (343)
T 2b69_A 25 KDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASP 104 (343)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCSH
T ss_pred cCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChhhcCCCEEEECccccCc
Confidence 56789999999999999999999999999999998755443333333345678999999999999999999999986543
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.....++...+++|+.|+.+++++|++.+++||++||.++||.....+++|++|...+|..+.+.|+.+|
T Consensus 105 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK 174 (343)
T 2b69_A 105 PNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGK 174 (343)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHH
T ss_pred hhhhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHHH
Confidence 3345678889999999999999999988889999999999998877889999887777888888999886
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-23 Score=186.18 Aligned_cols=145 Identities=32% Similarity=0.407 Sum_probs=121.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCC------CceEEEEcccccc-----ccCCCc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRN------PRFELIRHDVVEP-----ILLEVD 182 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~------~~v~~~~~Dv~~~-----~~~~iD 182 (263)
+++|+|+||||+||||++|+++|+++|++|++++|......+........ .++.++.+|+.|. .+.++|
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 102 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVD 102 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCS
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCC
Confidence 56789999999999999999999999999999999876554444333211 6789999999876 456899
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccc
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATA 261 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~ 261 (263)
+|||+||.........++...+++|+.|+.+++++|++.+. +||++||.++||.....+++|++ |..+.+.|+.
T Consensus 103 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~-----~~~p~~~Y~~ 177 (351)
T 3ruf_A 103 HVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEEN-----IGNPLSPYAV 177 (351)
T ss_dssp EEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTC-----CCCCCSHHHH
T ss_pred EEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccCC-----CCCCCChhHH
Confidence 99999986544334457788999999999999999999987 99999999999988888999994 6677888988
Q ss_pred cC
Q 024766 262 VV 263 (263)
Q Consensus 262 sK 263 (263)
+|
T Consensus 178 sK 179 (351)
T 3ruf_A 178 TK 179 (351)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-22 Score=175.20 Aligned_cols=132 Identities=19% Similarity=0.244 Sum_probs=112.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag 189 (263)
++|+|+||||+||||++++++|+++|++|++++|+..+.. ...+.++.+|++|. .+.++|+||||||
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag 73 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA--------GPNEECVQCDLADANAVNAMVAGCDGIVHLGG 73 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC--------CTTEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc--------CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCC
Confidence 4679999999999999999999999999999998755432 45789999999886 4568999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecC-CCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGD-PLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~-~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.. ...++++.+++|+.|+.++++++++.+. +||++||.++||. +...+++|+ .|..+.+.|+.||
T Consensus 74 ~~----~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~-----~~~~~~~~Y~~sK 140 (267)
T 3rft_A 74 IS----VEKPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPD-----VPARPDGLYGVSK 140 (267)
T ss_dssp CC----SCCCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTT-----SCCCCCSHHHHHH
T ss_pred Cc----CcCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCC-----CCCCCCChHHHHH
Confidence 63 3467889999999999999999999886 9999999999974 455677777 4777889999987
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.3e-22 Score=175.57 Aligned_cols=137 Identities=38% Similarity=0.589 Sum_probs=115.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCC---CcEEEEccCCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE---VDQIYHLACPASP 193 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~---iD~Vi~~Ag~~~~ 193 (263)
|+|+||||+||||++|+++|+++|++|++++|......+.. ...+.++.+|+.|..+.+ -|+||||||....
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~d~vih~A~~~~~ 75 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV-----NPSAELHVRDLKDYSWGAGIKGDVVFHFAANPEV 75 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS-----CTTSEEECCCTTSTTTTTTCCCSEEEECCSSCSS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc-----CCCceEEECccccHHHHhhcCCCEEEECCCCCCc
Confidence 58999999999999999999999999999998765543322 456788999998864221 2999999986554
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.....++...+++|+.|+.++++++++.+. +||++||.++||.....+++|+ .|..+.+.|+.||
T Consensus 76 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~p~~~Y~~sK 141 (312)
T 3ko8_A 76 RLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEE-----EPYKPISVYGAAK 141 (312)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHH
T ss_pred hhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCC-----CCCCCCChHHHHH
Confidence 455678899999999999999999998886 9999999999998888889998 4777888999887
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-22 Score=179.49 Aligned_cols=142 Identities=27% Similarity=0.365 Sum_probs=116.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHh--CCCeEEEEecCCccc------h---hhhhhhcCCCceEEEEcccccc-----
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLID--RGDEVIVIDNFFTGR------K---DNLVHHFRNPRFELIRHDVVEP----- 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~--~G~~V~~l~r~~~~~------~---~~~~~~~~~~~v~~~~~Dv~~~----- 176 (263)
.+++|+|+||||+||||++|+++|++ +|++|++++|..... . .... ......+.++.+|+++.
T Consensus 7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~Dl~d~~~~~~ 85 (362)
T 3sxp_A 7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFK-NLIGFKGEVIAADINNPLDLRR 85 (362)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGG-GGTTCCSEEEECCTTCHHHHHH
T ss_pred hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhh-hccccCceEEECCCCCHHHHHH
Confidence 45788999999999999999999999 999999999865411 0 1111 11345678999999886
Q ss_pred c-cCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCc
Q 024766 177 I-LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE 255 (263)
Q Consensus 177 ~-~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~ 255 (263)
. ..++|+||||||.... ...+++..+++|+.|+.+++++|++.+.+||++||.++||.... +++|++ |..+
T Consensus 86 ~~~~~~D~vih~A~~~~~--~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~V~~SS~~vyg~~~~-~~~E~~-----~~~p 157 (362)
T 3sxp_A 86 LEKLHFDYLFHQAAVSDT--TMLNQELVMKTNYQAFLNLLEIARSKKAKVIYASSAGVYGNTKA-PNVVGK-----NESP 157 (362)
T ss_dssp HTTSCCSEEEECCCCCGG--GCCCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGGCSCCS-SBCTTS-----CCCC
T ss_pred hhccCCCEEEECCccCCc--cccCHHHHHHHHHHHHHHHHHHHHHcCCcEEEeCcHHHhCCCCC-CCCCCC-----CCCC
Confidence 2 5689999999985432 45678999999999999999999998888999999999997766 888984 7778
Q ss_pred CccccccC
Q 024766 256 LLAATAVV 263 (263)
Q Consensus 256 ~~~Y~~sK 263 (263)
.+.|+.||
T Consensus 158 ~~~Y~~sK 165 (362)
T 3sxp_A 158 ENVYGFSK 165 (362)
T ss_dssp SSHHHHHH
T ss_pred CChhHHHH
Confidence 88999887
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-22 Score=181.27 Aligned_cols=144 Identities=22% Similarity=0.400 Sum_probs=118.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc-----cC--CCcEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI-----LL--EVDQIY 185 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~-----~~--~iD~Vi 185 (263)
++|+|+||||+||||++++++|+++|++|++++|+.....+...... ....+.++.+|++|.. +. ++|+||
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 83 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI 83 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence 46799999999999999999999999999999998665544333221 2457889999998862 23 799999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
||||.........++.+.+++|+.|+.++++++++.+. +||++||.++||.....+++|++ |..+.+.|+.||
T Consensus 84 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~-----~~~~~~~Y~~sK 157 (341)
T 3enk_A 84 HFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETF-----PLSATNPYGQTK 157 (341)
T ss_dssp ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTTS-----CCBCSSHHHHHH
T ss_pred ECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCCC-----CCCCCChhHHHH
Confidence 99987554444556788999999999999999999886 99999999999988888999984 667888999887
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-22 Score=179.76 Aligned_cols=146 Identities=26% Similarity=0.402 Sum_probs=110.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCc-cchhhhhhhcCCCceEEEEccccccc-----cC--CCc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFT-GRKDNLVHHFRNPRFELIRHDVVEPI-----LL--EVD 182 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~~--~iD 182 (263)
..++|+|+||||+||||++|+++|+++| ++|++++|... ...+.+.......++.++.+|+.|.. +. ++|
T Consensus 21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 100 (346)
T 4egb_A 21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQ 100 (346)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCC
T ss_pred ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCC
Confidence 3567899999999999999999999999 67778777642 22333333334568999999998863 33 399
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCC-CCCCcCCCCCCCCCCCCcCcccc
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDP-LEHPQKETYWGNVNPIGELLAAT 260 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~-~~~~~~E~~~~~~~p~~~~~~Y~ 260 (263)
+|||+||.........++...+++|+.|+.+++++|++.+. +||++||.++||.. ...+++|+ .|..+.+.|+
T Consensus 101 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~-----~~~~p~~~Y~ 175 (346)
T 4egb_A 101 VIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEE-----TPLAPNSPYS 175 (346)
T ss_dssp EEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTT-----SCCCCCSHHH
T ss_pred EEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCC-----CCCCCCChhH
Confidence 99999987655445567788999999999999999999987 89999999999976 46688888 4777888999
Q ss_pred ccC
Q 024766 261 AVV 263 (263)
Q Consensus 261 ~sK 263 (263)
.+|
T Consensus 176 ~sK 178 (346)
T 4egb_A 176 SSK 178 (346)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-22 Score=179.50 Aligned_cols=138 Identities=26% Similarity=0.287 Sum_probs=109.0
Q ss_pred CCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCc
Q 024766 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVD 182 (263)
Q Consensus 108 ~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD 182 (263)
.+.....++|+|+||||+||||++|+++|+++|++|++++|.... ..+.++.+|+.|. .+.++|
T Consensus 11 ~~~~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----------~~~~~~~~Dl~d~~~~~~~~~~~d 79 (347)
T 4id9_A 11 SSGLVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-----------TGGEEVVGSLEDGQALSDAIMGVS 79 (347)
T ss_dssp ----------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-----------SCCSEEESCTTCHHHHHHHHTTCS
T ss_pred CCcccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-----------CCccEEecCcCCHHHHHHHHhCCC
Confidence 344556788999999999999999999999999999999987543 3567888999875 456899
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecC--CCCCCcCCCCCCCCCCCCcCccc
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGD--PLEHPQKETYWGNVNPIGELLAA 259 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~--~~~~~~~E~~~~~~~p~~~~~~Y 259 (263)
+|||+|+...... ...+..+++|+.|+.+++++|++.+. +||++||.++||. ....+++|+ .|..+.+.|
T Consensus 80 ~vih~A~~~~~~~--~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~-----~~~~~~~~Y 152 (347)
T 4id9_A 80 AVLHLGAFMSWAP--ADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTED-----HPLCPNSPY 152 (347)
T ss_dssp EEEECCCCCCSSG--GGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTT-----SCCCCCSHH
T ss_pred EEEECCcccCcch--hhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCC-----CCCCCCChH
Confidence 9999998654322 23488899999999999999999887 9999999999997 567788888 467788889
Q ss_pred cccC
Q 024766 260 TAVV 263 (263)
Q Consensus 260 ~~sK 263 (263)
+.+|
T Consensus 153 ~~sK 156 (347)
T 4id9_A 153 GLTK 156 (347)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=173.37 Aligned_cols=137 Identities=34% Similarity=0.530 Sum_probs=110.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc----ccCCCcEEEEccCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP----ILLEVDQIYHLACPA 191 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~----~~~~iD~Vi~~Ag~~ 191 (263)
||+|+||||+||||++|+++|+++| .+++++++.....+.. ...+.++.+|+.+. .+.++|+|||+|+..
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~d~vih~a~~~ 74 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEEFV-----NEAARLVKADLAADDIKDYLKGAEEVWHIAANP 74 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGGGS-----CTTEEEECCCTTTSCCHHHHTTCSEEEECCCCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChhhc-----CCCcEEEECcCChHHHHHHhcCCCEEEECCCCC
Confidence 4689999999999999999999999 6666665544332221 34688899999874 235799999999865
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.......+++..+++|+.|+.++++++++.+. +||++||.++||.....+++|+ .|..+.+.|+.||
T Consensus 75 ~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK 142 (313)
T 3ehe_A 75 DVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPED-----YPTHPISLYGASK 142 (313)
T ss_dssp CCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTT-----SCCCCCSHHHHHH
T ss_pred ChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCC-----CCCCCCCHHHHHH
Confidence 44445678899999999999999999998886 9999999999998888889998 4777888899886
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-22 Score=177.72 Aligned_cols=144 Identities=26% Similarity=0.293 Sum_probs=114.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchh-hhhhhcCCCceEEEEccccccc-----cC--CCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD-NLVHHFRNPRFELIRHDVVEPI-----LL--EVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~-~~~~~~~~~~v~~~~~Dv~~~~-----~~--~iD~Vi~ 186 (263)
++|+|+||||+||||++++++|+++|++|++++|+...... .+.......++.++.+|+.|.. +. ++|+|||
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 81 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYN 81 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence 46899999999999999999999999999999997654322 2222212346888999998762 22 4799999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~--~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
|||.........+++..+++|+.|+.++++++++.+ .+||++||.++||.....+++|+ .|..+.+.|+.||
T Consensus 82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~-----~~~~~~~~Y~~sK 155 (345)
T 2z1m_A 82 LAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEK-----TPFYPRSPYAVAK 155 (345)
T ss_dssp CCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHH
T ss_pred CCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCcc-----CCCCCCChhHHHH
Confidence 998654322356788999999999999999998877 49999999999998877788888 4666778899886
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.6e-22 Score=178.79 Aligned_cols=145 Identities=29% Similarity=0.378 Sum_probs=116.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhh---hcC---CCceEEEEcccccc-----ccCCCc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH---HFR---NPRFELIRHDVVEP-----ILLEVD 182 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~---~~~---~~~v~~~~~Dv~~~-----~~~~iD 182 (263)
+++|+|+||||+||||++++++|+++|++|++++|+.....+.+.. .+. ..++.++.+|+.|. .+.++|
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d 104 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD 104 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCC
Confidence 5678999999999999999999999999999999976533222221 111 25788999999875 346899
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccc
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATA 261 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~ 261 (263)
+||||||.........+++..+++|+.|+.+++++|++.+. +||++||.++|+.....+++|++ |..+.+.|+.
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~~-----~~~~~~~Y~~ 179 (352)
T 1sb8_A 105 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDT-----IGKPLSPYAV 179 (352)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTC-----CCCCCSHHHH
T ss_pred EEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCCC-----CCCCCChhHH
Confidence 99999986432223356788999999999999999999886 99999999999987777888884 5567788988
Q ss_pred cC
Q 024766 262 VV 263 (263)
Q Consensus 262 sK 263 (263)
+|
T Consensus 180 sK 181 (352)
T 1sb8_A 180 TK 181 (352)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-22 Score=176.41 Aligned_cols=142 Identities=29% Similarity=0.390 Sum_probs=111.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhC--CCeEEEEecCCcc-chhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~--G~~V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~ 187 (263)
+|+|+||||+||||++++++|+++ |++|++++|.... ..+.+... ...++.++.+|++|. .+.++|+||||
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 82 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI-LGDRVELVVGDIADAELVDKLAAKADAIVHY 82 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG-CSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhh-ccCCeEEEECCCCCHHHHHHHhhcCCEEEEC
Confidence 579999999999999999999999 8999999986532 22222222 346789999999875 35678999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCC------------CCcCCCCCCCCCCCCc
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLE------------HPQKETYWGNVNPIGE 255 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~------------~~~~E~~~~~~~p~~~ 255 (263)
||.........+++..+++|+.|+.+++++|.+.+.+||++||.++||.... .+++|+ +|..+
T Consensus 83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~-----~~~~~ 157 (348)
T 1oc2_A 83 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAE-----TNYNP 157 (348)
T ss_dssp CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTT-----SCCCC
T ss_pred CcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCCeEEEecccceeCCCcccccccccccccCCCcCCC-----CCCCC
Confidence 9865422223467788999999999999999988779999999999986532 567777 46667
Q ss_pred CccccccC
Q 024766 256 LLAATAVV 263 (263)
Q Consensus 256 ~~~Y~~sK 263 (263)
.+.|+.||
T Consensus 158 ~~~Y~~sK 165 (348)
T 1oc2_A 158 SSPYSSTK 165 (348)
T ss_dssp CSHHHHHH
T ss_pred CCccHHHH
Confidence 78899886
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.8e-22 Score=175.16 Aligned_cols=138 Identities=26% Similarity=0.420 Sum_probs=112.1
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccC--CCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~--~iD~Vi~~A 188 (263)
||+|+||||+||||++++++|+++|++|++++|......+.+ . .+++++.+|+.+. .+. ++|+|||+|
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~-~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a 75 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAI----T-EGAKFYNGDLRDKAFLRDVFTQENIEAVMHFA 75 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGS----C-TTSEEEECCTTCHHHHHHHHHHSCEEEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhc----C-CCcEEEECCCCCHHHHHHHHhhcCCCEEEECC
Confidence 478999999999999999999999999999998754433211 1 2678899999875 234 799999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
|.........+++..+++|+.|+.+++++|++.+. +||++||.++||.....+++|++ |..+.+.|+.+|
T Consensus 76 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~~-----~~~~~~~Y~~sK 146 (330)
T 2c20_A 76 ADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEET-----MTNPTNTYGETK 146 (330)
T ss_dssp CCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTTS-----CCCCSSHHHHHH
T ss_pred cccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcCC-----CCCCCChHHHHH
Confidence 86433223346788999999999999999999886 99999999999987778899984 566778898876
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=175.30 Aligned_cols=143 Identities=29% Similarity=0.458 Sum_probs=112.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCc-cchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFT-GRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~ 187 (263)
+|+|+||||+||||++++++|+++| ++|++++|... ...+.+.......++.++.+|+.|. .+.++|+||||
T Consensus 3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~ 82 (336)
T 2hun_A 3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL 82 (336)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence 4689999999999999999999997 89999998642 2222232222345789999999876 33579999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~--~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
||.........+++..+++|+.|+.++++++.+.+ .+||++||.++||.....+++|++ |..+.+.|+.||
T Consensus 83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~-----~~~~~~~Y~~sK 155 (336)
T 2hun_A 83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTEND-----RLMPSSPYSATK 155 (336)
T ss_dssp CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTB-----CCCCCSHHHHHH
T ss_pred CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCC-----CCCCCCccHHHH
Confidence 98643222234678889999999999999998876 399999999999977667888884 666778899886
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=8.7e-22 Score=176.76 Aligned_cols=143 Identities=27% Similarity=0.426 Sum_probs=112.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc------chhhhhhhc--CCCceEEEEccccccc-----cC--C
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG------RKDNLVHHF--RNPRFELIRHDVVEPI-----LL--E 180 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~------~~~~~~~~~--~~~~v~~~~~Dv~~~~-----~~--~ 180 (263)
+|+|+||||+||||++++++|+++|++|++++|.... ..+...... ...++.++.+|+.+.. +. +
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 81 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS 81 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcC
Confidence 5799999999999999999999999999999986443 222222111 1346788999998752 33 7
Q ss_pred CcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCc-Ccc
Q 024766 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE-LLA 258 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~-~~~ 258 (263)
+|+||||||.........++.+.+++|+.|+.++++++++.+. +||++||.++||.....+++|++ |..+ .+.
T Consensus 82 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~~-----~~~p~~~~ 156 (348)
T 1ek6_A 82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH-----PTGGCTNP 156 (348)
T ss_dssp EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTS-----CCCCCSSH
T ss_pred CCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCCC-----CCCCCCCc
Confidence 9999999986543223456788999999999999999998886 99999999999987778899984 4445 678
Q ss_pred ccccC
Q 024766 259 ATAVV 263 (263)
Q Consensus 259 Y~~sK 263 (263)
|+.||
T Consensus 157 Y~~sK 161 (348)
T 1ek6_A 157 YGKSK 161 (348)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 98876
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-22 Score=178.22 Aligned_cols=139 Identities=32% Similarity=0.504 Sum_probs=110.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc---cchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT---GRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~---~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
+++|+|+||||+||||++|+++|+++|++|++++|... ...+.+........++++.+|+. ++|+|||+||.
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-----~~d~vi~~a~~ 79 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS-----DVRLVYHLASH 79 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT-----TEEEEEECCCC
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc-----cCCEEEECCcc
Confidence 45789999999999999999999999999999999766 23333333223445666666665 89999999987
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
........++...++ |+.|+.+++++|++.++ +||++||.++||.....+++|+ +|..+.+.|+.+|
T Consensus 80 ~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~-----~~~~p~~~Y~~sK 147 (321)
T 3vps_A 80 KSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPED-----SPLSPRSPYAASK 147 (321)
T ss_dssp CCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHH
T ss_pred CChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCC-----CCCCCCChhHHHH
Confidence 654333445566677 99999999999999986 9999999999998888899998 4677888998876
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=172.48 Aligned_cols=130 Identities=24% Similarity=0.317 Sum_probs=109.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~ 190 (263)
+|+|+||||+||||++|+++|+++|++|++++|+.. ..+ + ..++++.+|+. . .+.++|+|||+||.
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~-~~~-~------~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIG-NKA-I------NDYEYRVSDYT-LEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-------------CCEEEECCCC-HHHHHHHTTTCSEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCC-ccc-C------CceEEEEcccc-HHHHHHhhcCCCEEEEcccc
Confidence 579999999999999999999999999999999722 222 1 16788899987 4 45689999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.... ++...+++|+.|+.+++++|++.+. +||++||.++||.....+++|++ |..+.+.|+.+|
T Consensus 73 ~~~~----~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~~-----~~~p~~~Y~~sK 137 (311)
T 3m2p_A 73 RGSQ----GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEKE-----LPLPDLMYGVSK 137 (311)
T ss_dssp CCSS----SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTTS-----CCCCSSHHHHHH
T ss_pred CCCC----ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCC-----CCCCCchhHHHH
Confidence 5433 5667789999999999999999987 79999999999988888999984 777888998876
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.9e-22 Score=179.77 Aligned_cols=147 Identities=21% Similarity=0.335 Sum_probs=117.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccchhhhhhhcCCCceEEEEcccc-cc-----ccCCCcEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV-EP-----ILLEVDQIY 185 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~-~~-----~~~~iD~Vi 185 (263)
.+++|+|+||||+||||++|+++|+++ |++|++++|+....... ....+++++.+|+. +. .+.++|+||
T Consensus 21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~----~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vi 96 (372)
T 3slg_A 21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL----VKHERMHFFEGDITINKEWVEYHVKKCDVIL 96 (372)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGG----GGSTTEEEEECCTTTCHHHHHHHHHHCSEEE
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhh----ccCCCeEEEeCccCCCHHHHHHHhccCCEEE
Confidence 356789999999999999999999998 99999999976543322 23468999999998 65 345799999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCC-CCCCC-CcCccccccC
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWG-NVNPI-GELLAATAVV 263 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~-~~~p~-~~~~~Y~~sK 263 (263)
||||.........++.+.+++|+.|+.+++++|++.+.+||++||.++||.....++.|+++. ...|. .+.+.|+.+|
T Consensus 97 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~sK 176 (372)
T 3slg_A 97 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSK 176 (372)
T ss_dssp ECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHTCEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHHHHHH
T ss_pred EcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCcHHHHH
Confidence 999876544445678889999999999999999988889999999999998888888888642 12232 4667898876
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-21 Score=172.87 Aligned_cols=143 Identities=26% Similarity=0.413 Sum_probs=110.6
Q ss_pred CCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccC--C
Q 024766 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--E 180 (263)
Q Consensus 108 ~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~--~ 180 (263)
......+++|+|+||||+||||++++++|+++|++|++++|+.....+.... ..++.++.+|+.|. .+. +
T Consensus 12 ~~~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~---l~~v~~~~~Dl~d~~~~~~~~~~~~ 88 (330)
T 2pzm_A 12 SGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPP---VAGLSVIEGSVTDAGLLERAFDSFK 88 (330)
T ss_dssp --CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCS---CTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred cCCcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhc---cCCceEEEeeCCCHHHHHHHHhhcC
Confidence 3445567889999999999999999999999999999999965443321111 14788999999875 344 8
Q ss_pred CcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCC--CcCCCCCCCCCCCCcCc
Q 024766 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEH--PQKETYWGNVNPIGELL 257 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~--~~~E~~~~~~~p~~~~~ 257 (263)
+|+||||||..... ..++++ +++|+.|+.++++++.+.+. +||++||.++|+..... +++|++ .+.+
T Consensus 89 ~D~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~-------~~~~ 158 (330)
T 2pzm_A 89 PTHVVHSAAAYKDP-DDWAED--AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPT-------APFT 158 (330)
T ss_dssp CSEEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCC-------CCCS
T ss_pred CCEEEECCccCCCc-cccChh--HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCC-------CCCC
Confidence 99999999865432 223344 89999999999999998886 99999999999866544 777873 4567
Q ss_pred cccccC
Q 024766 258 AATAVV 263 (263)
Q Consensus 258 ~Y~~sK 263 (263)
.|+.||
T Consensus 159 ~Y~~sK 164 (330)
T 2pzm_A 159 SYGISK 164 (330)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 888876
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-21 Score=172.88 Aligned_cols=142 Identities=32% Similarity=0.463 Sum_probs=112.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhC---C---CeEEEEecCCcc-chhhhhhhcCCCceEEEEcccccc-----ccCCCcEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDR---G---DEVIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQI 184 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~---G---~~V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~V 184 (263)
|+|+||||+||||++++++|+++ | ++|++++|.... ..+.+.......++.++.+|+.|. .+.++|+|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 80 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence 47999999999999999999997 8 899999986432 222222222345789999999875 34679999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
|||||.........+++..+++|+.|+.++++++++.+. +||++||.++||.....+++|+ .|..+.+.|+.||
T Consensus 81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~~~~~Y~~sK 155 (337)
T 1r6d_A 81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASK 155 (337)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHHHHHH
T ss_pred EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCC-----CCCCCCCchHHHH
Confidence 999986442222346778899999999999999999886 9999999999997766788888 4666788899886
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-21 Score=173.17 Aligned_cols=137 Identities=28% Similarity=0.344 Sum_probs=110.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----cC--CCcEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----LL--EVDQIY 185 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~~--~iD~Vi 185 (263)
..+.++|+||||+||||++++++|+++|++|++++|+... .. + .+.++.+|+.|.. +. ++|+||
T Consensus 9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~-----l---~~~~~~~Dl~d~~~~~~~~~~~~~d~vi 79 (321)
T 2pk3_A 9 HHGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL-----P---NVEMISLDIMDSQRVKKVISDIKPDYIF 79 (321)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC-----T---TEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred ccCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc-----c---eeeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence 3466899999999999999999999999999999987654 11 1 6888999998762 22 389999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcCcceecCC--CCCCcCCCCCCCCCCCCcCccccc
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSEVYGDP--LEHPQKETYWGNVNPIGELLAATA 261 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~-~iV~vSS~~vyg~~--~~~~~~E~~~~~~~p~~~~~~Y~~ 261 (263)
||||.........+++..+++|+.|+.+++++|++. +. +||++||.++||.. ...+++|++ |..+.+.|+.
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~-----~~~~~~~Y~~ 154 (321)
T 2pk3_A 80 HLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEEN-----QLRPMSPYGV 154 (321)
T ss_dssp ECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTS-----CCBCCSHHHH
T ss_pred EcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCC-----CCCCCCccHH
Confidence 999865433334578899999999999999999775 34 99999999999976 667888884 6667888998
Q ss_pred cC
Q 024766 262 VV 263 (263)
Q Consensus 262 sK 263 (263)
||
T Consensus 155 sK 156 (321)
T 2pk3_A 155 SK 156 (321)
T ss_dssp HH
T ss_pred HH
Confidence 86
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-21 Score=173.19 Aligned_cols=144 Identities=19% Similarity=0.196 Sum_probs=113.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchh-hhhhhcCCCceEEEEccccccc-----cC--CCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD-NLVHHFRNPRFELIRHDVVEPI-----LL--EVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~-~~~~~~~~~~v~~~~~Dv~~~~-----~~--~iD~Vi~ 186 (263)
.+++|+||||+||||++++++|+++|++|++++|+...... .+........+.++.+|+.|.. +. ++|+|||
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vih 92 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN 92 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 56799999999999999999999999999999997654221 1111112356889999998762 22 4799999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~--~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
|||.........++...+++|+.|+.++++++++.+ .+||++||.++||.....+++|++ |..+.+.|+.||
T Consensus 93 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~-----~~~p~~~Y~~sK 166 (335)
T 1rpn_A 93 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENT-----PFYPRSPYGVAK 166 (335)
T ss_dssp CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTS-----CCCCCSHHHHHH
T ss_pred CccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCccc-----CCCCCChhHHHH
Confidence 998654322356788999999999999999999886 499999999999987777888884 666778898876
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-21 Score=175.99 Aligned_cols=145 Identities=20% Similarity=0.200 Sum_probs=112.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----cC--CCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----LL--EVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~~--~iD~Vi~ 186 (263)
+++|+|+||||+||||++|+++|+++|++|++++|+...............++.++.+|+.+.. +. ++|+|||
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 86 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH 86 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEE
Confidence 4678999999999999999999999999999999976554332222112457889999998762 23 3899999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEcCcceecCCCC-CCcCCCCCCCCCCCCcCccccccC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPLE-HPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-~iV~vSS~~vyg~~~~-~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
|||.........++...+++|+.|+.+++++|++.+ . +||++||.++||.... .++.|+ +|..+.+.|+.||
T Consensus 87 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~-----~~~~~~~~Y~~sK 161 (357)
T 1rkx_A 87 MAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPYSNSK 161 (357)
T ss_dssp CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHHHHHH
T ss_pred CCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCC-----CCCCCCCccHHHH
Confidence 998533222345678899999999999999998876 4 9999999999996543 467777 3666778898876
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-21 Score=174.75 Aligned_cols=148 Identities=27% Similarity=0.405 Sum_probs=109.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc-chhhhhhhcCCCceEEEEcccccc-----ccCC--CcEEEEc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEP-----ILLE--VDQIYHL 187 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~--iD~Vi~~ 187 (263)
||+|+||||+||||++++++|+++|++|++++|.... ..+.........++.++.+|+.|. .+.+ +|+||||
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL 80 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEEC
Confidence 4689999999999999999999999999999985422 222222222234688999999875 2344 9999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcCcceecCCCCCCcCCCC-----------CCCCCCCC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEHPQKETY-----------WGNVNPIG 254 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS~~vyg~~~~~~~~E~~-----------~~~~~p~~ 254 (263)
||.........+++..+++|+.|+.+++++|++.+. +||++||.++||.....++.|++ .....|..
T Consensus 81 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~ 160 (347)
T 1orr_A 81 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLD 160 (347)
T ss_dssp CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCC
T ss_pred CcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCCCC
Confidence 986432222346788999999999999999998774 79999999999976555543331 11124666
Q ss_pred cCccccccC
Q 024766 255 ELLAATAVV 263 (263)
Q Consensus 255 ~~~~Y~~sK 263 (263)
+.+.|+.||
T Consensus 161 ~~~~Y~~sK 169 (347)
T 1orr_A 161 FHSPYGCSK 169 (347)
T ss_dssp CCHHHHHHH
T ss_pred CCCchHHHH
Confidence 788999886
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-21 Score=176.29 Aligned_cols=146 Identities=23% Similarity=0.315 Sum_probs=106.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYH 186 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~ 186 (263)
.+++|+|+||||+||||++++++|+++| ++|++++|......+.+. ....++++.+|+.|. .+.++|+|||
T Consensus 29 ~~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~---~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih 105 (377)
T 2q1s_A 29 KLANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP---DHPAVRFSETSITDDALLASLQDEYDYVFH 105 (377)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC---CCTTEEEECSCTTCHHHHHHCCSCCSEEEE
T ss_pred HhCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc---CCCceEEEECCCCCHHHHHHHhhCCCEEEE
Confidence 3678899999999999999999999999 999999987554332221 245788999999875 4568999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcCcceecCCCCCCcC--CCCCCCCCCC-CcCccccc
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSEVYGDPLEHPQK--ETYWGNVNPI-GELLAATA 261 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~-~iV~vSS~~vyg~~~~~~~~--E~~~~~~~p~-~~~~~Y~~ 261 (263)
|||.........+++..+++|+.|+.+++++|++. +. +||++||.++||...+.+++ |++|. .|. .+.+.|+.
T Consensus 106 ~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~--~~~~~~~~~Y~~ 183 (377)
T 2q1s_A 106 LATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDI--VSLHNNDSPYSM 183 (377)
T ss_dssp CCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCC--CCSSCCCSHHHH
T ss_pred CCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCccccccc--ccccCCCCchHH
Confidence 99864432223467889999999999999999988 76 99999999999987766788 88542 144 66778988
Q ss_pred cC
Q 024766 262 VV 263 (263)
Q Consensus 262 sK 263 (263)
+|
T Consensus 184 sK 185 (377)
T 2q1s_A 184 SK 185 (377)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.5e-21 Score=171.30 Aligned_cols=142 Identities=25% Similarity=0.383 Sum_probs=106.0
Q ss_pred CCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----cCC--
Q 024766 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----LLE-- 180 (263)
Q Consensus 108 ~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~~~-- 180 (263)
.++...++||+|+||||+||||++++++|+++|++|++++|+.....+.+.. ..++.++.+|+.|.. +.+
T Consensus 13 ~~~~~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~---~~~~~~~~~Dl~d~~~~~~~~~~~~ 89 (333)
T 2q1w_A 13 GLVPRGSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKD---HPNLTFVEGSIADHALVNQLIGDLQ 89 (333)
T ss_dssp --------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCC---CTTEEEEECCTTCHHHHHHHHHHHC
T ss_pred ceeeecCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhh---cCCceEEEEeCCCHHHHHHHHhccC
Confidence 3445567889999999999999999999999999999999975543322221 147889999998762 334
Q ss_pred CcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceec----CCCCCCcCCCCCCCCCCCCc
Q 024766 181 VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYG----DPLEHPQKETYWGNVNPIGE 255 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg----~~~~~~~~E~~~~~~~p~~~ 255 (263)
+|+||||||..... ...+++ +++|+.|+.++++++.+.+. +||++||.++|| .... +++|++ .+
T Consensus 90 ~D~vih~A~~~~~~-~~~~~~--~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~-~~~E~~-------~p 158 (333)
T 2q1w_A 90 PDAVVHTAASYKDP-DDWYND--TLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPV-RLDHPR-------NP 158 (333)
T ss_dssp CSEEEECCCCCSCT-TCHHHH--HHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSB-CTTSCC-------CC
T ss_pred CcEEEECceecCCC-ccCChH--HHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCC-CcCCCC-------CC
Confidence 99999999875432 222333 89999999999999999886 999999999998 5554 788874 34
Q ss_pred C-ccccccC
Q 024766 256 L-LAATAVV 263 (263)
Q Consensus 256 ~-~~Y~~sK 263 (263)
. +.|+.+|
T Consensus 159 ~~~~Y~~sK 167 (333)
T 2q1w_A 159 ANSSYAISK 167 (333)
T ss_dssp TTCHHHHHH
T ss_pred CCCchHHHH
Confidence 4 6788776
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=6.7e-21 Score=172.47 Aligned_cols=143 Identities=30% Similarity=0.384 Sum_probs=109.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch-hhhhhhc-----CCCceEEEEccccccc-----cC--CCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHF-----RNPRFELIRHDVVEPI-----LL--EVD 182 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~-~~~~~~~-----~~~~v~~~~~Dv~~~~-----~~--~iD 182 (263)
||+|+||||+||||++++++|+++|++|++++|+..... +.+.... ...++.++.+|+.|.. +. ++|
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 80 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD 80 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence 579999999999999999999999999999998754321 1111111 1346888899998762 22 479
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC----CeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCcc
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG----AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLA 258 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~----~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~ 258 (263)
+||||||........+++...+++|+.|+.++++++++.+ .+||++||.++||.....+++|++ |..+.+.
T Consensus 81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~-----~~~~~~~ 155 (372)
T 1db3_A 81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETT-----PFYPRSP 155 (372)
T ss_dssp EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTS-----CCCCCSH
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccC-----CCCCCCh
Confidence 9999999765444556788899999999999999999887 499999999999987777888884 6667788
Q ss_pred ccccC
Q 024766 259 ATAVV 263 (263)
Q Consensus 259 Y~~sK 263 (263)
|+.||
T Consensus 156 Y~~sK 160 (372)
T 1db3_A 156 YAVAK 160 (372)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99886
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-21 Score=172.58 Aligned_cols=140 Identities=23% Similarity=0.330 Sum_probs=112.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCC-------CeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----c-C
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRG-------DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----L-L 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G-------~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~-~ 179 (263)
.+++|+|+||||+||||++++++|+++| ++|++++|......+ ....++.++.+|+.|.. + .
T Consensus 11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~~~ 85 (342)
T 2hrz_A 11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-----GFSGAVDARAADLSAPGEAEKLVEA 85 (342)
T ss_dssp CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-----TCCSEEEEEECCTTSTTHHHHHHHT
T ss_pred CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-----ccCCceeEEEcCCCCHHHHHHHHhc
Confidence 4678899999999999999999999999 899999987543321 12456888999998762 3 4
Q ss_pred CCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-----C-eEEEEcCcceecCCCCCCcCCCCCCCCCCC
Q 024766 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-----A-KFLLTSTSEVYGDPLEHPQKETYWGNVNPI 253 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-----~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~ 253 (263)
++|+||||||.... ....++...+++|+.|+.++++++++.+ . +||++||.++||.....+++|++ |.
T Consensus 86 ~~d~vih~A~~~~~-~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~-----~~ 159 (342)
T 2hrz_A 86 RPDVIFHLAAIVSG-EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEF-----HT 159 (342)
T ss_dssp CCSEEEECCCCCHH-HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTTC-----CC
T ss_pred CCCEEEECCccCcc-cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCCC-----CC
Confidence 79999999986431 1234678889999999999999998765 4 99999999999976567888884 66
Q ss_pred CcCccccccC
Q 024766 254 GELLAATAVV 263 (263)
Q Consensus 254 ~~~~~Y~~sK 263 (263)
.+.+.|+.||
T Consensus 160 ~~~~~Y~~sK 169 (342)
T 2hrz_A 160 TPLTSYGTQK 169 (342)
T ss_dssp CCSSHHHHHH
T ss_pred CCcchHHHHH
Confidence 6778899886
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-20 Score=168.70 Aligned_cols=147 Identities=24% Similarity=0.302 Sum_probs=111.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEE-Ecccccc-----ccCCCcE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELI-RHDVVEP-----ILLEVDQ 183 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~-~~Dv~~~-----~~~~iD~ 183 (263)
..++|+|+||||+||||++++++|+++|++|++++|+...... +...+ ...++.++ .+|++|. .+.++|+
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~ 86 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLAN-LQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG 86 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHH-HHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCE
Confidence 4578899999999999999999999999999999986543221 11111 12568888 7999875 3447999
Q ss_pred EEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-cCC-eEEEEcCcceecCCC----CCCcCCCCCC---------
Q 024766 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR-VGA-KFLLTSTSEVYGDPL----EHPQKETYWG--------- 248 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~-~~~-~iV~vSS~~vyg~~~----~~~~~E~~~~--------- 248 (263)
||||||.... ..++.+.+++|+.|+.+++++|.+ .+. +||++||.++|+.+. +.+++|++|.
T Consensus 87 vih~A~~~~~---~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~ 163 (342)
T 1y1p_A 87 VAHIASVVSF---SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKT 163 (342)
T ss_dssp EEECCCCCSC---CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHH
T ss_pred EEEeCCCCCC---CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhcc
Confidence 9999986532 357888999999999999999985 454 999999999986432 2578888652
Q ss_pred --CCCCCCcCccccccC
Q 024766 249 --NVNPIGELLAATAVV 263 (263)
Q Consensus 249 --~~~p~~~~~~Y~~sK 263 (263)
...|..+.+.|+.||
T Consensus 164 ~~~~~~~~~~~~Y~~sK 180 (342)
T 1y1p_A 164 LPESDPQKSLWVYAASK 180 (342)
T ss_dssp SCTTSTTHHHHHHHHHH
T ss_pred ccccccccchHHHHHHH
Confidence 122456678899887
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-20 Score=168.02 Aligned_cols=135 Identities=11% Similarity=0.085 Sum_probs=101.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~ 190 (263)
+|+|+||||+||||++++++|+++|++|++++|+.....+ + ....++++.+|+.|. .+.++|+||||||.
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-l----~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~ 87 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQR-L----AYLEPECRVAEMLDHAGLERALRGLDGVIFSAGY 87 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGG-G----GGGCCEEEECCTTCHHHHHHHTTTCSEEEEC---
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhh-h----ccCCeEEEEecCCCHHHHHHHHcCCCEEEECCcc
Confidence 3589999999999999999999999999999997654322 1 123678899999875 45679999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCC--CCcCCCCCCCCCCCCc----CccccccC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLE--HPQKETYWGNVNPIGE----LLAATAVV 263 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~--~~~~E~~~~~~~p~~~----~~~Y~~sK 263 (263)
.. ....++++.+++|+.|+.+++++|++.+. +||++||.++|+.... .+ +|++ |..+ .+.|+.+|
T Consensus 88 ~~--~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~-~E~~-----~~~p~~~~~~~Y~~sK 159 (342)
T 2x4g_A 88 YP--SRPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPG-HEGL-----FYDSLPSGKSSYVLCK 159 (342)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCB-CTTC-----CCSSCCTTSCHHHHHH
T ss_pred Cc--CCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCC-CCCC-----CCCccccccChHHHHH
Confidence 43 22346778899999999999999999886 9999999999986544 44 7774 5556 77898876
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-21 Score=174.96 Aligned_cols=143 Identities=22% Similarity=0.374 Sum_probs=111.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHH-hCCCeEEEEecCCccc--------hhhhhh---hc-C---CCc---eEEEEcccccc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGR--------KDNLVH---HF-R---NPR---FELIRHDVVEP 176 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll-~~G~~V~~l~r~~~~~--------~~~~~~---~~-~---~~~---v~~~~~Dv~~~ 176 (263)
+|+|+||||+||||++++++|+ ++|++|++++|..... .+.+.. .+ . ... +.++.+|+.|.
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~ 81 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence 4689999999999999999999 9999999999875442 222211 11 1 124 88999999876
Q ss_pred c-----cC--C-CcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCC-------CC
Q 024766 177 I-----LL--E-VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPL-------EH 240 (263)
Q Consensus 177 ~-----~~--~-iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~-------~~ 240 (263)
. +. + +|+||||||.........+++..+++|+.|+.++++++++.+. +||++||.++||... ..
T Consensus 82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~ 161 (397)
T 1gy8_A 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE 161 (397)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCccccccccc
Confidence 2 23 4 9999999986543223356788999999999999999998886 999999999999765 57
Q ss_pred CcCCCCCCCCCCCCcCccccccC
Q 024766 241 PQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 241 ~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
+++|++ |..+.+.|+.||
T Consensus 162 ~~~E~~-----~~~p~~~Y~~sK 179 (397)
T 1gy8_A 162 PIDINA-----KKSPESPYGESK 179 (397)
T ss_dssp CBCTTS-----CCBCSSHHHHHH
T ss_pred CcCccC-----CCCCCCchHHHH
Confidence 888884 566778899886
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.4e-21 Score=170.59 Aligned_cols=142 Identities=26% Similarity=0.492 Sum_probs=109.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh--cCCCceEEEEccccccc-----cC--CCcEEEEc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEPI-----LL--EVDQIYHL 187 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~Dv~~~~-----~~--~iD~Vi~~ 187 (263)
|+|+||||+||||++++++|+++|++|++++|......+..... ....++.++.+|++++. +. ++|+||||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~ 80 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEEC
Confidence 47999999999999999999999999999987543322222111 11346788899998762 22 59999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCc-CccccccC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGE-LLAATAVV 263 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~-~~~Y~~sK 263 (263)
||.........++.+.+++|+.|+.++++++++.+. +||++||.++||.....+++|+. |..+ .+.|+.||
T Consensus 81 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~-----~~~~~~~~Y~~sK 153 (338)
T 1udb_A 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESF-----PTGTPQSPYGKSK 153 (338)
T ss_dssp CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTS-----CCCCCSSHHHHHH
T ss_pred CccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCccc-----CCCCCCChHHHHH
Confidence 986543223346778899999999999999988876 99999999999987777888884 4333 67898876
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.6e-21 Score=172.76 Aligned_cols=142 Identities=28% Similarity=0.298 Sum_probs=110.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch-hhhhhhc------CCCceEEEEccccccc-----cC--CCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHF------RNPRFELIRHDVVEPI-----LL--EVD 182 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~-~~~~~~~------~~~~v~~~~~Dv~~~~-----~~--~iD 182 (263)
|+|+||||+||||++++++|+++|++|++++|+..... +.+.... ....+.++.+|+.|.. +. ++|
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 104 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPT 104 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCCC
Confidence 79999999999999999999999999999999754321 1111111 2346888999998762 22 479
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC----CeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCcc
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG----AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLA 258 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~----~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~ 258 (263)
+||||||.........+++..+++|+.|+.++++++++.+ .+||++||.++|+.....+++|++ |..+.+.
T Consensus 105 ~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~-----~~~~~~~ 179 (375)
T 1t2a_A 105 EIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETT-----PFYPRSP 179 (375)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTS-----CCCCCSH
T ss_pred EEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccC-----CCCCCCh
Confidence 9999998644322235678889999999999999999887 499999999999987777888884 5667788
Q ss_pred ccccC
Q 024766 259 ATAVV 263 (263)
Q Consensus 259 Y~~sK 263 (263)
|+.||
T Consensus 180 Y~~sK 184 (375)
T 1t2a_A 180 YGAAK 184 (375)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 99886
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-21 Score=170.06 Aligned_cols=123 Identities=20% Similarity=0.192 Sum_probs=104.0
Q ss_pred CC-EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccC--CCcEEEEc
Q 024766 116 RL-RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHL 187 (263)
Q Consensus 116 ~k-~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~--~iD~Vi~~ 187 (263)
|| +|+||||+||||++++++|+++|++|++++|.. +|+.|. .+. ++|+|||+
T Consensus 4 M~m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~--------------------~D~~d~~~~~~~~~~~~~d~vi~~ 63 (287)
T 3sc6_A 4 MKERVIITGANGQLGKQLQEELNPEEYDIYPFDKKL--------------------LDITNISQVQQVVQEIRPHIIIHC 63 (287)
T ss_dssp -CEEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTT--------------------SCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred ceeEEEEECCCCHHHHHHHHHHHhCCCEEEEecccc--------------------cCCCCHHHHHHHHHhcCCCEEEEC
Confidence 44 899999999999999999999999999998831 344443 233 69999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
||.........++...+++|+.|+.+++++|++.+.+||++||.++||.....+++|++ |..+.+.|+.+|
T Consensus 64 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~vy~~~~~~~~~E~~-----~~~p~~~Y~~sK 134 (287)
T 3sc6_A 64 AAYTKVDQAEKERDLAYVINAIGARNVAVASQLVGAKLVYISTDYVFQGDRPEGYDEFH-----NPAPINIYGASK 134 (287)
T ss_dssp CCCCCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCCCCSSCBCTTS-----CCCCCSHHHHHH
T ss_pred CcccChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchhhhcCCCCCCCCCCCC-----CCCCCCHHHHHH
Confidence 98765444456889999999999999999999988899999999999988888999994 667888999876
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=171.26 Aligned_cols=142 Identities=23% Similarity=0.254 Sum_probs=112.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEcc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLA 188 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~A 188 (263)
.++|+|+||||+||||++++++|+++|++|++++|+....... ....++++.+|+.|. .+.++|+|||||
T Consensus 27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-----~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A 101 (379)
T 2c5a_A 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE-----DMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 101 (379)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG-----GGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhh-----ccCCceEEECCCCCHHHHHHHhCCCCEEEECc
Confidence 3678999999999999999999999999999999975543221 123678899999875 356899999999
Q ss_pred CCCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCC-----CCcCCCCCCCCCCCCcCccccc
Q 024766 189 CPASPVHY-KYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLE-----HPQKETYWGNVNPIGELLAATA 261 (263)
Q Consensus 189 g~~~~~~~-~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~-----~~~~E~~~~~~~p~~~~~~Y~~ 261 (263)
|......+ ..++++.+++|+.|+.++++++++.+. +||++||.++|+.... .+++|+++ .|..+.+.|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~---~~~~~~~~Y~~ 178 (379)
T 2c5a_A 102 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDA---WPAEPQDAFGL 178 (379)
T ss_dssp CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGG---SSBCCSSHHHH
T ss_pred eecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccC---CCCCCCChhHH
Confidence 86543222 567889999999999999999999886 9999999999986432 45677743 24556778988
Q ss_pred cC
Q 024766 262 VV 263 (263)
Q Consensus 262 sK 263 (263)
+|
T Consensus 179 sK 180 (379)
T 2c5a_A 179 EK 180 (379)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=167.35 Aligned_cols=146 Identities=23% Similarity=0.332 Sum_probs=101.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchh--hhhhhcCCCceEEEEcccccc-----ccCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD--NLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~--~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~A 188 (263)
+|+|+||||+||||++|+++|+++|++|+++.|+.+.... .+.......+++++.+|+.|. .+.++|+|||+|
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 88 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA 88 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence 6799999999999999999999999999998886543211 111111124688899999875 345799999999
Q ss_pred CCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHcC-C-eEEEEcCcc-eecCCC---CCCcCCCCCCCCCC---CCcC-c
Q 024766 189 CPASPVHYKYNP-VKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSE-VYGDPL---EHPQKETYWGNVNP---IGEL-L 257 (263)
Q Consensus 189 g~~~~~~~~~~~-~~~~~~Nv~gt~~ll~~a~~~~-~-~iV~vSS~~-vyg~~~---~~~~~E~~~~~~~p---~~~~-~ 257 (263)
+.... ...++ ++.+++|+.|+.+++++|++.+ + +||++||.+ +|+.+. ..+++|+.|.+.++ ..+. .
T Consensus 89 ~~~~~--~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~ 166 (338)
T 2rh8_A 89 TPVHF--ASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTW 166 (338)
T ss_dssp SCCCC-----------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCCC
T ss_pred CccCC--CCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCccc
Confidence 85421 12233 3478999999999999999885 5 999999976 554321 13788887654332 2222 2
Q ss_pred cccccC
Q 024766 258 AATAVV 263 (263)
Q Consensus 258 ~Y~~sK 263 (263)
.|+.||
T Consensus 167 ~Y~~sK 172 (338)
T 2rh8_A 167 GYPASK 172 (338)
T ss_dssp CCTTSC
T ss_pred hHHHHH
Confidence 699988
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-21 Score=169.72 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=83.1
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----cC--CCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----LL--EVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~~--~iD~Vi~~A 188 (263)
+|+|+||||+||||++++++|+++|++|++++|+... .. ++.+|+.+.. +. ++|+|||||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-----------~~--~~~~Dl~d~~~~~~~~~~~~~d~vih~A 68 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR-----------PK--FEQVNLLDSNAVHHIIHDFQPHVIVHCA 68 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------------------CHHHHHHHCCSEEEECC
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC-----------CC--eEEecCCCHHHHHHHHHhhCCCEEEECC
Confidence 5799999999999999999999999999999985432 01 5567776652 33 489999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
|.........+++..+++|+.|+.++++++++.+.+||++||.++|+. ...+++|++ |..+.+.|+.+|
T Consensus 69 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~~~-~~~~~~E~~-----~~~~~~~Y~~sK 137 (315)
T 2ydy_A 69 AERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDG-TNPPYREED-----IPAPLNLYGKTK 137 (315)
T ss_dssp -------------------CHHHHHHHHHHHHHTCEEEEEEEGGGSCS-SSCSBCTTS-----CCCCCSHHHHHH
T ss_pred cccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEchHHHcCC-CCCCCCCCC-----CCCCcCHHHHHH
Confidence 875443335567888999999999999999988889999999999997 566888884 556678898876
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-20 Score=167.72 Aligned_cols=143 Identities=22% Similarity=0.381 Sum_probs=112.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~~iD~Vi~~Ag 189 (263)
|+|+||||+||||++++++|+++ |++|++++|+...... .....+++++.+|+.+. .+.++|+||||||
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~ 76 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR----FLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGG----GTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHH----hhcCCCeEEEeccccCcHHHHHhhccCCCEEEEccc
Confidence 58999999999999999999998 8999999997554322 22345789999999873 2346999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCC-CCCC-CcCccccccC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGN-VNPI-GELLAATAVV 263 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~-~~p~-~~~~~Y~~sK 263 (263)
...+.....++...+++|+.|+.+++++|++.+.+||++||.++||.....+++|+++.. ..|. .+.+.|+.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK 152 (345)
T 2bll_A 77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSK 152 (345)
T ss_dssp CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHH
T ss_pred ccCccchhcCHHHHHHHHHHHHHHHHHHHHHhCCeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccHHHH
Confidence 654333345678899999999999999999888899999999999987777888886431 1232 4566898876
|
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.3e-21 Score=174.48 Aligned_cols=150 Identities=23% Similarity=0.262 Sum_probs=108.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch----------------hhhhhh--cCCCceEEEEcccc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK----------------DNLVHH--FRNPRFELIRHDVV 174 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~----------------~~~~~~--~~~~~v~~~~~Dv~ 174 (263)
..++++|+||||+||||++|+++|+++|++|++++|...... +.+... .....+.++.+|+.
T Consensus 8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~ 87 (404)
T 1i24_A 8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDIC 87 (404)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTT
T ss_pred ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCC
Confidence 457889999999999999999999999999999988533211 011110 12356889999998
Q ss_pred ccc-----cCC--CcEEEEccCCCCCCCCCCCHH---HHHHHHHHHHHHHHHHHHHcC--CeEEEEcCcceecCCCCCCc
Q 024766 175 EPI-----LLE--VDQIYHLACPASPVHYKYNPV---KTIKTNVMGTLNMLGLAKRVG--AKFLLTSTSEVYGDPLEHPQ 242 (263)
Q Consensus 175 ~~~-----~~~--iD~Vi~~Ag~~~~~~~~~~~~---~~~~~Nv~gt~~ll~~a~~~~--~~iV~vSS~~vyg~~~~~~~ 242 (263)
+.. +.+ +|+||||||.........+++ ..+++|+.|+.+++++|++.+ .+||++||.++||... .++
T Consensus 88 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~-~~~ 166 (404)
T 1i24_A 88 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDI 166 (404)
T ss_dssp SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCB
T ss_pred CHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCC-CCC
Confidence 763 334 999999998654322233443 478999999999999998877 3999999999999664 467
Q ss_pred CCCCCCCC---------CCCCcCccccccC
Q 024766 243 KETYWGNV---------NPIGELLAATAVV 263 (263)
Q Consensus 243 ~E~~~~~~---------~p~~~~~~Y~~sK 263 (263)
+|++|... .|..+.+.|+.||
T Consensus 167 ~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK 196 (404)
T 1i24_A 167 EEGYITITHNGRTDTLPYPKQASSFYHLSK 196 (404)
T ss_dssp CSSEEEEEETTEEEEEECCCCCCSHHHHHH
T ss_pred CccccccccccccccccCCCCCCChhHHHH
Confidence 77643211 3566778899886
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=7.9e-21 Score=168.25 Aligned_cols=137 Identities=34% Similarity=0.577 Sum_probs=108.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----cC--CCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----LL--EVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~~--~iD~Vi~~Ag 189 (263)
|+|+||||+||||++++++|+++|++|++++|......+.. ...+.++.+|++|+. +. ++|+|||+||
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~ 75 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENV-----PKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAA 75 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGGS-----CTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhhc-----ccCeEEEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence 47999999999999999999999999999988543322211 135678889998752 33 6999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCc-ceecC-CCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTS-EVYGD-PLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~-~vyg~-~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.........++...+++|+.|+.+++++|++.+. +||++||. ++||. ....+.+|++ |..+.+.|+.||
T Consensus 76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~~-----~~~~~~~Y~~sK 147 (311)
T 2p5y_A 76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETW-----PPRPKSPYAASK 147 (311)
T ss_dssp CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTTS-----CCCCCSHHHHHH
T ss_pred ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCCC-----CCCCCChHHHHH
Confidence 6433223356788999999999999999998886 99999998 99986 5556788884 556778899887
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.83 E-value=9.6e-21 Score=164.50 Aligned_cols=131 Identities=21% Similarity=0.249 Sum_probs=108.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~ 190 (263)
+|+|+||||+||||++++++|+++|++|++++|+..... ...+.++.+|+.|. .+.++|+||||||.
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 73 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA--------EAHEEIVACDLADAQAVHDLVKDCDGIIHLGGV 73 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC--------CTTEEECCCCTTCHHHHHHHHTTCSEEEECCSC
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc--------CCCccEEEccCCCHHHHHHHHcCCCEEEECCcC
Confidence 468999999999999999999999999999999754321 13568888999875 35679999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCC-CCCCcCCCCCCCCCCCCcCccccccC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDP-LEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~-~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
. ...+++..+++|+.|+.++++++++.+. +||++||.++|+.. ...+++|+ +|..+.+.|+.+|
T Consensus 74 ~----~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~-----~~~~~~~~Y~~sK 139 (267)
T 3ay3_A 74 S----VERPWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTE-----VPRRPDSLYGLSK 139 (267)
T ss_dssp C----SCCCHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTT-----SCCCCCSHHHHHH
T ss_pred C----CCCCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCC-----CCCCCCChHHHHH
Confidence 4 2356788999999999999999998886 99999999999863 45678888 4667778898876
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-20 Score=168.94 Aligned_cols=142 Identities=30% Similarity=0.476 Sum_probs=109.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCc-cchhhhhhhcCCCceEEEEcccccc-----ccC--CCcEEEEc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFT-GRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHL 187 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~--~iD~Vi~~ 187 (263)
|+|+||||+||||++++++|+++ |++|++++|... ...+.+.......++.++.+|+.|. .+. ++|+||||
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~ 80 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEC
Confidence 37999999999999999999998 799999998652 2222232222345789999999876 233 79999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--C-C-------eEEEEcCcceecCCCC--C--------CcCCCCC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV--G-A-------KFLLTSTSEVYGDPLE--H--------PQKETYW 247 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~--~-~-------~iV~vSS~~vyg~~~~--~--------~~~E~~~ 247 (263)
||.........+++..+++|+.|+.++++++.+. + . +||++||.++||.... . +++|+
T Consensus 81 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~-- 158 (361)
T 1kew_A 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTET-- 158 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTT--
T ss_pred CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCC--
Confidence 9865422223467889999999999999999876 5 2 9999999999986532 1 66777
Q ss_pred CCCCCCCcCccccccC
Q 024766 248 GNVNPIGELLAATAVV 263 (263)
Q Consensus 248 ~~~~p~~~~~~Y~~sK 263 (263)
+|..+.+.|+.||
T Consensus 159 ---~~~~~~~~Y~~sK 171 (361)
T 1kew_A 159 ---TAYAPSSPYSASK 171 (361)
T ss_dssp ---SCCCCCSHHHHHH
T ss_pred ---CCCCCCCccHHHH
Confidence 4667788999887
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-21 Score=167.38 Aligned_cols=123 Identities=21% Similarity=0.250 Sum_probs=101.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccC--CCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~--~iD~Vi~~A 188 (263)
.++|+||||+||||++++++|+++|++|++++|+ .+|+.|. .+. ++|+|||||
T Consensus 12 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~--------------------~~Dl~d~~~~~~~~~~~~~d~vih~A 71 (292)
T 1vl0_A 12 HMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ--------------------DLDITNVLAVNKFFNEKKPNVVINCA 71 (292)
T ss_dssp CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT--------------------TCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred cceEEEECCCChHHHHHHHHHHhCCCeEEeccCc--------------------cCCCCCHHHHHHHHHhcCCCEEEECC
Confidence 3589999999999999999999999999999875 1455443 233 699999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
|.........+++..+++|+.|+.++++++++.+.+||++||.++|+.....+++|++ |..+.+.|+.+|
T Consensus 72 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~iv~~SS~~v~~~~~~~~~~E~~-----~~~~~~~Y~~sK 141 (292)
T 1vl0_A 72 AHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEFD-----EVNPQSAYGKTK 141 (292)
T ss_dssp CCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTTS-----CCCCCSHHHHHH
T ss_pred ccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEEechHHeECCCCCCCCCCCC-----CCCCccHHHHHH
Confidence 8644322335788899999999999999999887799999999999987777889984 566778899876
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-20 Score=166.36 Aligned_cols=137 Identities=25% Similarity=0.336 Sum_probs=104.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccC-----CCc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL-----EVD 182 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~-----~iD 182 (263)
+++|+|+||||+||||++|+++|+++| ++|++++|....... ... . .+. +.+|+.+. .+. ++|
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~--~~~-~--~~~-~~~d~~~~~~~~~~~~~~~~~~~d 117 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKF--VNL-V--DLN-IADYMDKEDFLIQIMAGEEFGDVE 117 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGG--GGT-T--TSC-CSEEEEHHHHHHHHHTTCCCSSCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchh--hcc-c--Cce-EeeecCcHHHHHHHHhhcccCCCC
Confidence 456789999999999999999999999 899999987554211 111 1 111 44565543 333 599
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCcccccc
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAV 262 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~s 262 (263)
+||||||.... ...++++.+++|+.|+.++++++++.+.+||++||.++||.....+++|++ |..+.+.|+.+
T Consensus 118 ~Vih~A~~~~~--~~~~~~~~~~~n~~~~~~ll~a~~~~~~r~V~~SS~~v~g~~~~~~~~E~~-----~~~p~~~Y~~s 190 (357)
T 2x6t_A 118 AIFHEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESRE-----YEKPLNVFGYS 190 (357)
T ss_dssp EEEECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGCSCSSCCCSSGG-----GCCCSSHHHHH
T ss_pred EEEECCcccCC--ccCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcchHHhCCCCCCCcCCcC-----CCCCCChhHHH
Confidence 99999986543 345788999999999999999998877799999999999987777888884 66677889887
Q ss_pred C
Q 024766 263 V 263 (263)
Q Consensus 263 K 263 (263)
|
T Consensus 191 K 191 (357)
T 2x6t_A 191 K 191 (357)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.9e-21 Score=166.49 Aligned_cols=129 Identities=19% Similarity=0.202 Sum_probs=104.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----cCC-CcEEEEcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----LLE-VDQIYHLA 188 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~~~-iD~Vi~~A 188 (263)
++|+|+||| +||||++|+++|+++|++|++++|+.... ...++++.+|+.|.. +.+ +|+|||+|
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~---------~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a 71 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM---------PAGVQTLIADVTRPDTLASIVHLRPEILVYCV 71 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC---------CTTCCEEECCTTCGGGCTTGGGGCCSEEEECH
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc---------ccCCceEEccCCChHHHHHhhcCCCCEEEEeC
Confidence 357899999 59999999999999999999999975542 256778899998763 334 99999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
|.. ..+++..+++|+.|+.+++++|++.+. +||++||.++||...+.+++|+ +|..+.+.|+.+|
T Consensus 72 ~~~-----~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~sK 137 (286)
T 3gpi_A 72 AAS-----EYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDED-----TPPIAKDFSGKRM 137 (286)
T ss_dssp HHH-----HHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTT-----SCCCCCSHHHHHH
T ss_pred CCC-----CCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCC-----CCCCCCChhhHHH
Confidence 752 245677788999999999999998886 9999999999998888888999 4777888999886
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.8e-21 Score=166.42 Aligned_cols=125 Identities=21% Similarity=0.164 Sum_probs=103.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccC--CCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~--~iD~Vi~~Ag 189 (263)
|+|+||||+||||++++++|+ +|++|++++|+.. .+.+|+.|. .+. ++|+|||+||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~----------------~~~~D~~d~~~~~~~~~~~~~d~vih~a~ 63 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK----------------EFCGDFSNPKGVAETVRKLRPDVIVNAAA 63 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS----------------SSCCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc----------------cccccCCCHHHHHHHHHhcCCCEEEECcc
Confidence 479999999999999999999 8999999998641 234566554 233 3999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.........+++..+++|+.|+.+++++|++.+.+||++||.++||...+.+++|++ |..+.+.|+.+|
T Consensus 64 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~vy~~~~~~~~~E~~-----~~~p~~~Y~~sK 132 (299)
T 1n2s_A 64 HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETD-----ATSPLNVYGKTK 132 (299)
T ss_dssp CCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTTS-----CCCCSSHHHHHH
T ss_pred cCCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEecccEEeCCCCCCCCCCC-----CCCCccHHHHHH
Confidence 654333456788999999999999999999888899999999999987777888984 667778899876
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-20 Score=170.06 Aligned_cols=141 Identities=23% Similarity=0.266 Sum_probs=108.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch-hhhhhhcC-----CC-ceEEEEccccccc-----cC--CCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHFR-----NP-RFELIRHDVVEPI-----LL--EVD 182 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~-~~~~~~~~-----~~-~v~~~~~Dv~~~~-----~~--~iD 182 (263)
|+|+||||+||||++++++|+++|++|++++|+..... +.+..... .. .+.++.+|+.|.. +. ++|
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d 108 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 108 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence 79999999999999999999999999999999765411 11111111 12 6888999998762 22 479
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC------CeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcC
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG------AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGEL 256 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~------~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~ 256 (263)
+||||||.........+++..+++|+.|+.+++++|++.+ .+||++||.++||.... +++|++ |..+.
T Consensus 109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~-~~~E~~-----~~~~~ 182 (381)
T 1n7h_A 109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPP-PQSETT-----PFHPR 182 (381)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCS-SBCTTS-----CCCCC
T ss_pred EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCC-CCCCCC-----CCCCC
Confidence 9999998654322235678889999999999999998764 29999999999997766 888884 66677
Q ss_pred ccccccC
Q 024766 257 LAATAVV 263 (263)
Q Consensus 257 ~~Y~~sK 263 (263)
+.|+.+|
T Consensus 183 ~~Y~~sK 189 (381)
T 1n7h_A 183 SPYAASK 189 (381)
T ss_dssp SHHHHHH
T ss_pred CchHHHH
Confidence 8899886
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-20 Score=156.64 Aligned_cols=130 Identities=20% Similarity=0.203 Sum_probs=101.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~ 190 (263)
+|+|+||||+||||++++++|+++|++|++++|+.+..... ...++++.+|+.|. .+.++|+||||||.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIE------NEHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCC------CTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhc------cCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 57999999999999999999999999999999975543221 25789999999876 45689999999975
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.. +....+++|+.++.++++++++.+. +||++||.++|+...+.+ .|+ .|..+.+.|+.+|
T Consensus 78 ~~------~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~-~~~-----~~~~p~~~Y~~sK 139 (227)
T 3dhn_A 78 GW------NNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLR-LMD-----SGEVPENILPGVK 139 (227)
T ss_dssp ------------CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEE-GGG-----TTCSCGGGHHHHH
T ss_pred CC------CChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCc-ccc-----CCcchHHHHHHHH
Confidence 31 1223678999999999999999986 999999998776443332 333 3566778898876
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.3e-20 Score=163.10 Aligned_cols=147 Identities=21% Similarity=0.312 Sum_probs=103.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchh--hhhhhcC-CCceEEEEcccccc-----ccCCCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD--NLVHHFR-NPRFELIRHDVVEP-----ILLEVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~--~~~~~~~-~~~v~~~~~Dv~~~-----~~~~iD~Vi~ 186 (263)
++|+|+||||+||||++|+++|+++|++|+++.|+...... .+..... ..+++++.+|+.|. .+.++|+|||
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih 83 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFH 83 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEE
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence 57899999999999999999999999999999887543211 1111100 12578899999875 3457999999
Q ss_pred ccCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHcC-C-eEEEEcCcc-eecCC-CCCCcCCCCCCCCCC---C-CcCc
Q 024766 187 LACPASPVHYKYNP-VKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSE-VYGDP-LEHPQKETYWGNVNP---I-GELL 257 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~-~~~~~~Nv~gt~~ll~~a~~~~-~-~iV~vSS~~-vyg~~-~~~~~~E~~~~~~~p---~-~~~~ 257 (263)
+|+... ....++ ...+++|+.|+.+++++|++.+ . +||++||.+ +|+.. ...+++|+.|.+.+. . .+..
T Consensus 84 ~A~~~~--~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~ 161 (337)
T 2c29_D 84 VATPMD--FESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAW 161 (337)
T ss_dssp CCCCCC--SSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTTH
T ss_pred eccccC--CCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCccc
Confidence 998542 122344 3578999999999999998876 4 999999986 56543 234577875432111 1 1345
Q ss_pred cccccC
Q 024766 258 AATAVV 263 (263)
Q Consensus 258 ~Y~~sK 263 (263)
.|+.||
T Consensus 162 ~Y~~sK 167 (337)
T 2c29_D 162 MYFVSK 167 (337)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 688876
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.7e-20 Score=165.67 Aligned_cols=125 Identities=26% Similarity=0.365 Sum_probs=99.8
Q ss_pred CccccCCCCEEEEEcCCChHHHHHHHHHHhC-CC-eEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCC
Q 024766 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDR-GD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEV 181 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~-G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~i 181 (263)
+....+++|+|+||||+|+||++++++|+++ |+ +|++++|+..+..+ +...+....+.++.+|+.|. .+.++
T Consensus 14 ~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~-~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~ 92 (344)
T 2gn4_A 14 NHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSE-MAMEFNDPRMRFFIGDVRDLERLNYALEGV 92 (344)
T ss_dssp --CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHH-HHHHHCCTTEEEEECCTTCHHHHHHHTTTC
T ss_pred cHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHH-HHHHhcCCCEEEEECCCCCHHHHHHHHhcC
Confidence 3444578899999999999999999999999 98 99999987543322 22223456789999999886 45689
Q ss_pred cEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCccee
Q 024766 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vy 234 (263)
|+||||||.......+.++.+.+++|+.|+.+++++|.+.+. +||++||..++
T Consensus 93 D~Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~~~~ 146 (344)
T 2gn4_A 93 DICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTDKAA 146 (344)
T ss_dssp SEEEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGS
T ss_pred CEEEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCCccC
Confidence 999999987543333456788999999999999999999987 99999997654
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=159.65 Aligned_cols=132 Identities=27% Similarity=0.394 Sum_probs=103.9
Q ss_pred EEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccch-hhhhhhcCCCceEEEEcccccc-----ccC-----CCcEEE
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEP-----ILL-----EVDQIY 185 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~Dv~~~-----~~~-----~iD~Vi 185 (263)
+|+||||+||||++++++|+++| ++|++++|...... ..... +. +.+|+.+. .+. ++|+||
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~~~~------~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi 73 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD------LN-IADYMDKEDFLIQIMAGEEFGDVEAIF 73 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHT------SC-CSEEEEHHHHHHHHHTTCCCSSCCEEE
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchhhhcCc------ce-eccccccHHHHHHHHhccccCCCcEEE
Confidence 48999999999999999999999 89999998755431 11111 11 44555443 333 499999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
||||.... ...+++..+++|+.|+.++++++++.+.+||++||.++||.....+++|++ |..+.+.|+.+|
T Consensus 74 ~~a~~~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~v~g~~~~~~~~E~~-----~~~p~~~Y~~sK 144 (310)
T 1eq2_A 74 HEGACSST--TEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESRE-----YEKPLNVYGYSK 144 (310)
T ss_dssp ECCSCCCT--TCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSGG-----GCCCSSHHHHHH
T ss_pred ECcccccC--cccCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEeeHHHhCCCCCCCCCCCC-----CCCCCChhHHHH
Confidence 99986543 456788999999999999999999887799999999999987767888884 566778898876
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-20 Score=163.43 Aligned_cols=135 Identities=19% Similarity=0.226 Sum_probs=107.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhC--CCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccC--CCcEEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYH 186 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~--G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~--~iD~Vi~ 186 (263)
+|+|+||||+||||++++++|+++ |++|++++|+..... .. ..+.++.+|+.|. .+. ++|+|||
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~--~~-----~~~~~~~~D~~d~~~~~~~~~~~~~d~vih 74 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD--VV-----NSGPFEVVNALDFNQIEHLVEVHKITDIYL 74 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH--HH-----HSSCEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc--cc-----CCCceEEecCCCHHHHHHHHhhcCCCEEEE
Confidence 468999999999999999999999 899999998755421 11 1356788999875 233 7999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCC-CCCcCCCCCCCCCCCCcCccccccC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPL-EHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~-~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
|||.... ....+++..+++|+.|+.++++++++.+. +||++||.++||... ..+.+|+ .|..+.+.|+.+|
T Consensus 75 ~a~~~~~-~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~-----~~~~~~~~Y~~sK 147 (312)
T 2yy7_A 75 MAALLSA-TAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQY-----TIMEPSTVYGISK 147 (312)
T ss_dssp CCCCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSS-----CBCCCCSHHHHHH
T ss_pred CCccCCC-chhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCcccc-----CcCCCCchhHHHH
Confidence 9986432 12356788999999999999999999887 999999999999643 3466777 4666778898876
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=160.50 Aligned_cols=145 Identities=14% Similarity=0.047 Sum_probs=111.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------cCCCcEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEVDQI 184 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~--------~~~iD~V 184 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.++..+...+. ..++.++.+|++|.. +.++|+|
T Consensus 13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~l 90 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM--AGQVEVRELDLQDLSSVRRFADGVSGADVL 90 (291)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS--SSEEEEEECCTTCHHHHHHHHHTCCCEEEE
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--cCCeeEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence 468899999999999999999999999999999999765544333332 457899999998862 2468999
Q ss_pred EEccCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCC-CCCCcCCCCCCCCCCCCcCcccc
Q 024766 185 YHLACPASPVH--YKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDP-LEHPQKETYWGNVNPIGELLAAT 260 (263)
Q Consensus 185 i~~Ag~~~~~~--~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~-~~~~~~E~~~~~~~p~~~~~~Y~ 260 (263)
|||||+..... ..+++++.+++|+.|+.++++++..... +||++||.+.+... ......+ ...+..+...|+
T Consensus 91 v~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~----~~~~~~~~~~Y~ 166 (291)
T 3rd5_A 91 INNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNW----RSRRYSPWLAYS 166 (291)
T ss_dssp EECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTC----SSSCCCHHHHHH
T ss_pred EECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCcccccc----cccCCCCcchHH
Confidence 99999765332 3456789999999999999999987765 99999998776432 1111111 124667788899
Q ss_pred ccC
Q 024766 261 AVV 263 (263)
Q Consensus 261 ~sK 263 (263)
+||
T Consensus 167 ~sK 169 (291)
T 3rd5_A 167 QSK 169 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-19 Score=157.69 Aligned_cols=122 Identities=11% Similarity=0.057 Sum_probs=97.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------ccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~~ 179 (263)
.+++|+++||||+++||++++++|+++|++|++++|+.+..++...++. ...++..+.+|++++ .+.
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 83 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYS 83 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999999998665554444432 356889999999887 346
Q ss_pred CCcEEEEccCCCCC-CCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCccee
Q 024766 180 EVDQIYHLACPASP-VHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vy 234 (263)
.+|++|||||+... ..+. +++++.+++|+.|++++++++. +.+. +||++||.+.+
T Consensus 84 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~ 148 (254)
T 4fn4_A 84 RIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGI 148 (254)
T ss_dssp CCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhc
Confidence 79999999997543 2222 3578889999999999988863 3344 99999997654
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.9e-20 Score=173.67 Aligned_cols=130 Identities=24% Similarity=0.290 Sum_probs=105.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhC---CCeEEEEecCCccch--hhhhhhcC--------------CCceEEEEccc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDR---GDEVIVIDNFFTGRK--DNLVHHFR--------------NPRFELIRHDV 173 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~---G~~V~~l~r~~~~~~--~~~~~~~~--------------~~~v~~~~~Dv 173 (263)
..++|+|+||||+||||++|+++|+++ |++|++++|+..... +.+.+.+. ..++.++.+|+
T Consensus 70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 149 (478)
T 4dqv_A 70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGDK 149 (478)
T ss_dssp CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECCT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeEC
Confidence 457889999999999999999999999 899999999765431 11112222 26899999999
Q ss_pred cccc-----------cCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCC
Q 024766 174 VEPI-----------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHP 241 (263)
Q Consensus 174 ~~~~-----------~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~ 241 (263)
.++. +.++|+||||||.... .++.+.+++|+.|+.+++++|++.+. +||++||.++|+.....+
T Consensus 150 ~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~----~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~~ 225 (478)
T 4dqv_A 150 SEPDLGLDQPMWRRLAETVDLIVDSAAMVNA----FPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSA 225 (478)
T ss_dssp TSGGGGCCHHHHHHHHHHCCEEEECCSSCSB----SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTTT
T ss_pred CCcccCCCHHHHHHHHcCCCEEEECccccCC----cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCCC
Confidence 8543 2469999999987543 45567789999999999999998886 999999999999877788
Q ss_pred cCCCC
Q 024766 242 QKETY 246 (263)
Q Consensus 242 ~~E~~ 246 (263)
++|++
T Consensus 226 ~~E~~ 230 (478)
T 4dqv_A 226 FTEDA 230 (478)
T ss_dssp CCSSS
T ss_pred cCCcc
Confidence 88885
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-19 Score=152.68 Aligned_cols=117 Identities=16% Similarity=0.263 Sum_probs=92.1
Q ss_pred ccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCce-EEEEcccc---ccccCCCcEEE
Q 024766 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF-ELIRHDVV---EPILLEVDQIY 185 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v-~~~~~Dv~---~~~~~~iD~Vi 185 (263)
....+++|+|+||||+|+||++++++|+++|++|++++|+.+...+.. ...+ .++.+|++ .+.+.++|+||
T Consensus 15 ~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~-----~~~~~~~~~~Dl~~~~~~~~~~~D~vi 89 (236)
T 3e8x_A 15 ENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELR-----ERGASDIVVANLEEDFSHAFASIDAVV 89 (236)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-----HTTCSEEEECCTTSCCGGGGTTCSEEE
T ss_pred cccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHH-----hCCCceEEEcccHHHHHHHHcCCCEEE
Confidence 344578999999999999999999999999999999999765433221 1357 88899987 23556899999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceec
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg 235 (263)
||||... ..+++..+++|+.|+.++++++++.+. +||++||.+.+.
T Consensus 90 ~~ag~~~----~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~ 136 (236)
T 3e8x_A 90 FAAGSGP----HTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVD 136 (236)
T ss_dssp ECCCCCT----TSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSC
T ss_pred ECCCCCC----CCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 9998643 357889999999999999999998886 999999965543
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=155.93 Aligned_cols=121 Identities=17% Similarity=0.095 Sum_probs=96.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++..+.+|++|+ .+..
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 85 (271)
T 3tzq_B 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASV--GRGAVHHVVDLTNEVSVRALIDFTIDTFGR 85 (271)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--CCCeEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 578899999999999999999999999999999999877655544443 45788899999886 2247
Q ss_pred CcEEEEccCCCCCC--C----CCCCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPV--H----YKYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~--~----~~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
+|+||||||..... . ..+++++.+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 86 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 151 (271)
T 3tzq_B 86 LDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHA 151 (271)
T ss_dssp CCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS
T ss_pred CCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcC
Confidence 99999999976331 1 12346788999999999999987 45554 999999987664
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=154.21 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc--------ccCCCcEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQIY 185 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~--------~~~~iD~Vi 185 (263)
++||+++||||+++||++++++|+++|++|++++|+.+...+. ...++..+.+|++|+ .+.++|++|
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~-----~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLV 83 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAP-----RHPRIRREELDITDSQRLQRLFEALPRLDVLV 83 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSC-----CCTTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhh-----hcCCeEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 6899999999999999999999999999999999976554322 345788999999886 456799999
Q ss_pred EccCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHH----HcCCeEEEEcCccee
Q 024766 186 HLACPASPVH--YKYNPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVY 234 (263)
Q Consensus 186 ~~Ag~~~~~~--~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~iV~vSS~~vy 234 (263)
||||+..+.. ..++|++.+++|+.|++++++++. +.+.+||++||....
T Consensus 84 NNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~ 138 (242)
T 4b79_A 84 NNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMYST 138 (242)
T ss_dssp ECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGGGT
T ss_pred ECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 9999764432 123578899999999999988763 334599999997554
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-19 Score=157.15 Aligned_cols=123 Identities=20% Similarity=0.077 Sum_probs=98.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------ccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~~ 179 (263)
+++||+++||||+++||+++++.|+++|++|++.+|+.+...+...++. ...++..+.+|++|+ .+.
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 5789999999999999999999999999999999998665555444432 356788999999887 345
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH-----HcC-CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK-----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~-----~~~-~~iV~vSS~~vyg 235 (263)
.+|++|||||......+. +++++.+++|+.|++++++++. +.+ .+||++||.+.+.
T Consensus 86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~ 151 (255)
T 4g81_D 86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQA 151 (255)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcC
Confidence 799999999986655543 3578889999999999988752 223 3999999986553
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-20 Score=162.81 Aligned_cols=134 Identities=22% Similarity=0.185 Sum_probs=100.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccC--CCcEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIY 185 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~--~iD~Vi 185 (263)
.+++|+|+||||+||||++|+++|+++|+ +... ....++.+.+|+.|. .+. ++|+||
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~----------~~~~~~~~~~D~~d~~~~~~~~~~~~~d~Vi 66 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAG------LPGE----------DWVFVSSKDADLTDTAQTRALFEKVQPTHVI 66 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTC----------EEEECCTTTCCTTSHHHHHHHHHHSCCSEEE
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCC------cccc----------cccccCceecccCCHHHHHHHHhhcCCCEEE
Confidence 35788999999999999999999999997 1100 001222335677665 233 399999
Q ss_pred EccCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCc-ccccc
Q 024766 186 HLACPASPV-HYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELL-AATAV 262 (263)
Q Consensus 186 ~~Ag~~~~~-~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~-~Y~~s 262 (263)
|+||..... ....++...+++|+.|+.+++++|++.++ +||++||.++||.....+++|+++... +..+.. .|+.|
T Consensus 67 h~A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~-~~~p~~~~Y~~s 145 (319)
T 4b8w_A 67 HLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNG-PPHNSNFGYSYA 145 (319)
T ss_dssp ECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGBS-CCCSSSHHHHHH
T ss_pred ECceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccccccC-CCCCCcchHHHH
Confidence 999874321 24567888999999999999999999987 899999999999988889999964321 333444 58877
Q ss_pred C
Q 024766 263 V 263 (263)
Q Consensus 263 K 263 (263)
|
T Consensus 146 K 146 (319)
T 4b8w_A 146 K 146 (319)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=160.53 Aligned_cols=130 Identities=27% Similarity=0.325 Sum_probs=104.2
Q ss_pred EEEEEcCCChHHHHHHHHHHhC--CCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccC--CCcEEEEcc
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLA 188 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~--G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~--~iD~Vi~~A 188 (263)
+|+||||+||||++++++|+++ |++|++++|+..... .+.++.+|+.|. .+. ++|+|||+|
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----------~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a 70 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG----------GIKFITLDVSNRDEIDRAVEKYSIDAIFHLA 70 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT----------TCCEEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc----------CceEEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence 4899999999999999999999 889999998654321 356788999875 233 799999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCC-CCCCcCCCCCCCCCCCCcCccccccC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDP-LEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~-~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
|.... ....+++..+++|+.|+.++++++++.+. +||++||.++|+.. ...+.+|+ .|..+.+.|+.||
T Consensus 71 ~~~~~-~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~-----~~~~p~~~Y~~sK 141 (317)
T 3ajr_A 71 GILSA-KGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSI-----TITRPRTMFGVTK 141 (317)
T ss_dssp CCCHH-HHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSS-----SCCCCCSHHHHHH
T ss_pred cccCC-ccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCcccc-----ccCCCCchHHHHH
Confidence 86432 12346788999999999999999999887 99999999999964 33456666 4667788899876
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.5e-20 Score=161.86 Aligned_cols=146 Identities=21% Similarity=0.285 Sum_probs=97.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEec-CCccc--hhhhhhhcC-CCceEEEEcccccc-----ccCCCcEEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN-FFTGR--KDNLVHHFR-NPRFELIRHDVVEP-----ILLEVDQIYH 186 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r-~~~~~--~~~~~~~~~-~~~v~~~~~Dv~~~-----~~~~iD~Vi~ 186 (263)
+|+|+||||+||||++++++|+++|++|+++.| +.... ...+..... ..++.++.+|++|. .+.++|+|||
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih 80 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH 80 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence 579999999999999999999999999999888 43221 111111100 12577888999875 3457999999
Q ss_pred ccCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcCcce-ecCC-CCCCcCCCCCCCCC---CCCcCc-
Q 024766 187 LACPASPVHYKYN-PVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTSEV-YGDP-LEHPQKETYWGNVN---PIGELL- 257 (263)
Q Consensus 187 ~Ag~~~~~~~~~~-~~~~~~~Nv~gt~~ll~~a~~~-~~-~iV~vSS~~v-yg~~-~~~~~~E~~~~~~~---p~~~~~- 257 (263)
||+.. .....+ .++.+++|+.|+.+++++|++. +. +||++||.++ |+.+ ...+++|++|.+.+ |..+..
T Consensus 81 ~A~~~--~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~ 158 (322)
T 2p4h_X 81 TASPI--DFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGW 158 (322)
T ss_dssp CCCCC----------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTTH
T ss_pred cCCcc--cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCcccc
Confidence 99643 111223 3458999999999999999887 55 9999999874 4433 23467777543211 112222
Q ss_pred cccccC
Q 024766 258 AATAVV 263 (263)
Q Consensus 258 ~Y~~sK 263 (263)
.|+.||
T Consensus 159 ~Y~~sK 164 (322)
T 2p4h_X 159 NYAVSK 164 (322)
T ss_dssp HHHHHH
T ss_pred cHHHHH
Confidence 588876
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.3e-19 Score=153.96 Aligned_cols=121 Identities=19% Similarity=0.150 Sum_probs=95.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ...+.++.+|++|+. +.+
T Consensus 5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 82 (259)
T 4e6p_A 5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI--GPAAYAVQMDVTRQDSIDAAIAATVEHAGG 82 (259)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHSSS
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCCceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999998765544443333 356789999998862 237
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc------CCeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV------GAKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~------~~~iV~vSS~~vyg 235 (263)
+|+||||||........ +++++.+++|+.|+.++++++.+. +.+||++||.+.+.
T Consensus 83 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 147 (259)
T 4e6p_A 83 LDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRR 147 (259)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhcc
Confidence 99999999976544322 346778899999999999987432 23999999987653
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.3e-19 Score=174.13 Aligned_cols=146 Identities=24% Similarity=0.397 Sum_probs=115.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------cCCCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------~~~iD~Vi~ 186 (263)
+++|+|+||||+||||++++++|+++ |++|++++|+...... .....++.++.+|+.+.. +.++|+|||
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~----~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih 388 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR----FLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLP 388 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGG----GTTCTTEEEEECCTTTCHHHHHHHHHHCSEEEE
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhh----hccCCceEEEECCCCCcHHHHHHhhcCCCEEEE
Confidence 46789999999999999999999998 8999999997554322 223457889999998742 236999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCC-CCCC-CcCccccccC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGN-VNPI-GELLAATAVV 263 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~-~~p~-~~~~~Y~~sK 263 (263)
|||.........++.+.+++|+.|+.+++++|++.+.+||++||.++||.....+++|+++.. ..|. .+.+.|+.||
T Consensus 389 ~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y~~sK 467 (660)
T 1z7e_A 389 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSK 467 (660)
T ss_dssp CCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHHHHHH
T ss_pred CceecCccccccCHHHHHHhhhHHHHHHHHHHHHhCCEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCcHHHH
Confidence 998755433445788899999999999999999888899999999999987777888886421 1222 4567898876
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-19 Score=152.08 Aligned_cols=124 Identities=16% Similarity=0.150 Sum_probs=97.1
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------c
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~ 178 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +
T Consensus 8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 87 (256)
T 3gaf_A 8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQF 87 (256)
T ss_dssp TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35788999999999999999999999999999999997655443333322 3567899999998862 2
Q ss_pred CCCcEEEEccCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
..+|+||||||......++ ++++..+++|+.|+.++++++. +.+. +||++||.+.+.
T Consensus 88 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 152 (256)
T 3gaf_A 88 GKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGEN 152 (256)
T ss_dssp SCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTC
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcC
Confidence 4799999999976544332 3467789999999999999863 3443 999999987653
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.5e-19 Score=152.72 Aligned_cols=122 Identities=17% Similarity=0.105 Sum_probs=94.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~ 179 (263)
+++|+++||||+||||++++++|+++|++|++++++.....+...+.+ ...++..+.+|++|.. +.
T Consensus 2 l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 81 (246)
T 3osu_A 2 KMTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFG 81 (246)
T ss_dssp CCSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 467899999999999999999999999999999886544333332222 3567889999998862 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
++|+||||||........ +++++.+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 146 (246)
T 3osu_A 82 SLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAV 146 (246)
T ss_dssp CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC
Confidence 799999999976543322 346778999999999999987 44444 999999976553
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.8e-19 Score=156.02 Aligned_cols=123 Identities=18% Similarity=0.153 Sum_probs=97.3
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC--CCceEEEEcccccc------------
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR--NPRFELIRHDVVEP------------ 176 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~Dv~~~------------ 176 (263)
...+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+... ..++.++.+|++|+
T Consensus 36 m~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 115 (293)
T 3rih_A 36 MFDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVD 115 (293)
T ss_dssp TTCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999987665544444322 25789999999886
Q ss_pred ccCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcce
Q 024766 177 ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEV 233 (263)
Q Consensus 177 ~~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~v 233 (263)
.+..+|+||||||......+. +++++.+++|+.|+.++++++ ++.+ .+||++||...
T Consensus 116 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~ 181 (293)
T 3rih_A 116 AFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITG 181 (293)
T ss_dssp HHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBT
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhh
Confidence 234799999999976544332 246788999999999999987 3444 49999999764
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-19 Score=153.50 Aligned_cols=121 Identities=17% Similarity=0.139 Sum_probs=95.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +
T Consensus 7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 86 (262)
T 3pk0_A 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF 86 (262)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999998665544433332 2257899999998862 2
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEEcCcce
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEV 233 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~-~~iV~vSS~~v 233 (263)
.++|+||||||......+. +++++.+++|+.|+.++++++.+. + .+||++||...
T Consensus 87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~ 150 (262)
T 3pk0_A 87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITG 150 (262)
T ss_dssp SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBT
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhh
Confidence 4799999999976544332 246778999999999999887543 4 49999999754
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-19 Score=159.51 Aligned_cols=128 Identities=21% Similarity=0.315 Sum_probs=101.1
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccC--CCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILL--EVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~--~iD~Vi~~A 188 (263)
+|+|+||||+||||++++++|+++|++|++++|+. .+|+.|. .+. ++|+|||+|
T Consensus 3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~-------------------~~D~~d~~~~~~~~~~~~~d~vih~a 63 (321)
T 1e6u_A 3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-------------------ELNLLDSRAVHDFFASERIDQVYLAA 63 (321)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-------------------TCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc-------------------cCCccCHHHHHHHHHhcCCCEEEEcC
Confidence 46899999999999999999999999999987642 1355443 344 799999999
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcC-ccccccC
Q 024766 189 CPASPV-HYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGEL-LAATAVV 263 (263)
Q Consensus 189 g~~~~~-~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~-~~Y~~sK 263 (263)
|..... ....++...+++|+.|+.+++++|++.+. +||++||.++||.....+++|+++.. .+..+. +.|+.+|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~-~~~~p~~~~Y~~sK 140 (321)
T 1e6u_A 64 AKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQ-GTLEPTNEPYAIAK 140 (321)
T ss_dssp CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTS-SCCCGGGHHHHHHH
T ss_pred eecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCcccccc-CCCCCCCCccHHHH
Confidence 864321 12346788899999999999999999887 99999999999987778889986422 244443 5888876
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-19 Score=155.40 Aligned_cols=127 Identities=19% Similarity=0.153 Sum_probs=101.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----cC--CCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----LL--EVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~~--~iD~Vi~~Ag 189 (263)
|+|+||||+||||++++++|++ |++|++++|+.... .. +.+|+.|+. +. ++|+||||||
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~~----------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a~ 66 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEIQ----------GG---YKLDLTDFPRLEDFIIKKRPDVIINAAA 66 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCCT----------TC---EECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcCC----------CC---ceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence 4799999999999999999995 89999999875321 11 778888752 23 3999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.........+++..+++|+.|+.++++++++.+.+||++||.++|+...+ +++|++ |..+.+.|+.+|
T Consensus 67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~iv~~SS~~~~~~~~~-~~~e~~-----~~~~~~~Y~~sK 134 (273)
T 2ggs_A 67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDSYIVHISTDYVFDGEKG-NYKEED-----IPNPINYYGLSK 134 (273)
T ss_dssp CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEGGGSCSSSC-SBCTTS-----CCCCSSHHHHHH
T ss_pred ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCCeEEEEecceeEcCCCC-CcCCCC-----CCCCCCHHHHHH
Confidence 65432223578889999999999999999988789999999999986543 788884 556778898876
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.6e-19 Score=152.99 Aligned_cols=121 Identities=19% Similarity=0.231 Sum_probs=90.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++.++.+|++|+. +..
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (257)
T 3tpc_A 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAEL--GAAVRFRNADVTNEADATAALAFAKQEFGH 81 (257)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------CEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 367899999999999999999999999999999999876554433332 356888999998862 247
Q ss_pred CcEEEEccCCCCCCCC--------CCCHHHHHHHHHHHHHHHHHHHHHc----------C-CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHY--------KYNPVKTIKTNVMGTLNMLGLAKRV----------G-AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~--------~~~~~~~~~~Nv~gt~~ll~~a~~~----------~-~~iV~vSS~~vyg 235 (263)
+|+||||||....... .+++++.+++|+.|+.++++++.+. + .+||++||.+.+.
T Consensus 82 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~ 155 (257)
T 3tpc_A 82 VHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFD 155 (257)
T ss_dssp CCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred CCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcc
Confidence 9999999997644322 2356788999999999999988642 2 3899999987764
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-19 Score=175.69 Aligned_cols=146 Identities=26% Similarity=0.443 Sum_probs=111.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh--cCCCceEEEEccccccc-----cC--CCcE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEPI-----LL--EVDQ 183 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~Dv~~~~-----~~--~iD~ 183 (263)
.+++|+|+||||+||||++|+++|+++|++|++++|......+..... .....+.++.+|+.+.. +. ++|+
T Consensus 8 ~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~ 87 (699)
T 1z45_A 8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDS 87 (699)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCE
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCE
Confidence 356789999999999999999999999999999998755432222111 12346788899998752 33 7999
Q ss_pred EEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCC----CCCcCCCCCCCCCCCCcCcc
Q 024766 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPL----EHPQKETYWGNVNPIGELLA 258 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~----~~~~~E~~~~~~~p~~~~~~ 258 (263)
||||||.........++.+.+++|+.|+.+++++|++.+. +||++||.++||... ..+..|+ .|..+.+.
T Consensus 88 Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~-----~~~~p~~~ 162 (699)
T 1z45_A 88 VIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTNP 162 (699)
T ss_dssp EEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCSH
T ss_pred EEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCcccc-----CCCCCCCh
Confidence 9999986543223345678899999999999999988876 999999999998643 2466777 36667788
Q ss_pred ccccC
Q 024766 259 ATAVV 263 (263)
Q Consensus 259 Y~~sK 263 (263)
|+.||
T Consensus 163 Y~~sK 167 (699)
T 1z45_A 163 YGHTK 167 (699)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99886
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=151.81 Aligned_cols=122 Identities=15% Similarity=0.161 Sum_probs=96.0
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh-cCCCceEEEEcccccc------------cc
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEP------------IL 178 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~Dv~~~------------~~ 178 (263)
.++++|+++||||+++||++++++|+++|++|++++|+.+... .+.+. ....++..+.+|++++ .+
T Consensus 3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~ 81 (258)
T 4gkb_A 3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGA-FLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATF 81 (258)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHH-HHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHH-HHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHh
Confidence 3589999999999999999999999999999999999866532 22222 1356788999999886 34
Q ss_pred CCCcEEEEccCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHH----HcCCeEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~----~~~~~iV~vSS~~vy 234 (263)
..+|++|||||+......+ +++++.+++|+.|++++++++. +.+.+||++||.+.+
T Consensus 82 G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~~~ 144 (258)
T 4gkb_A 82 GRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSKTAV 144 (258)
T ss_dssp SCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTHHH
T ss_pred CCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeehhhc
Confidence 6799999999975443333 3467889999999999988763 334599999997654
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-19 Score=155.11 Aligned_cols=124 Identities=18% Similarity=0.160 Sum_probs=94.9
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC----CCceEEEEccccccc----------
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR----NPRFELIRHDVVEPI---------- 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~Dv~~~~---------- 177 (263)
..+++|+++||||+||||++++++|+++|++|++++|+.+...+...+... ..++.++.+|++|+.
T Consensus 7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 86 (281)
T 3svt_A 7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVT 86 (281)
T ss_dssp -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999976654444333321 127889999998862
Q ss_pred --cCCCcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCcceec
Q 024766 178 --LLEVDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYG 235 (263)
Q Consensus 178 --~~~iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vyg 235 (263)
+..+|+||||||.... ... .+++++.+++|+.|+.++++++.+ .+. +||++||.+.+.
T Consensus 87 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 156 (281)
T 3svt_A 87 AWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASN 156 (281)
T ss_dssp HHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHS
T ss_pred HHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcC
Confidence 3479999999997322 222 234678899999999999998643 333 999999987764
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=150.42 Aligned_cols=120 Identities=13% Similarity=0.075 Sum_probs=94.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc-------cCCCcEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI-------LLEVDQI 184 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~-------~~~iD~V 184 (263)
+++||+++||||+++||+++++.|+++|++|++.+|+..+ +...... ...++..+.+|++|+. ...+|++
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~--~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiL 83 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPD--ETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDIL 83 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCH--HHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEE
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHH--HHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEE
Confidence 5899999999999999999999999999999999987542 1121111 3567889999999873 2459999
Q ss_pred EEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCccee
Q 024766 185 YHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVY 234 (263)
Q Consensus 185 i~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vy 234 (263)
|||||+.....+. ++|++.+++|+.|++++++++. +.+ .+||++||...+
T Consensus 84 VNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~ 143 (247)
T 4hp8_A 84 VNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSF 143 (247)
T ss_dssp EECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred EECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhC
Confidence 9999986654433 3578889999999999988753 333 399999997554
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-18 Score=151.08 Aligned_cols=123 Identities=15% Similarity=0.063 Sum_probs=94.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------c-
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L- 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~- 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +
T Consensus 6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (260)
T 2ae2_A 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 85 (260)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999999999999987654433322221 2457888999998862 2
Q ss_pred CCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
.++|+||||||....... .+++++.+++|+.|+.++++++. +.+. +||++||.+.+.
T Consensus 86 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 151 (260)
T 2ae2_A 86 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGAL 151 (260)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTS
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc
Confidence 579999999997543322 23467789999999999999873 4444 999999987654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.78 E-value=6e-19 Score=155.01 Aligned_cols=121 Identities=16% Similarity=0.076 Sum_probs=98.5
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILL 179 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~ 179 (263)
..++||+++||||+++||++++++|+++|++|++++|+.+..++...+. ..++..+.+|++|+ .+.
T Consensus 25 ~rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~--g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 102 (273)
T 4fgs_A 25 QRLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI--GGGAVGIQADSANLAELDRLYEKVKAEAG 102 (273)
T ss_dssp CTTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred chhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc--CCCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3589999999999999999999999999999999999876655554444 45678899999886 345
Q ss_pred CCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~vy 234 (263)
.+|++|||||......+.+ +|++.+++|+.|++++++++.+.- .+||++||...+
T Consensus 103 ~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~ 164 (273)
T 4fgs_A 103 RIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGS 164 (273)
T ss_dssp CEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGG
T ss_pred CCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhc
Confidence 7999999999765544433 578889999999999999986542 389999997554
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=9.1e-19 Score=154.78 Aligned_cols=124 Identities=14% Similarity=0.162 Sum_probs=98.3
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------ 177 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+.
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 122 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ 122 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999999999999999998664443333322 3467899999998862
Q ss_pred cCCCcEEEEccCCCCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVH-----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
+..+|+||||||...... ..+++++.+++|+.|+.++++++... +.+||++||...+.
T Consensus 123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~ 188 (291)
T 3ijr_A 123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYE 188 (291)
T ss_dssp HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHH
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcC
Confidence 247999999999754322 22356888999999999999998765 23899999987765
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-19 Score=156.92 Aligned_cols=146 Identities=15% Similarity=0.059 Sum_probs=105.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc-----------hhhhh-hh-cCCCceEEEEccccccc--
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-----------KDNLV-HH-FRNPRFELIRHDVVEPI-- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~-----------~~~~~-~~-~~~~~v~~~~~Dv~~~~-- 177 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.... .+... +. ....++.++.+|+++..
T Consensus 7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence 57889999999999999999999999999999999872211 11111 11 13567899999998862
Q ss_pred ----------cCCCcEEEEccCCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceecCCCCCCc
Q 024766 178 ----------LLEVDQIYHLACPASPV--HYKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYGDPLEHPQ 242 (263)
Q Consensus 178 ----------~~~iD~Vi~~Ag~~~~~--~~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg~~~~~~~ 242 (263)
+..+|+||||||..... ...+++++.+++|+.|+.++++++... +.+||++||.+.+......+.
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~ 166 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPPG 166 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC-
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccccc
Confidence 24799999999975443 123457889999999999999998764 239999999876653333333
Q ss_pred CCCCCCCCCCCCcCccccccC
Q 024766 243 KETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 243 ~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.|. .+......|++||
T Consensus 167 ~~~-----~~~~~~~~Y~asK 182 (287)
T 3pxx_A 167 AGG-----PQGPGGAGYSYAK 182 (287)
T ss_dssp ---------CHHHHHHHHHHH
T ss_pred ccc-----cCCCccchHHHHH
Confidence 333 2444566788876
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.5e-19 Score=153.68 Aligned_cols=124 Identities=14% Similarity=0.011 Sum_probs=93.9
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------c
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~ 178 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +
T Consensus 20 ~m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 99 (279)
T 3sju_A 20 HMSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERF 99 (279)
T ss_dssp -----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 34678999999999999999999999999999999997655444433332 2567899999998862 2
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH------cCC-eEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR------VGA-KFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~------~~~-~iV~vSS~~vyg 235 (263)
..+|+||||||........ +++++.+++|+.|+.++++++.+ .+. +||++||.+.+.
T Consensus 100 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~ 167 (279)
T 3sju_A 100 GPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQ 167 (279)
T ss_dssp CSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTS
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhcc
Confidence 4799999999976544332 24677889999999999998754 343 999999987653
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=150.56 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=95.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +.
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 82 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFG 82 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999999998665544433332 2457889999998862 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH-----HcC-CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK-----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~-----~~~-~~iV~vSS~~vyg 235 (263)
.+|+||||||........ +++++.+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 148 (257)
T 3imf_A 83 RIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWD 148 (257)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGS
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhcc
Confidence 799999999975443322 3467889999999999999873 332 4999999987653
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.8e-19 Score=153.35 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=97.3
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc-----------
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI----------- 177 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~----------- 177 (263)
...+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++++.
T Consensus 22 ~~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 101 (277)
T 4fc7_A 22 PDLLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALK 101 (277)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999998655444433331 2467899999998862
Q ss_pred -cCCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----c-CCeEEEEcCcceec
Q 024766 178 -LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----V-GAKFLLTSTSEVYG 235 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~-~~~iV~vSS~~vyg 235 (263)
+..+|+||||||....... .+++++.+++|+.|+.++++++.. . +.+||++||...+.
T Consensus 102 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 169 (277)
T 4fc7_A 102 EFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNR 169 (277)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHH
T ss_pred HcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC
Confidence 2479999999996544332 234678899999999999998743 2 34999999986653
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-19 Score=154.74 Aligned_cols=124 Identities=12% Similarity=0.077 Sum_probs=95.0
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc-----------
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI----------- 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~----------- 177 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+...+.+ ...++.++.+|++|+.
T Consensus 21 ~~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 100 (281)
T 3v2h_A 21 QSMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVAD 100 (281)
T ss_dssp -CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999985443333322222 2467899999998862
Q ss_pred -cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 178 -LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
+..+|+||||||......+. +++++.+++|+.|+.++++++ ++.+. +||++||.+.+.
T Consensus 101 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 168 (281)
T 3v2h_A 101 RFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLV 168 (281)
T ss_dssp HTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred HCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCccccc
Confidence 34799999999976544432 346788999999999999986 33443 899999986653
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=150.41 Aligned_cols=122 Identities=11% Similarity=0.003 Sum_probs=95.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccccc-----------CC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPIL-----------LE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~~-----------~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+.. ..
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~ 83 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAP 83 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence 3578999999999999999999999999999999998766554443332 25678999999988621 47
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vy 234 (263)
+|+||||||......+. +++++.+++|+.|+.++++++ ++.+ .+||++||.+.+
T Consensus 84 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 146 (252)
T 3h7a_A 84 LEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASL 146 (252)
T ss_dssp EEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGT
T ss_pred ceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHc
Confidence 89999999976543332 246788999999999998876 3344 399999997655
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=149.18 Aligned_cols=121 Identities=18% Similarity=0.191 Sum_probs=93.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC-ccchhhhhhhcCCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHHFRNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~-~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+. +...+.+.. ...++.++.+|++|+. +.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (249)
T 2ew8_A 4 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRN--LGRRVLTVKCDVSQPGDVEAFGKQVISTFG 81 (249)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHH--TTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHh--cCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 35788999999999999999999999999999999976 433332221 2457888999998862 35
Q ss_pred CCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
++|+||||||......+ .+++++.+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 146 (249)
T 2ew8_A 82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWL 146 (249)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc
Confidence 79999999997544332 2246778999999999988874 44444 999999987765
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.2e-19 Score=154.00 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=98.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+||||++++++|+++|++|++++|+.+...+...+. ..++.++.+|++|.. +.++
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 80 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY--PDRAEAISLDVTDGERIDVVAADVLARYGRV 80 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC--TTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc--cCCceEEEeeCCCHHHHHHHHHHHHHhCCCC
Confidence 35789999999999999999999999999999999866544433322 457899999998862 2379
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHH----HHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCC
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGL----AKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNP 252 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~----a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p 252 (263)
|+||||||......+. +++++.+++|+.|+.++++. +++.+. +||++||.+.+. +
T Consensus 81 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~----------------~ 144 (281)
T 3m1a_A 81 DVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQL----------------S 144 (281)
T ss_dssp SEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC----------------C
T ss_pred CEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccC----------------C
Confidence 9999999975433322 34677899999996665555 455554 999999987653 2
Q ss_pred CCcCccccccC
Q 024766 253 IGELLAATAVV 263 (263)
Q Consensus 253 ~~~~~~Y~~sK 263 (263)
..+...|++||
T Consensus 145 ~~~~~~Y~~sK 155 (281)
T 3m1a_A 145 FAGFSAYSATK 155 (281)
T ss_dssp CTTCHHHHHHH
T ss_pred CCCchHHHHHH
Confidence 33556787776
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=152.68 Aligned_cols=134 Identities=17% Similarity=0.086 Sum_probs=102.8
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~ 179 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++..+.+|++|.. +.
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEI--GSKAFGVRVDVSSAKDAESMVEKTTAKWG 100 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3468899999999999999999999999999999998765444433332 457889999998862 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCcceecCCCCCCcCCCCCCCC
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~ 250 (263)
++|+||||||........ +++++.+++|+.|+.++++++.. .+. +||++||...+.
T Consensus 101 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--------------- 165 (277)
T 4dqx_A 101 RVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATS--------------- 165 (277)
T ss_dssp CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTS---------------
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCc---------------
Confidence 799999999976544332 24677889999999999888743 333 999999987764
Q ss_pred CCCCcCccccccC
Q 024766 251 NPIGELLAATAVV 263 (263)
Q Consensus 251 ~p~~~~~~Y~~sK 263 (263)
+......|++||
T Consensus 166 -~~~~~~~Y~asK 177 (277)
T 4dqx_A 166 -AIADRTAYVASK 177 (277)
T ss_dssp -CCTTBHHHHHHH
T ss_pred -CCCCChhHHHHH
Confidence 233456787776
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=152.68 Aligned_cols=121 Identities=17% Similarity=0.056 Sum_probs=95.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++..+.+|++|+. +..
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 103 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKI--GCGAAACRVDVSDEQQIIAMVDACVAAFGG 103 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CSSCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--CCcceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999999999999999765544443333 457889999998862 247
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vyg 235 (263)
+|+||||||......+. +++++.+++|+.|+.++++++.. .+. +||++||...+.
T Consensus 104 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~ 167 (277)
T 3gvc_A 104 VDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQV 167 (277)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc
Confidence 99999999986543332 34678899999999999988743 343 899999976553
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=152.03 Aligned_cols=124 Identities=13% Similarity=0.064 Sum_probs=95.3
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc-----------c
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI-----------L 178 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~-----------~ 178 (263)
...+++|+++||||+|+||++++++|+++|++|++++|. +...+...+.. ...++..+.+|++|.. +
T Consensus 26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 104 (273)
T 3uf0_A 26 PFSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAAT 104 (273)
T ss_dssp TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhc
Confidence 345789999999999999999999999999999999965 32233222222 3467889999998862 2
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
.++|+||||||........ +++++.+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 105 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~ 170 (273)
T 3uf0_A 105 RRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQ 170 (273)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred CCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcC
Confidence 4799999999986544432 3467889999999999999863 3444 999999987663
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-18 Score=150.50 Aligned_cols=122 Identities=12% Similarity=0.060 Sum_probs=94.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC--CCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR--NPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~Dv~~~~------------~~ 179 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+... ..++.++.+|++|+. +.
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (263)
T 3ai3_A 5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFG 84 (263)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5789999999999999999999999999999999875543332222211 456889999998862 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
++|+||||||......+. +++++.+++|+.|+.++++++. +.+. +||++||.+.+.
T Consensus 85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 149 (263)
T 3ai3_A 85 GADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQ 149 (263)
T ss_dssp SCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC
Confidence 799999999976443322 2467889999999999988864 3344 999999988775
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=151.45 Aligned_cols=123 Identities=17% Similarity=0.130 Sum_probs=93.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc------------chhhhhhh-cCCCceEEEEccccccc--
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG------------RKDNLVHH-FRNPRFELIRHDVVEPI-- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~------------~~~~~~~~-~~~~~v~~~~~Dv~~~~-- 177 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+... ..+..... ....++.++.+|++|+.
T Consensus 7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v 86 (281)
T 3s55_A 7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAAL 86 (281)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence 5788999999999999999999999999999999996332 11111111 13567899999998862
Q ss_pred ----------cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 178 ----------LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 ----------~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
+..+|+||||||+.....+. +++++.+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 163 (281)
T 3s55_A 87 ESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHS 163 (281)
T ss_dssp HHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGS
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcC
Confidence 24799999999976543332 3467889999999999999863 334 3999999987664
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.5e-19 Score=152.58 Aligned_cols=124 Identities=12% Similarity=0.111 Sum_probs=96.8
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------ 177 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+.
T Consensus 16 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 95 (266)
T 4egf_A 16 LRLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEA 95 (266)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999997655444333321 2467899999998862
Q ss_pred cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~vyg 235 (263)
+..+|+||||||......+. +++++.+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 96 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~ 163 (266)
T 4egf_A 96 FGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALA 163 (266)
T ss_dssp HTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhcc
Confidence 24799999999986544332 24677899999999999888643 22 3999999987664
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=151.01 Aligned_cols=120 Identities=14% Similarity=0.073 Sum_probs=91.8
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~ 179 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.++..+.+... .+.++.+|++++. +.
T Consensus 23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~~g 98 (260)
T 3gem_A 23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQA----GAVALYGDFSCETGIMAFIDLLKTQTS 98 (260)
T ss_dssp ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHH----TCEEEECCTTSHHHHHHHHHHHHHHCS
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhc----CCeEEECCCCCHHHHHHHHHHHHHhcC
Confidence 3468899999999999999999999999999999999876544433332 3788999998862 24
Q ss_pred CCcEEEEccCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
.+|+||||||.......+ +++++.+++|+.|+.++++++.. .+ .+||++||...+.
T Consensus 99 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~ 162 (260)
T 3gem_A 99 SLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRK 162 (260)
T ss_dssp CCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGT
T ss_pred CCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcC
Confidence 799999999975543322 23567899999999999988743 33 4999999987664
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.1e-19 Score=153.97 Aligned_cols=125 Identities=13% Similarity=0.000 Sum_probs=96.0
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------c
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------I 177 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~ 177 (263)
...+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++..+.+|++|. .
T Consensus 23 ~~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 102 (270)
T 3ftp_A 23 DKTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKE 102 (270)
T ss_dssp CCTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999997654443332221 245678899999886 2
Q ss_pred cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
+..+|+||||||........ +++++.+++|+.|+.++++++.. .+ .+||++||.+.+.
T Consensus 103 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 169 (270)
T 3ftp_A 103 FGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSA 169 (270)
T ss_dssp HSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCC
Confidence 34799999999976543322 34678899999999999998742 23 4899999976653
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=160.60 Aligned_cols=144 Identities=21% Similarity=0.161 Sum_probs=104.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch------hhhhhh-------cCCCceEEEEcccccc----
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK------DNLVHH-------FRNPRFELIRHDVVEP---- 176 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~------~~~~~~-------~~~~~v~~~~~Dv~~~---- 176 (263)
..+|+|+||||+||||++++++|+++|++|++++|+..... +.+... ....++.++.+|+.++
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~ 146 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV 146 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCCC
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccCC
Confidence 45779999999999999999999999999999999866211 111111 0136789999999884
Q ss_pred ccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC-----CCCCCcCCCCCCCCC
Q 024766 177 ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD-----PLEHPQKETYWGNVN 251 (263)
Q Consensus 177 ~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~-----~~~~~~~E~~~~~~~ 251 (263)
.+.++|+||||||... ...++...+++|+.|+.+++++|++.+.+||++||.++ |. ....+++|+++. .
T Consensus 147 ~~~~~d~Vih~A~~~~---~~~~~~~~~~~Nv~g~~~l~~aa~~~~~~~v~~SS~~~-G~~~~~~~~~~~~~E~~~~--~ 220 (427)
T 4f6c_A 147 LPENMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDTEDVTFSEADVY--K 220 (427)
T ss_dssp CSSCCSEEEECCCCC----------CHHHHHHHHHHHHHHHHHHTTCEEEEEEEGGG-GSEECSSCSCCEECTTCSC--S
T ss_pred CcCCCCEEEECCcccC---CCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEECchHh-CCCccCCCCCccccccccc--c
Confidence 2457999999998653 33567788999999999999999984459999999988 54 345678888642 2
Q ss_pred CCCcCccccccC
Q 024766 252 PIGELLAATAVV 263 (263)
Q Consensus 252 p~~~~~~Y~~sK 263 (263)
+..+.+.|+.||
T Consensus 221 ~~~~~~~Y~~sK 232 (427)
T 4f6c_A 221 GQLLTSPYTRSK 232 (427)
T ss_dssp SCCCCSHHHHHH
T ss_pred CCCCCCchHHHH
Confidence 345788898876
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.4e-18 Score=151.86 Aligned_cols=122 Identities=13% Similarity=0.045 Sum_probs=94.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++..+.+|++|+. +..
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 81 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGR 81 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999997655444333322 2467888999998862 347
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
+|+||||||......+. +++++.+++|+.|+.++++++. +.+ .+||++||.+.+.
T Consensus 82 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~ 145 (264)
T 3tfo_A 82 IDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALS 145 (264)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcc
Confidence 99999999976543322 3467889999999999888764 334 3999999987654
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=9.5e-19 Score=150.97 Aligned_cols=121 Identities=21% Similarity=0.239 Sum_probs=95.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++..+.+|++|+. +..
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 80 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASI--GKKARAIAADISDPGSVKALFAEIQALTGG 80 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CTTEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 467899999999999999999999999999999998765544443333 457889999998862 247
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcC--CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG--AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~--~~iV~vSS~~vyg 235 (263)
+|+||||||......+. +++++.+++|+.|+.++++++ ++.+ .+||++||...+.
T Consensus 81 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 145 (247)
T 3rwb_A 81 IDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFA 145 (247)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhcc
Confidence 99999999976543332 346788999999999999884 4444 3999999987654
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=149.62 Aligned_cols=116 Identities=18% Similarity=0.285 Sum_probs=92.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCCCcE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEVDQ 183 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~iD~ 183 (263)
.|+|+||||+++||++++++|+++|++|++++|+.+...+... ...++..+.+|++|+ .+.++|+
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~---~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDi 78 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK---ERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDV 78 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT---TCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---hcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence 4899999999999999999999999999999987544333222 346788999999886 3467999
Q ss_pred EEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCCeEEEEcCccee
Q 024766 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVY 234 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~~iV~vSS~~vy 234 (263)
+|||||......+. +++++.+++|+.|++++.+++. +.+.+||++||...+
T Consensus 79 LVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G~IInisS~~~~ 137 (247)
T 3ged_A 79 LVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKGRIINIASTRAF 137 (247)
T ss_dssp EEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGT
T ss_pred EEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCcEEEEeecccc
Confidence 99999976554433 3478889999999999888763 344599999997654
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=146.29 Aligned_cols=127 Identities=13% Similarity=0.175 Sum_probs=89.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc---ccCCCcEEEEccCCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP---ILLEVDQIYHLACPASP 193 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~---~~~~iD~Vi~~Ag~~~~ 193 (263)
|+|+||||+|+||++++++|+++|++|++++|+.++..+ . . ..++++.+|+.|. .+.++|+||||||....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~----~-~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~ 74 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQ----T-H-KDINILQKDIFDLTLSDLSDQNVVVDAYGISPD 74 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHH----H-C-SSSEEEECCGGGCCHHHHTTCSEEEECCCSSTT
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhh----c-c-CCCeEEeccccChhhhhhcCCCEEEECCcCCcc
Confidence 479999999999999999999999999999997554322 1 1 5688999999886 46789999999986321
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcce-ecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEV-YGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~v-yg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
...+|+.++.++++++++.+. ++|++||.++ |+.+...+..|+ .|..+...|+.+|
T Consensus 75 ---------~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~-----~~~~~~~~y~~~k 132 (221)
T 3ew7_A 75 ---------EAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLES-----KGLREAPYYPTAR 132 (221)
T ss_dssp ---------TTTSHHHHHHHHHHHHCSCCSSEEEEECCCC------------------------CCCSCCHH
T ss_pred ---------ccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCcccccc-----CCCCCHHHHHHHH
Confidence 134799999999999998865 9999999765 555544455665 3555666777665
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-18 Score=150.84 Aligned_cols=121 Identities=15% Similarity=0.072 Sum_probs=94.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ...+..+.+|++|+. +..
T Consensus 6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (248)
T 3op4_A 6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYL--GDNGKGMALNVTNPESIEAVLKAITDEFGG 83 (248)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--cccceEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999998765444333322 235778999998862 247
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
+|+||||||+.....+ .+++++.+++|+.|+.++++++.+ .+ .+||++||.+.+.
T Consensus 84 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~ 147 (248)
T 3op4_A 84 VDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTM 147 (248)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcC
Confidence 9999999997654332 234678899999999999998743 34 3999999976553
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=9.1e-19 Score=150.10 Aligned_cols=119 Identities=16% Similarity=0.110 Sum_probs=90.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVD 182 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD 182 (263)
.+|+++||||+|+||++++++|+++|++|++++|+.+...+...+. . ..+.++.+|++|+. +..+|
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 79 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLL-G-NAVIGIVADLAHHEDVDVAFAAAVEWGGLPE 79 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-G-GGEEEEECCTTSHHHHHHHHHHHHHHHCSCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-c-CCceEEECCCCCHHHHHHHHHHHHHhcCCCc
Confidence 4689999999999999999999999999999999765544433333 2 36889999998862 24699
Q ss_pred EEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc----CCeEEEEcCcceec
Q 024766 183 QIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYG 235 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~iV~vSS~~vyg 235 (263)
+||||||......+ .+++++.+++|+.|+.++++++... +.+||++||.+.+.
T Consensus 80 ~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~ 140 (235)
T 3l6e_A 80 LVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLSSAAQV 140 (235)
T ss_dssp EEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECCS
T ss_pred EEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHHhcC
Confidence 99999997544332 2346788999999999999987432 23999999976553
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-19 Score=153.73 Aligned_cols=124 Identities=19% Similarity=0.083 Sum_probs=94.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc------------cchhhhhhhc-CCCceEEEEccccccc-
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT------------GRKDNLVHHF-RNPRFELIRHDVVEPI- 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~------------~~~~~~~~~~-~~~~v~~~~~Dv~~~~- 177 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.. ...+...... ...++.++.+|++|+.
T Consensus 9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 88 (278)
T 3sx2_A 9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRES 88 (278)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence 3578899999999999999999999999999999998622 1111111111 2467899999998862
Q ss_pred -----------cCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCcceec
Q 024766 178 -----------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYG 235 (263)
Q Consensus 178 -----------~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~vyg 235 (263)
+..+|+||||||+.......+++++.+++|+.|+.++++++.. .+ .+||++||.+.+.
T Consensus 89 v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~ 163 (278)
T 3sx2_A 89 LSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLA 163 (278)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcC
Confidence 2479999999997654444556789999999999999998633 22 3899999976553
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=147.84 Aligned_cols=124 Identities=15% Similarity=0.037 Sum_probs=91.1
Q ss_pred ccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------cCCC
Q 024766 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEV 181 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~--------~~~i 181 (263)
....+++|+|+||||+|+||++++++|+++|++|++++|+.+...+...+. ...+.+..+|+.+.. ..++
T Consensus 8 ~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~i 85 (249)
T 3f9i_A 8 HMIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL--KDNYTIEVCNLANKEECSNLISKTSNL 85 (249)
T ss_dssp -CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CSSEEEEECCTTSHHHHHHHHHTCSCC
T ss_pred ccccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--ccCccEEEcCCCCHHHHHHHHHhcCCC
Confidence 344678899999999999999999999999999999999755444333332 346888899998752 2469
Q ss_pred cEEEEccCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 182 DQIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
|+||||||...... ..+++++.+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 86 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 148 (249)
T 3f9i_A 86 DILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIA 148 (249)
T ss_dssp SEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhcc
Confidence 99999999755322 345688999999999999988763 233 3999999987764
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=149.45 Aligned_cols=123 Identities=13% Similarity=0.072 Sum_probs=95.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh---cCCCceEEEEccccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~Dv~~~~------------ 177 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ....++..+.+|++|+.
T Consensus 5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (265)
T 3lf2_A 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT 84 (265)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999765544333332 23446899999998862
Q ss_pred cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vyg 235 (263)
+..+|+||||||......+. +++++.+++|+.|+.++++++.. .+. +||++||...+.
T Consensus 85 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 151 (265)
T 3lf2_A 85 LGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQ 151 (265)
T ss_dssp HCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTS
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCC
Confidence 34799999999976543332 24678899999999999998743 233 899999976653
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-18 Score=150.75 Aligned_cols=122 Identities=19% Similarity=0.110 Sum_probs=95.9
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc-----------
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI----------- 177 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~----------- 177 (263)
...+++|+++||||+|+||++++++|+++|++|++++++.....+.+.+.+ ...++.++.+|++|+.
T Consensus 13 ~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 92 (270)
T 3is3_A 13 PGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVA 92 (270)
T ss_dssp TTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999998876554433333222 3567899999998862
Q ss_pred -cCCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcc
Q 024766 178 -LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSE 232 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~ 232 (263)
+..+|+||||||......+ .+++++.+++|+.|+.++++++.+. +.+||++||..
T Consensus 93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~ 155 (270)
T 3is3_A 93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT 155 (270)
T ss_dssp HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence 2479999999998654432 2346788999999999999998765 23999999975
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=150.34 Aligned_cols=124 Identities=16% Similarity=0.119 Sum_probs=98.0
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc-----------cC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI-----------LL 179 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~-----------~~ 179 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++..+.+|+++.. ..
T Consensus 29 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g 108 (275)
T 4imr_A 29 FGLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIA 108 (275)
T ss_dssp HCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhC
Confidence 35789999999999999999999999999999999998766554443332 3567899999998862 14
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
.+|+||||||........ +++++.+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~ 173 (275)
T 4imr_A 109 PVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLR 173 (275)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC
Confidence 799999999975544322 3467789999999999999873 334 3999999987664
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2e-18 Score=149.46 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++.++.+|++++. +.++
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57889999999999999999999999999999998755433322222 346888999998762 2379
Q ss_pred cEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHH----HHHcCC-eEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGL----AKRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~----a~~~~~-~iV~vSS~~vyg 235 (263)
|+||||||......+ .+++++.+++|+.|+.++++. +++.+. +||++||.+.+.
T Consensus 81 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 143 (254)
T 1hdc_A 81 DGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLM 143 (254)
T ss_dssp CEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc
Confidence 999999997543322 234678899999999866655 444454 999999987664
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=152.17 Aligned_cols=124 Identities=21% Similarity=0.142 Sum_probs=93.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc------------hhhh---hhhc--CCCceEEEEcccc
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR------------KDNL---VHHF--RNPRFELIRHDVV 174 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~------------~~~~---~~~~--~~~~v~~~~~Dv~ 174 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.... .+.+ .+.+ ...++.++.+|++
T Consensus 7 ~~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 86 (286)
T 3uve_A 7 GRVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVR 86 (286)
T ss_dssp CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCC
Confidence 357889999999999999999999999999999999863211 1111 1111 2467899999998
Q ss_pred ccc------------cCCCcEEEEccCCCCCCC-C----CCCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCc
Q 024766 175 EPI------------LLEVDQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTS 231 (263)
Q Consensus 175 ~~~------------~~~iD~Vi~~Ag~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~ 231 (263)
|+. +..+|+||||||+..... . .+++++.+++|+.|+.++++++.. .+ .+||++||.
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 166 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV 166 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence 862 347999999999765433 2 234678899999999999998643 22 389999998
Q ss_pred ceec
Q 024766 232 EVYG 235 (263)
Q Consensus 232 ~vyg 235 (263)
..+.
T Consensus 167 ~~~~ 170 (286)
T 3uve_A 167 GGLK 170 (286)
T ss_dssp GGTS
T ss_pred hhcc
Confidence 7663
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.5e-19 Score=152.40 Aligned_cols=121 Identities=18% Similarity=0.223 Sum_probs=96.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++..+.+|++|+. +..
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF--GPRVHALRSDIADLNEIAVLGAAAGQTLGA 82 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCcceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999999999999999765443333222 357889999998862 347
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
+|+||||||......+. +++++.+++|+.|+.++++++... +.+||++||.+.+.
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~ 144 (255)
T 4eso_A 83 IDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG 144 (255)
T ss_dssp EEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC
Confidence 99999999986544322 346788999999999999998764 23899999987664
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=150.68 Aligned_cols=121 Identities=14% Similarity=0.072 Sum_probs=91.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEE-ecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-DNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l-~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
++|+++||||+|+||++++++|+++|++|+++ +|+.+...+...+.. ...++.++.+|++|+. +..
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGR 82 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999999987 555443333222222 2457899999998862 246
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
+|+||||||......+. +++++.+++|+.|+.++++++. +.+. +||++||.+.+.
T Consensus 83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~ 146 (258)
T 3oid_A 83 LDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIR 146 (258)
T ss_dssp CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTS
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCC
Confidence 89999999975543322 2467789999999999998873 3344 999999987663
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=151.38 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=95.3
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------ 177 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.....+.+.+.+ ...++.++.+|++|+.
T Consensus 24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~ 103 (269)
T 4dmm_A 24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIER 103 (269)
T ss_dssp CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 34788999999999999999999999999999999985444333332222 3457889999998862
Q ss_pred cCCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
+..+|+||||||....... .+++++.+++|+.|+.++++++. +.+ .+||++||.+.+.
T Consensus 104 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 170 (269)
T 4dmm_A 104 WGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEM 170 (269)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHH
T ss_pred cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC
Confidence 2479999999997654332 23467889999999999999863 333 4999999976553
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=148.11 Aligned_cols=124 Identities=17% Similarity=0.128 Sum_probs=90.8
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------c
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~ 178 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEF 84 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 34678999999999999999999999999999999997655444333322 3567889999998862 2
Q ss_pred CCCcEEEEccCCCCCC---C----CCCCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPV---H----YKYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~---~----~~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
.++|+||||||..... . ..+++++.+++|+.|+.++++++ ++.+. +||++||...|.
T Consensus 85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 153 (253)
T 3qiv_A 85 GGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAWL 153 (253)
T ss_dssp SCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-----
T ss_pred CCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCccccC
Confidence 4799999999974211 1 12346788999999988877765 33344 899999988773
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=147.38 Aligned_cols=120 Identities=17% Similarity=0.121 Sum_probs=91.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------cCCCcEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEVDQI 184 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~--------~~~iD~V 184 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+ ...++++.+|++++. +..+|+|
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 80 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE---CPGIEPVCVDLGDWDATEKALGGIGPVDLL 80 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---STTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---ccCCCcEEecCCCHHHHHHHHHHcCCCCEE
Confidence 35788999999999999999999999999999999875443322222 134567799998762 2358999
Q ss_pred EEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc----C--CeEEEEcCcceec
Q 024766 185 YHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYG 235 (263)
Q Consensus 185 i~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~--~~iV~vSS~~vyg 235 (263)
|||||......+. +++++.+++|+.|+.++++++.+. + .+||++||..+|.
T Consensus 81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~ 141 (244)
T 1cyd_A 81 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV 141 (244)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS
T ss_pred EECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcC
Confidence 9999975433322 246778999999999999887543 3 4999999988775
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-18 Score=148.73 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=94.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +.
T Consensus 8 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 87 (255)
T 1fmc_A 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 3678899999999999999999999999999999997554333222221 2457888999998762 23
Q ss_pred CCcEEEEccCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
++|+||||||......++ +++++.+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 88 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~ 151 (255)
T 1fmc_A 88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN 151 (255)
T ss_dssp SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC
T ss_pred CCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcC
Confidence 799999999976543332 2467889999999999998874 3444 999999988775
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=150.97 Aligned_cols=118 Identities=16% Similarity=0.154 Sum_probs=91.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+ . ....+..+.+|++|.. +..
T Consensus 13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~----~-~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 87 (266)
T 3p19_A 13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKA----L-NLPNTLCAQVDVTDKYTFDTAITRAEKIYGP 87 (266)
T ss_dssp --CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHT----T-CCTTEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH----h-hcCCceEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 4678999999999999999999999999999999986443222 1 2347889999998862 247
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
+|+||||||......+. +++++.+++|+.|+.++++++. +.+ .+||++||.+.+.
T Consensus 88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~ 151 (266)
T 3p19_A 88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKK 151 (266)
T ss_dssp EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCC
Confidence 99999999976544332 2466789999999999877753 344 4999999987664
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-18 Score=148.55 Aligned_cols=121 Identities=20% Similarity=0.244 Sum_probs=95.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++.++.+|++++. +.+
T Consensus 9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 86 (265)
T 2o23_A 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKGKFGR 86 (265)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHHCCC
Confidence 367899999999999999999999999999999999876554433333 357889999998762 237
Q ss_pred CcEEEEccCCCCCCCC----------CCCHHHHHHHHHHHHHHHHHHHHHc----------CC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHY----------KYNPVKTIKTNVMGTLNMLGLAKRV----------GA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----------~~~~~~~~~~Nv~gt~~ll~~a~~~----------~~-~iV~vSS~~vyg 235 (263)
+|+||||||....... .+++++.+++|+.|+.++++++.+. +. +||++||...+.
T Consensus 87 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 162 (265)
T 2o23_A 87 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE 162 (265)
T ss_dssp CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred CCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcC
Confidence 9999999997544321 2246788999999999999987653 43 899999987764
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-18 Score=150.49 Aligned_cols=124 Identities=14% Similarity=-0.027 Sum_probs=95.4
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------c
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~ 178 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|+++.. +
T Consensus 25 ~~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 104 (262)
T 3rkr_A 25 SSLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAH 104 (262)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 45788999999999999999999999999999999997665444333322 3467899999998762 2
Q ss_pred CCCcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
..+|+||||||.... ... .+++++.+++|+.|+.++++++.. .+ .+||++||.+.+.
T Consensus 105 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 171 (262)
T 3rkr_A 105 GRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKN 171 (262)
T ss_dssp SCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSC
T ss_pred CCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcC
Confidence 469999999997322 221 234678899999999999988643 33 4999999987653
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-19 Score=150.82 Aligned_cols=123 Identities=17% Similarity=0.222 Sum_probs=98.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccc-c-----ccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE-P-----ILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~-~-----~~~~iD~Vi~~Ag~ 190 (263)
|+|+||||+|+||++++++|+++|++|++++|+.+...+ ...++++.+|+.| . .+.++|+||||||.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~ 73 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ-------YNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGS 73 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC-------CTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCC
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh-------cCCceEEEecccCCHHHHHHHHcCCCEEEECCcC
Confidence 479999999999999999999999999999997654322 1578999999998 4 45679999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
... ..+++|+.|+.++++++++.+. +||++||.++++.. +..| .+..+...|+.+|
T Consensus 74 ~~~--------~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~---~~~e------~~~~~~~~Y~~sK 130 (219)
T 3dqp_A 74 GGK--------SLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPE---KWIG------AGFDALKDYYIAK 130 (219)
T ss_dssp TTS--------SCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGG---GCCS------HHHHHTHHHHHHH
T ss_pred CCC--------CcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCC---cccc------cccccccHHHHHH
Confidence 542 1456899999999999999886 99999998877632 3333 2445667787765
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=152.41 Aligned_cols=122 Identities=12% Similarity=0.057 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh---c-CCCceEEEEccccccc------------
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH---F-RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~---~-~~~~v~~~~~Dv~~~~------------ 177 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. . ...++.++.+|++|+.
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK 83 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999755443322222 1 2346889999998762
Q ss_pred cCCCcEEEEccCCCCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHc----CCeEEEEcCcce-ec
Q 024766 178 LLEVDQIYHLACPASPVH--------YKYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEV-YG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~iV~vSS~~v-yg 235 (263)
+.++|+||||||...... ..+++++.+++|+.|+.++++++.+. +.+||++||.+. +.
T Consensus 84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~ 154 (278)
T 1spx_A 84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLH 154 (278)
T ss_dssp HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCTTSSSS
T ss_pred cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEeccccccc
Confidence 237999999999754322 22346778999999999999987543 469999999876 53
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.3e-18 Score=147.15 Aligned_cols=123 Identities=15% Similarity=0.063 Sum_probs=93.4
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccc--ccc-----------
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDV--VEP----------- 176 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv--~~~----------- 176 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ....+.++.+|+ ++.
T Consensus 8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 87 (252)
T 3f1l_A 8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIA 87 (252)
T ss_dssp TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHH
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999997655443333221 234678889998 654
Q ss_pred -ccCCCcEEEEccCCCCC-CCCC----CCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCccee
Q 024766 177 -ILLEVDQIYHLACPASP-VHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVY 234 (263)
Q Consensus 177 -~~~~iD~Vi~~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vy 234 (263)
.+..+|+||||||.... .... +++++.+++|+.|+.++++++ ++.+ .+||++||...+
T Consensus 88 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~ 156 (252)
T 3f1l_A 88 VNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGR 156 (252)
T ss_dssp HHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGT
T ss_pred HhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhc
Confidence 22479999999997432 2222 235778999999999999987 3344 499999997655
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=150.02 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=91.3
Q ss_pred CccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----------
Q 024766 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI----------- 177 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~----------- 177 (263)
+....+++|+|+||||+|+||++++++|+++|++|++++|+.+.. ...+..+.+|++|+.
T Consensus 7 ~~~~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (269)
T 3vtz_A 7 HHMEEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD---------VNVSDHFKIDVTNEEEVKEAVEKTTK 77 (269)
T ss_dssp ---CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C---------TTSSEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc---------cCceeEEEecCCCHHHHHHHHHHHHH
Confidence 445578899999999999999999999999999999999875443 124667889998862
Q ss_pred -cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCcceec
Q 024766 178 -LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYG 235 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vyg 235 (263)
+..+|+||||||........ +++++.+++|+.|+.++++++.. .+. +||++||...|.
T Consensus 78 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 145 (269)
T 3vtz_A 78 KYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYA 145 (269)
T ss_dssp HHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhcc
Confidence 24799999999976544332 23567889999999999988643 343 999999988775
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-18 Score=149.33 Aligned_cols=123 Identities=15% Similarity=0.100 Sum_probs=95.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------c-
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L- 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~- 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++..+.+|++|+. +
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 97 (273)
T 1ae1_A 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD 97 (273)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999999997654433322221 2457889999998762 2
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
..+|+||||||........ ++++..+++|+.|+.++++++. +.+ .+||++||.+.+.
T Consensus 98 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~ 163 (273)
T 1ae1_A 98 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS 163 (273)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcC
Confidence 6799999999975443322 2467788999999999999873 334 4999999988775
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=150.97 Aligned_cols=121 Identities=10% Similarity=0.025 Sum_probs=90.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~ 179 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++.++.+|++|+. +.
T Consensus 23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 100 (266)
T 3grp_A 23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL--GKDVFVFSANLSDRKSIKQLAEVAEREME 100 (266)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CSSEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--CCceEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 4578999999999999999999999999999999998765544433322 457889999998862 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vy 234 (263)
.+|+||||||......+. +++++.+++|+.|+.++++++. +.+. +||++||...+
T Consensus 101 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~ 164 (266)
T 3grp_A 101 GIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGV 164 (266)
T ss_dssp SCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC---
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHc
Confidence 799999999976543332 3467889999999888877653 3444 99999997655
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=150.16 Aligned_cols=123 Identities=13% Similarity=0.130 Sum_probs=95.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +.
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 87 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYG 87 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4788999999999999999999999999999999997655444333322 3567899999998862 34
Q ss_pred CCcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHH----HcCCeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~iV~vSS~~vyg 235 (263)
.+|+||||||.... ..+ .+++++.+++|+.|+.++++++. +.+.+||++||...+.
T Consensus 88 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 152 (264)
T 3ucx_A 88 RVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESKGAVVNVNSMVVRH 152 (264)
T ss_dssp CCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHTCEEEEECCGGGGC
T ss_pred CCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEECcchhcc
Confidence 79999999987432 222 23467889999999999998863 3345999999987654
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=152.88 Aligned_cols=125 Identities=18% Similarity=0.052 Sum_probs=94.5
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc------------cchhhhhhhc-CCCceEEEEccccccc
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT------------GRKDNLVHHF-RNPRFELIRHDVVEPI 177 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~------------~~~~~~~~~~-~~~~v~~~~~Dv~~~~ 177 (263)
...+++|+++||||+|+||++++++|+++|++|++++|+.. ...+...+.. ...++.++.+|++|+.
T Consensus 23 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~ 102 (299)
T 3t7c_A 23 AGKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFD 102 (299)
T ss_dssp CCTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHH
T ss_pred ccccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHH
Confidence 34578999999999999999999999999999999998732 1111111111 3567899999998862
Q ss_pred ------------cCCCcEEEEccCCCCCCC-C----CCCHHHHHHHHHHHHHHHHHHHHHc----C--CeEEEEcCccee
Q 024766 178 ------------LLEVDQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVY 234 (263)
Q Consensus 178 ------------~~~iD~Vi~~Ag~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~--~~iV~vSS~~vy 234 (263)
+..+|+||||||...... . .+++++.+++|+.|+.++++++... + .+||++||.+.+
T Consensus 103 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~ 182 (299)
T 3t7c_A 103 AMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGL 182 (299)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhc
Confidence 347999999999765433 2 2346788999999999999986432 2 399999998766
Q ss_pred c
Q 024766 235 G 235 (263)
Q Consensus 235 g 235 (263)
.
T Consensus 183 ~ 183 (299)
T 3t7c_A 183 R 183 (299)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=151.52 Aligned_cols=122 Identities=17% Similarity=0.127 Sum_probs=94.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +.
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 104 (283)
T 3v8b_A 25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFG 104 (283)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999999998665444444332 2457889999998862 34
Q ss_pred CCcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCccee
Q 024766 180 EVDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vy 234 (263)
.+|+||||||.... ... .+++++.+++|+.|+.++++++ ++.+. +||++||.+.+
T Consensus 105 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~ 169 (283)
T 3v8b_A 105 HLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGT 169 (283)
T ss_dssp CCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTT
T ss_pred CCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhc
Confidence 79999999997543 222 2246788999999999999987 44444 99999997654
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=149.44 Aligned_cols=123 Identities=16% Similarity=0.066 Sum_probs=94.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++..+.+|+.|.. +.
T Consensus 11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 90 (260)
T 2zat_A 11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHG 90 (260)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999999997654333322221 2456888999998752 24
Q ss_pred CCcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 180 EVDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
++|+||||||.... ..+ .+++++.+++|+.|+.++++++. +.+. +||++||.+.|.
T Consensus 91 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 156 (260)
T 2zat_A 91 GVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYH 156 (260)
T ss_dssp CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcC
Confidence 79999999997432 111 22467889999999999988864 4444 999999988775
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=152.55 Aligned_cols=123 Identities=15% Similarity=0.082 Sum_probs=96.1
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------c
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~ 178 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +
T Consensus 22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 101 (271)
T 4ibo_A 22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQG 101 (271)
T ss_dssp GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence 45789999999999999999999999999999999987665444433332 3467889999998862 2
Q ss_pred CCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vy 234 (263)
.++|+||||||+.....+ .+++++.+++|+.|+.++++++.+ .+. +||++||...+
T Consensus 102 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~ 166 (271)
T 4ibo_A 102 IDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSE 166 (271)
T ss_dssp CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred CCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhC
Confidence 469999999997654432 234678899999999999887643 343 99999997654
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-18 Score=150.26 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=93.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc-------------cchhhhhhh-cCCCceEEEEccccccc-
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT-------------GRKDNLVHH-FRNPRFELIRHDVVEPI- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~-------------~~~~~~~~~-~~~~~v~~~~~Dv~~~~- 177 (263)
.+++|+++||||+|+||++++++|+++|++|++++|... ...+..... ....++.++.+|++|..
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 87 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR 87 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 478899999999999999999999999999999998421 111111111 13567899999998862
Q ss_pred -----------cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCcceec
Q 024766 178 -----------LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVYG 235 (263)
Q Consensus 178 -----------~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vyg 235 (263)
+..+|+||||||......+. +++++.+++|+.|+.++++++. +.+ .+||++||.+.+.
T Consensus 88 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~ 166 (277)
T 3tsc_A 88 LRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMK 166 (277)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCC
Confidence 35699999999986554332 3467889999999999998853 333 3999999987653
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.76 E-value=4e-18 Score=148.32 Aligned_cols=115 Identities=19% Similarity=0.240 Sum_probs=92.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+||||++++++|+++|++|++++|+.+... ...+.++.+|++|+. +.+
T Consensus 25 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~--------~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 96 (260)
T 3un1_A 25 RNQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA--------DPDIHTVAGDISKPETADRIVREGIERFGR 96 (260)
T ss_dssp HTTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS--------STTEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc--------cCceEEEEccCCCHHHHHHHHHHHHHHCCC
Confidence 467899999999999999999999999999999998755422 236889999998862 247
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
+|+||||||......+. +++++.+++|+.|+.++++++ ++.+. +||++||..++.
T Consensus 97 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 160 (260)
T 3un1_A 97 IDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQ 160 (260)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTS
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcc
Confidence 99999999976544332 346788999999999999987 44454 999999987654
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-18 Score=150.31 Aligned_cols=125 Identities=16% Similarity=0.095 Sum_probs=93.3
Q ss_pred CCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh--cCCCceEEEEccccccc--------
Q 024766 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEPI-------- 177 (263)
Q Consensus 108 ~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~Dv~~~~-------- 177 (263)
.+....+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ....++..+.+|++++.
T Consensus 13 ~~~~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~ 92 (267)
T 1vl8_A 13 MKEVFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEA 92 (267)
T ss_dssp ----CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH
Confidence 34455678999999999999999999999999999999999755443322222 01456888999998862
Q ss_pred ----cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcc
Q 024766 178 ----LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSE 232 (263)
Q Consensus 178 ----~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~ 232 (263)
+.++|+||||||......+. +++++.+++|+.|+.++++++. +.+ .+||++||.+
T Consensus 93 ~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~ 160 (267)
T 1vl8_A 93 VKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLT 160 (267)
T ss_dssp HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGG
T ss_pred HHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcc
Confidence 24799999999976543322 2457789999999999988874 333 4999999976
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=152.67 Aligned_cols=123 Identities=17% Similarity=0.090 Sum_probs=96.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|.. +.
T Consensus 28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 107 (301)
T 3tjr_A 28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLG 107 (301)
T ss_dssp CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence 4788999999999999999999999999999999998665544433332 3567899999998862 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vyg 235 (263)
.+|+||||||......+. +++++.+++|+.|+.++++++. +.+ .+||++||.+.+.
T Consensus 108 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~ 173 (301)
T 3tjr_A 108 GVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLV 173 (301)
T ss_dssp SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcC
Confidence 799999999976543322 2467889999999999999863 333 3999999987653
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-18 Score=146.81 Aligned_cols=122 Identities=15% Similarity=0.072 Sum_probs=93.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +.+
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 84 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGG 84 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 578899999999999999999999999999999987554433222221 2457889999998862 247
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vyg 235 (263)
+|+||||||......+. +++++.+++|+.|+.++++++.. .+.+||++||.+.+.
T Consensus 85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 147 (247)
T 2jah_A 85 LDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSKGTVVQMSSIAGRV 147 (247)
T ss_dssp CSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTC
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEccHHhcC
Confidence 99999999975443322 24677899999999999988743 236999999986653
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=145.94 Aligned_cols=114 Identities=16% Similarity=0.123 Sum_probs=93.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~ 186 (263)
+++|+|+||||+|+||++++++|+++|+ +|++++|+.+...+.. ...+.++.+|++|+ .+.++|+|||
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~d~vi~ 90 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGHDVGFC 90 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSCSEEEE
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccc-----cCCceEEecCcCCHHHHHHHhcCCCEEEE
Confidence 4578999999999999999999999999 9999999865443221 13577889999875 3457999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceec
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg 235 (263)
|||.... ..+++..+++|+.++.++++++++.+. +||++||.++|+
T Consensus 91 ~ag~~~~---~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~ 137 (242)
T 2bka_A 91 CLGTTRG---KAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADK 137 (242)
T ss_dssp CCCCCHH---HHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT
T ss_pred CCCcccc---cCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCC
Confidence 9985322 124577899999999999999998886 999999999987
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=145.53 Aligned_cols=130 Identities=14% Similarity=0.061 Sum_probs=97.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc---ccCCCcEEEEccCCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP---ILLEVDQIYHLACPASP 193 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~---~~~~iD~Vi~~Ag~~~~ 193 (263)
|+|+||||+|+||++++++|+++|++|++++|+.+...+ . ....++++.+|+.|. .+.++|+||||||....
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~----~-~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~ 75 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAAD----R-LGATVATLVKEPLVLTEADLDSVDAVVDALSVPWG 75 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH----H-TCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTT
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccccc----c-cCCCceEEecccccccHhhcccCCEEEECCccCCC
Confidence 479999999999999999999999999999987543321 1 235788999999886 46789999999987521
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCccee-cCCCCC--CcCCCCCCCCCCCCcCccccccC
Q 024766 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY-GDPLEH--PQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vy-g~~~~~--~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.. ...+|+.++.++++++++.+.+||++||.+++ +..... +.+|.. ...+.+.|+.+|
T Consensus 76 ~~-------~~~~n~~~~~~l~~a~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~-----~~~~~~~y~~sK 136 (224)
T 3h2s_A 76 SG-------RGYLHLDFATHLVSLLRNSDTLAVFILGSASLAMPGADHPMILDFPE-----SAASQPWYDGAL 136 (224)
T ss_dssp SS-------CTHHHHHHHHHHHHTCTTCCCEEEEECCGGGSBCTTCSSCGGGGCCG-----GGGGSTTHHHHH
T ss_pred cc-------hhhHHHHHHHHHHHHHHHcCCcEEEEecceeeccCCCCccccccCCC-----CCccchhhHHHH
Confidence 11 13689999999999999888899999997554 433322 333332 223466787765
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=151.12 Aligned_cols=123 Identities=18% Similarity=0.084 Sum_probs=93.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc------------cchhhhhhhc--CCCceEEEEccccccc-
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT------------GRKDNLVHHF--RNPRFELIRHDVVEPI- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~------------~~~~~~~~~~--~~~~v~~~~~Dv~~~~- 177 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.. ...+...+.+ ...++..+.+|++|+.
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~ 91 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA 91 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence 478899999999999999999999999999999998421 1111111111 3567889999998862
Q ss_pred -----------cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCcceec
Q 024766 178 -----------LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVYG 235 (263)
Q Consensus 178 -----------~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vyg 235 (263)
+..+|+||||||......+. +++++.+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 170 (280)
T 3pgx_A 92 LRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLK 170 (280)
T ss_dssp HHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTS
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhcc
Confidence 34799999999986544322 3467789999999999999873 333 3899999987653
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-18 Score=148.75 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=94.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++++.....+.....+ ...++..+.+|++|+. +
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEAL 107 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4788999999999999999999999999999999876544333333222 3567889999998862 2
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcce
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEV 233 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~v 233 (263)
..+|+||||||......+. +++++.+++|+.|+.++++++.+. +.+||++||...
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~ 169 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLA 169 (271)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGG
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhh
Confidence 4799999999976544322 346788999999999999998764 349999999643
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=149.47 Aligned_cols=122 Identities=11% Similarity=0.024 Sum_probs=93.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc-chhhhhhhcC--CCceEEEEccccccc------------c
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG-RKDNLVHHFR--NPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~-~~~~~~~~~~--~~~v~~~~~Dv~~~~------------~ 178 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+. ..+...+... ..++.++.+|++|+. +
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 81 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 467899999999999999999999999999999987654 3322222211 356888999998862 2
Q ss_pred CCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
.++|+||||||......+ .+++++.+++|+.|+.++++++. +.+ .+||++||.+.+.
T Consensus 82 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 147 (260)
T 1x1t_A 82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLV 147 (260)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCc
Confidence 479999999997543332 23467889999999999988874 334 4999999987664
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-18 Score=152.92 Aligned_cols=122 Identities=14% Similarity=0.040 Sum_probs=95.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++++. +.
T Consensus 5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 84 (280)
T 3tox_A 5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFG 84 (280)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 3678999999999999999999999999999999987665444433332 2467889999998862 24
Q ss_pred CCcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCccee
Q 024766 180 EVDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vy 234 (263)
.+|+||||||.... ... .+++++.+++|+.|+.++++++.. .+. +||++||...+
T Consensus 85 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 149 (280)
T 3tox_A 85 GLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGH 149 (280)
T ss_dssp CCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTT
T ss_pred CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhC
Confidence 79999999997533 222 234678899999999999998643 333 99999998766
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-18 Score=148.87 Aligned_cols=122 Identities=16% Similarity=0.079 Sum_probs=94.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +.
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 98 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG 98 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999999997654433222221 2456889999998762 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc------C-CeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV------G-AKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~------~-~~iV~vSS~~vy 234 (263)
++|+||||||......+. +++++.+++|+.|+.++++++.+. + .+||++||.+.+
T Consensus 99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~ 164 (277)
T 2rhc_B 99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK 164 (277)
T ss_dssp SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGT
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccc
Confidence 699999999975443322 246788999999999999987654 4 399999997654
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-18 Score=149.04 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=94.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.....++.++.+|++|+. +.+
T Consensus 26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 105 (276)
T 2b4q_A 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSAR 105 (276)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSC
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 46789999999999999999999999999999999876544333333322236888899998862 247
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcC-----CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-----AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-----~~iV~vSS~~vyg 235 (263)
+|+||||||......+ .+++++.+++|+.|+.++++++. +.+ .+||++||.+.+.
T Consensus 106 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~ 173 (276)
T 2b4q_A 106 LDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGIS 173 (276)
T ss_dssp CSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTC
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcC
Confidence 9999999997554322 23467889999999999888763 222 4899999987764
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-18 Score=155.48 Aligned_cols=123 Identities=20% Similarity=0.114 Sum_probs=95.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~------------ 177 (263)
.+++|+|+||||+||||.+++++|+++|++|++++|+.++..+...... ....+.++.+|+++..
T Consensus 5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 84 (319)
T 3ioy_A 5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEAR 84 (319)
T ss_dssp CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHh
Confidence 3578899999999999999999999999999999998665444333321 1237899999998862
Q ss_pred cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc-----------CCeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV-----------GAKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~-----------~~~iV~vSS~~vyg 235 (263)
+..+|+||||||+.....+. +++++.+++|+.|+.++++++... +.+||++||.+.+.
T Consensus 85 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~ 157 (319)
T 3ioy_A 85 FGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFL 157 (319)
T ss_dssp TCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTC
T ss_pred CCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEeccccccc
Confidence 24689999999975543322 346788999999999998886432 34899999987664
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-18 Score=150.06 Aligned_cols=123 Identities=15% Similarity=0.127 Sum_probs=93.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~------------ 177 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++..+.+|++|+.
T Consensus 10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 89 (267)
T 1iy8_A 10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 89 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999997654433222221 2457889999998862
Q ss_pred cCCCcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vyg 235 (263)
+..+|+||||||.... ..+ .+++++.+++|+.|+.++++++ ++.+ .+||++||...+.
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 157 (267)
T 1iy8_A 90 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIR 157 (267)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS
T ss_pred cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcc
Confidence 2469999999997543 222 2346788999999999877665 3444 4999999986653
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-18 Score=148.12 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=94.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.....++.++.+|++|+. +.+
T Consensus 13 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 92 (278)
T 2bgk_A 13 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK 92 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999999875443332222212237899999998762 237
Q ss_pred CcEEEEccCCCCCC--CCC----CCHHHHHHHHHHHHHHHHHHHHHc----CC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPV--HYK----YNPVKTIKTNVMGTLNMLGLAKRV----GA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~--~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~~-~iV~vSS~~vyg 235 (263)
+|+||||||..... .+. +++++.+++|+.|+.++++++.+. +. +||++||..+|.
T Consensus 93 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~ 158 (278)
T 2bgk_A 93 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFT 158 (278)
T ss_dssp CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTC
T ss_pred CCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccC
Confidence 99999999975421 111 346778999999999999987653 33 999999998876
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-18 Score=146.05 Aligned_cols=116 Identities=21% Similarity=0.221 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+. .+...+. . . .++.+|++|+. +.++
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~-~--~-~~~~~D~~~~~~~~~~~~~~~~~~g~i 78 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAI-G--G-AFFQVDLEDERERVRFVEEAAYALGRV 78 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHH-T--C-EEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHh-h--C-CEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 568899999999999999999999999999999998765 3332222 2 3 78899998752 2479
Q ss_pred cEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCccee
Q 024766 182 DQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVY 234 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vy 234 (263)
|+||||||......+.+ ++++.+++|+.|+.++++++.+ .+. +||++||.+.+
T Consensus 79 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~ 140 (256)
T 2d1y_A 79 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGL 140 (256)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcccccc
Confidence 99999999765433322 3578899999999999888743 344 99999998654
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-18 Score=145.63 Aligned_cols=118 Identities=16% Similarity=0.136 Sum_probs=92.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCe-EEEEecCCcc-chhhhhhhcCCCceEEEEcccccc-c------------c
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEP-I------------L 178 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~-V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~Dv~~~-~------------~ 178 (263)
+++|+++||||+|+||++++++|+++|++ |++++|+... ..+.+.......++.++.+|++|+ . +
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL 82 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence 56889999999999999999999999996 9999987532 222222222345788999999875 2 2
Q ss_pred CCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--------CCeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV--------GAKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~--------~~~iV~vSS~~vyg 235 (263)
.++|+||||||.. ..+++++.+++|+.|+.++++++.+. +.+||++||.+.+.
T Consensus 83 g~id~lv~~Ag~~----~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 143 (254)
T 1sby_A 83 KTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN 143 (254)
T ss_dssp SCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS
T ss_pred CCCCEEEECCccC----CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhcc
Confidence 3799999999864 24678999999999999999987532 23799999987764
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=151.80 Aligned_cols=123 Identities=15% Similarity=0.144 Sum_probs=88.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+.....+ ...++.++.+|++|+. +
T Consensus 26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 105 (280)
T 4da9_A 26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF 105 (280)
T ss_dssp CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999975443333222221 3567899999998862 2
Q ss_pred CCCcEEEEccCCCC--CCCC----CCCHHHHHHHHHHHHHHHHHHHHHc--------CCeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPAS--PVHY----KYNPVKTIKTNVMGTLNMLGLAKRV--------GAKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~--~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~--------~~~iV~vSS~~vyg 235 (263)
..+|+||||||... ...+ .+++++.+++|+.|+.++++++.+. +.+||++||.+.+.
T Consensus 106 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~ 176 (280)
T 4da9_A 106 GRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVM 176 (280)
T ss_dssp SCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC----
T ss_pred CCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhcc
Confidence 47999999999732 2222 2346788899999999998886432 23899999976653
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=150.19 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=92.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEec-CCccchhhhhhhc--CCCceEEEEcccccc----c---------
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN-FFTGRKDNLVHHF--RNPRFELIRHDVVEP----I--------- 177 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r-~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~----~--------- 177 (263)
+++|+++||||+|+||++++++|+++|++|++++| +.+...+...+.. ...++.++.+|+++. .
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 88 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCS 88 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHH
Confidence 56789999999999999999999999999999998 5443332222221 145788999999876 2
Q ss_pred ---cCCCcEEEEccCCCCCCCCC---------------CCHHHHHHHHHHHHHHHHHHHHHc---C-------CeEEEEc
Q 024766 178 ---LLEVDQIYHLACPASPVHYK---------------YNPVKTIKTNVMGTLNMLGLAKRV---G-------AKFLLTS 229 (263)
Q Consensus 178 ---~~~iD~Vi~~Ag~~~~~~~~---------------~~~~~~~~~Nv~gt~~ll~~a~~~---~-------~~iV~vS 229 (263)
+..+|+||||||......+. +++++.+++|+.|+.++++++.+. + .+||++|
T Consensus 89 ~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~is 168 (276)
T 1mxh_A 89 FRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLC 168 (276)
T ss_dssp HHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEEC
T ss_pred HHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEC
Confidence 23699999999975433222 345678999999999999998763 2 5899999
Q ss_pred Ccceec
Q 024766 230 TSEVYG 235 (263)
Q Consensus 230 S~~vyg 235 (263)
|...+.
T Consensus 169 S~~~~~ 174 (276)
T 1mxh_A 169 DAMTDL 174 (276)
T ss_dssp CGGGGS
T ss_pred chhhcC
Confidence 987764
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.1e-18 Score=148.47 Aligned_cols=122 Identities=20% Similarity=0.103 Sum_probs=95.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +.
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g 108 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELG 108 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 5788999999999999999999999999999999998665544433332 3457889999998862 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~vy 234 (263)
++|+||||||......+. +++++.+++|+.|+.++++++.+ .+ .+||++||.+.+
T Consensus 109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~ 173 (276)
T 3r1i_A 109 GIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGH 173 (276)
T ss_dssp CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhc
Confidence 799999999986554432 24677789999999999988643 22 489999997655
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-18 Score=148.93 Aligned_cols=122 Identities=13% Similarity=0.091 Sum_probs=91.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc----CCCceEEEEccccccc-----------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF----RNPRFELIRHDVVEPI----------- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~Dv~~~~----------- 177 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|..
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 83 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQ 83 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHH
Confidence 4678899999999999999999999999999999997655443333221 2267889999998862
Q ss_pred -cCCCcEEEEccCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCccee
Q 024766 178 -LLEVDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVY 234 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vy 234 (263)
+..+|+||||||.......+ +++++.+++|+.|+.++++++. +.+ .+||++||.+.+
T Consensus 84 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 149 (250)
T 3nyw_A 84 KYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAK 149 (250)
T ss_dssp HHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC----
T ss_pred hcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhc
Confidence 24699999999986544332 2457889999999999999873 334 399999997654
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.9e-18 Score=151.52 Aligned_cols=121 Identities=16% Similarity=0.145 Sum_probs=92.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+.+|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++.++.+|++|+. +..
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 102 (272)
T 4dyv_A 25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI--GDDALCVPTDVTDPDSVRALFTATVEKFGR 102 (272)
T ss_dssp ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--TSCCEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--CCCeEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999999999765544443333 357889999998862 247
Q ss_pred CcEEEEccCCCCCC-CC----CCCHHHHHHHHHHHHHHHHHHHH----HcC---CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPV-HY----KYNPVKTIKTNVMGTLNMLGLAK----RVG---AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~-~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~---~~iV~vSS~~vyg 235 (263)
+|+||||||..... .. .+++++.+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 103 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~ 169 (272)
T 4dyv_A 103 VDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATS 169 (272)
T ss_dssp CCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTS
T ss_pred CCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcC
Confidence 99999999975432 22 23467889999999999888763 332 3999999986653
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-18 Score=148.18 Aligned_cols=125 Identities=20% Similarity=0.091 Sum_probs=99.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPV 194 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~ 194 (263)
.+|+|+|||| ||||++|+++|+++|++|++++|+....... ....++++.+|+.|..+.++|+|||+|+.....
T Consensus 4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-----~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~ 77 (286)
T 3ius_A 4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAI-----RASGAEPLLWPGEEPSLDGVTHLLISTAPDSGG 77 (286)
T ss_dssp -CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHH-----HHTTEEEEESSSSCCCCTTCCEEEECCCCBTTB
T ss_pred CcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhH-----hhCCCeEEEecccccccCCCCEEEECCCccccc
Confidence 3579999998 9999999999999999999999975433221 124688999999886677899999999854321
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH--cCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 195 HYKYNPVKTIKTNVMGTLNMLGLAKR--VGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 195 ~~~~~~~~~~~~Nv~gt~~ll~~a~~--~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
++ .+.++++++++ .+. +||++||.++||...+.+++|++ |..+.+.|+.+|
T Consensus 78 ----~~---------~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~-----~~~p~~~Y~~sK 131 (286)
T 3ius_A 78 ----DP---------VLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETT-----PLTPTAARGRWR 131 (286)
T ss_dssp ----CH---------HHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTS-----CCCCCSHHHHHH
T ss_pred ----cH---------HHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCC-----CCCCCCHHHHHH
Confidence 11 24688899888 454 99999999999988888899994 677778898876
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=147.58 Aligned_cols=121 Identities=16% Similarity=0.045 Sum_probs=92.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. . .++.++.+|++|+. +.+
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~-~~~~~~~~D~~d~~~v~~~~~~~~~~~g~ 86 (263)
T 3ak4_A 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGL-E-NGGFAVEVDVTKRASVDAAMQKAIDALGG 86 (263)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-T-TCCEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-h-cCCeEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 357899999999999999999999999999999998755433322222 2 26788899998762 237
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~vyg 235 (263)
+|+||||||........ +++++.+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 87 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 151 (263)
T 3ak4_A 87 FDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKV 151 (263)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTS
T ss_pred CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccc
Confidence 99999999975433322 24678899999999999888743 33 4999999987653
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=148.13 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=90.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+. ..++.++.+|++|+. +.++
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i 75 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG----------EAKYDHIECDVTNPDQVKASIDHIFKEYGSI 75 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC----------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc----------CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 578899999999999999999999999999999987543 245788899998762 2469
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
|+||||||......+. +++++.+++|+.|+.++++++.+ .+ .+||++||.+.+.
T Consensus 76 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 138 (264)
T 2dtx_A 76 SVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASI 138 (264)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTS
T ss_pred CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhcc
Confidence 9999999976543322 24678899999999999988754 23 4999999987764
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-18 Score=148.87 Aligned_cols=123 Identities=16% Similarity=0.078 Sum_probs=95.5
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------ 177 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.+ ...++.++.+|+++..
T Consensus 25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 104 (283)
T 1g0o_A 25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKI 104 (283)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999987654322222211 2457888999998752
Q ss_pred cCCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc--C-CeEEEEcCccee
Q 024766 178 LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV--G-AKFLLTSTSEVY 234 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~--~-~~iV~vSS~~vy 234 (263)
+.++|+||||||....... .+++++.+++|+.|+.++++++.+. + .+||++||...+
T Consensus 105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~ 168 (283)
T 1g0o_A 105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ 168 (283)
T ss_dssp HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhc
Confidence 3479999999997644332 2346788999999999999998765 3 499999997654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-18 Score=146.60 Aligned_cols=125 Identities=14% Similarity=0.050 Sum_probs=96.7
Q ss_pred cccCCCCEEEEEcCCC-hHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc----------
Q 024766 111 GIGRRRLRIVVTGGAG-FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI---------- 177 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG-~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~---------- 177 (263)
...+++|+++||||+| +||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|..
T Consensus 17 ~~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 96 (266)
T 3o38_A 17 HGLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTV 96 (266)
T ss_dssp CSTTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred ccCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHH
Confidence 3457899999999987 79999999999999999999998665444333332 3458999999998862
Q ss_pred --cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc-----C-CeEEEEcCcceec
Q 024766 178 --LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV-----G-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 --~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~-----~-~~iV~vSS~~vyg 235 (263)
+..+|+||||||......+. +++++.+++|+.|+.++++++... + .+||++||...+.
T Consensus 97 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~ 166 (266)
T 3o38_A 97 EKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWR 166 (266)
T ss_dssp HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTC
T ss_pred HHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcC
Confidence 24699999999976544322 246778999999999999987543 3 3899999986653
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.2e-18 Score=147.42 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=91.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ...+.++.+|++|+. +.++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 82 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL--ADAARYVHLDVTQPAQWKAAVDTAVTAFGGL 82 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--hcCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 57889999999999999999999999999999998755433322222 124788999998762 2379
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
|+||||||......+. +++++.+++|+.|+.++++++ ++.+. +||++||.+.+.
T Consensus 83 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 145 (260)
T 1nff_A 83 HVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA 145 (260)
T ss_dssp CEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcC
Confidence 9999999976543322 246788999999998777665 34444 999999987764
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.6e-18 Score=148.72 Aligned_cols=124 Identities=16% Similarity=0.101 Sum_probs=95.7
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc-chhhhhhhc--CCCceEEEEccccccc-----------
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG-RKDNLVHHF--RNPRFELIRHDVVEPI----------- 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~-~~~~~~~~~--~~~~v~~~~~Dv~~~~----------- 177 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+. ..+.+.+.. ...++.++.+|++|+.
T Consensus 45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 124 (294)
T 3r3s_A 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKARE 124 (294)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999886332 222222221 3567889999998862
Q ss_pred -cCCCcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCcceec
Q 024766 178 -LLEVDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYG 235 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~vyg 235 (263)
+..+|+||||||.... ..+ .+++++.+++|+.|+.++++++.... .+||++||.+.+.
T Consensus 125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~ 191 (294)
T 3r3s_A 125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQ 191 (294)
T ss_dssp HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTS
T ss_pred HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhcc
Confidence 3579999999997542 222 23467889999999999999987653 3899999988775
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-18 Score=147.57 Aligned_cols=122 Identities=13% Similarity=0.092 Sum_probs=94.0
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~ 179 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++.++.+|+++.. +.
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 82 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI--GDAALAVAADISKEADVDAAVEAALSKFG 82 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh--CCceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence 3567899999999999999999999999999999999765544433332 457889999998862 24
Q ss_pred CCcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHHc---------CCeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAKRV---------GAKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---------~~~iV~vSS~~vyg 235 (263)
.+|+||||||.... ... .+++++.+++|+.|+.++++++... ..+||++||...+.
T Consensus 83 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 152 (261)
T 3n74_A 83 KVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGR 152 (261)
T ss_dssp CCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTS
T ss_pred CCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcC
Confidence 79999999997542 222 2346778999999999998886432 22799999987653
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-18 Score=147.78 Aligned_cols=121 Identities=19% Similarity=0.156 Sum_probs=92.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++.++.+|++|+. +..
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc--CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 357889999999999999999999999999999998755433332222 456888999998862 246
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCCeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~~iV~vSS~~vyg 235 (263)
+|+||||||......+. +++++.+++|+.|+.++++++. +.+.+||++||.+.+.
T Consensus 81 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 143 (253)
T 1hxh_A 81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWL 143 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcCCEEEEEcchhhcC
Confidence 89999999976443322 2467889999999988877653 3335999999987764
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-18 Score=145.23 Aligned_cols=120 Identities=15% Similarity=0.076 Sum_probs=92.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +.+
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 80 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD 80 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999997665444333221 2567899999998862 236
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vy 234 (263)
+|+||||||......+. +++++.+++|+.|+.++++++.. .+.++|++||...+
T Consensus 81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~ 142 (235)
T 3l77_A 81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSA 142 (235)
T ss_dssp CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGS
T ss_pred CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhc
Confidence 99999999986544432 34678899999999999998753 34578888776443
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.7e-18 Score=145.93 Aligned_cols=122 Identities=12% Similarity=0.025 Sum_probs=94.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +..
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (247)
T 3lyl_A 3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLA 82 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 568899999999999999999999999999999997655443332221 3467899999998862 236
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vyg 235 (263)
+|+||||||....... .+++++.+++|+.|+.++++.+.+ .+. +||++||...+.
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 146 (247)
T 3lyl_A 83 IDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSA 146 (247)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhcc
Confidence 9999999997654332 234678899999999999888643 333 999999986654
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.4e-18 Score=147.01 Aligned_cols=123 Identities=15% Similarity=0.083 Sum_probs=87.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------c-
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L- 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~- 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|+.+.. +
T Consensus 11 ~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 90 (266)
T 1xq1_A 11 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG 90 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 3678999999999999999999999999999999987554333222221 2456888999998752 1
Q ss_pred CCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vyg 235 (263)
.++|+||||||....... .+++++.+++|+.|+.++++++ ++.+ .+||++||.+.+.
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~ 156 (266)
T 1xq1_A 91 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVV 156 (266)
T ss_dssp TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC------
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcc
Confidence 579999999997543322 2246778999999999999987 3444 4999999987764
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-18 Score=148.40 Aligned_cols=123 Identities=13% Similarity=0.148 Sum_probs=95.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEcccccc--------ccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEP--------ILLEV 181 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~--------~~~~i 181 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ....+..+.+|++++ .+.++
T Consensus 7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~i 86 (267)
T 3t4x_A 7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKV 86 (267)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCC
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCC
Confidence 4678999999999999999999999999999999998665444333321 245678899999876 23579
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
|+||||||......+. +++++.+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 149 (267)
T 3t4x_A 87 DILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIM 149 (267)
T ss_dssp SEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTS
T ss_pred CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhcc
Confidence 9999999986554432 2456779999999888877753 3443 999999987663
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.1e-18 Score=148.53 Aligned_cols=123 Identities=12% Similarity=0.024 Sum_probs=94.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchh-------hhhhhc-CCCceEEEEccccccc-------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD-------NLVHHF-RNPRFELIRHDVVEPI------- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~-------~~~~~~-~~~~v~~~~~Dv~~~~------- 177 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+ ...+.. ...++.++.+|++|+.
T Consensus 6 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 85 (285)
T 3sc4_A 6 SLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVA 85 (285)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHH
Confidence 4678999999999999999999999999999999998664221 111111 2457899999998862
Q ss_pred -----cCCCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEEcCcceec
Q 024766 178 -----LLEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 -----~~~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~----~-~~iV~vSS~~vyg 235 (263)
+..+|+||||||......+.+ ++++.+++|+.|+.++++++... + .+||++||...+.
T Consensus 86 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 157 (285)
T 3sc4_A 86 KTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLE 157 (285)
T ss_dssp HHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCS
T ss_pred HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhcc
Confidence 247999999999865444332 35777899999999999988544 3 3999999976553
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.7e-18 Score=146.18 Aligned_cols=125 Identities=18% Similarity=0.115 Sum_probs=91.0
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhh-hhhhc-CCCceEEEEccccccc-----------
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN-LVHHF-RNPRFELIRHDVVEPI----------- 177 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~-~~~~~-~~~~v~~~~~Dv~~~~----------- 177 (263)
....++|+++||||+|+||++++++|+++|++|++++++.....+. ..+.. ...++.++.+|++|..
T Consensus 8 ~~~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 87 (256)
T 3ezl_A 8 HMVMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKA 87 (256)
T ss_dssp -----CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999988544333322 22221 3467889999998862
Q ss_pred -cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 178 -LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
+.++|+||||||......+. +++++.+++|+.|+.++++++ ++.+. +||++||.+.+.
T Consensus 88 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 155 (256)
T 3ezl_A 88 EVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQK 155 (256)
T ss_dssp HTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG
T ss_pred hcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcc
Confidence 24799999999976543322 346788999999999987776 34444 999999976653
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-18 Score=145.71 Aligned_cols=120 Identities=19% Similarity=0.169 Sum_probs=92.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc--chhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG--RKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~--~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+|+++||||+|+||++++++|+++|++|++++|+.+. ..+...+.. ...++.++.+|++|+. +..
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 81 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG 81 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 6899999999999999999999999999999987654 332222221 2457889999998862 247
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~vyg 235 (263)
+|+||||||......+ .+++++.+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 146 (258)
T 3a28_C 82 FDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQ 146 (258)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTS
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhcc
Confidence 9999999997544332 234678899999999999988754 23 5999999987654
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-18 Score=147.98 Aligned_cols=122 Identities=17% Similarity=0.097 Sum_probs=91.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC-C-------CceEEEEccccccc-------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-N-------PRFELIRHDVVEPI------- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~-~-------~~v~~~~~Dv~~~~------- 177 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+... . .++.++.+|++|..
T Consensus 4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 83 (264)
T 2pd6_A 4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE 83 (264)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence 35678999999999999999999999999999999875543332222211 1 46788999998762
Q ss_pred -----cCCC-cEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc----C--CeEEEEcCccee
Q 024766 178 -----LLEV-DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVY 234 (263)
Q Consensus 178 -----~~~i-D~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~--~~iV~vSS~~vy 234 (263)
+..+ |+||||||......+ .+++++.+++|+.|+.++++++.+. + .+||++||...+
T Consensus 84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~ 156 (264)
T 2pd6_A 84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGK 156 (264)
T ss_dssp HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHH
T ss_pred HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhc
Confidence 2345 999999997654322 2346788999999999999987543 3 389999997654
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.5e-18 Score=149.89 Aligned_cols=122 Identities=15% Similarity=0.084 Sum_probs=94.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC-CC---ceEEEEccccccc------------
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NP---RFELIRHDVVEPI------------ 177 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~-~~---~v~~~~~Dv~~~~------------ 177 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+... .. ++.++.+|++|+.
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 83 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999976544433332221 22 6889999998862
Q ss_pred cCCCcEEEEccCCCCCCC----C----CCCHHHHHHHHHHHHHHHHHHHHHc----CCeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVH----Y----KYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~----~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~iV~vSS~~vyg 235 (263)
+..+|+||||||...... . .+++++.+++|+.|+.++++++... +.+||++||...+.
T Consensus 84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 153 (280)
T 1xkq_A 84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSIVAGP 153 (280)
T ss_dssp HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSS
T ss_pred cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCCCcEEEecCccccC
Confidence 246999999999754332 1 1246788999999999999987542 36999999987764
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-18 Score=151.68 Aligned_cols=122 Identities=11% Similarity=0.101 Sum_probs=94.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC---eEEEEecCCccchhhhhhhc---CCCceEEEEccccccc---------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI--------- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~---~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~--------- 177 (263)
.+++|+++||||+|+||++++++|+++|+ +|++++|+.+...+...+.. ...++.++.+|++|+.
T Consensus 30 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 109 (287)
T 3rku_A 30 RLAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENL 109 (287)
T ss_dssp HHTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTS
T ss_pred hcCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 46889999999999999999999999998 99999987655443333221 2567899999998862
Q ss_pred ---cCCCcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCccee
Q 024766 178 ---LLEVDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVY 234 (263)
Q Consensus 178 ---~~~iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vy 234 (263)
+..+|+||||||.... ..+ .+++++.+++|+.|+.++++++. +.+ .+||++||.+.+
T Consensus 110 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~ 179 (287)
T 3rku_A 110 PQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGR 179 (287)
T ss_dssp CGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT
T ss_pred HHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhc
Confidence 2469999999997542 222 23467889999999999999873 333 499999998665
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.74 E-value=9.5e-18 Score=145.05 Aligned_cols=120 Identities=13% Similarity=0.021 Sum_probs=91.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+ .+...+.. ...++.++.+|++|+. +.+
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 79 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGG 79 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 46789999999999999999999999999999998765 22222221 2356888999998762 237
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
+|+||||||......+ .+++++.+++|+.|+.++++++ ++.+. +||++||.+.+.
T Consensus 80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 143 (255)
T 2q2v_A 80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLV 143 (255)
T ss_dssp CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhcc
Confidence 9999999997543332 2346788999999988877765 45554 999999987664
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-18 Score=151.04 Aligned_cols=122 Identities=16% Similarity=0.081 Sum_probs=90.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ....+.++.+|++|+. +
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 109 (281)
T 4dry_A 30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEF 109 (281)
T ss_dssp ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4688999999999999999999999999999999997655443333221 2334688999998862 2
Q ss_pred CCCcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHH----HcC---CeEEEEcCccee
Q 024766 179 LEVDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG---AKFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~---~~iV~vSS~~vy 234 (263)
..+|+||||||.... ... .+++++.+++|+.|+.++++++. +.+ .+||++||.+.+
T Consensus 110 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~ 177 (281)
T 4dry_A 110 ARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQ 177 (281)
T ss_dssp SCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGT
T ss_pred CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhC
Confidence 479999999997543 222 23467889999999999888763 332 399999997655
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.8e-18 Score=146.35 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=92.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc-----cC------
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI-----LL------ 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~-----~~------ 179 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +.
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (260)
T 2z1n_A 5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG 84 (260)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999997554333222221 1237889999998762 11
Q ss_pred CCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
++|+||||||....... .+++++.+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 149 (260)
T 2z1n_A 85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLR 149 (260)
T ss_dssp CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcC
Confidence 39999999997543332 22467889999999988877753 4444 999999987764
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-18 Score=148.65 Aligned_cols=125 Identities=14% Similarity=0.019 Sum_probs=94.8
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC--CCceEEEEccccccc-----------
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR--NPRFELIRHDVVEPI----------- 177 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~Dv~~~~----------- 177 (263)
...+++|+++||||+||||++++++|+++|++|++++|+.+...+...+... ..++.++.+|+++..
T Consensus 21 ~~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 100 (302)
T 1w6u_A 21 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIK 100 (302)
T ss_dssp TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHH
Confidence 3357889999999999999999999999999999999976544332222211 457899999998762
Q ss_pred -cCCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH-----cC-CeEEEEcCcceec
Q 024766 178 -LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR-----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~-----~~-~~iV~vSS~~vyg 235 (263)
+..+|+||||||....... .+++++.+++|+.|+.++++++.+ .+ .+||++||.+.+.
T Consensus 101 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~ 169 (302)
T 1w6u_A 101 VAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAET 169 (302)
T ss_dssp HTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHH
T ss_pred HcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEccccccc
Confidence 2468999999997543222 234678899999999999888743 23 3999999987664
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-18 Score=147.18 Aligned_cols=122 Identities=13% Similarity=0.028 Sum_probs=93.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhh-hhhc-CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL-VHHF-RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~-~~~~-~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++++.....+.. .+.. ...++.++.+|++|.. +
T Consensus 5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999855544333322 2221 2457889999998862 2
Q ss_pred CCCcEEEEccCCCCC-CCCC----CCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCccee
Q 024766 179 LEVDQIYHLACPASP-VHYK----YNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~vy 234 (263)
..+|+||||||.... .... +++++.+++|+.|+.++++++.... .+||++||...+
T Consensus 85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~ 148 (259)
T 3edm_A 85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGR 148 (259)
T ss_dssp CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHH
T ss_pred CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhc
Confidence 479999999986522 2222 2357889999999999999987653 389999998776
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-18 Score=146.56 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=93.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++++. +.
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 83 (262)
T 1zem_A 4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG 83 (262)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3678999999999999999999999999999999987554433322221 2457889999998862 24
Q ss_pred CCcEEEEccCCC-CCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPA-SPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~-~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
++|+||||||.. ....+ .+++++.+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 149 (262)
T 1zem_A 84 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVK 149 (262)
T ss_dssp CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHS
T ss_pred CCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcc
Confidence 799999999975 32222 234678899999999999988654 23 3999999976654
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7.7e-18 Score=144.10 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=91.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------cCCCcEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEVDQI 184 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~--------~~~iD~V 184 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++++.+|++|.. +..+|+|
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~v 80 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC---PGIEPVCVDLGDWEATERALGSVGPVDLL 80 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHTTCCCCCEE
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc---CCCCEEEEeCCCHHHHHHHHHHcCCCCEE
Confidence 357889999999999999999999999999999998754433222221 24567789998762 2368999
Q ss_pred EEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc----C--CeEEEEcCcceec
Q 024766 185 YHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYG 235 (263)
Q Consensus 185 i~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~--~~iV~vSS~~vyg 235 (263)
|||||......+. +++++.+++|+.|+.++++++.+. + .+||++||...+.
T Consensus 81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~ 141 (244)
T 3d3w_A 81 VNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR 141 (244)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS
T ss_pred EECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhcc
Confidence 9999975433322 246788999999999998887542 4 4899999987764
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-18 Score=148.26 Aligned_cols=127 Identities=13% Similarity=0.007 Sum_probs=91.9
Q ss_pred CccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhh-hhhc-CCCceEEEEccccccc---------
Q 024766 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL-VHHF-RNPRFELIRHDVVEPI--------- 177 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~-~~~~-~~~~v~~~~~Dv~~~~--------- 177 (263)
.....+++|+++||||+|+||++++++|+++|++|++++++.....+.. .+.. ...++.++.+|++|+.
T Consensus 19 ~~~~~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~ 98 (267)
T 4iiu_A 19 YFQSNAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHE 98 (267)
T ss_dssp ------CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred hhccccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence 3444568899999999999999999999999999988765543332222 2221 3567899999998862
Q ss_pred ---cCCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH-----HcC-CeEEEEcCcceec
Q 024766 178 ---LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK-----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 ---~~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~-----~~~-~~iV~vSS~~vyg 235 (263)
+..+|+||||||......+ .++++..+++|+.|+.++++.+. +.+ .+||++||.+.+.
T Consensus 99 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~ 169 (267)
T 4iiu_A 99 IAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVM 169 (267)
T ss_dssp HHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHH
T ss_pred HHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhcc
Confidence 2479999999997654432 23467889999999999999863 333 4999999976553
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=7.3e-18 Score=146.87 Aligned_cols=120 Identities=20% Similarity=0.218 Sum_probs=93.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. . .++..+.+|++|+. +..+
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i 81 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL-E-AEAIAVVADVSDPKAVEAVFAEALEEFGRL 81 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-C-SSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-c-CceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 56889999999999999999999999999999998755443332222 2 56888999998762 2468
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
|+||||||........ +++++.+++|+.|+.++++++.+. +.+||++||.+.++
T Consensus 82 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~ 142 (263)
T 2a4k_A 82 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG 142 (263)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC
T ss_pred cEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcC
Confidence 9999999975443322 235778999999999999998664 34999999987763
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-18 Score=144.88 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=90.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------cCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +.++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 81 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI 81 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 6799999999999999999999999999999987554433222221 1346889999998862 2379
Q ss_pred cEEEEccCCCCCCC---C----CCCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 182 DQIYHLACPASPVH---Y----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~---~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
|+||||||...... + .+++++.+++|+.|+.++++.+. +.+. +||++||.+.+.
T Consensus 82 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 147 (250)
T 2cfc_A 82 DVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLV 147 (250)
T ss_dssp CEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred CEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc
Confidence 99999999754332 2 23467889999999988777653 3354 999999987664
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.7e-18 Score=147.38 Aligned_cols=123 Identities=11% Similarity=0.021 Sum_probs=95.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+.+.+.+ ...++.++.+|+++.. .
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 105 (271)
T 4iin_A 26 QFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSD 105 (271)
T ss_dssp CCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhc
Confidence 4688999999999999999999999999999999996555444433322 3567899999998862 2
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
.++|+||||||........ +++++.+++|+.|+.++++.+.+ .+ .+||++||...+.
T Consensus 106 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 171 (271)
T 4iin_A 106 GGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGER 171 (271)
T ss_dssp SSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH
T ss_pred CCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcC
Confidence 4799999999976544322 34678899999999998887643 34 3999999976653
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=6.6e-18 Score=146.41 Aligned_cols=136 Identities=17% Similarity=0.203 Sum_probs=100.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC--CCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR--NPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~--~~~v~~~~~Dv~~~~------------~~ 179 (263)
+.+|+++||||+|+||++++++|+++|++|++++|+.....+.+.+... ..++.++.+|++|+. +.
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 84 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFG 84 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999999998876554444443322 357899999998862 24
Q ss_pred CCcEEEEccCC--CCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceecCCCCCCcCCCCCC
Q 024766 180 EVDQIYHLACP--ASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWG 248 (263)
Q Consensus 180 ~iD~Vi~~Ag~--~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~ 248 (263)
.+|+||||||+ ...... .+++++.+++|+.|+.++++++ ++.+. +||++||.+.++..
T Consensus 85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~----------- 153 (264)
T 3i4f_A 85 KIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAP----------- 153 (264)
T ss_dssp CCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCC-----------
T ss_pred CCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccC-----------
Confidence 79999999994 222222 2346788999999999999987 44454 99999998655311
Q ss_pred CCCCCCcCccccccC
Q 024766 249 NVNPIGELLAATAVV 263 (263)
Q Consensus 249 ~~~p~~~~~~Y~~sK 263 (263)
+..+...|++||
T Consensus 154 ---~~~~~~~Y~asK 165 (264)
T 3i4f_A 154 ---GWIYRSAFAAAK 165 (264)
T ss_dssp ---CCTTCHHHHHHH
T ss_pred ---CCCCCchhHHHH
Confidence 233456787776
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.4e-18 Score=144.65 Aligned_cols=123 Identities=16% Similarity=0.134 Sum_probs=93.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.....++.++.+|++++. +..
T Consensus 3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (251)
T 1zk4_A 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 35788999999999999999999999999999999875543333332222357899999998762 235
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vyg 235 (263)
+|+||||||........ +++++.+++|+.|+.++++.+. +.+ .+||++||...+.
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 147 (251)
T 1zk4_A 83 VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFV 147 (251)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTS
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhcc
Confidence 99999999975433322 2357789999999888777653 344 4899999987764
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.3e-18 Score=145.40 Aligned_cols=121 Identities=16% Similarity=0.069 Sum_probs=90.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEec-CCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN-FFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r-~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
+++|+++||||+|+||++++++|+++|++|++++| +.+...+...+.. ...++.++.+|++|+. +.
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFG 81 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999999999999998 4333222222211 2457888999998862 24
Q ss_pred CCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vy 234 (263)
++|+||||||......+ .+++++.+++|+.|+.++++++. +.+. +||++||...+
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 145 (246)
T 2uvd_A 82 QVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGV 145 (246)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHH
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhc
Confidence 79999999997644332 22467889999999888877653 3444 99999998654
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.2e-18 Score=147.17 Aligned_cols=142 Identities=15% Similarity=0.034 Sum_probs=102.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+...+.. ...++.++.+|++|.. +
T Consensus 11 ~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 90 (265)
T 1h5q_A 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL 90 (265)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999999999997655433332221 1457889999998762 2
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc----C--CeEEEEcCcceecCCCCCCcCCCCCC
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G--AKFLLTSTSEVYGDPLEHPQKETYWG 248 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~--~~iV~vSS~~vyg~~~~~~~~E~~~~ 248 (263)
..+|+||||||........ +++++.+++|+.|+.++++++.+. + .+||++||...+..... +
T Consensus 91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~----~---- 162 (265)
T 1h5q_A 91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQS----S---- 162 (265)
T ss_dssp CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEE----E----
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccc----c----
Confidence 4599999999976543322 246778999999999999987432 2 48999999876542110 0
Q ss_pred CCCCCCcCccccccC
Q 024766 249 NVNPIGELLAATAVV 263 (263)
Q Consensus 249 ~~~p~~~~~~Y~~sK 263 (263)
.++..+...|++||
T Consensus 163 -~~~~~~~~~Y~~sK 176 (265)
T 1h5q_A 163 -LNGSLTQVFYNSSK 176 (265)
T ss_dssp -TTEECSCHHHHHHH
T ss_pred -ccccccccccHHHH
Confidence 02334567788776
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=145.08 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=88.7
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------c
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~ 178 (263)
...+++|+++||||+|+||++++++|+++|++|++++|+.+... .+..+.+|++|+. +
T Consensus 16 ~~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~----------~~~~~~~Dl~d~~~v~~~~~~~~~~~ 85 (253)
T 2nm0_A 16 PRSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE----------GFLAVKCDITDTEQVEQAYKEIEETH 85 (253)
T ss_dssp ----CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT----------TSEEEECCTTSHHHHHHHHHHHHHHT
T ss_pred ccCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc----------cceEEEecCCCHHHHHHHHHHHHHHc
Confidence 34567899999999999999999999999999999998754322 2678889998762 2
Q ss_pred CCCcEEEEccCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vy 234 (263)
..+|+||||||...... ..+++++.+++|+.|+.++++++.+ .+. +||++||.+.+
T Consensus 86 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~ 150 (253)
T 2nm0_A 86 GPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGL 150 (253)
T ss_dssp CSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhC
Confidence 45899999999754322 3456889999999999999987643 344 99999997655
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=150.46 Aligned_cols=125 Identities=13% Similarity=-0.001 Sum_probs=96.5
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchh-------hhhhhc-CCCceEEEEccccccc-----
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD-------NLVHHF-RNPRFELIRHDVVEPI----- 177 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~-------~~~~~~-~~~~v~~~~~Dv~~~~----- 177 (263)
...+++|+++||||+|+||.+++++|+++|++|++++|+.+...+ ...+.. ...++.++.+|++|+.
T Consensus 40 ~~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~ 119 (346)
T 3kvo_A 40 TGRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAA 119 (346)
T ss_dssp CSTTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHH
T ss_pred CCCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 345789999999999999999999999999999999998664221 111111 3467889999998862
Q ss_pred -------cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 178 -------LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 -------~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
+.++|+||||||......+. +++++.+++|+.|+.++++++.. .+ .+||++||...+.
T Consensus 120 ~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~ 193 (346)
T 3kvo_A 120 VEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLN 193 (346)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcC
Confidence 34799999999976544332 24678899999999999998743 33 3999999987664
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-18 Score=145.32 Aligned_cols=122 Identities=16% Similarity=0.069 Sum_probs=91.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEec-CCccchhhhhhhc-CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN-FFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r-~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++| +.+...+...+.. ...++.++.+|++++. +
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (261)
T 1gee_A 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 357889999999999999999999999999999998 4332222222211 2456888999998762 2
Q ss_pred CCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~vy 234 (263)
.++|+||||||....... .+++++.+++|+.|+.++++++.+ .+ .+||++||...+
T Consensus 84 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~ 149 (261)
T 1gee_A 84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK 149 (261)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhc
Confidence 379999999997644322 234678899999999998887643 33 499999997655
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=142.65 Aligned_cols=113 Identities=18% Similarity=0.159 Sum_probs=89.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+.. ...+..+.+|++|+. +.++
T Consensus 5 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~---------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i 75 (250)
T 2fwm_X 5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE---------QYPFATEVMDVADAAQVAQVCQRLLAETERL 75 (250)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSS---------CCSSEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhh---------cCCceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5688999999999999999999999999999999875421 112778889998762 2479
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vyg 235 (263)
|+||||||........ +++++.+++|+.|+.++++++ ++.+ .+||++||.+.+.
T Consensus 76 d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~ 138 (250)
T 2fwm_X 76 DALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHT 138 (250)
T ss_dssp CEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS
T ss_pred CEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCC
Confidence 9999999975433322 346788999999999999987 3334 4999999987664
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-18 Score=148.17 Aligned_cols=126 Identities=17% Similarity=0.097 Sum_probs=92.6
Q ss_pred ccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC-ccchhhhhhh--cCCCceEEEEccccc----c------
Q 024766 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHH--FRNPRFELIRHDVVE----P------ 176 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~-~~~~~~~~~~--~~~~~v~~~~~Dv~~----~------ 176 (263)
....+++|+++||||+|+||++++++|+++|++|++++|+. +...+...+. ....++.++.+|+++ +
T Consensus 17 ~~~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~ 96 (288)
T 2x9g_A 17 RGSHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEI 96 (288)
T ss_dssp -----CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHH
T ss_pred CCcCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHH
Confidence 33457889999999999999999999999999999999986 4333222222 124578899999998 4
Q ss_pred ------ccCCCcEEEEccCCCCCCCC-----C---------CCHHHHHHHHHHHHHHHHHHHHHc-----------CCeE
Q 024766 177 ------ILLEVDQIYHLACPASPVHY-----K---------YNPVKTIKTNVMGTLNMLGLAKRV-----------GAKF 225 (263)
Q Consensus 177 ------~~~~iD~Vi~~Ag~~~~~~~-----~---------~~~~~~~~~Nv~gt~~ll~~a~~~-----------~~~i 225 (263)
.+..+|+||||||......+ . +++++.+++|+.|+.++++++... +.+|
T Consensus 97 ~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~i 176 (288)
T 2x9g_A 97 INSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSI 176 (288)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEE
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEE
Confidence 12479999999997543333 1 235677899999999999887532 2389
Q ss_pred EEEcCcceec
Q 024766 226 LLTSTSEVYG 235 (263)
Q Consensus 226 V~vSS~~vyg 235 (263)
|++||.+.+.
T Consensus 177 v~isS~~~~~ 186 (288)
T 2x9g_A 177 VNLCDAMVDQ 186 (288)
T ss_dssp EEECCTTTTS
T ss_pred EEEecccccC
Confidence 9999987664
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=145.66 Aligned_cols=124 Identities=11% Similarity=0.036 Sum_probs=95.3
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc--hhhhh-hhc-CCCceEEEEccccccc----------
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR--KDNLV-HHF-RNPRFELIRHDVVEPI---------- 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~--~~~~~-~~~-~~~~v~~~~~Dv~~~~---------- 177 (263)
..+++|+++||||+|+||++++++|+++|++|++++|..... .+.+. +.. ...++.++.+|++|+.
T Consensus 7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~ 86 (262)
T 3ksu_A 7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAE 86 (262)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 356889999999999999999999999999999998753321 12222 221 2467889999998862
Q ss_pred --cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 178 --LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 178 --~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
+..+|+||||||......+. +++++.+++|+.|+.++++++... +.+||++||.+.+.
T Consensus 87 ~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~ 153 (262)
T 3ksu_A 87 KEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAA 153 (262)
T ss_dssp HHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHH
T ss_pred HHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhcc
Confidence 24799999999976554432 246778899999999999999775 23899999987665
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.9e-18 Score=150.57 Aligned_cols=122 Identities=19% Similarity=0.166 Sum_probs=91.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch-hh---hhhhc--CCCceEEEEccccccc----------
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DN---LVHHF--RNPRFELIRHDVVEPI---------- 177 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~-~~---~~~~~--~~~~v~~~~~Dv~~~~---------- 177 (263)
+++|+++||||+||||++++++|+++|++|++++|+...+. +. +.... ...++..+.+|++|+.
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~ 82 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII 82 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999999988643322 11 11111 2467899999998862
Q ss_pred --cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 178 --LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 178 --~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
+.++|+||||||........ +++++.+++|+.|+.++++++ ++.+. +||++||.+.+.
T Consensus 83 ~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~ 151 (324)
T 3u9l_A 83 GEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAG 151 (324)
T ss_dssp HHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred HHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhcc
Confidence 24799999999975433322 246778999999999999987 44454 999999987663
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=9.5e-18 Score=145.12 Aligned_cols=119 Identities=19% Similarity=0.101 Sum_probs=90.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEVD 182 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~iD 182 (263)
+|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +.++|
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 81 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 81 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 5799999999999999999999999999999987554333222221 2456889999998862 24799
Q ss_pred EEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC--CeEEEEcCccee
Q 024766 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG--AKFLLTSTSEVY 234 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~--~~iV~vSS~~vy 234 (263)
+||||||......+. +++++.+++|+.|+.++++++.+ .+ .+||++||...+
T Consensus 82 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~ 143 (256)
T 1geg_A 82 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGH 143 (256)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhc
Confidence 999999975433322 24677899999999998887643 33 499999997654
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=144.08 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------cCCCcEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEVDQIY 185 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~--------~~~iD~Vi 185 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.++..+.. + ..++.++.+|++|+. +.++|+||
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~---~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv 79 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-K---YPGIQTRVLDVTKKKQIDQFANEVERLDVLF 79 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-G---STTEEEEECCTTCHHHHHHHHHHCSCCSEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-h---ccCceEEEeeCCCHHHHHHHHHHhCCCCEEE
Confidence 56889999999999999999999999999999998754433222 2 126888999998762 45799999
Q ss_pred EccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCcceec
Q 024766 186 HLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYG 235 (263)
Q Consensus 186 ~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vyg 235 (263)
||||......+. ++++..+++|+.|+.++++++.+ .+. +||++||.+.+.
T Consensus 80 ~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 138 (246)
T 2ag5_A 80 NVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSV 138 (246)
T ss_dssp ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTT
T ss_pred ECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCc
Confidence 999976543322 34677899999999999998743 343 999999986654
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-18 Score=144.42 Aligned_cols=123 Identities=17% Similarity=0.131 Sum_probs=91.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccc--ccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDV--VEP------------ 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv--~~~------------ 176 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ....+.++.+|+ .+.
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~ 90 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH 90 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence 4688999999999999999999999999999999998665443333221 234566666666 554
Q ss_pred ccCCCcEEEEccCCCCCC-CC----CCCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 177 ILLEVDQIYHLACPASPV-HY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 177 ~~~~iD~Vi~~Ag~~~~~-~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
.+..+|+||||||..... .+ .+++++.+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~ 159 (247)
T 3i1j_A 91 EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRK 159 (247)
T ss_dssp HHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTS
T ss_pred hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcC
Confidence 234799999999975332 22 23467889999999999999873 3333 899999976553
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-18 Score=149.97 Aligned_cols=123 Identities=14% Similarity=0.084 Sum_probs=94.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCC---ceEEEEccccccc-----------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNP---RFELIRHDVVEPI----------- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~---~v~~~~~Dv~~~~----------- 177 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ... ++.++.+|++|+.
T Consensus 23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 102 (297)
T 1xhl_A 23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 102 (297)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999999997654433332221 122 6889999998862
Q ss_pred -cCCCcEEEEccCCCCCCC--C----CCCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCcceec
Q 024766 178 -LLEVDQIYHLACPASPVH--Y----KYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYG 235 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~~~--~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vyg 235 (263)
+..+|+||||||...... + .+++++.+++|+.|+.++++++.+ .+.+||++||...+.
T Consensus 103 ~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~IV~isS~~~~~ 171 (297)
T 1xhl_A 103 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGP 171 (297)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSS
T ss_pred hcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCEEEEEcCchhcc
Confidence 247999999999754332 2 224678899999999999988754 335999999987664
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.7e-18 Score=146.84 Aligned_cols=125 Identities=16% Similarity=0.118 Sum_probs=92.9
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhh-hc-CCCceEEEEccccccc-----------
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH-HF-RNPRFELIRHDVVEPI----------- 177 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~-~~-~~~~v~~~~~Dv~~~~----------- 177 (263)
...+++|+++||||+|+||++++++|+++|++|++++++.....+.... .. ...++.++.+|++|..
T Consensus 20 ~~~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~ 99 (269)
T 3gk3_A 20 GSMQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLA 99 (269)
T ss_dssp ----CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHH
T ss_pred hhhhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 3356789999999999999999999999999999998654433332222 21 3467899999998862
Q ss_pred -cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 178 -LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
+..+|+||||||......+. ++++..+++|+.|+.++++.+.. .+ .+||++||...+.
T Consensus 100 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 167 (269)
T 3gk3_A 100 DFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSR 167 (269)
T ss_dssp HHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH
T ss_pred HcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhcc
Confidence 24799999999976544332 24677899999999999888643 34 3999999976653
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.8e-18 Score=149.94 Aligned_cols=124 Identities=15% Similarity=0.103 Sum_probs=93.3
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc--------chhhh----hhh-cCCCceEEEEccccccc-
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG--------RKDNL----VHH-FRNPRFELIRHDVVEPI- 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~--------~~~~~----~~~-~~~~~v~~~~~Dv~~~~- 177 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+... ..+.+ ... ....++.++.+|++|+.
T Consensus 42 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~ 121 (317)
T 3oec_A 42 NRLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLAS 121 (317)
T ss_dssp CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred hccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence 35788999999999999999999999999999999876221 11111 111 13567899999998862
Q ss_pred -----------cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCcceec
Q 024766 178 -----------LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVYG 235 (263)
Q Consensus 178 -----------~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vyg 235 (263)
+..+|+||||||......+. +++++.+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 122 v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~ 200 (317)
T 3oec_A 122 LQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLR 200 (317)
T ss_dssp HHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSS
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcC
Confidence 34799999999976543322 3467889999999999998873 333 3899999987653
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-18 Score=147.72 Aligned_cols=122 Identities=11% Similarity=-0.005 Sum_probs=90.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.++ |+++||||+|+||++++++|+++|++|++++|+.+...+...+.....++.++.+|++|+. +..
T Consensus 19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 97 (272)
T 2nwq_A 19 HMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFAT 97 (272)
T ss_dssp --C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSS
T ss_pred CcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 345 8999999999999999999999999999999975544333332212247889999998762 245
Q ss_pred CcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHH----Hc-CC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAK----RV-GA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~-~~-~iV~vSS~~vyg 235 (263)
+|+||||||.... ..+ .+++++.+++|+.|+.++++++. +. .. +||++||...+.
T Consensus 98 iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~ 163 (272)
T 2nwq_A 98 LRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW 163 (272)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTS
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhcc
Confidence 8999999997542 222 23467889999999998887763 33 35 999999987653
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=145.13 Aligned_cols=126 Identities=15% Similarity=0.093 Sum_probs=93.2
Q ss_pred CccccCCCCEEEEEcCCChHHHHHHHHHHhCC---CeEEEEecCCccchhhhhhhc-CCCceEEEEcccccccc------
Q 024766 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRG---DEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPIL------ 178 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G---~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~~------ 178 (263)
+....+++|+++||||+|+||++++++|+++| ++|++++|+.+.... +.+.. ...++.++.+|+++...
T Consensus 14 ~~~~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~-~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~ 92 (267)
T 1sny_A 14 LVPRGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKE-LEDLAKNHSNIHILEIDLRNFDAYDKLVA 92 (267)
T ss_dssp ------CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHH-HHHHHHHCTTEEEEECCTTCGGGHHHHHH
T ss_pred ccccCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHH-HHHhhccCCceEEEEecCCChHHHHHHHH
Confidence 34446788999999999999999999999999 999999998665432 22221 24578999999987621
Q ss_pred ------C--CCcEEEEccCCCC-CCCC----CCCHHHHHHHHHHHHHHHHHHHHHc----------------CCeEEEEc
Q 024766 179 ------L--EVDQIYHLACPAS-PVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----------------GAKFLLTS 229 (263)
Q Consensus 179 ------~--~iD~Vi~~Ag~~~-~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----------------~~~iV~vS 229 (263)
. ++|+||||||... ...+ .+++++.+++|+.|+.++++++.+. +.+||++|
T Consensus 93 ~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~is 172 (267)
T 1sny_A 93 DIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMS 172 (267)
T ss_dssp HHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEEC
T ss_pred HHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEe
Confidence 2 6999999999755 2222 2346778999999999999887432 35899999
Q ss_pred Ccceec
Q 024766 230 TSEVYG 235 (263)
Q Consensus 230 S~~vyg 235 (263)
|...+.
T Consensus 173 S~~~~~ 178 (267)
T 1sny_A 173 SILGSI 178 (267)
T ss_dssp CGGGCS
T ss_pred cccccc
Confidence 987765
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-18 Score=143.48 Aligned_cols=118 Identities=14% Similarity=0.020 Sum_probs=89.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVD 182 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD 182 (263)
++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. .++..+.+|++|.. +.++|
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAEL---EGALPLPGDVREEGDWARAVAAMEEAFGELS 80 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---hhceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 4678999999999999999999999999999998754433222221 26788999998752 24799
Q ss_pred EEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 183 QIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
+||||||....... .+++++.+++|+.|+.++++.+ ++.+. +||++||.+.+.
T Consensus 81 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 142 (234)
T 2ehd_A 81 ALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKN 142 (234)
T ss_dssp EEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTS
T ss_pred EEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcC
Confidence 99999997543332 2246788999999998776654 44454 999999987664
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-18 Score=149.36 Aligned_cols=125 Identities=13% Similarity=-0.018 Sum_probs=94.6
Q ss_pred ccccCCCCEEEEEcCCC--hHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc---------
Q 024766 110 VGIGRRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI--------- 177 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG--~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~--------- 177 (263)
....+++|+++||||+| +||++++++|+++|++|++++|+.+.. +.+.+.. ....+.++.+|++|+.
T Consensus 24 ~~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~ 102 (296)
T 3k31_A 24 TGMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFK-KRVDPLAESLGVKLTVPCDVSDAESVDNMFKVL 102 (296)
T ss_dssp CCCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHH
T ss_pred chhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHH-HHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHH
Confidence 34457899999999997 999999999999999999999975432 2222211 1234678999998862
Q ss_pred ---cCCCcEEEEccCCCCC----CC----CCCCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCcceec
Q 024766 178 ---LLEVDQIYHLACPASP----VH----YKYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYG 235 (263)
Q Consensus 178 ---~~~iD~Vi~~Ag~~~~----~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~vyg 235 (263)
+..+|+||||||.... .. ..+++++.+++|+.|+.++++++.... .+||++||.+.+.
T Consensus 103 ~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~ 174 (296)
T 3k31_A 103 AEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEK 174 (296)
T ss_dssp HHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS
T ss_pred HHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhcc
Confidence 2479999999997642 12 223567889999999999999986542 3899999987653
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=136.56 Aligned_cols=109 Identities=18% Similarity=0.244 Sum_probs=88.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACPA 191 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~~ 191 (263)
|+|+||||+|+||++++++|+++|++|++++|+.+..... ...++.++.+|+.|+ .+.++|+||||||..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~ 78 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-----GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR 78 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-----SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccc-----cCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence 6899999999999999999999999999999975543211 145688999999875 356799999999864
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCC
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDP 237 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~ 237 (263)
... ++ .++|+.++.++++++++.+. +||++||.++|+..
T Consensus 79 ~~~----~~---~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~ 118 (206)
T 1hdo_A 79 NDL----SP---TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDP 118 (206)
T ss_dssp TCC----SC---CCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCT
T ss_pred CCC----Cc---cchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCc
Confidence 431 11 13899999999999998886 99999999999744
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-18 Score=146.38 Aligned_cols=118 Identities=19% Similarity=0.171 Sum_probs=90.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+|+++||||+|+||++++++|+++| +.|++++|+.+...+...+. ..++.++.+|++|+. +..+
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 79 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKY--GDRFFYVVGDITEDSVLKQLVNAAVKGHGKI 79 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHH--GGGEEEEESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHh--CCceEEEECCCCCHHHHHHHHHHHHHhcCCc
Confidence 6899999999999999999999985 68888888655433322222 357889999998862 2479
Q ss_pred cEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHH----HHcCCeEEEEcCcceec
Q 024766 182 DQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~~iV~vSS~~vyg 235 (263)
|+||||||.... ... .+++++.+++|+.|+.++++++ ++.+.+||++||...+.
T Consensus 80 d~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~g~iv~isS~~~~~ 142 (254)
T 3kzv_A 80 DSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTNGNVVFVSSDACNM 142 (254)
T ss_dssp CEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCSCCCC
T ss_pred cEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEcCchhcc
Confidence 999999997543 222 2346788999999999999987 44456999999987664
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=146.63 Aligned_cols=120 Identities=18% Similarity=0.126 Sum_probs=92.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+.... ...++.++.+|+++.. +..+
T Consensus 3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (281)
T 3zv4_A 3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVA--HGGNAVGVVGDVRSLQDQKRAAERCLAAFGKI 80 (281)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--TBTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH--cCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 5789999999999999999999999999999999875544333222 2457889999998862 3479
Q ss_pred cEEEEccCCCCCCCC-----C----CCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHY-----K----YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~-----~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vyg 235 (263)
|+||||||+...... . +.+++.+++|+.|+.++++++.. .+.+||++||...+.
T Consensus 81 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 147 (281)
T 3zv4_A 81 DTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRGSVVFTISNAGFY 147 (281)
T ss_dssp CEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGTS
T ss_pred CEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCeEEEEecchhcc
Confidence 999999997543211 1 13677889999999999998743 345999999976553
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-18 Score=148.27 Aligned_cols=126 Identities=14% Similarity=-0.056 Sum_probs=95.0
Q ss_pred CccccCCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc--------
Q 024766 109 PVGIGRRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI-------- 177 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~-------- 177 (263)
+....+++|+++||||+ |+||++++++|+++|++|++++|+.. ..+.+.+.. ....+.++.+|++++.
T Consensus 7 ~~~~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~ 85 (271)
T 3ek2_A 7 HHMGFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDR-FKDRITEFAAEFGSELVFPCDVADDAQIDALFAS 85 (271)
T ss_dssp --CCTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHH
T ss_pred CCccccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchh-hHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHH
Confidence 44556889999999999 99999999999999999999998733 222222221 2335788999998862
Q ss_pred ----cCCCcEEEEccCCCCC----CC-----CCCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 178 ----LLEVDQIYHLACPASP----VH-----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 178 ----~~~iD~Vi~~Ag~~~~----~~-----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
+..+|+||||||.... .. ..++++..+++|+.|+.++++++... +.+||++||.+.+.
T Consensus 86 ~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~ 159 (271)
T 3ek2_A 86 LKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAER 159 (271)
T ss_dssp HHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTS
T ss_pred HHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEecccccc
Confidence 2469999999997543 11 12346788999999999999998765 23899999987654
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6.7e-18 Score=145.81 Aligned_cols=117 Identities=15% Similarity=0.095 Sum_probs=89.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCCcEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEVDQI 184 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~iD~V 184 (263)
|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++.++.+|++|+. +.++|+|
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l 78 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL--GDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDIL 78 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEE
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--cCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEE
Confidence 58999999999999999999999999999998755433322222 246889999998762 2469999
Q ss_pred EEccCCCC-CCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 185 YHLACPAS-PVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 185 i~~Ag~~~-~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
|||||... .... .+++++.+++|+.|+.++++++. +.+ .+||++||.+.+.
T Consensus 79 vnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 139 (248)
T 3asu_A 79 VNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSW 139 (248)
T ss_dssp EECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTS
T ss_pred EECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhcc
Confidence 99999753 1221 23467889999999999988874 333 4999999987653
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=142.74 Aligned_cols=123 Identities=18% Similarity=0.080 Sum_probs=93.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|.. +.
T Consensus 10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 89 (260)
T 3awd_A 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEG 89 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999999999999987554333222221 2457899999998862 23
Q ss_pred CCcEEEEccCCCC-CCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCcceec
Q 024766 180 EVDQIYHLACPAS-PVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~-~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vyg 235 (263)
++|+||||||... ..... +++++.+++|+.|+.++++++.+ .+. +||++||.+.+.
T Consensus 90 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~ 155 (260)
T 3awd_A 90 RVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLI 155 (260)
T ss_dssp CCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred CCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcc
Confidence 7999999999754 22222 23577899999999999988754 344 999999986553
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=145.92 Aligned_cols=123 Identities=16% Similarity=0.079 Sum_probs=92.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~------------ 177 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ....+.++.+|++++.
T Consensus 29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 108 (279)
T 1xg5_A 29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ 108 (279)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999987554333222221 1246788999998862
Q ss_pred cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHH----HHHHHHHHHHcC---CeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMG----TLNMLGLAKRVG---AKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~g----t~~ll~~a~~~~---~~iV~vSS~~vyg 235 (263)
+.++|+||||||......+. ++++..+++|+.| +.++++.+++.+ .+||++||...++
T Consensus 109 ~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~ 177 (279)
T 1xg5_A 109 HSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHR 177 (279)
T ss_dssp HCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTS
T ss_pred CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcc
Confidence 23799999999975543322 2467889999999 555566666665 5999999987764
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=145.59 Aligned_cols=117 Identities=19% Similarity=0.260 Sum_probs=90.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCCCC-
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVH- 195 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~~- 195 (263)
|+|+|||||||||++|+++|+++|++|+++.|++... .+...++....+.++|.|||+||......
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~-------------~~~~~~~~~~~l~~~d~vihla~~~i~~~~ 67 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG-------------RITWDELAASGLPSCDAAVNLAGENILNPL 67 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT-------------EEEHHHHHHHCCCSCSEEEECCCCCSSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC-------------eeecchhhHhhccCCCEEEEeccCcccchh
Confidence 5799999999999999999999999999999864321 11111223345678999999998532211
Q ss_pred CCC---CHHHHHHHHHHHHHHHHHHHHHcCC---eEEEEcCcceecCCCCCCcCCCC
Q 024766 196 YKY---NPVKTIKTNVMGTLNMLGLAKRVGA---KFLLTSTSEVYGDPLEHPQKETY 246 (263)
Q Consensus 196 ~~~---~~~~~~~~Nv~gt~~ll~~a~~~~~---~iV~vSS~~vyg~~~~~~~~E~~ 246 (263)
..+ .....++.|+.+|.+++++++..+. ++|+.||+++||+....+.+|++
T Consensus 68 ~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~ 124 (298)
T 4b4o_A 68 RRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDS 124 (298)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTC
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccC
Confidence 111 2356689999999999999988764 58899999999998888999985
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=6e-18 Score=144.83 Aligned_cols=122 Identities=14% Similarity=0.090 Sum_probs=91.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|+.|+. +
T Consensus 4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (248)
T 2pnf_A 4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLV 83 (248)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 3578899999999999999999999999999999997544332222211 1456889999998762 2
Q ss_pred CCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vy 234 (263)
.++|+||||||......+ .+++++.+++|+.|+.++++++ ++.+. +||++||...+
T Consensus 84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~ 148 (248)
T 2pnf_A 84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGF 148 (248)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHH
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhc
Confidence 379999999997543322 2246788999999998877765 34454 99999997543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-17 Score=146.12 Aligned_cols=124 Identities=10% Similarity=0.010 Sum_probs=94.1
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------c
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~ 178 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|.. +
T Consensus 27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 106 (272)
T 1yb1_A 27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 106 (272)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence 34788999999999999999999999999999999997554433222221 2457889999998762 2
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
.++|+||||||........ +++++.+++|+.|+.++++++. +.+. +||++||...+.
T Consensus 107 g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~ 172 (272)
T 1yb1_A 107 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV 172 (272)
T ss_dssp CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC
T ss_pred CCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcC
Confidence 4799999999976543322 2456789999999888877763 3444 999999987765
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-18 Score=160.54 Aligned_cols=119 Identities=23% Similarity=0.223 Sum_probs=92.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccc---ccccCCCcEEEEccCCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV---EPILLEVDQIYHLACPAS 192 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~---~~~~~~iD~Vi~~Ag~~~ 192 (263)
+|+|+||||+||||++|+++|+++|++|++++|+..... .+.+|+. ...+.++|+||||||...
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~-------------~v~~d~~~~~~~~l~~~D~Vih~A~~~~ 213 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPG-------------KRFWDPLNPASDLLDGADVLVHLAGEPI 213 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTT-------------CEECCTTSCCTTTTTTCSEEEECCCC--
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcc-------------ceeecccchhHHhcCCCCEEEECCCCcc
Confidence 679999999999999999999999999999999765421 1334443 345678999999998754
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHHHHH-HHHcCC-eEEEEcCcceec-CCCCCCcCCCCC
Q 024766 193 PVHY-KYNPVKTIKTNVMGTLNMLGL-AKRVGA-KFLLTSTSEVYG-DPLEHPQKETYW 247 (263)
Q Consensus 193 ~~~~-~~~~~~~~~~Nv~gt~~ll~~-a~~~~~-~iV~vSS~~vyg-~~~~~~~~E~~~ 247 (263)
...+ ..++...+++|+.|+.+++++ +++.+. +||++||.++|| .....+++|+++
T Consensus 214 ~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~~ 272 (516)
T 3oh8_A 214 FGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEESE 272 (516)
T ss_dssp ---CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTSC
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCCC
Confidence 3332 345678899999999999999 555565 999999999999 566678889863
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.5e-18 Score=146.68 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=93.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.....+.....+ ...++.++.+|++|+. +
T Consensus 18 ~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 97 (274)
T 1ja9_A 18 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 97 (274)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999984332222222211 2457889999998762 2
Q ss_pred CCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vy 234 (263)
.++|+||||||....... .+++++.+++|+.|+.++++++.+. +.+||++||.+.+
T Consensus 98 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~ 160 (274)
T 1ja9_A 98 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAV 160 (274)
T ss_dssp SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGT
T ss_pred CCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcChHhc
Confidence 379999999997543322 2245788999999999999998764 3599999998776
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-17 Score=143.25 Aligned_cols=120 Identities=10% Similarity=0.056 Sum_probs=92.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-------eEEEEecCCccchhhhhhhc-CCCceEEEEccccccc----------
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI---------- 177 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-------~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~---------- 177 (263)
+|+++||||+|+||++++++|+++|+ +|++++|+.+...+...+.. ...++.++.+|++++.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV 81 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999 99999987544332222221 2457889999998862
Q ss_pred --cCCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 178 --LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 --~~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
+.++|+||||||......+ .+++++.+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~ 150 (244)
T 2bd0_A 82 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK 150 (244)
T ss_dssp HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred HhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcC
Confidence 2469999999997644322 234678899999999999988743 34 4999999987764
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-17 Score=142.20 Aligned_cols=138 Identities=13% Similarity=0.029 Sum_probs=100.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cC-
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LL- 179 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~- 179 (263)
++|+++||||+|+||++++++|+++| ++|++++|+.+...+ +.+. ...++.++.+|+++.. +.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~-l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE-LKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH-HHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHH-HHhc-cCCceEEEEeecCCHHHHHHHHHHHHHhcCC
Confidence 46899999999999999999999999 999999997655432 2222 3567899999998762 12
Q ss_pred -CCcEEEEccCCCC-CCCC----CCCHHHHHHHHHHHHHHHHHHHHHc----------------CCeEEEEcCcceecCC
Q 024766 180 -EVDQIYHLACPAS-PVHY----KYNPVKTIKTNVMGTLNMLGLAKRV----------------GAKFLLTSTSEVYGDP 237 (263)
Q Consensus 180 -~iD~Vi~~Ag~~~-~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----------------~~~iV~vSS~~vyg~~ 237 (263)
++|+||||||... ...+ .+++++.+++|+.|+.++++++... ..+||++||...+...
T Consensus 80 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~ 159 (250)
T 1yo6_A 80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITD 159 (250)
T ss_dssp GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTT
T ss_pred CCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccCC
Confidence 7999999999765 2222 2246778999999999998886432 3499999998665422
Q ss_pred CCCCcCCCCCCCCCCCCcCccccccC
Q 024766 238 LEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 238 ~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.. +. ++..+...|++||
T Consensus 160 ~~----~~-----~~~~~~~~Y~~sK 176 (250)
T 1yo6_A 160 NT----SG-----SAQFPVLAYRMSK 176 (250)
T ss_dssp CC----ST-----TSSSCBHHHHHHH
T ss_pred cc----cc-----cccCCccHHHHHH
Confidence 11 11 1224566788776
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=142.38 Aligned_cols=118 Identities=16% Similarity=0.178 Sum_probs=90.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. .+.++.+|++|+. +..+
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 78 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV----GAHPVVMDVADPASVERGFAEALAHLGRL 78 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----TCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc----CCEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 56789999999999999999999999999999998754433322221 2778899998762 2469
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc----CC-eEEEEcCcceec
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----GA-KFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~~-~iV~vSS~~vyg 235 (263)
|+||||||......+. +++++.+++|+.|+.++++++.+. +. +||++||.+.++
T Consensus 79 d~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 141 (245)
T 1uls_A 79 DGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG 141 (245)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccchhcC
Confidence 9999999975433322 246778999999999998887543 33 899999987444
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-18 Score=160.58 Aligned_cols=143 Identities=20% Similarity=0.135 Sum_probs=105.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch------hhhhhh-------cCCCceEEEEcccccc-c---
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK------DNLVHH-------FRNPRFELIRHDVVEP-I--- 177 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~------~~~~~~-------~~~~~v~~~~~Dv~~~-~--- 177 (263)
.+|+|+|||||||||++|+++|++.|++|++++|...... +.+... ....++.++.+|+.++ .
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~ 228 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVL 228 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCCC
T ss_pred CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCCC
Confidence 4679999999999999999999999999999999866321 111110 1246899999999984 2
Q ss_pred cCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC-----CCCCCcCCCCCCCCCC
Q 024766 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD-----PLEHPQKETYWGNVNP 252 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~-----~~~~~~~E~~~~~~~p 252 (263)
..++|+||||||... +..++...+++|+.|+.+++++|++.+++||++||.++ |. ....+++|+++. .+
T Consensus 229 ~~~~D~Vih~Aa~~~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~--~~ 302 (508)
T 4f6l_B 229 PENMDTIIHAGARTD---HFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISV-GTYFDIDTEDVTFSEADVY--KG 302 (508)
T ss_dssp SSCCSEEEECCCC-----------CCHHHHHHHHHHHHHHHHTTTCEEEEEEESCT-TSEECTTCSCCEECTTCSC--SS
T ss_pred ccCCCEEEECCceec---CCCCHHHHhhhHHHHHHHHHHHHHhCCCcEEEeCChhh-ccCCccCCcCccccccccc--cc
Confidence 357999999997643 34466777899999999999999985569999999998 43 345678888642 22
Q ss_pred CCcCccccccC
Q 024766 253 IGELLAATAVV 263 (263)
Q Consensus 253 ~~~~~~Y~~sK 263 (263)
..+.+.|+.||
T Consensus 303 ~~~~~~Y~~sK 313 (508)
T 4f6l_B 303 QLLTSPYTRSK 313 (508)
T ss_dssp BCCCSHHHHHH
T ss_pred ccCCCcHHHHH
Confidence 44778898876
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-18 Score=147.41 Aligned_cols=123 Identities=15% Similarity=0.104 Sum_probs=90.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...... ...++.++.+|+++.. +.
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 110 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFG 110 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 3678999999999999999999999999999999998655332222111 1456889999998762 23
Q ss_pred CCcEEEEccCCCCC-CCCC-----CCHHHHHHHHHHHHH----HHHHHHHHcC-CeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASP-VHYK-----YNPVKTIKTNVMGTL----NMLGLAKRVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~-~~~~-----~~~~~~~~~Nv~gt~----~ll~~a~~~~-~~iV~vSS~~vyg 235 (263)
.+|+||||||.... .... +++++.+++|+.|+. ++++.+++.+ .+||++||.+.+.
T Consensus 111 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~ 177 (279)
T 3ctm_A 111 TIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKI 177 (279)
T ss_dssp CCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSC
T ss_pred CCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhcc
Confidence 59999999997544 2222 235678999999955 5555565555 4999999987653
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.2e-18 Score=148.22 Aligned_cols=118 Identities=22% Similarity=0.259 Sum_probs=87.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----------cCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----------LLEV 181 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----------~~~i 181 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+ . ...++.++.+|++|+. +..+
T Consensus 6 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~----~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~i 80 (257)
T 3tl3_A 6 EIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDVVA----D-LGDRARFAAADVTDEAAVASALDLAETMGTL 80 (257)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHHHH----H-TCTTEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred eecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHHHH----h-cCCceEEEECCCCCHHHHHHHHHHHHHhCCC
Confidence 4678999999999999999999999999999999985332222 2 1457889999998762 2479
Q ss_pred cEEEEccCCCCCC--------CCCCCHHHHHHHHHHHHHHHHHHHHHc------------CC-eEEEEcCcceec
Q 024766 182 DQIYHLACPASPV--------HYKYNPVKTIKTNVMGTLNMLGLAKRV------------GA-KFLLTSTSEVYG 235 (263)
Q Consensus 182 D~Vi~~Ag~~~~~--------~~~~~~~~~~~~Nv~gt~~ll~~a~~~------------~~-~iV~vSS~~vyg 235 (263)
|+||||||..... ...+++++.+++|+.|+.++++++... +. +||++||.+.+.
T Consensus 81 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 155 (257)
T 3tl3_A 81 RIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFD 155 (257)
T ss_dssp EEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--C
T ss_pred CEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcC
Confidence 9999999964321 123357888999999999999987542 22 899999987663
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=145.62 Aligned_cols=123 Identities=20% Similarity=0.168 Sum_probs=93.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++++.....+.+.+.+ ...++..+.+|++++. +
T Consensus 24 ~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAF 103 (267)
T ss_dssp ---CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999999999999998665544433333222 3467889999998862 2
Q ss_pred CCCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
..+|+||||||......+.+ ++++.+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~ 167 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL 167 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHH
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhcc
Confidence 47999999999765444322 36778899999999999988654 23899999987654
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=141.60 Aligned_cols=121 Identities=16% Similarity=0.042 Sum_probs=91.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCce-EEEEccccccc-----------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF-ELIRHDVVEPI-----------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v-~~~~~Dv~~~~-----------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++ .++.+|++|.. +.+
T Consensus 8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 85 (254)
T 2wsb_A 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQEL--GAAVAARIVADVTDAEAMTAAAAEAEAVAP 85 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--GGGEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh--cccceeEEEEecCCHHHHHHHHHHHHhhCC
Confidence 367899999999999999999999999999999999755433322222 2345 78899998762 257
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
+|+||||||........+ ++++.+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 86 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~ 149 (254)
T 2wsb_A 86 VSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTI 149 (254)
T ss_dssp CCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred CcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhcc
Confidence 999999999765433322 35678899999988887765 34444 999999987664
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.1e-18 Score=149.27 Aligned_cols=123 Identities=14% Similarity=0.001 Sum_probs=93.1
Q ss_pred ccCCCCEEEEEcCCCh--HHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc-----------
Q 024766 112 IGRRRLRIVVTGGAGF--VGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI----------- 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~--IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~----------- 177 (263)
..+++|+++||||+|+ ||++++++|+++|++|++++|+... .+.+.+.. ...++.++.+|++|+.
T Consensus 27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 105 (293)
T 3grk_A 27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDAL-KKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEK 105 (293)
T ss_dssp CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHH-HHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHH-HHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHH
Confidence 3578999999999977 9999999999999999999987332 22222211 1235788999998862
Q ss_pred -cCCCcEEEEccCCCCC----CC----CCCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 178 -LLEVDQIYHLACPASP----VH----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 178 -~~~iD~Vi~~Ag~~~~----~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
+..+|+||||||.... .. ..+++++.+++|+.|+.++++++... +.+||++||.+.+.
T Consensus 106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~ 175 (293)
T 3grk_A 106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEK 175 (293)
T ss_dssp HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTS
T ss_pred hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhcc
Confidence 3479999999997641 12 12346788999999999999998654 23999999987664
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.1e-18 Score=146.49 Aligned_cols=123 Identities=18% Similarity=0.090 Sum_probs=91.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~------------~ 178 (263)
..++|+++||||+|+||++++++|+++|++|++++++.....+.+...+ ...++.++.+|++|.. +
T Consensus 23 m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 102 (272)
T 4e3z_A 23 MSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF 102 (272)
T ss_dssp -CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 3467899999999999999999999999999887544333333322222 3467899999998862 2
Q ss_pred CCCcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHHc--------CCeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAKRV--------GAKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~--------~~~iV~vSS~~vyg 235 (263)
..+|+||||||.... ..+ .+++++.+++|+.|+.++++++.+. +.+||++||.+.+.
T Consensus 103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 172 (272)
T 4e3z_A 103 GRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAIL 172 (272)
T ss_dssp SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHH
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhcc
Confidence 479999999997653 222 2346788999999999999887543 23899999976654
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-17 Score=142.24 Aligned_cols=122 Identities=14% Similarity=0.104 Sum_probs=83.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEe-cCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID-NFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~-r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
+++|+++||||+|+||++++++|+++|++|++++ |+.+...+...+.. ...++.++.+|++|+. +.
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFG 82 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999999999994 44333222222211 2457889999998862 23
Q ss_pred CCcEEEEccCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCc-ceec
Q 024766 180 EVDQIYHLACPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTS-EVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~-~vyg 235 (263)
++|+||||||...... ..+++++.+++|+.|+.++++++.+ .+. +||++||. +.|+
T Consensus 83 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~ 148 (247)
T 2hq1_A 83 RIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIG 148 (247)
T ss_dssp CCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC------
T ss_pred CCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccC
Confidence 7999999999754322 2345788999999999998887643 344 99999996 4565
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=142.06 Aligned_cols=118 Identities=12% Similarity=0.036 Sum_probs=89.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc---------CCCcEEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL---------LEVDQIYH 186 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~---------~~iD~Vi~ 186 (263)
||+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++.++.+|+++... ...|+|||
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~ 78 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCL--SNNVGYRARDLASHQEVEQLFEQLDSIPSTVVH 78 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC--SSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEE
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH--hhccCeEeecCCCHHHHHHHHHHHhhcCCEEEE
Confidence 478999999999999999999999999999999765544333322 4567889999987621 22499999
Q ss_pred ccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc----CCeEEEEcCcceec
Q 024766 187 LACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYG 235 (263)
Q Consensus 187 ~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~~~iV~vSS~~vyg 235 (263)
|||......+. +++++.+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 79 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~ 135 (230)
T 3guy_A 79 SAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ 135 (230)
T ss_dssp CCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS
T ss_pred eCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC
Confidence 99976544332 246778999999999999987543 33899999987664
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=144.27 Aligned_cols=118 Identities=18% Similarity=0.161 Sum_probs=90.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc------------c
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~------------~ 178 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 84 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF 84 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 567899999999999999999999999999999987554333222221 1346889999998862 2
Q ss_pred CCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH----HHc----CCeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLA----KRV----GAKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a----~~~----~~~iV~vSS~~vyg 235 (263)
..+|+||||||... .+++++.+++|+.|+.++.+.+ ++. +.+||++||.+.+.
T Consensus 85 g~id~lv~~Ag~~~----~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 145 (267)
T 2gdz_A 85 GRLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLM 145 (267)
T ss_dssp SCCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS
T ss_pred CCCCEEEECCCCCC----hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccC
Confidence 46899999998643 4578999999999877766554 333 23899999987765
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=148.86 Aligned_cols=121 Identities=15% Similarity=0.154 Sum_probs=99.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCC-----CeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCC---Cc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRG-----DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLE---VD 182 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G-----~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~---iD 182 (263)
+|+|+||||+||||++++++|+++| ++|++++|+..... ....+++++.+|+.|. .+.+ +|
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~------~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d 74 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW------HEDNPINYVQCDISDPDDSQAKLSPLTDVT 74 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC------CCSSCCEEEECCTTSHHHHHHHHTTCTTCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc------cccCceEEEEeecCCHHHHHHHHhcCCCCC
Confidence 4689999999999999999999999 99999999765432 1245688899999875 3445 99
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--CC-eEE-------EEcCcceecCC--CCCCcCCCCC
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV--GA-KFL-------LTSTSEVYGDP--LEHPQKETYW 247 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~--~~-~iV-------~vSS~~vyg~~--~~~~~~E~~~ 247 (263)
+|||+||... .++...+++|+.|+.+++++|++. +. ++| ++||.++||.. ...+++|+++
T Consensus 75 ~vih~a~~~~-----~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~ 146 (364)
T 2v6g_A 75 HVFYVTWANR-----STEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLP 146 (364)
T ss_dssp EEEECCCCCC-----SSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSC
T ss_pred EEEECCCCCc-----chHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCcccc
Confidence 9999998642 467889999999999999999987 55 887 79999999974 3467888863
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=147.19 Aligned_cols=122 Identities=11% Similarity=0.029 Sum_probs=92.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEe-cCCccchhhhhhh--cCCCceEEEEccccccc-------------
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID-NFFTGRKDNLVHH--FRNPRFELIRHDVVEPI------------- 177 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~-r~~~~~~~~~~~~--~~~~~v~~~~~Dv~~~~------------- 177 (263)
+++|+++||||+|+||++++++|+++|++|++++ |+.+...+...+. ....++.++.+|+++..
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV 86 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCB
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCccccccccccccccc
Confidence 5788999999999999999999999999999999 7654433322222 12457889999998765
Q ss_pred ----------------cCCCcEEEEccCCCCCCCC------------------CCCHHHHHHHHHHHHHHHHHHHH----
Q 024766 178 ----------------LLEVDQIYHLACPASPVHY------------------KYNPVKTIKTNVMGTLNMLGLAK---- 219 (263)
Q Consensus 178 ----------------~~~iD~Vi~~Ag~~~~~~~------------------~~~~~~~~~~Nv~gt~~ll~~a~---- 219 (263)
+..+|+||||||......+ .++++..+++|+.|+.++++++.
T Consensus 87 ~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~ 166 (291)
T 1e7w_A 87 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA 166 (291)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1369999999997543332 22356788999999999998874
Q ss_pred HcC-------CeEEEEcCcceec
Q 024766 220 RVG-------AKFLLTSTSEVYG 235 (263)
Q Consensus 220 ~~~-------~~iV~vSS~~vyg 235 (263)
+.+ .+||++||...+.
T Consensus 167 ~~~~~~~~~~g~Iv~isS~~~~~ 189 (291)
T 1e7w_A 167 GTPAKHRGTNYSIINMVDAMTNQ 189 (291)
T ss_dssp TSCGGGSCSCEEEEEECCTTTTS
T ss_pred hcCCCCCCCCcEEEEEechhhcC
Confidence 333 3899999987654
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-18 Score=148.48 Aligned_cols=120 Identities=14% Similarity=0.044 Sum_probs=91.9
Q ss_pred CCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC-CCceEEEEccccccc------------c
Q 024766 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 114 ~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~Dv~~~~------------~ 178 (263)
+++|+++||||+ |+||++++++|+++|++|++++|+.+ ..+...+... ...+.++.+|+++.. +
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL 82 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 568899999999 99999999999999999999999864 2222222211 123678899998762 2
Q ss_pred CCCcEEEEccCCCCC----CCC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCccee
Q 024766 179 LEVDQIYHLACPASP----VHY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~----~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vy 234 (263)
..+|+||||||.... ..+ .++++..+++|+.|+.++++++.+. +.+||++||.+.+
T Consensus 83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~ 149 (275)
T 2pd4_A 83 GSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGST 149 (275)
T ss_dssp SCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT
T ss_pred CCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhc
Confidence 469999999997543 121 2346788999999999999999765 3499999997654
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=147.33 Aligned_cols=122 Identities=18% Similarity=0.130 Sum_probs=92.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccc-c------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP-I------------ 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~-~------------ 177 (263)
..++|+++||||+|+||.+++++|+++|++|++++|+.++..+...++. ...++.++.+|+++. .
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~ 88 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH 88 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence 4678999999999999999999999999999999998665544444432 235799999999886 2
Q ss_pred cCCCcEEEEccCCCCCC----------------------------------CCCCCHHHHHHHHHHHHHHHHHHHHH---
Q 024766 178 LLEVDQIYHLACPASPV----------------------------------HYKYNPVKTIKTNVMGTLNMLGLAKR--- 220 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~----------------------------------~~~~~~~~~~~~Nv~gt~~ll~~a~~--- 220 (263)
+..+|+||||||+.... ...+.+++.+++|+.|+.++++++..
T Consensus 89 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~ 168 (311)
T 3o26_A 89 FGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQ 168 (311)
T ss_dssp HSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhc
Confidence 24799999999975321 01123567799999999999988743
Q ss_pred -cC-CeEEEEcCccee
Q 024766 221 -VG-AKFLLTSTSEVY 234 (263)
Q Consensus 221 -~~-~~iV~vSS~~vy 234 (263)
.+ .+||++||...+
T Consensus 169 ~~~~~~IV~isS~~~~ 184 (311)
T 3o26_A 169 LSDSPRIVNVSSSTGS 184 (311)
T ss_dssp TSSSCEEEEECCGGGS
T ss_pred cCCCCeEEEEecCCcc
Confidence 33 499999997654
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=146.29 Aligned_cols=123 Identities=10% Similarity=0.006 Sum_probs=94.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchh------hhhhhc--CCCceEEEEccccccc-------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD------NLVHHF--RNPRFELIRHDVVEPI------- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~------~~~~~~--~~~~v~~~~~Dv~~~~------- 177 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+ .....+ ...++.++.+|++|+.
T Consensus 3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~ 82 (274)
T 3e03_A 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVA 82 (274)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHH
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH
Confidence 4678999999999999999999999999999999998654221 111111 2567889999998862
Q ss_pred -----cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcceec
Q 024766 178 -----LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 -----~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~vyg 235 (263)
+..+|+||||||........ +++++.+++|+.|+.++++++.. .+ .+||++||...+.
T Consensus 83 ~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 154 (274)
T 3e03_A 83 ATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLN 154 (274)
T ss_dssp HHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCC
T ss_pred HHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcC
Confidence 34799999999976544332 24678899999999999998743 33 4999999986654
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=145.70 Aligned_cols=126 Identities=20% Similarity=0.123 Sum_probs=94.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILL 179 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~ 179 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+. ..+.+|+++. .+.
T Consensus 24 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~----------~~~~~Dv~~~~~~~~~~~~~~~~~g 93 (266)
T 3uxy_A 24 QGFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIAAD----------LHLPGDLREAAYADGLPGAVAAGLG 93 (266)
T ss_dssp --CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSCCS----------EECCCCTTSHHHHHHHHHHHHHHHS
T ss_pred hCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHhh----------hccCcCCCCHHHHHHHHHHHHHhcC
Confidence 357889999999999999999999999999999999865443221 2346788765 234
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceecCCCCCCcCCCCCCCC
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNV 250 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~ 250 (263)
++|+||||||......+. +++++.+++|+.|+.++++++ ++.+. +||++||...+.
T Consensus 94 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~--------------- 158 (266)
T 3uxy_A 94 RLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLR--------------- 158 (266)
T ss_dssp CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTB---------------
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCC---------------
Confidence 799999999986554322 346778899999999999987 44444 999999986653
Q ss_pred CCCCcCccccccC
Q 024766 251 NPIGELLAATAVV 263 (263)
Q Consensus 251 ~p~~~~~~Y~~sK 263 (263)
+......|++||
T Consensus 159 -~~~~~~~Y~asK 170 (266)
T 3uxy_A 159 -PGPGHALYCLTK 170 (266)
T ss_dssp -CCTTBHHHHHHH
T ss_pred -CCCCChHHHHHH
Confidence 233456787776
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-18 Score=146.91 Aligned_cols=122 Identities=14% Similarity=0.070 Sum_probs=92.1
Q ss_pred cCCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC-CCceEEEEccccccc------------
Q 024766 113 GRRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEPI------------ 177 (263)
Q Consensus 113 ~~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~Dv~~~~------------ 177 (263)
.+++|+++||||+ |+||++++++|+++|++|++++|+.+ ..+...+... ...+.++.+|++|+.
T Consensus 5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (261)
T 2wyu_A 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA 83 (261)
T ss_dssp CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 3578899999999 99999999999999999999998753 2222222211 123788999998862
Q ss_pred cCCCcEEEEccCCCCC----CC----CCCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASP----VH----YKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~----~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
+.++|+||||||.... .. ..+++++.+++|+.|+.++++++.+. +.+||++||.+.+.
T Consensus 84 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~ 152 (261)
T 2wyu_A 84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK 152 (261)
T ss_dssp HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS
T ss_pred cCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccC
Confidence 2379999999997542 11 12346788999999999999999765 34899999976653
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=145.52 Aligned_cols=121 Identities=16% Similarity=0.141 Sum_probs=93.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc------CCCceEEEEccccccc---------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF------RNPRFELIRHDVVEPI--------- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~------~~~~v~~~~~Dv~~~~--------- 177 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...++. ...++.++.+|+++..
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~ 94 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 94 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999987554433222221 2457899999998762
Q ss_pred ---cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH-----cCCeEEEEcCcce
Q 024766 178 ---LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR-----VGAKFLLTSTSEV 233 (263)
Q Consensus 178 ---~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~-----~~~~iV~vSS~~v 233 (263)
+..+|+||||||........ +++++.+++|+.|+.++++++.. .+.+||++||.+.
T Consensus 95 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~ 162 (303)
T 1yxm_A 95 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTK 162 (303)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCT
T ss_pred HHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeecc
Confidence 23699999999965433222 24577899999999999998754 2348999999873
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=144.74 Aligned_cols=123 Identities=13% Similarity=-0.009 Sum_probs=92.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|.. +.
T Consensus 41 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~ 120 (285)
T 2c07_A 41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK 120 (285)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence 4578899999999999999999999999999998876544333222221 2457889999998762 24
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
++|+||||||......+. +++++.+++|+.|+.++++++. +.+. +||++||.+.+.
T Consensus 121 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~ 185 (285)
T 2c07_A 121 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLT 185 (285)
T ss_dssp CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHH
T ss_pred CCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhcc
Confidence 699999999976443322 2467889999999888888764 3443 999999986553
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.72 E-value=9.2e-18 Score=150.29 Aligned_cols=124 Identities=14% Similarity=0.012 Sum_probs=93.9
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC----------Cccchhhhhhhc-CCCceEEEEccccccc---
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF----------FTGRKDNLVHHF-RNPRFELIRHDVVEPI--- 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~----------~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~--- 177 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+ .+...+...+.. ...++.++.+|++|..
T Consensus 23 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~ 102 (322)
T 3qlj_A 23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAA 102 (322)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHH
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence 35789999999999999999999999999999999886 222222222221 3457889999998862
Q ss_pred ---------cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc-----------CCeEEEEcCcce
Q 024766 178 ---------LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV-----------GAKFLLTSTSEV 233 (263)
Q Consensus 178 ---------~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~-----------~~~iV~vSS~~v 233 (263)
+..+|+||||||......+. +++++.+++|+.|+.++++++... +.+||++||...
T Consensus 103 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~ 182 (322)
T 3qlj_A 103 GLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAG 182 (322)
T ss_dssp HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHH
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHH
Confidence 24799999999986544322 346788999999999999986432 138999999766
Q ss_pred ec
Q 024766 234 YG 235 (263)
Q Consensus 234 yg 235 (263)
+.
T Consensus 183 ~~ 184 (322)
T 3qlj_A 183 LQ 184 (322)
T ss_dssp HH
T ss_pred cc
Confidence 53
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.1e-17 Score=142.45 Aligned_cols=122 Identities=12% Similarity=0.025 Sum_probs=93.2
Q ss_pred cCCCCEEEEEcCCCh--HHHHHHHHHHhCCCeEEEEecCCccchhhhhh---hcCCCceEEEEccccccc----------
Q 024766 113 GRRRLRIVVTGGAGF--VGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH---HFRNPRFELIRHDVVEPI---------- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~--IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~---~~~~~~v~~~~~Dv~~~~---------- 177 (263)
.+++|+++||||+|+ ||++++++|+++|++|++++|+... .+...+ .....++.++.+|++|+.
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 82 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERL-EKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIK 82 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG-HHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHH-HHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999977 9999999999999999999987432 222222 223347899999998862
Q ss_pred --cCCCcEEEEccCCCCC----CCC----CCCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCcceec
Q 024766 178 --LLEVDQIYHLACPASP----VHY----KYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYG 235 (263)
Q Consensus 178 --~~~iD~Vi~~Ag~~~~----~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~vyg 235 (263)
+..+|+||||||.... ... .++++..+++|+.|+.++++++.... .+||++||.+.+.
T Consensus 83 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~ 153 (266)
T 3oig_A 83 EQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGEL 153 (266)
T ss_dssp HHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTS
T ss_pred HHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccc
Confidence 2469999999997642 121 22457789999999999999987652 3899999987653
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-17 Score=149.29 Aligned_cols=122 Identities=11% Similarity=0.029 Sum_probs=92.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEe-cCCccchhhhhhh--cCCCceEEEEccccccc-------------
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID-NFFTGRKDNLVHH--FRNPRFELIRHDVVEPI------------- 177 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~-r~~~~~~~~~~~~--~~~~~v~~~~~Dv~~~~------------- 177 (263)
+++|+++||||+|+||++++++|+++|++|++++ |+.+...+...++ ....++.++.+|+++..
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 123 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV 123 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CCB
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhcccccccccccc
Confidence 6789999999999999999999999999999999 7654433322222 12457889999998765
Q ss_pred ----------------cCCCcEEEEccCCCCCCCC------------------CCCHHHHHHHHHHHHHHHHHHHH----
Q 024766 178 ----------------LLEVDQIYHLACPASPVHY------------------KYNPVKTIKTNVMGTLNMLGLAK---- 219 (263)
Q Consensus 178 ----------------~~~iD~Vi~~Ag~~~~~~~------------------~~~~~~~~~~Nv~gt~~ll~~a~---- 219 (263)
+..+|+||||||......+ .++++..+++|+.|+.++++++.
T Consensus 124 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~ 203 (328)
T 2qhx_A 124 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA 203 (328)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1369999999997543332 22356778999999999998864
Q ss_pred HcC-------CeEEEEcCcceec
Q 024766 220 RVG-------AKFLLTSTSEVYG 235 (263)
Q Consensus 220 ~~~-------~~iV~vSS~~vyg 235 (263)
+.+ .+||++||...+.
T Consensus 204 ~~~~~~~~~~g~IV~isS~~~~~ 226 (328)
T 2qhx_A 204 GTPAKHRGTNYSIINMVDAMTNQ 226 (328)
T ss_dssp HSCGGGSCSCEEEEEECCTTTTS
T ss_pred hcCCcCCCCCcEEEEECchhhcc
Confidence 333 3899999987654
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.71 E-value=3.5e-17 Score=141.03 Aligned_cols=112 Identities=18% Similarity=0.159 Sum_probs=85.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+ +..+.+|++|+. +..
T Consensus 12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~----------~~~~~~D~~~~~~~~~~~~~~~~~~g~ 81 (247)
T 1uzm_A 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG----------LFGVEVDVTDSDAVDRAFTAVEEHQGP 81 (247)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT----------SEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH----------hcCeeccCCCHHHHHHHHHHHHHHcCC
Confidence 4678999999999999999999999999999999987554321 113778988752 246
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vy 234 (263)
+|+||||||......+ .+++++.+++|+.|+.++++++.+ .+. +||++||...+
T Consensus 82 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 144 (247)
T 1uzm_A 82 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGL 144 (247)
T ss_dssp CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhc
Confidence 8999999997543322 234678899999999999988743 444 99999997654
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-17 Score=139.68 Aligned_cols=113 Identities=14% Similarity=0.148 Sum_probs=88.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----------ccCCCcEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----------ILLEVDQI 184 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----------~~~~iD~V 184 (263)
+|+++||||+|+||++++++|+++|++|++++|+.+.. .+.+ .+..+.+|+++. .+.++|+|
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~----~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~g~id~l 74 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEA----AQSL---GAVPLPTDLEKDDPKGLVKRALEALGGLHVL 74 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH----HHHH---TCEEEECCTTTSCHHHHHHHHHHHHTSCCEE
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----HHhh---CcEEEecCCchHHHHHHHHHHHHHcCCCCEE
Confidence 57999999999999999999999999999999976542 1222 267888998873 12469999
Q ss_pred EEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 185 YHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 185 i~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
|||||........ +++++.+++|+.|+.++++++. +.+. +||++||.+.+.
T Consensus 75 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 134 (239)
T 2ekp_A 75 VHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFT 134 (239)
T ss_dssp EECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcc
Confidence 9999975433322 2467889999999999988873 3344 999999988775
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.4e-17 Score=143.97 Aligned_cols=113 Identities=16% Similarity=0.181 Sum_probs=87.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
+++||+++||||+++||++++++|+++|++|++++|+..+. ..+...+.+|++++ .+..
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 78 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG---------LPEELFVEADLTTKEGCAIVAEATRQRLGG 78 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT---------SCTTTEEECCTTSHHHHHHHHHHHHHHTSS
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC---------CCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999999999864321 11223678899876 3467
Q ss_pred CcEEEEccCCCCCC--CC----CCCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCccee
Q 024766 181 VDQIYHLACPASPV--HY----KYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~--~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vy 234 (263)
+|++|||||..... .+ .+++++.+++|+.|++++++++. +.+. +||++||...+
T Consensus 79 iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~ 143 (261)
T 4h15_A 79 VDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRV 143 (261)
T ss_dssp CSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred CCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhc
Confidence 99999999964332 22 23578889999999999888763 3444 99999997544
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=138.64 Aligned_cols=111 Identities=18% Similarity=0.239 Sum_probs=91.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCCCceEEEEcccccccc-CC--CcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL-LE--VDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~-~~--iD~Vi~~Ag 189 (263)
++|+|+||||+|+||++++++|+++|+ +|++++|+... ...+++++.+|+.+... .+ +|+||||||
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~---------~~~~~~~~~~D~~~~~~~~~~~~d~vi~~a~ 74 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------EHPRLDNPVGPLAELLPQLDGSIDTAFCCLG 74 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------CCTTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc---------cCCCceEEeccccCHHHHHHhhhcEEEECee
Confidence 457999999999999999999999998 99999987654 12467788889887532 12 899999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGD 236 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~ 236 (263)
.... ...++++.+++|+.++.++++++++.+. +||++||.++|+.
T Consensus 75 ~~~~--~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~ 120 (215)
T 2a35_A 75 TTIK--EAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAK 120 (215)
T ss_dssp CCHH--HHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTT
T ss_pred eccc--cCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCCC
Confidence 5421 2356788999999999999999999886 8999999999873
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=144.38 Aligned_cols=118 Identities=20% Similarity=0.210 Sum_probs=90.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..+.++.+|++|+. +.+
T Consensus 6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 82 (270)
T 1yde_A 6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL---PGAVFILCDVTQEDDVKTLVSETIRRFGR 82 (270)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC---TTEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cCCeEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 367899999999999999999999999999999998755433322222 24788999998762 247
Q ss_pred CcEEEEccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCcce
Q 024766 181 VDQIYHLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEV 233 (263)
Q Consensus 181 iD~Vi~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~v 233 (263)
+|+||||||.... ..+ .+++++.+++|+.|+.++++++.+ .+.+||++||...
T Consensus 83 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~ 144 (270)
T 1yde_A 83 LDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVG 144 (270)
T ss_dssp CCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHH
T ss_pred CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccc
Confidence 9999999997542 222 124678899999999999998753 3459999999754
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=145.88 Aligned_cols=121 Identities=11% Similarity=-0.010 Sum_probs=91.3
Q ss_pred CCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC-CCceEEEEccccccc------------c
Q 024766 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 114 ~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~Dv~~~~------------~ 178 (263)
+++|+++||||+ |+||++++++|+++|++|++++|+.+ ..+...+... ...+.++.+|+++.. +
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 97 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENW 97 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 678999999999 99999999999999999999998763 2222222211 123678899998762 2
Q ss_pred CCCcEEEEccCCCCC----CCC----CCCHHHHHHHHHHHHHHHHHHHHHc----CCeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASP----VHY----KYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~----~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~iV~vSS~~vyg 235 (263)
.++|+||||||.... ..+ .+++++.+++|+.|+.++++++.+. +.+||++||.+.+.
T Consensus 98 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~ 166 (285)
T 2p91_A 98 GSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEK 166 (285)
T ss_dssp SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTS
T ss_pred CCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhcc
Confidence 479999999997543 111 2346788999999999999998654 24999999976653
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=142.31 Aligned_cols=113 Identities=20% Similarity=0.130 Sum_probs=88.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------c--C
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------L--L 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~--~ 179 (263)
.++|+++||||+|+||++++++|+++|++|++++|+.+... .....+.+|++|+. + .
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---------~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g 75 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA---------SASVIVKMTDSFTEQADQVTAEVGKLLGDQ 75 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS---------SEEEECCCCSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc---------CCcEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999999999765422 13456778987751 2 4
Q ss_pred CCcEEEEccCCCCCCCC-C----CCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHY-K----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~-~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
++|+||||||......+ . +++++.+++|+.|+.++++++.+. +.+||++||.+.+.
T Consensus 76 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 139 (241)
T 1dhr_A 76 KVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD 139 (241)
T ss_dssp CEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS
T ss_pred CCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHcc
Confidence 79999999997553333 2 245778999999999999998764 24999999987764
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.71 E-value=5.8e-17 Score=140.75 Aligned_cols=122 Identities=15% Similarity=0.068 Sum_probs=93.6
Q ss_pred cCCCCEEEEEcCCC--hHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh--cCCCceEEEEcccccc------------
Q 024766 113 GRRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEP------------ 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG--~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~Dv~~~------------ 176 (263)
.++||+++||||+| +||++++++|+++|++|++.+|+.+..++..... ....++..+.+|++++
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 82 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK 82 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence 57899999999876 9999999999999999999999866544333222 2456788999999886
Q ss_pred ccCCCcEEEEccCCCCCCC----CC----CCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCccee
Q 024766 177 ILLEVDQIYHLACPASPVH----YK----YNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVY 234 (263)
Q Consensus 177 ~~~~iD~Vi~~Ag~~~~~~----~~----~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~vy 234 (263)
.+..+|++|||||...... .. +++...+++|+.++..+.+.+.... .+||++||.+..
T Consensus 83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~ 151 (256)
T 4fs3_A 83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGE 151 (256)
T ss_dssp HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGT
T ss_pred HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccc
Confidence 3457999999999754322 11 2345667999999999988876542 389999997543
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-17 Score=145.27 Aligned_cols=121 Identities=16% Similarity=0.032 Sum_probs=91.1
Q ss_pred CCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------c
Q 024766 114 RRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 114 ~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~ 178 (263)
+++|+++||||+ |+||++++++|+++|++|++++|+. ...+...+.. ......++.+|++++. +
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW 85 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHc
Confidence 567899999999 9999999999999999999999976 2222222221 1123467889998762 2
Q ss_pred CCCcEEEEccCCCCC----C-----CCCCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASP----V-----HYKYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~----~-----~~~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
.++|+||||||.... . ...+++++.+++|+.|+.++++++.+. +.+||++||.+.+.
T Consensus 86 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~ 154 (265)
T 1qsg_A 86 PKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAER 154 (265)
T ss_dssp SSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS
T ss_pred CCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhcc
Confidence 368999999997542 1 122346788999999999999999765 24899999976653
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-17 Score=140.25 Aligned_cols=119 Identities=16% Similarity=0.165 Sum_probs=87.0
Q ss_pred CccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccCCCc
Q 024766 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVD 182 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~~iD 182 (263)
+....+++|+++||||+|+||++++++|+++|++|++++|+.+ ...+. ..+.++ +|+.+. .+.++|
T Consensus 12 ~~~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~----~~~~~---~~~~~~-~D~~~~~~~~~~~~~~iD 83 (249)
T 1o5i_A 12 HMELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE----LLKRS---GHRYVV-CDLRKDLDLLFEKVKEVD 83 (249)
T ss_dssp ----CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHT---CSEEEE-CCTTTCHHHHHHHSCCCS
T ss_pred hHHhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH----HHHhh---CCeEEE-eeHHHHHHHHHHHhcCCC
Confidence 4455688999999999999999999999999999999998642 12222 246666 888322 123799
Q ss_pred EEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
+||||||......+. +++++.+++|+.|+.++++++ ++.+. +||++||.+.|.
T Consensus 84 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 145 (249)
T 1o5i_A 84 ILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS 145 (249)
T ss_dssp EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcC
Confidence 999999975443322 246788999999988776654 44454 999999988775
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-17 Score=141.94 Aligned_cols=112 Identities=22% Similarity=0.217 Sum_probs=88.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------c--CC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------L--LE 180 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~--~~ 180 (263)
++|+++||||+|+||++++++|+++|++|++++|+.+... .....+.+|+++.. + .+
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~---------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~ 72 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA---------DSNILVDGNKNWTEQEQSILEQTASSLQGSQ 72 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS---------SEEEECCTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc---------cccEEEeCCCCCHHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999999765422 13456788987752 2 47
Q ss_pred CcEEEEccCCCCCCCC-C----CCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHY-K----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~-~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
+|+||||||......+ . +++++.+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 73 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~ 135 (236)
T 1ooe_A 73 VDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG 135 (236)
T ss_dssp EEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhcc
Confidence 9999999997543333 2 246788999999999999998764 23899999987663
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-17 Score=142.85 Aligned_cols=123 Identities=12% Similarity=-0.012 Sum_probs=93.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHh---CCCeEEEEecCCccchhhhhhhc---CCCceEEEEccccccc---------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLID---RGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPI--------- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~---~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~--------- 177 (263)
.+++|+++||||+|+||++++++|++ +|++|++++|+.+...+...+.. ...++.++.+|++++.
T Consensus 3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 82 (259)
T 1oaa_A 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV 82 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence 35688999999999999999999999 89999999997654433332221 1457889999998762
Q ss_pred -----cCCCc--EEEEccCCCCC--CCC-----CCCHHHHHHHHHHHHHHHHHHHHHc------C-CeEEEEcCcceec
Q 024766 178 -----LLEVD--QIYHLACPASP--VHY-----KYNPVKTIKTNVMGTLNMLGLAKRV------G-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 -----~~~iD--~Vi~~Ag~~~~--~~~-----~~~~~~~~~~Nv~gt~~ll~~a~~~------~-~~iV~vSS~~vyg 235 (263)
+..+| +||||||.... ..+ .+++++.+++|+.|+.++++++... + .+||++||.+.+.
T Consensus 83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~ 161 (259)
T 1oaa_A 83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQ 161 (259)
T ss_dssp HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTS
T ss_pred HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcC
Confidence 12478 99999997533 111 2346788999999999999998643 2 2799999987764
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.70 E-value=3.1e-17 Score=140.17 Aligned_cols=119 Identities=15% Similarity=0.051 Sum_probs=88.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEE-ecCCccchhhhhhhc-CCCceEEEEccccccc------------cCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-DNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLEV 181 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l-~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~i 181 (263)
+|+++||||+|+||++++++|+++|++|+++ +|+.+...+...+.. ...++.++.+|+++.. +.++
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI 80 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 5799999999999999999999999999985 565433222211111 1356888999998762 2369
Q ss_pred cEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCccee
Q 024766 182 DQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVY 234 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vy 234 (263)
|+||||||....... .+++++.+++|+.|+.++++++.+ .+. +||++||.+.+
T Consensus 81 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~ 142 (244)
T 1edo_A 81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGL 142 (244)
T ss_dssp SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHH
T ss_pred CEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhc
Confidence 999999997654322 234677899999999999988754 344 99999997554
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=5.6e-17 Score=142.48 Aligned_cols=123 Identities=13% Similarity=0.101 Sum_probs=92.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh--cCCCceEEEEccccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEPI------------L 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~Dv~~~~------------~ 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ....++.++.+|++|.. +
T Consensus 25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~ 104 (286)
T 1xu9_A 25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM 104 (286)
T ss_dssp GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 467899999999999999999999999999999999765443322221 12346889999998852 2
Q ss_pred CCCcEEEEc-cCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCcceec
Q 024766 179 LEVDQIYHL-ACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~-Ag~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vyg 235 (263)
.++|+|||| ||.......+ +++++.+++|+.|+.++++++.. .+.+||++||.+.+.
T Consensus 105 g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~ 169 (286)
T 1xu9_A 105 GGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKV 169 (286)
T ss_dssp TSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTS
T ss_pred CCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCccccc
Confidence 479999999 5654322222 23567899999999999888743 345999999987654
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.5e-17 Score=142.83 Aligned_cols=123 Identities=11% Similarity=-0.026 Sum_probs=92.2
Q ss_pred cccCCCCEEEEEcCCCh--HHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc----------
Q 024766 111 GIGRRRLRIVVTGGAGF--VGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI---------- 177 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~--IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~---------- 177 (263)
...+++|+++||||+|+ ||++++++|+++|++|++++|+. ..+.+.+.. ....+.++.+|+++..
T Consensus 21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~ 98 (280)
T 3nrc_A 21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ--FKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELG 98 (280)
T ss_dssp -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT--CHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch--HHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHH
Confidence 34578899999999955 99999999999999999999976 222222221 2235889999998862
Q ss_pred --cCCCcEEEEccCCCCCC---------CCCCCHHHHHHHHHHHHHHHHHHHHHc----CCeEEEEcCcceec
Q 024766 178 --LLEVDQIYHLACPASPV---------HYKYNPVKTIKTNVMGTLNMLGLAKRV----GAKFLLTSTSEVYG 235 (263)
Q Consensus 178 --~~~iD~Vi~~Ag~~~~~---------~~~~~~~~~~~~Nv~gt~~ll~~a~~~----~~~iV~vSS~~vyg 235 (263)
+..+|+||||||..... ...+++++.+++|+.|+.++++++... +.+||++||.+.+.
T Consensus 99 ~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~ 171 (280)
T 3nrc_A 99 KVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEK 171 (280)
T ss_dssp HHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTS
T ss_pred HHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecccccc
Confidence 34699999999976431 122346778999999999999987543 34999999987654
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.5e-17 Score=140.68 Aligned_cols=122 Identities=10% Similarity=0.035 Sum_probs=91.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC-Cccchhhhhhhc-CCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF-FTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~-~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~ 179 (263)
+++|+++||||+||||++++++|+++|++|++++|+ .+...+...+.. ...++.++.+|++|.. +.
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g 84 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFG 84 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 567899999999999999999999999999999998 444333222221 2457889999998862 23
Q ss_pred CCcEEEEccCC-CCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC------CeEEEEcCcceec
Q 024766 180 EVDQIYHLACP-ASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG------AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~-~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~------~~iV~vSS~~vyg 235 (263)
++|+||||||. ....... ++++..+++|+.|+.++++++.+ .+ .+||++||...+.
T Consensus 85 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~ 155 (258)
T 3afn_B 85 GIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHT 155 (258)
T ss_dssp SCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHH
T ss_pred CCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhcc
Confidence 79999999996 3322221 23677899999999999887532 22 5899999987664
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.6e-17 Score=141.25 Aligned_cols=115 Identities=18% Similarity=0.124 Sum_probs=85.3
Q ss_pred ccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------c
Q 024766 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------I 177 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~ 177 (263)
....+.+|+++||||+|+||++++++|+++|++|++++|+.+...+ ..+.+|++|. .
T Consensus 16 ~~~~~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~-----------~~~~~d~~d~~~v~~~~~~~~~~ 84 (251)
T 3orf_A 16 PRGSHMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD-----------HSFTIKDSGEEEIKSVIEKINSK 84 (251)
T ss_dssp ------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS-----------EEEECSCSSHHHHHHHHHHHHTT
T ss_pred ccccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc-----------cceEEEeCCHHHHHHHHHHHHHH
Confidence 3445668999999999999999999999999999999997654321 2456666654 2
Q ss_pred cCCCcEEEEccCCCCCCC-C----CCCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVH-Y----KYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~-~----~~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~vyg 235 (263)
+..+|+||||||...... . .+++++.+++|+.|+.++++++.... .+||++||...+.
T Consensus 85 ~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~ 150 (251)
T 3orf_A 85 SIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN 150 (251)
T ss_dssp TCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS
T ss_pred cCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc
Confidence 346899999999754332 1 23467889999999999999987642 3899999987653
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.2e-17 Score=140.03 Aligned_cols=119 Identities=10% Similarity=0.071 Sum_probs=86.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEE-ecCCccchhhhhhhc-CCCceEE-EEccccccc------------cCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-DNFFTGRKDNLVHHF-RNPRFEL-IRHDVVEPI------------LLE 180 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l-~r~~~~~~~~~~~~~-~~~~v~~-~~~Dv~~~~------------~~~ 180 (263)
+|+++||||+|+||++++++|+++|++|+++ +|+.+...+...+.. ...++.. +.+|+++.. +.+
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG 80 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999999999998 665443322222211 2345566 889998762 347
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vy 234 (263)
+|+||||||......+ .+++++.+++|+.|+.++++++ ++.+. +||++||...+
T Consensus 81 ~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~ 143 (245)
T 2ph3_A 81 LDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGI 143 (245)
T ss_dssp CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHH
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhc
Confidence 9999999997543322 2346788999999977766654 44554 99999997544
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-17 Score=139.81 Aligned_cols=114 Identities=14% Similarity=0.161 Sum_probs=89.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhC--CCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~--G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~ 187 (263)
++|+|+||||+|+||++++++|+++ |++|++++|+.....+ . ...+.++.+|+.|. .+.++|+||||
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~----~--~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ 76 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEK----I--GGEADVFIGDITDADSINPAFQGIDALVIL 76 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHH----T--TCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhh----c--CCCeeEEEecCCCHHHHHHHHcCCCEEEEe
Confidence 5789999999999999999999999 8999999986433221 1 34567888999875 45679999999
Q ss_pred cCCCCCCC-------------CCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCccee
Q 024766 188 ACPASPVH-------------YKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 188 Ag~~~~~~-------------~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vy 234 (263)
||...... ..+++...+++|+.++.++++++++.+. +||++||.+++
T Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~ 137 (253)
T 1xq6_A 77 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGT 137 (253)
T ss_dssp CCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTT
T ss_pred ccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCC
Confidence 98653211 1122345789999999999999998886 99999998775
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.3e-17 Score=141.29 Aligned_cols=122 Identities=21% Similarity=0.149 Sum_probs=93.0
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----------cCC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----------LLE 180 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----------~~~ 180 (263)
..+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+. ..++.++.+|+++.. +..
T Consensus 26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~ 103 (281)
T 3ppi_A 26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL--GNRAEFVSTNVTSEDSVLAAIEAANQLGR 103 (281)
T ss_dssp GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHTTSSE
T ss_pred hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--CCceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 4578899999999999999999999999999999999765544433333 457899999998862 236
Q ss_pred CcEEEEc-cCCCCCCCC------C---CCHHHHHHHHHHHHHHHHHHHHH----------cC-CeEEEEcCcceec
Q 024766 181 VDQIYHL-ACPASPVHY------K---YNPVKTIKTNVMGTLNMLGLAKR----------VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~-Ag~~~~~~~------~---~~~~~~~~~Nv~gt~~ll~~a~~----------~~-~~iV~vSS~~vyg 235 (263)
+|+|||| ||....... . +++++.+++|+.|+.++++++.. .+ .+||++||...+.
T Consensus 104 id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 179 (281)
T 3ppi_A 104 LRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYE 179 (281)
T ss_dssp EEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTS
T ss_pred CCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccC
Confidence 8999999 554332221 1 13688899999999999998742 12 3899999987664
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-17 Score=139.27 Aligned_cols=117 Identities=19% Similarity=0.155 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----------cCCCc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----------LLEVD 182 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----------~~~iD 182 (263)
+++|+++||||+|+||++++++|++ |+.|++++|+.+...+.. ....+..+.+|+++.. +.++|
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id 77 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALA----EIEGVEPIESDIVKEVLEEGGVDKLKNLDHVD 77 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHH----TSTTEEEEECCHHHHHHTSSSCGGGTTCSCCS
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHH----hhcCCcceecccchHHHHHHHHHHHHhcCCCC
Confidence 5688999999999999999999988 889999998654332221 2356889999997751 23699
Q ss_pred EEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHH----HcCCeEEEEcCcceec
Q 024766 183 QIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVYG 235 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~~~iV~vSS~~vyg 235 (263)
+||||||........+ ++++.+++|+.|+.++++++. +.+.+||++||.+.+.
T Consensus 78 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~ 138 (245)
T 3e9n_A 78 TLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAASGCVIYINSGAGNG 138 (245)
T ss_dssp EEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEC------
T ss_pred EEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEcCccccc
Confidence 9999999765444332 356789999999988888763 3346999999987765
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-17 Score=140.88 Aligned_cols=107 Identities=18% Similarity=0.109 Sum_probs=84.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----cc----CCCcEEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL----LEVDQIYH 186 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~----~~iD~Vi~ 186 (263)
||+|+||||+||||++++++|+++|++|++++|+.+.... .+.+|+.+. .+ .++|+|||
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------------~~~~D~~~~~~~~~~~~~~~~~~d~vi~ 68 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA------------DLSTPGGRETAVAAVLDRCGGVLDGLVC 68 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC------------CTTSHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc------------cccCCcccHHHHHHHHHHcCCCccEEEE
Confidence 4689999999999999999999999999999997654321 145676654 12 47999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEEcCcceecCC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVYGDP 237 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~----~-~~iV~vSS~~vyg~~ 237 (263)
|||.... ..+++..+++|+.|+.++++++.+. + .+||++||.++|+..
T Consensus 69 ~Ag~~~~---~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~ 121 (255)
T 2dkn_A 69 CAGVGVT---AANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPG 121 (255)
T ss_dssp CCCCCTT---SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTT
T ss_pred CCCCCCc---chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEecccccccc
Confidence 9986432 3568899999999999999987543 4 499999999988743
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.1e-17 Score=141.00 Aligned_cols=123 Identities=13% Similarity=0.085 Sum_probs=95.4
Q ss_pred ccCCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCCccc-hhhhhhhc--CCCceEEEEccccccc---------
Q 024766 112 IGRRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHHF--RNPRFELIRHDVVEPI--------- 177 (263)
Q Consensus 112 ~~~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~~~~-~~~~~~~~--~~~~v~~~~~Dv~~~~--------- 177 (263)
..+++|+++||||+ |+||.+++++|+++|++|++++|+.... .+...+.. ...++.++.+|+++..
T Consensus 16 ~~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~ 95 (267)
T 3gdg_A 16 LSLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDV 95 (267)
T ss_dssp HCCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHH
T ss_pred cCcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHH
Confidence 35789999999999 9999999999999999999999876654 33333221 2567889999998862
Q ss_pred ---cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCccee
Q 024766 178 ---LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVY 234 (263)
Q Consensus 178 ---~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vy 234 (263)
+..+|+||||||......+. +++++.+++|+.|+.++++++ ++.+ .+||++||.+.+
T Consensus 96 ~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~ 164 (267)
T 3gdg_A 96 VADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGH 164 (267)
T ss_dssp HHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT
T ss_pred HHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEcccccc
Confidence 34689999999976544332 346788999999999999987 3334 499999997654
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-17 Score=140.55 Aligned_cols=123 Identities=11% Similarity=0.018 Sum_probs=92.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc-hhhhhhhc-CCCceEEEEcccccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHHF-RNPRFELIRHDVVEPIL------------ 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~-~~~~~~~~-~~~~v~~~~~Dv~~~~~------------ 178 (263)
.+++|+++||||+|+||++++++|+++|++|++++++.... .+...+.. ...++..+.+|+.+...
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL 83 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999875543333 22222221 35678889999987521
Q ss_pred ------CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 179 ------LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 179 ------~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
..+|+||||||........ +++++.+++|+.|+.++++++... +.+||++||.+.+.
T Consensus 84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~ 153 (255)
T 3icc_A 84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRI 153 (255)
T ss_dssp HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTS
T ss_pred cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhcc
Confidence 2399999999975443332 235678899999999999998765 23899999987654
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-17 Score=138.13 Aligned_cols=112 Identities=18% Similarity=0.190 Sum_probs=88.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHh-CCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc----------cCCCcE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLID-RGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI----------LLEVDQ 183 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~-~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~----------~~~iD~ 183 (263)
++|+++||||+|+||++++++|++ .|+.|++++|..+.. ...+..+.+|++|+. ...+|+
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~---------~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id~ 73 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS---------AENLKFIKADLTKQQDITNVLDIIKNVSFDG 73 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC---------CTTEEEEECCTTCHHHHHHHHHHTTTCCEEE
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc---------cccceEEecCcCCHHHHHHHHHHHHhCCCCE
Confidence 578999999999999999999999 788999988765421 235688999998762 136999
Q ss_pred EEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCcceec
Q 024766 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYG 235 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~vyg 235 (263)
||||||........ +++++.+++|+.|+.++++++.+.. .+||++||...+.
T Consensus 74 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~ 132 (244)
T 4e4y_A 74 IFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI 132 (244)
T ss_dssp EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC
T ss_pred EEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc
Confidence 99999976543322 2467889999999999999987653 3899999987664
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.68 E-value=9.9e-17 Score=136.56 Aligned_cols=109 Identities=21% Similarity=0.211 Sum_probs=87.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----c------CCCcEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----L------LEVDQI 184 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~------~~iD~V 184 (263)
+|+++||||+|+||++++++|+++|++|++++|+.+ . ..+.++.+|++++. + ..+|+|
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-~----------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~l 70 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-G----------EDLIYVEGDVTREEDVRRAVARAQEEAPLFAV 70 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-S----------SSSEEEECCTTCHHHHHHHHHHHHHHSCEEEE
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-c----------cceEEEeCCCCCHHHHHHHHHHHHhhCCceEE
Confidence 679999999999999999999999999999998754 1 13478889998752 2 278999
Q ss_pred EEccCCCCCCCCC----C----CHHHHHHHHHHHHHHHHHHHHHc----C-------CeEEEEcCcceec
Q 024766 185 YHLACPASPVHYK----Y----NPVKTIKTNVMGTLNMLGLAKRV----G-------AKFLLTSTSEVYG 235 (263)
Q Consensus 185 i~~Ag~~~~~~~~----~----~~~~~~~~Nv~gt~~ll~~a~~~----~-------~~iV~vSS~~vyg 235 (263)
|||||........ + ++++.+++|+.|+.++++++.+. + .+||++||.+.+.
T Consensus 71 i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~ 140 (242)
T 1uay_A 71 VSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE 140 (242)
T ss_dssp EECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH
T ss_pred EEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc
Confidence 9999975443322 1 56788999999999999987542 1 1899999998776
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-17 Score=137.78 Aligned_cols=103 Identities=18% Similarity=0.126 Sum_probs=81.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc--------ccCCCcEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQIY 185 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~--------~~~~iD~Vi 185 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+ +|++|+ .+..+|+||
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-------------------~D~~~~~~v~~~~~~~g~id~lv 64 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-------------------LDISDEKSVYHYFETIGAFDHLI 64 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-------------------CCTTCHHHHHHHHHHHCSEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-------------------cCCCCHHHHHHHHHHhCCCCEEE
Confidence 56789999999999999999999999999999988643 566554 235799999
Q ss_pred EccCCCCC-CCC----CCCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCcceec
Q 024766 186 HLACPASP-VHY----KYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYG 235 (263)
Q Consensus 186 ~~Ag~~~~-~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~vyg 235 (263)
||||.... ... .+++++.+++|+.|+.++++++.+.. .+||++||...+.
T Consensus 65 ~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~ 122 (223)
T 3uce_A 65 VTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK 122 (223)
T ss_dssp ECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS
T ss_pred ECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc
Confidence 99997532 222 22467789999999999999987652 3899999987664
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-17 Score=138.72 Aligned_cols=113 Identities=12% Similarity=0.162 Sum_probs=87.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-----cC---CCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-----LL---EVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-----~~---~iD~Vi~~A 188 (263)
|+++||||+|+||++++++|+++ +|++++|+.+...+...+. .. .++.+|++|+. +. ++|+|||||
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~-~~---~~~~~D~~~~~~~~~~~~~~~~id~vi~~a 74 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREV-GA---RALPADLADELEAKALLEEAGPLDLLVHAV 74 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHH-TC---EECCCCTTSHHHHHHHHHHHCSEEEEEECC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhc-cC---cEEEeeCCCHHHHHHHHHhcCCCCEEEECC
Confidence 58999999999999999999999 9999998754433322222 22 78889998752 23 799999999
Q ss_pred CCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceec
Q 024766 189 CPASPVH----YKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 189 g~~~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg 235 (263)
|...... ..+++++.+++|+.|+.++++++++.+. +||++||..+|.
T Consensus 75 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~ 126 (207)
T 2yut_A 75 GKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYV 126 (207)
T ss_dssp CCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHH
T ss_pred CcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhcc
Confidence 9754332 2345788899999999999999965554 999999998875
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=143.64 Aligned_cols=120 Identities=21% Similarity=0.177 Sum_probs=89.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh-------cCCCceEEEEccccccc----------c
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-------FRNPRFELIRHDVVEPI----------L 178 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~-------~~~~~v~~~~~Dv~~~~----------~ 178 (263)
+|+|+||||+|+||++++++|+++|++|++++|+.....+..... ....++.++.+|+++.. .
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence 679999999999999999999999999988887644432211111 11357889999998862 1
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
..+|+||||||......+. +++++.+++|+.|+.++++++ ++.+. +||++||.+.+.
T Consensus 82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~ 147 (327)
T 1jtv_A 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLM 147 (327)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTS
T ss_pred CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCccccc
Confidence 3599999999975433322 246788999999999999985 33444 999999986653
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.6e-17 Score=138.92 Aligned_cols=105 Identities=13% Similarity=0.050 Sum_probs=83.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc--------cc-CCCcEEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------IL-LEVDQIYH 186 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~--------~~-~~iD~Vi~ 186 (263)
+|+++||||+|+||++++++|+++|++|++++|+.+...+ . +.+|+++. .+ ..+|+|||
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-----------~-~~~Dl~~~~~v~~~~~~~~~~id~lv~ 68 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-----------D-LSTAEGRKQAIADVLAKCSKGMDGLVL 68 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-----------C-TTSHHHHHHHHHHHHTTCTTCCSEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-----------c-cccCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 4789999999999999999999999999999987654321 0 45677654 12 56899999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
|||.... ...+++.+++|+.|+.++++++. +.+ .+||++||.+.+.
T Consensus 69 ~Ag~~~~---~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~ 119 (257)
T 1fjh_A 69 CAGLGPQ---TKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAH 119 (257)
T ss_dssp CCCCCTT---CSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGS
T ss_pred CCCCCCC---cccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhc
Confidence 9986531 23589999999999999999875 334 4999999998874
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-17 Score=135.36 Aligned_cols=102 Identities=22% Similarity=0.258 Sum_probs=80.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------cCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI--------LLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~--------~~~iD~Vi~~A 188 (263)
|+++||||+|+||++++++|+ +|++|++++|+.. .+.+|+.++. +.++|+|||||
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~----------------~~~~D~~~~~~~~~~~~~~~~~d~vi~~a 66 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG----------------DVTVDITNIDSIKKMYEQVGKVDAIVSAT 66 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS----------------SEECCTTCHHHHHHHHHHHCCEEEEEECC
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc----------------ceeeecCCHHHHHHHHHHhCCCCEEEECC
Confidence 379999999999999999999 9999999998643 3567777652 23589999999
Q ss_pred CCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 189 CPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 189 g~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
|........ +++++.+++|+.|+.++++++.+. +.+||++||...+.
T Consensus 67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS~~~~~ 120 (202)
T 3d7l_A 67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMED 120 (202)
T ss_dssp CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECCGGGTS
T ss_pred CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcchhhcC
Confidence 975433322 234677899999999999998776 45999999986654
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=9.6e-17 Score=138.78 Aligned_cols=121 Identities=17% Similarity=0.081 Sum_probs=93.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHh-CCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------cCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLID-RGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------LLE 180 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~-~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~~~ 180 (263)
++|+|+||||+||||++++++|++ +|++|++++|+.+...+...+.. ...++.++.+|+++.. +.+
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 82 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 578999999999999999999999 99999999997554333332221 2456889999998752 237
Q ss_pred CcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~vyg 235 (263)
+|+||||||....... .++++..+++|+.|+.++++++.+.. .+||++||...+.
T Consensus 83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~ 144 (276)
T 1wma_A 83 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVR 144 (276)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHH
T ss_pred CCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhc
Confidence 9999999997543322 23467889999999999999997753 3899999977663
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-16 Score=136.37 Aligned_cols=117 Identities=16% Similarity=0.110 Sum_probs=82.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEE-e--cCCccchhhhhhhcCCCceEEEEcccccc-------ccCCCcEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVI-D--NFFTGRKDNLVHHFRNPRFELIRHDVVEP-------ILLEVDQIY 185 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l-~--r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-------~~~~iD~Vi 185 (263)
+|+++||||+|+||++++++|+++|++|+++ + |+.+...+...+. ...++.+.+-.+. .+..+|+||
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~g~iD~lv 77 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN---PGTIALAEQKPERLVDATLQHGEAIDTIV 77 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS---TTEEECCCCCGGGHHHHHGGGSSCEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh---CCCcccCHHHHHHHHHHHHHHcCCCCEEE
Confidence 5799999999999999999999999999999 5 7654433322222 1233332222222 235799999
Q ss_pred EccCCCCC---CCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 186 HLACPASP---VHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 186 ~~Ag~~~~---~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
||||.... ..+. +++++.+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 78 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~ 139 (244)
T 1zmo_A 78 SNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKK 139 (244)
T ss_dssp ECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTS
T ss_pred ECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCC
Confidence 99997654 3322 2467789999999999988874 344 3999999987664
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=136.89 Aligned_cols=122 Identities=11% Similarity=-0.003 Sum_probs=90.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc-------------cC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI-------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~-------------~~ 179 (263)
+++|+++||||+|+||++++++|+++|++|++++|+.+...+...+.. ...++.++.+|++|+. +.
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g 82 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQG 82 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 568899999999999999999999999999999987554333222221 1356888999998761 45
Q ss_pred CCcEEEEccC--CC-----CCCC----CCCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 180 EVDQIYHLAC--PA-----SPVH----YKYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag--~~-----~~~~----~~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
.+|+|||||| .. .... ..++++..+++|+.|+.++.+++. +.+ .+||++||.+.+.
T Consensus 83 ~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 154 (260)
T 2qq5_A 83 RLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQ 154 (260)
T ss_dssp CCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTS
T ss_pred CceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcC
Confidence 7899999995 21 1111 223477889999999988877764 334 4999999987653
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-16 Score=139.00 Aligned_cols=121 Identities=12% Similarity=0.077 Sum_probs=92.2
Q ss_pred CCCCEEEEEcC--CChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cC
Q 024766 114 RRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 114 ~~~k~vlVTGa--tG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~ 179 (263)
+++|+++|||| +|+||++++++|+++|++|++++|+.+...+.+.+.. ..++.++.+|++++. +.
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 83 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAIG 83 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhc-CCCceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 57899999999 9999999999999999999999987654323333222 345778899998762 23
Q ss_pred ---CCcEEEEccCCCCC-----CCC----CCCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCcceec
Q 024766 180 ---EVDQIYHLACPASP-----VHY----KYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEVYG 235 (263)
Q Consensus 180 ---~iD~Vi~~Ag~~~~-----~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~vyg 235 (263)
.+|+||||||.... ..+ .+++++.+++|+.|+.++++++.+.- .+||++||.+.++
T Consensus 84 ~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~~~ 154 (269)
T 2h7i_A 84 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRA 154 (269)
T ss_dssp TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSC
T ss_pred CCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccccc
Confidence 79999999997541 122 22467789999999999999987542 3899999876543
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-16 Score=133.78 Aligned_cols=108 Identities=11% Similarity=0.194 Sum_probs=81.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYH 186 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~ 186 (263)
...+|+|+||||+|+||++++++|+++| ++|++++|+.+...+. ....+.++.+|++|+ .+.++|+|||
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~-----~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~ 94 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKP-----YPTNSQIIMGDVLNHAALKQAMQGQDIVYA 94 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSS-----CCTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhccc-----ccCCcEEEEecCCCHHHHHHHhcCCCEEEE
Confidence 3457899999999999999999999999 8999999875543221 235788999999886 4568999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLE 239 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~ 239 (263)
|||.. .. ...+.++++++++.+. +||++||.++|+....
T Consensus 95 ~a~~~-------~~-------~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~ 134 (236)
T 3qvo_A 95 NLTGE-------DL-------DIQANSVIAAMKACDVKRLIFVLSLGIYDEVPG 134 (236)
T ss_dssp ECCST-------TH-------HHHHHHHHHHHHHTTCCEEEEECCCCC------
T ss_pred cCCCC-------ch-------hHHHHHHHHHHHHcCCCEEEEEecceecCCCCc
Confidence 99741 11 1346689999998886 9999999999986433
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-16 Score=136.57 Aligned_cols=119 Identities=12% Similarity=0.114 Sum_probs=82.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc-------ccCCCcEEEEc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP-------ILLEVDQIYHL 187 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~-------~~~~iD~Vi~~ 187 (263)
+|+++||||+|+||++++++|+++|++|++++|+.+...+.. +.. ...++..++.+-.+. .+..+|+||||
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~l~~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lv~n 79 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE-AFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSN 79 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHH-HHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEE
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HHHhcCCcEEEECHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 478999999999999999999999999999999765443221 111 122333332211111 23579999999
Q ss_pred cCCC-CCCCC----CCCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 188 ACPA-SPVHY----KYNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 188 Ag~~-~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
||.. ....+ .+++++.+++|+.|+.++++++. +.+ .+||++||...+.
T Consensus 80 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~ 137 (254)
T 1zmt_A 80 DIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG 137 (254)
T ss_dssp CCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS
T ss_pred CCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCccccc
Confidence 9976 32222 22467889999999999988873 333 4999999987653
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=99.63 E-value=6.1e-16 Score=134.91 Aligned_cols=104 Identities=19% Similarity=0.338 Sum_probs=84.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhC--CCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~--G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag 189 (263)
|+|+||||+||||++++++|+++ |++|++++|+.....+ +. ...++++.+|+.|+ .+.++|+|||+||
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~-l~----~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAST-LA----DQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHH-HH----HTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhH-Hh----hcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 47999999999999999999999 9999999997554322 11 23578889999875 4567999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceec
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg 235 (263)
.. . . . ++|+.++.+++++|++.+. +||++||.++|.
T Consensus 76 ~~----~--~-~---~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~ 112 (287)
T 2jl1_A 76 PH----Y--D-N---TLLIVQHANVVKAARDAGVKHIAYTGYAFAEE 112 (287)
T ss_dssp CC----S--C-H---HHHHHHHHHHHHHHHHTTCSEEEEEEETTGGG
T ss_pred CC----c--C-c---hHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence 52 1 1 1 5899999999999999887 999999998874
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=5.8e-16 Score=138.74 Aligned_cols=120 Identities=16% Similarity=0.178 Sum_probs=84.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC---------Cccchhhhhhhc-CCCceEEEEcccccc------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF---------FTGRKDNLVHHF-RNPRFELIRHDVVEP------ 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~---------~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------ 176 (263)
.+++|+++||||+|+||++++++|+++|++|+++++. .+...+...++. .... ..+|+.+.
T Consensus 6 ~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~---~~~D~~~~~~~~~~ 82 (319)
T 1gz6_A 6 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK---AVANYDSVEAGEKL 82 (319)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE---EEEECCCGGGHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCe---EEEeCCCHHHHHHH
Confidence 4678999999999999999999999999999998653 222222122221 1112 23566554
Q ss_pred ------ccCCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCc-ceec
Q 024766 177 ------ILLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTS-EVYG 235 (263)
Q Consensus 177 ------~~~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~-~vyg 235 (263)
.+..+|+||||||+.....+ .++++..+++|+.|++++++++ ++.+ .+||++||. +.++
T Consensus 83 ~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~ 157 (319)
T 1gz6_A 83 VKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYG 157 (319)
T ss_dssp HHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccC
Confidence 23479999999997654332 2346788999999999998886 3344 399999996 4555
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.62 E-value=8.9e-16 Score=143.91 Aligned_cols=121 Identities=16% Similarity=0.022 Sum_probs=91.9
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------cC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------LL 179 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~~ 179 (263)
..+++|+++||||+|+||.+++++|+++|++|++++|+... +.+.+......+.++.+|++|.. +.
T Consensus 209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~--~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g 286 (454)
T 3u0b_A 209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAA--EDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHG 286 (454)
T ss_dssp STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGH--HHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHST
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccH--HHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcC
Confidence 34688999999999999999999999999999999885322 22222212224578999998862 23
Q ss_pred C-CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc----C-CeEEEEcCccee
Q 024766 180 E-VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----G-AKFLLTSTSEVY 234 (263)
Q Consensus 180 ~-iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~-~~iV~vSS~~vy 234 (263)
+ +|+||||||+.....+. ++++..+++|+.|+.++.+++... + .+||++||.+.+
T Consensus 287 ~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~ 351 (454)
T 3u0b_A 287 GKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGI 351 (454)
T ss_dssp TCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHH
T ss_pred CCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhC
Confidence 4 99999999986544322 346788999999999999998765 3 389999997554
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-15 Score=124.98 Aligned_cols=102 Identities=13% Similarity=0.209 Sum_probs=83.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHH-hCCCeEEEEecCCc-cchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFT-GRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll-~~G~~V~~l~r~~~-~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~A 188 (263)
+|+|+||||+|+||++++++|+ ++|++|++++|+.+ ...+.. .....+.++.+|++|+ .+.++|+|||||
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~a 81 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEI---IDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGA 81 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH---HTSTTEEEEECCTTCHHHHHHHHTTCSEEEESC
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhc---cCCCceEEEECCCCCHHHHHHHHcCCCEEEEcC
Confidence 5679999999999999999999 89999999998754 322211 0346789999999875 456899999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGD 236 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~ 236 (263)
|.. |+. +.++++++++.+. +||++||.++|+.
T Consensus 82 g~~---------------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~ 114 (221)
T 3r6d_A 82 MES---------------GSD-MASIVKALSRXNIRRVIGVSMAGLSGE 114 (221)
T ss_dssp CCC---------------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSC
T ss_pred CCC---------------Chh-HHHHHHHHHhcCCCeEEEEeeceecCC
Confidence 742 444 8899999998886 9999999999874
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-15 Score=147.45 Aligned_cols=125 Identities=15% Similarity=0.037 Sum_probs=80.8
Q ss_pred CCCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEec---------CCccchhhhhhhc-CCCceEEEEcccccc
Q 024766 107 RVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN---------FFTGRKDNLVHHF-RNPRFELIRHDVVEP 176 (263)
Q Consensus 107 ~~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r---------~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~ 176 (263)
+..+...+++|+++||||+|+||++++++|+++|++|++++| +.+...+...++. ....+ .+|+.+.
T Consensus 10 ~~~~~~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~D~~d~ 86 (613)
T 3oml_A 10 SSDGKLRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEA---VADYNSV 86 (613)
T ss_dssp -----CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCE---EECCCCG
T ss_pred CcccccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeE---EEEeCCH
Confidence 344556789999999999999999999999999999999987 3332222222221 12222 2455443
Q ss_pred ------------ccCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCccee
Q 024766 177 ------------ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 177 ------------~~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vy 234 (263)
.+..+|+||||||+.....+. ++++..+++|+.|+.++++++ ++.+. +||++||.+.+
T Consensus 87 ~~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~ 165 (613)
T 3oml_A 87 IDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGI 165 (613)
T ss_dssp GGHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHH
T ss_pred HHHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHc
Confidence 224699999999986544332 346788999999999999987 44443 99999996543
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-14 Score=138.72 Aligned_cols=123 Identities=11% Similarity=0.152 Sum_probs=90.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCe-EEEE-ecCCc-------------cchhhhhhhc-CCCceEEEEcccccc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVI-DNFFT-------------GRKDNLVHHF-RNPRFELIRHDVVEP 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~-V~~l-~r~~~-------------~~~~~~~~~~-~~~~v~~~~~Dv~~~ 176 (263)
...+++++||||+|+||.+++++|+++|++ |+++ +|+.. ...+...+.. ...++.++.+|++|.
T Consensus 248 ~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~ 327 (525)
T 3qp9_A 248 WQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDA 327 (525)
T ss_dssp SCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSH
T ss_pred ecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCH
Confidence 346789999999999999999999999997 5555 67632 1222222221 256789999999886
Q ss_pred c-----------cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHcC-----C-eEEEEcCcce-e
Q 024766 177 I-----------LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRVG-----A-KFLLTSTSEV-Y 234 (263)
Q Consensus 177 ~-----------~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~-----~-~iV~vSS~~v-y 234 (263)
. +..+|+||||||+....... ++++..+++|+.|+.++.+++.... . +||++||.+. +
T Consensus 328 ~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~ 407 (525)
T 3qp9_A 328 EAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIW 407 (525)
T ss_dssp HHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTT
T ss_pred HHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcC
Confidence 2 24589999999986554332 2367789999999999999987654 4 8999999654 4
Q ss_pred c
Q 024766 235 G 235 (263)
Q Consensus 235 g 235 (263)
|
T Consensus 408 g 408 (525)
T 3qp9_A 408 G 408 (525)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8e-15 Score=138.51 Aligned_cols=124 Identities=21% Similarity=0.336 Sum_probs=93.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCe-EEEEecCCccc--hhhh-hhhc-CCCceEEEEccccccc-----c-----
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTGR--KDNL-VHHF-RNPRFELIRHDVVEPI-----L----- 178 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~-V~~l~r~~~~~--~~~~-~~~~-~~~~v~~~~~Dv~~~~-----~----- 178 (263)
..+++++||||+|+||.+++++|+++|++ |++++|+.... .+.+ .+.. ...++.++.+|++|.. +
T Consensus 224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~ 303 (486)
T 2fr1_A 224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD 303 (486)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 46789999999999999999999999995 89999875421 1111 1111 3467899999998862 1
Q ss_pred -CCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCc-ceecCC
Q 024766 179 -LEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTS-EVYGDP 237 (263)
Q Consensus 179 -~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~-~vyg~~ 237 (263)
..+|+||||||....... .++++..+++|+.|+.+++++++..+. +||++||. +++|.+
T Consensus 304 ~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g~~ 369 (486)
T 2fr1_A 304 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAP 369 (486)
T ss_dssp TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCT
T ss_pred cCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCCCC
Confidence 247999999997654332 224567789999999999999988765 99999996 456543
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.6e-14 Score=124.86 Aligned_cols=101 Identities=16% Similarity=0.249 Sum_probs=82.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~ 190 (263)
|+|+||||||+||++++++|+++ |++|++++|+.++.... ....++++.+|+.|+ .+.++|+||||||.
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~-----~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDD-----WRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGG-----GBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHh-----hhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 46999999999999999999998 99999999976543221 235789999999886 46789999999975
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcc
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSE 232 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~ 232 (263)
... ...|+.++.+++++|++.++ +||++||.+
T Consensus 76 ~~~----------~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~ 108 (289)
T 3e48_A 76 IHP----------SFKRIPEVENLVYAAKQSGVAHIIFIGYYA 108 (289)
T ss_dssp CCS----------HHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred Ccc----------chhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence 321 13589999999999999986 999999954
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=137.82 Aligned_cols=120 Identities=16% Similarity=0.242 Sum_probs=90.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc---hhhhhhhc-CCCceEEEEcccccccc-----------C
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR---KDNLVHHF-RNPRFELIRHDVVEPIL-----------L 179 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~---~~~~~~~~-~~~~v~~~~~Dv~~~~~-----------~ 179 (263)
+++++||||+|+||.+++++|+++|+ +|++++|+.... .+...+.. ...++.++.+|++|+.. .
T Consensus 239 ~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~g 318 (496)
T 3mje_A 239 HGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPEDA 318 (496)
T ss_dssp CSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHhC
Confidence 48999999999999999999999999 788888763321 12122211 35689999999988621 2
Q ss_pred CCcEEEEccCCC-CCCCCC----CCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcc-eec
Q 024766 180 EVDQIYHLACPA-SPVHYK----YNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSE-VYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~-~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~-vyg 235 (263)
.+|+||||||+. ...... ++++..+++|+.|+.++.+++...+. +||++||.+ ++|
T Consensus 319 ~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g 381 (496)
T 3mje_A 319 PLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWG 381 (496)
T ss_dssp CEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTT
T ss_pred CCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCC
Confidence 589999999986 332222 23578899999999999999988765 999999954 455
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.55 E-value=6.5e-15 Score=129.48 Aligned_cols=110 Identities=17% Similarity=0.199 Sum_probs=86.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag 189 (263)
+|+|+||||+|+||++++++|+++| ++|++++|+.+..... . +....++++.+|+.|+ .+.++|+|||||+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~--~-l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAK--E-LRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHH--H-HHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHH--H-HHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 4789999999999999999999999 9999999976543211 1 1124578899999875 4568999999997
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGD 236 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~ 236 (263)
.... .....|+.++.+++++|++.+. +||++|+.++|+.
T Consensus 82 ~~~~--------~~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~ 121 (299)
T 2wm3_A 82 YWES--------CSQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKL 121 (299)
T ss_dssp HHHH--------TCHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHH
T ss_pred CCcc--------ccchHHHHHHHHHHHHHHHcCCCEEEEEcCcccccc
Confidence 3211 0135789999999999998886 9999888888863
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=7.5e-15 Score=127.76 Aligned_cols=100 Identities=16% Similarity=0.212 Sum_probs=78.0
Q ss_pred EEEEEcCCChHHHHHHHHHHhC--CCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~--G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~ 190 (263)
+|+||||+||||++++++|+++ |++|++++|+.....+. . ...+.++.+|+.|+ .+.++|+|||+||.
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~-~----~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~ 75 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQAL-A----AQGITVRQADYGDEAALTSALQGVEKLLLISSS 75 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHH-H----HTTCEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhh-h----cCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 4899999999999999999999 99999999976543221 1 23578889999875 45679999999974
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCccee
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vy 234 (263)
. + ..|+.++.+++++|++.+. +||++||.++|
T Consensus 76 ~--------~----~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~ 108 (286)
T 2zcu_A 76 E--------V----GQRAPQHRNVINAAKAAGVKFIAYTSLLHAD 108 (286)
T ss_dssp ------------------CHHHHHHHHHHHHTCCEEEEEEETTTT
T ss_pred C--------c----hHHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 2 0 2588999999999998886 99999999887
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-14 Score=137.67 Aligned_cols=123 Identities=17% Similarity=0.213 Sum_probs=92.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc---hhhhhhhc-CCCceEEEEccccccc-----c--CCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR---KDNLVHHF-RNPRFELIRHDVVEPI-----L--LEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~---~~~~~~~~-~~~~v~~~~~Dv~~~~-----~--~~i 181 (263)
..+++++||||+|+||.+++++|+++|+ +|++++|+.... .+...+.. ...++.++.+|++|.. + ..+
T Consensus 257 ~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~l 336 (511)
T 2z5l_A 257 QPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPP 336 (511)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999999999 588888875321 12222221 2457889999999862 2 359
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc-CC-eEEEEcCc-ceecC
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV-GA-KFLLTSTS-EVYGD 236 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~-~~-~iV~vSS~-~vyg~ 236 (263)
|+||||||+....... +.++..+++|+.|+.++.+++... +. +||++||. +++|.
T Consensus 337 d~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~ 398 (511)
T 2z5l_A 337 NAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGN 398 (511)
T ss_dssp SEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCC
T ss_pred cEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCC
Confidence 9999999976543322 235677899999999999998765 44 89999996 55663
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-14 Score=126.74 Aligned_cols=122 Identities=15% Similarity=0.078 Sum_probs=81.6
Q ss_pred cCCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCCc----------cchhhhhhhcCC---CceEEEEcc-----
Q 024766 113 GRRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFT----------GRKDNLVHHFRN---PRFELIRHD----- 172 (263)
Q Consensus 113 ~~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~~----------~~~~~~~~~~~~---~~v~~~~~D----- 172 (263)
.+++|+++||||+ |+||++++++|+++|++|++++|+.. ...+.+.+.... .....+.+|
T Consensus 5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (297)
T 1d7o_A 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDN 84 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCS
T ss_pred ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccc
Confidence 3678999999999 99999999999999999999986421 111111111110 012222222
Q ss_pred ---c----cc--------c------------ccCCCcEEEEccCCCC--CCCC----CCCHHHHHHHHHHHHHHHHHHHH
Q 024766 173 ---V----VE--------P------------ILLEVDQIYHLACPAS--PVHY----KYNPVKTIKTNVMGTLNMLGLAK 219 (263)
Q Consensus 173 ---v----~~--------~------------~~~~iD~Vi~~Ag~~~--~~~~----~~~~~~~~~~Nv~gt~~ll~~a~ 219 (263)
+ ++ + .+..+|+||||||... ...+ .+++++.+++|+.|+.++++++.
T Consensus 85 ~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~ 164 (297)
T 1d7o_A 85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL 164 (297)
T ss_dssp GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred hhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2 21 1 1246999999998642 1221 23467889999999999999987
Q ss_pred Hc---CCeEEEEcCccee
Q 024766 220 RV---GAKFLLTSTSEVY 234 (263)
Q Consensus 220 ~~---~~~iV~vSS~~vy 234 (263)
+. +.+||++||.+.+
T Consensus 165 ~~m~~~g~iv~isS~~~~ 182 (297)
T 1d7o_A 165 PIMNPGGASISLTYIASE 182 (297)
T ss_dssp GGEEEEEEEEEEECGGGT
T ss_pred HHhccCceEEEEeccccc
Confidence 64 2489999997654
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=5.9e-15 Score=132.59 Aligned_cols=120 Identities=17% Similarity=0.288 Sum_probs=89.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhh--hhcCCCceEEEEcccccc-----ccC--CCcEEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV--HHFRNPRFELIRHDVVEP-----ILL--EVDQIYH 186 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~--~~~~~~~v~~~~~Dv~~~-----~~~--~iD~Vi~ 186 (263)
+++|+||||||+||++++++|+++|++|++++|+.....+... ..+....++++.+|+.|. .+. ++|+|||
T Consensus 10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~ 89 (346)
T 3i6i_A 10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS 89 (346)
T ss_dssp -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence 5689999999999999999999999999999997633222221 112346789999999875 345 8999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
+||. .|+.++.+++++|++.+ + +||+ | +||. +.+|. +|..+...|+.+|
T Consensus 90 ~a~~---------------~n~~~~~~l~~aa~~~g~v~~~v~-S---~~g~----~~~e~-----~~~~p~~~y~~sK 140 (346)
T 3i6i_A 90 TVGG---------------ESILDQIALVKAMKAVGTIKRFLP-S---EFGH----DVNRA-----DPVEPGLNMYREK 140 (346)
T ss_dssp CCCG---------------GGGGGHHHHHHHHHHHCCCSEEEC-S---CCSS----CTTTC-----CCCTTHHHHHHHH
T ss_pred CCch---------------hhHHHHHHHHHHHHHcCCceEEee-c---ccCC----CCCcc-----CcCCCcchHHHHH
Confidence 9974 38889999999999998 6 6664 3 4552 23444 4556667777665
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=139.04 Aligned_cols=119 Identities=14% Similarity=0.101 Sum_probs=88.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccc-ccc---------ccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDV-VEP---------ILLEV 181 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv-~~~---------~~~~i 181 (263)
.+++|+++||||+++||++++++|+++|++|++.++.. ..+...++. ...++..+.+|+ .+. .+..+
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~i 396 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTI 396 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCC
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCC
Confidence 57899999999999999999999999999999988632 122222221 234566778888 432 34679
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcce
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEV 233 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~v 233 (263)
|+||||||+.....+. ++++..+++|+.|++++.+++. +.+ .+||++||.+.
T Consensus 397 DiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag 457 (604)
T 2et6_A 397 DILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSG 457 (604)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHH
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhh
Confidence 9999999976543332 3477889999999999988863 333 39999999654
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.9e-16 Score=139.87 Aligned_cols=96 Identities=28% Similarity=0.369 Sum_probs=76.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 195 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~~ 195 (263)
|+|+||||+||||++|+++|+++|+ +|++++|.. ..+ ..+..+.++|+|||+||....
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~--d~~-----------------~l~~~~~~~d~Vih~a~~~~~-- 59 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQT--KEE-----------------ELESALLKADFIVHLAGVNRP-- 59 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTC--CHH-----------------HHHHHHHHCSEEEECCCSBCT--
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCC--CHH-----------------HHHHHhccCCEEEECCcCCCC--
Confidence 4799999999999999999999999 999988740 111 112234469999999986543
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcCcceec
Q 024766 196 YKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYG 235 (263)
Q Consensus 196 ~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS~~vyg 235 (263)
.++...+++|+.++.+++++|++.+. +||++||.++|+
T Consensus 60 --~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~ 99 (369)
T 3st7_A 60 --EHDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ 99 (369)
T ss_dssp --TCSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC
Confidence 24455677999999999999998883 899999999987
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.5e-14 Score=137.40 Aligned_cols=123 Identities=16% Similarity=0.112 Sum_probs=83.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC---------ccchhhhhhhc-CCCceEEEEccccc-------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF---------TGRKDNLVHHF-RNPRFELIRHDVVE------- 175 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~---------~~~~~~~~~~~-~~~~v~~~~~Dv~~------- 175 (263)
.+++|+++||||+++||++++++|+++|++|++.+|.. +..++...++. ..........|+.+
T Consensus 5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~ 84 (604)
T 2et6_A 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVET 84 (604)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHH
Confidence 36789999999999999999999999999999998754 22222222221 12222222223321
Q ss_pred --cccCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcc-eec
Q 024766 176 --PILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSE-VYG 235 (263)
Q Consensus 176 --~~~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~-vyg 235 (263)
..+..+|+||||||+.....+. ++++..+++|+.|++++++++. +.+ .+||++||.+ .++
T Consensus 85 ~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~ 156 (604)
T 2et6_A 85 AVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYG 156 (604)
T ss_dssp HHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHC
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCC
Confidence 1346799999999975443332 3477889999999999988763 333 3999999964 444
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1e-13 Score=125.56 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=81.1
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcc-cccc-----ccCCCcEEEEccC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHD-VVEP-----ILLEVDQIYHLAC 189 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D-v~~~-----~~~~iD~Vi~~Ag 189 (263)
+|+|+||||||+||++++++|+++|++|++++|+.+.... ........++++.+| +.|+ .+.++|+||||++
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~--~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~ 82 (352)
T 1xgk_A 5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTT 82 (352)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhH--HHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCC
Confidence 5789999999999999999999999999999997654311 111123468889999 8775 3568999999996
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEcCcc
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSE 232 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-~iV~vSS~~ 232 (263)
... . ..|..+ .+++++|++.+ + +||++||.+
T Consensus 83 ~~~-----~------~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~ 115 (352)
T 1xgk_A 83 SQA-----G------DEIAIG-KDLADAAKRAGTIQHYIYSSMPD 115 (352)
T ss_dssp STT-----S------CHHHHH-HHHHHHHHHHSCCSEEEEEECCC
T ss_pred CCC-----c------HHHHHH-HHHHHHHHHcCCccEEEEeCCcc
Confidence 421 1 257777 99999999988 6 999999975
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.4e-14 Score=126.56 Aligned_cols=121 Identities=14% Similarity=0.054 Sum_probs=81.7
Q ss_pred CCCCEEEEEcC--CChHHHHHHHHHHhCCCeEEEEecCCc----------cchhhhhhhcCCC---ceEEEE--------
Q 024766 114 RRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFFT----------GRKDNLVHHFRNP---RFELIR-------- 170 (263)
Q Consensus 114 ~~~k~vlVTGa--tG~IG~~l~~~Ll~~G~~V~~l~r~~~----------~~~~~~~~~~~~~---~v~~~~-------- 170 (263)
+++|+++|||| +|+||++++++|+++|++|++++|+.. ...+...+..... ....+.
T Consensus 7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 86 (315)
T 2o2s_A 7 LRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDKP 86 (315)
T ss_dssp CTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSST
T ss_pred CCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhcccccccccccccccccccc
Confidence 67899999999 899999999999999999999986421 0111111111110 012332
Q ss_pred ----ccccc--------c------------ccCCCcEEEEccCCCC--CCCC----CCCHHHHHHHHHHHHHHHHHHHHH
Q 024766 171 ----HDVVE--------P------------ILLEVDQIYHLACPAS--PVHY----KYNPVKTIKTNVMGTLNMLGLAKR 220 (263)
Q Consensus 171 ----~Dv~~--------~------------~~~~iD~Vi~~Ag~~~--~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~ 220 (263)
+|+++ + .+..+|+||||||... ...+ .+++++.+++|+.|+.++++++..
T Consensus 87 ~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~ 166 (315)
T 2o2s_A 87 EDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGP 166 (315)
T ss_dssp TSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHST
T ss_pred chhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 23332 1 2346999999999642 1222 234678899999999999999865
Q ss_pred c---CCeEEEEcCccee
Q 024766 221 V---GAKFLLTSTSEVY 234 (263)
Q Consensus 221 ~---~~~iV~vSS~~vy 234 (263)
. +.+||++||.+.+
T Consensus 167 ~m~~~g~Iv~isS~~~~ 183 (315)
T 2o2s_A 167 IMNEGGSAVTLSYLAAE 183 (315)
T ss_dssp TEEEEEEEEEEEEGGGT
T ss_pred HHhcCCEEEEEeccccc
Confidence 4 2489999997654
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.48 E-value=7.2e-14 Score=125.30 Aligned_cols=120 Identities=8% Similarity=-0.010 Sum_probs=84.3
Q ss_pred CCCEEEEEcCCC--hHHHHHHHHHHhCCCeEEEEecCC---------ccchhhhhhhc----CCCceEEEEcccccc--c
Q 024766 115 RRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFF---------TGRKDNLVHHF----RNPRFELIRHDVVEP--I 177 (263)
Q Consensus 115 ~~k~vlVTGatG--~IG~~l~~~Ll~~G~~V~~l~r~~---------~~~~~~~~~~~----~~~~v~~~~~Dv~~~--~ 177 (263)
++|+++||||++ +||.+++++|+++|++|++.+++. +.......... ....+..+.+|+.+. .
T Consensus 1 ~~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~ 80 (329)
T 3lt0_A 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGG
T ss_pred CCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchh
Confidence 368999999875 999999999999999999777543 11111111111 123467788887654 2
Q ss_pred ------------------------------cCCCcEEEEccCCCC--CCCC----CCCHHHHHHHHHHHHHHHHHHHHHc
Q 024766 178 ------------------------------LLEVDQIYHLACPAS--PVHY----KYNPVKTIKTNVMGTLNMLGLAKRV 221 (263)
Q Consensus 178 ------------------------------~~~iD~Vi~~Ag~~~--~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (263)
+..+|+||||||+.. ...+ .+++++.+++|+.|+.++++++...
T Consensus 81 ~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~ 160 (329)
T 3lt0_A 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred hhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 235999999999642 2222 2246788999999999999998654
Q ss_pred C---CeEEEEcCccee
Q 024766 222 G---AKFLLTSTSEVY 234 (263)
Q Consensus 222 ~---~~iV~vSS~~vy 234 (263)
- .+||++||...+
T Consensus 161 m~~~g~Iv~isS~~~~ 176 (329)
T 3lt0_A 161 MKPQSSIISLTYHASQ 176 (329)
T ss_dssp EEEEEEEEEEECGGGT
T ss_pred HhhCCeEEEEeCcccc
Confidence 2 389999997654
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-14 Score=126.23 Aligned_cols=121 Identities=13% Similarity=0.040 Sum_probs=78.8
Q ss_pred CCCCEEEEEcC--CChHHHHHHHHHHhCCCeEEEEecCC-----------ccchh----------hhhhhcCCC-----c
Q 024766 114 RRRLRIVVTGG--AGFVGSHLVDKLIDRGDEVIVIDNFF-----------TGRKD----------NLVHHFRNP-----R 165 (263)
Q Consensus 114 ~~~k~vlVTGa--tG~IG~~l~~~Ll~~G~~V~~l~r~~-----------~~~~~----------~~~~~~~~~-----~ 165 (263)
+++|+++|||| +|+||++++++|+++|++|++++|+. +...+ .+.+.+... .
T Consensus 7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (319)
T 2ptg_A 7 LRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLVF 86 (319)
T ss_dssp CTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------CC
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccccc
Confidence 57899999999 89999999999999999999998642 11110 000110000 0
Q ss_pred eEEEEcc------------ccc--------c------------ccCCCcEEEEccCCCC--CCCC----CCCHHHHHHHH
Q 024766 166 FELIRHD------------VVE--------P------------ILLEVDQIYHLACPAS--PVHY----KYNPVKTIKTN 207 (263)
Q Consensus 166 v~~~~~D------------v~~--------~------------~~~~iD~Vi~~Ag~~~--~~~~----~~~~~~~~~~N 207 (263)
...+.+| +++ + .+..+|+||||||... ...+ .+++++.+++|
T Consensus 87 ~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN 166 (319)
T 2ptg_A 87 DKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSS 166 (319)
T ss_dssp SEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHH
T ss_pred cccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhHh
Confidence 2333332 222 1 1246999999999642 1221 22467889999
Q ss_pred HHHHHHHHHHHHHc---CCeEEEEcCccee
Q 024766 208 VMGTLNMLGLAKRV---GAKFLLTSTSEVY 234 (263)
Q Consensus 208 v~gt~~ll~~a~~~---~~~iV~vSS~~vy 234 (263)
+.|+.++++++... +.+||++||.+.+
T Consensus 167 ~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~ 196 (319)
T 2ptg_A 167 SYSFVSLLQHFLPLMKEGGSALALSYIASE 196 (319)
T ss_dssp THHHHHHHHHHGGGEEEEEEEEEEEECC--
T ss_pred hHHHHHHHHHHHHHHhcCceEEEEeccccc
Confidence 99999999998764 2489999997654
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-13 Score=121.77 Aligned_cols=101 Identities=21% Similarity=0.351 Sum_probs=77.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc-hhhhh--hhcCCCceEEEEcccccc-----ccCCCcEEEEc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLV--HHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~-~~~~~--~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~ 187 (263)
+|+|+||||||+||++++++|+++|++|++++|+.... .+... ..+....++++.+|+.|+ .+.++|+|||+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 83 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 83 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence 56899999999999999999999999999999975432 11111 111245688999999875 45689999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEE
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLL 227 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-~iV~ 227 (263)
|+..... .|+.++.+++++|++.+ + +||+
T Consensus 84 a~~~~~~-----------~~~~~~~~l~~aa~~~g~v~~~v~ 114 (313)
T 1qyd_A 84 LAGGVLS-----------HHILEQLKLVEAIKEAGNIKRFLP 114 (313)
T ss_dssp CCCSSSS-----------TTTTTHHHHHHHHHHSCCCSEEEC
T ss_pred Cccccch-----------hhHHHHHHHHHHHHhcCCCceEEe
Confidence 9854321 36788899999999998 6 7874
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-13 Score=124.03 Aligned_cols=121 Identities=12% Similarity=-0.035 Sum_probs=87.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHh-CCCeEEEEecCCccchhh-----------hhhh--cCCCceEEEEcccccc---
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLID-RGDEVIVIDNFFTGRKDN-----------LVHH--FRNPRFELIRHDVVEP--- 176 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~-~G~~V~~l~r~~~~~~~~-----------~~~~--~~~~~v~~~~~Dv~~~--- 176 (263)
..+|+++||||+++||.++++.|++ +|++|++++++.+...+. ..+. .....+..+.+|++++
T Consensus 45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v 124 (405)
T 3zu3_A 45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIK 124 (405)
T ss_dssp TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence 4678999999999999999999999 999999998875543211 1111 1355788899999886
Q ss_pred ---------ccCCCcEEEEccCCC-------------CCCC-------------------------CCCCHHHHHHHHHH
Q 024766 177 ---------ILLEVDQIYHLACPA-------------SPVH-------------------------YKYNPVKTIKTNVM 209 (263)
Q Consensus 177 ---------~~~~iD~Vi~~Ag~~-------------~~~~-------------------------~~~~~~~~~~~Nv~ 209 (263)
.+..+|+||||||.. .... ..++++.++++|..
T Consensus 125 ~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~ 204 (405)
T 3zu3_A 125 QLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGG 204 (405)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhch
Confidence 346799999999964 1111 12346778899988
Q ss_pred HHH-HHHHHHHHc-----CCeEEEEcCccee
Q 024766 210 GTL-NMLGLAKRV-----GAKFLLTSTSEVY 234 (263)
Q Consensus 210 gt~-~ll~~a~~~-----~~~iV~vSS~~vy 234 (263)
+.. .+++++... +.+||++||.+..
T Consensus 205 ~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~ 235 (405)
T 3zu3_A 205 EDWQMWIDALLDAGVLAEGAQTTAFTYLGEK 235 (405)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEEEEECCCCG
T ss_pred hHHHHHHHHHHHHhhhhCCcEEEEEeCchhh
Confidence 887 666665422 3489999997643
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-13 Score=125.49 Aligned_cols=120 Identities=13% Similarity=-0.029 Sum_probs=86.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHh-CCCeEEEEecCCccchhh-----------hhhh--cCCCceEEEEcccccc----
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLID-RGDEVIVIDNFFTGRKDN-----------LVHH--FRNPRFELIRHDVVEP---- 176 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~-~G~~V~~l~r~~~~~~~~-----------~~~~--~~~~~v~~~~~Dv~~~---- 176 (263)
.+|+++||||+++||.++++.|++ +|++|++++|+.+...+. ..+. .....+..+.+|++++
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v~ 139 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAARA 139 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHHH
Confidence 478999999999999999999999 999999999876543321 1111 1355788899999886
Q ss_pred --------cc-CCCcEEEEccCCC-------------CCCCC-------------------------CCCHHHHHHHHHH
Q 024766 177 --------IL-LEVDQIYHLACPA-------------SPVHY-------------------------KYNPVKTIKTNVM 209 (263)
Q Consensus 177 --------~~-~~iD~Vi~~Ag~~-------------~~~~~-------------------------~~~~~~~~~~Nv~ 209 (263)
.+ ..+|+||||||.. ..... .++++.++++|..
T Consensus 140 ~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~~ 219 (422)
T 3s8m_A 140 QVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGG 219 (422)
T ss_dssp HHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhch
Confidence 45 7799999999862 11111 1235677788877
Q ss_pred HHH-HHHHHHHHc-----CCeEEEEcCccee
Q 024766 210 GTL-NMLGLAKRV-----GAKFLLTSTSEVY 234 (263)
Q Consensus 210 gt~-~ll~~a~~~-----~~~iV~vSS~~vy 234 (263)
+.. .+++++... +.+||++||.+..
T Consensus 220 ~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~ 250 (422)
T 3s8m_A 220 QDWELWIDALEGAGVLADGARSVAFSYIGTE 250 (422)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEEEEEECCCG
T ss_pred hHHHHHHHHHHHHHHhhCCCEEEEEeCchhh
Confidence 775 667765432 2489999997543
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-13 Score=137.82 Aligned_cols=121 Identities=16% Similarity=0.197 Sum_probs=89.5
Q ss_pred cCCCCEEEEEcCCCh-HHHHHHHHHHhCCCeEEEEe-cCCccchhhhhhhc---C--CCceEEEEcccccc---------
Q 024766 113 GRRRLRIVVTGGAGF-VGSHLVDKLIDRGDEVIVID-NFFTGRKDNLVHHF---R--NPRFELIRHDVVEP--------- 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~-IG~~l~~~Ll~~G~~V~~l~-r~~~~~~~~~~~~~---~--~~~v~~~~~Dv~~~--------- 176 (263)
.+++|+++||||+|+ ||.+++++|+++|++|++++ |+.+...+...+.. . ..++.++.+|+++.
T Consensus 473 sL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~ 552 (1688)
T 2pff_A 473 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 552 (1688)
T ss_dssp CCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHH
T ss_pred ccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 467899999999998 99999999999999999984 54443333222221 1 34688899999876
Q ss_pred ---c-----cC-CCcEEEEccCCCCCC-CCC------CCHHHHHHHHHHHHHHHHHHHH--Hc----C-CeEEEEcCcce
Q 024766 177 ---I-----LL-EVDQIYHLACPASPV-HYK------YNPVKTIKTNVMGTLNMLGLAK--RV----G-AKFLLTSTSEV 233 (263)
Q Consensus 177 ---~-----~~-~iD~Vi~~Ag~~~~~-~~~------~~~~~~~~~Nv~gt~~ll~~a~--~~----~-~~iV~vSS~~v 233 (263)
. +. .+|+||||||+.... .+. +++++.+++|+.|+.+++++++ .. + .+||++||.+.
T Consensus 553 I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG 632 (1688)
T 2pff_A 553 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 632 (1688)
T ss_dssp HHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHh
Confidence 1 33 699999999976443 222 2357789999999999999873 22 2 38999999654
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=137.10 Aligned_cols=122 Identities=15% Similarity=0.187 Sum_probs=90.5
Q ss_pred cCCCCEEEEEcCCCh-HHHHHHHHHHhCCCeEEEEe-cCCccchhhhhhh---cC--CCceEEEEcccccc---------
Q 024766 113 GRRRLRIVVTGGAGF-VGSHLVDKLIDRGDEVIVID-NFFTGRKDNLVHH---FR--NPRFELIRHDVVEP--------- 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~-IG~~l~~~Ll~~G~~V~~l~-r~~~~~~~~~~~~---~~--~~~v~~~~~Dv~~~--------- 176 (263)
.+++|+++||||+|+ ||.++++.|+++|++|++++ |+.+...+...++ .. ..++.++.+|+++.
T Consensus 672 ~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~ 751 (1887)
T 2uv8_A 672 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEF 751 (1887)
T ss_dssp CCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHH
Confidence 468899999999998 99999999999999999985 4433332222221 11 45788999999876
Q ss_pred ---c-----cC-CCcEEEEccCCCCCC-CCC------CCHHHHHHHHHHHHHHHHHHHHHc------C-CeEEEEcCcce
Q 024766 177 ---I-----LL-EVDQIYHLACPASPV-HYK------YNPVKTIKTNVMGTLNMLGLAKRV------G-AKFLLTSTSEV 233 (263)
Q Consensus 177 ---~-----~~-~iD~Vi~~Ag~~~~~-~~~------~~~~~~~~~Nv~gt~~ll~~a~~~------~-~~iV~vSS~~v 233 (263)
. +. .+|+||||||+.... .+. +.++..+++|+.|+.+++++++.. + .+||++||...
T Consensus 752 i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag 831 (1887)
T 2uv8_A 752 IYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHG 831 (1887)
T ss_dssp HHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTT
T ss_pred HHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHh
Confidence 1 33 699999999976543 222 235788999999999999987322 1 38999999754
Q ss_pred e
Q 024766 234 Y 234 (263)
Q Consensus 234 y 234 (263)
+
T Consensus 832 ~ 832 (1887)
T 2uv8_A 832 T 832 (1887)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.39 E-value=4.9e-13 Score=117.48 Aligned_cols=95 Identities=19% Similarity=0.327 Sum_probs=73.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC-cc-----chhhhhhhcCCCceEEEEcccccc-----ccCCCcEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TG-----RKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQI 184 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~-~~-----~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~V 184 (263)
+++|+||||||+||++++++|+++|++|++++|+. .. ..+.+.. +....++++.+|+.|+ .+.++|+|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~-l~~~~v~~v~~D~~d~~~l~~~~~~~d~v 80 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDN-YQSLGVILLEGDINDHETLVKAIKQVDIV 80 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHH-HHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHH-HHhCCCEEEEeCCCCHHHHHHHHhCCCEE
Confidence 57899999999999999999999999999999975 11 1111111 1234688899999875 45679999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEE
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFL 226 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-~iV 226 (263)
|||||... +.++.+++++|++.+ + +||
T Consensus 81 i~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v 109 (307)
T 2gas_A 81 ICAAGRLL---------------IEDQVKIIKAIKEAGNVKKFF 109 (307)
T ss_dssp EECSSSSC---------------GGGHHHHHHHHHHHCCCSEEE
T ss_pred EECCcccc---------------cccHHHHHHHHHhcCCceEEe
Confidence 99997532 456789999999988 6 777
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.1e-13 Score=135.82 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=103.6
Q ss_pred Cccchhhhhhcccccccccc-ccCcccCCCCccccCCCCEEEEEcCCChHHHHHHHHHH-hCCC-eEEEEecCCcc---c
Q 024766 80 PFHALTANQQRQSFQFHRTS-SFGAKTGRVPVGIGRRRLRIVVTGGAGFVGSHLVDKLI-DRGD-EVIVIDNFFTG---R 153 (263)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll-~~G~-~V~~l~r~~~~---~ 153 (263)
+...+..+...+..+..... ......-..+. ....+++++||||+|+||.++++.|+ ++|+ +|++++|+... .
T Consensus 494 ~~~~~~l~~~~eA~~~l~~g~~~GKvVl~~~~-~~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~ 572 (795)
T 3slk_A 494 PVTAWDVRQAPEALRHLSQARHVGKLVLTMPP-VWDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGA 572 (795)
T ss_dssp CEEEEEGGGHHHHHHHHHHTCCCBEEEEECCC-CCCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTH
T ss_pred cceeEcHHHHHHHHHHHhcCCccceEEEecCc-ccccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHH
Confidence 45556666555554433211 11111111111 23468899999999999999999999 7999 58888887332 2
Q ss_pred hhhhhhhc-CCCceEEEEcccccccc-----------CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHH
Q 024766 154 KDNLVHHF-RNPRFELIRHDVVEPIL-----------LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGL 217 (263)
Q Consensus 154 ~~~~~~~~-~~~~v~~~~~Dv~~~~~-----------~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~ 217 (263)
.+...++. ...++.++.+|++|+.. ..+|+||||||+.....+. ++++..+++|+.|+.++.++
T Consensus 573 ~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~ 652 (795)
T 3slk_A 573 AELVAQLTAYGAEVSLQACDVADRETLAKVLASIPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLEL 652 (795)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 22222221 35678999999988621 1589999999986554432 34678899999999999999
Q ss_pred HHHcCCeEEEEcCcc-eec
Q 024766 218 AKRVGAKFLLTSTSE-VYG 235 (263)
Q Consensus 218 a~~~~~~iV~vSS~~-vyg 235 (263)
+...- +||++||.+ ..|
T Consensus 653 ~~~~l-~iV~~SS~ag~~g 670 (795)
T 3slk_A 653 IDPDV-ALVLFSSVSGVLG 670 (795)
T ss_dssp SCTTS-EEEEEEETHHHHT
T ss_pred HhhCC-EEEEEccHHhcCC
Confidence 84333 999999965 444
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=136.31 Aligned_cols=122 Identities=14% Similarity=0.130 Sum_probs=89.2
Q ss_pred cCCCCEEEEEcCCCh-HHHHHHHHHHhCCCeEEEEecC-Cccchhhhh---hhcC--CCceEEEEcccccc---------
Q 024766 113 GRRRLRIVVTGGAGF-VGSHLVDKLIDRGDEVIVIDNF-FTGRKDNLV---HHFR--NPRFELIRHDVVEP--------- 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~-IG~~l~~~Ll~~G~~V~~l~r~-~~~~~~~~~---~~~~--~~~v~~~~~Dv~~~--------- 176 (263)
.+++|+++||||+|+ ||.++++.|+++|++|++++++ .+...+... ..+. ..++.++.+|++|.
T Consensus 649 ~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~ 728 (1878)
T 2uv9_A 649 TFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNY 728 (1878)
T ss_dssp CCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHH
Confidence 468899999999999 9999999999999999998644 332222111 1122 45788999999876
Q ss_pred ---c---cC-CCcEEEEccCCCCCC-CCC------CCHHHHHHHHHHHHHHHHHHH--HHc----C-CeEEEEcCccee
Q 024766 177 ---I---LL-EVDQIYHLACPASPV-HYK------YNPVKTIKTNVMGTLNMLGLA--KRV----G-AKFLLTSTSEVY 234 (263)
Q Consensus 177 ---~---~~-~iD~Vi~~Ag~~~~~-~~~------~~~~~~~~~Nv~gt~~ll~~a--~~~----~-~~iV~vSS~~vy 234 (263)
. +. .+|+||||||+.... .+. ++++..+++|+.|+.++++++ ... + .+||++||.+.+
T Consensus 729 i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~ 807 (1878)
T 2uv9_A 729 IYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGT 807 (1878)
T ss_dssp HHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSS
T ss_pred HHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhc
Confidence 1 34 699999999976443 222 335788999999999988773 222 2 389999997543
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-12 Score=115.49 Aligned_cols=96 Identities=19% Similarity=0.377 Sum_probs=74.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~ 190 (263)
+++|+||||+|+||++++++|+++|++|++++|+.....+.+... ....++++.+|+.|+ .+.++|+|||+|+.
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l-~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~ 89 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEF-QSLGAIIVKGELDEHEKLVELMKKVDVVISALAF 89 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHH-HHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHh-hcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence 358999999999999999999999999999999865332222211 234688899999875 45689999999974
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEE
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLL 227 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-~iV~ 227 (263)
.. +.++.+++++|++.+ + +||+
T Consensus 90 ~~---------------~~~~~~l~~aa~~~g~v~~~v~ 113 (318)
T 2r6j_A 90 PQ---------------ILDQFKILEAIKVAGNIKRFLP 113 (318)
T ss_dssp GG---------------STTHHHHHHHHHHHCCCCEEEC
T ss_pred hh---------------hHHHHHHHHHHHhcCCCCEEEe
Confidence 21 456789999999987 6 7763
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-12 Score=117.42 Aligned_cols=120 Identities=8% Similarity=-0.111 Sum_probs=85.4
Q ss_pred CCCCEEEEEcCCChHHHH--HHHHHHhCCCeEEEEecCCccch-----------hhhhhhc--CCCceEEEEcccccc--
Q 024766 114 RRRLRIVVTGGAGFVGSH--LVDKLIDRGDEVIVIDNFFTGRK-----------DNLVHHF--RNPRFELIRHDVVEP-- 176 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~--l~~~Ll~~G~~V~~l~r~~~~~~-----------~~~~~~~--~~~~v~~~~~Dv~~~-- 176 (263)
..+|+++||||+++||.+ +++.|+++|++|++++|+..... +.+.+.. ....+..+.+|++++
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~ 137 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNET 137 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHH
Confidence 578899999999999999 99999999999999998754421 2222211 355788999999886
Q ss_pred ----------ccCCCcEEEEccCCC-------------CCCC-------------------------CCCCHHHHHHHHH
Q 024766 177 ----------ILLEVDQIYHLACPA-------------SPVH-------------------------YKYNPVKTIKTNV 208 (263)
Q Consensus 177 ----------~~~~iD~Vi~~Ag~~-------------~~~~-------------------------~~~~~~~~~~~Nv 208 (263)
.+..+|+||||||.. .... ..++++.++++|.
T Consensus 138 v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~ 217 (418)
T 4eue_A 138 KDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMG 217 (418)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhh
Confidence 235699999999864 1111 1123566677887
Q ss_pred HHHH-HHHHHHHHc-----CCeEEEEcCcce
Q 024766 209 MGTL-NMLGLAKRV-----GAKFLLTSTSEV 233 (263)
Q Consensus 209 ~gt~-~ll~~a~~~-----~~~iV~vSS~~v 233 (263)
.+.. .+++++... +.+||++||.+.
T Consensus 218 ~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~ 248 (418)
T 4eue_A 218 GEDWQEWCEELLYEDCFSDKATTIAYSYIGS 248 (418)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEeCchh
Confidence 7766 566665443 238999999754
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-12 Score=114.66 Aligned_cols=97 Identities=19% Similarity=0.390 Sum_probs=74.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc--hhhhh--hhcCCCceEEEEcccccc-----ccCCCcEEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR--KDNLV--HHFRNPRFELIRHDVVEP-----ILLEVDQIYH 186 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~--~~~~~--~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~ 186 (263)
+|+|+||||||+||++++++|+++|++|++++|+.... .+... ..+....++++.+|+.|+ .+.++|+|||
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 57899999999999999999999999999999975432 11111 112345688999999875 3467999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEE
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLL 227 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-~iV~ 227 (263)
+|+... +.++.+++++|++.+ + +||+
T Consensus 84 ~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v~ 111 (308)
T 1qyc_A 84 TVGSLQ---------------IESQVNIIKAIKEVGTVKRFFP 111 (308)
T ss_dssp CCCGGG---------------SGGGHHHHHHHHHHCCCSEEEC
T ss_pred CCcchh---------------hhhHHHHHHHHHhcCCCceEee
Confidence 997421 456789999999988 6 7763
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-12 Score=114.40 Aligned_cols=96 Identities=18% Similarity=0.337 Sum_probs=73.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC-cc----chhhhhhhcCCCceEEEEcccccc-----ccCCCcEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TG----RKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQI 184 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~-~~----~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~V 184 (263)
++|+|+||||+|+||++++++|+++|++|++++|+. .. ..+.+.. +....++++.+|+.|. .+.++|+|
T Consensus 3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~-~~~~~v~~v~~D~~d~~~l~~a~~~~d~v 81 (321)
T 3c1o_A 3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREE-FRSMGVTIIEGEMEEHEKMVSVLKQVDIV 81 (321)
T ss_dssp -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHH-HHHTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHH-hhcCCcEEEEecCCCHHHHHHHHcCCCEE
Confidence 357899999999999999999999999999999975 21 1111111 1234688999999875 45679999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEE
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFL 226 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-~iV 226 (263)
||||+... +.++.+++++|++.+ + +||
T Consensus 82 i~~a~~~~---------------~~~~~~l~~aa~~~g~v~~~v 110 (321)
T 3c1o_A 82 ISALPFPM---------------ISSQIHIINAIKAAGNIKRFL 110 (321)
T ss_dssp EECCCGGG---------------SGGGHHHHHHHHHHCCCCEEE
T ss_pred EECCCccc---------------hhhHHHHHHHHHHhCCccEEe
Confidence 99997431 556789999999988 6 777
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-11 Score=110.38 Aligned_cols=114 Identities=13% Similarity=0.069 Sum_probs=78.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-------eEEEEecCCc-c-chhhhhhhcCC-Cce--EEEEccccccccCCCcE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFT-G-RKDNLVHHFRN-PRF--ELIRHDVVEPILLEVDQ 183 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-------~V~~l~r~~~-~-~~~~~~~~~~~-~~v--~~~~~Dv~~~~~~~iD~ 183 (263)
.++|+||||+||||++++..|+++|+ +|+++++... . ......+.... ..+ ++...+...+.+.++|+
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D~ 83 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCCE
Confidence 35899999999999999999999986 8999987531 1 11111111111 111 12211222345678999
Q ss_pred EEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEcCc
Q 024766 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTSTS 231 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--~iV~vSS~ 231 (263)
|||+||..... ..+..+.+++|+.++.++++++++.+ . +++++|+.
T Consensus 84 Vih~Ag~~~~~--~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp 132 (327)
T 1y7t_A 84 ALLVGAAPRKA--GMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNP 132 (327)
T ss_dssp EEECCCCCCCT--TCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSS
T ss_pred EEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCc
Confidence 99999865432 35678899999999999999999875 3 77777764
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.6e-11 Score=134.34 Aligned_cols=120 Identities=17% Similarity=0.126 Sum_probs=84.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCe-EEEEecCCccch---hhhhhhc-CCCceEEEEccccccc-----------
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDE-VIVIDNFFTGRK---DNLVHHF-RNPRFELIRHDVVEPI----------- 177 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~-V~~l~r~~~~~~---~~~~~~~-~~~~v~~~~~Dv~~~~----------- 177 (263)
..+|+++||||+|+||.++++.|+++|++ |++++|+..+.. +.+.+.. ...++.++.+|++|..
T Consensus 1882 ~~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~ 1961 (2512)
T 2vz8_A 1882 PPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQ 1961 (2512)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHh
Confidence 47899999999999999999999999996 777788755432 1122211 3457888999998762
Q ss_pred cCCCcEEEEccCCCCCCCC----CCCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCcce
Q 024766 178 LLEVDQIYHLACPASPVHY----KYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEV 233 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~----~~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~v 233 (263)
+..+|+||||||+.....+ .+++++.+++|+.|+.++.+++.... .+||++||.+.
T Consensus 1962 ~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag 2024 (2512)
T 2vz8_A 1962 LGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSC 2024 (2512)
T ss_dssp HSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHH
T ss_pred cCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhh
Confidence 3469999999997543322 34567788999999999988876532 38999999654
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=5.1e-10 Score=123.30 Aligned_cols=108 Identities=14% Similarity=0.069 Sum_probs=78.6
Q ss_pred cCCCCEEEEEcCCCh-HHHHHHHHHHhCCCeEEEEecCCcc-----chhhhhhhc-CCCceEEEEcccccc---------
Q 024766 113 GRRRLRIVVTGGAGF-VGSHLVDKLIDRGDEVIVIDNFFTG-----RKDNLVHHF-RNPRFELIRHDVVEP--------- 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~-IG~~l~~~Ll~~G~~V~~l~r~~~~-----~~~~~~~~~-~~~~v~~~~~Dv~~~--------- 176 (263)
.+++|+++||||+++ ||.++++.|+++|++|++++|+.+. ..+...+.. ...++..+.+|++++
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~ 2212 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEW 2212 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHH
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHH
Confidence 478999999999999 9999999999999999999987665 222222221 234678889999775
Q ss_pred -------ccCCCcEEEEccCCC----CC---C-C-CCCC----HHHHHHHHHHHHHHHHHHHHH
Q 024766 177 -------ILLEVDQIYHLACPA----SP---V-H-YKYN----PVKTIKTNVMGTLNMLGLAKR 220 (263)
Q Consensus 177 -------~~~~iD~Vi~~Ag~~----~~---~-~-~~~~----~~~~~~~Nv~gt~~ll~~a~~ 220 (263)
.+..+|++|||||.. .. . . ..++ ++..+++|+.+++.+++.+..
T Consensus 2213 i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~ 2276 (3089)
T 3zen_D 2213 VGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSK 2276 (3089)
T ss_dssp HTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234699999999971 10 0 0 1122 345589999999998887643
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.5e-09 Score=78.87 Aligned_cols=92 Identities=21% Similarity=0.120 Sum_probs=68.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLA 188 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~A 188 (263)
.+++|+|+|+ |++|..+++.|++.| ++|++++|+.+...... ...+..+..|+.+. .+.++|+|||++
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~ 77 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-----RMGVATKQVDAKDEAGLAKALGGFDAVISAA 77 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-----TTTCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-----hCCCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 4578999999 999999999999999 89999998654332221 34566778888764 456899999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS 230 (263)
+.. ...++++++.+.+++++.+++
T Consensus 78 ~~~------------------~~~~~~~~~~~~g~~~~~~~~ 101 (118)
T 3ic5_A 78 PFF------------------LTPIIAKAAKAAGAHYFDLTE 101 (118)
T ss_dssp CGG------------------GHHHHHHHHHHTTCEEECCCS
T ss_pred Cch------------------hhHHHHHHHHHhCCCEEEecC
Confidence 521 135788888898886665554
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=98.91 E-value=8.2e-09 Score=92.58 Aligned_cols=113 Identities=12% Similarity=0.052 Sum_probs=78.1
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-------eEEEEecC----CccchhhhhhhcCC-Cce--EEEEccccccccCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNF----FTGRKDNLVHHFRN-PRF--ELIRHDVVEPILLEV 181 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-------~V~~l~r~----~~~~~~~~~~~~~~-~~v--~~~~~Dv~~~~~~~i 181 (263)
.++|+||||+|+||..++..|+..|. +|.++++. .++......+.... ..+ ++...+-..+.+.++
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~a 84 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDA 84 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCC
Confidence 35899999999999999999999885 78888876 22222212222111 111 222112223467889
Q ss_pred cEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEcC
Q 024766 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTST 230 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--~iV~vSS 230 (263)
|+|||+||... ....+..+.+..|+.++.++++.+++.+ . +||++|.
T Consensus 85 D~Vi~~ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN 134 (329)
T 1b8p_A 85 DVALLVGARPR--GPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN 134 (329)
T ss_dssp SEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred CEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence 99999998543 2334567788999999999999998874 3 7888887
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.88 E-value=9.6e-09 Score=92.06 Aligned_cols=111 Identities=12% Similarity=0.002 Sum_probs=77.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccchhhhhhhcC---CCceEEEEc-cccccccCCCcEEEEccC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFR---NPRFELIRH-DVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~~~~~~~~~---~~~v~~~~~-Dv~~~~~~~iD~Vi~~Ag 189 (263)
+++|+||||+|+||..++..|+++| .+|+++++..+ .....+... ...+..+.. +-..+.+.+.|+|||+||
T Consensus 8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag 85 (326)
T 1smk_A 8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG 85 (326)
T ss_dssp CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 3589999999999999999999998 78999987654 222211111 112333222 122345789999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS 230 (263)
..... .......+..|+.++.++++.+++.+. .+|+++|
T Consensus 86 ~~~~~--g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S 125 (326)
T 1smk_A 86 VPRKP--GMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS 125 (326)
T ss_dssp CCCCS--SCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred cCCCC--CCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence 54322 223346688999999999999998875 6666666
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.8e-08 Score=89.80 Aligned_cols=112 Identities=13% Similarity=0.076 Sum_probs=77.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEec--CCccchh---hhhhh--cCCCceEEEEcc-ccccccCCCcEEEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDN--FFTGRKD---NLVHH--FRNPRFELIRHD-VVEPILLEVDQIYH 186 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r--~~~~~~~---~~~~~--~~~~~v~~~~~D-v~~~~~~~iD~Vi~ 186 (263)
++|+||||+|+||..++..|+.+|. ++.++++ ..+.... .+.+. +....+++...| -..+.+.++|+|||
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~ 80 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence 3799999999999999999999885 6777887 4321211 11111 111234444433 24556889999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS 230 (263)
+||... .........+..|+.++.++++++++.+..+|+++|
T Consensus 81 ~Ag~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~~~~vlv~S 122 (313)
T 1hye_A 81 TSGVPR--KEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVIT 122 (313)
T ss_dssp CCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECS
T ss_pred CCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 998543 223455677999999999999999887644666555
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.9e-08 Score=89.21 Aligned_cols=110 Identities=15% Similarity=0.050 Sum_probs=77.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEec--CCccchh---hhhhhc-CCCceEEEEccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDN--FFTGRKD---NLVHHF-RNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r--~~~~~~~---~~~~~~-~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
++|+||||+|++|..++..|+..|. ++.++++ ..++.+. .+.+.. ....+.+...| .+.+.+.|+|||+|
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~--~~a~~~aDvVi~~a 78 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGG--YEDTAGSDVVVITA 78 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECC--GGGGTTCSEEEECC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCC--HHHhCCCCEEEEcC
Confidence 4799999999999999999999876 6888887 4332211 111111 12334444433 55688999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS 230 (263)
|... .....-...+..|+.++.++++++++.+. .+|+++|
T Consensus 79 g~~~--~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~S 119 (303)
T 1o6z_A 79 GIPR--QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (303)
T ss_dssp CCCC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred CCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 8543 22334567789999999999999999875 6666655
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.2e-09 Score=92.47 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=57.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~ 187 (263)
.+++|+++||||+|+||++++..|+++|++|++++|+.++..+...+......+.++.+|+++. .+.++|+||||
T Consensus 116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~ 195 (287)
T 1lu9_A 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA 195 (287)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEEC
Confidence 3578999999999999999999999999999999987554333222221111345666777653 45679999999
Q ss_pred cCCC
Q 024766 188 ACPA 191 (263)
Q Consensus 188 Ag~~ 191 (263)
||..
T Consensus 196 ag~g 199 (287)
T 1lu9_A 196 GAIG 199 (287)
T ss_dssp CCTT
T ss_pred CCcc
Confidence 9753
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.52 E-value=3.4e-07 Score=78.00 Aligned_cols=71 Identities=18% Similarity=0.336 Sum_probs=53.0
Q ss_pred CCCEEEEEcC----------------CChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc--
Q 024766 115 RRLRIVVTGG----------------AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-- 176 (263)
Q Consensus 115 ~~k~vlVTGa----------------tG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-- 176 (263)
+||+|+|||| +|++|.+++++|+++|++|+++.|....... ....++.+..+..++
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~~------~~~~~~~~~v~s~~em~ 75 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKPE------PHPNLSIREITNTKDLL 75 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCCC------CCTTEEEEECCSHHHHH
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc------CCCCeEEEEHhHHHHHH
Confidence 5789999999 9999999999999999999999986432110 123466666554432
Q ss_pred -----ccCCCcEEEEccCCC
Q 024766 177 -----ILLEVDQIYHLACPA 191 (263)
Q Consensus 177 -----~~~~iD~Vi~~Ag~~ 191 (263)
.+.++|++|||||+.
T Consensus 76 ~~v~~~~~~~Dili~aAAvs 95 (232)
T 2gk4_A 76 IEMQERVQDYQVLIHSMAVS 95 (232)
T ss_dssp HHHHHHGGGCSEEEECSBCC
T ss_pred HHHHHhcCCCCEEEEcCccc
Confidence 345799999999964
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3.8e-07 Score=77.42 Aligned_cols=72 Identities=17% Similarity=0.212 Sum_probs=51.2
Q ss_pred cCCCCEEEEEcC----------------CChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc
Q 024766 113 GRRRLRIVVTGG----------------AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP 176 (263)
Q Consensus 113 ~~~~k~vlVTGa----------------tG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~ 176 (263)
.++||+|+|||| +|+||.++++.|+++|++|+++++... .. ....++.+...-.+.
T Consensus 5 ~l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~-l~-------~~~g~~~~dv~~~~~ 76 (226)
T 1u7z_A 5 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVS-LP-------TPPFVKRVDVMTALE 76 (226)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCC-CC-------CCTTEEEEECCSHHH
T ss_pred CCCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcc-cc-------cCCCCeEEccCcHHH
Confidence 368999999999 699999999999999999999887542 11 011233332222111
Q ss_pred -------ccCCCcEEEEccCCCC
Q 024766 177 -------ILLEVDQIYHLACPAS 192 (263)
Q Consensus 177 -------~~~~iD~Vi~~Ag~~~ 192 (263)
.+.++|++|||||+..
T Consensus 77 ~~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 77 MEAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp HHHHHHHHGGGCSEEEECCBCCS
T ss_pred HHHHHHHhcCCCCEEEECCcccC
Confidence 3457999999999753
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=77.38 Aligned_cols=110 Identities=12% Similarity=0.032 Sum_probs=76.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccchhhhhhhcC---CCceEEEEc-cccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFR---NPRFELIRH-DVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~~~~~~~~~---~~~v~~~~~-Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
++|.|+||+|++|..++..|+..| .+|.++|+.. ......+... ..++....+ +-.++.+.+.|+||++||.
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~ 78 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV 78 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCc
Confidence 379999999999999999999988 6899999875 2222222211 112333322 2233457899999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
.... ..+-.+.+..|+..+..+++.+++.+. ++|++|.
T Consensus 79 ~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 79 PRKP--GMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp CCCT--TCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CCCC--CCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 4322 233345678999999999999888764 6777654
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=98.42 E-value=5.3e-07 Score=82.17 Aligned_cols=78 Identities=13% Similarity=0.002 Sum_probs=60.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHH-hCCCeEEEEecCCccchhh-----------hhhh--cCCCceEEEEcccccc---
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGRKDN-----------LVHH--FRNPRFELIRHDVVEP--- 176 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll-~~G~~V~~l~r~~~~~~~~-----------~~~~--~~~~~v~~~~~Dv~~~--- 176 (263)
..+|++|||||+++||.+.+..|+ +.|..|+++.+..+..... ..+. ..+.....+.+|++++
T Consensus 48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i 127 (401)
T 4ggo_A 48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK 127 (401)
T ss_dssp CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence 567999999999999999999998 6799999998765443221 1111 1366888999999876
Q ss_pred ---------ccCCCcEEEEccCCC
Q 024766 177 ---------ILLEVDQIYHLACPA 191 (263)
Q Consensus 177 ---------~~~~iD~Vi~~Ag~~ 191 (263)
.+.++|+|||++|..
T Consensus 128 ~~vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 128 AQVIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp HHHHHHHHHTTCCEEEEEECCCCS
T ss_pred HHHHHHHHHhcCCCCEEEEecccc
Confidence 446799999999864
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=8.3e-07 Score=79.68 Aligned_cols=112 Identities=16% Similarity=0.152 Sum_probs=74.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--e-----EEEEecCCc--cchhhhhhhc--CCCce-EEEEccccccccCCCcEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--E-----VIVIDNFFT--GRKDNLVHHF--RNPRF-ELIRHDVVEPILLEVDQI 184 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~-----V~~l~r~~~--~~~~~~~~~~--~~~~v-~~~~~Dv~~~~~~~iD~V 184 (263)
++|.||||+|+||..++..|+..|. + ++++|+... .......+.. ..... .+...+-..+.+.+.|+|
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDvV 83 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA 83 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCEE
Confidence 5899999999999999999998875 5 888887532 1222222211 11111 111222223467899999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC---eEEEEcC
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA---KFLLTST 230 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~---~iV~vSS 230 (263)
|++||... ....+..+.++.|+..+.++++.+++.+. +++.+|.
T Consensus 84 vitAg~pr--kpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 84 ILVGSMPR--RDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp EECCSCCC--CTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 99998542 22334456688999999999999998874 4666665
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-06 Score=66.99 Aligned_cols=99 Identities=14% Similarity=0.114 Sum_probs=65.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------cCCCcEEEEc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHL 187 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------~~~iD~Vi~~ 187 (263)
+++++|+|+|+ |.+|..+++.|.+.|++|++++++.+.... + .......+.+|..+.. ..++|+||++
T Consensus 4 ~~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~-~----~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~ 77 (144)
T 2hmt_A 4 IKNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNA-Y----ASYATHAVIANATEENELLSLGIRNFEYVIVA 77 (144)
T ss_dssp --CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHT-T----TTTCSEEEECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred CcCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-H----HHhCCEEEEeCCCCHHHHHhcCCCCCCEEEEC
Confidence 45678999997 999999999999999999999875432221 1 1123356677776541 4579999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCccee
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vy 234 (263)
++. +. ..|. .++..+++.+. ++|..++...+
T Consensus 78 ~~~--------~~----~~~~----~~~~~~~~~~~~~ii~~~~~~~~ 109 (144)
T 2hmt_A 78 IGA--------NI----QAST----LTTLLLKELDIPNIWVKAQNYYH 109 (144)
T ss_dssp CCS--------CH----HHHH----HHHHHHHHTTCSEEEEECCSHHH
T ss_pred CCC--------ch----HHHH----HHHHHHHHcCCCeEEEEeCCHHH
Confidence 852 11 2333 25556666665 77776665444
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.31 E-value=8.3e-07 Score=82.82 Aligned_cols=104 Identities=20% Similarity=0.171 Sum_probs=69.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag 189 (263)
++|+|+|+| +|++|+++++.|++.|++|++++|+.++..+. ... ...+..+.+|+.+. .+.++|+||||++
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~l-a~~--~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~ 77 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKL-SAG--VQHSTPISLDVNDDAALDAEVAKHDLVISLIP 77 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHT-TTT--CTTEEEEECCTTCHHHHHHHHTTSSEEEECCC
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHH-HHh--cCCceEEEeecCCHHHHHHHHcCCcEEEECCc
Confidence 367999998 89999999999999999999999864432222 111 12467778888753 3468999999997
Q ss_pred CCCCCCCCCCHHHHHH--HHH-------HHHHHHHHHHHHcCCeE
Q 024766 190 PASPVHYKYNPVKTIK--TNV-------MGTLNMLGLAKRVGAKF 225 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~--~Nv-------~gt~~ll~~a~~~~~~i 225 (263)
...... .....++ .|+ .++.+++++|++.|+++
T Consensus 78 ~~~~~~---i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~ 119 (450)
T 1ff9_A 78 YTFHAT---VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITV 119 (450)
T ss_dssp --CHHH---HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEE
T ss_pred cccchH---HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCeE
Confidence 532110 0112222 122 35778899999988753
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-06 Score=80.32 Aligned_cols=74 Identities=12% Similarity=0.183 Sum_probs=54.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC---eEEEEecCCccchhhhhhhc--CCCceEEEEcccccc-----ccCC--CcE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP-----ILLE--VDQ 183 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~---~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~-----~~~~--iD~ 183 (263)
|++|+|+|| |+||+++++.|++.|. +|++.+|+.++..+...... ...++..+.+|+.+. .+.+ +|+
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv 79 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI 79 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence 468999998 9999999999999983 89999987655443333221 123678888998764 2333 899
Q ss_pred EEEccCC
Q 024766 184 IYHLACP 190 (263)
Q Consensus 184 Vi~~Ag~ 190 (263)
||||+++
T Consensus 80 Vin~ag~ 86 (405)
T 4ina_A 80 VLNIALP 86 (405)
T ss_dssp EEECSCG
T ss_pred EEECCCc
Confidence 9999964
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.5e-06 Score=74.13 Aligned_cols=114 Identities=15% Similarity=0.156 Sum_probs=75.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhh---hhh-cCCCceEEEEccccccccCCCcEEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNL---VHH-FRNPRFELIRHDVVEPILLEVDQIYH 186 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~---~~~-~~~~~v~~~~~Dv~~~~~~~iD~Vi~ 186 (263)
.+.+++|.|+|++|+||..++..++..|. +|+++|+..++.+... .+. +...++.+ ..|. .+.+.+.|+||.
T Consensus 5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-t~d~-~~al~dADvVvi 82 (343)
T 3fi9_A 5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-TSDI-KEALTDAKYIVS 82 (343)
T ss_dssp CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-ESCH-HHHHTTEEEEEE
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-cCCH-HHHhCCCCEEEE
Confidence 34567999999999999999999999984 8999998654333222 221 11122221 1222 235788999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--e-EEEEcC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--K-FLLTST 230 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~-iV~vSS 230 (263)
+||.. .....+-.+.+..|+.....+++.+.+.+. . ++.+|.
T Consensus 83 taG~p--~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 83 SGGAP--RKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp CCC---------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred ccCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 99853 222344567789999999999999988764 3 455554
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.15 E-value=9.9e-06 Score=62.77 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=52.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------cCCCcEEEEcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHLA 188 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------~~~iD~Vi~~A 188 (263)
.+++++|+|+ |.+|..+++.|.++|++|++++++++..... . ...+.++.+|.+++. ..++|+||.+.
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~~~-~----~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~ 78 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIELL-E----DEGFDAVIADPTDESFYRSLDLEGVSAVLITG 78 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHHHH-H----HTTCEEEECCTTCHHHHHHSCCTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHH-H----HCCCcEEECCCCCHHHHHhCCcccCCEEEEec
Confidence 4578999996 9999999999999999999999865432221 1 124678889998763 35689999887
Q ss_pred C
Q 024766 189 C 189 (263)
Q Consensus 189 g 189 (263)
+
T Consensus 79 ~ 79 (141)
T 3llv_A 79 S 79 (141)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.09 E-value=2e-05 Score=60.38 Aligned_cols=94 Identities=21% Similarity=0.211 Sum_probs=61.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccCCCcEEEEccC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLAC 189 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~~iD~Vi~~Ag 189 (263)
+++|+|+|+ |.+|..+++.|.+.|++|++++++.+... .+... ..+..+.+|..+. .+.++|+||++.+
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~-~~~~~---~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~ 78 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICK-KASAE---IDALVINGDCTKIKTLEDAGIEDADMYIAVTG 78 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHH-HHHHH---CSSEEEESCTTSHHHHHHTTTTTCSEEEECCS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHH-HHHHh---cCcEEEEcCCCCHHHHHHcCcccCCEEEEeeC
Confidence 468999985 99999999999999999999998644322 12211 1345667776543 2457999999983
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCc
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTS 231 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~ 231 (263)
. . ..|. .+...++..+. ++|..++.
T Consensus 79 ~---------~----~~~~----~~~~~~~~~~~~~ii~~~~~ 104 (140)
T 1lss_A 79 K---------E----EVNL----MSSLLAKSYGINKTIARISE 104 (140)
T ss_dssp C---------H----HHHH----HHHHHHHHTTCCCEEEECSS
T ss_pred C---------c----hHHH----HHHHHHHHcCCCEEEEEecC
Confidence 1 1 2332 34556666664 67665543
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=4.3e-05 Score=68.27 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=77.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhh---hhhcC--CCceEEEEccccccccCCCcEEEEc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNL---VHHFR--NPRFELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~---~~~~~--~~~v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
.+++|.|+|+ |.+|..++..|+..|. +|++++++.++.+... .+... ...+.+...| ...+.+.|+||.+
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~--~~a~~~aDvVvi~ 80 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT--YEDCKDADIVCIC 80 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC--GGGGTTCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc--HHHhCCCCEEEEe
Confidence 3568999995 9999999999999987 8999998654433322 22111 1234444333 2467889999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
||.. .....+-.+.+..|......+++.+.+.+. .++.+|.
T Consensus 81 ag~p--~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 81 AGAN--QKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp CSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred cccC--CCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 9853 222345567789999999999999988764 5555554
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.2e-05 Score=69.79 Aligned_cols=76 Identities=14% Similarity=0.122 Sum_probs=51.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc-CCCcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL-LEVDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~-~~iD~Vi~~Ag~~ 191 (263)
.+++|+++|+|+ |++|++++..|++.|.+|++++|+.++..+...+.-....+.. .|.. ... .++|+||||++..
T Consensus 116 ~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~--~~~~-~~~~~~~DivVn~t~~~ 191 (271)
T 1nyt_A 116 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQA--LSMD-ELEGHEFDLIINATSSG 191 (271)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEE--CCSG-GGTTCCCSEEEECCSCG
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeE--ecHH-HhccCCCCEEEECCCCC
Confidence 457899999997 8999999999999999999998875543332222111112322 2321 111 5799999999854
Q ss_pred C
Q 024766 192 S 192 (263)
Q Consensus 192 ~ 192 (263)
.
T Consensus 192 ~ 192 (271)
T 1nyt_A 192 I 192 (271)
T ss_dssp G
T ss_pred C
Confidence 3
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00015 Score=64.35 Aligned_cols=111 Identities=15% Similarity=0.075 Sum_probs=76.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhC-C--CeEEEEecCCccchhhhhhhcCC-CceEEEE--ccccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDR-G--DEVIVIDNFFTGRKDNLVHHFRN-PRFELIR--HDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~-G--~~V~~l~r~~~~~~~~~~~~~~~-~~v~~~~--~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
++|.|+||+|.||..++..|..+ + .+++++++.. .......++... ....+.. .+-....+.+.|+||-+||.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~ 79 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC
Confidence 47999999999999999999876 4 4899998865 333333222221 2222221 22234567899999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
. .....+-.+.++.|..-...+.+.+.+.+. .++.+|.
T Consensus 80 ~--rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 80 A--RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp S--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred C--CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 3 223445678899999999999999888764 5666654
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=3.7e-06 Score=69.03 Aligned_cols=37 Identities=16% Similarity=0.112 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.+++|+|+||+|+||..+++.+...|++|++++++.+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~ 74 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA 74 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHH
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 4679999999999999999999999999999988644
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00014 Score=65.42 Aligned_cols=114 Identities=12% Similarity=0.011 Sum_probs=76.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-------eEEEEecCCccc--h---hhhhhhcCCCceEEEEccccccccCCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFTGR--K---DNLVHHFRNPRFELIRHDVVEPILLEVD 182 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-------~V~~l~r~~~~~--~---~~~~~~~~~~~v~~~~~Dv~~~~~~~iD 182 (263)
+..+|.|+||+|.||+.|+..|+.... ++.++|..+... + .++.+..-.........+-....+.+.|
T Consensus 23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~ad 102 (345)
T 4h7p_A 23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVA 102 (345)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCC
Confidence 344899999999999999998887532 678888653211 1 1122221122233444444455788999
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcC
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTST 230 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS 230 (263)
+||-.||.. .....+-.+.++.|..-...+.+...+.. +.++.+|.
T Consensus 103 vVvi~aG~p--rkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN 151 (345)
T 4h7p_A 103 IAIMCGAFP--RKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN 151 (345)
T ss_dssp EEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEEECCCCC--CCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence 999999853 23345667889999999999999987754 25555654
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=5.2e-05 Score=67.71 Aligned_cols=112 Identities=14% Similarity=0.185 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcC----CCceEEEEccccccccCCCcEEEEc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFR----NPRFELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
..+++|.|+|+ |.+|..++..|+..|. +++++|++.+..+....+... ...+.+...| .+.+.+.|+||.+
T Consensus 7 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~--~~a~~~aDiVvi~ 83 (326)
T 3vku_A 7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE--YSDAKDADLVVIT 83 (326)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC--GGGGTTCSEEEEC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc--HHHhcCCCEEEEC
Confidence 35578999995 9999999999999887 899999865443322222211 1234444333 3467899999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
||... ....+-.+.++.|..-...+.+.+.+.+. .++.+|.
T Consensus 84 ag~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 84 AGAPQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp CCCC------------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred CCCCC--CCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 98532 22233455678899989999999888764 5555554
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.2e-05 Score=75.39 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=52.7
Q ss_pred ccccCCCCEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcE
Q 024766 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQ 183 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~ 183 (263)
....+++++|+|+|+ |++|+.++..|++. |.+|++++|+.++..+.... ..+..+..|+.+. .+.++|+
T Consensus 17 ~~~~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~----~~~~~~~~D~~d~~~l~~~l~~~Dv 91 (467)
T 2axq_A 17 IEGRHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKP----SGSKAISLDVTDDSALDKVLADNDV 91 (467)
T ss_dssp ------CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGG----GTCEEEECCTTCHHHHHHHHHTSSE
T ss_pred cccCCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHh----cCCcEEEEecCCHHHHHHHHcCCCE
Confidence 445567889999997 99999999999998 67999999875443322221 2355666776543 3457999
Q ss_pred EEEccCCC
Q 024766 184 IYHLACPA 191 (263)
Q Consensus 184 Vi~~Ag~~ 191 (263)
||||++..
T Consensus 92 VIn~tp~~ 99 (467)
T 2axq_A 92 VISLIPYT 99 (467)
T ss_dssp EEECSCGG
T ss_pred EEECCchh
Confidence 99999753
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00027 Score=62.90 Aligned_cols=110 Identities=15% Similarity=0.094 Sum_probs=77.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcC-----CCceEEE-EccccccccCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR-----NPRFELI-RHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~-~~Dv~~~~~~~iD~Vi~~A 188 (263)
+++|.|+| +|.+|..++..|+..|. +|++++++++..+....+... .....+. ..| .+.+.+.|+||.+|
T Consensus 5 ~~kI~iiG-aG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d--~~a~~~aDvVIi~a 81 (321)
T 3p7m_A 5 RKKITLVG-AGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND--YKDLENSDVVIVTA 81 (321)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC--GGGGTTCSEEEECC
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC--HHHHCCCCEEEEcC
Confidence 46899999 59999999999999988 999999887654332222211 1122333 233 35788999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
|... ....+-.+.+..|......+++.+.+.+. .++.+|.
T Consensus 82 g~p~--k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 123 (321)
T 3p7m_A 82 GVPR--KPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN 123 (321)
T ss_dssp SCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CcCC--CCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 8532 23345567788999999999999888764 5555543
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=8.9e-05 Score=65.27 Aligned_cols=109 Identities=17% Similarity=0.095 Sum_probs=77.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhh---hhhhc--CCCceEEE-EccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDN---LVHHF--RNPRFELI-RHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~---~~~~~--~~~~v~~~-~~Dv~~~~~~~iD~Vi~~A 188 (263)
++|.|+|+ |.+|..++..|+..|. +|.+++++++..+.. +.+.. -.....+. ..| .+.+.+.|+||.+|
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d--~~a~~~aDiVViaa 77 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD--YSLLKGSEIIVVTA 77 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC--GGGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC--HHHhCCCCEEEECC
Confidence 47999998 9999999999999988 899999876543311 11111 11223333 234 66788999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
|... ....+-.+.+..|..-...+++.+.+.+. .++.+|.
T Consensus 78 g~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 78 GLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp CCCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CCCC--CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 8532 22345567789999999999999988864 5666654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00019 Score=56.53 Aligned_cols=73 Identities=19% Similarity=0.186 Sum_probs=51.5
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccCCCcEEE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIY 185 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~~iD~Vi 185 (263)
....+++|+|+| .|.+|..+++.|.+.|++|++++++++.... +. .......+.+|..+. ...++|+||
T Consensus 15 ~~~~~~~v~IiG-~G~iG~~la~~L~~~g~~V~vid~~~~~~~~-~~---~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi 89 (155)
T 2g1u_A 15 KKQKSKYIVIFG-CGRLGSLIANLASSSGHSVVVVDKNEYAFHR-LN---SEFSGFTVVGDAAEFETLKECGMEKADMVF 89 (155)
T ss_dssp --CCCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCGGGGGG-SC---TTCCSEEEESCTTSHHHHHTTTGGGCSEEE
T ss_pred cccCCCcEEEEC-CCHHHHHHHHHHHhCCCeEEEEECCHHHHHH-HH---hcCCCcEEEecCCCHHHHHHcCcccCCEEE
Confidence 345667999999 5999999999999999999999987554322 11 022345666665442 145689999
Q ss_pred EccC
Q 024766 186 HLAC 189 (263)
Q Consensus 186 ~~Ag 189 (263)
.+.+
T Consensus 90 ~~~~ 93 (155)
T 2g1u_A 90 AFTN 93 (155)
T ss_dssp ECSS
T ss_pred EEeC
Confidence 9884
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00012 Score=65.21 Aligned_cols=111 Identities=12% Similarity=0.043 Sum_probs=75.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhc-----CCCceEEE-EccccccccCCCcEEEEc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHF-----RNPRFELI-RHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~-~~Dv~~~~~~~iD~Vi~~ 187 (263)
++++|.|+|+ |.+|..++..|+..|. +|++++++++..+....+.. ......+. ..|. +.+.+.|+||.+
T Consensus 6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~--~a~~~aDiVIia 82 (324)
T 3gvi_A 6 ARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY--AAIEGADVVIVT 82 (324)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG--GGGTTCSEEEEC
T ss_pred cCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH--HHHCCCCEEEEc
Confidence 4568999997 9999999999999998 99999988765432221111 11122232 2343 578899999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
||.... ...+-.+.+..|..-...+++.+.+.+. .++.+|.
T Consensus 83 ag~p~k--~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 83 AGVPRK--PGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp CSCCCC-------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred cCcCCC--CCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 985322 2223345678899999999999887764 5666654
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00028 Score=62.67 Aligned_cols=109 Identities=20% Similarity=0.191 Sum_probs=71.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCC----CceEEEEccccccccCCCcEEEEccC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN----PRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~----~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.++|.|+|+ |.+|..++..|+..|. +|+++|.+.++.+....+.... ..+.+...| .+.+.+.|+||.++|
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~--~~a~~~aDvVii~~g 83 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD--YSDVKDCDVIVVTAG 83 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C--GGGGTTCSEEEECCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECC--HHHhCCCCEEEEcCC
Confidence 357999997 9999999999999987 8999998765544333332111 233333322 446889999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vS 229 (263)
... .....-.+.+..|+.....+++.+.+.+. .++++|
T Consensus 84 ~p~--k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 84 ANR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp C--------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred CCC--CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 532 22334456788999999999999887653 444443
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.81 E-value=5.3e-05 Score=59.59 Aligned_cols=72 Identities=19% Similarity=0.256 Sum_probs=53.1
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccCCCcEEEEccC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLAC 189 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~~iD~Vi~~Ag 189 (263)
.++++|+| .|.+|+.+++.|.+.|++|++++++.....+.+.... ...+.++.+|.+++ .+.+.|.||.+.+
T Consensus 3 ~~~vlI~G-~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (153)
T 1id1_A 3 KDHFIVCG-HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-GDNADVIPGDSNDSSVLKKAGIDRCRAILALSD 80 (153)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-CTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-cCCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence 35789999 5999999999999999999999986432222232221 23477888998765 2567999998873
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.1e-05 Score=68.50 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=61.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLACP 190 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag~ 190 (263)
.|+|+|.|| |++|+.+++.|.+. ++|.+.+++.+..+. + ...+..+..|+.|. .+.+.|+||+++++
T Consensus 16 ~mkilvlGa-G~vG~~~~~~L~~~-~~v~~~~~~~~~~~~-~-----~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~ 87 (365)
T 3abi_A 16 HMKVLILGA-GNIGRAIAWDLKDE-FDVYIGDVNNENLEK-V-----KEFATPLKVDASNFDKLVEVMKEFELVIGALPG 87 (365)
T ss_dssp CCEEEEECC-SHHHHHHHHHHTTT-SEEEEEESCHHHHHH-H-----TTTSEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred ccEEEEECC-CHHHHHHHHHHhcC-CCeEEEEcCHHHHHH-H-----hccCCcEEEecCCHHHHHHHHhCCCEEEEecCC
Confidence 347999997 99999999988764 699998876443222 1 12345667787664 45689999999853
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEc
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTS 229 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vS 229 (263)
.. ...++++|.+.|+++|=+|
T Consensus 88 ~~------------------~~~v~~~~~~~g~~yvD~s 108 (365)
T 3abi_A 88 FL------------------GFKSIKAAIKSKVDMVDVS 108 (365)
T ss_dssp GG------------------HHHHHHHHHHHTCEEEECC
T ss_pred cc------------------cchHHHHHHhcCcceEeee
Confidence 20 1256777878777776654
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.80 E-value=1.8e-05 Score=69.30 Aligned_cols=75 Identities=13% Similarity=0.101 Sum_probs=51.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC---CC---ceEEEEccccccccCCCcEEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR---NP---RFELIRHDVVEPILLEVDQIYH 186 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~---~~---~v~~~~~Dv~~~~~~~iD~Vi~ 186 (263)
.+++|+++|||+ |++|++++..|++.| +|++++|+.++..+...+... .. .+++ .|+ .+.+.++|+|||
T Consensus 125 ~l~~k~vlV~Ga-GgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~--~~~-~~~~~~~DilVn 199 (287)
T 1nvt_A 125 RVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF--SGL-DVDLDGVDIIIN 199 (287)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE--ECT-TCCCTTCCEEEE
T ss_pred CcCCCEEEEECc-hHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEE--eeH-HHhhCCCCEEEE
Confidence 467899999997 599999999999999 999998875443332222100 00 1222 122 345678999999
Q ss_pred ccCCCC
Q 024766 187 LACPAS 192 (263)
Q Consensus 187 ~Ag~~~ 192 (263)
|+|...
T Consensus 200 ~ag~~~ 205 (287)
T 1nvt_A 200 ATPIGM 205 (287)
T ss_dssp CSCTTC
T ss_pred CCCCCC
Confidence 998644
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0003 Score=62.14 Aligned_cols=109 Identities=15% Similarity=0.153 Sum_probs=70.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcC-----CCceEEEE-ccccccccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR-----NPRFELIR-HDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~~-~Dv~~~~~~~iD~Vi~~Ag 189 (263)
++|.|+|+ |.+|..++..|+..|. +|+++|++.++.+....+... .....+.. .|. +.+.+.|+||.++|
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~a~g 79 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY--ADTANSDVIVVTSG 79 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG--GGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH--HHHCCCCEEEEcCC
Confidence 58999997 9999999999999997 888888876544332222211 11222222 454 46789999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST 230 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS 230 (263)
...... ..-...+..|......+.+.+.+.+. .+|++.|
T Consensus 80 ~p~~~g--~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t 119 (309)
T 1ur5_A 80 APRKPG--MSREDLIKVNADITRACISQAAPLSPNAVIIMVN 119 (309)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred CCCCCC--CCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence 543221 12234567888888889998887764 4444433
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=6.6e-05 Score=65.16 Aligned_cols=76 Identities=11% Similarity=0.157 Sum_probs=50.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc-CCCcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL-LEVDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~-~~iD~Vi~~Ag~~ 191 (263)
.+++|+++|+|+ |++|++++..|++.|.+|++.+|+.++..+.....-....+... |+. ... .+.|+|||+++..
T Consensus 116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~--~~~-~~~~~~~DivIn~t~~~ 191 (272)
T 1p77_A 116 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAV--SMD-SIPLQTYDLVINATSAG 191 (272)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEE--EGG-GCCCSCCSEEEECCCC-
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEe--eHH-HhccCCCCEEEECCCCC
Confidence 467899999996 89999999999999999999998765433332222111123332 321 111 4799999999754
Q ss_pred C
Q 024766 192 S 192 (263)
Q Consensus 192 ~ 192 (263)
.
T Consensus 192 ~ 192 (272)
T 1p77_A 192 L 192 (272)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.8e-05 Score=75.02 Aligned_cols=110 Identities=12% Similarity=0.059 Sum_probs=60.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~ 192 (263)
.+++|+++|||| |++|++++..|++.|++|++++|+.++..+.. +.+.. .+..+ .|+.+.....+|+||||+|...
T Consensus 361 ~l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la-~~~~~-~~~~~-~dl~~~~~~~~DilVN~agvg~ 436 (523)
T 2o7s_A 361 PLASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELA-EAIGG-KALSL-TDLDNYHPEDGMVLANTTSMGM 436 (523)
T ss_dssp -----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHH-HHTTC--CEET-TTTTTC--CCSEEEEECSSTTC
T ss_pred ccCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HHcCC-ceeeH-HHhhhccccCceEEEECCCCCC
Confidence 357789999998 79999999999999999999988755433322 22221 11111 1332112345899999998643
Q ss_pred CC-----CCCC----CHHHHHHHHHHHH-HHHHHHHHHcCCeEE
Q 024766 193 PV-----HYKY----NPVKTIKTNVMGT-LNMLGLAKRVGAKFL 226 (263)
Q Consensus 193 ~~-----~~~~----~~~~~~~~Nv~gt-~~ll~~a~~~~~~iV 226 (263)
.. ...+ .+...+++|+.+. ..+++.+++.|.+++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~v~Dvny~p~~T~ll~~a~~~G~~~i 480 (523)
T 2o7s_A 437 QPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITV 480 (523)
T ss_dssp TTCTTCCSSCTTTGGGEEEEEECCCSSSSCHHHHHHHTTTCEEE
T ss_pred CCCCCCCCCChHHcCcCcEEEEEeeCCccCHHHHHHHHCCCEEE
Confidence 11 1111 1223345555442 245666666665544
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=1.9e-05 Score=70.09 Aligned_cols=70 Identities=14% Similarity=0.011 Sum_probs=48.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccc-c--------cc-CCCcE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE-P--------IL-LEVDQ 183 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~-~--------~~-~~iD~ 183 (263)
..+++|+||||+|+||..+++.+...|++|++++++.++.+. +. .++. . .. .|..+ . .. .++|+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~-~~-~~g~-~-~~--~d~~~~~~~~~~~~~~~~~~~d~ 217 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAY-LK-QIGF-D-AA--FNYKTVNSLEEALKKASPDGYDC 217 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HH-HTTC-S-EE--EETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HH-hcCC-c-EE--EecCCHHHHHHHHHHHhCCCCeE
Confidence 367899999999999999999999999999999986543322 22 2222 1 11 23332 1 11 36999
Q ss_pred EEEccC
Q 024766 184 IYHLAC 189 (263)
Q Consensus 184 Vi~~Ag 189 (263)
+|+|+|
T Consensus 218 vi~~~g 223 (333)
T 1v3u_A 218 YFDNVG 223 (333)
T ss_dssp EEESSC
T ss_pred EEECCC
Confidence 999997
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00019 Score=64.19 Aligned_cols=112 Identities=14% Similarity=0.122 Sum_probs=76.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcC----CCceEEE-EccccccccCCCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFR----NPRFELI-RHDVVEPILLEVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~----~~~v~~~-~~Dv~~~~~~~iD~Vi~ 186 (263)
..+++|.|+|+ |.+|..++..|+..|. +++++|+..+..+....+... ......+ ..|. + .+.+.|+||.
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~-~-~~~~aDiVvi 93 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDY-S-VTANSKLVII 93 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSG-G-GGTTEEEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCH-H-HhCCCCEEEE
Confidence 35678999996 9999999999999987 899999865443332222211 1122233 2343 2 5889999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
+||... ....+-.+.++.|..-...+.+.+.+... .++.+|.
T Consensus 94 ~aG~~~--kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 94 TAGARQ--QEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp CCSCCC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred ccCCCC--CCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 998542 22334456788999999999999887753 5666654
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00021 Score=63.53 Aligned_cols=110 Identities=15% Similarity=0.106 Sum_probs=75.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCC--ccchhhhhhhc-------CCCceEEEEccccccccCCCcEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF--TGRKDNLVHHF-------RNPRFELIRHDVVEPILLEVDQI 184 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~--~~~~~~~~~~~-------~~~~v~~~~~Dv~~~~~~~iD~V 184 (263)
+.++|.|+|+ |.+|..++..|+..|. +|+++++++ ...+....+.. ...++.. ..| ...+.+.|+|
T Consensus 7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~-t~d--~~a~~~aDvV 82 (315)
T 3tl2_A 7 KRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIG-TSD--YADTADSDVV 82 (315)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEE-ESC--GGGGTTCSEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEE-cCC--HHHhCCCCEE
Confidence 3568999996 9999999999999999 999999873 22221111111 1122221 122 3467899999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
|.+||... ....+-.+.+..|..-...+.+.+.+.+. .++.+|.
T Consensus 83 Iiaag~p~--kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 83 VITAGIAR--KPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp EECCSCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred EEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 99998532 22345577889999999999999887764 5666654
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00038 Score=61.21 Aligned_cols=109 Identities=16% Similarity=0.074 Sum_probs=75.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhc-----CCCceEEEE-ccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF-----RNPRFELIR-HDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~-~Dv~~~~~~~iD~Vi~~A 188 (263)
++|.|+| +|+||+.++..|+.++. ++.++|..+........++. -........ .|. +.+.+.|+||-.|
T Consensus 1 MKV~IiG-aG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~--~~~~~aDvVvitA 77 (294)
T 2x0j_A 1 MKLGFVG-AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY--SLLKGSEIIVVTA 77 (294)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG--GGGTTCSEEEECC
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH--HHhCCCCEEEEec
Confidence 4789999 59999999999998875 89999986543332222221 111222222 232 3578899999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
|..- ....+-.+.++.|..-...+.+.+.+.+. .++.+|.
T Consensus 78 G~pr--kpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 78 GLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp CCCC--CSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred CCCC--CCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 8543 33456778899999999999999988874 4555554
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00046 Score=61.52 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=74.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCC----CceEEEEccccccccCCCcEEEEccC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN----PRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~----~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.++|.|+|+ |.+|..++..|+..+. ++.++|+..++.+....+.... ..+.+.. | ..+.+.+.|+||..+|
T Consensus 9 ~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~-~~~a~~~aDvVii~ag 85 (326)
T 2zqz_A 9 HQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A-EYSDAKDADLVVITAG 85 (326)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C-CGGGGGGCSEEEECCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEEcCC
Confidence 358999997 9999999999998876 8999998654443322222111 2344443 3 2456889999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
... .....-...+..|......+++.+++.+. .++.+|.
T Consensus 86 ~~~--k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 126 (326)
T 2zqz_A 86 APQ--KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp CC-------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred CCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 532 22334456788999999999998887754 5666543
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00013 Score=65.89 Aligned_cols=97 Identities=8% Similarity=0.115 Sum_probs=61.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCC-----C-eEEEEecCCc--cchhhhhhhcCC-CceEEEEccccccccCCCcEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRG-----D-EVIVIDNFFT--GRKDNLVHHFRN-PRFELIRHDVVEPILLEVDQIY 185 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G-----~-~V~~l~r~~~--~~~~~~~~~~~~-~~v~~~~~Dv~~~~~~~iD~Vi 185 (263)
++++|.|.||||.+|++|++.|++++ . +++.+.++.. +........+.. ..+.+...| ...+.++|+||
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~--~~~~~~~DvVf 85 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTE--AAVLGGHDAVF 85 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECC--HHHHTTCSEEE
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCC--HHHhcCCCEEE
Confidence 34689999999999999999999987 4 7777654321 111111111111 122333333 23355899999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
.|+|... +..++..+ +.|+++|-+|+..
T Consensus 86 ~alg~~~------------------s~~~~~~~-~~G~~vIDlSa~~ 113 (352)
T 2nqt_A 86 LALPHGH------------------SAVLAQQL-SPETLIIDCGADF 113 (352)
T ss_dssp ECCTTSC------------------CHHHHHHS-CTTSEEEECSSTT
T ss_pred ECCCCcc------------------hHHHHHHH-hCCCEEEEECCCc
Confidence 9986432 22466667 7778999999864
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=97.63 E-value=0.0006 Score=60.31 Aligned_cols=109 Identities=14% Similarity=0.074 Sum_probs=76.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccchhhhhhhcC----CCceEEEEccccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHHFR----NPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
++|.|+|+ |.+|..++..|+..+ .++.++|+..++.+....+... ...+.+...| .+.+.+.|+||..+|.
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~--~~a~~~aD~Vii~ag~ 77 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGS--YGDLEGARAVVLAAGV 77 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECC--GGGGTTEEEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECC--HHHhCCCCEEEECCCC
Confidence 47999997 999999999999987 4899999875444332222211 1233444332 5568899999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
... ....-...+..|......+++.+++.+. .++.+|.
T Consensus 78 ~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (310)
T 2xxj_A 78 AQR--PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN 117 (310)
T ss_dssp CCC--TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCC--CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 432 2334556788999999999998888764 5666544
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=8e-05 Score=66.19 Aligned_cols=78 Identities=8% Similarity=0.046 Sum_probs=51.8
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecC---Cccchhhhhhhc--CCCceEEEEcccc---ccccCCCc
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF---FTGRKDNLVHHF--RNPRFELIRHDVV---EPILLEVD 182 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~---~~~~~~~~~~~~--~~~~v~~~~~Dv~---~~~~~~iD 182 (263)
..+++|+++|+|+ |++|++++..|++.|. +|+++.|+ .++..+...+.. ....+..+..+-. .+.+.+.|
T Consensus 150 ~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD 228 (315)
T 3tnl_A 150 HDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV 228 (315)
T ss_dssp CCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred CCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence 3468999999996 8999999999999999 89999987 332222222211 1223444433321 23456799
Q ss_pred EEEEccCC
Q 024766 183 QIYHLACP 190 (263)
Q Consensus 183 ~Vi~~Ag~ 190 (263)
+|||+...
T Consensus 229 iIINaTp~ 236 (315)
T 3tnl_A 229 IFTNATGV 236 (315)
T ss_dssp EEEECSST
T ss_pred EEEECccC
Confidence 99999753
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00057 Score=60.63 Aligned_cols=110 Identities=10% Similarity=0.014 Sum_probs=74.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhc-----CCCceEEEEccccccccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF-----RNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
++|.|+|+ |.+|..++..|+..|. +|+++++.++..+....++. ......+...|. ...+.+.|+||.+||
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~-~~a~~~aDvVii~ag 78 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTND-YGPTEDSDVCIITAG 78 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESS-SGGGTTCSEEEECCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCC-HHHhCCCCEEEECCC
Confidence 47899995 9999999999999887 89999987765433222221 112233332222 456788999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
... ....+-.+.+..|..-...+.+.+.+.+. .++.+|.
T Consensus 79 ~~~--kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 79 LPR--SPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp C---------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred CCC--CCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 532 22234467789999999999999988764 5666654
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.58 E-value=4.8e-05 Score=68.92 Aligned_cols=76 Identities=18% Similarity=0.250 Sum_probs=50.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEE--ccccccccCCCcEEEEccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIR--HDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~--~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
.+.+++|+|+|+ |.||..+++.+...|++|++++++.+.... +.+... ..+.... .+..++.+.++|+||+|++.
T Consensus 163 ~l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~-~~~~~g-~~~~~~~~~~~~l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 163 GVAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQY-LDDVFG-GRVITLTATEANIKKSVQHADLLIGAVLV 239 (369)
T ss_dssp BBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHTT-TSEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHH-HHHhcC-ceEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence 467789999998 999999999999999999999987544322 222222 2222211 11122345579999999975
Q ss_pred C
Q 024766 191 A 191 (263)
Q Consensus 191 ~ 191 (263)
.
T Consensus 240 ~ 240 (369)
T 2eez_A 240 P 240 (369)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=3.1e-05 Score=68.84 Aligned_cols=73 Identities=18% Similarity=0.105 Sum_probs=48.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---ccccc----ccCCCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEP----ILLEVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~----~~~~iD~Vi~ 186 (263)
..+++|+|+||+|+||..+++.+...|++|++++++.++.+....+ ++.. ..++. |..+. .-.++|++|+
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~~~~~~~~~~~~~d~vi~ 224 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE-LGFD--GAIDYKNEDLAAGLKRECPKGIDVFFD 224 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-TCCS--EEEETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-cCCC--EEEECCCHHHHHHHHHhcCCCceEEEE
Confidence 3678999999999999999999999999999999865433322122 2221 12221 11111 1135999999
Q ss_pred ccC
Q 024766 187 LAC 189 (263)
Q Consensus 187 ~Ag 189 (263)
|+|
T Consensus 225 ~~g 227 (336)
T 4b7c_A 225 NVG 227 (336)
T ss_dssp SSC
T ss_pred CCC
Confidence 996
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00042 Score=61.52 Aligned_cols=109 Identities=15% Similarity=0.156 Sum_probs=71.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcC----CCceEEEEccccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFR----NPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
++|.|+|+ |.+|..++..|+..+. ++.++|+..++.+....+... ...+.+.. | ..+.+.+.|+||..+|.
T Consensus 6 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~-~~~a~~~aDvVii~ag~ 82 (318)
T 1ez4_A 6 QKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G-EYSDCKDADLVVITAGA 82 (318)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C-CGGGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C-CHHHhCCCCEEEECCCC
Confidence 58999997 9999999999999876 899999865444322222211 13344443 3 34568899999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
.... ...-.+.+..|......+++.+++.+. .++.+|.
T Consensus 83 ~~~~--g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 122 (318)
T 1ez4_A 83 PQKP--GESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN 122 (318)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 4322 222335578899999999998888764 5555543
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00051 Score=61.33 Aligned_cols=111 Identities=13% Similarity=0.014 Sum_probs=75.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhc---C-CCceEEE-EccccccccCCCcEEEEc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF---R-NPRFELI-RHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~---~-~~~v~~~-~~Dv~~~~~~~iD~Vi~~ 187 (263)
..++|.|+|+ |.+|..++..|+..|. +|+++|++.+..+....++. . .....+. ..|.. .+.+.|+||-+
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~--~~~daDiVIit 96 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS--VSAGSKLVVIT 96 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC--SCSSCSEEEEC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH--HhCCCCEEEEe
Confidence 4568999997 9999999999999987 89999986554333222111 0 1112222 34543 38899999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
||..... ..+-.+.+..|..-...+++.+.+.+. .++.+|.
T Consensus 97 aG~p~kp--G~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 97 AGARQQE--GESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp CSCCCCS--SCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCCCCCC--CCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 9864322 233345677898888889888887754 5666654
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0017 Score=57.25 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=72.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhC--CCeEEEEecCCccchhhhhhhcC-----CCceEEEE-ccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDNFFTGRKDNLVHHFR-----NPRFELIR-HDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~--G~~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~~-~Dv~~~~~~~iD~Vi~~A 188 (263)
++|.|+|+ |.+|..++..|++. |++|++++++.+..+........ .....+.. .|. + .+.+.|+||-++
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~-~l~~aDvViiav 77 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDY-A-DTANSDIVIITA 77 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCG-G-GGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCH-H-HHCCCCEEEEeC
Confidence 47999997 99999999999985 78999999986544432211111 11222222 344 2 378899999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
+.. ......-.+.+..|..-...+++.+.+... .++.++.
T Consensus 78 ~~p--~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN 119 (310)
T 1guz_A 78 GLP--RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (310)
T ss_dssp SCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred CCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 742 222233556778899988899888877653 5555543
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00068 Score=60.51 Aligned_cols=105 Identities=13% Similarity=0.033 Sum_probs=69.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhh------cC-CCceEEEEccccccccCCCcEEEEc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH------FR-NPRFELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~------~~-~~~v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
.++|.|+|| |.+|..++..|+..|. +|.+++++.+..+...... .. ..++.. ..|. ++.+.+.|+||.+
T Consensus 9 ~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~-~ea~~~aDiVi~a 85 (331)
T 1pzg_A 9 RKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRA-EYSY-EAALTGADCVIVT 85 (331)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEE-ECSH-HHHHTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEE-eCCH-HHHhCCCCEEEEc
Confidence 458999997 9999999999999998 9999998865544322111 11 122221 2344 3357899999999
Q ss_pred cCCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHcCC
Q 024766 188 ACPASPVHYKY---NPVKTIKTNVMGTLNMLGLAKRVGA 223 (263)
Q Consensus 188 Ag~~~~~~~~~---~~~~~~~~Nv~gt~~ll~~a~~~~~ 223 (263)
+|.......+. .-......|..-...+.+.+.+...
T Consensus 86 ~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p 124 (331)
T 1pzg_A 86 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCP 124 (331)
T ss_dssp CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred cCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 98543222100 2334467788888888888877654
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00025 Score=61.69 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=52.0
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
..+++|+++|+|+ |++|++++..|++.|. +|+++.|+.++..+...+. ....+.....+-.+. .+.|+|||+...
T Consensus 116 ~~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~-~~~~~~~~~~~~l~~--~~~DivInaTp~ 191 (272)
T 3pwz_A 116 EPLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNEL-DHSRLRISRYEALEG--QSFDIVVNATSA 191 (272)
T ss_dssp CCCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHH-CCTTEEEECSGGGTT--CCCSEEEECSSG
T ss_pred CCccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh-ccCCeeEeeHHHhcc--cCCCEEEECCCC
Confidence 3568899999995 8999999999999996 8999988765444333332 222344443332221 679999999653
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=3.4e-05 Score=69.15 Aligned_cols=72 Identities=22% Similarity=0.109 Sum_probs=47.8
Q ss_pred CC--CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEc---cccccc---c-CCCcEE
Q 024766 115 RR--LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEPI---L-LEVDQI 184 (263)
Q Consensus 115 ~~--k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~~---~-~~iD~V 184 (263)
.+ ++|+|+||+|+||..+++.+...|+ +|++++++.++.. .+.+.++.. ..+.. |..+.. . .++|++
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~-~~~~~~g~~--~~~d~~~~~~~~~~~~~~~~~~d~v 234 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCI-LLTSELGFD--AAINYKKDNVAEQLRESCPAGVDVY 234 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHH-HHHHTSCCS--EEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHH-HHHHHcCCc--eEEecCchHHHHHHHHhcCCCCCEE
Confidence 46 8999999999999999999999999 9999998644332 222212221 12221 111111 1 259999
Q ss_pred EEccC
Q 024766 185 YHLAC 189 (263)
Q Consensus 185 i~~Ag 189 (263)
|+|+|
T Consensus 235 i~~~G 239 (357)
T 2zb4_A 235 FDNVG 239 (357)
T ss_dssp EESCC
T ss_pred EECCC
Confidence 99997
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00013 Score=63.87 Aligned_cols=77 Identities=14% Similarity=0.077 Sum_probs=53.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhc---CCCceEEEEccccccccCCCcEEEEcc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
.+++|+++|+|+ |++|++++..|++.|. +|++++|+.++..+...+.. ....+..+..|-.+..+.+.|+|||+.
T Consensus 124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT 202 (283)
T 3jyo_A 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT 202 (283)
T ss_dssp TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence 467899999996 9999999999999999 79999887654433322221 122344443333334456799999997
Q ss_pred CC
Q 024766 189 CP 190 (263)
Q Consensus 189 g~ 190 (263)
..
T Consensus 203 p~ 204 (283)
T 3jyo_A 203 PM 204 (283)
T ss_dssp ST
T ss_pred CC
Confidence 53
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00012 Score=64.35 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=52.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
.+++++++|+|+ |++|+.++..|++.|. +|++.+|+.++..+.. +.+....-.....+-..+.+.+.|+||++.+..
T Consensus 138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la-~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~ 215 (297)
T 2egg_A 138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLV-REGDERRSAYFSLAEAETRLAEYDIIINTTSVG 215 (297)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHH-HHSCSSSCCEECHHHHHHTGGGCSEEEECSCTT
T ss_pred CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH-HHhhhccCceeeHHHHHhhhccCCEEEECCCCC
Confidence 467899999995 8999999999999998 8999988755433322 222211002222222234556799999998754
Q ss_pred C
Q 024766 192 S 192 (263)
Q Consensus 192 ~ 192 (263)
.
T Consensus 216 ~ 216 (297)
T 2egg_A 216 M 216 (297)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=3.3e-05 Score=68.40 Aligned_cols=71 Identities=18% Similarity=0.122 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---ccccc---cc--CCCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEP---IL--LEVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~---~~--~~iD~Vi~ 186 (263)
.+++|+|+||+|+||..+++.+...|++|++++++.++.+ .+.+ +... ..+.. |..+. .. .++|++|+
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~-~~~~-~g~~--~~~~~~~~~~~~~~~~~~~~~~~D~vi~ 215 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQ-SALK-AGAW--QVINYREEDLVERLKEITGGKKVRVVYD 215 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHH-HHHH-HTCS--EEEETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHH-cCCC--EEEECCCccHHHHHHHHhCCCCceEEEE
Confidence 5789999999999999999999999999999998644332 2222 2221 12221 11111 11 25999999
Q ss_pred ccC
Q 024766 187 LAC 189 (263)
Q Consensus 187 ~Ag 189 (263)
|+|
T Consensus 216 ~~g 218 (327)
T 1qor_A 216 SVG 218 (327)
T ss_dssp CSC
T ss_pred CCc
Confidence 997
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00073 Score=59.50 Aligned_cols=108 Identities=18% Similarity=0.185 Sum_probs=67.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCC----CceEEEEccccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN----PRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~----~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
++|.|+|+ |.+|..++..|+..|. +|++++++.+.......+.... ....+...| .+.+.+.|+||.+++.
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~--~~a~~~aDvVIi~~~~ 77 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG--HSELADAQVVILTAGA 77 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC--GGGGTTCSEEEECC--
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC--HHHhCCCCEEEEcCCC
Confidence 47999997 9999999999999998 9999998754333222222111 122333223 2467889999999975
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vS 229 (263)
.... ...-.+.+..|+.....+++.+.+... .++++|
T Consensus 78 ~~~~--g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 78 NQKP--GESRLDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred CCCC--CCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3321 122234567888888888888877653 444444
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00026 Score=61.82 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=51.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
.+++|+++|+|+ |++|++++..|++.|. +|+++.|+.++..+...+.-....+.....+ + ...+.|+|||+...
T Consensus 123 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~--~-l~~~aDiIInaTp~ 197 (281)
T 3o8q_A 123 LLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFE--Q-LKQSYDVIINSTSA 197 (281)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG--G-CCSCEEEEEECSCC
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHH--H-hcCCCCEEEEcCcC
Confidence 467899999996 8999999999999996 9999998765443333322111134444332 1 12678999998754
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00015 Score=62.14 Aligned_cols=105 Identities=10% Similarity=0.099 Sum_probs=66.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCc------------------cchhhhhhhc----CCCceEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFT------------------GRKDNLVHHF----RNPRFELI 169 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~------------------~~~~~~~~~~----~~~~v~~~ 169 (263)
.+++++|+|.| .|++|.++++.|+..|. +++++++..- .+.+.+.+.+ ....++.+
T Consensus 28 ~l~~~~VlVvG-~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 106 (249)
T 1jw9_B 28 ALKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV 106 (249)
T ss_dssp HHHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhCCeEEEEe-eCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence 45778999999 69999999999999998 8899888641 1111111111 12345555
Q ss_pred Eccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 170 RHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 170 ~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
..++.+ ..+.+.|+||.+.. +++ .-..+.+.+.+.++.+|..+..+.+|
T Consensus 107 ~~~~~~~~~~~~~~~~DvVi~~~d---------~~~--------~~~~l~~~~~~~~~p~i~~~~~g~~g 159 (249)
T 1jw9_B 107 NALLDDAELAALIAEHDLVLDCTD---------NVA--------VRNQLNAGCFAAKVPLVSGAAIRMEG 159 (249)
T ss_dssp CSCCCHHHHHHHHHTSSEEEECCS---------SHH--------HHHHHHHHHHHHTCCEEEEEEEBTEE
T ss_pred eccCCHhHHHHHHhCCCEEEEeCC---------CHH--------HHHHHHHHHHHcCCCEEEeeeccceE
Confidence 555543 24567999999872 221 11235566777777777765544333
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.50 E-value=7.9e-05 Score=66.56 Aligned_cols=69 Identities=17% Similarity=0.174 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccc------cc---c-CCCcEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE------PI---L-LEVDQI 184 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~------~~---~-~~iD~V 184 (263)
.+++|+|+|++|+||..+++.+...|++|++++++.++. +.+.+ +... ..+ |..+ .. . .++|+|
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~-~~~~~-~g~~--~~~--d~~~~~~~~~~~~~~~~~~~D~v 242 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKE-ELFRS-IGGE--VFI--DFTKEKDIVGAVLKATDGGAHGV 242 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHH-HHHHH-TTCC--EEE--ETTTCSCHHHHHHHHHTSCEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHH-HHHHH-cCCc--eEE--ecCccHhHHHHHHHHhCCCCCEE
Confidence 578999999999999999999999999999999876544 22222 2221 122 3321 11 1 269999
Q ss_pred EEccC
Q 024766 185 YHLAC 189 (263)
Q Consensus 185 i~~Ag 189 (263)
|+++|
T Consensus 243 i~~~g 247 (347)
T 2hcy_A 243 INVSV 247 (347)
T ss_dssp EECSS
T ss_pred EECCC
Confidence 99997
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=4.2e-05 Score=68.63 Aligned_cols=72 Identities=13% Similarity=0.017 Sum_probs=48.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---ccccc---cc--CCCcEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEP---IL--LEVDQIY 185 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~---~~--~~iD~Vi 185 (263)
..+++|+|+||+|+||..+++.+...|++|++++++.++.+. +.+. +.. ..+.. |..+. .. .++|++|
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~-~~~~-g~~--~~~~~~~~~~~~~~~~~~~~~~~d~vi 236 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQM-AEKL-GAA--AGFNYKKEDFSEATLKFTKGAGVNLIL 236 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHH-TCS--EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHH-HHHc-CCc--EEEecCChHHHHHHHHHhcCCCceEEE
Confidence 357899999999999999999999999999999986543322 2222 221 12221 11111 11 2599999
Q ss_pred EccC
Q 024766 186 HLAC 189 (263)
Q Consensus 186 ~~Ag 189 (263)
+|+|
T Consensus 237 ~~~G 240 (354)
T 2j8z_A 237 DCIG 240 (354)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9997
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=4.6e-05 Score=68.43 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---ccccc---cc--CCCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEP---IL--LEVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~---~~--~~iD~Vi~ 186 (263)
.+++|+|+||+|+||..+++.+...|++|++++++.++.+ .+.+ ++.. ..+.. |..+. .. .++|+||+
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~-~ga~--~~~d~~~~~~~~~~~~~~~~~~~D~vi~ 245 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQK-IVLQ-NGAH--EVFNHREVNYIDKIKKYVGEKGIDIIIE 245 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHH-TTCS--EEEETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHH-HHHH-cCCC--EEEeCCCchHHHHHHHHcCCCCcEEEEE
Confidence 5789999999999999999999999999999998654433 2222 2221 12221 11111 11 25999999
Q ss_pred ccC
Q 024766 187 LAC 189 (263)
Q Consensus 187 ~Ag 189 (263)
|+|
T Consensus 246 ~~G 248 (351)
T 1yb5_A 246 MLA 248 (351)
T ss_dssp SCH
T ss_pred CCC
Confidence 996
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0001 Score=57.43 Aligned_cols=71 Identities=13% Similarity=0.204 Sum_probs=50.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
+++++|.| +|.+|..+++.|.+.|.+|++.+|+.++..+... .++ +.....+-..+.+.+.|+||.+.+..
T Consensus 21 ~~~v~iiG-~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~-~~~---~~~~~~~~~~~~~~~~Divi~at~~~ 91 (144)
T 3oj0_A 21 GNKILLVG-NGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAE-KYE---YEYVLINDIDSLIKNNDVIITATSSK 91 (144)
T ss_dssp CCEEEEEC-CSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHH-HHT---CEEEECSCHHHHHHTCSEEEECSCCS
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHH-HhC---CceEeecCHHHHhcCCCEEEEeCCCC
Confidence 77999999 5999999999999999998888886554333222 222 33333443444567899999998643
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0016 Score=57.74 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=74.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhh---hc--CCCceEEEEccccccccCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVH---HF--RNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~---~~--~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
.++|.|+|+ |.+|..++..|+..|. +|.++|++.++.+....+ .. ....+.+.. |. .+.+.+.|+||..+
T Consensus 6 ~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~~-~~a~~~aDvVvi~a 82 (317)
T 3d0o_A 6 GNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-GE-YSDCHDADLVVICA 82 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-CC-GGGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-CC-HHHhCCCCEEEECC
Confidence 458999998 9999999999999884 899998765433322111 11 112334443 32 45688999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vS 229 (263)
|... .....-...+..|..-...+++.+.+... .++++|
T Consensus 83 g~~~--~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 83 GAAQ--KPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp CCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CCCC--CCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 8533 22344556788999999999998888764 455544
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.47 E-value=4.1e-05 Score=68.00 Aligned_cols=71 Identities=20% Similarity=0.119 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---ccccc---cc--CCCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEP---IL--LEVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~---~~--~~iD~Vi~ 186 (263)
.+++|+|+||+|+||..+++.+...|++|++++++.++.+ .+.+ +... ..+.. |..+. .. .++|++|+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~-~~~~-~g~~--~~~d~~~~~~~~~i~~~~~~~~~d~vi~ 220 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAE-TARK-LGCH--HTINYSTQDFAEVVREITGGKGVDVVYD 220 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHH-HHHH-HTCS--EEEETTTSCHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHH-cCCC--EEEECCCHHHHHHHHHHhCCCCCeEEEE
Confidence 5789999999999999999999999999999998654332 2222 2221 12221 11111 11 25999999
Q ss_pred ccC
Q 024766 187 LAC 189 (263)
Q Consensus 187 ~Ag 189 (263)
|+|
T Consensus 221 ~~g 223 (333)
T 1wly_A 221 SIG 223 (333)
T ss_dssp CSC
T ss_pred CCc
Confidence 997
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0026 Score=57.67 Aligned_cols=114 Identities=14% Similarity=0.029 Sum_probs=74.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC--e---EEEEecCCccc----hhhhhhhcCCC--c-eEEEEccccccccCCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--E---VIVIDNFFTGR----KDNLVHHFRNP--R-FELIRHDVVEPILLEVD 182 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~--~---V~~l~r~~~~~----~~~~~~~~~~~--~-v~~~~~Dv~~~~~~~iD 182 (263)
+..+|.|+||+|.||.+++-.|+..+. + +.+.+...+.. .....+..... - -.....+-....+.+.|
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daD 110 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 110 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCC
Confidence 456899999999999999999998764 2 66655433322 22222221111 1 11222222345678999
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-C--CeEEEEcC
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-G--AKFLLTST 230 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~--~~iV~vSS 230 (263)
+||-.||.. .....+-.+.++.|+.-...+.+.+.+. + ..++.+|.
T Consensus 111 vVVitag~p--rkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN 159 (375)
T 7mdh_A 111 WALLIGAKP--RGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 159 (375)
T ss_dssp EEEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEEEcCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 999999853 2234556788999999999999998875 4 36666665
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00072 Score=54.46 Aligned_cols=70 Identities=19% Similarity=0.216 Sum_probs=51.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----c--cCCCcEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----I--LLEVDQIY 185 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~--~~~iD~Vi 185 (263)
..+++|+|+| .|.+|..+++.|.+. |++|++++++++.... +.. ..+..+.+|..+. . ..++|+||
T Consensus 37 ~~~~~v~IiG-~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~-~~~----~g~~~~~gd~~~~~~l~~~~~~~~ad~vi 110 (183)
T 3c85_A 37 PGHAQVLILG-MGRIGTGAYDELRARYGKISLGIEIREEAAQQ-HRS----EGRNVISGDATDPDFWERILDTGHVKLVL 110 (183)
T ss_dssp CTTCSEEEEC-CSHHHHHHHHHHHHHHCSCEEEEESCHHHHHH-HHH----TTCCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHhccCCeEEEEECCHHHHHH-HHH----CCCCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence 4566899998 699999999999999 9999999986543322 211 2345666776543 2 45789999
Q ss_pred EccC
Q 024766 186 HLAC 189 (263)
Q Consensus 186 ~~Ag 189 (263)
.+.+
T Consensus 111 ~~~~ 114 (183)
T 3c85_A 111 LAMP 114 (183)
T ss_dssp ECCS
T ss_pred EeCC
Confidence 8874
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0023 Score=56.77 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=70.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcC-----CCceEEEE-ccccccccCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR-----NPRFELIR-HDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~~-~Dv~~~~~~~iD~Vi~~A 188 (263)
+++|.|+|| |.+|..++..|+..|. +|+++|++.+..+........ .....+.. .|. +.+.+.|+||.++
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~--~al~~aD~Vi~a~ 80 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY--DDLAGADVVIVTA 80 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG--GGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH--HHhCCCCEEEEeC
Confidence 358999997 9999999999999998 888999876544322221111 11222222 454 5678999999999
Q ss_pred CCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 189 CPASPVHYK---YNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 189 g~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
|........ ..-.+.+..|..-...+.+.+.+... .++++|.
T Consensus 81 g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 127 (322)
T 1t2d_A 81 GFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 127 (322)
T ss_dssp SCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 853221110 00234466777777778777766643 4444443
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00031 Score=58.46 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=51.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~~iD~Vi~~Ag 189 (263)
|+|+|+|+ |.+|+.+++.|.+.|++|++++++++...+.. + ...+.++.+|.+++ ...+.|+||-+.+
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~-~---~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 74 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFA-K---KLKATIIHGDGSHKEILRDAEVSKNDVVVILTP 74 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHH-H---HSSSEEEESCTTSHHHHHHHTCCTTCEEEECCS
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHH-H---HcCCeEEEcCCCCHHHHHhcCcccCCEEEEecC
Confidence 46999995 99999999999999999999998654332211 1 12467888998775 2457899988764
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00023 Score=58.78 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=46.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh---cCCCceEEEEccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
++|+|+||+|.+|..+++.|++.|++|++++|+.+......... .....+. . +..++.+.++|+||++.
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~D~Vi~~~ 72 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT--G-MKNEDAAEACDIAVLTI 72 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE--E-EEHHHHHHHCSEEEECS
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC--h-hhHHHHHhcCCEEEEeC
Confidence 37999999999999999999999999999998754432221111 0101222 1 22223456799999998
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00011 Score=65.50 Aligned_cols=39 Identities=15% Similarity=0.044 Sum_probs=34.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~ 152 (263)
..+++|+|+||+|+||..+++.+...|++|++++++.++
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~ 192 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEK 192 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 367899999999999999999999999999999886443
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00022 Score=64.36 Aligned_cols=75 Identities=23% Similarity=0.329 Sum_probs=50.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcc--ccccccCCCcEEEEccCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHD--VVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D--v~~~~~~~iD~Vi~~Ag~~ 191 (263)
+++++|+|+|+ |.+|..++..+...|++|++++|+.++.+. +.+.. ...+..+..+ ...+.+.++|+||++++..
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~ 241 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSY-LETLF-GSRVELLYSNSAEIETAVAEADLLIGAVLVP 241 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHH-GGGSEEEECCHHHHHHHHHTCSEEEECCCCT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHH-HHHhh-CceeEeeeCCHHHHHHHHcCCCEEEECCCcC
Confidence 55689999998 999999999999999999999987554332 22221 1122222221 1223445799999999753
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00028 Score=62.57 Aligned_cols=78 Identities=12% Similarity=0.019 Sum_probs=51.1
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecC---Cccchhhhhhhc--CCCceEEEEcccc---ccccCCCc
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF---FTGRKDNLVHHF--RNPRFELIRHDVV---EPILLEVD 182 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~---~~~~~~~~~~~~--~~~~v~~~~~Dv~---~~~~~~iD 182 (263)
..+++|+++|+|+ |++|++++..|++.|. +|+++.|+ .++.++...+.. ....+..+..+-. ...+.+.|
T Consensus 144 ~~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D 222 (312)
T 3t4e_A 144 FDMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASAD 222 (312)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred CCcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence 3467899999995 9999999999999998 89999887 332222222211 1122333333221 23355789
Q ss_pred EEEEccCC
Q 024766 183 QIYHLACP 190 (263)
Q Consensus 183 ~Vi~~Ag~ 190 (263)
+|||+...
T Consensus 223 iIINaTp~ 230 (312)
T 3t4e_A 223 ILTNGTKV 230 (312)
T ss_dssp EEEECSST
T ss_pred EEEECCcC
Confidence 99999654
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00012 Score=65.70 Aligned_cols=71 Identities=17% Similarity=0.112 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---ccccc----ccCCCcEEEEc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEP----ILLEVDQIYHL 187 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~----~~~~iD~Vi~~ 187 (263)
.+++|+|+||+|+||..++..+...|++|++++++.++.+ .+.+. +... .+.. |..+. .-.++|++|+|
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~l-Ga~~--~~~~~~~~~~~~~~~~~~~g~Dvvid~ 242 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCE-ACERL-GAKR--GINYRSEDFAAVIKAETGQGVDIILDM 242 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHH-TCSE--EEETTTSCHHHHHHHHHSSCEEEEEES
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHhc-CCCE--EEeCCchHHHHHHHHHhCCCceEEEEC
Confidence 6789999999999999999999999999999998655432 22222 2221 2221 11111 11369999999
Q ss_pred cC
Q 024766 188 AC 189 (263)
Q Consensus 188 Ag 189 (263)
+|
T Consensus 243 ~g 244 (353)
T 4dup_A 243 IG 244 (353)
T ss_dssp CC
T ss_pred CC
Confidence 97
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00047 Score=59.93 Aligned_cols=91 Identities=15% Similarity=0.316 Sum_probs=52.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHh-CCCeEEEE-ecCCccc-hhhhhhhcC--CCceEEEEccccccccCCCcEEEEccCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLID-RGDEVIVI-DNFFTGR-KDNLVHHFR--NPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~-~G~~V~~l-~r~~~~~-~~~~~~~~~--~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
++|.|+|++|.+|+.+++.+.+ .|.+++.+ ++..+.. ...+.+... ...+.. ..|+ +..+.++|+||+++.+
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~-~~dl-~~~l~~~DvVIDft~p- 82 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV-QSSL-DAVKDDFDVFIDFTRP- 82 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE-ESCS-TTTTTSCSEEEECSCH-
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee-cCCH-HHHhcCCCEEEEcCCh-
Confidence 4899999999999999999885 46677744 4433221 111111111 112211 2233 3445679999988831
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL 227 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~ 227 (263)
. .+...++.|.++|+++|.
T Consensus 83 ---------~--------~~~~~~~~a~~~G~~vVi 101 (273)
T 1dih_A 83 ---------E--------GTLNHLAFCRQHGKGMVI 101 (273)
T ss_dssp ---------H--------HHHHHHHHHHHTTCEEEE
T ss_pred ---------H--------HHHHHHHHHHhCCCCEEE
Confidence 1 334556666666666444
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00043 Score=61.73 Aligned_cols=71 Identities=20% Similarity=0.180 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccchhhhhhhcCCCceEEEEc---ccc---cccc--CCCcEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVV---EPIL--LEVDQIY 185 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~---~~~~--~~iD~Vi 185 (263)
.+++|+|+|++|+||..+++.+... |++|++++++.++.+ .+.+ +... ..+.. |.. .... .++|+||
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~-~~~~-~g~~--~~~~~~~~~~~~~~~~~~~~~~~d~vi 245 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVE-AAKR-AGAD--YVINASMQDPLAEIRRITESKGVDAVI 245 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHH-HHHH-HTCS--EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHH-HHHH-hCCC--EEecCCCccHHHHHHHHhcCCCceEEE
Confidence 6789999999999999999999999 999999988654332 2222 2221 11221 111 1112 4699999
Q ss_pred EccC
Q 024766 186 HLAC 189 (263)
Q Consensus 186 ~~Ag 189 (263)
+|+|
T Consensus 246 ~~~g 249 (347)
T 1jvb_A 246 DLNN 249 (347)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9997
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00031 Score=62.65 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc--ccccc---cc--CCCcEEEEc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH--DVVEP---IL--LEVDQIYHL 187 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~--Dv~~~---~~--~~iD~Vi~~ 187 (263)
.+++|+|+||+|+||...+..+...|++|++++++.++.+ .+.+. +... ++.. |+.+. .. .++|++|+|
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~~-ga~~--v~~~~~~~~~~v~~~~~~~g~Dvvid~ 234 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATE-FVKSV-GADI--VLPLEEGWAKAVREATGGAGVDMVVDP 234 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHH-TCSE--EEESSTTHHHHHHHHTTTSCEEEEEES
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHhc-CCcE--EecCchhHHHHHHHHhCCCCceEEEEC
Confidence 5789999999999999999999999999999998655442 22222 2222 2222 22221 11 259999999
Q ss_pred cC
Q 024766 188 AC 189 (263)
Q Consensus 188 Ag 189 (263)
+|
T Consensus 235 ~g 236 (342)
T 4eye_A 235 IG 236 (342)
T ss_dssp CC
T ss_pred Cc
Confidence 97
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00031 Score=61.25 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=49.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
.+++|+++|+|+ |++|++++..|++.|+ +|+++.|+.++..+... .+.....+-......+.|+|||+...
T Consensus 114 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~------~~~~~~~~~~~~~~~~aDiVInaTp~ 185 (277)
T 3don_A 114 GIEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWSL------NINKINLSHAESHLDEFDIIINTTPA 185 (277)
T ss_dssp TGGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS------CCEEECHHHHHHTGGGCSEEEECCC-
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH------hcccccHhhHHHHhcCCCEEEECccC
Confidence 457899999995 8999999999999999 89999887554332221 22333333333345679999998643
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0042 Score=54.50 Aligned_cols=102 Identities=21% Similarity=0.196 Sum_probs=66.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhh-h--hhhcC-CCceEEEEc-cccccccCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDN-L--VHHFR-NPRFELIRH-DVVEPILLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~-~--~~~~~-~~~v~~~~~-Dv~~~~~~~iD~Vi~~A 188 (263)
.++|.|+|+ |.+|..++..|+..|. +|++++++.+..... . .+... .....+... | ...+.+.|+||-++
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~aD~Vii~v 83 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD--PEICRDADMVVITA 83 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC--GGGGTTCSEEEECC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC--HHHhCCCCEEEECC
Confidence 468999996 9999999999999998 999999875333211 1 11110 012222222 2 23567899999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG 222 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~ 222 (263)
+.... ...+-.+.+..|......+++.+++.+
T Consensus 84 ~~~~~--~g~~r~~~~~~n~~~~~~~~~~i~~~~ 115 (319)
T 1lld_A 84 GPRQK--PGQSRLELVGATVNILKAIMPNLVKVA 115 (319)
T ss_dssp CCCCC--TTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 74322 223455667788888778877776654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0002 Score=63.66 Aligned_cols=72 Identities=11% Similarity=0.082 Sum_probs=49.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---ccccc---cc--CCCcEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEP---IL--LEVDQIY 185 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~---~~--~~iD~Vi 185 (263)
..+++|+|+||+|.||...+..+...|++|++++++.++.+ .+.+. +... .+.. |+.+. .. .++|++|
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~l-ga~~--~~~~~~~~~~~~~~~~~~~~g~Dvvi 218 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTE-ELLRL-GAAY--VIDTSTAPLYETVMELTNGIGADAAI 218 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHH-HHHHH-TCSE--EEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHhC-CCcE--EEeCCcccHHHHHHHHhCCCCCcEEE
Confidence 35789999999999999999988889999999998766543 22222 2221 2221 22221 11 2699999
Q ss_pred EccC
Q 024766 186 HLAC 189 (263)
Q Consensus 186 ~~Ag 189 (263)
+|+|
T Consensus 219 d~~g 222 (340)
T 3gms_A 219 DSIG 222 (340)
T ss_dssp ESSC
T ss_pred ECCC
Confidence 9997
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0027 Score=56.17 Aligned_cols=110 Identities=18% Similarity=0.205 Sum_probs=71.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhh---cC--CCceEEEEccccccccCCCcEEEEc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHH---FR--NPRFELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~---~~--~~~v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
+.++|.|+|+ |.+|..++..|+..|. +|+++|++.+......... .. ...+.+.. |. ...+.+.|+||.+
T Consensus 5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~~-~~al~~aDvViia 81 (316)
T 1ldn_A 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-GD-YDDCRDADLVVIC 81 (316)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-CC-GGGTTTCSEEEEC
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-Cc-HHHhCCCCEEEEc
Confidence 3468999997 9999999999998875 8999998754332222211 11 11344443 32 3467899999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vS 229 (263)
++....... .-.+.+..|..-...+++.+.+... .++++|
T Consensus 82 ~~~~~~~g~--~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 82 AGANQKPGE--TRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp CSCCCCTTT--CSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred CCCCCCCCC--CHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 986543322 2234467787777888888777654 444443
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00015 Score=64.28 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---ccccc---cc--CCCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEP---IL--LEVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~---~~--~~iD~Vi~ 186 (263)
.+++|+|+||+|+||...+..+...|++|++++++.++.+ .+.+ ++.. ..+.. |..+. .. .++|++|+
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~-~ga~--~~~~~~~~~~~~~~~~~~~~~g~D~vid 223 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLK-IAKE-YGAE--YLINASKEDILRQVLKFTNGKGVDASFD 223 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHH-TTCS--EEEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHH-cCCc--EEEeCCCchHHHHHHHHhCCCCceEEEE
Confidence 5779999999999999999999999999999998654332 2222 2221 12222 22111 11 25999999
Q ss_pred ccC
Q 024766 187 LAC 189 (263)
Q Consensus 187 ~Ag 189 (263)
|+|
T Consensus 224 ~~g 226 (334)
T 3qwb_A 224 SVG 226 (334)
T ss_dssp CCG
T ss_pred CCC
Confidence 997
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00091 Score=59.95 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=57.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC---eEEEEe-cCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD---EVIVID-NFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~---~V~~l~-r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~ 192 (263)
++|.|.||+|.||+.+++.|.++++ +++.+. ++..... .. +....+.+...|. ..+.++|+||.|.|..
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~--~~--~~g~~i~~~~~~~--~~~~~~DvV~~a~g~~- 79 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQR--MG--FAESSLRVGDVDS--FDFSSVGLAFFAAAAE- 79 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCE--EE--ETTEEEECEEGGG--CCGGGCSEEEECSCHH-
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCc--cc--cCCcceEEecCCH--HHhcCCCEEEEcCCcH-
Confidence 5799999999999999999997654 455543 2211110 00 1222233322232 2356899999998521
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
.+...+..+.+.|+++|.+|+..
T Consensus 80 -----------------~s~~~a~~~~~aG~kvId~Sa~~ 102 (340)
T 2hjs_A 80 -----------------VSRAHAERARAAGCSVIDLSGAL 102 (340)
T ss_dssp -----------------HHHHHHHHHHHTTCEEEETTCTT
T ss_pred -----------------HHHHHHHHHHHCCCEEEEeCCCC
Confidence 13456677778888888888764
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00015 Score=64.19 Aligned_cols=71 Identities=18% Similarity=0.056 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---ccccc---cc--CCCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEP---IL--LEVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~---~~--~~iD~Vi~ 186 (263)
.+++|+|+||+|.||...+..+...|++|++++++.++.+ .+.+ ++.. ..++. |..+. .. .++|++|+
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~-~Ga~--~~~~~~~~~~~~~~~~~~~~~g~Dvvid 215 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAA-HAKA-LGAW--ETIDYSHEDVAKRVLELTDGKKCPVVYD 215 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHH-HHHH-HTCS--EEEETTTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHH-cCCC--EEEeCCCccHHHHHHHHhCCCCceEEEE
Confidence 5789999999999999999999999999999998654332 2222 2221 12222 11111 11 25999999
Q ss_pred ccC
Q 024766 187 LAC 189 (263)
Q Consensus 187 ~Ag 189 (263)
|+|
T Consensus 216 ~~g 218 (325)
T 3jyn_A 216 GVG 218 (325)
T ss_dssp SSC
T ss_pred CCC
Confidence 997
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00087 Score=51.80 Aligned_cols=67 Identities=19% Similarity=0.153 Sum_probs=51.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------cCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------~~~iD~Vi~~Ag 189 (263)
++++|.| .|.+|..+++.|.+.|++|++++++++.... +. ...+..+.+|.+++. ..+.|+||-+.+
T Consensus 8 ~~viIiG-~G~~G~~la~~L~~~g~~v~vid~~~~~~~~-~~----~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 8 NHALLVG-YGRVGSLLGEKLLASDIPLVVIETSRTRVDE-LR----ERGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp SCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESCHHHHHH-HH----HTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCEEEEC-cCHHHHHHHHHHHHCCCCEEEEECCHHHHHH-HH----HcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 3789999 5999999999999999999999986544322 11 235678889987763 346899998873
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0038 Score=55.02 Aligned_cols=108 Identities=13% Similarity=0.109 Sum_probs=74.5
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcC-----CCceEEEE-ccccccccCCCcEEEEccCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR-----NPRFELIR-HDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~~-~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
+|.|+|| |.+|..++..|+..|. +|+++|++.++.+....+... .....+.. .|. ..+.+.|+||..+|.
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~--~a~~~aD~Vi~~ag~ 77 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY--EDMRGSDIVLVTAGI 77 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG--GGGTTCSEEEECCSC
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH--HHhCCCCEEEEeCCC
Confidence 4789997 9999999999998887 799999876554432222211 12333333 453 468899999999986
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
.... ...-...+..|..-...+++.+.+... .++++|.
T Consensus 78 ~~k~--G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 78 GRKP--GMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp CCCS--SCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCC--CCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4322 334456688899999999998877653 5666654
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.004 Score=55.08 Aligned_cols=108 Identities=16% Similarity=0.115 Sum_probs=69.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhh---hcC-CCceEEEEccccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVH---HFR-NPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~---~~~-~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
++|.|+|+ |.+|..++..|++.|. +|++++++.+........ ... .....+...| ...+.+.|+||-+++.
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d--~~~~~~aDvViiav~~ 77 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAGV 77 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC--HHHhCCCCEEEEccCC
Confidence 47899997 9999999999999998 999999875433322111 110 0112222234 2456789999999975
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vS 229 (263)
... ....-.+.+..|......+++.+.+... .+|.+|
T Consensus 78 ~~~--~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t 116 (319)
T 1a5z_A 78 PQK--PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (319)
T ss_dssp CCC--SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCC--CCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 332 1223445677888888888888776543 455543
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0048 Score=54.39 Aligned_cols=109 Identities=13% Similarity=0.058 Sum_probs=69.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhh------cC-CCceEEEEccccccccCCCcEEEEc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHH------FR-NPRFELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~------~~-~~~v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
.++|.|+|+ |.+|..++..|++.|. +|++++++.+..+...... .. ..++.. ..|. ..+.+.|+||-+
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~-t~d~--~a~~~aDiVi~a 79 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIG-TDDY--ADISGSDVVIIT 79 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEE-ESCG--GGGTTCSEEEEC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEE-CCCH--HHhCCCCEEEEe
Confidence 468999996 9999999999999998 9999998765444321111 01 122222 2344 457789999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
+|...... ..-.+.+..|......+++.+.+... .++++|.
T Consensus 80 vg~p~~~g--~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 80 ASIPGRPK--DDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp CCCSSCCS--SCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred CCCCCCCC--CcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 98543222 22233455677767777777666543 4554544
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0012 Score=56.62 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=64.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCcc------------------chhhhhh----hcCCCceEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTG------------------RKDNLVH----HFRNPRFELI 169 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~------------------~~~~~~~----~~~~~~v~~~ 169 (263)
.++.++|+|.| .|++|.++++.|+..|. ++.++|...-. +.+.+.+ .-...+++.+
T Consensus 25 ~l~~~~VlvvG-~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~ 103 (251)
T 1zud_1 25 KLLDSQVLIIG-LGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL 103 (251)
T ss_dssp HHHTCEEEEEC-CSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhcCcEEEEc-cCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 46778999999 58899999999999998 77887654211 1111111 1112345555
Q ss_pred Eccccc----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 170 RHDVVE----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 170 ~~Dv~~----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
..++.+ ..+.+.|+||.+.. +.. .-..+.+.+.+.++.+|..+..+.+|
T Consensus 104 ~~~~~~~~~~~~~~~~DvVi~~~d---------~~~--------~r~~l~~~~~~~~~p~i~~~~~g~~G 156 (251)
T 1zud_1 104 QQRLTGEALKDAVARADVVLDCTD---------NMA--------TRQEINAACVALNTPLITASAVGFGG 156 (251)
T ss_dssp CSCCCHHHHHHHHHHCSEEEECCS---------SHH--------HHHHHHHHHHHTTCCEEEEEEEBTEE
T ss_pred eccCCHHHHHHHHhcCCEEEECCC---------CHH--------HHHHHHHHHHHhCCCEEEEeccccce
Confidence 444433 23456899999871 221 12245566777777788776655444
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0064 Score=54.02 Aligned_cols=108 Identities=12% Similarity=0.063 Sum_probs=70.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhh---hhhc----CCCceEEEEccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNL---VHHF----RNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~---~~~~----~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
++|.|+|| |.+|..++..|+..|. +|++++++.+..+... .+.. ...++.. ..|. +.+.+.|+||-++
T Consensus 15 ~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~-t~d~--~al~~aD~VI~av 90 (328)
T 2hjr_A 15 KKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFG-ENNY--EYLQNSDVVIITA 90 (328)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEE-ESCG--GGGTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEE-CCCH--HHHCCCCEEEEcC
Confidence 58999997 9999999999999998 9999998865544321 1111 1222322 2454 4678999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
|...... ..-.+.+..|+.-...+.+.+.+... .++++|.
T Consensus 91 g~p~k~g--~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN 132 (328)
T 2hjr_A 91 GVPRKPN--MTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN 132 (328)
T ss_dssp SCCCCTT--CCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred CCCCCCC--CchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 8543211 11123456777777788887766543 4444443
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00022 Score=63.49 Aligned_cols=71 Identities=10% Similarity=-0.004 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---ccccc---cc--CCCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEP---IL--LEVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~---~~--~~iD~Vi~ 186 (263)
.+++|+|+|++|+||..+++.+...|++|++++++.++.+ .+.+ ++... .++. |+.+. .. .++|+||+
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~-~~~~-~ga~~--~~d~~~~~~~~~~~~~~~~~~~d~vi~ 241 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLR-RAKA-LGADE--TVNYTHPDWPKEVRRLTGGKGADKVVD 241 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHH-HHHH-HTCSE--EEETTSTTHHHHHHHHTTTTCEEEEEE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHh-cCCCE--EEcCCcccHHHHHHHHhCCCCceEEEE
Confidence 5789999999999999999999999999999998654332 2222 22221 2221 11111 11 26999999
Q ss_pred ccC
Q 024766 187 LAC 189 (263)
Q Consensus 187 ~Ag 189 (263)
++|
T Consensus 242 ~~g 244 (343)
T 2eih_A 242 HTG 244 (343)
T ss_dssp SSC
T ss_pred CCC
Confidence 997
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0037 Score=55.86 Aligned_cols=93 Identities=16% Similarity=0.229 Sum_probs=58.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCC---CeEEEEecC-CccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRG---DEVIVIDNF-FTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G---~~V~~l~r~-~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
+++|.|.||+|.||+.+++.|.+++ .+++.+... ..... +. +....+.+...| ...+.++|+||-|.|..
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~--~~--~~~~~i~~~~~~--~~~~~~vDvVf~a~g~~ 76 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKT--YR--FNGKTVRVQNVE--EFDWSQVHIALFSAGGE 76 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCE--EE--ETTEEEEEEEGG--GCCGGGCSEEEECSCHH
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCc--ee--ecCceeEEecCC--hHHhcCCCEEEECCCch
Confidence 4589999999999999999999884 356665421 11110 10 222233333333 23456899999998521
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
.+...+..+.+.|+++|-.|+..
T Consensus 77 ------------------~s~~~a~~~~~~G~~vId~s~~~ 99 (336)
T 2r00_A 77 ------------------LSAKWAPIAAEAGVVVIDNTSHF 99 (336)
T ss_dssp ------------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred ------------------HHHHHHHHHHHcCCEEEEcCCcc
Confidence 13345666777888888888863
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0087 Score=52.63 Aligned_cols=107 Identities=16% Similarity=0.184 Sum_probs=72.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhh--cCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHH--FRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~--~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
+++|.|+|| |.+|..++..|+..|. +|+++|++.+ ......+. +...++.. ..|. ..+.+.|+||..+|..
T Consensus 14 ~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~a~dl~~~~~~~i~~-t~d~--~~l~~aD~Vi~aag~~ 88 (303)
T 2i6t_A 14 VNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG-TKGATMDLEIFNLPNVEI-SKDL--SASAHSKVVIFTVNSL 88 (303)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC------CHHHHHHHTCTTEEE-ESCG--GGGTTCSEEEECCCC-
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHHHHHHhhhcCCCeEE-eCCH--HHHCCCCEEEEcCCCC
Confidence 468999995 9999999999999998 9999998764 32222211 23335554 3564 5578999999999874
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
. ....-.+.+..|..-...+++.+.+... .++++|.
T Consensus 89 ~---pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN 126 (303)
T 2i6t_A 89 G---SSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ 126 (303)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred C---CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 2 2234456678888888888888877653 4555554
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00054 Score=62.21 Aligned_cols=76 Identities=20% Similarity=0.168 Sum_probs=51.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEE--ccccccccCCCcEEEEccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIR--HDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~--~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
.+.+++|+|+|+ |.||..+++.+...|.+|++++++.+..+. +.+.+. ..+.... .+..++.+.+.|+||++++.
T Consensus 165 ~l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~-~~~~~g-~~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 165 GVEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQ-LDAEFC-GRIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp TBCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHTT-TSSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHH-HHHhcC-CeeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 467899999997 999999999999999999999986543322 222222 1221111 11123345579999999874
Q ss_pred C
Q 024766 191 A 191 (263)
Q Consensus 191 ~ 191 (263)
.
T Consensus 242 p 242 (377)
T 2vhw_A 242 P 242 (377)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0011 Score=55.92 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=60.7
Q ss_pred CCCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEE
Q 024766 107 RVPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYH 186 (263)
Q Consensus 107 ~~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~ 186 (263)
-.|+..++++++|+|.| +|-+|...++.|++.|++|++++..... .+........+.++..+..+..+.++|.||-
T Consensus 22 ~~Pifl~L~gk~VLVVG-gG~va~~ka~~Ll~~GA~VtVvap~~~~---~l~~l~~~~~i~~i~~~~~~~dL~~adLVIa 97 (223)
T 3dfz_A 22 MYTVMLDLKGRSVLVVG-GGTIATRRIKGFLQEGAAITVVAPTVSA---EINEWEAKGQLRVKRKKVGEEDLLNVFFIVV 97 (223)
T ss_dssp CCEEEECCTTCCEEEEC-CSHHHHHHHHHHGGGCCCEEEECSSCCH---HHHHHHHTTSCEEECSCCCGGGSSSCSEEEE
T ss_pred ccccEEEcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCCCH---HHHHHHHcCCcEEEECCCCHhHhCCCCEEEE
Confidence 35777789999999999 5899999999999999999999865332 2333323456777777777778889999997
Q ss_pred cc
Q 024766 187 LA 188 (263)
Q Consensus 187 ~A 188 (263)
+.
T Consensus 98 AT 99 (223)
T 3dfz_A 98 AT 99 (223)
T ss_dssp CC
T ss_pred CC
Confidence 66
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0016 Score=58.65 Aligned_cols=103 Identities=18% Similarity=0.173 Sum_probs=65.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch----------------------hhhhhhcCCCceEE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK----------------------DNLVHHFRNPRFEL 168 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~----------------------~~~~~~~~~~~v~~ 168 (263)
..++.++|+|.| .|++|.++++.|+..|. ++.++|+..-... +.+.+.-...+++.
T Consensus 114 ~~L~~~~VlvvG-~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~ 192 (353)
T 3h5n_A 114 DKLKNAKVVILG-CGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSE 192 (353)
T ss_dssp HHHHTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred HHHhCCeEEEEC-CCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEE
Confidence 456788999999 59999999999999998 8888887531111 11111112345666
Q ss_pred EEccccccc----cCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCc
Q 024766 169 IRHDVVEPI----LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (263)
Q Consensus 169 ~~~Dv~~~~----~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~ 231 (263)
+..++.+.. +.+.|+||.+.. ++.. .-..+-++|.+.++.+|..+..
T Consensus 193 ~~~~i~~~~~~~~~~~~DlVvd~~D---------n~~~-------~r~~ln~~c~~~~~p~i~~~~~ 243 (353)
T 3h5n_A 193 IALNINDYTDLHKVPEADIWVVSAD---------HPFN-------LINWVNKYCVRANQPYINAGYV 243 (353)
T ss_dssp EECCCCSGGGGGGSCCCSEEEECCC---------CSTT-------HHHHHHHHHHHTTCCEEEEEEE
T ss_pred eecccCchhhhhHhccCCEEEEecC---------ChHH-------HHHHHHHHHHHhCCCEEEEEEe
Confidence 666554332 678999999772 1110 1113446778888877776543
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0004 Score=60.61 Aligned_cols=69 Identities=13% Similarity=0.065 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc----cccccccCCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH----DVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~----Dv~~~~~~~iD~Vi~~Ag 189 (263)
.+++|+|+|++|++|...+..+...|++|++++++.++.+. +.+ ++.. ..+.. |+.+ .+.++|++|+ +|
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~-~~~-~ga~--~~~~~~~~~~~~~-~~~~~d~vid-~g 197 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLAL-PLA-LGAE--EAATYAEVPERAK-AWGGLDLVLE-VR 197 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHH-HHH-TTCS--EEEEGGGHHHHHH-HTTSEEEEEE-CS
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHh-cCCC--EEEECCcchhHHH-HhcCceEEEE-CC
Confidence 57899999999999999999999999999999987554432 222 2222 12221 1111 2267999999 86
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0022 Score=57.47 Aligned_cols=93 Identities=10% Similarity=0.143 Sum_probs=59.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhh---hhcCC-CceEEEEccccccccCCCcEEEEccCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLV---HHFRN-PRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~---~~~~~-~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
+++|.|.||+|.||+.+++.|.+.+. +++.+.+.... ..... ..+.. ..+.+...| . +.++|+||.|+|.
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~-g~~~~~~~~~~~g~~~~~~~~~~---~-~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFA-GEPVHFVHPNLRGRTNLKFVPPE---K-LEPADILVLALPH 78 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTT-TSBGGGTCGGGTTTCCCBCBCGG---G-CCCCSEEEECCCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhh-CchhHHhCchhcCcccccccchh---H-hcCCCEEEEcCCc
Confidence 35899999999999999999998765 77776553221 11111 11111 122222222 2 4689999999863
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCc
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~ 231 (263)
.. ...++..+.+.|+++|-.|+.
T Consensus 79 ~~------------------s~~~a~~~~~aG~~VId~Sa~ 101 (345)
T 2ozp_A 79 GV------------------FAREFDRYSALAPVLVDLSAD 101 (345)
T ss_dssp TH------------------HHHTHHHHHTTCSEEEECSST
T ss_pred HH------------------HHHHHHHHHHCCCEEEEcCcc
Confidence 21 234566677788898888885
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0003 Score=63.28 Aligned_cols=72 Identities=18% Similarity=0.065 Sum_probs=48.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---cccccc---c-CCCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEPI---L-LEVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~~---~-~~iD~Vi~ 186 (263)
..+++|+|+||+|+||..++..+...|++|++++++.++.+ .+.+ ++.. ..+.. |+.+.. . .++|+||+
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~-~~~~-~Ga~--~~~~~~~~~~~~~~~~~~~~g~D~vid 237 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSA-FLKS-LGCD--RPINYKTEPVGTVLKQEYPEGVDVVYE 237 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHH-HHHH-TTCS--EEEETTTSCHHHHHHHHCTTCEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHH-HHHH-cCCc--EEEecCChhHHHHHHHhcCCCCCEEEE
Confidence 35789999999999999999999999999999998644332 2222 2222 12221 221111 1 35899999
Q ss_pred ccC
Q 024766 187 LAC 189 (263)
Q Consensus 187 ~Ag 189 (263)
|+|
T Consensus 238 ~~g 240 (362)
T 2c0c_A 238 SVG 240 (362)
T ss_dssp CSC
T ss_pred CCC
Confidence 996
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0023 Score=57.44 Aligned_cols=105 Identities=14% Similarity=0.168 Sum_probs=68.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCc------------------cchhhh----hhhcCCCceEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFT------------------GRKDNL----VHHFRNPRFELI 169 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~------------------~~~~~~----~~~~~~~~v~~~ 169 (263)
.++.++|+|.| .|++|.++++.|+..|. ++.++|...- .+.+.+ .+.-...++..+
T Consensus 33 ~L~~~~VlivG-~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~ 111 (346)
T 1y8q_A 33 RLRASRVLLVG-LKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVD 111 (346)
T ss_dssp HHHTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEE
T ss_pred HHhCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEE
Confidence 45678999999 69999999999999998 8888864310 011111 111123355666
Q ss_pred Ecccc---ccccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 170 RHDVV---EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 170 ~~Dv~---~~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
..++. +..+.+.|+||.+. ++. ..-..+-+.|.+.++.+|..++.+.+|
T Consensus 112 ~~~~~~~~~~~~~~~dvVv~~~---------d~~--------~~r~~ln~~~~~~~ip~i~~~~~G~~G 163 (346)
T 1y8q_A 112 TEDIEKKPESFFTQFDAVCLTC---------CSR--------DVIVKVDQICHKNSIKFFTGDVFGYHG 163 (346)
T ss_dssp CSCGGGCCHHHHTTCSEEEEES---------CCH--------HHHHHHHHHHHHTTCEEEEEEEEBTEE
T ss_pred ecccCcchHHHhcCCCEEEEcC---------CCH--------HHHHHHHHHHHHcCCCEEEEeecccEE
Confidence 65553 33567899999876 122 122345567778888888887777666
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0029 Score=54.86 Aligned_cols=66 Identities=15% Similarity=0.096 Sum_probs=48.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
+++++|+|+ |+.|++++..|++.|.+|+++.|+.++..+.. +. + +.....+ + +.+.|+|||+....
T Consensus 118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~-~---~~~~~~~--~--l~~~DiVInaTp~G 183 (269)
T 3phh_A 118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RL-G---CDCFMEP--P--KSAFDLIINATSAS 183 (269)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HH-T---CEEESSC--C--SSCCSEEEECCTTC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC-C---CeEecHH--H--hccCCEEEEcccCC
Confidence 789999994 99999999999999999999998876554443 22 2 2232221 1 22899999997543
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.96 E-value=0.005 Score=54.03 Aligned_cols=110 Identities=17% Similarity=0.173 Sum_probs=68.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccchhhhhhh---c--CCCceEEEEccccccccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHH---F--RNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~~~~~~~---~--~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
++|.|+| +|.+|..++..|++.| .+|++++++.+......... . ....+.....|. +.+.+.|+||-+++
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~--~~~~~aDvViiav~ 78 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW--AALADADVVISTLG 78 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG--GGGTTCSEEEECCS
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH--HHhCCCCEEEEecC
Confidence 5899999 8999999999999999 79999998754433222111 0 112334433454 45678999999997
Q ss_pred CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Q 024766 190 PASPVH--YKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (263)
Q Consensus 190 ~~~~~~--~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vS 229 (263)
...... ....-...+..|+.-...+++.+.+... .++++|
T Consensus 79 ~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp CGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred CcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 533100 0011123456777777788887776543 444433
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0053 Score=55.51 Aligned_cols=93 Identities=15% Similarity=0.225 Sum_probs=56.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC---eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASP 193 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~ 193 (263)
.+|.|.||||++|.+|++.|.++++ ++..+..... ...... +......+ .++....+.++|+||-|+|..
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~s-aG~~~~--~~~~~~~~--~~~~~~~~~~~Dvvf~a~~~~-- 75 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS-AGKSLK--FKDQDITI--EETTETAFEGVDIALFSAGSS-- 75 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTT-TTCEEE--ETTEEEEE--EECCTTTTTTCSEEEECSCHH--
T ss_pred cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEcccc-CCCcce--ecCCCceE--eeCCHHHhcCCCEEEECCChH--
Confidence 4899999999999999999998755 3344432111 111111 12222222 233334467899999998521
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
.+......+.+.|+++|-.|+..
T Consensus 76 ----------------~s~~~a~~~~~~G~~vIDlSa~~ 98 (366)
T 3pwk_A 76 ----------------TSAKYAPYAVKAGVVVVDNTSYF 98 (366)
T ss_dssp ----------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred ----------------hHHHHHHHHHHCCCEEEEcCCcc
Confidence 12345556667788888888863
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0017 Score=56.61 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
..+++++++|+|+ |+.|++++..|.+.|. +|+++.|+.++..+. .+ .+.....+-.+. + +.|+|||+...
T Consensus 118 ~~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~ka~~L-a~-----~~~~~~~~~l~~-l-~~DivInaTp~ 188 (282)
T 3fbt_A 118 VEIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEKTSEI-YG-----EFKVISYDELSN-L-KGDVIINCTPK 188 (282)
T ss_dssp CCCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHHHHHH-CT-----TSEEEEHHHHTT-C-CCSEEEECSST
T ss_pred CCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH-HH-----hcCcccHHHHHh-c-cCCEEEECCcc
Confidence 3467899999995 8999999999999998 899988865443222 21 122233222223 4 89999999754
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0092 Score=53.33 Aligned_cols=97 Identities=12% Similarity=0.160 Sum_probs=59.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCc--cchhhhh---hhcCCC-ceEEEEc-ccccccc-CCCcEEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFT--GRKDNLV---HHFRNP-RFELIRH-DVVEPIL-LEVDQIYH 186 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~--~~~~~~~---~~~~~~-~v~~~~~-Dv~~~~~-~~iD~Vi~ 186 (263)
|.+|.|.||||.+|.++++.|.+. ..++..+..+.. ...+.+. ..+... ...+... |. ..+ .++|+||-
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~--~~~~~~~Dvvf~ 81 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDI--SEFSPGVDVVFL 81 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSG--GGTCTTCSEEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCH--HHHhcCCCEEEE
Confidence 468999999999999999999985 447777654431 1111121 112221 3333332 22 233 78999998
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
|.+.. -...++..+.+.|+++|-.|+..
T Consensus 82 a~p~~------------------~s~~~~~~~~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 82 ATAHE------------------VSHDLAPQFLEAGCVVFDLSGAF 109 (337)
T ss_dssp CSCHH------------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred CCChH------------------HHHHHHHHHHHCCCEEEEcCCcc
Confidence 88421 12345556667788999998863
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00094 Score=59.98 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=48.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC---ccchhhhhhhcCCCceEEEEc-cccccc---cCCCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF---TGRKDNLVHHFRNPRFELIRH-DVVEPI---LLEVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~---~~~~~~~~~~~~~~~v~~~~~-Dv~~~~---~~~iD~Vi~ 186 (263)
+++++|+|+|+ |+||..++..+...|++|++++++. ++. +.+.+ ++. +.+.. |+.+.. -.++|+||+
T Consensus 179 ~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~-~~~~~-~ga---~~v~~~~~~~~~~~~~~~~d~vid 252 (366)
T 2cdc_A 179 LNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQ-TVIEE-TKT---NYYNSSNGYDKLKDSVGKFDVIID 252 (366)
T ss_dssp STTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHH-HHHHH-HTC---EEEECTTCSHHHHHHHCCEEEEEE
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHH-HHHHH-hCC---ceechHHHHHHHHHhCCCCCEEEE
Confidence 45889999999 9999999999999999999999875 332 22222 222 22211 221111 146999999
Q ss_pred ccCC
Q 024766 187 LACP 190 (263)
Q Consensus 187 ~Ag~ 190 (263)
++|.
T Consensus 253 ~~g~ 256 (366)
T 2cdc_A 253 ATGA 256 (366)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 9973
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0042 Score=54.44 Aligned_cols=102 Identities=17% Similarity=0.210 Sum_probs=64.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCcc-----------------chhh----hhhhcCCCceEEE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTG-----------------RKDN----LVHHFRNPRFELI 169 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~-----------------~~~~----~~~~~~~~~v~~~ 169 (263)
..++.++|+|.| .|++|.++++.|+..|. ++.++|...-. +.+. +.++-...+++.+
T Consensus 32 ~kL~~~~VlVvG-aGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~ 110 (292)
T 3h8v_A 32 EKIRTFAVAIVG-VGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVH 110 (292)
T ss_dssp CGGGGCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHHhCCeEEEEC-cCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEe
Confidence 356778999999 69999999999999997 88888765310 1111 1111123456666
Q ss_pred Eccccc-----ccc-----------CCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCc
Q 024766 170 RHDVVE-----PIL-----------LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (263)
Q Consensus 170 ~~Dv~~-----~~~-----------~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~ 231 (263)
..++.+ ..+ .+.|+||.+. ++.. .-..+-++|.+.++.+|+.+..
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~---------Dn~~--------~R~~in~~c~~~~~Pli~~gv~ 171 (292)
T 3h8v_A 111 NYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCV---------DNFE--------ARMTINTACNELGQTWMESGVS 171 (292)
T ss_dssp CCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECC---------SSHH--------HHHHHHHHHHHHTCCEEEEEEC
T ss_pred cccCCcHHHHHHHhhhhcccccccCCCCCEEEECC---------cchh--------hhhHHHHHHHHhCCCEEEeeee
Confidence 655543 111 4789999887 2222 2234556777778777776543
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.005 Score=57.03 Aligned_cols=77 Identities=13% Similarity=0.005 Sum_probs=54.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCC-CcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLE-VDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~-iD~Vi~~Ag~~ 191 (263)
.+++|+|+|.|. |..|..+++.|.++|++|.+.|+.......... .+....+.+..+...+..+.+ +|.||.+.|+.
T Consensus 6 ~~~~k~v~viG~-G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~-~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~ 83 (451)
T 3lk7_A 6 TFENKKVLVLGL-ARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQ-SLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIP 83 (451)
T ss_dssp TTTTCEEEEECC-TTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHH-HHHHTTCEEEESCCCGGGGGSCEEEEEECTTSC
T ss_pred hcCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEeCCcccCChHHH-HHHhCCCEEEECCChHHhhcCCCCEEEECCcCC
Confidence 357899999996 889999999999999999999986532211111 112234556655554445555 99999998763
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0013 Score=60.25 Aligned_cols=72 Identities=21% Similarity=0.304 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
+.+++|+|.|+ |.+|..+++.|...|. +|++++|+.++..+... .++ .+.+..+-....+.+.|+||.+.+.
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~-~~g---~~~~~~~~l~~~l~~aDvVi~at~~ 237 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELAR-DLG---GEAVRFDELVDHLARSDVVVSATAA 237 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH-HHT---CEECCGGGHHHHHHTCSEEEECCSS
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-HcC---CceecHHhHHHHhcCCCEEEEccCC
Confidence 57899999996 9999999999999998 89999886543322222 222 1222222223345689999999863
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00067 Score=60.46 Aligned_cols=73 Identities=15% Similarity=0.058 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc----ccCCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP----ILLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~----~~~~iD~Vi~~Ag 189 (263)
.+++|+|+||+|.||...+..+...|++|++++++.++. +.+.+ ++...+.-...|+.+. .-.++|+||+|+|
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~~-lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g 226 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETI-EWTKK-MGADIVLNHKESLLNQFKTQGIELVDYVFCTFN 226 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHH-HHHHH-HTCSEEECTTSCHHHHHHHHTCCCEEEEEESSC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHH-HHHHh-cCCcEEEECCccHHHHHHHhCCCCccEEEECCC
Confidence 578999999999999999999989999999998764432 22222 2222111011122111 1135999999986
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.001 Score=59.84 Aligned_cols=72 Identities=17% Similarity=0.171 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcc---ccccccCCCcEEEEccCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHD---VVEPILLEVDQIYHLACP 190 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D---v~~~~~~~iD~Vi~~Ag~ 190 (263)
.+.+|+|+|+ |.||...+..+...|++|++++++.++... +.+.++.. .++..+ ...+...++|+||+++|.
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~-~~~~lGa~--~v~~~~~~~~~~~~~~~~D~vid~~g~ 261 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEE-ALKNFGAD--SFLVSRDQEQMQAAAGTLDGIIDTVSA 261 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHH-HHHTSCCS--EEEETTCHHHHHHTTTCEEEEEECCSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHhcCCc--eEEeccCHHHHHHhhCCCCEEEECCCc
Confidence 6789999995 999999999999999999999987554332 22122222 122221 112223579999999974
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0069 Score=54.40 Aligned_cols=96 Identities=15% Similarity=0.139 Sum_probs=56.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCC----------CceEEEEccccccccC-CCcEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRN----------PRFELIRHDVVEPILL-EVDQI 184 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~----------~~v~~~~~Dv~~~~~~-~iD~V 184 (263)
++|.|.||+|.||+.+++.|.+.+. +|+.+.++.....+........ ..+.+...|..+ ... ++|+|
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~DvV 87 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKH-EEFEDVDIV 87 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTS-GGGTTCCEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHH-HhcCCCCEE
Confidence 5899999999999999999998754 7777754322111112111110 111122223322 224 89999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCc
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~ 231 (263)
|-|.+.. ....++..+.+.|+++|-.|+.
T Consensus 88 ~~atp~~------------------~~~~~a~~~~~aG~~VId~s~~ 116 (354)
T 1ys4_A 88 FSALPSD------------------LAKKFEPEFAKEGKLIFSNASA 116 (354)
T ss_dssp EECCCHH------------------HHHHHHHHHHHTTCEEEECCST
T ss_pred EECCCch------------------HHHHHHHHHHHCCCEEEECCch
Confidence 9998521 1234556666778887766665
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0014 Score=58.94 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=48.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---cccccc--cCCCcEEEEcc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEPI--LLEVDQIYHLA 188 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~~--~~~iD~Vi~~A 188 (263)
..+++|+|+||+|.||...+..+...|++|+++++ .+ +.+.+. .++.. ..+.. |..+.. ..++|++|+++
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~-~~-~~~~~~-~lGa~--~v~~~~~~~~~~~~~~~~g~D~vid~~ 256 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS-QD-ASELVR-KLGAD--DVIDYKSGSVEEQLKSLKPFDFILDNV 256 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC-GG-GHHHHH-HTTCS--EEEETTSSCHHHHHHTSCCBSEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC-hH-HHHHHH-HcCCC--EEEECCchHHHHHHhhcCCCCEEEECC
Confidence 35789999999999999999988889999998873 32 333332 22222 12221 222211 24699999999
Q ss_pred CCC
Q 024766 189 CPA 191 (263)
Q Consensus 189 g~~ 191 (263)
|..
T Consensus 257 g~~ 259 (375)
T 2vn8_A 257 GGS 259 (375)
T ss_dssp CTT
T ss_pred CCh
Confidence 843
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00078 Score=60.05 Aligned_cols=69 Identities=13% Similarity=0.083 Sum_probs=47.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---cccccc---c--CCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEPI---L--LEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~~---~--~~iD~Vi~~A 188 (263)
++++|+||+|.||...+..+...|++|++++++.++.+ .+.+ ++.. ..++. |..+.. . .++|++|+|+
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~-~~~~-~Ga~--~~~~~~~~~~~~~v~~~~~~~g~D~vid~~ 241 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIA-LLKD-IGAA--HVLNEKAPDFEATLREVMKAEQPRIFLDAV 241 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHH-HHHH-HTCS--EEEETTSTTHHHHHHHHHHHHCCCEEEESS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHH-cCCC--EEEECCcHHHHHHHHHHhcCCCCcEEEECC
Confidence 79999999999999999999899999999998655433 2222 2222 12222 221111 1 3699999999
Q ss_pred C
Q 024766 189 C 189 (263)
Q Consensus 189 g 189 (263)
|
T Consensus 242 g 242 (349)
T 3pi7_A 242 T 242 (349)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0026 Score=59.53 Aligned_cols=39 Identities=28% Similarity=0.125 Sum_probs=34.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~ 152 (263)
.+.||+++|||+ |.||+.+++.|...|++|+++++++..
T Consensus 262 ~L~GKtVvVtGa-GgIG~aiA~~Laa~GA~Viv~D~~~~~ 300 (488)
T 3ond_A 262 MIAGKVAVVAGY-GDVGKGCAAALKQAGARVIVTEIDPIC 300 (488)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred cccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 478999999996 599999999999999999999886543
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0058 Score=54.84 Aligned_cols=96 Identities=10% Similarity=0.135 Sum_probs=57.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCC----------CceEEEEccccccccCCCcEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRN----------PRFELIRHDVVEPILLEVDQI 184 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~----------~~v~~~~~Dv~~~~~~~iD~V 184 (263)
+.+|.|.||+|.+|+.+++.|.+... +++.+..+.............. ..+.+...|. ..+.++|+|
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~vDvV 81 (350)
T 2ep5_A 4 KIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNY--EDHKDVDVV 81 (350)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSG--GGGTTCSEE
T ss_pred CcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCH--HHhcCCCEE
Confidence 35899999999999999999988754 7777641111111111111110 1222222232 234689999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCc
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~ 231 (263)
|-|.+.. .+..++..+.+.|+++|-.|+.
T Consensus 82 f~atp~~------------------~s~~~a~~~~~aG~~VId~s~~ 110 (350)
T 2ep5_A 82 LSALPNE------------------LAESIELELVKNGKIVVSNASP 110 (350)
T ss_dssp EECCCHH------------------HHHHHHHHHHHTTCEEEECSST
T ss_pred EECCChH------------------HHHHHHHHHHHCCCEEEECCcc
Confidence 9887421 1345667777888887777765
|
| >2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0037 Score=55.73 Aligned_cols=93 Identities=19% Similarity=0.155 Sum_probs=54.5
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCCCCCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHYK 197 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~~~~ 197 (263)
+|.|.||+|.+|+.+++.|.++++.+..+........+.....+....+.+...|.. .+ ++|+||-|.|..
T Consensus 2 kVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~~g~~i~v~~~~~~--~~-~~DvV~~a~g~~------ 72 (331)
T 2yv3_A 2 RVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEG--PL-PVDLVLASAGGG------ 72 (331)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEECCSS--CC-CCSEEEECSHHH------
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEEEcCceEEEEeCChh--hc-CCCEEEECCCcc------
Confidence 689999999999999999998766433221100000000000012224444444432 24 899999998521
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCc
Q 024766 198 YNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (263)
Q Consensus 198 ~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~ 231 (263)
-+......+.+.|+++|-.|+.
T Consensus 73 ------------~s~~~a~~~~~~G~~vId~s~~ 94 (331)
T 2yv3_A 73 ------------ISRAKALVWAEGGALVVDNSSA 94 (331)
T ss_dssp ------------HHHHHHHHHHHTTCEEEECSSS
T ss_pred ------------chHHHHHHHHHCCCEEEECCCc
Confidence 1223455566778888888886
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0051 Score=55.90 Aligned_cols=100 Identities=11% Similarity=0.052 Sum_probs=58.1
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhc---CC-------CceEEEEccccccccCCCc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHF---RN-------PRFELIRHDVVEPILLEVD 182 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~---~~-------~~v~~~~~Dv~~~~~~~iD 182 (263)
.++.+|.|.||||++|.+|++.|.+... ++..+.-+.+.....+.+.. .. ....+...|..+ .+.++|
T Consensus 17 M~~~kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~-~~~~~D 95 (381)
T 3hsk_A 17 MSVKKAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEG-NFLECD 95 (381)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCT-TGGGCS
T ss_pred CCccEEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhh-hcccCC
Confidence 4456899999999999999998888754 66554322111111121111 00 112222222211 457899
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
+||-|.+.. -+..+...+.+.|+++|=.|+..
T Consensus 96 vvf~alp~~------------------~s~~~~~~~~~~G~~VIDlSa~f 127 (381)
T 3hsk_A 96 VVFSGLDAD------------------VAGDIEKSFVEAGLAVVSNAKNY 127 (381)
T ss_dssp EEEECCCHH------------------HHHHHHHHHHHTTCEEEECCSTT
T ss_pred EEEECCChh------------------HHHHHHHHHHhCCCEEEEcCCcc
Confidence 999998521 12245556667788888888864
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00085 Score=59.75 Aligned_cols=71 Identities=14% Similarity=0.187 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc---cc--CCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP---IL--LEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~---~~--~~iD~Vi~~Ag 189 (263)
.+++|+|+||+|.||...+..+...|++|+++ ++.++ .+.+.+. +...++ ...|..+. .. .++|++|+|+|
T Consensus 150 ~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~-~~~~~~l-Ga~~i~-~~~~~~~~~~~~~~~~g~D~vid~~g 225 (343)
T 3gaz_A 150 DGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSD-LEYVRDL-GATPID-ASREPEDYAAEHTAGQGFDLVYDTLG 225 (343)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHH-HHHHHHH-TSEEEE-TTSCHHHHHHHHHTTSCEEEEEESSC
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHH-HHHHHHc-CCCEec-cCCCHHHHHHHHhcCCCceEEEECCC
Confidence 57899999999999999999999999999988 54332 2333322 221111 11111111 11 36999999997
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0048 Score=53.95 Aligned_cols=73 Identities=12% Similarity=0.090 Sum_probs=52.2
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
..+.+++++|.| .|.||+.+++.|...|.+|++.+|+.++... ..+. .+..+..+-.++.+.+.|+|+.+...
T Consensus 153 ~~l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~-~~~~----g~~~~~~~~l~~~l~~aDvVi~~~p~ 225 (300)
T 2rir_A 153 YTIHGSQVAVLG-LGRTGMTIARTFAALGANVKVGARSSAHLAR-ITEM----GLVPFHTDELKEHVKDIDICINTIPS 225 (300)
T ss_dssp SCSTTSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHT----TCEEEEGGGHHHHSTTCSEEEECCSS
T ss_pred CCCCCCEEEEEc-ccHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHC----CCeEEchhhHHHHhhCCCEEEECCCh
Confidence 357889999999 5999999999999999999999986543221 1111 22333333344566789999998853
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0052 Score=53.53 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=35.1
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
..++||+++|.|+++.+|+.++..|+++|+.|+++.+..
T Consensus 156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t 194 (285)
T 3p2o_A 156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT 194 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence 457999999999999999999999999999999987643
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0025 Score=53.34 Aligned_cols=66 Identities=9% Similarity=0.013 Sum_probs=49.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------cCCCcEEEEccC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHLAC 189 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------~~~iD~Vi~~Ag 189 (263)
.++++|.|+ |.+|+.+++.|.+.|+ |++++++++... .. . ..+.++.+|.+++. +.+.|.||.+.+
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~----~~-~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK----VL-R-SGANFVHGDPTRVSDLEKANVRGARAVIVDLE 80 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHH----HH-H-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHH----HH-h-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence 358999995 9999999999999999 999987644322 11 1 35788999988752 457899998763
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0029 Score=58.29 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=33.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
..+++|+|+||+|.||...+..+...|++|++++++.+
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~ 256 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQ 256 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 36789999999999999999999999999999887544
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0028 Score=52.65 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.+++|.|+| +|.+|..+++.|.+.|++|++++|+.+...+ +. ...+... |. ++.+.++|+||.+..
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~-~~----~~g~~~~--~~-~~~~~~~DvVi~av~ 92 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTAR-LF----PSAAQVT--FQ-EEAVSSPEVIFVAVF 92 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHHH-HS----BTTSEEE--EH-HHHTTSCSEEEECSC
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HH----HcCCcee--cH-HHHHhCCCEEEECCC
Confidence 356899999 8999999999999999999999886443222 11 1123322 32 234567999998874
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.005 Score=53.45 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=56.4
Q ss_pred CCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch-hhhhhhc----------------------CCC
Q 024766 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHF----------------------RNP 164 (263)
Q Consensus 108 ~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~-~~~~~~~----------------------~~~ 164 (263)
.|+...+++|+|+|.| +|-+|...++.|++.|++|++++....... ..+.... ...
T Consensus 5 lpl~~~l~~k~VLVVG-gG~va~rka~~Ll~~Ga~VtViap~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g 83 (274)
T 1kyq_A 5 LQLAHQLKDKRILLIG-GGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAKRFINPNWDPTKN 83 (274)
T ss_dssp EEEEECCTTCEEEEEE-ESHHHHHHHHHHGGGTCEEEEEEEEECTTHHHHHCGGGC-----------CEEECTTCCTTSC
T ss_pred eeEEEEcCCCEEEEEC-CcHHHHHHHHHHHhCCCEEEEEcCCCCcchhHHHHHHHhccccccccchhhcccccccccccC
Confidence 3566678999999999 689999999999999999999986532111 1111111 223
Q ss_pred ce-EEEEccccccccC------CCcEEEEccC
Q 024766 165 RF-ELIRHDVVEPILL------EVDQIYHLAC 189 (263)
Q Consensus 165 ~v-~~~~~Dv~~~~~~------~iD~Vi~~Ag 189 (263)
.+ .++..+..+..+. ++|.||-+.+
T Consensus 84 ~i~~~i~~~~~~~dL~~l~~~~~adlViaat~ 115 (274)
T 1kyq_A 84 EIYEYIRSDFKDEYLDLENENDAWYIIMTCIP 115 (274)
T ss_dssp CCSEEECSSCCGGGGCCSSTTCCEEEEEECCS
T ss_pred CeeEEEcCCCCHHHHhhcccCCCeEEEEEcCC
Confidence 44 6666666665665 7888887774
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0021 Score=57.53 Aligned_cols=71 Identities=21% Similarity=0.127 Sum_probs=48.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc----cccccccCCCcEEEEccCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH----DVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~----Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
.+.+|+|+|+ |.||...+..+...|++|++++++.++.+ .+.+ ++... ++.. |..+....++|+||.++|.
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~-~~~~-lGa~~--v~~~~~~~~~~~~~~~~~D~vid~~g~ 253 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKRE-DAMK-MGADH--YIATLEEGDWGEKYFDTFDLIVVCASS 253 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHH-HHHH-HTCSE--EEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHH-HHHH-cCCCE--EEcCcCchHHHHHhhcCCCEEEECCCC
Confidence 5789999999 99999999888889999999998766543 2222 23221 2222 2222223579999999974
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0056 Score=53.33 Aligned_cols=71 Identities=18% Similarity=0.107 Sum_probs=51.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.+.+++++|.| .|.||+.+++.|...|.+|++.+|+.+.... ..+ . .+..+..+-.++.+.+.|+|+.+..
T Consensus 152 ~l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~-~~~-~---g~~~~~~~~l~~~l~~aDvVi~~~p 222 (293)
T 3d4o_A 152 TIHGANVAVLG-LGRVGMSVARKFAALGAKVKVGARESDLLAR-IAE-M---GMEPFHISKAAQELRDVDVCINTIP 222 (293)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHH-T---TSEEEEGGGHHHHTTTCSEEEECCS
T ss_pred CCCCCEEEEEe-eCHHHHHHHHHHHhCCCEEEEEECCHHHHHH-HHH-C---CCeecChhhHHHHhcCCCEEEECCC
Confidence 57889999999 6999999999999999999999986543221 111 1 2233333334455678999999874
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0037 Score=54.07 Aligned_cols=72 Identities=19% Similarity=0.275 Sum_probs=49.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
.+++++++|.| +|.+|+.++..|++.|.+|++.+|+.++..+ +.+.+ .+.. .+-..+.+.+.|+||++....
T Consensus 126 ~~~~~~v~iiG-aG~~g~aia~~L~~~g~~V~v~~r~~~~~~~-l~~~~---g~~~--~~~~~~~~~~aDiVi~atp~~ 197 (275)
T 2hk9_A 126 EVKEKSILVLG-AGGASRAVIYALVKEGAKVFLWNRTKEKAIK-LAQKF---PLEV--VNSPEEVIDKVQVIVNTTSVG 197 (275)
T ss_dssp TGGGSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSHHHHHH-HTTTS---CEEE--CSCGGGTGGGCSEEEECSSTT
T ss_pred CcCCCEEEEEC-chHHHHHHHHHHHHcCCEEEEEECCHHHHHH-HHHHc---CCee--ehhHHhhhcCCCEEEEeCCCC
Confidence 45788999999 5999999999999999999888876443222 22111 2322 212233456799999998654
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0021 Score=50.96 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=44.2
Q ss_pred ChHHHHHHHHHHhCCCeEEEEecCCccchh--hhhhhc--CCCceEEEEcccccc--------------ccCCCcEEEEc
Q 024766 126 GFVGSHLVDKLIDRGDEVIVIDNFFTGRKD--NLVHHF--RNPRFELIRHDVVEP--------------ILLEVDQIYHL 187 (263)
Q Consensus 126 G~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~--~~~~~~--~~~~v~~~~~Dv~~~--------------~~~~iD~Vi~~ 187 (263)
|.++.+.++.|++.|++|++..|....... ...+.. .+.++..+.+|+.++ .+++ |++|||
T Consensus 26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~-dVLVnn 104 (157)
T 3gxh_A 26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGK-DVLVHC 104 (157)
T ss_dssp BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTS-CEEEEC
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCC-CEEEEC
Confidence 578899999999999999988776443321 111111 245667777888765 1345 999999
Q ss_pred cCC
Q 024766 188 ACP 190 (263)
Q Consensus 188 Ag~ 190 (263)
||.
T Consensus 105 Agg 107 (157)
T 3gxh_A 105 LAN 107 (157)
T ss_dssp SBS
T ss_pred CCC
Confidence 974
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0046 Score=55.72 Aligned_cols=93 Identities=17% Similarity=0.277 Sum_probs=56.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhh---hhcCCCc-eEEEEccccccccCCCcEEEEccCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLV---HHFRNPR-FELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~---~~~~~~~-v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
.+|.|.||+|.||+.+++.|.+... +++.+...... ..... ..+.... .++...+ +..+.++|+||.|++..
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~-g~~~~~~~~~~~~~v~~dl~~~~--~~~~~~vDvVf~atp~~ 93 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKA-GQSMESVFPHLRAQKLPTLVSVK--DADFSTVDAVFCCLPHG 93 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTT-TSCHHHHCGGGTTSCCCCCBCGG--GCCGGGCSEEEECCCTT
T ss_pred cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhc-CCCHHHhCchhcCcccccceecc--hhHhcCCCEEEEcCCch
Confidence 5899999999999999999998865 77776543221 11111 1111110 0111112 33445799999998632
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCc
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~ 231 (263)
. +...+..+ +.|+++|-.|+.
T Consensus 94 ~------------------s~~~a~~~-~aG~~VId~sa~ 114 (359)
T 1xyg_A 94 T------------------TQEIIKEL-PTALKIVDLSAD 114 (359)
T ss_dssp T------------------HHHHHHTS-CTTCEEEECSST
T ss_pred h------------------HHHHHHHH-hCCCEEEECCcc
Confidence 1 12345556 667788888875
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.004 Score=55.72 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=31.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF 149 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~ 149 (263)
.+++++|+|.| .|++|.++++.|+..|. ++.++|+.
T Consensus 31 kL~~~~VlIvG-aGGlGs~va~~La~aGVg~ItlvD~D 67 (340)
T 3rui_A 31 IIKNTKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNG 67 (340)
T ss_dssp HHHTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHhCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 46788999999 69999999999999998 78888764
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0016 Score=57.34 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=47.7
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccc---cccccCCCcEEEEccC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---VEPILLEVDQIYHLAC 189 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv---~~~~~~~iD~Vi~~Ag 189 (263)
..+.+|+|+||+|.||...+..+...|++|+++++.. ..+.+.+ ++... .++.+- ..+...++|++|.++|
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~--~~~~~~~-lGa~~--~i~~~~~~~~~~~~~g~D~v~d~~g 224 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR--NHAFLKA-LGAEQ--CINYHEEDFLLAISTPVDAVIDLVG 224 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH--HHHHHHH-HTCSE--EEETTTSCHHHHCCSCEEEEEESSC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc--hHHHHHH-cCCCE--EEeCCCcchhhhhccCCCEEEECCC
Confidence 3678999999999999999999989999999887432 2222222 23222 222211 2223467999999987
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0061 Score=61.97 Aligned_cols=107 Identities=10% Similarity=0.139 Sum_probs=70.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc------------------hhhhhhhc----CCCceEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR------------------KDNLVHHF----RNPRFELI 169 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~------------------~~~~~~~~----~~~~v~~~ 169 (263)
.++..+|+|.| .|++|.++++.|+..|. ++.++|...-.. .+.+.+.+ ....+..+
T Consensus 24 rL~~s~VlIvG-~GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG~~Ka~a~~~~L~~lNP~v~v~~~ 102 (1015)
T 3cmm_A 24 KMQTSNVLILG-LKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVL 102 (1015)
T ss_dssp HHTTCEEEEEC-CSHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHTTSCTTSCEEEC
T ss_pred HHhcCEEEEEC-CChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcChHHHHHHHHHHHHHCCCCeEEEe
Confidence 45778999999 69999999999999998 888887541110 11111111 23356666
Q ss_pred EccccccccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC
Q 024766 170 RHDVVEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (263)
Q Consensus 170 ~~Dv~~~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~ 236 (263)
..++....+.+.|+||.+.. .+ ...-..+.++|.+.++.+|..++.+.+|.
T Consensus 103 ~~~l~~~~l~~~DvVv~~~d--------~~--------~~~r~~ln~~c~~~~iplI~~~~~G~~G~ 153 (1015)
T 3cmm_A 103 DSLDDVTQLSQFQVVVATDT--------VS--------LEDKVKINEFCHSSGIRFISSETRGLFGN 153 (1015)
T ss_dssp CCCCCSTTGGGCSEEEECTT--------SC--------HHHHHHHHHHHHHHTCEEEEEEEETTEEE
T ss_pred cCCCCHHHHhcCCEEEEcCC--------CC--------HHHHHHHHHHHHHcCCCEEEEEecccEEE
Confidence 66666666778999997651 02 22223456677778888888887766663
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0088 Score=52.10 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=35.0
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
..++||+++|.|+++.+|+.++..|++.|+.|+++.+..
T Consensus 157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T 195 (286)
T 4a5o_A 157 ADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT 195 (286)
T ss_dssp CCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC
Confidence 457999999999999999999999999999999987643
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.007 Score=53.68 Aligned_cols=82 Identities=17% Similarity=0.102 Sum_probs=53.0
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCc-eEEEE-c--cccccccCCCcEEEE
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPR-FELIR-H--DVVEPILLEVDQIYH 186 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~-v~~~~-~--Dv~~~~~~~iD~Vi~ 186 (263)
+..+.+++++|.|++..+|+.+++.|+..|++|++++|+.....+.......... ...+. . +-..+.+.+.|+||.
T Consensus 172 g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIs 251 (320)
T 1edz_A 172 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVIT 251 (320)
T ss_dssp TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEE
T ss_pred CCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEE
Confidence 4468899999999888899999999999999999998763332222222111111 11111 1 222344567899999
Q ss_pred ccCCCC
Q 024766 187 LACPAS 192 (263)
Q Consensus 187 ~Ag~~~ 192 (263)
+.|...
T Consensus 252 Atg~p~ 257 (320)
T 1edz_A 252 GVPSEN 257 (320)
T ss_dssp CCCCTT
T ss_pred CCCCCc
Confidence 887543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0013 Score=58.36 Aligned_cols=70 Identities=14% Similarity=0.003 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---ccccc---ccCCCcEEEEcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEP---ILLEVDQIYHLA 188 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~---~~~~iD~Vi~~A 188 (263)
.+++|+|+|+ |+||..++..+...|++|++++++.++.+ .+.+ ++.. ..+.. |+.+. ...++|+||+++
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~-lGa~--~~~d~~~~~~~~~~~~~~~~~d~vid~~ 238 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLE-LAKE-LGAD--LVVNPLKEDAAKFMKEKVGGVHAAVVTA 238 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHH-HHHH-TTCS--EEECTTTSCHHHHHHHHHSSEEEEEESS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHH-CCCC--EEecCCCccHHHHHHHHhCCCCEEEECC
Confidence 5789999999 88999999999999999999988654432 2222 2221 11211 11111 114799999999
Q ss_pred C
Q 024766 189 C 189 (263)
Q Consensus 189 g 189 (263)
|
T Consensus 239 g 239 (339)
T 1rjw_A 239 V 239 (339)
T ss_dssp C
T ss_pred C
Confidence 7
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0051 Score=58.32 Aligned_cols=105 Identities=10% Similarity=0.115 Sum_probs=67.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc------------------hhh----hhhhcCCCceEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR------------------KDN----LVHHFRNPRFELIR 170 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~------------------~~~----~~~~~~~~~v~~~~ 170 (263)
++..+|+|.| .|++|.++++.|+..|. ++.++|...-.. .+. +.+.-...++..+.
T Consensus 30 L~~~~VlvvG-~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~ 108 (531)
T 1tt5_A 30 LESAHVCLIN-ATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVE 108 (531)
T ss_dssp HHHCEEEEEC-CSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEES
T ss_pred HhcCeEEEEC-cCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeC
Confidence 4567999999 69999999999999998 888887542110 011 11111223455555
Q ss_pred ccccc------cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC
Q 024766 171 HDVVE------PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD 236 (263)
Q Consensus 171 ~Dv~~------~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~ 236 (263)
.++.+ ..+.+.|+||.+. ++.. .-..+.+.|.+.++.+|..++.+.+|.
T Consensus 109 ~~~~~~~~~~~~~~~~~DvVi~~~---------d~~~--------~r~~ln~~c~~~~iplI~~~~~G~~G~ 163 (531)
T 1tt5_A 109 ESPENLLDNDPSFFCRFTVVVATQ---------LPES--------TSLRLADVLWNSQIPLLICRTYGLVGY 163 (531)
T ss_dssp SCHHHHHHSCGGGGGGCSEEEEES---------CCHH--------HHHHHHHHHHHTTCCEEEEEEETTEEE
T ss_pred CCcchhhhhhHHHhcCCCEEEEeC---------CCHH--------HHHHHHHHHHHcCCCEEEEEecCCeEE
Confidence 54432 3456799999886 2222 223455677788888998888777663
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.008 Score=58.09 Aligned_cols=104 Identities=13% Similarity=0.180 Sum_probs=66.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch------------------hh----hhhhcCCCceEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK------------------DN----LVHHFRNPRFELIR 170 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~------------------~~----~~~~~~~~~v~~~~ 170 (263)
++..+|+|.| .|++|.++++.|+..|. ++.++|...-... +. +.++-...++..+.
T Consensus 15 L~~s~VlVVG-aGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~ 93 (640)
T 1y8q_B 15 VAGGRVLVVG-AGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYH 93 (640)
T ss_dssp HHHCEEEEEC-CSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEE
T ss_pred HhcCeEEEEC-cCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEe
Confidence 4567999999 69999999999999998 8888875421110 00 11111234566666
Q ss_pred ccccc-----cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 171 HDVVE-----PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 171 ~Dv~~-----~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
.++.+ ..+.++|+||.+. ++. ..-..+-+.|.+.++.+|..++.+.+|
T Consensus 94 ~~i~~~~~~~~~~~~~DlVvda~---------Dn~--------~aR~~ln~~c~~~~iPlI~~g~~G~~G 146 (640)
T 1y8q_B 94 DSIMNPDYNVEFFRQFILVMNAL---------DNR--------AARNHVNRMCLAADVPLIESGTAGYLG 146 (640)
T ss_dssp SCTTSTTSCHHHHTTCSEEEECC---------SCH--------HHHHHHHHHHHHHTCCEEEEEEETTEE
T ss_pred cccchhhhhHhhhcCCCEEEECC---------CCH--------HHHHHHHHHHHHcCCCEEEEEEecccc
Confidence 66643 3456799999986 122 222345566777777777776665554
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0053 Score=52.61 Aligned_cols=69 Identities=14% Similarity=0.284 Sum_probs=47.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
+++ +++|.| +|+.|++++..|++.|. +|++++|+.++.++... .+.....+-..+...+.|+|||+...
T Consensus 107 ~~~-~vliiG-aGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~------~~~~~~~~~~~~~~~~aDiVInatp~ 176 (253)
T 3u62_A 107 VKE-PVVVVG-AGGAARAVIYALLQMGVKDIWVVNRTIERAKALDF------PVKIFSLDQLDEVVKKAKSLFNTTSV 176 (253)
T ss_dssp CCS-SEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCS------SCEEEEGGGHHHHHHTCSEEEECSST
T ss_pred CCC-eEEEEC-cHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH------HcccCCHHHHHhhhcCCCEEEECCCC
Confidence 467 899999 59999999999999998 89999886543222211 12222333333446689999998743
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0099 Score=51.77 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=34.1
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
..++||+++|.|+++.+|+.++..|+++|+.|+++.+.
T Consensus 157 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~ 194 (285)
T 3l07_A 157 IKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRF 194 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence 35799999999999999999999999999999888654
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0034 Score=56.14 Aligned_cols=72 Identities=18% Similarity=0.124 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcc---ccccccCCCcEEEEccCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHD---VVEPILLEVDQIYHLACP 190 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D---v~~~~~~~iD~Vi~~Ag~ 190 (263)
.+.+|+|+|+ |.||...+..+...|++|++++++.++.+. +.+.++... ++..+ ...+...++|+||.++|.
T Consensus 180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~-~~~~lGa~~--vi~~~~~~~~~~~~~g~D~vid~~g~ 254 (357)
T 2cf5_A 180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREE-ALQDLGADD--YVIGSDQAKMSELADSLDYVIDTVPV 254 (357)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHH-HHTTSCCSC--EEETTCHHHHHHSTTTEEEEEECCCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHH-HHHHcCCce--eeccccHHHHHHhcCCCCEEEECCCC
Confidence 6789999995 999999998888889999999987554332 221222222 12211 112223469999999973
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0095 Score=52.27 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=34.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
..++||+++|.|+++.+|+.++..|++.|+.|+++.+.
T Consensus 161 i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~ 198 (300)
T 4a26_A 161 IEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSG 198 (300)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 45799999999999999999999999999999998764
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.024 Score=50.10 Aligned_cols=72 Identities=14% Similarity=-0.030 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCChHHHH-HHHHHHhCCCeEEEEecCCcc-chhhhhhhcCCCceEEEEcccccccc-CCCcEEEEccCCC
Q 024766 115 RRLRIVVTGGAGFVGSH-LVDKLIDRGDEVIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEPIL-LEVDQIYHLACPA 191 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~-l~~~Ll~~G~~V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~Dv~~~~~-~~iD~Vi~~Ag~~ 191 (263)
.+|+|.+.| -|++|.. +++.|.++|++|.+.|+.... ..+.+. ...+.+..+.-.+... .++|.||...|+.
T Consensus 3 ~~~~i~~iG-iGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~----~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~ 77 (326)
T 3eag_A 3 AMKHIHIIG-IGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLE----ALGIDVYEGFDAAQLDEFKADVYVIGNVAK 77 (326)
T ss_dssp CCCEEEEES-CCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHH----HTTCEEEESCCGGGGGSCCCSEEEECTTCC
T ss_pred CCcEEEEEE-ECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHH----hCCCEEECCCCHHHcCCCCCCEEEECCCcC
Confidence 467899999 5888885 999999999999999986432 112222 2245555543333333 4799999998763
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0077 Score=52.20 Aligned_cols=93 Identities=19% Similarity=0.321 Sum_probs=53.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhC-CCeEEEE-ecCCccc-hhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDR-GDEVIVI-DNFFTGR-KDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l-~r~~~~~-~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~ 192 (263)
+.+|.|+|++|.+|+.+++.+.+. +.+++.+ ++..... ...+.+..+... .+...+-.+..+.++|+||.++.
T Consensus 7 mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~-gv~v~~dl~~ll~~~DVVIDfT~--- 82 (272)
T 4f3y_A 7 SMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQT-GVALTDDIERVCAEADYLIDFTL--- 82 (272)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCC-SCBCBCCHHHHHHHCSEEEECSC---
T ss_pred ccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCC-CceecCCHHHHhcCCCEEEEcCC---
Confidence 468999999999999999999876 4466664 5543221 111122211111 11112223334457899999872
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Q 024766 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLL 227 (263)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~ 227 (263)
++ .+...++.|.++|+++|.
T Consensus 83 -------p~--------a~~~~~~~al~~G~~vVi 102 (272)
T 4f3y_A 83 -------PE--------GTLVHLDAALRHDVKLVI 102 (272)
T ss_dssp -------HH--------HHHHHHHHHHHHTCEEEE
T ss_pred -------HH--------HHHHHHHHHHHcCCCEEE
Confidence 21 233455666677776664
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.01 Score=51.37 Aligned_cols=37 Identities=19% Similarity=0.177 Sum_probs=34.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
++||+++|.|+++.+|+.++..|++.|+.|+++.+..
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t 184 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT 184 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 7899999999999999999999999999999987643
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0079 Score=53.43 Aligned_cols=70 Identities=21% Similarity=0.190 Sum_probs=48.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
..+.+|+|+|+ |.||...+..+...|++|++++++.++.+ .+.+ ++...+. .|. +....++|+||.++|.
T Consensus 175 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~-~~~~-lGa~~v~---~~~-~~~~~~~D~vid~~g~ 244 (348)
T 3two_A 175 TKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQ-DALS-MGVKHFY---TDP-KQCKEELDFIISTIPT 244 (348)
T ss_dssp CTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHH-HHHH-TTCSEEE---SSG-GGCCSCEEEEEECCCS
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHh-cCCCeec---CCH-HHHhcCCCEEEECCCc
Confidence 35789999996 99999999888889999999988766543 2222 2332222 222 2222379999999873
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.007 Score=54.74 Aligned_cols=92 Identities=16% Similarity=0.100 Sum_probs=51.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHh-CCC---eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLID-RGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~-~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
|++|.|.||+|.+|+.+++++++ +++ +++.+..+.... .+. .+....+.+...+-. ..+.++|+||-|.|.
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~--~v~-~~~g~~i~~~~~~~~-~~~~~~DvVf~a~g~- 75 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ--AAP-SFGGTTGTLQDAFDL-EALKALDIIVTCQGG- 75 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS--BCC-GGGTCCCBCEETTCH-HHHHTCSEEEECSCH-
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCC--Ccc-ccCCCceEEEecCCh-HHhcCCCEEEECCCc-
Confidence 35899999999999999995444 443 455554432211 111 112223333333211 124689999999861
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEc
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTS 229 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vS 229 (263)
..+......+.+.|++.+.|+
T Consensus 76 -----------------~~s~~~a~~~~~~G~k~vVID 96 (367)
T 1t4b_A 76 -----------------DYTNEIYPKLRESGWQGYWID 96 (367)
T ss_dssp -----------------HHHHHHHHHHHHTTCCCEEEE
T ss_pred -----------------hhHHHHHHHHHHCCCCEEEEc
Confidence 123345666677786434444
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.044 Score=49.04 Aligned_cols=92 Identities=24% Similarity=0.179 Sum_probs=57.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC---eEEEEec-CCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDN-FFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~---~V~~l~r-~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~ 192 (263)
.+|.|.||||++|.+|++.|.++.+ ++..+.. +..... +. +... +....|..+..+.++|+||-|++..
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~--~~--~~~~--~~~~~~~~~~~~~~~Dvvf~a~~~~- 74 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRK--LA--FRGQ--EIEVEDAETADPSGLDIALFSAGSA- 74 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCE--EE--ETTE--EEEEEETTTSCCTTCSEEEECSCHH-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCc--ee--ecCC--ceEEEeCCHHHhccCCEEEECCChH-
Confidence 4799999999999999998888743 4555442 111111 11 2222 2333333344567899999998521
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
-+......+.+.|+++|-.|+..
T Consensus 75 -----------------~s~~~a~~~~~~G~~vID~Sa~~ 97 (344)
T 3tz6_A 75 -----------------MSKVQAPRFAAAGVTVIDNSSAW 97 (344)
T ss_dssp -----------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred -----------------HHHHHHHHHHhCCCEEEECCCcc
Confidence 12345556667788888888853
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.045 Score=51.13 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=32.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhC-CC-eEEEEecCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDR-GD-EVIVIDNFFT 151 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~-G~-~V~~l~r~~~ 151 (263)
..++|.|.| .|.+|..++..|++. |+ +|++++++++
T Consensus 17 ~~mkIaVIG-lG~mG~~lA~~la~~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLG-MGYVGIPAAVLFADAPCFEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEEC-CSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence 446899998 799999999999999 99 9999999877
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.021 Score=52.52 Aligned_cols=36 Identities=39% Similarity=0.499 Sum_probs=31.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~ 153 (263)
++|.|.| +|.+|..++..|++.|++|++++++++..
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~~~~ 36 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSSTKI 36 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 3788998 79999999999999999999999865543
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.012 Score=52.52 Aligned_cols=38 Identities=11% Similarity=0.014 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~ 152 (263)
.+.+|+|+||+|.+|...+..+...|++|+++.+..+.
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~ 204 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPD 204 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSC
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccc
Confidence 57899999999999999888777789998888765443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0047 Score=55.56 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc---cccccccCCCcEEEEccCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
.+.+|+|+|+ |.||...+..+...|++|++++++.++.+ .+.+ ++... ++.. |..+....++|+||.++|.
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~-~a~~-lGa~~--vi~~~~~~~~~~~~~g~Dvvid~~g~ 267 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKRE-AAKA-LGADE--VVNSRNADEMAAHLKSFDFILNTVAA 267 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHH-HTCSE--EEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHH-cCCcE--EeccccHHHHHHhhcCCCEEEECCCC
Confidence 5789999997 89999999888889999999988655433 2222 22221 2221 2222223579999999974
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0016 Score=58.07 Aligned_cols=70 Identities=21% Similarity=0.207 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEc---cccccc---c--CCCcEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEPI---L--LEVDQIY 185 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~~---~--~~iD~Vi 185 (263)
.+++|+|+|+ |.||...+..+...|+ +|++++++.++. +.+.+ ++... .+.. |+.+.. . .++|+||
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~-~~~~~-~Ga~~--~~~~~~~~~~~~v~~~~~g~g~D~vi 241 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRR-ELAKK-VGADY--VINPFEEDVVKEVMDITDGNGVDVFL 241 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHH-HHHHH-HTCSE--EECTTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHH-hCCCE--EECCCCcCHHHHHHHHcCCCCCCEEE
Confidence 6789999999 9999999999988999 999998864432 22222 22211 2221 222211 1 2599999
Q ss_pred EccC
Q 024766 186 HLAC 189 (263)
Q Consensus 186 ~~Ag 189 (263)
+++|
T Consensus 242 d~~g 245 (348)
T 2d8a_A 242 EFSG 245 (348)
T ss_dssp ECSC
T ss_pred ECCC
Confidence 9996
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.035 Score=47.27 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=27.2
Q ss_pred EEEEEcCCChHHHHHHHHHHhC-CCeEEEEecC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNF 149 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~ 149 (263)
+|.|.|++|.+|+.+++.+.+. +.+++.+...
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~ 34 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDA 34 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECT
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEcc
Confidence 7999999999999999999876 8888766543
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.017 Score=53.72 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=59.7
Q ss_pred CCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEc
Q 024766 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 108 ~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
.|...++++|+|+|.| .|-+|...++.|++.|++|++++..... .+........+.++..+..+..+.+.|.||-+
T Consensus 4 ~P~~~~l~~~~vlVvG-gG~va~~k~~~L~~~ga~V~vi~~~~~~---~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~a 79 (457)
T 1pjq_A 4 LPIFCQLRDRDCLIVG-GGDVAERKARLLLEAGARLTVNALTFIP---QFTVWANEGMLTLVEGPFDETLLDSCWLAIAA 79 (457)
T ss_dssp EEEEECCBTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSCCH---HHHHHHTTTSCEEEESSCCGGGGTTCSEEEEC
T ss_pred eeeEEECCCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEcCCCCH---HHHHHHhcCCEEEEECCCCccccCCccEEEEc
Confidence 3556678899999999 6899999999999999999999864332 23333234567788877777777889998887
Q ss_pred cC
Q 024766 188 AC 189 (263)
Q Consensus 188 Ag 189 (263)
.+
T Consensus 80 t~ 81 (457)
T 1pjq_A 80 TD 81 (457)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.019 Score=50.89 Aligned_cols=69 Identities=16% Similarity=0.131 Sum_probs=51.4
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
...+.||++.|.| .|.||+.+++.|...|.+|++.+|+....... ......+-.++.+.+.|+|+.+..
T Consensus 132 ~~~l~gktvGIiG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~---------~~~~~~~~l~ell~~aDvV~l~lP 200 (324)
T 3evt_A 132 TSTLTGQQLLIYG-TGQIGQSLAAKASALGMHVIGVNTTGHPADHF---------HETVAFTATADALATANFIVNALP 200 (324)
T ss_dssp CCCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSCCCCTTC---------SEEEEGGGCHHHHHHCSEEEECCC
T ss_pred CccccCCeEEEEC-cCHHHHHHHHHHHhCCCEEEEECCCcchhHhH---------hhccccCCHHHHHhhCCEEEEcCC
Confidence 4568899999999 89999999999999999999999875432110 112334444556777999987763
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0065 Score=53.40 Aligned_cols=70 Identities=20% Similarity=0.127 Sum_probs=44.5
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCce-EEEEcc--ccccc-cCCCcEEEEccC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF-ELIRHD--VVEPI-LLEVDQIYHLAC 189 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v-~~~~~D--v~~~~-~~~iD~Vi~~Ag 189 (263)
+|+|+||+|.||...+..+...|++|++++++.++.+ .+.+ ++...+ +.-..| ..... -.++|++|+++|
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~-~~~~-lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g 225 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD-YLRV-LGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG 225 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHH-HHHH-TTCSEEEECC---------CCSCCEEEEEECST
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHH-cCCcEEEecCCcHHHHHHHhcCCcccEEEECCc
Confidence 7999999999999999988889999999998755433 2222 222211 111111 11111 135899999997
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.011 Score=54.22 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=51.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------cCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------~~~iD~Vi~~A 188 (263)
.++|+|.| .|-+|+.+++.|.+.|++|++++++++..... . ...+.++.+|.+++. +.+.|+||-+.
T Consensus 4 ~~~viIiG-~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~-~----~~g~~vi~GDat~~~~L~~agi~~A~~viv~~ 76 (413)
T 3l9w_A 4 GMRVIIAG-FGRFGQITGRLLLSSGVKMVVLDHDPDHIETL-R----KFGMKVFYGDATRMDLLESAGAAKAEVLINAI 76 (413)
T ss_dssp CCSEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCHHHHHHH-H----HTTCCCEESCTTCHHHHHHTTTTTCSEEEECC
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHHH-H----hCCCeEEEcCCCCHHHHHhcCCCccCEEEECC
Confidence 34799999 59999999999999999999999865543222 1 234668889988863 45689998877
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0083 Score=51.79 Aligned_cols=65 Identities=20% Similarity=0.284 Sum_probs=46.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
+++|.|.|++|.+|..+++.|++.|++|++.+|+.+..+. +.+ .+ +.. .| ..+...+.|+||-+.
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~-~~~-~g---~~~--~~-~~~~~~~aDvVi~av 75 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDR-LQG-MG---IPL--TD-GDGWIDEADVVVLAL 75 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHH-HHH-TT---CCC--CC-SSGGGGTCSEEEECS
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHH-HHh-cC---CCc--CC-HHHHhcCCCEEEEcC
Confidence 3689999988999999999999999999998886543322 222 11 111 12 223456799999887
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.022 Score=50.93 Aligned_cols=66 Identities=20% Similarity=0.185 Sum_probs=49.8
Q ss_pred ccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
.+..+.||++.|.| .|-||+.+++.|...|.+|++.+|...... .+ ...+-.++.+.+.|+|+.+.
T Consensus 165 ~~~~l~gktiGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~----------~~--~~~~sl~ell~~aDvVil~v 230 (340)
T 4dgs_A 165 LGHSPKGKRIGVLG-LGQIGRALASRAEAFGMSVRYWNRSTLSGV----------DW--IAHQSPVDLARDSDVLAVCV 230 (340)
T ss_dssp CCCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCCTTS----------CC--EECSSHHHHHHTCSEEEECC
T ss_pred ccccccCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCccccc----------Cc--eecCCHHHHHhcCCEEEEeC
Confidence 34578999999999 799999999999999999999888654310 11 12233445677899999876
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.006 Score=56.77 Aligned_cols=68 Identities=18% Similarity=0.400 Sum_probs=52.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------cCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------~~~iD~Vi~~A 188 (263)
.|+|+|.| .|-+|..+++.|.++|++|++++.+++.... +.+ ...+..+.+|-+++. ..+.|.+|-+.
T Consensus 3 ~M~iiI~G-~G~vG~~la~~L~~~~~~v~vId~d~~~~~~-~~~---~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t 76 (461)
T 4g65_A 3 AMKIIILG-AGQVGGTLAENLVGENNDITIVDKDGDRLRE-LQD---KYDLRVVNGHASHPDVLHEAGAQDADMLVAVT 76 (461)
T ss_dssp CEEEEEEC-CSHHHHHHHHHTCSTTEEEEEEESCHHHHHH-HHH---HSSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred cCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEECCHHHHHH-HHH---hcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence 46899999 6999999999999999999999976543322 222 235778999988873 45689988765
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.016 Score=50.65 Aligned_cols=67 Identities=12% Similarity=0.123 Sum_probs=44.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.+.+|+|+|+ |.+|...+..+...|++|++++ +.++ .+.+.+. +. +.+.-| .+..-.++|++|.++|
T Consensus 142 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~-~~~~-~~~~~~l-Ga---~~v~~d-~~~v~~g~Dvv~d~~g 208 (315)
T 3goh_A 142 KQREVLIVGF-GAVNNLLTQMLNNAGYVVDLVS-ASLS-QALAAKR-GV---RHLYRE-PSQVTQKYFAIFDAVN 208 (315)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEC-SSCC-HHHHHHH-TE---EEEESS-GGGCCSCEEEEECC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEE-Chhh-HHHHHHc-CC---CEEEcC-HHHhCCCccEEEECCC
Confidence 5789999999 9999999888888899999998 5443 3333332 22 222124 3333346899999886
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0025 Score=56.55 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFT 151 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~ 151 (263)
.+.+|+|+|+ |.||...+..+...|+ +|++++++.+
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~ 200 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPY 200 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH
Confidence 6789999999 9999999998888999 9999987644
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=96.02 E-value=0.013 Score=52.87 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=33.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.+++|+|+|.| .|-+|..+++.|.+.|++|++.+++.+
T Consensus 170 ~L~GktV~V~G-~G~VG~~~A~~L~~~GakVvv~D~~~~ 207 (364)
T 1leh_A 170 SLEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKA 207 (364)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCCcCEEEEEC-chHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 57899999999 599999999999999999998887544
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0087 Score=57.41 Aligned_cols=36 Identities=25% Similarity=0.397 Sum_probs=31.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF 149 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~ 149 (263)
.++.++|+|.| .|++|.++++.|+..|. ++.++|..
T Consensus 323 kL~~arVLIVG-aGGLGs~vA~~La~aGVG~ItLvD~D 359 (615)
T 4gsl_A 323 IIKNTKVLLLG-AGTLGCYVSRALIAWGVRKITFVDNG 359 (615)
T ss_dssp HHHTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHhCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 35788999999 69999999999999998 88888765
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0065 Score=53.48 Aligned_cols=68 Identities=22% Similarity=0.248 Sum_probs=45.5
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc-cc-c---ccc-cCCCcEEEEccC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH-DV-V---EPI-LLEVDQIYHLAC 189 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~-Dv-~---~~~-~~~iD~Vi~~Ag 189 (263)
+|+|+||+|.||...+..+...|++|++++++.++.+ .+.+ ++... .++. |. . ... -.++|++|+++|
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~-~~~~-lGa~~--v~~~~~~~~~~~~~~~~~~~d~vid~~g 226 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAAD-YLKQ-LGASE--VISREDVYDGTLKALSKQQWQGAVDPVG 226 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHH-HHHH-HTCSE--EEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHH-cCCcE--EEECCCchHHHHHHhhcCCccEEEECCc
Confidence 7999999999999999988889999999998755432 2322 23221 2221 11 0 111 125899999996
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.012 Score=50.21 Aligned_cols=69 Identities=20% Similarity=0.129 Sum_probs=47.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
.+++ +++|.| +|.+|+.++..|.+.|.+|.+.+|+.++..+ +.+.++. . ..|+ ++. .+.|+||++....
T Consensus 114 ~l~~-~v~iiG-~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~-l~~~~~~---~--~~~~-~~~-~~~Divi~~tp~~ 182 (263)
T 2d5c_A 114 PLKG-PALVLG-AGGAGRAVAFALREAGLEVWVWNRTPQRALA-LAEEFGL---R--AVPL-EKA-REARLLVNATRVG 182 (263)
T ss_dssp CCCS-CEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHH-HHHHHTC---E--ECCG-GGG-GGCSEEEECSSTT
T ss_pred CCCC-eEEEEC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHHhcc---c--hhhH-hhc-cCCCEEEEccCCC
Confidence 4577 899999 5889999999999999999888886543332 2222221 1 1233 334 6799999998654
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.056 Score=48.48 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=50.3
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
..+.||++.|.| .|.||+.+++.|...|.+|++.+|+...... .... .+. ..+-.++.+.+.|+|+.+..
T Consensus 160 ~~l~gktvGIIG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-~~~~----g~~--~~~~l~ell~~aDvV~l~~P 229 (351)
T 3jtm_A 160 YDLEGKTIGTVG-AGRIGKLLLQRLKPFGCNLLYHDRLQMAPEL-EKET----GAK--FVEDLNEMLPKCDVIVINMP 229 (351)
T ss_dssp CCSTTCEEEEEC-CSHHHHHHHHHHGGGCCEEEEECSSCCCHHH-HHHH----CCE--ECSCHHHHGGGCSEEEECSC
T ss_pred ccccCCEEeEEE-eCHHHHHHHHHHHHCCCEEEEeCCCccCHHH-HHhC----CCe--EcCCHHHHHhcCCEEEECCC
Confidence 457899999999 8999999999999999999999876433221 1111 111 22344566778999988774
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0095 Score=53.51 Aligned_cols=71 Identities=11% Similarity=0.007 Sum_probs=46.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEE---cccccc----ccCCCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIR---HDVVEP----ILLEVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~---~Dv~~~----~~~~iD~Vi~ 186 (263)
..+.+|+|+||+|.+|...+..+...|++|+++. +. .+.+.+. .++.. .+++ .|+.+. .-.++|++|.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~-~~~~~~~-~lGa~--~vi~~~~~~~~~~v~~~t~g~~d~v~d 237 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SP-HNFDLAK-SRGAE--EVFDYRAPNLAQTIRTYTKNNLRYALD 237 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CG-GGHHHHH-HTTCS--EEEETTSTTHHHHHHHHTTTCCCEEEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CH-HHHHHHH-HcCCc--EEEECCCchHHHHHHHHccCCccEEEE
Confidence 4678999999999999999988888999998886 32 2333332 22322 1222 222221 1135999999
Q ss_pred ccC
Q 024766 187 LAC 189 (263)
Q Consensus 187 ~Ag 189 (263)
++|
T Consensus 238 ~~g 240 (371)
T 3gqv_A 238 CIT 240 (371)
T ss_dssp SSC
T ss_pred CCC
Confidence 996
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.018 Score=51.84 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=57.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcC----------CCceEEEEccccccccCCCcEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR----------NPRFELIRHDVVEPILLEVDQI 184 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~----------~~~v~~~~~Dv~~~~~~~iD~V 184 (263)
+.+|.|.||||++|.+|++.|.+... ++..+..+.. ....+.+... .....+...| ...+.++|+|
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~s-aGk~~~~~~p~~~~~~~~~~~~~~~v~~~~--~~~~~~vDvv 83 (359)
T 4dpl_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGS-VGKPYGEVVRWQTVGQVPKEIADMEIKPTD--PKLMDDVDII 83 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTT-TTSBHHHHCCCCSSSCCCHHHHTCBCEECC--GGGCTTCCEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchh-cCCChhHhcccccccccccccccceEEeCC--HHHhcCCCEE
Confidence 35899999999999999998877654 6665543221 1111221110 0012222222 2335689999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
|-|.+... ...+...+.+.|+++|-.|+..
T Consensus 84 f~a~p~~~------------------s~~~a~~~~~~G~~vIDlSa~~ 113 (359)
T 4dpl_A 84 FSPLPQGA------------------AGPVEEQFAKEGFPVISNSPDH 113 (359)
T ss_dssp EECCCTTT------------------HHHHHHHHHHTTCEEEECSSTT
T ss_pred EECCChHH------------------HHHHHHHHHHCCCEEEEcCCCc
Confidence 99986321 1234555667788999998873
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.018 Score=51.84 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=57.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcC----------CCceEEEEccccccccCCCcEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR----------NPRFELIRHDVVEPILLEVDQI 184 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~----------~~~v~~~~~Dv~~~~~~~iD~V 184 (263)
+.+|.|.||||++|.+|++.|.+... ++..+..+.. ....+.+... .....+...| ...+.++|+|
T Consensus 7 ~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~s-aGk~~~~~~p~~~~~~~~~~~~~~~v~~~~--~~~~~~vDvv 83 (359)
T 4dpk_A 7 TLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGS-VGKPYGEVVRWQTVGQVPKEIADMEIKPTD--PKLMDDVDII 83 (359)
T ss_dssp CEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTT-TTSBHHHHCCCCSSSCCCHHHHTCBCEECC--GGGCTTCCEE
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchh-cCCChhHhcccccccccccccccceEEeCC--HHHhcCCCEE
Confidence 35899999999999999998877654 6665543221 1111221110 0012222222 2335689999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
|-|.+... ...+...+.+.|+++|-.|+..
T Consensus 84 f~a~p~~~------------------s~~~a~~~~~~G~~vIDlSa~~ 113 (359)
T 4dpk_A 84 FSPLPQGA------------------AGPVEEQFAKEGFPVISNSPDH 113 (359)
T ss_dssp EECCCTTT------------------HHHHHHHHHHTTCEEEECSSTT
T ss_pred EECCChHH------------------HHHHHHHHHHCCCEEEEcCCCc
Confidence 99986321 1234555667788999998873
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.027 Score=49.11 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=36.3
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~ 153 (263)
..+.|++++|.|+++-+|+.++..|+..|+.|+++.+.....
T Consensus 155 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t~~L 196 (288)
T 1b0a_A 155 IDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNL 196 (288)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCH
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCchhH
Confidence 357899999999988999999999999999999987655433
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.89 E-value=0.026 Score=52.34 Aligned_cols=36 Identities=31% Similarity=0.355 Sum_probs=31.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~ 153 (263)
++|.|.| +|.+|..++..|++.|++|++++++.+..
T Consensus 3 mkI~VIG-~G~vG~~lA~~La~~G~~V~~~D~~~~~v 38 (450)
T 3gg2_A 3 LDIAVVG-IGYVGLVSATCFAELGANVRCIDTDRNKI 38 (450)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CEEEEEC-cCHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 5899998 69999999999999999999999875543
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0049 Score=55.29 Aligned_cols=73 Identities=16% Similarity=0.104 Sum_probs=44.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHh-CCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc----cCCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLID-RGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI----LLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~-~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~----~~~iD~Vi~~Ag 189 (263)
.+.+|+|+||+|.||...+..+.. .|.+|++++++.++. +.+.+ ++...+.-...|+.+.. -.++|+||.|+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~-~~~~~-lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g 248 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQ-EWVKS-LGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTH 248 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHH-HHHHH-TTCSEEECTTSCHHHHHHTTCSCCEEEEEECSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHHHH-cCCCEEEeCCCCHHHHHHHhcCCCceEEEECCC
Confidence 577999999999999987766655 588999998764433 22222 22221110111222211 136999999986
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0063 Score=56.26 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=33.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
..+.+|+|+||+|.||...+..+...|++|++++++.+
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~ 264 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQ 264 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHH
Confidence 35789999999999999999988889999999886543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.016 Score=51.53 Aligned_cols=70 Identities=10% Similarity=-0.039 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEE----cccccc---cc-----CCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIR----HDVVEP---IL-----LEVD 182 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~----~Dv~~~---~~-----~~iD 182 (263)
.+++|+|+|+ |.||...+..+...|++|++++++.++. +.+.+ ++.. ..+. .|..+. .. .++|
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~-~~~~~-lGa~--~~~~~~~~~~~~~~i~~~~~~~~g~g~D 242 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRL-EVAKN-CGAD--VTLVVDPAKEEESSIIERIRSAIGDLPN 242 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHH-TTCS--EEEECCTTTSCHHHHHHHHHHHSSSCCS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHH-HHHHH-hCCC--EEEcCcccccHHHHHHHHhccccCCCCC
Confidence 5779999996 9999999988888999998888764432 22222 2222 2222 222222 11 3699
Q ss_pred EEEEccC
Q 024766 183 QIYHLAC 189 (263)
Q Consensus 183 ~Vi~~Ag 189 (263)
+||+++|
T Consensus 243 ~vid~~g 249 (352)
T 1e3j_A 243 VTIDCSG 249 (352)
T ss_dssp EEEECSC
T ss_pred EEEECCC
Confidence 9999996
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.012 Score=52.56 Aligned_cols=38 Identities=13% Similarity=-0.080 Sum_probs=32.4
Q ss_pred CC-CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc
Q 024766 115 RR-LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 115 ~~-k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~ 152 (263)
.+ .+|+|+||+|.||...+..+...|++|++++++.++
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~ 204 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN 204 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccc
Confidence 46 899999999999999888887889999998876543
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.79 E-value=0.027 Score=49.40 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=34.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
..+.+++++|.|++..+|+.++..|+..|+.|+++.+..
T Consensus 161 i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t 199 (301)
T 1a4i_A 161 VPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT 199 (301)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc
Confidence 357899999999988999999999999999999987543
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.027 Score=50.00 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=49.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
..+.+|++.|.| .|-||+.+++.|...|.+|++.+|+....... ......+-.++.+.+.|+|+.+..
T Consensus 136 ~~l~g~tvGIIG-lG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~---------~~~~~~~~l~ell~~aDvV~l~lP 203 (324)
T 3hg7_A 136 QGLKGRTLLILG-TGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF---------DQVYQLPALNKMLAQADVIVSVLP 203 (324)
T ss_dssp CCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC---------SEEECGGGHHHHHHTCSEEEECCC
T ss_pred cccccceEEEEE-ECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh---------hcccccCCHHHHHhhCCEEEEeCC
Confidence 468899999999 89999999999999999999998865322110 012223344556677888887764
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.015 Score=50.88 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=35.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK 154 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~ 154 (263)
..++++|.|.| .|.+|..++..|++.|++|++.+|+.+...
T Consensus 18 ~~~m~~I~iIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~ 58 (310)
T 3doj_A 18 GSHMMEVGFLG-LGIMGKAMSMNLLKNGFKVTVWNRTLSKCD 58 (310)
T ss_dssp CCCSCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSGGGGH
T ss_pred cccCCEEEEEC-ccHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 44567999998 799999999999999999999998766543
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.027 Score=52.01 Aligned_cols=74 Identities=19% Similarity=0.166 Sum_probs=49.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCcc------------------chhh----hhhhcCCCceEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTG------------------RKDN----LVHHFRNPRFELIR 170 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~------------------~~~~----~~~~~~~~~v~~~~ 170 (263)
++.++|+|.| .|++|.++++.|+..|. ++.++|...-. +.+. +.+.-...+++.+.
T Consensus 38 L~~~~VlvvG-~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~ 116 (434)
T 1tt5_B 38 LDTCKVLVIG-AGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF 116 (434)
T ss_dssp HHTCCEEEEC-SSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEE
T ss_pred hcCCEEEEEC-cCHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEe
Confidence 3678999999 59999999999999998 88888754111 0011 11111234566666
Q ss_pred ccccc---cccCCCcEEEEcc
Q 024766 171 HDVVE---PILLEVDQIYHLA 188 (263)
Q Consensus 171 ~Dv~~---~~~~~iD~Vi~~A 188 (263)
.++.+ ..+.+.|+||.+.
T Consensus 117 ~~i~~~~~~~~~~~DlVi~~~ 137 (434)
T 1tt5_B 117 NKIQDFNDTFYRQFHIIVCGL 137 (434)
T ss_dssp SCGGGBCHHHHTTCSEEEECC
T ss_pred cccchhhHHHhcCCCEEEECC
Confidence 65543 3456799999987
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.025 Score=46.67 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=30.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.+.+++|.|.| .|.+|..++..|++.|++|++.+|+.+
T Consensus 16 ~~~~~~I~iiG-~G~mG~~la~~l~~~g~~V~~~~~~~~ 53 (209)
T 2raf_A 16 YFQGMEITIFG-KGNMGQAIGHNFEIAGHEVTYYGSKDQ 53 (209)
T ss_dssp ----CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred ccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 45677999999 899999999999999999999987643
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.023 Score=50.26 Aligned_cols=67 Identities=15% Similarity=0.234 Sum_probs=48.4
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceE-EEEccccccccCCCcEEEEcc
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFE-LIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~-~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
...+.+|++.|.| .|.||+.+++.|...|.+|++.+|+..... .+. ....+-.++.+.+.|+|+.+.
T Consensus 134 ~~~l~g~tvGIiG-~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~----------~~~~~~~~~~l~ell~~aDiV~l~~ 201 (315)
T 3pp8_A 134 EYTREEFSVGIMG-AGVLGAKVAESLQAWGFPLRCWSRSRKSWP----------GVESYVGREELRAFLNQTRVLINLL 201 (315)
T ss_dssp CCCSTTCCEEEEC-CSHHHHHHHHHHHTTTCCEEEEESSCCCCT----------TCEEEESHHHHHHHHHTCSEEEECC
T ss_pred CCCcCCCEEEEEe-eCHHHHHHHHHHHHCCCEEEEEcCCchhhh----------hhhhhcccCCHHHHHhhCCEEEEec
Confidence 3467899999999 799999999999999999999998754321 111 111133345566788887766
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 263 | ||||
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 1e-55 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 2e-36 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 3e-33 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-32 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 1e-31 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 2e-30 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 7e-29 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 2e-28 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 3e-28 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 6e-27 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 4e-26 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 1e-20 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 2e-20 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 1e-18 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 7e-18 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 5e-16 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 1e-15 | |
| d1eq2a_ | 307 | c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer | 5e-15 | |
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 9e-15 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 1e-14 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 1e-13 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 5e-13 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 1e-12 | |
| d2q46a1 | 252 | c.2.1.2 (A:2-253) Hypothetical protein At5g02240 ( | 7e-12 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 8e-12 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 1e-10 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 6e-10 | |
| d1xgka_ | 350 | c.2.1.2 (A:) Negative transcriptional regulator Nm | 4e-08 | |
| d2a35a1 | 212 | c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse | 1e-07 | |
| d2bkaa1 | 232 | c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H | 4e-06 | |
| d1luaa1 | 191 | c.2.1.7 (A:98-288) Methylene-tetrahydromethanopter | 9e-05 | |
| d1e5qa1 | 182 | c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase | 2e-04 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 0.003 | |
| d1ooea_ | 235 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.003 | |
| d1id1a_ | 153 | c.2.1.9 (A:) Rck domain from putative potassium ch | 0.003 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 179 bits (454), Expect = 1e-55
Identities = 99/137 (72%), Positives = 113/137 (82%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
RI++TGGAGFVGSHL DKL+ G EV V+DNFFTGRK N+ H + FELI HDVVEP+
Sbjct: 3 RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL 62
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237
+EVDQIYHLA PASP +Y YNP+KT+KTN +GTLNMLGLAKRVGA+ LL STSEVYGDP
Sbjct: 63 YIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDP 122
Query: 238 LEHPQKETYWGNVNPIG 254
HPQ E YWG+VNPIG
Sbjct: 123 EVHPQSEDYWGHVNPIG 139
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 130 bits (328), Expect = 2e-36
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 18/156 (11%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN----FFTGRKDNLVH--HFRNPRFELIRH 171
++TG G GS+L + L+++G EV I F T R D++ H NP+F L
Sbjct: 3 VALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYG 62
Query: 172 DVVEPILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-- 222
D+ + L D++Y+L + +P T + MGTL +L + +G
Sbjct: 63 DLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLE 122
Query: 223 --AKFLLTSTSEVYGDPLEHPQKETYWGN-VNPIGE 255
+F STSE+YG E PQKET +P
Sbjct: 123 KKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAV 158
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 122 bits (306), Expect = 3e-33
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 19/149 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIV-IDNF-FTGRKDNLVHHFRNPRFELIRHDVVE 175
+I++TGGAGF+GS +V +I + +V ID + G ++L + R+ D+ +
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61
Query: 176 PILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA----- 223
+ D + HLA + P I+TN++GT +L +A++ +
Sbjct: 62 SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGED 121
Query: 224 -----KFLLTSTSEVYGDPLEHPQKETYW 247
+F ST EVYGD + E
Sbjct: 122 KKNNFRFHHISTDEVYGDLPHPDEVENSV 150
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 120 bits (300), Expect = 1e-32
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 10/140 (7%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVE 175
R++VTGG+G++GSH +L+ G +VI++DN ++ L + + D+
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61
Query: 176 PILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLL 227
L+ +D + H A + P++ NV GTL ++ + K F+
Sbjct: 62 EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121
Query: 228 TSTSEVYGDPLEHPQKETYW 247
+S++ VYGD + P E++
Sbjct: 122 SSSATVYGDQPKIPYVESFP 141
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 117 bits (292), Expect = 1e-31
Identities = 41/145 (28%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHHFRNPRFELIRHDVVEP 176
++++TGG GF+GS+L + +G ++IV DN G DNL FE + D+
Sbjct: 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 61
Query: 177 ILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLA--KRVGAKFLL 227
+ D +HLA + NP + NV GTLN+L +
Sbjct: 62 NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIY 121
Query: 228 TSTSEVYGDPLEHPQKETYWGNVNP 252
+ST++VYGD ++ ET
Sbjct: 122 SSTNKVYGDLEQYKYNETETRYTCV 146
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 113 bits (283), Expect = 2e-30
Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 16/147 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
R+ + G G VGS + +L RGD +V+ +D L + +
Sbjct: 4 RVFIAGHRGMVGSAIRRQLEQRGDVELVLRT-----RDELNLLDSRAVHDFFASE----- 53
Query: 178 LLEVDQIYHLACPASP-VHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKFLLTSTSEVYG 235
+DQ+Y A V P I N+M N++ A + K L +S +Y
Sbjct: 54 --RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYP 111
Query: 236 DPLEHPQKET--YWGNVNPIGELLAAT 260
+ P E+ G + P E A
Sbjct: 112 KLAKQPMAESELLQGTLEPTNEPYAIA 138
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 109 bits (273), Expect = 7e-29
Identities = 46/145 (31%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRG------DEVIVIDNF-FTGRKDNLVHHFRNPRFELIR 170
R++VTGGAGF+GSH V +L+ DEVIV+D+ + G + NL +PR +
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61
Query: 171 HDVVEPILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AK 224
D+ + LL VD I H A + +TNV GT +L A G +
Sbjct: 62 GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121
Query: 225 FLLTSTSEVYGDPLEHPQKETYWGN 249
+ ST++VYG E+
Sbjct: 122 VVHVSTNQVYGSIDSGSWTESSPLE 146
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 108 bits (271), Expect = 2e-28
Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 13/155 (8%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL------VHHFRNPRFELIRH 171
++TG AGF+GS+L++ L+ +V+ +DNF TG + NL V + F+ I+
Sbjct: 18 VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQG 77
Query: 172 DVVEPILL-----EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-AKF 225
D+ VD + H A S +P+ + TN+ G LNML A+ F
Sbjct: 78 DIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSF 137
Query: 226 LLTSTSEVYGDPLEHPQKETYWGN-VNPIGELLAA 259
++S YGD P+ E G ++P
Sbjct: 138 TYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYV 172
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 108 bits (270), Expect = 3e-28
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 18/143 (12%)
Query: 121 VTGGAGFVGSHLVDKLIDRGDEVIVIDN----FFTGRKDNLVHHFR---NPRFELIRHDV 173
+TG G GS+L + L+++G EV I F TGR ++L + + +L D+
Sbjct: 6 ITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDL 65
Query: 174 VEPIL-------LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG---- 222
+ ++ +IY+L + T + +GTL +L K G
Sbjct: 66 TDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINS 125
Query: 223 AKFLLTSTSEVYGDPLEHPQKET 245
KF STSE+YG E PQKET
Sbjct: 126 VKFYQASTSELYGKVQEIPQKET 148
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 104 bits (260), Expect = 6e-27
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH--HFRNPRFELIRHDVVEP 176
++VTGGAG++GSH V +LI+ G + +V DN D++ D+ +
Sbjct: 4 VLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDR 63
Query: 177 ILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLT 228
LE +D + H A + P++ N++GT+ +L L ++ F+ +
Sbjct: 64 KGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFS 123
Query: 229 STSEVYGDPLEHPQKETYW 247
S++ VYGD P
Sbjct: 124 SSATVYGDATRFPNMIPIP 142
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 102 bits (254), Expect = 4e-26
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDE--VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE 175
I+VTGGAGF+GS+ V + + + V V+D + R EL+ D+ +
Sbjct: 4 NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD 63
Query: 176 PILLE-----VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230
L++ D I H A + + +P I TN +GT +L A++ +F ST
Sbjct: 64 AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVST 123
Query: 231 SEVYGD-PLEHPQKETYWGNVNPIGE 255
EVYGD PL G
Sbjct: 124 DEVYGDLPLREDLPGHGEGPGEKFTA 149
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.1 bits (214), Expect = 1e-20
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 15/145 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--------VHHFRNPRFELI 169
+++VTGGAG++GSH V +L++ G +VIDNF + V E
Sbjct: 4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFE 63
Query: 170 RHDVVEPILLEVDQ-------IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG 222
D+++ L+ + H A + P+ + N+ GT+ +L + K G
Sbjct: 64 EMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHG 123
Query: 223 AKFLLTSTSEVYGDPLEHPQKETYW 247
K L+ S+S ++ +
Sbjct: 124 VKNLVFSSSATVYGNPQYLPLDEAH 148
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 86.6 bits (213), Expect = 2e-20
Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 10/140 (7%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF-TGRKDNLVHHFRNPRFELIRHDVVEP 176
+VTG G G++L L+++G V + + + L + D+ +
Sbjct: 2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADA 61
Query: 177 ILL-------EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG--AKFLL 227
+ + ++Y+LA + PV T + +G ++L ++ +F
Sbjct: 62 CSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQ 121
Query: 228 TSTSEVYGDPLEHPQKETYW 247
STSE++G Q E
Sbjct: 122 ASTSEMFGLIQAERQDENTP 141
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 81.9 bits (201), Expect = 1e-18
Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 10/144 (6%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+I +TG GF+ SH+ +L G VI D + +++ F L+ V+E
Sbjct: 17 KISITGAGGFIASHIARRLKHEGHYVIASDWK---KNEHMTEDMFCDEFHLVDLRVMENC 73
Query: 178 LLEVDQIYHLACPASP----VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK---FLLTST 230
L + + H+ A+ + N + N M + NM+ A+ G K + ++
Sbjct: 74 LKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSAC 133
Query: 231 SEVYGDPLEHPQKETYWGNVNPIG 254
LE + P
Sbjct: 134 IYPEFKQLETTNVSLKESDAWPAE 157
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 79.7 bits (195), Expect = 7e-18
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN----FFTGRKDNLV---HHFRNPRFELIR 170
++TG G GS+L + L+ +G EV + F T R +++ H+ +L
Sbjct: 3 IALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHY 62
Query: 171 HDVVEPILLE-------VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA 223
D+ + L D++Y+LA + P T G L +L +
Sbjct: 63 ADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTI 122
Query: 224 KF-----LLTSTSEVYGDPLEHPQKETYWGN 249
+ S PQ ET +
Sbjct: 123 DSGRTVKYYQAGSSEMFGSTPPPQSETTPFH 153
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 74.6 bits (181), Expect = 5e-16
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV--- 173
R+++ G GF+G+HL ++L+ EV +D L +P F + D+
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFL----NHPHFHFVEGDISIH 57
Query: 174 ---VEPILLEVDQIYHLACPASPVHYKYNP 200
+E + + D + L A+P+ Y NP
Sbjct: 58 SEWIEYHVKKCDVVLPLVAIATPIEYTRNP 87
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 73.0 bits (177), Expect = 1e-15
Identities = 25/105 (23%), Positives = 35/105 (33%), Gaps = 7/105 (6%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
R+ VTG GF G L L G V + D+ +
Sbjct: 10 RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQN 69
Query: 178 LLEVDQ-------IYHLACPASPVHYKYNPVKTIKTNVMGTLNML 215
L ++H+A PV+T TNVMGT+ +L
Sbjct: 70 KLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVMGTVYLL 114
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Score = 71.2 bits (172), Expect = 5e-15
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
Query: 119 IVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
I+VTGGAGF+GS++V L D+G +++V+DN G K + N + + D + I
Sbjct: 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDL-NIADYMDKEDFLIQI 60
Query: 178 LLEVDQIYHLACPASPVHYKYNP 200
+ + A
Sbjct: 61 MAGEEFGDVEAIFHEGACSSTTE 83
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 71.2 bits (172), Expect = 9e-15
Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 18/81 (22%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL------------------VH 159
R++V GG G+ G L + EV ++DN D+
Sbjct: 3 RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 62
Query: 160 HFRNPRFELIRHDVVEPILLE 180
EL D+ + L
Sbjct: 63 ALTGKSIELYVGDICDFEFLA 83
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.9 bits (167), Expect = 1e-14
Identities = 18/139 (12%), Positives = 45/139 (32%), Gaps = 8/139 (5%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+I + G G G + + + G EV V+ + ++++ V+
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKT 64
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK-FLLTSTSEVYGD 236
+ D + L + + G N++ K G + +++ + D
Sbjct: 65 VAGQDAVIVLLGTRNDLSPTTV-------MSEGARNIVAAMKAHGVDKVVACTSAFLLWD 117
Query: 237 PLEHPQKETYWGNVNPIGE 255
P + P + + +
Sbjct: 118 PTKVPPRLQAVTDDHIRMH 136
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 67.5 bits (163), Expect = 1e-13
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 7/136 (5%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNP----RFELIRHDV 173
++VTG GFV SH+V++L++ G +V + NL + + D+
Sbjct: 13 LVLVTGANGFVASHVVEQLLEHGYKVRGTAR-SASKLANLQKRWDAKYPGRFETAVVEDM 71
Query: 174 VEPILLE--VDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231
++ + + +A AS V + + + + GTLN L A + TS
Sbjct: 72 LKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTS 131
Query: 232 EVYGDPLEHPQKETYW 247
+ P E +
Sbjct: 132 STVSALIPKPNVEGIY 147
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 65.2 bits (157), Expect = 5e-13
Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 8/133 (6%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG---RKDNLVHHFRNPRFELIRHDVV 174
R+++ GG G++G +V+ I G V+ K ++ +F+ +LI +
Sbjct: 5 RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD 64
Query: 175 EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVY 234
+ L ++ + + + + + + K L S +
Sbjct: 65 DHQRLVDALKQVDVVISALAGGVLSHHILEQLKL-----VEAIKEAGNIKRFLPSEFGMD 119
Query: 235 GDPLEHPQKETYW 247
D +EH +
Sbjct: 120 PDIMEHALQPGSI 132
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 64.4 bits (155), Expect = 1e-12
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG----RKDNLVHHFRNPRFELIRHDV 173
RI++ G G++G H+ +D G ++ T K L+ F+ ++ +
Sbjct: 5 RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 64
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 61.4 bits (147), Expect = 7e-12
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 1/93 (1%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEP 176
++VTG +G G + KL + D+ + + + + + ++ D + P
Sbjct: 5 TVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINP 64
Query: 177 ILLEVDQIYHLACPASPVHYKYNPVKTIKTNVM 209
+D + L + ++P K + +
Sbjct: 65 AFQGIDALVILTSAVPKMKPGFDPTKGGRPEFI 97
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 62.5 bits (150), Expect = 8e-12
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 118 RIVVTGGAGFVGSHLVDKLI-DRGDEVIVIDNFFTGR-KDNLVHHFRNPRFELIRHDVVE 175
R++V GGAG++GSH V L+ D V+++D+ K + V N +L + D +
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 176 PILLEVDQIYHLA 188
P + +
Sbjct: 64 PPWADRYAALEVG 76
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 57.9 bits (138), Expect = 1e-10
Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 17/132 (12%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
+I++TG G +G + +L + EVI D +D ++ V
Sbjct: 3 KILITGANGQLGREIQKQLKGKNVEVIPTD-----VQD----------LDITNVLAVNKF 47
Query: 178 LLEV--DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
E + + + A + + K N +G N+ A VGA+ + ST V+
Sbjct: 48 FNEKKPNVVINCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFD 107
Query: 236 DPLEHPQKETYW 247
+ P E
Sbjct: 108 GEAKEPITEFDE 119
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 56.5 bits (134), Expect = 6e-10
Identities = 27/132 (20%), Positives = 43/132 (32%), Gaps = 14/132 (10%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
I++ G G VG L L G +I +D + NP V
Sbjct: 2 NILLFGKTGQVGWELQRSLAPVG-NLIALDVHSKEFCGDF----SNP-------KGVAET 49
Query: 178 LLEV--DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235
+ ++ D I + A + + P N + A GA + ST V+
Sbjct: 50 VRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFP 109
Query: 236 DPLEHPQKETYW 247
+ P +ET
Sbjct: 110 GTGDIPWQETDA 121
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Score = 51.2 bits (121), Expect = 4e-08
Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 7/86 (8%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
I V G G G+ L+ G V + + + P L + ++ +
Sbjct: 5 TIAVVGATGRQGASLIRVAAAVGHHVRAQVH--SLKGLIAEELQAIPNVTLFQGPLLNNV 62
Query: 178 -----LLEVDQIYHLACPASPVHYKY 198
L E + + +
Sbjct: 63 PLMDTLFEGAHLAFINTTSQAGDEIA 88
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Score = 49.0 bits (115), Expect = 1e-07
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
R+++ G G G HL+D+++ VI + L H R +++ +
Sbjct: 4 RVLLAGATGLTGEHLLDRILSEPTLAKVI----APARKALAEHPRLDNPVGPLAELLPQL 59
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVM 209
+D + + + ++
Sbjct: 60 DGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLP 91
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 4e-06
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVI 146
+ + G +G G L+ +++++G V
Sbjct: 16 SVFILGASGETGRVLLKEILEQGLFSKVT 44
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Score = 39.9 bits (92), Expect = 9e-05
Identities = 12/112 (10%), Positives = 27/112 (24%), Gaps = 5/112 (4%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---- 173
+ VV G G VG L G EV++ + + + + +
Sbjct: 25 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDA 84
Query: 174 -VEPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAK 224
+ ++ + + ++ N G
Sbjct: 85 SRAEAVKGAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGID 136
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Score = 38.9 bits (89), Expect = 2e-04
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 120 VVTGGAGFVGSHLVDKLIDRGDEVIVID-NFFTGRKDNLVHHFRNPRFELIRHDVVEPIL 178
V+ G+GFV +D L D G +V V + +K + P + D
Sbjct: 5 VLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAE 64
Query: 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNV 208
+ + P + K +V
Sbjct: 65 VAKHDLVISLIPYTFHATVIKSAIRQKKHV 94
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 35.5 bits (80), Expect = 0.003
Identities = 16/146 (10%), Positives = 38/146 (26%), Gaps = 1/146 (0%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI 177
++V+ G G G L +L + ++ ++ H+ R
Sbjct: 2 KVVIVGN-GPGGFELAKQLSQTYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60
Query: 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDP 237
I + + + V + + ++ S
Sbjct: 61 WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGI 120
Query: 238 LEHPQKETYWGNVNPIGELLAATAVV 263
L T +V IG+ + ++
Sbjct: 121 LIDDNFRTSAKDVYAIGDCAEYSGII 146
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 36.0 bits (82), Expect = 0.003
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVID 147
+++V GG G +GS +++ G V+ ID
Sbjct: 4 KVIVYGGKGALGSAILEFFKKNGYTVLNID 33
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Score = 34.8 bits (79), Expect = 0.003
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVV 174
R+ +V G + + + +L RG V VI N + ++I D
Sbjct: 2 RKDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPE-DDIKQLEQRLGDNADVIPGDSN 59
Query: 175 EP 176
+
Sbjct: 60 DS 61
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 263 | |||
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 99.93 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 99.9 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.88 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 99.87 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.86 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 99.86 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.84 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 99.84 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 99.84 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 99.83 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 99.82 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 99.81 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 99.81 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.81 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.8 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 99.8 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.79 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.79 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.79 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.78 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.78 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 99.78 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.78 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.78 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.78 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 99.77 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.77 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.77 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 99.77 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.77 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.77 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.76 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.76 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.76 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.76 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.76 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.76 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.76 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.76 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 99.76 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.75 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.75 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.75 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 99.75 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.75 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.75 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.74 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.74 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.74 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.73 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.73 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.73 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.73 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.72 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.72 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.72 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.71 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.71 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.71 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.7 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.69 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.69 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.69 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.68 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.68 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.68 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.67 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.67 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.66 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.65 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.65 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 99.62 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.62 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.62 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.61 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.6 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.6 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.6 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.6 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.6 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.59 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 99.58 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.51 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.42 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.42 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.38 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.37 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.37 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.36 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.35 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.33 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.32 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.31 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.3 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.22 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.22 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.03 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.23 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 98.22 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 98.2 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.19 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.05 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 98.05 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 98.04 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 98.04 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 98.0 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.99 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.98 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.97 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.95 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.91 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.9 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.84 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.83 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.83 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.81 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.8 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.77 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.76 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.74 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.64 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.63 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.62 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.61 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.59 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.57 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.55 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 97.35 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 97.31 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.29 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.24 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 97.23 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.16 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 97.13 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.12 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 97.1 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 97.09 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 97.07 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 97.01 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 97.0 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 96.95 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.93 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 96.91 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.87 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.82 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 96.81 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.78 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.71 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 96.69 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.68 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.62 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.62 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.61 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.59 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 96.55 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 96.49 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.45 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.43 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 96.39 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 96.29 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 96.2 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.19 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 96.13 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.13 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 96.12 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 96.1 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 96.09 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 96.07 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.0 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.97 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.94 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.93 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.93 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 95.92 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 95.87 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 95.83 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 95.81 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.81 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.75 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.62 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 95.61 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.61 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 95.6 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 95.58 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 95.57 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 95.55 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 95.52 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 95.52 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.5 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 95.5 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.49 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 95.42 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.41 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 95.39 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 95.37 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 95.32 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 95.31 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.3 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.28 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.23 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.19 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.1 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 95.08 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 95.0 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 95.0 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 94.96 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 94.95 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 94.93 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.92 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 94.92 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.91 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 94.89 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 94.88 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 94.88 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 94.87 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 94.84 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 94.69 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.69 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.51 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.49 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 94.43 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.4 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 94.38 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 94.34 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 94.24 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 94.21 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 94.17 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.16 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 94.07 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 93.97 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.91 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 93.87 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 93.87 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 93.83 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 93.71 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.56 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 93.47 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 93.29 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 93.26 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 92.89 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 92.87 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 92.69 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.59 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 92.57 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 92.55 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 92.46 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 92.44 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 92.4 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 92.31 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 91.69 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 91.6 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 91.49 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 91.37 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.3 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 91.14 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 90.94 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 90.73 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 90.6 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 90.44 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 90.34 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 90.18 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 90.18 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 89.85 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 89.52 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 89.48 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 89.48 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 89.29 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 88.86 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 88.78 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 88.74 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 88.54 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 88.43 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 88.07 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 88.07 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 87.87 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 87.86 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 87.62 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 87.51 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 87.24 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 87.06 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 87.04 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 86.9 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 86.9 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 86.76 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 86.72 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 86.65 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 86.42 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 86.37 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 86.19 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 85.92 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 85.91 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 85.86 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 85.67 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 85.55 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 84.99 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 84.29 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 84.2 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 84.15 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 83.72 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 83.66 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 83.63 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 82.9 | |
| d1g3qa_ | 237 | Cell division regulator MinD {Archaeon Pyrococcus | 82.7 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 82.65 | |
| d1hyqa_ | 232 | Cell division regulator MinD {Archaeon Archaeoglob | 82.48 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 82.31 | |
| d1f0ka_ | 351 | Peptidoglycan biosynthesis glycosyltransferase Mur | 82.27 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 82.11 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 82.03 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 81.95 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 81.22 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 80.94 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 80.72 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 80.53 | |
| d2o14a2 | 208 | Hypothetical protein YxiM {Bacillus subtilis [TaxI | 80.06 |
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3e-26 Score=202.32 Aligned_cols=147 Identities=67% Similarity=1.083 Sum_probs=132.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHY 196 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~~~ 196 (263)
|+||||||+||||++|+++|+++|++|+++++......+.........++++...|+.+..+.++|+|||+|+......+
T Consensus 2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~VihlAa~~~~~~~ 81 (312)
T d2b69a1 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNY 81 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEECCSCCSHHHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEECcccCCchhH
Confidence 79999999999999999999999999999998766666666565567789999999999999999999999987665556
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 197 KYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 197 ~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
..++.+.+++|+.|+.+++++|++.++++|++||.+|||.+...+.+|+.+...+|..|.+.||.||
T Consensus 82 ~~~~~~~~~~Nv~g~~~ll~~~~~~~~k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK 148 (312)
T d2b69a1 82 MYNPIKTLKTNTIGTLNMLGLAKRVGARLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGK 148 (312)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHH
Confidence 6789999999999999999999999899999999999999888899999888888999999999987
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=5.7e-24 Score=190.87 Aligned_cols=142 Identities=30% Similarity=0.384 Sum_probs=113.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch-hhhhh-----hcCCCceEEEEcccccccc-------CCCcE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVH-----HFRNPRFELIRHDVVEPIL-------LEVDQ 183 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~-~~~~~-----~~~~~~v~~~~~Dv~~~~~-------~~iD~ 183 (263)
|+|||||||||||++|+++|+++|++|++++|...... +.+.. .....+++++.+|++|... .++|+
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~ 81 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDE 81 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCSE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCCE
Confidence 78999999999999999999999999999998643221 11111 1135689999999988632 25799
Q ss_pred EEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC----eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccc
Q 024766 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA----KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAA 259 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~----~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y 259 (263)
|||+|+..+.....+++...+++|+.||.||+++|++.+. +||++||.+|||.+...+++|+ +|..|.+.|
T Consensus 82 v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~-----~~~~P~~~Y 156 (357)
T d1db3a_ 82 VYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKET-----TPFYPRSPY 156 (357)
T ss_dssp EEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTT-----SCCCCCSHH
T ss_pred EEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCC-----CCCCCCChH
Confidence 9999998777667788999999999999999999998753 6999999999998888899999 467788899
Q ss_pred cccC
Q 024766 260 TAVV 263 (263)
Q Consensus 260 ~~sK 263 (263)
|.||
T Consensus 157 ~~sK 160 (357)
T d1db3a_ 157 AVAK 160 (357)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9987
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=8.2e-23 Score=181.58 Aligned_cols=143 Identities=24% Similarity=0.449 Sum_probs=116.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhh--hcCCCceEEEEccccccc-----c--CCCcEEEEc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH--HFRNPRFELIRHDVVEPI-----L--LEVDQIYHL 187 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~--~~~~~~v~~~~~Dv~~~~-----~--~~iD~Vi~~ 187 (263)
|+||||||+||||++|+++|+++|++|++++|........... .....++.++.+|++|.. + .++|+|||+
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHl 80 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF 80 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEEC
Confidence 4799999999999999999999999999999865554433322 224568999999998873 2 269999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
|+.........++...+++|+.|+.+++++|++.++ ++|++||.++|+.....+..|.+ .+..+...|+.+|
T Consensus 81 Aa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~----~~~~p~~~Y~~sK 153 (338)
T d1udca_ 81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESF----PTGTPQSPYGKSK 153 (338)
T ss_dssp CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTS----CCCCCSSHHHHHH
T ss_pred CCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEcccccccccccc----ccCCCcchHHHHH
Confidence 986554445567889999999999999999999987 99999999999877666666664 4567888898876
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.3e-22 Score=178.35 Aligned_cols=142 Identities=28% Similarity=0.319 Sum_probs=113.0
Q ss_pred CEE-EEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch-hhhhhhc------CCCceEEEEcccccccc-------CCC
Q 024766 117 LRI-VVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHF------RNPRFELIRHDVVEPIL-------LEV 181 (263)
Q Consensus 117 k~v-lVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~-~~~~~~~------~~~~v~~~~~Dv~~~~~-------~~i 181 (263)
|+| |||||+||||++|+++|+++|++|++++|...... ..+.+.. ...+++++.+|++|... .++
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 80 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence 467 99999999999999999999999999999754321 1111111 23578999999988622 358
Q ss_pred cEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC----eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCc
Q 024766 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA----KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELL 257 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~----~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~ 257 (263)
++++|+|+.........++...+++|+.||.++++++++.+. ++|++||.+|||.+...+++|+ +|+.|.+
T Consensus 81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~P~~ 155 (347)
T d1t2aa_ 81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKET-----TPFYPRS 155 (347)
T ss_dssp SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTT-----SCCCCCS
T ss_pred ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCC-----CCCCCCC
Confidence 899999976554444567788899999999999999998763 7999999999998888899999 4778889
Q ss_pred cccccC
Q 024766 258 AATAVV 263 (263)
Q Consensus 258 ~Y~~sK 263 (263)
.||.||
T Consensus 156 ~Yg~sK 161 (347)
T d1t2aa_ 156 PYGAAK 161 (347)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999987
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=1.8e-22 Score=179.85 Aligned_cols=142 Identities=27% Similarity=0.454 Sum_probs=114.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhh--hhcCCCceEEEEcccccccc-------CCCcEEEEc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV--HHFRNPRFELIRHDVVEPIL-------LEVDQIYHL 187 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~--~~~~~~~v~~~~~Dv~~~~~-------~~iD~Vi~~ 187 (263)
|.||||||+||||++|+++|+++|++|+++++.......... ......+++++.+|+.|... .++|+|||+
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 81 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF 81 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence 689999999999999999999999999999876554433322 12235678899999987632 269999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCC----CCcCCCCCCCCCCCCcCcccccc
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLE----HPQKETYWGNVNPIGELLAATAV 262 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~----~~~~E~~~~~~~p~~~~~~Y~~s 262 (263)
|+.........++...+.+|+.|+.+++++|++.++ ++|++||..|||.... .+++|+ .|..|.+.||.|
T Consensus 82 Aa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~-----~~~~p~~~Y~~s 156 (347)
T d1z45a2 82 AGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEE-----CPLGPTNPYGHT 156 (347)
T ss_dssp CSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTT-----SCCCCCSHHHHH
T ss_pred cccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccc-----cCCCCCChhHhH
Confidence 987655555667888999999999999999999986 9999999999996543 345555 578888999998
Q ss_pred C
Q 024766 263 V 263 (263)
Q Consensus 263 K 263 (263)
|
T Consensus 157 K 157 (347)
T d1z45a2 157 K 157 (347)
T ss_dssp H
T ss_pred H
Confidence 7
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.86 E-value=3e-22 Score=177.79 Aligned_cols=145 Identities=29% Similarity=0.379 Sum_probs=120.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh------cCCCceEEEEcccccc-----ccCCCc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH------FRNPRFELIRHDVVEP-----ILLEVD 182 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~------~~~~~v~~~~~Dv~~~-----~~~~iD 182 (263)
.+.|+|||||||||||++|+++|+++|++|++++|............ .....+.++.+|..|. .....+
T Consensus 14 ~~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~ 93 (341)
T d1sb8a_ 14 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVD 93 (341)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCS
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeecccccccccccccccc
Confidence 35689999999999999999999999999999998655443322111 1235789999999876 345689
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccc
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATA 261 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~ 261 (263)
.++|+++.........++...+++|+.|+.+++++|.+.+. +||++||.++||...+.+++|+ +|..|.+.|+.
T Consensus 94 ~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~-----~~~~p~~~Y~~ 168 (341)
T d1sb8a_ 94 YVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVED-----TIGKPLSPYAV 168 (341)
T ss_dssp EEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTT-----CCCCCCSHHHH
T ss_pred ccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCC-----CCCCCCCcchH
Confidence 99999987665556678899999999999999999999997 9999999999999888899999 47778889998
Q ss_pred cC
Q 024766 262 VV 263 (263)
Q Consensus 262 sK 263 (263)
||
T Consensus 169 sK 170 (341)
T d1sb8a_ 169 TK 170 (341)
T ss_dssp HH
T ss_pred HH
Confidence 86
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.84 E-value=1.9e-21 Score=174.64 Aligned_cols=147 Identities=27% Similarity=0.409 Sum_probs=113.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeE-EEEecCCc-cchhhhhhhcCCCceEEEEcccccccc-------CCCcEEEEc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEV-IVIDNFFT-GRKDNLVHHFRNPRFELIRHDVVEPIL-------LEVDQIYHL 187 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V-~~l~r~~~-~~~~~~~~~~~~~~v~~~~~Dv~~~~~-------~~iD~Vi~~ 187 (263)
|+||||||+||||++|+++|++.|++| +++++... ...+.........+++++.+|++|... .++|+|||+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl 80 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL 80 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence 479999999999999999999999974 55555422 223334444466789999999998732 268999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC----------CeEEEEcCcceecCCCCCCcCCCCC-----CCCCC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG----------AKFLLTSTSEVYGDPLEHPQKETYW-----GNVNP 252 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~----------~~iV~vSS~~vyg~~~~~~~~E~~~-----~~~~p 252 (263)
|+.........++..++++|+.|+.+++++|++.+ .+||++||.++||.....+..|... ...++
T Consensus 81 Aa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~~ 160 (361)
T d1kewa_ 81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA 160 (361)
T ss_dssp CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred ccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCCC
Confidence 98765545556788999999999999999997653 2899999999999766554444322 23467
Q ss_pred CCcCccccccC
Q 024766 253 IGELLAATAVV 263 (263)
Q Consensus 253 ~~~~~~Y~~sK 263 (263)
..|.+.||.||
T Consensus 161 ~~p~s~Yg~sK 171 (361)
T d1kewa_ 161 YAPSSPYSASK 171 (361)
T ss_dssp CCCCSHHHHHH
T ss_pred CCCCCHHHHHH
Confidence 88999999987
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=99.84 E-value=1.7e-21 Score=171.76 Aligned_cols=142 Identities=31% Similarity=0.437 Sum_probs=114.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeE------EEEecCCc-cchhhhhhhcCCCceEEEEcccccc-----ccCCCcEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEV------IVIDNFFT-GRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQI 184 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V------~~l~r~~~-~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~V 184 (263)
|+|+||||+||||++|+++|+++|++| +.+++... .............++.++.+|..+. ....+|.|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v 80 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI 80 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence 579999999999999999999999754 44544322 2223333333567899999999776 34579999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
+|+|+.........++...+++|+.|+.+++++|.+.+. +||++||.++||.....+++|+ +|..|.+.||.||
T Consensus 81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~-----~~~~p~~~Y~~sK 155 (322)
T d1r6da_ 81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTES-----SPLEPNSPYAASK 155 (322)
T ss_dssp EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTT-----SCCCCCSHHHHHH
T ss_pred EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCC-----CCCCCCCHHHHHH
Confidence 999987655555567888999999999999999999986 9999999999999888899999 5788889999887
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.84 E-value=6e-21 Score=167.29 Aligned_cols=142 Identities=20% Similarity=0.178 Sum_probs=117.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch-hhhhhhcCCCceEEEEcccccccc-------CCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK-DNLVHHFRNPRFELIRHDVVEPIL-------LEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~-~~~~~~~~~~~v~~~~~Dv~~~~~-------~~iD~Vi~~A 188 (263)
|+|||||||||||++|+++|+++|++|++++|...... ..+.......++.++.+|+.|... ...++++|+|
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~a 80 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLA 80 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccccc
Confidence 68999999999999999999999999999998754432 333333345679999999988632 2478999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
+.........++...+.+|+.|+.+++++|++.+. +|++.||..+||.....+.+|+ +|..+.+.|+.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~-----~~~~p~~~Y~~sK 152 (321)
T d1rpna_ 81 AQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN-----TPFYPRSPYGVAK 152 (321)
T ss_dssp SCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-----SCCCCCSHHHHHH
T ss_pred ccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCC-----CCccccChhHHHH
Confidence 76655556677899999999999999999999884 7888999999998888888888 5778889999886
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=8.9e-21 Score=167.94 Aligned_cols=143 Identities=21% Similarity=0.341 Sum_probs=115.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~~iD~Vi~~Ag 189 (263)
|+||||||+||||++|+++|+++|+ +|+++++...... +.....+++++.+|+++. ...++|+|||+|+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~----~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~ 76 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS----RFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVA 76 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG----GGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBC
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchh----hhccCCCeEEEECccCChHHHHHHHHhCCCccccccc
Confidence 4799999999999999999999995 8999987543322 223467899999999764 3346999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCC--CCCCCCcCccccccC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWG--NVNPIGELLAATAVV 263 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~--~~~p~~~~~~Y~~sK 263 (263)
.........++...+.+|+.|+.++++++.+.+.+++++||..+|+........|.... ..++..|...|+.||
T Consensus 77 ~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK 152 (342)
T d2blla1 77 IATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSK 152 (342)
T ss_dssp CCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHH
T ss_pred cccccccccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcchhhhcc
Confidence 76655556678889999999999999999999999999999999998877777776542 234566778899886
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=1e-20 Score=165.57 Aligned_cols=129 Identities=21% Similarity=0.255 Sum_probs=102.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-------ccCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-------ILLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-------~~~~iD~Vi~~A 188 (263)
.|+|||||||||||++|+++|+++|+.|++++++.+ .|+.+. ....+|.|+|+|
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~-------------------~~~~~~~~~~~~~~~~~~d~v~~~a 62 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE-------------------LNLLDSRAVHDFFASERIDQVYLAA 62 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT-------------------CCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh-------------------ccccCHHHHHHHHhhcCCCEEEEcc
Confidence 468999999999999999999999999887764322 122221 123589999999
Q ss_pred CCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 189 CPASPVH-YKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 189 g~~~~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
+...... ...+..+.+.+|+.||.+++++|++.++ +||++||.+|||.....+++|+.+...+|..+.+.||.||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK 139 (315)
T d1e6ua_ 63 AKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAK 139 (315)
T ss_dssp CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHH
T ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHH
Confidence 7543221 2345677789999999999999999997 8999999999999888899998766666777778899987
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.81 E-value=3.2e-20 Score=165.72 Aligned_cols=145 Identities=21% Similarity=0.235 Sum_probs=114.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEcc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLA 188 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~A 188 (263)
.+.|+||||||+||||++|+++|+++|++|+++++........ ......+..+|+.+. .+.++|.|||+|
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a 87 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE-----DMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA 87 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG-----GGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhh-----hcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence 3667899999999999999999999999999998764432211 112345667777664 456899999999
Q ss_pred CCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCC--CCCCCCCcCccccccC
Q 024766 189 CPASPVH-YKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYW--GNVNPIGELLAATAVV 263 (263)
Q Consensus 189 g~~~~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~--~~~~p~~~~~~Y~~sK 263 (263)
+...... ....+...+.+|+.|+.++++++++.++ +||++||..+||.....+..|... ....|..|.+.||.||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~sK 166 (363)
T d2c5aa1 88 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEK 166 (363)
T ss_dssp CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHHHHHH
Confidence 7654432 2567888999999999999999999997 999999999999877766666542 3456888899999887
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=99.81 E-value=3.3e-20 Score=164.92 Aligned_cols=149 Identities=25% Similarity=0.307 Sum_probs=110.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC--CccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF--FTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~--~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~ 187 (263)
.+|+|||||||||||++|+++|++.|++|.++.+. ...............+++++.+|+.|. .+...|.|+|+
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~ 80 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHY 80 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence 37899999999999999999999999875555432 222222222223467899999999876 44679999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCC---C----CcCCCCCCCCCCCCcCcccc
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLE---H----PQKETYWGNVNPIGELLAAT 260 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~---~----~~~E~~~~~~~p~~~~~~Y~ 260 (263)
|+.........++.+.+++|+.|+.+++++++..+.++|++||.++||.... . ..........++..|.+.||
T Consensus 81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y~ 160 (346)
T d1oc2a_ 81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYS 160 (346)
T ss_dssp CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHHH
T ss_pred hhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCCCCHHH
Confidence 9866554455678899999999999999999999999999999999984211 0 11111122346788889999
Q ss_pred ccC
Q 024766 261 AVV 263 (263)
Q Consensus 261 ~sK 263 (263)
.+|
T Consensus 161 ~sK 163 (346)
T d1oc2a_ 161 STK 163 (346)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=5.1e-20 Score=163.36 Aligned_cols=143 Identities=26% Similarity=0.406 Sum_probs=109.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc------hhhhh--hhcCCCceEEEEcccccccc-------CCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR------KDNLV--HHFRNPRFELIRHDVVEPIL-------LEV 181 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~------~~~~~--~~~~~~~v~~~~~Dv~~~~~-------~~i 181 (263)
|+|||||||||||++|+++|+++|++|+++++..... .+... ......++.++.+|++|... .++
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~ 82 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF 82 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccccc
Confidence 6899999999999999999999999999998632221 11111 12246789999999998632 357
Q ss_pred cEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCcccc
Q 024766 182 DQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAAT 260 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~ 260 (263)
|+++|+||..+......++.+.+++|+.|+.++++++++.++ +|+++||+.+||........+.. ....+.+.|+
T Consensus 83 ~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~----~~~~~~~~Y~ 158 (346)
T d1ek6a_ 83 MAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAH----PTGGCTNPYG 158 (346)
T ss_dssp EEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTS----CCCCCSSHHH
T ss_pred ccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccc----cccccCChHH
Confidence 899999987665555567889999999999999999999997 89999999999976554443332 2344556677
Q ss_pred ccC
Q 024766 261 AVV 263 (263)
Q Consensus 261 ~sK 263 (263)
.+|
T Consensus 159 ~~k 161 (346)
T d1ek6a_ 159 KSK 161 (346)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.80 E-value=1.9e-19 Score=153.90 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=96.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
.+++|+++||||+++||+++++.|+++|++|++.+|+..+..+...+. ...++..+.+|++|+ .+..
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~-~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~ 80 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRN-LGRRVLTVKCDVSQPGDVEAFGKQVISTFGR 80 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHH-TTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHH-cCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 578999999999999999999999999999999999765433333222 356789999999886 3457
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vy 234 (263)
+|++|||||......+. +++++.+++|+.|++++++++. +.+ .+||++||.+..
T Consensus 81 iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~ 143 (247)
T d2ew8a1 81 CDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYW 143 (247)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGG
T ss_pred CCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhc
Confidence 99999999986654433 3578889999999999988763 334 399999997654
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=99.80 E-value=9.2e-20 Score=161.67 Aligned_cols=146 Identities=20% Similarity=0.195 Sum_probs=111.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc-------CCCcEEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL-------LEVDQIY 185 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~-------~~iD~Vi 185 (263)
++++|+||||||+||||++|+++|+++|++|++++|.................++++.+|++|... ..+|+|+
T Consensus 5 ~~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~ 84 (356)
T d1rkxa_ 5 FWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVF 84 (356)
T ss_dssp HHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred hhCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhh
Confidence 368899999999999999999999999999999999866555443333234579999999988632 3589999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcCcceecC-CCCCCcCCCCCCCCCCCCcCcccccc
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGD-PLEHPQKETYWGNVNPIGELLAATAV 262 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS~~vyg~-~~~~~~~E~~~~~~~p~~~~~~Y~~s 262 (263)
|+|+.........++...+.+|+.|+.++++++++.+. .+++.||..+|+. ....+.+|+ .+..|.+.|+.+
T Consensus 85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-----~~~~p~~~y~~~ 159 (356)
T d1rkxa_ 85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYREN-----EAMGGYDPYSNS 159 (356)
T ss_dssp ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTT-----SCBCCSSHHHHH
T ss_pred hhhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccc-----cccCCCCccccc
Confidence 99987655445567889999999999999999988764 4555555555543 344455555 466677777765
Q ss_pred C
Q 024766 263 V 263 (263)
Q Consensus 263 K 263 (263)
|
T Consensus 160 k 160 (356)
T d1rkxa_ 160 K 160 (356)
T ss_dssp H
T ss_pred c
Confidence 4
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.79 E-value=1.5e-19 Score=154.84 Aligned_cols=122 Identities=16% Similarity=0.151 Sum_probs=97.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
.++||+++||||+++||++++++|+++|++|++++|+.+..++...+.....++.++.+|++|+ .+..
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 82 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGP 82 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 4789999999999999999999999999999999997665554444443456899999999886 3457
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vy 234 (263)
+|++|||||......+.+ ++++.+++|+.|++++++++. +.+ .+||++||.+.+
T Consensus 83 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~ 146 (251)
T d1zk4a1 83 VSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGF 146 (251)
T ss_dssp CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGT
T ss_pred ceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeecccee
Confidence 999999999866544433 467889999999999998864 233 379999997654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.7e-19 Score=154.04 Aligned_cols=124 Identities=10% Similarity=0.018 Sum_probs=98.5
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------cc
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------IL 178 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~ 178 (263)
..+.||+++||||+++||++++++|+++|++|++++|+.++.++...+.. ...++..+.+|++|+ .+
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 45889999999999999999999999999999999998765554444332 356789999999887 34
Q ss_pred CCCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
..+|++|||||........+ .+++++++|+.|+.++++.+ ++.+. +||++||...+-
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~ 148 (244)
T d1yb1a_ 83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHV 148 (244)
T ss_dssp CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CC
T ss_pred CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcC
Confidence 56999999999876555433 36788999999999988875 34444 899999987653
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.79 E-value=2.4e-19 Score=153.06 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=96.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
.++||+++||||+++||++++++|+++|++|++++|+.++.++...+. ..++..+.+|++|+ .+..
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 80 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL--ADAARYVHLDVTQPAQWKAAVDTAVTAFGG 80 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--hCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 478999999999999999999999999999999999866554444333 35678899999886 2356
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vyg 235 (263)
+|++|||||......+.+ ++++.+++|+.|++++++.+ ++.+ .+||++||...+.
T Consensus 81 idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~ 144 (244)
T d1nffa_ 81 LHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLA 144 (244)
T ss_dssp CCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred CeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEecccccccc
Confidence 999999999866544433 47888999999999998865 3333 3999999976553
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.78 E-value=2.4e-19 Score=153.93 Aligned_cols=120 Identities=15% Similarity=0.137 Sum_probs=96.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
+++||+++||||+++||++++++|+++|++|++++|+.++..+...+. ..++..+.+|++++ .+..
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 79 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL--GDAARYQHLDVTIEEDWQRVVAYAREEFGS 79 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT--GGGEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--CCceEEEEcccCCHHHHHHHHHHHHHHcCC
Confidence 478999999999999999999999999999999999766554444333 45788999999876 3457
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vy 234 (263)
+|++|||||......+. +++++.+++|+.|+.++++.+. +.+ .+||++||.+.+
T Consensus 80 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~ 142 (254)
T d1hdca_ 80 VDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGL 142 (254)
T ss_dssp CCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred ccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhc
Confidence 99999999986655433 2467889999999999988763 333 399999997654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.78 E-value=2.8e-19 Score=153.79 Aligned_cols=122 Identities=15% Similarity=0.108 Sum_probs=95.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh---cCCCceEEEEcccccc------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEP------------I 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~Dv~~~------------~ 177 (263)
.++||+++||||+++||+++++.|+++|++|++++|+.+..++...+. ....++..+.+|++|+ .
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 80 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER 80 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999866554433332 2456788999999886 3
Q ss_pred cCCCcEEEEccCCCCCC-CCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCccee
Q 024766 178 LLEVDQIYHLACPASPV-HYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVY 234 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~-~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vy 234 (263)
+..+|++|||||+.... .++ +++++.+++|+.|++++++++. +.+ .+||++||.+.+
T Consensus 81 ~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~ 147 (258)
T d1iy8a_ 81 FGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGI 147 (258)
T ss_dssp HSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGT
T ss_pred hCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhc
Confidence 45799999999975432 222 3578889999999999988763 223 499999997654
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=99.78 E-value=3.4e-19 Score=156.15 Aligned_cols=146 Identities=27% Similarity=0.379 Sum_probs=104.8
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc-chhhhhhhcCCCceEEEEccccccc-----c--CCCcEEEEccC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG-RKDNLVHHFRNPRFELIRHDVVEPI-----L--LEVDQIYHLAC 189 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~-~~~~~~~~~~~~~v~~~~~Dv~~~~-----~--~~iD~Vi~~Ag 189 (263)
+||||||+||||++|+++|+++|++|+++++.... ..+.........+++++.+|+.+.. + .++|+|||+|+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa 81 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG 81 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence 79999999999999999999999999999864332 2333333335678999999998752 2 24799999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcC-cceecCCCCCCcCCCC-----------CCCCCCCCcC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTST-SEVYGDPLEHPQKETY-----------WGNVNPIGEL 256 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS-~~vyg~~~~~~~~E~~-----------~~~~~p~~~~ 256 (263)
.........++...+++|+.||.|+++++.+.+. ++|+.|| ..+|+.....+..+.. +....+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (338)
T d1orra_ 82 QVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFH 161 (338)
T ss_dssp CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCCC
T ss_pred cccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCccccc
Confidence 7655445567889999999999999999999886 5555555 5555544433322221 1123456667
Q ss_pred ccccccC
Q 024766 257 LAATAVV 263 (263)
Q Consensus 257 ~~Y~~sK 263 (263)
+.|+.+|
T Consensus 162 ~~y~~~k 168 (338)
T d1orra_ 162 SPYGCSK 168 (338)
T ss_dssp HHHHHHH
T ss_pred ccccccc
Confidence 7777654
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=4.5e-19 Score=152.24 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=97.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------ccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~~ 179 (263)
.++||+++||||+++||++++++|+++|++|++++|+.++.++...++. ...++..+.+|++++ .+.
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g 87 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLG 87 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999997665544443332 356788999999886 345
Q ss_pred CCcEEEEccCCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 180 EVDQIYHLACPASPVHYK---YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~---~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
.+|++|||||......++ +++++.+++|+.|++++++.+. +.+. +||++||.+.+.
T Consensus 88 ~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~ 151 (255)
T d1fmca_ 88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAEN 151 (255)
T ss_dssp SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTC
T ss_pred CCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhc
Confidence 799999999976554443 3477889999999999988753 3333 899999976553
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.78 E-value=2.3e-19 Score=154.42 Aligned_cols=121 Identities=12% Similarity=0.082 Sum_probs=95.8
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEcccccc------------cc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEP------------IL 178 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~------------~~ 178 (263)
++||+++||||+++||++++++|+++|++|++++|+.....+.+...+ ...++.++.+|++|+ .+
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM 81 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999997554433333222 356788999999886 34
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vy 234 (263)
..+|++|||||......+. +++++.+++|+.|+.++++.+ ++.+. +||++||.+..
T Consensus 82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~ 146 (260)
T d1x1ta1 82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGL 146 (260)
T ss_dssp SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGT
T ss_pred CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccce
Confidence 5799999999987655543 347888999999999988875 34443 99999997654
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=2e-19 Score=153.45 Aligned_cols=121 Identities=16% Similarity=0.073 Sum_probs=96.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
+++||+++||||+++||++++++|+++|++|++++|+.+..++...+. ..++..+.+|++++ .+..
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~--~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 78 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYL--GANGKGLMLNVTDPASIESVLEKIRAEFGE 78 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHh--CCCCcEEEEEecCHHHhhhhhhhhhcccCC
Confidence 478999999999999999999999999999999999766544433333 34678899999886 3357
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
+|++|||||......+. +++++.+++|+.|++++++++. +.+ .+||++||...+-
T Consensus 79 iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~ 142 (243)
T d1q7ba_ 79 VDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTM 142 (243)
T ss_dssp CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHH
T ss_pred cceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcC
Confidence 99999999986655543 3467889999999999988863 334 4999999976553
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.77 E-value=1.8e-19 Score=162.53 Aligned_cols=147 Identities=25% Similarity=0.300 Sum_probs=104.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc----------------hhhhh--hhcCCCceEEEEccccccc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR----------------KDNLV--HHFRNPRFELIRHDVVEPI 177 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~----------------~~~~~--~~~~~~~v~~~~~Dv~~~~ 177 (263)
||+||||||+||||++|+++|+++|++|+++|+..... .+... ......+++++.+|++|..
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 68999999999999999999999999999997421111 01111 1113467899999998863
Q ss_pred c-------CCCcEEEEccCCCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcCcceecCCCCCCcCCC
Q 024766 178 L-------LEVDQIYHLACPASPVHYKYN---PVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSEVYGDPLEHPQKET 245 (263)
Q Consensus 178 ~-------~~iD~Vi~~Ag~~~~~~~~~~---~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS~~vyg~~~~~~~~E~ 245 (263)
. .++|+|||+|+.........+ +...+.+|+.||.+++++|++.+. ++++.||..+|+... .+..|.
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~-~~~~~~ 159 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPN-IDIEEG 159 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCS-SCBCSS
T ss_pred HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccc-cccccc
Confidence 2 258999999987554333333 456789999999999999999875 678888888887543 233333
Q ss_pred CCC---------CCCCCCcCccccccC
Q 024766 246 YWG---------NVNPIGELLAATAVV 263 (263)
Q Consensus 246 ~~~---------~~~p~~~~~~Y~~sK 263 (263)
++. ...|..|.+.|+.||
T Consensus 160 ~~~~~~~~~~~~~~~~~~p~~~Y~~sK 186 (393)
T d1i24a_ 160 YITITHNGRTDTLPYPKQASSFYHLSK 186 (393)
T ss_dssp EEEEEETTEEEEEECCCCCCSHHHHHH
T ss_pred cccccccccccccccccccccHHHHHh
Confidence 211 124677888999887
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=4.2e-19 Score=152.14 Aligned_cols=121 Identities=17% Similarity=0.119 Sum_probs=96.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccc------------cc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------IL 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~------------~~ 178 (263)
++++|+++||||+++||++++++|+++|++|++++|+.++..+...++. ...++..+.+|++++ .+
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999999999999998766555444432 245788999999886 34
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcce
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSEV 233 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~v 233 (263)
..+|++|||||......+. +++++.+++|+.|++++++.+.+ .+ .+||+++|...
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~ 145 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTV 145 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGG
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchh
Confidence 5799999999976554433 35788899999999999888643 33 39999998643
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.77 E-value=5e-19 Score=152.48 Aligned_cols=122 Identities=16% Similarity=0.109 Sum_probs=96.0
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccc------------cc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------IL 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~------------~~ 178 (263)
+++||+++||||+++||++++++|+++|++|++++|+.+...+.+.+.+ ...++..+.+|++++ .+
T Consensus 4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (261)
T d1geea_ 4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF 83 (261)
T ss_dssp GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999999998654444333332 356788999999886 33
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vy 234 (263)
..+|++|||||......+. +++++.+++|+.|++++++++. +.+ ..||++||.+.+
T Consensus 84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~ 149 (261)
T d1geea_ 84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK 149 (261)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT
T ss_pred CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhc
Confidence 5799999999986655433 3477889999999999888753 333 269999997654
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=99.77 E-value=1.2e-18 Score=154.61 Aligned_cols=146 Identities=23% Similarity=0.294 Sum_probs=106.5
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhh----hcCCCceEEEEcccccc-----ccCCCcEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH----HFRNPRFELIRHDVVEP-----ILLEVDQI 184 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~----~~~~~~v~~~~~Dv~~~-----~~~~iD~V 184 (263)
.+||+||||||+||||++|+++|+++|++|+++.|+..+.. .+.. .........+.+|+.+. .+.++|.|
T Consensus 9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v 87 (342)
T d1y1pa1 9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLA-NLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV 87 (342)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHH-HHHHhhhccccccccEEEeccccchhhhhhhcccchhh
Confidence 35899999999999999999999999999999998654322 2211 11233445577888765 45679999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEcCcceecC--C--CCCCcCCCCC-----------
Q 024766 185 YHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A-KFLLTSTSEVYGD--P--LEHPQKETYW----------- 247 (263)
Q Consensus 185 i~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~-~iV~vSS~~vyg~--~--~~~~~~E~~~----------- 247 (263)
+|+|+.. ....++...+.+|+.||.+++++|.+.+ . +||++||.++++. + .....+|+.|
T Consensus 88 ~~~a~~~---~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~ 164 (342)
T d1y1pa1 88 AHIASVV---SFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTL 164 (342)
T ss_dssp EECCCCC---SCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHS
T ss_pred hhhcccc---cccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccccccc
Confidence 9999643 3456778889999999999999998874 4 8999999765332 1 2233344432
Q ss_pred CCCCCCCcCccccccC
Q 024766 248 GNVNPIGELLAATAVV 263 (263)
Q Consensus 248 ~~~~p~~~~~~Y~~sK 263 (263)
...+|..+.+.|+.||
T Consensus 165 ~e~~~~~p~~~Y~~sK 180 (342)
T d1y1pa1 165 PESDPQKSLWVYAASK 180 (342)
T ss_dssp CTTSTTHHHHHHHHHH
T ss_pred cccCCCCCcCcccchh
Confidence 2345777888899886
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=1.1e-18 Score=149.26 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=92.8
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
.++||+++||||+++||++++++|+++|++|++++|+.+.. +...+. ...++.+|++++ .+..
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~-~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 76 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGK-EVAEAI----GGAFFQVDLEDERERVRFVEEAAYALGR 76 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHH-HHHHHH----TCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHc----CCeEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence 47899999999999999999999999999999999976542 222222 346788999886 3457
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
+|++|||||......+.+ ++++.+++|+.|++++++++. +.+. +||++||.+.+-
T Consensus 77 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~ 140 (248)
T d2d1ya1 77 VDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLF 140 (248)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTS
T ss_pred CCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccc
Confidence 999999999866544433 467889999999999988863 3343 999999976653
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.77 E-value=1.1e-18 Score=150.10 Aligned_cols=122 Identities=16% Similarity=0.095 Sum_probs=96.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------ccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~~ 179 (263)
+++||+++||||+++||++++++|+++|++|++++|+.++.++...++. ...++..+.+|++++ .+.
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 5789999999999999999999999999999999998666555544432 356788899999875 233
Q ss_pred -CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCccee
Q 024766 180 -EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVY 234 (263)
Q Consensus 180 -~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vy 234 (263)
.+|++|||||......+. +++++.+++|+.|++++.+++. +.+. +||++||....
T Consensus 85 ~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~ 149 (259)
T d2ae2a_ 85 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGA 149 (259)
T ss_dssp TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGT
T ss_pred CCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccc
Confidence 599999999976554433 3477889999999999888763 3333 99999997654
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=5.1e-19 Score=151.56 Aligned_cols=120 Identities=20% Similarity=0.213 Sum_probs=94.2
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILL 179 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~ 179 (263)
..++||+++||||+++||+++++.|+++|++|++++|+.+..++...+ ..+..++.+|++|+ .+.
T Consensus 2 ~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~---~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g 78 (250)
T d1ydea1 2 TRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQE---LPGAVFILCDVTQEDDVKTLVSETIRRFG 78 (250)
T ss_dssp CTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---CTTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh---cCCCeEEEccCCCHHHHHHHHHHHHHhcC
Confidence 357999999999999999999999999999999999875544333322 24678899999886 345
Q ss_pred CCcEEEEccCCCCCC-CCC----CCHHHHHHHHHHHHHHHHHHHH----HcCCeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPV-HYK----YNPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~-~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~~~iV~vSS~~vy 234 (263)
.+|++|||||..... .++ +++++.+++|+.|++++++++. +.+.+||++||.+.+
T Consensus 79 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~~~~ 142 (250)
T d1ydea1 79 RLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGA 142 (250)
T ss_dssp CCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHH
T ss_pred CCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCccccccccc
Confidence 799999999965432 222 2478889999999999988763 334599999997654
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.76 E-value=4.9e-19 Score=151.84 Aligned_cols=120 Identities=19% Similarity=0.163 Sum_probs=95.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
.+++|+++||||+++||++++++|+++|++|++.+|+.+..++...+. ..+...+.+|++++ .+..
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 80 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL--GERSMFVRHDVSSEADWTLVMAAVQRRLGT 80 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH--CTTEEEECCCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--CCCeEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 478999999999999999999999999999999998765544444333 45677889999876 3457
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~~vy 234 (263)
+|++|||||......+. +++++.+++|+.|++++++++.+ .+.+||++||.+.+
T Consensus 81 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~ 142 (253)
T d1hxha_ 81 LNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSW 142 (253)
T ss_dssp CCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred CCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhh
Confidence 99999999986554433 34788899999999998888643 33499999997654
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.76 E-value=8.3e-19 Score=150.58 Aligned_cols=119 Identities=18% Similarity=0.157 Sum_probs=95.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~i 181 (263)
++||+++||||+++||++++++|+++|++|++++|+.+..++...+. ..++..+.+|++++ .+..+
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~--~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i 80 (256)
T d1k2wa_ 3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI--GPAACAIALDVTDQASIDRCVAELLDRWGSI 80 (256)
T ss_dssp TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh--CCceEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence 78999999999999999999999999999999999766555544443 46788999999887 33579
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----Hc--CCeEEEEcCccee
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RV--GAKFLLTSTSEVY 234 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~--~~~iV~vSS~~vy 234 (263)
|++|||||......+. +++++.+++|+.|+.++++++. +. +.+||++||.+.+
T Consensus 81 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~ 143 (256)
T d1k2wa_ 81 DILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGR 143 (256)
T ss_dssp CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred cEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhc
Confidence 9999999976554433 3478889999999999988642 22 2389999997654
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.76 E-value=5.8e-19 Score=151.92 Aligned_cols=122 Identities=14% Similarity=0.132 Sum_probs=95.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------ccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~~ 179 (263)
.++||+++||||+++||+++++.|+++|++|++++|+.+..++...++. ...++..+.+|++++ .+.
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFG 81 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999999999999999997665544433332 345788999999886 345
Q ss_pred CCcEEEEccCCCCC-CCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCccee
Q 024766 180 EVDQIYHLACPASP-VHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vy 234 (263)
.+|++|||||.... ..+. +++++.+++|+.|++++++++. +.+ .+||++||.+.+
T Consensus 82 ~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~ 146 (260)
T d1zema1 82 KIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGV 146 (260)
T ss_dssp CCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred CCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhc
Confidence 79999999997543 2232 2477889999999999988763 233 399999997654
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.76 E-value=1.3e-18 Score=148.20 Aligned_cols=120 Identities=16% Similarity=0.092 Sum_probs=94.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc--------ccCCCcEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQI 184 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~--------~~~~iD~V 184 (263)
+++||+++||||+++||++++++|+++|++|++++|+.++..+...+. ..+..+.+|++++ .+..+|++
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~g~iDil 78 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC---PGIEPVCVDLGDWDATEKALGGIGPVDLL 78 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHHHHHHHHHcCCCeEE
Confidence 478999999999999999999999999999999999765544433332 4577889999886 34679999
Q ss_pred EEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH-----cC-CeEEEEcCcceec
Q 024766 185 YHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR-----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 185 i~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~-----~~-~~iV~vSS~~vyg 235 (263)
|||||......+. +++++.+++|+.|+.++.+.+.+ .. .+||++||...+.
T Consensus 79 VnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~ 139 (242)
T d1cyda_ 79 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV 139 (242)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS
T ss_pred EECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc
Confidence 9999976654433 24678899999999999886532 23 3899999986543
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=1.4e-18 Score=147.67 Aligned_cols=112 Identities=17% Similarity=0.145 Sum_probs=87.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
.+++|+++||||+++||++++++|+++|++|++++|+.+.. .++..+.+|++|+ .+..
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~----------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 73 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP----------KGLFGVEVDVTDSDAVDRAFTAVEEHQGP 73 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC----------TTSEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh----------cCceEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 47999999999999999999999999999999999875532 3456788999886 2356
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCccee
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vy 234 (263)
+|++|||||......+. +++++.+++|+.++..+++.+ ++.+. +||++||.+.+
T Consensus 74 iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~ 136 (237)
T d1uzma1 74 VEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGL 136 (237)
T ss_dssp CSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-
T ss_pred ceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhc
Confidence 99999999986554433 357888999999999887764 34444 99999997654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.6e-18 Score=147.83 Aligned_cols=121 Identities=16% Similarity=0.109 Sum_probs=95.3
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc--------ccCCCcE
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQ 183 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~--------~~~~iD~ 183 (263)
..++||+++||||+++||++++++|+++|++|++++|+.++.++...+. ..+..+.+|++|+ .+..+|+
T Consensus 3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~g~iDi 79 (244)
T d1pr9a_ 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC---PGIEPVCVDLGDWEATERALGSVGPVDL 79 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHHHHHHHHHhCCceE
Confidence 3579999999999999999999999999999999999765544433332 3577889999886 4467999
Q ss_pred EEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH-----cC-CeEEEEcCcceec
Q 024766 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR-----VG-AKFLLTSTSEVYG 235 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~-----~~-~~iV~vSS~~vyg 235 (263)
+|||||......+. +++++.+++|+.++.++.+.+.+ .+ .+||++||.+...
T Consensus 80 lVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~ 141 (244)
T d1pr9a_ 80 LVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR 141 (244)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS
T ss_pred EEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc
Confidence 99999986654432 35788899999999998887532 23 3899999976543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.76 E-value=1.2e-18 Score=149.20 Aligned_cols=122 Identities=13% Similarity=-0.005 Sum_probs=97.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------ccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILL 179 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~~ 179 (263)
.+++|+++||||+++||++++++|+++|++|++++|+.+..++...++. ...++..+.+|++++ .+.
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g 86 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK 86 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999999999999997665554444432 245789999999886 345
Q ss_pred CCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vy 234 (263)
.+|++|||||......+. +++++.+++|+.|++++++++ ++.+ .+||++||...+
T Consensus 87 ~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~ 150 (251)
T d2c07a1 87 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGL 150 (251)
T ss_dssp CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHH
T ss_pred CceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhc
Confidence 799999999976554433 357888999999999988875 3334 399999997654
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.76 E-value=7e-19 Score=154.88 Aligned_cols=141 Identities=23% Similarity=0.280 Sum_probs=107.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch----hhh---hhhcCCCceEEEEcccccccc-------CCCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK----DNL---VHHFRNPRFELIRHDVVEPIL-------LEVD 182 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~----~~~---~~~~~~~~v~~~~~Dv~~~~~-------~~iD 182 (263)
|++||||||||||++|+++|+++|++|++++|...... +.+ ........+.+..+|+.+... .++|
T Consensus 2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~D 81 (339)
T d1n7ha_ 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD 81 (339)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhccc
Confidence 78999999999999999999999999999998643211 111 111234578899999987532 3689
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC------CeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcC
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG------AKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGEL 256 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~------~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~ 256 (263)
+|||+|+........+++...+.+|+.|+.+++++++... .++++.||..+|+. ...+++|+ +|..|.
T Consensus 82 ~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~-~~~~~~E~-----~~~~p~ 155 (339)
T d1n7ha_ 82 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGS-TPPPQSET-----TPFHPR 155 (339)
T ss_dssp EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTT-SCSSBCTT-----SCCCCC
T ss_pred hhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceeccc-CCCCCCCC-----CCCCCc
Confidence 9999998765555556888999999999999999986542 26777777777764 44678888 578899
Q ss_pred ccccccC
Q 024766 257 LAATAVV 263 (263)
Q Consensus 257 ~~Y~~sK 263 (263)
+.||.+|
T Consensus 156 ~~Y~~sK 162 (339)
T d1n7ha_ 156 SPYAASK 162 (339)
T ss_dssp SHHHHHH
T ss_pred chhhHHH
Confidence 9999876
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.75 E-value=1.6e-18 Score=148.69 Aligned_cols=120 Identities=16% Similarity=0.074 Sum_probs=95.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------ccCCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLEV 181 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~~~i 181 (263)
.||+++||||+++||++++++|+++|++|++.+|+.+..++...++. ...++..+.+|++++ .+..+
T Consensus 1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 80 (257)
T d2rhca1 1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV 80 (257)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 37899999999999999999999999999999998665554444332 355789999999887 34579
Q ss_pred cEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH------cC-CeEEEEcCccee
Q 024766 182 DQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR------VG-AKFLLTSTSEVY 234 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~------~~-~~iV~vSS~~vy 234 (263)
|++|||||......+. +++++.+++|+.|++++++++.+ .+ .+||++||...+
T Consensus 81 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~ 144 (257)
T d2rhca1 81 DVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK 144 (257)
T ss_dssp SEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGT
T ss_pred CEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccc
Confidence 9999999986654433 34788899999999999998754 23 389999997654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.75 E-value=1.8e-18 Score=148.80 Aligned_cols=122 Identities=14% Similarity=0.095 Sum_probs=90.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------cc-
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------IL- 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~- 178 (263)
.+++|+++||||+++||++++++|+++|++|++++|+.++.++...+.. ...++..+.+|++++ .+
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG 84 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 5689999999999999999999999999999999998766555444432 356789999999876 22
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vy 234 (263)
..+|++|||||......+. +++++.+++|+.|++++++.+. +.+ .+||++||....
T Consensus 85 g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~ 149 (259)
T d1xq1a_ 85 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGV 149 (259)
T ss_dssp TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC-----
T ss_pred CCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhccccccccccccccccccc
Confidence 3599999999976554433 3478889999999999988763 333 499999997654
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.75 E-value=1.8e-18 Score=149.33 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=96.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
.+++|+++||||+++||++++++|+++|++|++++|+.+..++...+......+.++.+|++++ .+..
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGK 82 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4789999999999999999999999999999999998766555555554456788899999886 3457
Q ss_pred CcEEEEccCCCCCCC--CC----CCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCccee
Q 024766 181 VDQIYHLACPASPVH--YK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVY 234 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~--~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vy 234 (263)
+|++|||||...... .. +++++.+++|+.|++++++.+.+ .+. ++|++||.+.+
T Consensus 83 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~ 147 (268)
T d2bgka1 83 LDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSF 147 (268)
T ss_dssp CCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGT
T ss_pred cceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCcccccccccc
Confidence 999999999754332 22 24778899999999999887643 333 89999987554
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.75 E-value=1.4e-18 Score=156.23 Aligned_cols=148 Identities=20% Similarity=0.321 Sum_probs=108.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHh-CCCeEEEEecCCcc--------chhhhhh----------hcCCCceEEEEcccccc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLID-RGDEVIVIDNFFTG--------RKDNLVH----------HFRNPRFELIRHDVVEP 176 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~-~G~~V~~l~r~~~~--------~~~~~~~----------~~~~~~v~~~~~Dv~~~ 176 (263)
+|+||||||+||||++|+++|++ .|++|+++|+.... ..+.... ......+.++.+|++|.
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~ 81 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE 81 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence 46899999999999999999996 68999999852211 0111110 01245688999999886
Q ss_pred c--------cCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCCCCc--CCC
Q 024766 177 I--------LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLEHPQ--KET 245 (263)
Q Consensus 177 ~--------~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~~~~--~E~ 245 (263)
. ...+|+|||+|+.........++...+.+|+.|+.++++++++.+. +++++||..+|+....... .+.
T Consensus 82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 161 (383)
T d1gy8a_ 82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE 161 (383)
T ss_dssp HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccccc
Confidence 2 2357999999987665555567788899999999999999999987 8999999988885433221 122
Q ss_pred CCCCCCCCCcCccccccC
Q 024766 246 YWGNVNPIGELLAATAVV 263 (263)
Q Consensus 246 ~~~~~~p~~~~~~Y~~sK 263 (263)
.....++..|.+.|+.+|
T Consensus 162 ~~~e~~~~~p~~~Y~~sK 179 (383)
T d1gy8a_ 162 PIDINAKKSPESPYGESK 179 (383)
T ss_dssp CBCTTSCCBCSSHHHHHH
T ss_pred ccccccCCCCCCHHHhhH
Confidence 223346888999999886
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.75 E-value=5.6e-18 Score=145.26 Aligned_cols=119 Identities=17% Similarity=0.105 Sum_probs=93.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhh--hhhhcCCCceEEEEcccccc-------------c
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN--LVHHFRNPRFELIRHDVVEP-------------I 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~--~~~~~~~~~v~~~~~Dv~~~-------------~ 177 (263)
++++|+|+||||+++||.+++++|+++|++|++++|+.++..+. +.......++.++.+|++.+ .
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 81 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ 81 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999998876654322 22233566889999999732 2
Q ss_pred cCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc--------CCeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV--------GAKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~--------~~~iV~vSS~~vyg 235 (263)
+..+|+||||||.. ..+++++.+++|+.|+.++.+++.+. +.+||++||...+.
T Consensus 82 ~g~iDilvnnAG~~----~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~ 143 (254)
T d1sbya1 82 LKTVDILINGAGIL----DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFN 143 (254)
T ss_dssp HSCCCEEEECCCCC----CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTS
T ss_pred cCCCCEEEeCCCCC----CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhcc
Confidence 35699999999854 35678999999999999998876431 13799999976653
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.75 E-value=8.4e-19 Score=150.78 Aligned_cols=125 Identities=22% Similarity=0.211 Sum_probs=100.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----cc--CCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL--LEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~--~~iD~Vi~~Ag 189 (263)
|+||||||+||||++|+++|.++|+ +++++++... +.+|+.|. .+ .++|+|||+||
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~----------------~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa 63 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKE----------------FCGDFSNPKGVAETVRKLRPDVIVNAAA 63 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSS----------------SCCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCcc----------------ccCcCCCHHHHHHHHHHcCCCEEEEecc
Confidence 5799999999999999999999995 5555554321 12355443 22 25799999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
.........++...+.+|+.++.++++++++.+.+++++||+.+|+...+.+.+|++ +..|.+.|+.+|
T Consensus 64 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ss~~~~~~~~~~~~~E~~-----~~~p~~~y~~~k 132 (298)
T d1n2sa_ 64 HTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHYSTDYVFPGTGDIPWQETD-----ATSPLNVYGKTK 132 (298)
T ss_dssp CCCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTCEEEEEEEGGGSCCCTTCCBCTTS-----CCCCSSHHHHHH
T ss_pred cccccccccCccccccccccccccchhhhhccccccccccccccccCCCCCCCcccc-----ccCCCchHhhhh
Confidence 776666778899999999999999999999998899999999999988888999994 666777777654
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.9e-18 Score=147.29 Aligned_cols=124 Identities=16% Similarity=0.049 Sum_probs=97.3
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEcccccc-----------
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEP----------- 176 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~----------- 176 (263)
...+++|+++||||+++||++++++|+++|++|++.+|+.++.++...++. ...++..+.+|++++
T Consensus 5 M~~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~ 84 (257)
T d1xg5a_ 5 MERWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIR 84 (257)
T ss_dssp CGGGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHH
Confidence 345899999999999999999999999999999999998665554444332 235788999999886
Q ss_pred -ccCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcC---CeEEEEcCccee
Q 024766 177 -ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG---AKFLLTSTSEVY 234 (263)
Q Consensus 177 -~~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~---~~iV~vSS~~vy 234 (263)
.+..+|++|||||........ +++++.+++|+.|++++.+.+ ++.+ .+||++||.+.+
T Consensus 85 ~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~ 154 (257)
T d1xg5a_ 85 SQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGH 154 (257)
T ss_dssp HHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGT
T ss_pred HhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhc
Confidence 345799999999976554433 346788999999999987775 3333 489999997654
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=4.1e-18 Score=145.96 Aligned_cols=116 Identities=18% Similarity=0.165 Sum_probs=93.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEcccccc------------ccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEP------------ILL 179 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~------------~~~ 179 (263)
+||+++||||+++||++++++|+++|++|++++|+.++..+...+.. ...++.++.+|++++ .+.
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999998766554444332 345789999999886 345
Q ss_pred CCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc------C--CeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV------G--AKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~------~--~~iV~vSS~~vy 234 (263)
.+|++|||||... ..++++.+++|+.+++++.+++.+. + .+||++||.+.+
T Consensus 82 ~iDilVnnAg~~~----~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~ 140 (254)
T d2gdza1 82 RLDILVNNAGVNN----EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGL 140 (254)
T ss_dssp CCCEEEECCCCCC----SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGT
T ss_pred CcCeecccccccc----cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhc
Confidence 7999999998653 3578999999999999888876322 1 279999997654
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.74 E-value=4e-18 Score=146.13 Aligned_cols=118 Identities=19% Similarity=0.109 Sum_probs=92.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------ccCCCcE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLEVDQ 183 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~~~iD~ 183 (263)
|.++||||+++||++++++|+++|++|++++|+.++.++...++. ...++..+.+|++++ .+..+|+
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 81 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV 81 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence 567999999999999999999999999999998665544443332 346788999999886 3467999
Q ss_pred EEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC--CeEEEEcCccee
Q 024766 184 IYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG--AKFLLTSTSEVY 234 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~--~~iV~vSS~~vy 234 (263)
+|||||......+. +++++.+++|+.|++++++++. +.+ .+||++||.+.+
T Consensus 82 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~ 142 (255)
T d1gega_ 82 IVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGH 142 (255)
T ss_dssp EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT
T ss_pred EEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhc
Confidence 99999976554433 3467889999999999988753 233 379999997654
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.73 E-value=5.9e-18 Score=146.40 Aligned_cols=119 Identities=15% Similarity=0.145 Sum_probs=91.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc----CCCceEEEEcccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF----RNPRFELIRHDVVEP------------ 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~Dv~~~------------ 176 (263)
.+++|+++||||+++||++++++|+++|++|++++|+.++.++...++. ...++..+.+|++++
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 81 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK 81 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999998765554444432 234789999999886
Q ss_pred ccCCCcEEEEccCCCCCCCC-----CC---CHHHHHHHHHHHHHHHHHHHHH----cCCeEEEEcCc
Q 024766 177 ILLEVDQIYHLACPASPVHY-----KY---NPVKTIKTNVMGTLNMLGLAKR----VGAKFLLTSTS 231 (263)
Q Consensus 177 ~~~~iD~Vi~~Ag~~~~~~~-----~~---~~~~~~~~Nv~gt~~ll~~a~~----~~~~iV~vSS~ 231 (263)
.+.++|++|||||......+ +. ++++.+++|+.|++++++++.. .+..+|+++|+
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~Ss 148 (272)
T d1xkqa_ 82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNVSSI 148 (272)
T ss_dssp HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCG
T ss_pred HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccccch
Confidence 34579999999997654332 12 3678899999999999888643 33466665553
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=5.9e-18 Score=144.09 Aligned_cols=119 Identities=16% Similarity=0.172 Sum_probs=91.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
.+++|+++||||+++||++++++|+++|++|++++|+.++.++... ..+...+.+|++++ .+..
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 77 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAE----AVGAHPVVMDVADPASVERGFAEALAHLGR 77 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTTCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----HcCCeEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 3689999999999999999999999999999999997554443332 33567889999886 3356
Q ss_pred CcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc----CC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV----GA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~~-~iV~vSS~~vyg 235 (263)
+|++|||||......+. +++++.+++|+.|++++.+++.+. +. .++++||.+..+
T Consensus 78 iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~~~~~ 141 (242)
T d1ulsa_ 78 LDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRVYLG 141 (242)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGGGGC
T ss_pred ceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccccccC
Confidence 99999999986554433 347888999999999999886432 33 677777755443
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.73 E-value=5.9e-18 Score=145.72 Aligned_cols=119 Identities=13% Similarity=0.086 Sum_probs=89.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc----CCCceEEEEcccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF----RNPRFELIRHDVVEP------------ 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~Dv~~~------------ 176 (263)
.+++|+++||||+++||++++++|+++|++|++++|+.++.++...++. ...++..+.+|++++
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~ 81 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLG 81 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999998665554444332 234689999999876
Q ss_pred ccCCCcEEEEccCCCCCCC--------CCCCHHHHHHHHHHHHHHHHHHHH----HcCCeEEEEcCc
Q 024766 177 ILLEVDQIYHLACPASPVH--------YKYNPVKTIKTNVMGTLNMLGLAK----RVGAKFLLTSTS 231 (263)
Q Consensus 177 ~~~~iD~Vi~~Ag~~~~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~~iV~vSS~ 231 (263)
.+..+|++|||||...... ..+++++.+++|+.|++++++++. +.+..+|+++|+
T Consensus 82 ~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~~S~ 148 (264)
T d1spxa_ 82 KFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSI 148 (264)
T ss_dssp HHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCT
T ss_pred HhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccCcceeeeee
Confidence 3457999999999753221 113477889999999999888864 333467766664
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.73 E-value=6.9e-18 Score=146.27 Aligned_cols=118 Identities=19% Similarity=0.164 Sum_probs=92.0
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCCC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEV 181 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~i 181 (263)
++||+++||||+++||++++++|+++|++|++++|+.++..+...+. ..++..+.+|++++ .+..+
T Consensus 3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~--~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 80 (276)
T d1bdba_ 3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH--GDNVLGIVGDVRSLEDQKQAASRCVARFGKI 80 (276)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH--GGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc--CCCeeEEecccccHHHHHHHHHHHHHHhCCc
Confidence 68999999999999999999999999999999999765544433332 45788999999876 34579
Q ss_pred cEEEEccCCCCCCC-----CCC----CHHHHHHHHHHHHHHHHHHH----HHcCCeEEEEcCcce
Q 024766 182 DQIYHLACPASPVH-----YKY----NPVKTIKTNVMGTLNMLGLA----KRVGAKFLLTSTSEV 233 (263)
Q Consensus 182 D~Vi~~Ag~~~~~~-----~~~----~~~~~~~~Nv~gt~~ll~~a----~~~~~~iV~vSS~~v 233 (263)
|++|||||...... ..+ ++++.+++|+.|+.++++++ ++.+.++|+++|...
T Consensus 81 dilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~g~iI~i~S~~~ 145 (276)
T d1bdba_ 81 DTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASRGNVIFTISNAG 145 (276)
T ss_dssp CEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGG
T ss_pred ccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcCCCceeeeechh
Confidence 99999999754322 122 26788999999999988876 344458888888643
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.72 E-value=5.1e-18 Score=144.68 Aligned_cols=118 Identities=14% Similarity=0.064 Sum_probs=91.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccc------------ccCCCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ILLEVD 182 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~------------~~~~iD 182 (263)
+.|+||||+++||++++++|+++|++|++.+++.+...+.+.+.+ ...++..+.+|++|+ .+..+|
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 81 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID 81 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 379999999999999999999999999988765544444433332 246788999999886 345799
Q ss_pred EEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCccee
Q 024766 183 QIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVY 234 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vy 234 (263)
++|||||......+. +++++.+++|+.|++++++.+. +.+ .+||++||.+.+
T Consensus 82 iLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~ 142 (244)
T d1edoa_ 82 VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGL 142 (244)
T ss_dssp EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHH
T ss_pred ccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhc
Confidence 999999976655433 3578889999999999988763 334 399999997654
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.72 E-value=8.4e-18 Score=144.45 Aligned_cols=123 Identities=17% Similarity=0.087 Sum_probs=96.4
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccc------------c
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------I 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~------------~ 177 (263)
.++++|+++||||+++||++++++|+++|++|++++|+.++..+...++. ...++..+.+|++++ .
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 84 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDAD 84 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999998877655544432 256788999999887 3
Q ss_pred cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH-----cCC-eEEEEcCccee
Q 024766 178 LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR-----VGA-KFLLTSTSEVY 234 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~-----~~~-~iV~vSS~~vy 234 (263)
+..+|++|||||......+. +++++.+++|+.|+.++++.+.+ .+. .|++++|...+
T Consensus 85 ~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~ 151 (260)
T d1h5qa_ 85 LGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQ 151 (260)
T ss_dssp SCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT
T ss_pred hCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccc
Confidence 45699999999976554433 34778899999999998887532 233 67777776554
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.72 E-value=8.5e-18 Score=142.94 Aligned_cols=118 Identities=11% Similarity=0.069 Sum_probs=91.9
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCe-------EEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------c
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDE-------VIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------I 177 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~-------V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~ 177 (263)
.|+||||+++||++++++|+++|++ |++.+|+.+..++...+.. ...++..+.+|++|+ .
T Consensus 3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~ 82 (240)
T d2bd0a1 3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER 82 (240)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999999997 8888887655544444332 356788999999886 3
Q ss_pred cCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
+..+|++|||||......+. +++++.+++|+.|++++++++. +.+ .+||++||.+.+.
T Consensus 83 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~ 149 (240)
T d2bd0a1 83 YGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATK 149 (240)
T ss_dssp TSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred cCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcC
Confidence 45799999999986655443 3478889999999999888763 334 3999999976553
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=6e-17 Score=133.75 Aligned_cols=113 Identities=17% Similarity=0.195 Sum_probs=91.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~Ag 189 (263)
.+|+|+||||||+||++++++|+++|++|+++.|+.++..+. ....++++.+|+.|. .+.++|+|||++|
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~-----~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g 76 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSE-----GPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSS-----SCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccc-----cccccccccccccchhhHHHHhcCCCEEEEEec
Confidence 578999999999999999999999999999999976654322 345688999999876 4678999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCCCC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDPLE 239 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~~~ 239 (263)
........ .++..++.++++++++.++ ++|++||.++|+++..
T Consensus 77 ~~~~~~~~-------~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~ 120 (205)
T d1hdoa_ 77 TRNDLSPT-------TVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTK 120 (205)
T ss_dssp CTTCCSCC-------CHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTC
T ss_pred cCCchhhh-------hhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCcc
Confidence 64322111 3778899999999999997 9999999998875543
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.71 E-value=1.7e-17 Score=143.70 Aligned_cols=122 Identities=14% Similarity=0.081 Sum_probs=92.9
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc----CCCceEEEEcccccc------------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF----RNPRFELIRHDVVEP------------ 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~Dv~~~------------ 176 (263)
.++||+++||||+++||++++++|+++|++|++++|+.++.++...++. ...++..+.+|++++
T Consensus 1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (274)
T d1xhla_ 1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLA 80 (274)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999999999999999998665544433332 234789999999886
Q ss_pred ccCCCcEEEEccCCCCCCC--CC----CCHHHHHHHHHHHHHHHHHHHHH----cCC-eEEEEcCccee
Q 024766 177 ILLEVDQIYHLACPASPVH--YK----YNPVKTIKTNVMGTLNMLGLAKR----VGA-KFLLTSTSEVY 234 (263)
Q Consensus 177 ~~~~iD~Vi~~Ag~~~~~~--~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~~-~iV~vSS~~vy 234 (263)
.+..+|++|||||...... .. +++++.+++|+.|++++++++.+ .+. +|+++||.+..
T Consensus 81 ~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~ 149 (274)
T d1xhla_ 81 KFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGP 149 (274)
T ss_dssp HHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSS
T ss_pred HcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhcc
Confidence 3457999999999643322 11 24788899999999999888643 333 77777776543
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.71 E-value=3e-17 Score=140.95 Aligned_cols=123 Identities=15% Similarity=0.096 Sum_probs=96.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEccccccc------------c-
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEPI------------L- 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~~------------~- 178 (263)
+++||+++||||+++||++++++|+++|++|++++|+.+..++...+.. ....+..+.+|++++. +
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~ 82 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD 82 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999999999999999998765544443332 3567888999998762 2
Q ss_pred CCCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcCcceec
Q 024766 179 LEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS~~vyg 235 (263)
..+|+|+||||......+.+ ++++.+++|+.+++++.+++. +.+. +||++||.....
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~ 148 (258)
T d1ae1a_ 83 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFS 148 (258)
T ss_dssp SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTS
T ss_pred CCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccccccccccccccc
Confidence 24899999999866544432 478889999999999988763 2233 999999987653
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=3.3e-17 Score=138.64 Aligned_cols=114 Identities=16% Similarity=0.147 Sum_probs=88.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccCCCcEEEEc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHL 187 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~~iD~Vi~~ 187 (263)
+++|+++||||+++||++++++|+++|++|++++|+.+..+ + ...+++.+|+.+. .+.++|++|||
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~----~----~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnn 73 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLK----R----SGHRYVVCDLRKDLDLLFEKVKEVDILVLN 73 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH----H----TCSEEEECCTTTCHHHHHHHSCCCSEEEEC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH----h----cCCcEEEcchHHHHHHHHHHhCCCcEEEec
Confidence 68999999999999999999999999999999998643322 1 1335677888764 45679999999
Q ss_pred cCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcCC-eEEEEcCcceec
Q 024766 188 ACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 188 Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~~-~iV~vSS~~vyg 235 (263)
||......+. +++++.+++|+.++.++++++ ++.+. +||+++|.....
T Consensus 74 AG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~ 130 (234)
T d1o5ia_ 74 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS 130 (234)
T ss_dssp CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS
T ss_pred ccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccc
Confidence 9976544433 347788999999999988876 33343 899999976543
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=5.7e-17 Score=139.79 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=94.2
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccc------------ccC
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------ILL 179 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~------------~~~ 179 (263)
++||+++||||+++||++++++|+++|++|++++|+.++.++...+.. ....+..+.+|+.+. ...
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g 91 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG 91 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999999999998766555444332 456777888887654 235
Q ss_pred CCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHH----HHcCCeEEEEcCccee
Q 024766 180 EVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLA----KRVGAKFLLTSTSEVY 234 (263)
Q Consensus 180 ~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a----~~~~~~iV~vSS~~vy 234 (263)
.+|+++||||........+ ++++.+++|+.|+..+.+.+ ++.+.++|++||.+.+
T Consensus 92 ~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G~ii~isS~~~~ 154 (269)
T d1xu9a_ 92 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGK 154 (269)
T ss_dssp SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGT
T ss_pred CccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCCcceEeccchhc
Confidence 6999999999765544332 35677999999998887775 3334599999997654
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=2e-17 Score=145.17 Aligned_cols=121 Identities=16% Similarity=0.117 Sum_probs=86.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc-----hhhh---hhhcCCCceEEEEcccccc--------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-----KDNL---VHHFRNPRFELIRHDVVEP-------- 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~-----~~~~---~~~~~~~~v~~~~~Dv~~~-------- 176 (263)
.++||+++||||+++||++++++|+++|++|++.++..+.. .+.+ .+... .......+|+.+.
T Consensus 4 ~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~v~ 82 (302)
T d1gz6a_ 4 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIR-RRGGKAVANYDSVEAGEKLVK 82 (302)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHH-HTTCEEEEECCCGGGHHHHHH
T ss_pred CcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHh-hcccccccccchHHHHHHHHH
Confidence 47899999999999999999999999999999998764321 1111 11111 1122233444332
Q ss_pred ----ccCCCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCccee
Q 024766 177 ----ILLEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVY 234 (263)
Q Consensus 177 ----~~~~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vy 234 (263)
.+..+|++|||||+.....+.+ ++++.+++|+.|++++++++ ++.+ .+||++||.+.+
T Consensus 83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~ 153 (302)
T d1gz6a_ 83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGI 153 (302)
T ss_dssp HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHH
T ss_pred HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhc
Confidence 3467999999999876555433 46788999999999998885 3344 399999997543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.69 E-value=3.6e-17 Score=140.28 Aligned_cols=119 Identities=16% Similarity=0.083 Sum_probs=93.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccc------------cc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------IL 178 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~------------~~ 178 (263)
.++||+++||||+++||++++++|+++|++|++.+++.++..+.+.+.+ ...++..+.+|++++ .+
T Consensus 3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~ 82 (259)
T d1ja9a_ 3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF 82 (259)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999999999999988776555444443333 355788999999876 33
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCc
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTS 231 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~ 231 (263)
..+|++|||||........ +.+++.+++|+.+.+++++.+.+.- .++++++|.
T Consensus 83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~ 142 (259)
T d1ja9a_ 83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSI 142 (259)
T ss_dssp SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccc
Confidence 5699999999986555433 2467889999999999999986542 267766664
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.68 E-value=1e-16 Score=136.40 Aligned_cols=118 Identities=14% Similarity=0.061 Sum_probs=89.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHH---hCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc--------------
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLI---DRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI-------------- 177 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll---~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~-------------- 177 (263)
.||+|+||||+++||.+++++|+ ++|++|++.+|+.++.++.........++.++.+|++|+.
T Consensus 1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~ 80 (248)
T d1snya_ 1 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTK 80 (248)
T ss_dssp CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred CcCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhh
Confidence 37899999999999999999997 4799999999987765443222224568999999998861
Q ss_pred cCCCcEEEEccCCCCCCC-CC-C---CHHHHHHHHHHHHHHHHHHHHH----c------------CCeEEEEcCcc
Q 024766 178 LLEVDQIYHLACPASPVH-YK-Y---NPVKTIKTNVMGTLNMLGLAKR----V------------GAKFLLTSTSE 232 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~-~~-~---~~~~~~~~Nv~gt~~ll~~a~~----~------------~~~iV~vSS~~ 232 (263)
...+|++|||||...... .. . ++++.+++|+.|+..+++.+.. . +.++|++||..
T Consensus 81 ~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~ 156 (248)
T d1snya_ 81 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSIL 156 (248)
T ss_dssp GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGG
T ss_pred cCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccc
Confidence 245999999999754432 22 2 3667899999999998887532 1 23899999964
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.68 E-value=8.7e-17 Score=138.76 Aligned_cols=124 Identities=19% Similarity=0.137 Sum_probs=97.3
Q ss_pred CccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccc----------
Q 024766 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP---------- 176 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~---------- 176 (263)
|....++||+++||||+++||++++++|+++|++|++++++.++..+...+.+ ...++..+.+|++++
T Consensus 11 ~~~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~ 90 (272)
T d1g0oa_ 11 PQSASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEA 90 (272)
T ss_dssp GGGGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHH
Confidence 44556899999999999999999999999999999999987655444433332 356789999999886
Q ss_pred --ccCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCcc
Q 024766 177 --ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSE 232 (263)
Q Consensus 177 --~~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~ 232 (263)
.+..+|++|||+|........ +++++.+++|+.++.++++++...- .++++++|..
T Consensus 91 ~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~ 155 (272)
T d1g0oa_ 91 VKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSIT 155 (272)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGG
T ss_pred HHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccc
Confidence 345799999999976554433 2467889999999999999986542 3788887753
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.68 E-value=6.6e-17 Score=137.39 Aligned_cols=119 Identities=18% Similarity=0.171 Sum_probs=92.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
.++||+++||||+++||++++++|+++|++|++++|+.+...+...+. ..++.++.+|++++ .+.+
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~ 79 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAAL--EAEAIAVVADVSDPKAVEAVFAEALEEFGR 79 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTC--CSSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc--CCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 378999999999999999999999999999999999876554443332 45788899999876 3357
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCcce
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEV 233 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~v 233 (263)
+|++|||||......+.+ ++++.+++|+.++.++++++.... ..++++||.+.
T Consensus 80 iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~ 139 (241)
T d2a4ka1 80 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG 139 (241)
T ss_dssp CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred ccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccc
Confidence 999999999765544332 467889999999999999876543 25666666543
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.67 E-value=2.8e-17 Score=140.50 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=92.3
Q ss_pred ccCCCCEEEEEcCCC--hHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------c
Q 024766 112 IGRRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------I 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG--~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~ 177 (263)
.+++||+++||||+| +||++++++|+++|++|++.+|+++...+.............+.+|++++ .
T Consensus 4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 83 (256)
T d1ulua_ 4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA 83 (256)
T ss_dssp ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHh
Confidence 468999999999988 89999999999999999988887543332222222345677899999876 3
Q ss_pred cCCCcEEEEccCCCCCC----CC----CCCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPV----HY----KYNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~----~~----~~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
+..+|++|||||..... .+ .++++..+++|+.++..+++.+... +.+||++||.....
T Consensus 84 ~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~ 152 (256)
T d1ulua_ 84 FGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEK 152 (256)
T ss_dssp HSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTS
T ss_pred cCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcC
Confidence 45699999999864321 11 2246678999999999999987654 23899999976543
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.4e-16 Score=139.52 Aligned_cols=122 Identities=16% Similarity=0.142 Sum_probs=95.2
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc------CCCceEEEEcccccc----------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF------RNPRFELIRHDVVEP---------- 176 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~------~~~~v~~~~~Dv~~~---------- 176 (263)
.++||+++||||+++||++++++|+++|++|++++|+.++..+...++. ...++..+.+|++++
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~ 88 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST 88 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence 5899999999999999999999999999999999998665544433321 245789999999886
Q ss_pred --ccCCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHc-----CCeEEEEcCccee
Q 024766 177 --ILLEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKRV-----GAKFLLTSTSEVY 234 (263)
Q Consensus 177 --~~~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~~-----~~~iV~vSS~~vy 234 (263)
.+..+|++|||||......+. +++++.+++|+.|++++++++.+. +.+||++|+....
T Consensus 89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~~ 157 (297)
T d1yxma1 89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTKA 157 (297)
T ss_dssp HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCTT
T ss_pred HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccccccccccccccc
Confidence 245799999999976544433 357788999999999999887432 2378888765433
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=2.9e-16 Score=133.66 Aligned_cols=116 Identities=15% Similarity=0.058 Sum_probs=90.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc--------ccCCCcEE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQI 184 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~--------~~~~iD~V 184 (263)
.++||+++||||+++||+++++.|+++|++|++++|++++.++ ......+....+|+.++ .+..+|++
T Consensus 3 ~l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~l 78 (245)
T d2ag5a1 3 RLDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQE----LEKYPGIQTRVLDVTKKKQIDQFANEVERLDVL 78 (245)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGG----GGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHH----HHhccCCceeeeeccccccccccccccccceeE
Confidence 3789999999999999999999999999999999987544332 22345677777787654 33579999
Q ss_pred EEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHH----cC-CeEEEEcCcc
Q 024766 185 YHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLAKR----VG-AKFLLTSTSE 232 (263)
Q Consensus 185 i~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a~~----~~-~~iV~vSS~~ 232 (263)
|||||......+. +++++.+++|+.++..+.+.+.. .+ .+||++||..
T Consensus 79 Vn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~ 135 (245)
T d2ag5a1 79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVA 135 (245)
T ss_dssp EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSB
T ss_pred EecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechh
Confidence 9999986654433 24778899999999999887643 33 3999999864
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.2e-16 Score=137.95 Aligned_cols=118 Identities=18% Similarity=0.121 Sum_probs=93.2
Q ss_pred CCEE-EEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------ccCC
Q 024766 116 RLRI-VVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 116 ~k~v-lVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
||+| +||||+++||.+++++|+++ |++|++.+|+.++.++...++. ...++.++.+|+++. .+..
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~ 81 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 81 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 5565 89999999999999999986 8999999998776555544432 356788999999886 2356
Q ss_pred CcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCcce
Q 024766 181 VDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEV 233 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~v 233 (263)
+|++|||||+.......+ +++..+++|+.|++++++.+...- .+||++||...
T Consensus 82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~ 141 (275)
T d1wmaa1 82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMS 141 (275)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHH
T ss_pred cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccce
Confidence 999999999866544433 356778999999999999986542 38999999643
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=1.9e-16 Score=135.56 Aligned_cols=122 Identities=14% Similarity=0.012 Sum_probs=93.5
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHh---CCCeEEEEecCCccchhhhhhh---cCCCceEEEEccccccc---------
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLID---RGDEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEPI--------- 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~---~G~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~Dv~~~~--------- 177 (263)
.++||+++||||+++||++++++|++ +|++|++++|+.+..++...++ ....++..+.+|++++.
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~ 82 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV 82 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence 57899999999999999999999986 7999999999876554443333 23557899999998861
Q ss_pred -------cCCCcEEEEccCCCCCCC---CC----CCHHHHHHHHHHHHHHHHHHHHHc----C---CeEEEEcCccee
Q 024766 178 -------LLEVDQIYHLACPASPVH---YK----YNPVKTIKTNVMGTLNMLGLAKRV----G---AKFLLTSTSEVY 234 (263)
Q Consensus 178 -------~~~iD~Vi~~Ag~~~~~~---~~----~~~~~~~~~Nv~gt~~ll~~a~~~----~---~~iV~vSS~~vy 234 (263)
...+|++|||||...... .. +++++.+++|+.|+.++++++.+. + .+||++||.+.+
T Consensus 83 ~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~ 160 (259)
T d1oaaa_ 83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL 160 (259)
T ss_dssp HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT
T ss_pred HHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 124789999999754322 22 246788999999999999987543 2 279999997654
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.62 E-value=2.1e-16 Score=134.85 Aligned_cols=121 Identities=21% Similarity=0.250 Sum_probs=98.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----cc--CCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----IL--LEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~--~~iD~Vi~~Ag 189 (263)
|+|||||||||||++|+++|.++|++|++++|..- |+.|. .+ .++|+|||+|+
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~--------------------D~~d~~~~~~~l~~~~~d~vih~a~ 61 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDL--------------------DITNVLAVNKFFNEKKPNVVINCAA 61 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTC--------------------CTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhc--------------------cCCCHHHHHHHHHHcCCCEEEeecc
Confidence 46999999999999999999999999999987421 33322 22 26899999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCcccccc
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAV 262 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~s 262 (263)
..........+...+.+|+.++.++...+......+++.||..+|+.....+..|.+ +..+...|+.+
T Consensus 62 ~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ss~~v~~~~~~~~~~e~~-----~~~~~~~~~~~ 129 (281)
T d1vl0a_ 62 HTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEFD-----EVNPQSAYGKT 129 (281)
T ss_dssp CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGSCSCCSSCBCTTS-----CCCCCSHHHHH
T ss_pred ccccccccccchhhcccccccccccccccccccccccccccceeeeccccccccccc-----cccchhhhhhh
Confidence 765555566778889999999999999998888899999999999998888999985 55566666654
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=6e-16 Score=134.52 Aligned_cols=119 Identities=20% Similarity=0.196 Sum_probs=87.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC---ccch---hhhhhh-cCCCceEEEEccccccc----------c
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF---TGRK---DNLVHH-FRNPRFELIRHDVVEPI----------L 178 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~---~~~~---~~~~~~-~~~~~v~~~~~Dv~~~~----------~ 178 (263)
.|.|+||||+++||++++++|+++|++|+.+++.. +... +...+. ....++..+.+|++|+. .
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE 81 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence 35789999999999999999999999876655432 2111 111221 13568999999998862 2
Q ss_pred CCCcEEEEccCCCCCCCCC----CCHHHHHHHHHHHHHHHHHHH----HHcC-CeEEEEcCccee
Q 024766 179 LEVDQIYHLACPASPVHYK----YNPVKTIKTNVMGTLNMLGLA----KRVG-AKFLLTSTSEVY 234 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~----~~~~~~~~~Nv~gt~~ll~~a----~~~~-~~iV~vSS~~vy 234 (263)
..+|+++||||........ +++++.+++|+.|+.++++++ ++.+ .+||++||.+..
T Consensus 82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~ 146 (285)
T d1jtva_ 82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGL 146 (285)
T ss_dssp SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGT
T ss_pred cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhc
Confidence 4599999999976654433 346788999999999988875 3444 499999997554
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.4e-16 Score=130.93 Aligned_cols=116 Identities=16% Similarity=0.119 Sum_probs=91.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~ 186 (263)
.++|+|+|||||||||++++++|+++|. +|+++.|++....... ...++...+|..+. .+.++|++||
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~-----~~~i~~~~~D~~~~~~~~~~~~~~d~vi~ 86 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA-----YKNVNQEVVDFEKLDDYASAFQGHDVGFC 86 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGG-----GGGCEEEECCGGGGGGGGGGGSSCSEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccc-----cceeeeeeecccccccccccccccccccc
Confidence 4568999999999999999999999996 8999999765433322 23556666776553 4577999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDP 237 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~ 237 (263)
|+|.. ....+.....++|+.++.+++++|++.++ +||++||.++++.+
T Consensus 87 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~~~~~~~ 135 (232)
T d2bkaa1 87 CLGTT---RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADKSS 135 (232)
T ss_dssp CCCCC---HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTTC
T ss_pred ccccc---ccccchhhhhhhcccccceeeecccccCccccccCCccccccCc
Confidence 99742 22334567789999999999999999997 89999999988744
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=1.5e-15 Score=128.25 Aligned_cols=112 Identities=20% Similarity=0.127 Sum_probs=79.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------c--cCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------I--LLE 180 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~--~~~ 180 (263)
+||+|+||||+|+||++++++|+++|++|+++++....... .......|..+. . ..+
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEAS---------ASVIVKMTDSFTEQADQVTAEVGKLLGDQK 71 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTSS---------EEEECCCCSCHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc---------ccceeecccCcHHHHHHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999999886443211 111222222111 1 135
Q ss_pred CcEEEEccCCCCCCC-CC----CCHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVH-YK----YNPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~-~~----~~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
+|++|||||...... .. +++++.|++|+.++.++++++.+. +.+||++||.+.+.
T Consensus 72 iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~ 134 (236)
T d1dhra_ 72 VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALD 134 (236)
T ss_dssp EEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS
T ss_pred ceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcC
Confidence 899999999533222 22 246678999999999999988654 23899999986553
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.60 E-value=1.6e-15 Score=129.37 Aligned_cols=121 Identities=19% Similarity=0.288 Sum_probs=90.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc---hhhhhhhc-CCCceEEEEccccccc-----------c
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR---KDNLVHHF-RNPRFELIRHDVVEPI-----------L 178 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~---~~~~~~~~-~~~~v~~~~~Dv~~~~-----------~ 178 (263)
.+++++||||+|+||++++++|+++|+ +|+++.|+.... .+...+.. ...++.++.+|++|.. .
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~ 87 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDD 87 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhcccccc
Confidence 456999999999999999999999999 577788764332 22222221 3568999999998861 1
Q ss_pred CCCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcce-ec
Q 024766 179 LEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEV-YG 235 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~v-yg 235 (263)
..+|.||||+|........+ +++..+++|+.|+.++.+++...+. +||++||.+. +|
T Consensus 88 ~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g 150 (259)
T d2fr1a1 88 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFG 150 (259)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTC
T ss_pred ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccC
Confidence 24899999999866555433 3566789999999999998877665 8999999654 44
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.60 E-value=4e-16 Score=133.23 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=82.0
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCCCcEEE
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLEVDQIY 185 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~iD~Vi 185 (263)
+++||||+++||++++++|+++|++|++.+|+.+..++......... .+|++++ .+..+|++|
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~-----~~dv~~~~~~~~~~~~~~~~~G~iDiLV 76 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYP-----QLKPMSEQEPAELIEAVTSAYGQVDVLV 76 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCT-----TSEECCCCSHHHHHHHHHHHHSCCCEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEE-----EeccCCHHHHHHHHHHHHHHcCCCCEEE
Confidence 79999999999999999999999999999987665443222111122 2344333 346799999
Q ss_pred EccCCCCC-CCCC----CCHHHHHHHHHHHHHHHHHHHH----HcC-CeEEEEcCcceec
Q 024766 186 HLACPASP-VHYK----YNPVKTIKTNVMGTLNMLGLAK----RVG-AKFLLTSTSEVYG 235 (263)
Q Consensus 186 ~~Ag~~~~-~~~~----~~~~~~~~~Nv~gt~~ll~~a~----~~~-~~iV~vSS~~vyg 235 (263)
||||.... ..+. +++++.+++|+.|++++++++. +.+ .+||++||.+.+.
T Consensus 77 nNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~ 136 (252)
T d1zmta1 77 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFG 136 (252)
T ss_dssp EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTS
T ss_pred ECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeeccccccccc
Confidence 99996533 2222 3477889999999999888753 333 4999999986654
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.60 E-value=3.4e-15 Score=126.98 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=77.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCCCceEEEEccccccc------------c--
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------L-- 178 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------~-- 178 (263)
+.|+|+||||+++||.+++++|+++|+ .|++.+|+.++..+ +.+. ...++.++.+|+++.. +
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~-l~~~-~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~ 79 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE-LKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEIVGS 79 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH-HHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHHHGG
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHH-HHHh-hCCceEEEEEecCCHHHHHHHHHHHHHHhCC
Confidence 358999999999999999999999996 67777887655433 3332 4567999999998761 1
Q ss_pred CCCcEEEEccCCCCCCC-C-C---CCHHHHHHHHHHHHHHHHHHH
Q 024766 179 LEVDQIYHLACPASPVH-Y-K---YNPVKTIKTNVMGTLNMLGLA 218 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~-~-~---~~~~~~~~~Nv~gt~~ll~~a 218 (263)
..+|++|||||...... . + +++++.+++|+.|+.++++.+
T Consensus 80 ~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~ 124 (250)
T d1yo6a1 80 DGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKL 124 (250)
T ss_dssp GCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHT
T ss_pred CCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHH
Confidence 23999999999754322 2 2 236788999999999988875
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=2.5e-15 Score=127.50 Aligned_cols=121 Identities=20% Similarity=0.244 Sum_probs=92.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------------ccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------------ILLE 180 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------------~~~~ 180 (263)
.++||+++||||+++||++++++|+++|++|++++|+.+..++...+. .........|+.+. ....
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKL--GNNCVFAPADVTSEKDVQTALALAKGKFGR 79 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHH--CTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh--CCCccccccccccccccccccccccccccc
Confidence 478999999999999999999999999999999999877766555544 34667777777654 2345
Q ss_pred CcEEEEccCCCCCCCC----------CCCHHHHHHHHHHHHHHHHHHHHHc----------CC-eEEEEcCcceec
Q 024766 181 VDQIYHLACPASPVHY----------KYNPVKTIKTNVMGTLNMLGLAKRV----------GA-KFLLTSTSEVYG 235 (263)
Q Consensus 181 iD~Vi~~Ag~~~~~~~----------~~~~~~~~~~Nv~gt~~ll~~a~~~----------~~-~iV~vSS~~vyg 235 (263)
.|.++++++....... .+.+++.+++|+.|++++.+++... +. +||++||...+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~ 155 (248)
T d2o23a1 80 VDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFE 155 (248)
T ss_dssp CCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHH
T ss_pred ccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhcc
Confidence 8999999876443221 1246788999999999999987432 22 799999987653
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.60 E-value=1.6e-15 Score=127.81 Aligned_cols=110 Identities=23% Similarity=0.215 Sum_probs=79.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc--------------ccCCCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------------ILLEVD 182 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~--------------~~~~iD 182 (263)
.+|+||||+|+||++++++|+++|++|++++|+.....+ ......+|+.+. ....+|
T Consensus 3 gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD 73 (235)
T d1ooea_ 3 GKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQAD---------SNILVDGNKNWTEQEQSILEQTASSLQGSQVD 73 (235)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTSS---------EEEECCTTSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhccc---------ccceeccccCchhHHHHHHHHHHHHhcCCCee
Confidence 478999999999999999999999999999987553221 112222333211 235699
Q ss_pred EEEEccCCCCCC-CCCC----CHHHHHHHHHHHHHHHHHHHHHc---CCeEEEEcCcceec
Q 024766 183 QIYHLACPASPV-HYKY----NPVKTIKTNVMGTLNMLGLAKRV---GAKFLLTSTSEVYG 235 (263)
Q Consensus 183 ~Vi~~Ag~~~~~-~~~~----~~~~~~~~Nv~gt~~ll~~a~~~---~~~iV~vSS~~vyg 235 (263)
+||||||..... ...+ .++..+++|+.++.++++++... +.+||++||.+.+.
T Consensus 74 ~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~ 134 (235)
T d1ooea_ 74 GVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG 134 (235)
T ss_dssp EEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS
T ss_pred EEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC
Confidence 999999964332 2222 35667899999999999988654 23899999976553
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.59 E-value=3.1e-15 Score=129.94 Aligned_cols=123 Identities=14% Similarity=0.044 Sum_probs=92.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccc------------c
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEP------------I 177 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~------------~ 177 (263)
..++||+++||||+|+||++++++|+++|++|++++|+.++..+...++. ....+..+.+|++++ .
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~ 100 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV 100 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhh
Confidence 57999999999999999999999999999999999998766555444432 356788999999876 2
Q ss_pred cCCCcEEEEccCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHH----H-cCC-eEEEEcCccee
Q 024766 178 LLEVDQIYHLACPASPVHYKY----NPVKTIKTNVMGTLNMLGLAK----R-VGA-KFLLTSTSEVY 234 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~~----~~~~~~~~Nv~gt~~ll~~a~----~-~~~-~iV~vSS~~vy 234 (263)
+..+|++|||||......... ++...+.+|+.+...+...+. . ... .+++++|....
T Consensus 101 ~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~ 167 (294)
T d1w6ua_ 101 AGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAE 167 (294)
T ss_dssp TCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHH
T ss_pred ccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhh
Confidence 356999999999765544332 356677889888877766532 2 223 67777776543
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=5.1e-15 Score=127.02 Aligned_cols=136 Identities=24% Similarity=0.312 Sum_probs=98.1
Q ss_pred EEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEE-cccccc-----ccCCCcEEEEccCCC
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIR-HDVVEP-----ILLEVDQIYHLACPA 191 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~-~Dv~~~-----~~~~iD~Vi~~Ag~~ 191 (263)
||||||+||||++|+++|+++|+ +|+++++........ ........+... .|..+. .+..+++|+|.|+..
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~ 79 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFV--NLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACS 79 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGH--HHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhh--cccccchhhhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence 89999999999999999999996 799987654432221 111223333333 233332 345689999999743
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecCCCCCCcCCCCCCCCCCCCcCccccccC
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGDPLEHPQKETYWGNVNPIGELLAATAVV 263 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~~~~~~~~E~~~~~~~p~~~~~~Y~~sK 263 (263)
. ....+......+|+.++.+++++++..++++|+.||..+|+.+......|+ ++..+.+.|+.+|
T Consensus 80 ~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~v~~ss~~~~~~~~~~~~~~~-----~~~~~~~~Y~~~K 144 (307)
T d1eq2a_ 80 S--TTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESR-----EYEKPLNVYGYSK 144 (307)
T ss_dssp C--TTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSG-----GGCCCSSHHHHHH
T ss_pred c--ccccccccccccccccccccccccccccccccccccccccccccccccccc-----ccccccccccccc
Confidence 3 234466778899999999999999999889999999888887766666665 4566778888876
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.51 E-value=2.7e-14 Score=117.65 Aligned_cols=111 Identities=16% Similarity=0.206 Sum_probs=82.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCCCceEEEEccc---cccccCCCcEEEEccCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV---VEPILLEVDQIYHLACP 190 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv---~~~~~~~iD~Vi~~Ag~ 190 (263)
.|+|+|||||||||++++++|+++|+ +|+++.|+.... ..+++....|+ .+.....+|+||||+|.
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~---------~~~~~~~~~d~~~~~~~~~~~~d~vi~~~g~ 72 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE---------HPRLDNPVGPLAELLPQLDGSIDTAFCCLGT 72 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC---------CTTEECCBSCHHHHGGGCCSCCSEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh---------cccccccccchhhhhhccccchheeeeeeee
Confidence 47999999999999999999999998 566666543221 22333334443 23344568999999974
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecCC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGDP 237 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~~ 237 (263)
.. ...........+|+.++.+++++|++.+. +++++||.++++..
T Consensus 73 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~~~~~~~ 118 (212)
T d2a35a1 73 TI--KEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADAKS 118 (212)
T ss_dssp CH--HHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCTTC
T ss_pred ec--cccccccccccchhhhhhhccccccccccccccccccccccccc
Confidence 32 12234567889999999999999999987 89999999988744
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=2.5e-13 Score=115.28 Aligned_cols=120 Identities=15% Similarity=0.031 Sum_probs=86.0
Q ss_pred cCCCCEEEEEcCCC--hHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------c
Q 024766 113 GRRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------I 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG--~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~ 177 (263)
.++||+++||||+| +||+++++.|+++|++|++.+|+++ ..+.+.+.. ..........|+.+. .
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK-LKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKV 80 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhc
Confidence 47899999999998 8999999999999999999998754 333333332 234455666676554 3
Q ss_pred cCCCcEEEEccCCCCCCCCCC---------CHHHHHHHHHHHHHHHHHHHHHcC---CeEEEEcCcce
Q 024766 178 LLEVDQIYHLACPASPVHYKY---------NPVKTIKTNVMGTLNMLGLAKRVG---AKFLLTSTSEV 233 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~~---------~~~~~~~~Nv~gt~~ll~~a~~~~---~~iV~vSS~~v 233 (263)
...+|++||||+......... .+...+.+|+.+...+++.+...- ..||++||.+.
T Consensus 81 ~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~ 148 (258)
T d1qsga_ 81 WPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGA 148 (258)
T ss_dssp CSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGG
T ss_pred ccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhh
Confidence 345899999998754433221 234556888888888888876542 36888888754
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.42 E-value=4.2e-13 Score=115.12 Aligned_cols=117 Identities=15% Similarity=0.106 Sum_probs=80.0
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEcc-----------------cccc-
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHD-----------------VVEP- 176 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~D-----------------v~~~- 176 (263)
.++||||+++||++++++|+++|++|++.+++.....+.+.+.+ .......+.+| +++.
T Consensus 4 VAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~~~ 83 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTLFT 83 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCCHH
Confidence 68999999999999999999999999999887655444433322 23344444444 4433
Q ss_pred -----------ccCCCcEEEEccCCCCCCCCCC----C--------------HHHHHHHHHHHHHHHHHHHHHc------
Q 024766 177 -----------ILLEVDQIYHLACPASPVHYKY----N--------------PVKTIKTNVMGTLNMLGLAKRV------ 221 (263)
Q Consensus 177 -----------~~~~iD~Vi~~Ag~~~~~~~~~----~--------------~~~~~~~Nv~gt~~ll~~a~~~------ 221 (263)
.+..+|++|||||......+.+ + +...+.+|+.++..+.+.+.+.
T Consensus 84 ~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 163 (284)
T d1e7wa_ 84 RCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGTPA 163 (284)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhhHH
Confidence 2457999999999765443322 1 1235789999999988875431
Q ss_pred ---C-C-eEEEEcCccee
Q 024766 222 ---G-A-KFLLTSTSEVY 234 (263)
Q Consensus 222 ---~-~-~iV~vSS~~vy 234 (263)
+ . +|++++|....
T Consensus 164 ~~~~~~~~ii~~~s~~~~ 181 (284)
T d1e7wa_ 164 KHRGTNYSIINMVDAMTN 181 (284)
T ss_dssp GGSCSCEEEEEECCTTTT
T ss_pred HhcCCCCccccccccccc
Confidence 2 2 67777776543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.38 E-value=2.4e-14 Score=117.09 Aligned_cols=105 Identities=11% Similarity=0.111 Sum_probs=74.6
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEE
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIY 185 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi 185 (263)
+.++++|+++||||+|+||+++++.|+++|++|++++|+.++..+..........+....+|+.+. .+.++|+||
T Consensus 18 ~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDili 97 (191)
T d1luaa1 18 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVF 97 (191)
T ss_dssp TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeee
Confidence 457899999999999999999999999999999999998766554444433333445566677654 567899999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q 024766 186 HLACPASPVHYKYNPVKTIKTNVMGTLNML 215 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll 215 (263)
||||........++++..+.+|+.+..+.+
T Consensus 98 n~Ag~g~~~~~~e~~~~~~~~nv~~~~~~~ 127 (191)
T d1luaa1 98 TAGAIGLELLPQAAWQNESSIEIVADYNAQ 127 (191)
T ss_dssp ECCCTTCCCBCHHHHHTCTTCCEEEECCCS
T ss_pred ecCccccccCCHHHHHhhhcceeehhHhhH
Confidence 999864322223334444556665554443
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.37 E-value=8.5e-13 Score=108.47 Aligned_cols=115 Identities=15% Similarity=0.201 Sum_probs=84.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCe--EEEEecCCccchhhhhhhcCCCceEEEEcccccc-----ccCCCcEEEEc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDE--VIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~--V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~ 187 (263)
.+++||||||+||||++++++|+++|++ |+.+.|++++.. . ....++++.+|+.+. .+.++|.|||+
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~----~--~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~ 75 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE----K--IGGEADVFIGDITDADSINPAFQGIDALVIL 75 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH----H--TTCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH----h--ccCCcEEEEeeeccccccccccccceeeEEE
Confidence 4679999999999999999999999975 445555433221 1 134567888888775 45689999999
Q ss_pred cCCCCCCC-------------CCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceec
Q 024766 188 ACPASPVH-------------YKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 188 Ag~~~~~~-------------~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg 235 (263)
|+...... ..........+|+.|+.+++..+..... ...+.|+...+.
T Consensus 76 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 137 (252)
T d2q46a1 76 TSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTN 137 (252)
T ss_dssp CCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTC
T ss_pred EeeccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCC
Confidence 98543211 1123455668999999999999988776 788888776654
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.37 E-value=7.9e-13 Score=113.08 Aligned_cols=122 Identities=11% Similarity=-0.022 Sum_probs=77.9
Q ss_pred cCCCCEEEEEcCCC--hHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-CCCceEEEEcccccc------------c
Q 024766 113 GRRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-RNPRFELIRHDVVEP------------I 177 (263)
Q Consensus 113 ~~~~k~vlVTGatG--~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-~~~~v~~~~~Dv~~~------------~ 177 (263)
.++||+++||||+| +||.+++++|+++|++|++++|+++ ..+.+.++. ......+...|++++ .
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 80 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD 80 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH
Confidence 47899999999877 8999999999999999999999743 333333222 245566778888765 3
Q ss_pred cCCCcEEEEccCCCCCCCCC-----CCHHHHH---HHHHHHHHHHHHHHHHcC--C-eEEEEcCcceec
Q 024766 178 LLEVDQIYHLACPASPVHYK-----YNPVKTI---KTNVMGTLNMLGLAKRVG--A-KFLLTSTSEVYG 235 (263)
Q Consensus 178 ~~~iD~Vi~~Ag~~~~~~~~-----~~~~~~~---~~Nv~gt~~ll~~a~~~~--~-~iV~vSS~~vyg 235 (263)
+..+|++|||+|........ ....... .++..+...+...+.+.. . .|+++|+.+..+
T Consensus 81 ~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~ 149 (274)
T d2pd4a1 81 LGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTK 149 (274)
T ss_dssp TSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTS
T ss_pred cCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeeccccccc
Confidence 45699999999965432211 2222222 233333444444443332 2 466666665554
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.36 E-value=7.1e-13 Score=113.61 Aligned_cols=110 Identities=20% Similarity=0.298 Sum_probs=82.7
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhh---hhhcCCCceEEEEcccccc-----ccCCCcEEEEc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL---VHHFRNPRFELIRHDVVEP-----ILLEVDQIYHL 187 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~---~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~~ 187 (263)
.++|||||||||||++|+++|+++|++|+++.|+........ ...+....++++.+|+.+. .+.+.+.++++
T Consensus 3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~ 82 (312)
T d1qyda_ 3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA 82 (312)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhh
Confidence 457999999999999999999999999999999755433221 1122456789999999875 45679999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceecC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYGD 236 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg~ 236 (263)
++.... ..|..++.++++++++.+. ++++.||.++++.
T Consensus 83 ~~~~~~-----------~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~ 121 (312)
T d1qyda_ 83 LAGGVL-----------SHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPD 121 (312)
T ss_dssp CCCSSS-----------STTTTTHHHHHHHHHHSCCCSEEECSCCSSCTT
T ss_pred hhhccc-----------ccchhhhhHHHHHHHHhcCCcEEEEeeccccCC
Confidence 864321 1455567788888888875 8888888766653
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.35 E-value=1.1e-12 Score=113.32 Aligned_cols=123 Identities=11% Similarity=0.008 Sum_probs=79.0
Q ss_pred cccCCCCEEEEEcCCC--hHHHHHHHHHHhCCCeEEEEecCCccchhhh---------hhhc-C--C---CceEEEEccc
Q 024766 111 GIGRRRLRIVVTGGAG--FVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL---------VHHF-R--N---PRFELIRHDV 173 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG--~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~---------~~~~-~--~---~~v~~~~~Dv 173 (263)
..+++||+++||||+| +||++++++|+++|++|++.+|+........ .... . . .++..+..++
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVF 82 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTC
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhc
Confidence 3468999999999887 9999999999999999999987532211000 0000 0 0 1122222211
Q ss_pred cc------------------------------cccCCCcEEEEccCCCCC--CCC----CCCHHHHHHHHHHHHHHHHHH
Q 024766 174 VE------------------------------PILLEVDQIYHLACPASP--VHY----KYNPVKTIKTNVMGTLNMLGL 217 (263)
Q Consensus 174 ~~------------------------------~~~~~iD~Vi~~Ag~~~~--~~~----~~~~~~~~~~Nv~gt~~ll~~ 217 (263)
.+ ..+..+|++|||||.... ..+ .+++...+++|+.++.+++++
T Consensus 83 ~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~ 162 (297)
T d1d7oa_ 83 DNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSH 162 (297)
T ss_dssp CSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhH
Confidence 10 124579999999996432 122 224678899999999999998
Q ss_pred HHHcC---CeEEEEcCcce
Q 024766 218 AKRVG---AKFLLTSTSEV 233 (263)
Q Consensus 218 a~~~~---~~iV~vSS~~v 233 (263)
+.... ..++.+++.+.
T Consensus 163 ~~~~~~~~g~~~~~~~~~~ 181 (297)
T d1d7oa_ 163 FLPIMNPGGASISLTYIAS 181 (297)
T ss_dssp HGGGEEEEEEEEEEECGGG
T ss_pred HHHHhhcCCcceeeeehhh
Confidence 86553 25666666543
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.33 E-value=1.5e-12 Score=110.76 Aligned_cols=119 Identities=12% Similarity=0.058 Sum_probs=83.6
Q ss_pred cCCCCEEEEEcCC--ChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc-------------
Q 024766 113 GRRRLRIVVTGGA--GFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------------- 177 (263)
Q Consensus 113 ~~~~k~vlVTGat--G~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------------- 177 (263)
.++||+++||||+ .+||.+++++|+++|++|++++|+..+..+.+.+.. ..+...+.+|++++.
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~-~~~~~~~~~dv~~~~~~~~~~~~v~~~~ 81 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRL-PAKAPLLELDVQNEEHLASLAGRVTEAI 81 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTS-SSCCCEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHc-CCceeeEeeecccccccccccchhhhcc
Confidence 4789999999964 579999999999999999999987666555555543 455678889998751
Q ss_pred --cCCCcEEEEccCCCCCCC-----CCC----CHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcCcc
Q 024766 178 --LLEVDQIYHLACPASPVH-----YKY----NPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTSTSE 232 (263)
Q Consensus 178 --~~~iD~Vi~~Ag~~~~~~-----~~~----~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS~~ 232 (263)
...+|+++||||...... +.+ .+...+.+|+.+.....+.+..... .+++++|..
T Consensus 82 ~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~ 149 (268)
T d2h7ma1 82 GAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFD 149 (268)
T ss_dssp CTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred ccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccccccccccccc
Confidence 235899999999643211 111 2445578888888877777765432 444444443
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.32 E-value=6.1e-12 Score=110.74 Aligned_cols=107 Identities=15% Similarity=0.173 Sum_probs=82.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc------ccCCCcEEEEcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP------ILLEVDQIYHLA 188 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~------~~~~iD~Vi~~A 188 (263)
+.|+|+||||||+||++++++|+++|++|+++.|+..+... ........++++.+|+.|. .+.++|.++++.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~--~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~ 79 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA--EELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINT 79 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH--HHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh--hhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeec
Confidence 45799999999999999999999999999999997665332 2222456789999999875 345788888776
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCcceec
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVYG 235 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vyg 235 (263)
.... ..|+..+.+++++|++.+. ++|+.||.....
T Consensus 80 ~~~~------------~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~ 115 (350)
T d1xgka_ 80 TSQA------------GDEIAIGKDLADAAKRAGTIQHYIYSSMPDHS 115 (350)
T ss_dssp CSTT------------SCHHHHHHHHHHHHHHHSCCSEEEEEECCCGG
T ss_pred cccc------------chhhhhhhHHHHHHHHhCCCceEEEeeccccc
Confidence 3211 1466778899999999986 888888865543
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.31 E-value=8.8e-12 Score=105.57 Aligned_cols=117 Identities=19% Similarity=0.188 Sum_probs=78.1
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc---CCCceEEEEcccccc----------------cc
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF---RNPRFELIRHDVVEP----------------IL 178 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~---~~~~v~~~~~Dv~~~----------------~~ 178 (263)
+++||||+++||++++++|+++|++|++++|+.++..+.+.+.+ ..........|+.+. .+
T Consensus 3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (266)
T d1mxha_ 3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRAF 82 (266)
T ss_dssp EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999998766544433322 345566666555321 34
Q ss_pred CCCcEEEEccCCCCCCCCCC---------------CHHHHHHHHHHHHHHHHHHHHHc---------CC-eEEEEcCcce
Q 024766 179 LEVDQIYHLACPASPVHYKY---------------NPVKTIKTNVMGTLNMLGLAKRV---------GA-KFLLTSTSEV 233 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~~---------------~~~~~~~~Nv~gt~~ll~~a~~~---------~~-~iV~vSS~~v 233 (263)
..+|++|||||...+..... .+...+..|+.+...+....... .. .++.+|+...
T Consensus 83 g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (266)
T d1mxha_ 83 GRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAMT 162 (266)
T ss_dssp SCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGGG
T ss_pred CCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhccc
Confidence 57999999999765432211 13345577777766666655332 12 4666666544
Q ss_pred e
Q 024766 234 Y 234 (263)
Q Consensus 234 y 234 (263)
.
T Consensus 163 ~ 163 (266)
T d1mxha_ 163 D 163 (266)
T ss_dssp G
T ss_pred c
Confidence 3
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.30 E-value=3.4e-12 Score=106.65 Aligned_cols=109 Identities=22% Similarity=0.210 Sum_probs=77.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc-----------ccCCCcEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP-----------ILLEVDQI 184 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~-----------~~~~iD~V 184 (263)
.|+++||||+++||++++++|+++|++|++++|+.+. .+.....+|+.+. .....|.+
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 69 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG-----------EDLIYVEGDVTREEDVRRAVARAQEEAPLFAV 69 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS-----------SSSEEEECCTTCHHHHHHHHHHHHHHSCEEEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc-----------ccceEeeccccchhhhHHHHHhhhccccccch
Confidence 3799999999999999999999999999999987543 2344566776554 12345666
Q ss_pred EEccCCCCCCC--------CCCCHHHHHHHHHHHHHHHHHHHHHc----------CC-eEEEEcCcceec
Q 024766 185 YHLACPASPVH--------YKYNPVKTIKTNVMGTLNMLGLAKRV----------GA-KFLLTSTSEVYG 235 (263)
Q Consensus 185 i~~Ag~~~~~~--------~~~~~~~~~~~Nv~gt~~ll~~a~~~----------~~-~iV~vSS~~vyg 235 (263)
+++++...... ..+.+++.+++|+.+..++++.+... +. +||++||...+-
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~ 139 (241)
T d1uaya_ 70 VSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFE 139 (241)
T ss_dssp EECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHH
T ss_pred hhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhcc
Confidence 66665432211 11235678899999999888775322 22 899999986653
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.22 E-value=1.5e-11 Score=108.21 Aligned_cols=120 Identities=8% Similarity=0.010 Sum_probs=80.3
Q ss_pred CCCEEEEEc--CCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhh--------hc-----CCCceEEEEccc------
Q 024766 115 RRLRIVVTG--GAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVH--------HF-----RNPRFELIRHDV------ 173 (263)
Q Consensus 115 ~~k~vlVTG--atG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~--------~~-----~~~~v~~~~~Dv------ 173 (263)
++|.+|||| ++.+||.++++.|+++|++|++.++........... .. .........+|+
T Consensus 1 n~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (329)
T d1uh5a_ 1 NEDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAN 80 (329)
T ss_dssp CCCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGG
T ss_pred CCcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhc
Confidence 368999999 557999999999999999999988754322111100 00 011222333332
Q ss_pred --------------ccc------------ccCCCcEEEEccCCCCCC--CC----CCCHHHHHHHHHHHHHHHHHHHHHc
Q 024766 174 --------------VEP------------ILLEVDQIYHLACPASPV--HY----KYNPVKTIKTNVMGTLNMLGLAKRV 221 (263)
Q Consensus 174 --------------~~~------------~~~~iD~Vi~~Ag~~~~~--~~----~~~~~~~~~~Nv~gt~~ll~~a~~~ 221 (263)
.+. .+.++|++|||||..... .+ .+++...+++|+.++.++++.+.+.
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~ 160 (329)
T d1uh5a_ 81 DIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNI 160 (329)
T ss_dssp GCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGG
T ss_pred ccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhh
Confidence 221 346799999999865432 22 2357788999999999999988665
Q ss_pred C---CeEEEEcCccee
Q 024766 222 G---AKFLLTSTSEVY 234 (263)
Q Consensus 222 ~---~~iV~vSS~~vy 234 (263)
- .+||++||.+..
T Consensus 161 m~~~GsIv~iss~~~~ 176 (329)
T d1uh5a_ 161 MKPQSSIISLTYHASQ 176 (329)
T ss_dssp EEEEEEEEEEECGGGT
T ss_pred cccccccccceeehhc
Confidence 2 389999887654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.22 E-value=8.6e-12 Score=105.78 Aligned_cols=104 Identities=18% Similarity=0.333 Sum_probs=77.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhh----hhhcCCCceEEEEcccccc-----ccCCCcEEEE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL----VHHFRNPRFELIRHDVVEP-----ILLEVDQIYH 186 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~----~~~~~~~~v~~~~~Dv~~~-----~~~~iD~Vi~ 186 (263)
.|+|||||||||||++++++|+++|++|++++|......... ........++++.+|+.+. .+.+.|.++|
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~ 82 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 82 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeee
Confidence 578999999999999999999999999999999765532211 1112356788899998776 3457999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcCccee
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLTSTSEVY 234 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~vSS~~vy 234 (263)
+++. .++.++.+++++++..+. ++++.|+.+.+
T Consensus 83 ~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~~s~~~~~ 116 (307)
T d1qyca_ 83 TVGS---------------LQIESQVNIIKAIKEVGTVKRFFPSEFGND 116 (307)
T ss_dssp CCCG---------------GGSGGGHHHHHHHHHHCCCSEEECSCCSSC
T ss_pred cccc---------------cccchhhHHHHHHHHhccccceeeeccccc
Confidence 9853 233455677888888776 77777775443
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.03 E-value=1.6e-10 Score=97.21 Aligned_cols=109 Identities=16% Similarity=0.065 Sum_probs=72.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCCCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 195 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~~ 195 (263)
||+|+||||+++||++++++|+++|++|++++|+..+....+.... .......|+..+....+|+++||||+..
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~~~d~~~~~---~~~~~~~~~~~~~~~~id~lv~~Ag~~~--- 74 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAE---GRKQAIADVLAKCSKGMDGLVLCAGLGP--- 74 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEECCTTSHH---HHHHHHHHHHTTCTTCCSEEEECCCCCT---
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHhcCHH---HHHHHHHHHHHHhCCCCcEEEEcCCCCC---
Confidence 6899999999999999999999999999999987544322221110 0011112233334456999999997643
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH----HcCC-eEEEEcC
Q 024766 196 YKYNPVKTIKTNVMGTLNMLGLAK----RVGA-KFLLTST 230 (263)
Q Consensus 196 ~~~~~~~~~~~Nv~gt~~ll~~a~----~~~~-~iV~vSS 230 (263)
....+.....+|..+...+.+... +... ...++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (257)
T d1fjha_ 75 QTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISS 114 (257)
T ss_dssp TCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeee
Confidence 344567788899999888777643 2222 4555554
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.23 E-value=5.2e-06 Score=63.69 Aligned_cols=109 Identities=13% Similarity=0.050 Sum_probs=74.7
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCC---CceE-EEEccccccccCCCcEEEEccCCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRN---PRFE-LIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~---~~v~-~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
+|.|+||+|.+|+.++..|+.+|. ++++++.... +.+..+.... .... .+..+-..+.+.+.|+||..||..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~--~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~ 79 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHT--PGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSH--HHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEecccc--chhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcC
Confidence 789999999999999999999886 7888887532 2222222111 1122 222222234578899999999853
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 192 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 192 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
. ...++-.+.++.|+.....+++.+++++. .++.+|.
T Consensus 80 ~--~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN 118 (144)
T d1mlda1 80 R--KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (144)
T ss_dssp C--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred C--CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 2 22345566789999999999999999875 5555554
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.22 E-value=2.2e-05 Score=60.10 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=75.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccc--h---hhhhhhc--CCCceEE-EEccccccccCCCcEEEE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGR--K---DNLVHHF--RNPRFEL-IRHDVVEPILLEVDQIYH 186 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~--~---~~~~~~~--~~~~v~~-~~~Dv~~~~~~~iD~Vi~ 186 (263)
++|.|+||+|.+|..++..|+.+|. ++.++++..... + ..+.+.. ....... +..+-.-+.+.+.|+||-
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 4799999999999999999999984 899998764321 1 1122211 1222333 222222346778999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEE
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-KFLLT 228 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~iV~v 228 (263)
+||.. .....+-.+.++.|..-...+++..++.+. .++.+
T Consensus 81 tAG~~--~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV 121 (145)
T d1hyea1 81 TSGVP--RKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI 121 (145)
T ss_dssp CCSCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ecccc--cCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence 99853 233345678899999999999999988765 44444
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.20 E-value=8.6e-06 Score=62.64 Aligned_cols=111 Identities=20% Similarity=0.260 Sum_probs=77.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhh-----cCCCceEEEEccccccccCCCcEEEEc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHH-----FRNPRFELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~-----~~~~~v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
.+++|.|+|+ |.+|..++..|+.+|. ++.++|+.++.......++ +....+.....|. +.+.+.|+||.+
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~--~~l~daDvvvit 81 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY--DDCRDADLVVIC 81 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG--GGTTTCSEEEEC
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH--HHhccceeEEEe
Confidence 4568999996 9999999999999875 8999998755433332222 1233444555553 557889999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
||.... ...+-.+.+..|..-...+++..++.+. .++++|.
T Consensus 82 ag~~~~--~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN 124 (148)
T d1ldna1 82 AGANQK--PGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN 124 (148)
T ss_dssp CSCCCC--TTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred cccccc--cCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence 985432 2334456678999999999999888874 5555553
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.19 E-value=6.8e-06 Score=63.15 Aligned_cols=110 Identities=15% Similarity=0.185 Sum_probs=72.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCCccchhhhhhh----cCCCceEEEEccccccccCCCcEEEEcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFFTGRKDNLVHH----FRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~~~~~~~~~~~----~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
+.++|.|.|+ |.+|..++..|+.+| .+++++|+.++..+....++ ...........|. +.+.+.|+||.+|
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~--~~~~~adivvita 80 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY--SDCKDADLVVITA 80 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG--GGGTTCSEEEECC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH--HHhccccEEEEec
Confidence 3568999995 999999999999988 48999998765433222221 1122334455554 3567899999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC-e-EEEEc
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-K-FLLTS 229 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~-~-iV~vS 229 (263)
|.... ...+-.+.+..|+.-...+++..++.+. - ++++|
T Consensus 81 g~~~~--~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 81 GAPQK--PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp CC------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ccccC--CCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 85432 2334456678999999999999998875 3 44444
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.05 E-value=2.8e-05 Score=59.47 Aligned_cols=111 Identities=15% Similarity=0.100 Sum_probs=73.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhC---CCeEEEEecCCccchhhhhhhcC---CCceEEEEccccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDR---GDEVIVIDNFFTGRKDNLVHHFR---NPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~---G~~V~~l~r~~~~~~~~~~~~~~---~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
++|.|+|++|.+|+.++..|+.+ +.++.+++..+ .......+... ......+..+-..+.+.+.|+||.+||.
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~ 79 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence 47999999999999999888643 35899988753 23222222211 1222233222223457789999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
.. ...++-.+.+..|..-...+.+.+.+.+. -++.+|.
T Consensus 80 ~~--k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN 119 (145)
T d2cmda1 80 RR--KPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (145)
T ss_dssp CC--CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred cC--CCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 42 22335566788999999999999988864 4556655
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=98.05 E-value=3e-05 Score=59.86 Aligned_cols=116 Identities=12% Similarity=0.068 Sum_probs=78.4
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhc-----CCCceEEEEccccccccCCCcEEEEc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHF-----RNPRFELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
.+.++|.|+|+ |.+|..++..|+..+. +++++|.+++.......... ..........+..+..+.+.|+|+.+
T Consensus 5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvit 83 (154)
T d1pzga1 5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVT 83 (154)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEEC
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEe
Confidence 35578999996 9999999998888885 89998877655443332221 12233333334445567899999999
Q ss_pred cCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 188 ACPASPVH---YKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 188 Ag~~~~~~---~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
||...... ...+-.+.+..|..-...+++.+++.+. -++.+|.
T Consensus 84 ag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN 131 (154)
T d1pzga1 84 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN 131 (154)
T ss_dssp CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred cccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 98643322 1123456678999999999999988875 3444443
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=98.04 E-value=4e-05 Score=60.45 Aligned_cols=114 Identities=15% Similarity=0.075 Sum_probs=74.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCC---C----eEEEEecCCccc--hhhhhhhc--C-CCceEEEEccccccccCCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRG---D----EVIVIDNFFTGR--KDNLVHHF--R-NPRFELIRHDVVEPILLEVD 182 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G---~----~V~~l~r~~~~~--~~~~~~~~--~-~~~v~~~~~Dv~~~~~~~iD 182 (263)
+..+|.||||+|.||..++..|++.. . ++.+++...... .....+.. . ...-.....+-..+.+.+.|
T Consensus 23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aD 102 (175)
T d7mdha1 23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVD 102 (175)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCc
Confidence 34489999999999999999998752 2 344444432211 11111111 1 12223444555566788999
Q ss_pred EEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEcC
Q 024766 183 QIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTST 230 (263)
Q Consensus 183 ~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--~iV~vSS 230 (263)
+||-.||. +.....+..+.+..|..-...+.+++.+.. . +++.+|.
T Consensus 103 vVvi~ag~--~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N 151 (175)
T d7mdha1 103 WALLIGAK--PRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN 151 (175)
T ss_dssp EEEECCCC--CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred eEEEeecc--CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC
Confidence 99999985 334456778899999999999999998863 2 4555553
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=98.04 E-value=9.1e-05 Score=56.16 Aligned_cols=110 Identities=12% Similarity=0.061 Sum_probs=76.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhc-----CCCceEEEEccccccccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF-----RNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
++|.|+|+ |.+|..++..|+..|. ++.++|++++.......... ......+...+. .+.+.+.|+++.+||
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~-~~~~~dadvvvitag 78 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSND-YADTANSDIVIITAG 78 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESC-GGGGTTCSEEEECCS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCC-HHHhcCCeEEEEEEe
Confidence 47889995 9999999999999974 89999987765443332221 122333433222 346789999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
... ....+-.+.+..|..-...+++..++.+. .++++|-
T Consensus 79 ~~~--~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1guza1 79 LPR--KPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (142)
T ss_dssp CCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred cCC--CCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence 533 23345567789999999999999988765 4444443
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=98.00 E-value=1.4e-05 Score=56.27 Aligned_cols=91 Identities=21% Similarity=0.207 Sum_probs=63.4
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~ 192 (263)
++++|+|+|.|. |..|..+++.|.++|++|++.+.+....... .+ .........+..+..+.++|.||-..|+..
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~d~vi~SPGi~~ 76 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGLD---KL-PEAVERHTGSLNDEWLMAADLIVASPGIAL 76 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTGG---GS-CTTSCEEESBCCHHHHHHCSEEEECTTSCT
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhHH---HH-hhccceeecccchhhhccCCEEEECCCCCC
Confidence 578999999995 8899999999999999999999764432211 11 123334444444555678999999998632
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEE
Q 024766 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFL 226 (263)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV 226 (263)
.+ .+++.|++.++.||
T Consensus 77 -----~~-------------~~~~~a~~~gi~ii 92 (93)
T d2jfga1 77 -----AH-------------PSLSAAADAGIEIV 92 (93)
T ss_dssp -----TS-------------HHHHHHHHTTCEEE
T ss_pred -----CC-------------HHHHHHHHcCCCeE
Confidence 12 36677777776654
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.99 E-value=6.9e-05 Score=57.00 Aligned_cols=109 Identities=18% Similarity=0.147 Sum_probs=72.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcC----CCceEEEEccccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFR----NPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~----~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
++|.|+|+ |.+|..++..|+.++. ++.++|+..+.......+... ........+ ..+.+.+.|+|+..||.
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~--~~~~~~~adivvitag~ 78 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG--DYSDVKDCDVIVVTAGA 78 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----CGGGGTTCSEEEECCCC
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeC--cHHHhCCCceEEEeccc
Confidence 46888896 9999999999999876 899999887665444433321 123333333 34567889999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
.. ....+-.+.+..|..-...+++.+++.+. .++.+|.
T Consensus 79 ~~--~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN 118 (142)
T d1y6ja1 79 NR--KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN 118 (142)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred cc--CcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence 32 23455677889999999999999988865 4555544
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.98 E-value=9.5e-05 Score=56.23 Aligned_cols=109 Identities=16% Similarity=0.039 Sum_probs=75.8
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCcc--chhh---hhhhc-CCCceEEEEccccccccCCCcEEEEccC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTG--RKDN---LVHHF-RNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~--~~~~---~~~~~-~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
+|.|+||+|.||..++..|+.++. ++++++..... .... +.+.. -.........|. +.+.+.|+||..||
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~--~~~~~aDiVvitaG 79 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY--EDTAGSDVVVITAG 79 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG--GGGTTCSEEEECCC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH--HHhhhcCEEEEecc
Confidence 689999999999999999999976 78888853221 1111 12111 133444444443 45678999999998
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 190 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 190 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
... ...++-.+.++.|..-...+.+..++.+. .++.+|.
T Consensus 80 ~~~--~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN 120 (142)
T d1o6za1 80 IPR--QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN 120 (142)
T ss_dssp CCC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred ccc--ccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence 532 23356678899999999999999998874 4555543
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.97 E-value=8.5e-05 Score=56.56 Aligned_cols=109 Identities=19% Similarity=0.202 Sum_probs=75.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhc----CCCceEEEEccccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF----RNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
.+|.|+|+ |.+|..++..|+.+|. +++++++.++..+.+..+.. -.........+..+ .+.+.|+||..||.
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~-~~~daDvVVitaG~ 79 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE-ICRDADMVVITAGP 79 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG-GGTTCSEEEECCCC
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHH-HhhCCcEEEEeccc
Confidence 37889996 9999999999999886 89999987654433322211 01223333333333 47789999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vS 229 (263)
.. ....+-.+.+..|..-...++...++.+. .++.+|
T Consensus 80 ~~--~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 80 RQ--KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp CC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred cc--CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 32 33455678899999999999999988875 344444
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.95 E-value=8.7e-05 Score=56.22 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=75.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhc----CCCceEEEEccccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF----RNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~----~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
++|.|.|+ |.+|..++..|+.++. ++.++|+.++.......+.. -.........| .+.+.+.|+||.+||.
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~--~~~~~~adivvitag~ 77 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD--YADLKGSDVVIVAAGV 77 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC--GGGGTTCSEEEECCCC
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc--HHHhcCCCEEEEeccc
Confidence 47889996 9999999999998875 89999887554433332221 12234444444 3457889999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vS 229 (263)
.. .....-.+.+..|..-...+++..++.+. .++.+|
T Consensus 78 ~~--~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 78 PQ--KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp CC--CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred cc--CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 33 23345667788999999999999988875 444444
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.91 E-value=4.2e-06 Score=65.38 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=34.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhh
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN 156 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~ 156 (263)
|+|.|+||+|.+|++|++.|++.|++|++.+|++++.++.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l 40 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAK 40 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 4788999999999999999999999999999987654433
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.90 E-value=7.6e-05 Score=54.22 Aligned_cols=100 Identities=15% Similarity=0.100 Sum_probs=72.8
Q ss_pred CccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
|...++++|+|+|.| +|-+|..-++.|++.|++|++++..... .........++.....+..+..+.+.+.|+.+.
T Consensus 5 Pi~l~l~~k~vlVvG-~G~va~~ka~~ll~~ga~v~v~~~~~~~---~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at 80 (113)
T d1pjqa1 5 PIFCQLRDRDCLIVG-GGDVAERKARLLLEAGARLTVNALTFIP---QFTVWANEGMLTLVEGPFDETLLDSCWLAIAAT 80 (113)
T ss_dssp EEEECCBTCEEEEEC-CSHHHHHHHHHHHHTTBEEEEEESSCCH---HHHHHHTTTSCEEEESSCCGGGGTTCSEEEECC
T ss_pred ceEEEeCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEEEeccCCh---HHHHHHhcCCceeeccCCCHHHhCCCcEEeecC
Confidence 556678999999999 6999999999999999999998764332 233333556788888888888889999998876
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS 230 (263)
+ +. .+| ..+.+.|++.+ .+|++..
T Consensus 81 ~---------d~----~~n----~~i~~~a~~~~-ilVNv~D 104 (113)
T d1pjqa1 81 D---------DD----TVN----QRVSDAAESRR-IFCNVVD 104 (113)
T ss_dssp S---------CH----HHH----HHHHHHHHHTT-CEEEETT
T ss_pred C---------CH----HHH----HHHHHHHHHcC-CEEEeCC
Confidence 3 11 122 14666777765 5666654
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.84 E-value=6.6e-05 Score=57.78 Aligned_cols=113 Identities=15% Similarity=0.118 Sum_probs=71.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC----eEEEEe-cCCccchhhhh----hh--cCCCce-EEEEccccccccCCCcE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD----EVIVID-NFFTGRKDNLV----HH--FRNPRF-ELIRHDVVEPILLEVDQ 183 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~----~V~~l~-r~~~~~~~~~~----~~--~~~~~v-~~~~~Dv~~~~~~~iD~ 183 (263)
.++|.|+||+|+||+.++..|+..+. ..+.+. .......+... +. ...... .....+-..+.+.+.|+
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adv 83 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADY 83 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccE
Confidence 45899999999999999999998753 112111 11111111111 11 111222 33333444567889999
Q ss_pred EEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcC-C--eEEEEcC
Q 024766 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVG-A--KFLLTST 230 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~-~--~iV~vSS 230 (263)
||-+||.. .....+-.+.+..|+.-...+.+...+.. . .++.+|.
T Consensus 84 ViitaG~~--~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN 131 (154)
T d1y7ta1 84 ALLVGAAP--RKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN 131 (154)
T ss_dssp EEECCCCC--CCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred EEeecCcC--CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC
Confidence 99999853 23345667888999999999999988853 3 4545554
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.83 E-value=0.00017 Score=54.68 Aligned_cols=109 Identities=15% Similarity=0.068 Sum_probs=75.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhc-----CCCceEEEE-ccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF-----RNPRFELIR-HDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~-~Dv~~~~~~~iD~Vi~~A 188 (263)
++|.|+|+ |.+|..++..|+.+|. ++.++|++++.......++. -........ .|. +.+.+.|+||-.|
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~--~~~~~adiVvita 77 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY--SLLKGSEIIVVTA 77 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG--GGGTTCSEEEECC
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH--HHhccccEEEEec
Confidence 47889995 9999999999998875 89999976554433322221 112223333 342 4788999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
|... ....+-.+.+..|..-...+.+..++.+. .++.+|.
T Consensus 78 g~~~--~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1ojua1 78 GLAR--KPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (142)
T ss_dssp CCCC--CSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred cccC--CCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence 8533 33446678889999999999999988875 4444444
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.83 E-value=0.00012 Score=56.80 Aligned_cols=111 Identities=13% Similarity=0.079 Sum_probs=77.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhc-----CCCceEEEEccccccccCCCcEEEEc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF-----RNPRFELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
..++|.|+|+ |.+|..++..|+.+|. +++++|++++....+..++. ..........| -+.+.+.|+||..
T Consensus 19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d--~~~~~~adiVVit 95 (160)
T d1i0za1 19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD--YSVTANSKIVVVT 95 (160)
T ss_dssp CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS--GGGGTTCSEEEEC
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc--hhhcccccEEEEe
Confidence 4458999995 9999999999999987 89999987555443332221 12232223333 3467889999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 188 ACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 188 Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
||.... ...+-.+.++.|+.-...++...++.+. -++.+|.
T Consensus 96 Ag~~~~--~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN 138 (160)
T d1i0za1 96 AGVRQQ--EGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN 138 (160)
T ss_dssp CSCCCC--TTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred cCCccc--cCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 985432 2344556778999999999999988875 4555554
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.81 E-value=0.00012 Score=55.51 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=69.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcC-----CCceEEEEccccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFR-----NPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~-----~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
++|.|+|+ |.+|..++..|+.++. +++++|..++.......+... .....+...+.. ..+.+.|+||-+||.
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~-~~~~~advvvitag~ 79 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGA 79 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcH-HHhcCCCEEEEeeec
Confidence 58999995 9999999999998876 889998876654433333211 122223222222 246789999999985
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vS 229 (263)
... ...+..+.+..|..-...+++...+.+. .++.+|
T Consensus 80 ~~~--~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 80 PRK--PGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp C-----------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred cCC--cCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 432 2334456678999999999999988775 444444
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.80 E-value=6.2e-05 Score=56.11 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=51.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------cCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------~~~iD~Vi~~A 188 (263)
|+|+|.|+ |.+|+.+++.|.+.|++|++++.+++.... +.+. ....++.+|.+++. ..+.|.++-+.
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~-~~~~---~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKK-ASAE---IDALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHH---CSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhh-hhhh---hhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 58999995 999999999999999999999986553332 2222 25678899998873 34688888765
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.77 E-value=6.1e-05 Score=58.46 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=74.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhc-----CCCceEEEEccccccccCCCcEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF-----RNPRFELIRHDVVEPILLEVDQIYH 186 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~Dv~~~~~~~iD~Vi~ 186 (263)
.+..+|.|+|+ |.+|..++..|+.+|. +++++|++.+.......++. ..........| -..+.+.|+||.
T Consensus 17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d--~~~~~~adivvi 93 (159)
T d2ldxa1 17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD--YNVSANSKLVII 93 (159)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS--GGGGTTEEEEEE
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc--hhhhccccEEEE
Confidence 34457999995 9999999999999976 89999987554433332221 12223333333 345688999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 187 LACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 187 ~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
.||...... .+-.+.++.|..-...++...++.+. .++.+|.
T Consensus 94 tag~~~~~~--~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 94 TAGARMVSG--QTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp CCSCCCCTT--TCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred ecccccCCC--CCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 998543322 23334467899999999888887764 4555554
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.76 E-value=7e-05 Score=57.28 Aligned_cols=97 Identities=14% Similarity=0.136 Sum_probs=59.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC----eEEEEecCCccchhhhhhhcCCCceEEEEccccc-cccCCCcEEEEccCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD----EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE-PILLEVDQIYHLACP 190 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~----~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~-~~~~~iD~Vi~~Ag~ 190 (263)
||+|.|.||||++|+.+++.|+++.. +++.+..+...... ... ..... ...++.+ ..+.++|++|.+++.
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~-~~~--~~~~~--~~~~~~~~~~~~~~DivF~a~~~ 75 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA-PSF--GGTTG--TLQDAFDLEALKALDIIVTCQGG 75 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC-CGG--GTCCC--BCEETTCHHHHHTCSEEEECSCH
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc-ccc--cCCce--eeecccchhhhhcCcEEEEecCc
Confidence 57899999999999999998887632 56655543222111 111 11111 1112222 356789999999841
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 191 ASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 191 ~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
+ -...+...+.+.|++++.++.++.|-
T Consensus 76 --------~----------~s~~~~~~~~~~g~~~~VID~Ss~fR 102 (146)
T d1t4ba1 76 --------D----------YTNEIYPKLRESGWQGYWIDAASSLR 102 (146)
T ss_dssp --------H----------HHHHHHHHHHHTTCCCEEEECSSTTT
T ss_pred --------h----------HHHHhhHHHHhcCCCeecccCCcccc
Confidence 0 12345666777787777777777775
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.74 E-value=0.00016 Score=55.23 Aligned_cols=110 Identities=16% Similarity=0.134 Sum_probs=71.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhc-----CCCceEEEEccccccccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHF-----RNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
|+|.|+| +|.+|..++..|+.+|. +++++|++++....+..++. ..........| .+.+.+.|+||-+||
T Consensus 2 kKI~IIG-aG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d--~~~l~~adiVVitaG 78 (146)
T d1hyha1 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND--WAALADADVVISTLG 78 (146)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC--GGGGTTCSEEEECCS
T ss_pred CeEEEEC-cCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC--HHHhccccEEEEecc
Confidence 6899999 59999999999999874 89998886554333322221 12233444444 245788999999998
Q ss_pred CCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Q 024766 190 PASPVHY--KYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTS 229 (263)
Q Consensus 190 ~~~~~~~--~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vS 229 (263)
....... ..+-.+.++.|..-...+.+..++.+. -++.+|
T Consensus 79 ~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 79 NIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp CGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 5432111 111123467899999999999988875 444444
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.64 E-value=5.9e-05 Score=58.17 Aligned_cols=69 Identities=23% Similarity=0.236 Sum_probs=46.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccc-----cccCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE-----PILLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~-----~~~~~iD~Vi~~A 188 (263)
.|+|+|.|| |.+|+.+++.|.++|++|++++|+.++..+.... .........+..+ ..+...|.++.+.
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~ 75 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG---VQHSTPISLDVNDDAALDAEVAKHDLVISLI 75 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTT---CTTEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhc---ccccccccccccchhhhHhhhhccceeEeec
Confidence 589999985 9999999999999999999999976654433322 1223333333322 2345677777655
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=5.7e-05 Score=58.96 Aligned_cols=76 Identities=17% Similarity=0.138 Sum_probs=52.8
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
...++|+|+|.| +|+.+++++..|.+.|.+|.++.|+.++.++..........+... +..+....+.|+|||+...
T Consensus 14 ~~~~~k~vlIlG-aGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~--~~~~~~~~~~dliIN~Tp~ 89 (170)
T d1nyta1 14 FIRPGLRILLIG-AGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQAL--SMDELEGHEFDLIINATSS 89 (170)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEEC--CSGGGTTCCCSEEEECCSC
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccc--ccccccccccceeeccccc
Confidence 346789999999 699999999999999999888888765444333322222333333 3333445678999999753
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.62 E-value=0.00061 Score=52.03 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=74.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhc-----CCCceEEEEccccccccCCCcEEEEccCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHF-----RNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~-----~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
.+|.|.|+ |.+|..++..|+.++. ++.++|+.++..+....+.. ...+......+ ..+.+.+.|+|+.+||.
T Consensus 4 ~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~-~~~~~~~advvvitag~ 81 (150)
T d1t2da1 4 AKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN-TYDDLAGADVVIVTAGF 81 (150)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC-CGGGGTTCSEEEECCSC
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc-cccccCCCcEEEEeccc
Confidence 47999995 9999999988888775 88888887655443332221 12233333322 23456789999999986
Q ss_pred CCCCC-C--CCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 191 ASPVH-Y--KYNPVKTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 191 ~~~~~-~--~~~~~~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
..... . ..+-...+..|..-...+++.+++.+. .++.+|.
T Consensus 82 ~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtN 126 (150)
T d1t2da1 82 TKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 126 (150)
T ss_dssp SSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred ccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 44322 1 123456688999999999999988875 4555554
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.61 E-value=4.1e-05 Score=59.39 Aligned_cols=73 Identities=22% Similarity=0.352 Sum_probs=53.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
.+++++|+|.|+ |.+|..+++.|.+.|. ++.+..|+.++..+ +...+ .......+-....+.+.|+||++.+-
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~-l~~~~---~~~~~~~~~~~~~l~~~Divi~atss 94 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVE-LARDL---GGEAVRFDELVDHLARSDVVVSATAA 94 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHH-HHHHH---TCEECCGGGHHHHHHTCSEEEECCSS
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHH-HHHhh---hcccccchhHHHHhccCCEEEEecCC
Confidence 468899999996 9999999999999998 57777765443333 22222 23445555555677889999999863
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.59 E-value=0.00018 Score=55.25 Aligned_cols=112 Identities=15% Similarity=0.105 Sum_probs=68.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-------eEEEEecCCccch-hhh-hh--hcCC-CceEEEEccccccccCCCcE
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-------EVIVIDNFFTGRK-DNL-VH--HFRN-PRFELIRHDVVEPILLEVDQ 183 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-------~V~~l~r~~~~~~-~~~-~~--~~~~-~~v~~~~~Dv~~~~~~~iD~ 183 (263)
..+|.|+||+|.||+.++..|+..+. +++.++....... +.+ .+ .... ........+-..+.+.+.|+
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 82 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDV 82 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSE
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceE
Confidence 34899999999999999999986542 3344443221111 111 11 1111 22233334444567889999
Q ss_pred EEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHc-CC--eEEEEc
Q 024766 184 IYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRV-GA--KFLLTS 229 (263)
Q Consensus 184 Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~-~~--~iV~vS 229 (263)
||-.||..... .++-.+.+..|..-...+.+...+. +. .++.+|
T Consensus 83 VVitag~~~~~--g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 83 AILVGSMPRRD--GMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp EEECCSCCCCT--TCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred EEEecccCCCC--CCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 99999854332 2333456789999999999888665 43 344444
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.57 E-value=0.00011 Score=57.48 Aligned_cols=76 Identities=13% Similarity=0.178 Sum_probs=53.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
.+++|+|+|.| +|+.+++++..|.+.+.+|+++.|+.++.+......-....+..+..| +....+.|+|||+....
T Consensus 15 ~~~~k~vlIlG-aGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~--~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 15 LRPNQHVLILG-AGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMD--SIPLQTYDLVINATSAG 90 (171)
T ss_dssp CCTTCEEEEEC-CSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGG--GCCCSCCSEEEECCCC-
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhc--cccccccceeeeccccc
Confidence 46789999999 699999999999998889999998765544333332222344444444 33467899999998643
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=8e-05 Score=57.03 Aligned_cols=70 Identities=17% Similarity=0.133 Sum_probs=46.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceE-EEEccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFE-LIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~-~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
|+|.|.|+ |.+|..++..|++.|++|.+++|................... ....+ ..+....+|+||.+.
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~iii~v 71 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAN-DPDFLATSDLLLVTL 71 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEES-CHHHHHTCSEEEECS
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccc-hhhhhcccceEEEee
Confidence 58999996 999999999999999999999997654332211111111111 11122 123446799999987
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=97.35 E-value=7.2e-05 Score=58.35 Aligned_cols=72 Identities=14% Similarity=0.070 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc--ccCCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--ILLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~--~~~~iD~Vi~~Ag 189 (263)
.+++|+|+||+|.+|...+..+...|++|+++++++++.+ .+.+ ++...+ +...|..+. ...++|+||.+.|
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~-~~~~-lGa~~~-i~~~~~~~~~~~~~g~D~v~d~~G 100 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA-LPLA-LGAEEA-ATYAEVPERAKAWGGLDLVLEVRG 100 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH-HHHH-TTCSEE-EEGGGHHHHHHHTTSEEEEEECSC
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccc-cccc-ccccee-eehhhhhhhhhccccccccccccc
Confidence 5679999999999999999988889999999988655433 2222 222222 111222221 2346999999875
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=0.00035 Score=47.30 Aligned_cols=39 Identities=33% Similarity=0.359 Sum_probs=33.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~ 153 (263)
++.+++|+||+|++|...+..+...|++|+++.+++++.
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~ 69 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTH 69 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGH
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHH
Confidence 456899999999999999998888999999998865543
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.00058 Score=55.59 Aligned_cols=72 Identities=17% Similarity=0.205 Sum_probs=50.6
Q ss_pred cCCCCEEEEEcC----------------CChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccc-
Q 024766 113 GRRRLRIVVTGG----------------AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE- 175 (263)
Q Consensus 113 ~~~~k~vlVTGa----------------tG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~- 175 (263)
+++|++||||+| ||-.|.+|++++..+|++|+++....... ....+..+...-.+
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~--------~p~~~~~~~~~t~~~ 74 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP--------TPPFVKRVDVMTALE 74 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC--------CCTTEEEEECCSHHH
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccC--------cccccccceehhhHH
Confidence 567888888864 79999999999999999999987543211 12344444433222
Q ss_pred ------cccCCCcEEEEccCCCC
Q 024766 176 ------PILLEVDQIYHLACPAS 192 (263)
Q Consensus 176 ------~~~~~iD~Vi~~Ag~~~ 192 (263)
..+.+.|++|++|++..
T Consensus 75 m~~~~~~~~~~~D~~i~aAAvsD 97 (223)
T d1u7za_ 75 MEAAVNASVQQQNIFIGCAAVAD 97 (223)
T ss_dssp HHHHHHHHGGGCSEEEECCBCCS
T ss_pred HHHHHHhhhccceeEeeeechhh
Confidence 24467999999998654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.24 E-value=9.9e-05 Score=57.97 Aligned_cols=73 Identities=15% Similarity=-0.005 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCce-EEEEcccccc-----ccCCCcEEEEcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF-ELIRHDVVEP-----ILLEVDQIYHLA 188 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v-~~~~~Dv~~~-----~~~~iD~Vi~~A 188 (263)
+|.+|+|+||+|++|...+......|++|++++++.++. +.+... ....+ +....|..+. .-.++|+||++.
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~-~~~~~~-Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~v 106 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKI-AYLKQI-GFDAAFNYKTVNSLEEALKKASPDGYDCYFDNV 106 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHT-TCSEEEETTSCSCHHHHHHHHCTTCEEEEEESS
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHH-HHHHhh-hhhhhcccccccHHHHHHHHhhcCCCceeEEec
Confidence 577999999999999999998888999999999764432 222222 22222 1111122222 123599999998
Q ss_pred C
Q 024766 189 C 189 (263)
Q Consensus 189 g 189 (263)
|
T Consensus 107 G 107 (182)
T d1v3va2 107 G 107 (182)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.23 E-value=0.0013 Score=49.73 Aligned_cols=93 Identities=19% Similarity=0.143 Sum_probs=57.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC---eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASP 193 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~ 193 (263)
++|.|.||||++|.++++.|.++++ ++..+..+... .+.+. ...-+....+..+..+.++|++|.+++..
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~-Gk~i~----~~~~~~~~~~~~~~~~~~~d~vf~a~p~~-- 75 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESA-GQRMG----FAESSLRVGDVDSFDFSSVGLAFFAAAAE-- 75 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTT-TCEEE----ETTEEEECEEGGGCCGGGCSEEEECSCHH--
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccC-Cccee----eccccchhccchhhhhccceEEEecCCcc--
Confidence 5799999999999999999987653 66655432211 11111 11123333444555667899999887310
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
....+...+.+.|.++|-.|+..
T Consensus 76 ----------------~s~~~~~~~~~~g~~VID~Ss~f 98 (144)
T d2hjsa1 76 ----------------VSRAHAERARAAGCSVIDLSGAL 98 (144)
T ss_dssp ----------------HHHHHHHHHHHTTCEEEETTCTT
T ss_pred ----------------hhhhhccccccCCceEEeechhh
Confidence 12234555667777887777753
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.16 E-value=0.00053 Score=50.63 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=49.1
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------cCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------~~~iD~Vi~~A 188 (263)
|+++|.| .|-+|+.+++.|.+.|++|++++.+++...+ . .......+.+|.+++. +.++|.+|-..
T Consensus 1 k~~iIiG-~G~~G~~la~~L~~~g~~vvvid~d~~~~~~----~-~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~ 72 (134)
T d2hmva1 1 KQFAVIG-LGRFGGSIVKELHRMGHEVLAVDINEEKVNA----Y-ASYATHAVIANATEENELLSLGIRNFEYVIVAI 72 (134)
T ss_dssp CCEEEEC-CSHHHHHHHHHHHHTTCCCEEEESCHHHHHH----T-TTTCSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCeEEEecCcHHHHHH----H-HHhCCcceeeecccchhhhccCCccccEEEEEc
Confidence 5688887 5999999999999999999999875443322 2 2334567788988763 34688887766
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=97.13 E-value=0.00081 Score=52.58 Aligned_cols=99 Identities=13% Similarity=0.151 Sum_probs=59.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCC-cc----chhhhhhhc-CCCceEEEEccccccccCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF-TG----RKDNLVHHF-RNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~-~~----~~~~~~~~~-~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
|++|.|.||||++|.+|++.|.+... ++..+..+. .. ........+ ..........+..+....++|++|.+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~al 80 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLAT 80 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECS
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeeccc
Confidence 56899999999999999999999743 665553321 11 111111111 222333344444455567899999987
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 189 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 189 g~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
+.. ........+.+.+.++|-.|+..
T Consensus 81 p~~------------------~s~~~~~~~~~~~~~vIDlSadf 106 (179)
T d2g17a1 81 AHE------------------VSHDLAPQFLQAGCVVFDLSGAF 106 (179)
T ss_dssp CHH------------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred cch------------------hHHHHhhhhhhcCceeecccccc
Confidence 310 11124455566677888877753
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.12 E-value=0.00032 Score=53.21 Aligned_cols=43 Identities=21% Similarity=0.275 Sum_probs=37.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchh
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD 155 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~ 155 (263)
...+++|.|.||.|.+|..+++.|.+.|++|.+.+++.....+
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~ 48 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE 48 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc
Confidence 3467899999999999999999999999999999987655443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.10 E-value=0.00049 Score=53.96 Aligned_cols=73 Identities=21% Similarity=0.064 Sum_probs=47.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc----ccCCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP----ILLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~----~~~~iD~Vi~~Ag 189 (263)
++.+|||+||+|++|...++.....|.+|+++.++.++.+ ...+. +...+.-...+..+. .-.++|+||.+.|
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~-~~~~l-Ga~~vi~~~~~~~~~~~~~~~~gvD~vid~vg 107 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD-YLRVL-GAKEVLAREDVMAERIRPLDKQRWAAAVDPVG 107 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHH-HHHHT-TCSEEEECC---------CCSCCEEEEEECST
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHH-HHHhc-ccceeeecchhHHHHHHHhhccCcCEEEEcCC
Confidence 4668999999999999999888889999999988765432 22222 222222111111111 1235999999986
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.00016 Score=56.26 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEE---ccccccc-----cCCCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIR---HDVVEPI-----LLEVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~---~Dv~~~~-----~~~iD~Vi~ 186 (263)
.+.+|+|+||+|.+|...+..+...|++|+++++++++ .+.+.+. +.. ++++ .|..+.. -.++|+++.
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~-~~~~~~~-Ga~--~vi~~~~~~~~~~i~~~t~~~g~d~v~d 103 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEG-QKIVLQN-GAH--EVFNHREVNYIDKIKKYVGEKGIDIIIE 103 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHH-HHHHHHT-TCS--EEEETTSTTHHHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccccc-ccccccc-Ccc--cccccccccHHHHhhhhhccCCceEEee
Confidence 56799999999999999999888899999999876433 2333322 222 2222 2222221 134899999
Q ss_pred ccC
Q 024766 187 LAC 189 (263)
Q Consensus 187 ~Ag 189 (263)
+.|
T Consensus 104 ~~g 106 (174)
T d1yb5a2 104 MLA 106 (174)
T ss_dssp SCH
T ss_pred ccc
Confidence 884
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=97.07 E-value=0.00037 Score=54.18 Aligned_cols=72 Identities=22% Similarity=0.223 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccccc-----CCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL-----LEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~-----~~iD~Vi~~Ag 189 (263)
++.+|||+||+|++|...+......|++|+.+.++.++.+. +.+. ....+ +..-|...+.. .++|+|+.+.|
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~-~~~l-Gad~v-i~~~~~~~~~~~~~~~~gvd~vid~vg 99 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADY-LKQL-GASEV-ISREDVYDGTLKALSKQQWQGAVDPVG 99 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHH-HHHH-TCSEE-EEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHH-HHhh-cccce-EeccchhchhhhcccCCCceEEEecCc
Confidence 34579999999999999998777789999999987665433 2222 22222 22222222211 35899999985
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=97.01 E-value=0.0052 Score=42.95 Aligned_cols=71 Identities=17% Similarity=0.108 Sum_probs=49.6
Q ss_pred CCCCEEEEEcCCChHH-HHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 114 RRRLRIVVTGGAGFVG-SHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG-~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
.+.|++.+.|- |++| ++||+.|.++|++|...|+......+.+.+ ..+.+..++..+. ..+.|.||...++
T Consensus 6 ~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~----~Gi~v~~g~~~~~-i~~~d~vV~S~AI 77 (96)
T d1p3da1 6 RRVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQ----AGAKIYIGHAEEH-IEGASVVVVSSAI 77 (96)
T ss_dssp TTCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHH----TTCEEEESCCGGG-GTTCSEEEECTTS
T ss_pred hhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHH----CCCeEEECCcccc-CCCCCEEEECCCc
Confidence 45678999984 5566 778999999999999999864443333332 2445555554443 5789999998865
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.0012 Score=51.73 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=51.1
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhh--hhhc-CCCceEEEEcccccc-----ccCCCc
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNL--VHHF-RNPRFELIRHDVVEP-----ILLEVD 182 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~--~~~~-~~~~v~~~~~Dv~~~-----~~~~iD 182 (263)
..+++|+|+|.| +|+.|++++..|.+.|. +++++.|+.+...... .+.+ ..-.......|+.+. .+.+.|
T Consensus 14 ~~l~~k~vlIlG-aGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 92 (182)
T d1vi2a1 14 FDIKGKTMVLLG-AGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD 92 (182)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred CCcCCCEEEEEC-CcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence 356889999999 59999999999999998 6777787655433211 1111 111223334444332 346789
Q ss_pred EEEEccCC
Q 024766 183 QIYHLACP 190 (263)
Q Consensus 183 ~Vi~~Ag~ 190 (263)
+|||+..+
T Consensus 93 iiIN~Tp~ 100 (182)
T d1vi2a1 93 ILTNGTKV 100 (182)
T ss_dssp EEEECSST
T ss_pred eeccccCC
Confidence 99999754
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=96.95 E-value=0.0015 Score=47.69 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=32.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
..++++|.| +|++|.+++..|.++|.+|.++.+...
T Consensus 29 ~~~~vvIIG-gG~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 29 PQSRLLIVG-GGVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred cCCeEEEEC-cchhHHHHHHHhhcccceEEEEeeccc
Confidence 357899999 699999999999999999999988754
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.0002 Score=55.77 Aligned_cols=73 Identities=15% Similarity=0.097 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCce-EEEEccccccc---c--CCCcEEEEcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRF-ELIRHDVVEPI---L--LEVDQIYHLA 188 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v-~~~~~Dv~~~~---~--~~iD~Vi~~A 188 (263)
.+.+|+|+||+|++|...+......|++|+++++++++.+. +.+. +...+ +.-..|+.+.. . ..+|+|+.+.
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~-~~~l-Ga~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~ 105 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQS-ALKA-GAWQVINYREEDLVERLKEITGGKKVRVVYDSV 105 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHH-HHHH-TCSEEEETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHH-HHhc-CCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCc
Confidence 35699999999999999999888899999999987655432 2222 32221 11122333321 1 2489999998
Q ss_pred C
Q 024766 189 C 189 (263)
Q Consensus 189 g 189 (263)
|
T Consensus 106 g 106 (179)
T d1qora2 106 G 106 (179)
T ss_dssp C
T ss_pred c
Confidence 6
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.91 E-value=0.00026 Score=55.13 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEE---ccccccc---c--CCCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIR---HDVVEPI---L--LEVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~---~Dv~~~~---~--~~iD~Vi~ 186 (263)
++.+|+|+||+|.+|...+..+...|.+|++++++.++ .+.+.+. +... .+. .|+.+.. . .++|++|.
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~-~~~l~~~-Ga~~--vi~~~~~~~~~~v~~~t~~~g~d~v~d 100 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAK-REMLSRL-GVEY--VGDSRSVDFADEILELTDGYGVDVVLN 100 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHH-HHHHHTT-CCSE--EEETTCSTHHHHHHHHTTTCCEEEEEE
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeeccccc-ccccccc-cccc--cccCCccCHHHHHHHHhCCCCEEEEEe
Confidence 46799999999999999999888899999999876443 2333322 2222 222 1222221 1 35999999
Q ss_pred ccC
Q 024766 187 LAC 189 (263)
Q Consensus 187 ~Ag 189 (263)
+.|
T Consensus 101 ~~g 103 (183)
T d1pqwa_ 101 SLA 103 (183)
T ss_dssp CCC
T ss_pred ccc
Confidence 996
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.87 E-value=0.00069 Score=52.79 Aligned_cols=76 Identities=16% Similarity=0.094 Sum_probs=50.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh---cCCCceEEEEccccccccCCCcEEEEccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.+++|+|+|.| +|+.+++++..|.+.| +|.++.|+.++.++..... ........+..+..+......|++||+..
T Consensus 15 ~~~~k~vlIlG-aGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp 92 (177)
T d1nvta1 15 RVKDKNIVIYG-AGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP 92 (177)
T ss_dssp CCCSCEEEEEC-CSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred CcCCCEEEEEC-CcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCc
Confidence 46889999999 6899999999998877 8998888755543332221 11221222233333445567899999865
Q ss_pred C
Q 024766 190 P 190 (263)
Q Consensus 190 ~ 190 (263)
.
T Consensus 93 ~ 93 (177)
T d1nvta1 93 I 93 (177)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.82 E-value=0.0017 Score=49.79 Aligned_cols=68 Identities=12% Similarity=0.096 Sum_probs=45.6
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
||+|+|.| .|.+|..+++.|.+.|+ +|++.+++.+..+.... ...++....+..+....+.|+||-+.
T Consensus 1 Mk~I~IIG-~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~dlIila~ 70 (171)
T d2g5ca2 1 MQNVLIVG-VGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD----LGIIDEGTTSIAKVEDFSPDFVMLSS 70 (171)
T ss_dssp CCEEEEES-CSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH----TTSCSEEESCGGGGGGTCCSEEEECS
T ss_pred CCEEEEEc-cCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH----hhcchhhhhhhhhhhccccccccccC
Confidence 57899998 79999999999999996 67888876443322211 22233333444444445788888777
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.81 E-value=0.00024 Score=55.98 Aligned_cols=74 Identities=19% Similarity=-0.032 Sum_probs=43.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEE-Ecccccc----ccCCCcEEEEccC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELI-RHDVVEP----ILLEVDQIYHLAC 189 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~-~~Dv~~~----~~~~iD~Vi~~Ag 189 (263)
+++|+|+||+|++|...++.....|.++++.....++....+........+.-. ..|..+. .-.++|+||.+.|
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG 109 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG 109 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence 368999999999999988887778987655443333333333332222221111 1122211 1235999999986
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.78 E-value=0.00062 Score=52.51 Aligned_cols=72 Identities=21% Similarity=0.106 Sum_probs=48.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEc----cccccccCCCcEEEEccCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRH----DVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~----Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
.+.+|+|.|+ |.+|...+..+...|++|+++++++++.+ ...+. +... ++.. |..+.....+|.++.+.+.
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~-~a~~l-Ga~~--~i~~~~~~~~~~~~~~~~d~vi~~~~~ 101 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKRE-DAMKM-GADH--YIATLEEGDWGEKYFDTFDLIVVCASS 101 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHH-HHHHH-TCSE--EEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHH-Hhhcc-CCcE--EeeccchHHHHHhhhcccceEEEEecC
Confidence 4679999985 99999988877788999999998766443 33322 3222 2221 2222344568999998764
Q ss_pred C
Q 024766 191 A 191 (263)
Q Consensus 191 ~ 191 (263)
.
T Consensus 102 ~ 102 (168)
T d1piwa2 102 L 102 (168)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.00091 Score=52.35 Aligned_cols=38 Identities=34% Similarity=0.356 Sum_probs=32.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~ 153 (263)
+.+|+|+||+|++|...++.....|++|+++.++.++.
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~ 69 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTH 69 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGH
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHH
Confidence 34899999999999998888888999999999876654
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.69 E-value=0.0053 Score=48.52 Aligned_cols=34 Identities=41% Similarity=0.562 Sum_probs=30.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
|+|.|.| .|++|..++..|++.|++|+++|.+.+
T Consensus 1 MkI~ViG-lG~vGl~~a~~la~~g~~V~g~D~n~~ 34 (202)
T d1mv8a2 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSST 34 (202)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEEC-CCHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence 4788997 899999999999999999999997543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.68 E-value=0.00093 Score=51.38 Aligned_cols=71 Identities=14% Similarity=0.111 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcc---ccccccCCCcEEEEccCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHD---VVEPILLEVDQIYHLACP 190 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D---v~~~~~~~iD~Vi~~Ag~ 190 (263)
.|.+|+|.|+ |.||...+..+...|+++++++++.++. +...+. +... ++..+ .......++|++|.+.|.
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~-~~a~~l-Gad~--~i~~~~~~~~~~~~~~~D~vid~~g~ 103 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAKAL-GADE--VVNSRNADEMAAHLKSFDFILNTVAA 103 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHH-TCSE--EEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHH-HHHhcc-CCcE--EEECchhhHHHHhcCCCceeeeeeec
Confidence 4679999985 9999999888888999999988766543 333322 3222 22222 122234569999999873
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.62 E-value=0.0028 Score=47.77 Aligned_cols=69 Identities=20% Similarity=0.281 Sum_probs=53.2
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------cCCCcEEEEcc
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHLA 188 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------~~~iD~Vi~~A 188 (263)
+++|.| .|-+|..++++|.++|.+|++++..++...+...+. ....+.++.+|.+++. +.+.|.||-+.
T Consensus 5 HiII~G-~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~-~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~ 79 (153)
T d1id1a_ 5 HFIVCG-HSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR-LGDNADVIPGDSNDSSVLKKAGIDRCRAILALS 79 (153)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHH-HCTTCEEEESCTTSHHHHHHHTTTTCSEEEECS
T ss_pred EEEEEC-CCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHh-hcCCcEEEEccCcchHHHHHhccccCCEEEEcc
Confidence 588888 599999999999999999999987655433333333 3457889999998873 35689998877
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.62 E-value=0.0054 Score=46.38 Aligned_cols=97 Identities=14% Similarity=0.162 Sum_probs=52.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCC----CeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRG----DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G----~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~ 192 (263)
++|.|.||||++|++|++.|++.. .++..+..+... ...... ..... .+........+.++|++|.|+..
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~--gk~~~~-~~~~~-~~~~~~~~~~~~~~DvvF~alp~-- 74 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIG--VPAPNF-GKDAG-MLHDAFDIESLKQLDAVITCQGG-- 74 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCS--SBCCCS-SSCCC-BCEETTCHHHHTTCSEEEECSCH--
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEecccccc--cccccc-CCcce-eeecccchhhhccccEEEEecCc--
Confidence 479999999999999999988753 255544432211 111111 11111 11111122345789999998831
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceec
Q 024766 193 PVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYG 235 (263)
Q Consensus 193 ~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg 235 (263)
.+ +..+...+.+.|.+.+.|+-++.|-
T Consensus 75 --------------~~--s~~~~~~l~~~g~~~~VIDlSsdfR 101 (147)
T d1mb4a1 75 --------------SY--TEKVYPALRQAGWKGYWIDAASTLR 101 (147)
T ss_dssp --------------HH--HHHHHHHHHHTTCCSEEEESSSTTT
T ss_pred --------------hH--HHHHhHHHHHcCCceEEEeCCcccc
Confidence 00 2245566667776644444444443
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.61 E-value=0.0024 Score=48.69 Aligned_cols=65 Identities=20% Similarity=0.339 Sum_probs=42.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
|+|.|.| .|.+|..+++.|.+.|++|++.+|+.+..+...... .++....++ +.+.+.|+||-+.
T Consensus 1 MkI~iIG-~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~----~~~~~~~~~--~~~~~~DiIilav 65 (165)
T d2f1ka2 1 MKIGVVG-LGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ----LVDEAGQDL--SLLQTAKIIFLCT 65 (165)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT----SCSEEESCG--GGGTTCSEEEECS
T ss_pred CEEEEEe-ecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhh----ccceeeeec--ccccccccccccC
Confidence 4788888 699999999999999999999998754433222111 111111111 2456789888655
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.59 E-value=0.0025 Score=49.12 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
++|+|+|.| +|+.|++++..|.+.|. +|.++.|+.++. +.+...+.. ..+ ......+.|+|||+..+
T Consensus 16 ~~~~vlIlG-aGGaarai~~aL~~~g~~~I~I~nR~~~ka-~~L~~~~~~---~~~----~~~~~~~~DliINaTpi 83 (167)
T d1npya1 16 KNAKVIVHG-SGGMAKAVVAAFKNSGFEKLKIYARNVKTG-QYLAALYGY---AYI----NSLENQQADILVNVTSI 83 (167)
T ss_dssp TTSCEEEEC-SSTTHHHHHHHHHHTTCCCEEEECSCHHHH-HHHHHHHTC---EEE----SCCTTCCCSEEEECSST
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEecccHHHH-HHHHHhhhh---hhh----hcccccchhhheecccc
Confidence 457899999 59999999999999997 788887765433 333333221 111 11223468999998654
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.55 E-value=0.015 Score=43.89 Aligned_cols=93 Identities=14% Similarity=0.179 Sum_probs=54.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC---eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD---EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASP 193 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~---~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~ 193 (263)
-+|.|.||||++|.+|++.|.+... ++..+..+ +...+.. ....-.....+..+..+.+.|+++-+++..
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~-~s~G~~~----~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~-- 74 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASA-RSAGKSL----KFKDQDITIEETTETAFEGVDIALFSAGSS-- 74 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECG-GGTTCEE----EETTEEEEEEECCTTTTTTCSEEEECSCHH--
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccc-ccccccc----cccCCcccccccchhhhhhhhhhhhccCcc--
Confidence 3799999999999999998888854 33333211 1111111 111122333445556677889988887410
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
.+......+.+.+.+||=.|+..
T Consensus 75 ----------------~s~~~~~~~~~~~~~VIDlSsdf 97 (154)
T d2gz1a1 75 ----------------TSAKYAPYAVKAGVVVVDNTSYF 97 (154)
T ss_dssp ----------------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred ----------------chhhHHhhhccccceehhcChhh
Confidence 12234455556677887777763
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.49 E-value=0.0018 Score=49.58 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=32.5
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~ 153 (263)
|++|-+.| .|-+|..+++.|++.|++|.+.+|+..+.
T Consensus 1 M~kIg~IG-lG~MG~~iA~~L~~~g~~v~~~d~~~~~~ 37 (162)
T d3cuma2 1 MKQIAFIG-LGHMGAPMATNLLKAGYLLNVFDLVQSAV 37 (162)
T ss_dssp CCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSSHHHH
T ss_pred CCEEEEEE-EHHHHHHHHHHHHHCCCeEEEEECchhhh
Confidence 56899998 89999999999999999999999875543
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.45 E-value=0.0037 Score=49.79 Aligned_cols=69 Identities=17% Similarity=0.207 Sum_probs=46.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.++||+|.|-| -|-+|.++++.|.+.|.+|++.+.+......... ...+.+ +..+-...++|+++-||.
T Consensus 24 ~L~gk~v~IqG-~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~-----~g~~~~--~~~~~~~~~~DI~iPcA~ 92 (201)
T d1c1da1 24 SLDGLTVLVQG-LGAVGGSLASLAAEAGAQLLVADTDTERVAHAVA-----LGHTAV--ALEDVLSTPCDVFAPCAM 92 (201)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----TTCEEC--CGGGGGGCCCSEEEECSC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHh-----hccccc--Cccccccccceeeecccc
Confidence 58899999998 8999999999999999999988764332221111 111111 222233456788887764
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.006 Score=47.00 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=36.6
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~ 153 (263)
...+.||+|+|.|.+.-+|+.|+..|.++|+.|+++.......
T Consensus 32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l 74 (166)
T d1b0aa1 32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNL 74 (166)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCH
T ss_pred CcccccceEEEEeccccccHHHHHHHHHhhccccccccccchh
Confidence 3457899999999999999999999999999999887554433
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.39 E-value=0.0031 Score=45.82 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=31.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.++++|.| +|++|.+++..|.+.|.+|.++.+.+.
T Consensus 32 ~~~vvIiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~~ 66 (122)
T d1xhca2 32 SGEAIIIG-GGFIGLELAGNLAEAGYHVKLIHRGAM 66 (122)
T ss_dssp HSEEEEEE-CSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred CCcEEEEC-CcHHHHHHHHHhhcccceEEEEecccc
Confidence 46899999 699999999999999999999988644
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0033 Score=51.24 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=31.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF 149 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~ 149 (263)
.++.++|+|.| .|++|.+++..|+..|. +++++|..
T Consensus 27 kL~~~~VliiG-~GglGs~va~~La~~Gvg~i~lvD~D 63 (247)
T d1jw9b_ 27 ALKDSRVLIVG-LGGLGCAASQYLASAGVGNLTLLDFD 63 (247)
T ss_dssp HHHHCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred HHhCCCEEEEC-CCHHHHHHHHHHHHcCCCeEEEECCc
Confidence 46778999999 79999999999999999 78888744
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0047 Score=47.48 Aligned_cols=42 Identities=24% Similarity=0.131 Sum_probs=36.6
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK 154 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~ 154 (263)
..+.||+++|.| .|.||+.+++.|...|.+|++.+..+....
T Consensus 20 ~~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp~~al 61 (163)
T d1li4a1 20 VMIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDPINAL 61 (163)
T ss_dssp CCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred ceecCCEEEEec-cccccHHHHHHHHhCCCeeEeeecccchhH
Confidence 357899999999 999999999999999999999988654433
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.19 E-value=0.0079 Score=45.74 Aligned_cols=37 Identities=22% Similarity=0.114 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~ 152 (263)
.+.+|+|+| +|.||...+..+...|++|+++++++++
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r 62 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRR 62 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHH
Confidence 456899997 7999999998888899999999986554
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=96.13 E-value=0.0054 Score=47.33 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=34.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhh
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL 157 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~ 157 (263)
++|-+.| .|-+|..+++.|++.|++|++.+|++++.++..
T Consensus 3 ~nIg~IG-lG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~ 42 (176)
T d2pgda2 3 ADIALIG-LAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL 42 (176)
T ss_dssp BSEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHH
T ss_pred CcEEEEe-EhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHH
Confidence 5788999 799999999999999999999999876655443
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.13 E-value=0.0022 Score=49.29 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=31.7
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~ 152 (263)
|+|.|.| +|.+|..++..|.++|++|.+++|+++.
T Consensus 2 k~iaIiG-aG~~G~~~A~~l~~~G~~V~~~~r~~~~ 36 (184)
T d1bg6a2 2 KTYAVLG-LGNGGHAFAAYLALKGQSVLAWDIDAQR 36 (184)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 7899999 5999999999999999999999986544
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=96.12 E-value=0.0032 Score=49.28 Aligned_cols=42 Identities=12% Similarity=-0.045 Sum_probs=33.2
Q ss_pred CCEEEE-EcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhh
Q 024766 116 RLRIVV-TGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL 157 (263)
Q Consensus 116 ~k~vlV-TGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~ 157 (263)
|.+++| +||+|++|...+......|++|+++.++.+..++..
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~ 71 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVV 71 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHH
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHH
Confidence 456666 689999999999888888999999988766655443
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=96.10 E-value=0.0027 Score=49.55 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=26.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEe
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVID 147 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~ 147 (263)
|.+|.|.||||++|.+|++.|.+... ++..+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~ 33 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLS 33 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEee
Confidence 46899999999999999999988654 665554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=96.09 E-value=0.0024 Score=48.73 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=31.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK 154 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~ 154 (263)
++|-|.| .|-+|..+++.|++.|++|++.+|+.++.+
T Consensus 1 MkIgiIG-lG~MG~~~A~~L~~~G~~V~~~d~~~~~~~ 37 (161)
T d1vpda2 1 MKVGFIG-LGIMGKPMSKNLLKAGYSLVVSDRNPEAIA 37 (161)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CEEEEEe-hhHHHHHHHHHHHHCCCeEEEEeCCcchhH
Confidence 4688888 899999999999999999999998755443
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=96.07 E-value=0.0047 Score=48.26 Aligned_cols=32 Identities=28% Similarity=0.599 Sum_probs=26.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEe
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVID 147 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~ 147 (263)
..+|.|.||||++|.+|++.|.+... ++..+.
T Consensus 5 kikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 5 EVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp CEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred ccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 34799999999999999999998754 655554
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.00 E-value=0.024 Score=41.48 Aligned_cols=73 Identities=18% Similarity=0.288 Sum_probs=49.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVHY 196 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~~~ 196 (263)
++|.|.|++|-.|+.+++.+.++|+++++..-. -....+.++|+||-...+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~-----------------------~~~~~~~~~DVvIDFS~p------ 51 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDV-----------------------NGVEELDSPDVVIDFSSP------ 51 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEET-----------------------TEEEECSCCSEEEECSCG------
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECC-----------------------CcHHHhccCCEEEEecCH------
Confidence 479999999999999999999999877653210 011234568888887722
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcC
Q 024766 197 KYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTST 230 (263)
Q Consensus 197 ~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS 230 (263)
.++...++.|.++++.+|.=+|
T Consensus 52 ------------~~~~~~l~~~~~~~~p~ViGTT 73 (128)
T d1vm6a3 52 ------------EALPKTVDLCKKYRAGLVLGTT 73 (128)
T ss_dssp ------------GGHHHHHHHHHHHTCEEEECCC
T ss_pred ------------HHHHHHHHHHHhcCCCEEEEcC
Confidence 1244677778777777654444
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.97 E-value=0.012 Score=45.50 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=36.6
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~ 152 (263)
...++||+++|.|.+.-+|+.|+..|+++|+.|.++......
T Consensus 34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~ 75 (170)
T d1a4ia1 34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAH 75 (170)
T ss_dssp TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS
T ss_pred CcccccceEEEEecCCccchHHHHHHHhccCceEEEeccccc
Confidence 346899999999999999999999999999999998765433
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.94 E-value=0.0019 Score=50.14 Aligned_cols=38 Identities=26% Similarity=0.206 Sum_probs=31.6
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGR 153 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~ 153 (263)
.|.+|+|+|+ |.||...+..+...|+ +|+++++++++.
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~ 66 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRL 66 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHH
T ss_pred CCCEEEEECC-Cccchhheecccccccccccccccccccc
Confidence 4679999996 9999999998888998 799998865543
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.93 E-value=0.012 Score=45.49 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=36.0
Q ss_pred CccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
+.+.+++||+++|.|.+.-+|+-|+..|+++|+.|..+...
T Consensus 22 ~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~ 62 (171)
T d1edza1 22 PEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVN 62 (171)
T ss_dssp CTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred cccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccc
Confidence 34557899999999999999999999999999999877643
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.93 E-value=0.0067 Score=44.10 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
++|+++|.| +|++|.+++..|.+.|.+|.++.+..
T Consensus 29 ~~k~vvViG-gG~iG~E~A~~l~~~g~~Vtlie~~~ 63 (123)
T d1nhpa2 29 EVNNVVVIG-SGYIGIEAAEAFAKAGKKVTVIDILD 63 (123)
T ss_dssp TCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCEEEEEC-ChHHHHHHHHHhhccceEEEEEEecC
Confidence 467999998 69999999999999999999998764
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.92 E-value=0.033 Score=43.34 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=34.5
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
...+.++++.|.| .|.||+.+++.+...|.+|+..++..
T Consensus 39 ~~~l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d1sc6a1 39 SFEARGKKLGIIG-YGHIGTQLGILAESLGMYVYFYDIEN 77 (188)
T ss_dssp CCCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cccccceEEEEee-cccchhhhhhhcccccceEeeccccc
Confidence 4467899999998 89999999999999999999998753
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=95.87 E-value=0.0081 Score=42.49 Aligned_cols=40 Identities=15% Similarity=-0.012 Sum_probs=33.5
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
...+++|+|+|.| +|--|..++.+|++.+.+|+.+.|+..
T Consensus 27 ~~~f~gK~VlVVG-~g~Sa~dia~~l~~~ak~v~~~~~r~~ 66 (107)
T d2gv8a2 27 PELFVGESVLVVG-GASSANDLVRHLTPVAKHPIYQSLLGG 66 (107)
T ss_dssp GGGGTTCCEEEEC-SSHHHHHHHHHHTTTSCSSEEEECTTC
T ss_pred hhhcCCCeEEEEC-CCCCHHHHHHHHHHhcCEEEEEEecCc
Confidence 3468999999999 689999999999999888777766544
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.83 E-value=0.0078 Score=46.98 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=46.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
.+.+|++.|.| .|-||+.+++.+...|.+|++.++....... . ..+-.++.+.+.|+|+.+.
T Consensus 39 ~l~gk~vgIiG-~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~---------~----~~~~l~ell~~sDiv~~~~ 100 (181)
T d1qp8a1 39 LIQGEKVAVLG-LGEIGTRVGKILAALGAQVRGFSRTPKEGPW---------R----FTNSLEEALREARAAVCAL 100 (181)
T ss_dssp CCTTCEEEEES-CSTHHHHHHHHHHHTTCEEEEECSSCCCSSS---------C----CBSCSHHHHTTCSEEEECC
T ss_pred cccCceEEEec-cccccccceeeeeccccccccccccccccce---------e----eeechhhhhhccchhhccc
Confidence 47899999999 7999999999999999999999876432111 0 0123456677788887665
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=95.81 E-value=0.0096 Score=48.29 Aligned_cols=70 Identities=19% Similarity=0.127 Sum_probs=47.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.+++|+|+|-| -|-+|.++++.|.+.|++|++.+.+........... .... .+..+....++|+++-||-
T Consensus 36 ~l~g~~v~IqG-~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~----g~~~--~~~~~~~~~~cDIl~PcA~ 105 (230)
T d1leha1 36 SLEGLAVSVQG-LGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEE----GADA--VAPNAIYGVTCDIFAPCAL 105 (230)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH----CCEE--CCGGGTTTCCCSEEEECSC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhc----CCcc--cCCcccccccccEeccccc
Confidence 47899999999 899999999999999999999876543332222211 1111 1222333456788888874
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.81 E-value=0.0077 Score=43.16 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=31.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.++++|.| +|+||.+++..|.+.|.+|.++.|...
T Consensus 22 p~~v~IiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIG-GGYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEEC-CCccceeeeeeecccccEEEEEEecce
Confidence 36899999 699999999999999999999987644
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.75 E-value=0.0035 Score=47.88 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=45.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEcc---ccccc-----cCCCcEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHD---VVEPI-----LLEVDQIY 185 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D---v~~~~-----~~~iD~Vi 185 (263)
.+.+|+|.|++|.+|...+..+...|. +|+++++++++. +...+. +.. ..+..+ ..+.. -..+|++|
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~-~~~~~~-Ga~--~~i~~~~~~~~~~~~~~~~~~~~d~vi 102 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV-EAAKRA-GAD--YVINASMQDPLAEIRRITESKGVDAVI 102 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH-HHHHHH-TCS--EEEETTTSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhH-HHHHHc-CCc--eeeccCCcCHHHHHHHHhhcccchhhh
Confidence 456899999999999999998888886 788887654432 222222 221 223222 22221 13489999
Q ss_pred EccC
Q 024766 186 HLAC 189 (263)
Q Consensus 186 ~~Ag 189 (263)
.++|
T Consensus 103 d~~g 106 (170)
T d1jvba2 103 DLNN 106 (170)
T ss_dssp ESCC
T ss_pred cccc
Confidence 9986
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.62 E-value=0.0043 Score=47.80 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=43.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcc---cccc---c-cCCCcEEEEc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHD---VVEP---I-LLEVDQIYHL 187 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~D---v~~~---~-~~~iD~Vi~~ 187 (263)
.+.+|+|.|+ |.||...+..+...|++++++....+.+.+.+.+. ... +++..+ ..+. . -.++|++|.|
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~-Ga~--~~i~~~~~~~~~~i~~~t~gg~D~vid~ 103 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL-GAT--HVINSKTQDPVAAIKEITDGGVNFALES 103 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH-TCS--EEEETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHHHc-CCe--EEEeCCCcCHHHHHHHHcCCCCcEEEEc
Confidence 4668999986 99999999888888986655443333333333332 322 233332 2221 1 1358999999
Q ss_pred cC
Q 024766 188 AC 189 (263)
Q Consensus 188 Ag 189 (263)
.|
T Consensus 104 ~G 105 (174)
T d1f8fa2 104 TG 105 (174)
T ss_dssp SC
T ss_pred CC
Confidence 96
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.61 E-value=0.018 Score=45.41 Aligned_cols=41 Identities=27% Similarity=0.407 Sum_probs=35.8
Q ss_pred ccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.+..+.+|+|.|.| .|.||+.+++.|...|.+|++.++...
T Consensus 37 ~g~el~gk~vgIiG-~G~IG~~va~~l~~fg~~V~~~d~~~~ 77 (197)
T d1j4aa1 37 IGREVRDQVVGVVG-TGHIGQVFMQIMEGFGAKVITYDIFRN 77 (197)
T ss_dssp CBCCGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred cCccccCCeEEEec-ccccchhHHHhHhhhcccccccCcccc
Confidence 34568899999999 899999999999999999999886543
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.61 E-value=0.0051 Score=46.18 Aligned_cols=41 Identities=24% Similarity=0.370 Sum_probs=35.6
Q ss_pred CCccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 108 VPVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 108 ~~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
.|....+++|+++|+|| |.+|..-++.|++.|++|++++-.
T Consensus 5 lpl~~~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 5 LQLAHQLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp EEEEECCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred chhheeeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35556789999999995 999999999999999999999643
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.60 E-value=0.0095 Score=42.91 Aligned_cols=34 Identities=15% Similarity=0.315 Sum_probs=30.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
.++++|.| +|+||.+++..|.+.|.+|.++.|..
T Consensus 22 p~~v~IiG-gG~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVG-SGYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEEC-CchHHHHHHHHHHhccccceeeehhc
Confidence 46899999 69999999999999999999998864
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=95.58 E-value=0.016 Score=45.56 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=35.6
Q ss_pred ccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.+..+.+|++.|.| .|.||+.+++.+...|.+|+..++...
T Consensus 41 ~~~~l~g~tvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~ 81 (191)
T d1gdha1 41 VGEKLDNKTLGIYG-FGSIGQALAKRAQGFDMDIDYFDTHRA 81 (191)
T ss_dssp CBCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred ccceecccceEEee-cccchHHHHHHHHhhcccccccccccc
Confidence 34567899999999 899999999999999999999887544
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=95.57 E-value=0.014 Score=44.92 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=68.0
Q ss_pred CEEEEEcCCChHHHH--HHHHHHhC----CCeEEEEecCCccchhhhh---hhc--CCCceEEEEccccccccCCCcEEE
Q 024766 117 LRIVVTGGAGFVGSH--LVDKLIDR----GDEVIVIDNFFTGRKDNLV---HHF--RNPRFELIRHDVVEPILLEVDQIY 185 (263)
Q Consensus 117 k~vlVTGatG~IG~~--l~~~Ll~~----G~~V~~l~r~~~~~~~~~~---~~~--~~~~v~~~~~Dv~~~~~~~iD~Vi 185 (263)
++|.|.|| |.+|.. ++..|+.. +.+++++|++++..+.... +.. ......+...+-.++.+.+.|+|+
T Consensus 3 mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv 81 (171)
T d1obba1 3 VKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 81 (171)
T ss_dssp CEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred cEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence 58999995 888865 34444433 3599999987655432221 111 244566666666677789999999
Q ss_pred EccCCCCCCCCCCCHHH------------------------HHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 186 HLACPASPVHYKYNPVK------------------------TIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 186 ~~Ag~~~~~~~~~~~~~------------------------~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
++++.......+.+... ...-|+.-...+++..++... .++++|-
T Consensus 82 ~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TN 152 (171)
T d1obba1 82 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAAN 152 (171)
T ss_dssp ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred eecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECC
Confidence 99865321110000000 012477778888888887764 5666654
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.55 E-value=0.0086 Score=44.93 Aligned_cols=64 Identities=19% Similarity=0.155 Sum_probs=44.6
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
++|-|.| .|-+|..+++.|++.|++|++.++.............. + .+..++...+.|+||-+.
T Consensus 1 MkIgiIG-~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~---~----~~~~~e~~~~~diIi~~v 64 (152)
T d1i36a2 1 LRVGFIG-FGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVG---V----TETSEEDVYSCPVVISAV 64 (152)
T ss_dssp CEEEEES-CSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT---C----EECCHHHHHTSSEEEECS
T ss_pred CEEEEEc-HHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhccc---c----cccHHHHHhhcCeEEEEe
Confidence 4688887 79999999999999999999887765544333222211 1 123344566789888876
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.016 Score=52.57 Aligned_cols=115 Identities=13% Similarity=0.139 Sum_probs=71.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccch------------------hh----hhhhcCCCceEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRK------------------DN----LVHHFRNPRFELIR 170 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~------------------~~----~~~~~~~~~v~~~~ 170 (263)
++..+|+|.| .|++|.++++.|+..|. +++++|...-... +. +.+.-...++..+.
T Consensus 23 L~~s~VlvvG-~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~ 101 (529)
T d1yova1 23 LESAHVCLIN-ATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVE 101 (529)
T ss_dssp HHHCEEEECC-CSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEES
T ss_pred HhCCCEEEEC-CCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEc
Confidence 4556899999 58999999999999998 7888765321110 00 11110122444555
Q ss_pred ccccc------cccCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcceecC----CCCC
Q 024766 171 HDVVE------PILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSEVYGD----PLEH 240 (263)
Q Consensus 171 ~Dv~~------~~~~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~vyg~----~~~~ 240 (263)
.+..+ ..+.+.|+||.+.. +. .....+-+.|.+.++.+|.+.+.+.||. -.++
T Consensus 102 ~~~~~~~~~~~~~~~~~dvVv~~~~---------~~--------~~~~~l~~~c~~~~ip~i~~~~~G~~G~v~~~~~~~ 164 (529)
T d1yova1 102 ESPENLLDNDPSFFCRFTVVVATQL---------PE--------STSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEH 164 (529)
T ss_dssp SCHHHHHHSCGGGGGGCSEEEEESC---------CH--------HHHHHHHHHHHHHTCCEEEEEEETTEEEEEEECSCE
T ss_pred CCchhhhhhHHHHhcCCCEEEECCC---------CH--------HHHHHHHHHHHHcCCCEEEEeccCCEEEEEEEeCCc
Confidence 54432 23556899997761 22 2223456777788889999999888873 2334
Q ss_pred CcCCCC
Q 024766 241 PQKETY 246 (263)
Q Consensus 241 ~~~E~~ 246 (263)
++.|+.
T Consensus 165 ~~~e~~ 170 (529)
T d1yova1 165 PVIESH 170 (529)
T ss_dssp EESCCC
T ss_pred eEEecC
Confidence 555553
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=95.52 E-value=0.015 Score=41.88 Aligned_cols=36 Identities=28% Similarity=0.329 Sum_probs=31.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
..++++|.| +|+||.+++..|.+.|.+|.++.+...
T Consensus 21 ~p~~i~IiG-~G~ig~E~A~~l~~~G~~Vtiv~~~~~ 56 (119)
T d3lada2 21 VPGKLGVIG-AGVIGLELGSVWARLGAEVTVLEAMDK 56 (119)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCCeEEEEC-CChHHHHHHHHHHHcCCceEEEEeecc
Confidence 346899999 699999999999999999999987643
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.016 Score=44.16 Aligned_cols=72 Identities=14% Similarity=0.069 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEcccccc--------ccCCCcEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--------ILLEVDQIY 185 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~--------~~~~iD~Vi 185 (263)
.+.+|+|.|+ |.+|...+..+...|+ +|+++++++.+.+ ... .++...+.....+.... .-.++|++|
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~-~a~-~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvi 102 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLS-KAK-EIGADLVLQISKESPQEIARKVEGQLGCKPEVTI 102 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHH-HHH-HTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEE
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHH-HHH-HhCCcccccccccccccccccccccCCCCceEEE
Confidence 3558999985 9999999999988999 7998887654433 222 22322222222111111 113589999
Q ss_pred EccC
Q 024766 186 HLAC 189 (263)
Q Consensus 186 ~~Ag 189 (263)
.+.|
T Consensus 103 d~~G 106 (171)
T d1pl8a2 103 ECTG 106 (171)
T ss_dssp ECSC
T ss_pred eccC
Confidence 9996
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.012 Score=52.12 Aligned_cols=74 Identities=19% Similarity=0.141 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchh----------------------hhhhhcCCCceEEEE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKD----------------------NLVHHFRNPRFELIR 170 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~----------------------~~~~~~~~~~v~~~~ 170 (263)
++..+|+|.| .|++|.++++.|+..|. ++.++|...-.... .+...-...++..+.
T Consensus 35 l~~~kVlvvG-~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~ 113 (426)
T d1yovb1 35 LDTCKVLVIG-AGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHF 113 (426)
T ss_dssp HHHCCEEEEC-SSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEC
T ss_pred HhcCeEEEEC-CCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeee
Confidence 5667899999 58899999999999998 88888754211110 011111233556666
Q ss_pred ccccc---cccCCCcEEEEcc
Q 024766 171 HDVVE---PILLEVDQIYHLA 188 (263)
Q Consensus 171 ~Dv~~---~~~~~iD~Vi~~A 188 (263)
.++.+ ..+.+.|+||.+.
T Consensus 114 ~~i~~~~~~~~~~~DlVi~~~ 134 (426)
T d1yovb1 114 NKIQDFNDTFYRQFHIIVCGL 134 (426)
T ss_dssp SCGGGBCHHHHTTCSEEEECC
T ss_pred ccccchHHHHHHhcchheecc
Confidence 55543 3467899999887
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.49 E-value=0.011 Score=42.92 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=31.1
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.|+++|.| +|+||.+++..|.+.|.+|.++.+...
T Consensus 23 p~~~vIiG-~G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 23 PKRLTIIG-GGIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEEC-CCchHHHHHHHHHhhCcceeEEEeccc
Confidence 36899999 699999999999999999999987643
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=95.42 E-value=0.022 Score=44.46 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=34.6
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
...+.++++.|.| .|.||+++++.|...|.+|+..++..
T Consensus 39 ~~~l~~~~vgiiG-~G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d2naca1 39 AYDLEAMHVGTVA-AGRIGLAVLRRLAPFDVHLHYTDRHR 77 (188)
T ss_dssp CCCCTTCEEEEEC-CSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred ceeccccceeecc-ccccchhhhhhhhccCceEEEEeecc
Confidence 3457899999999 89999999999999999999998754
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.41 E-value=0.012 Score=42.15 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=31.1
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.++++|.| +|++|.+++..|.+.|.+|.++.|...
T Consensus 21 p~~vvIiG-gG~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 21 PERVAVVG-AGYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEEC-CChhhHHHHHHhhccccEEEEEeecch
Confidence 36899999 699999999999999999999988643
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.39 E-value=0.012 Score=42.77 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=31.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.|+++|.| +|+||.+++..|.+.|.+|.++.|...
T Consensus 22 pk~vvIvG-gG~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 22 PGRSVIVG-AGYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEEc-CCccHHHHHHHHhcCCcEEEEEeeccc
Confidence 36899999 699999999999999999999998743
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.37 E-value=0.0056 Score=48.08 Aligned_cols=73 Identities=18% Similarity=0.046 Sum_probs=47.3
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc-----C----CCceEEEEccccccccCCCcE
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF-----R----NPRFELIRHDVVEPILLEVDQ 183 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~-----~----~~~v~~~~~Dv~~~~~~~iD~ 183 (263)
.+.+++|.|.| +|..|.+++..|++.|++|.+.+|+.+..++...... . ..++. .. +..++.+.+.|+
T Consensus 4 ~~~m~KI~ViG-aG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~-~t-~~l~~a~~~ad~ 80 (189)
T d1n1ea2 4 LLYLNKAVVFG-SGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNIT-FT-SDVEKAYNGAEI 80 (189)
T ss_dssp CCCEEEEEEEC-CSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEE-EE-SCHHHHHTTCSC
T ss_pred cceeceEEEEC-CCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccc-cc-hhhhhccCCCCE
Confidence 34567899999 7999999999999999999999886443322111110 0 11222 22 223344667899
Q ss_pred EEEcc
Q 024766 184 IYHLA 188 (263)
Q Consensus 184 Vi~~A 188 (263)
||-+.
T Consensus 81 iiiav 85 (189)
T d1n1ea2 81 ILFVI 85 (189)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 88865
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=95.32 E-value=0.031 Score=43.82 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=36.0
Q ss_pred ccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 110 VGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 110 ~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
....+.||++.|.| .|-||+.+++.|...|.+|+..++...
T Consensus 43 ~~~eL~gktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~ 83 (193)
T d1mx3a1 43 GAARIRGETLGIIG-LGRVGQAVALRAKAFGFNVLFYDPYLS 83 (193)
T ss_dssp TCCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred CceeeeCceEEEec-cccccccceeeeeccccceeeccCccc
Confidence 34568999999999 899999999999999999999987644
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.31 E-value=0.015 Score=41.53 Aligned_cols=35 Identities=26% Similarity=0.364 Sum_probs=30.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
+++++|.| +|++|.+++..|.+.|.+|.++.+.+.
T Consensus 21 p~~vvIiG-gG~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 21 PQHLVVVG-GGYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEEC-CCHHHHHHHHHHhhcccceEEEeeecc
Confidence 35899998 799999999999999999999987643
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.30 E-value=0.014 Score=42.95 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.+++++|.| +|++|.+++..|.+.|.+|.++.+...
T Consensus 34 ~~k~v~VIG-gG~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 34 ADNRLVVIG-GGYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred cCCEEEEEC-CchHHHHHHHHHHhhCcceeeeeeccc
Confidence 457999999 799999999999999999999987644
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.28 E-value=0.0078 Score=47.34 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=32.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~ 153 (263)
-|+|.|.|+ |.+|..++..++..|++|++.+++++..
T Consensus 4 IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l 40 (192)
T d1f0ya2 4 VKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTEDIL 40 (192)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred eEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChHHH
Confidence 478999995 9999999999999999999999886543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.23 E-value=0.018 Score=44.34 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=53.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcC-CCceEEEEccccccccCCCcEEEEccCCCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFR-NPRFELIRHDVVEPILLEVDQIYHLACPAS 192 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~-~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~ 192 (263)
+..+|+|.| .|-.|..-++.....|.+|.++|.+.+..++ +...+. ........-+...+.+.+.|+||.++-+..
T Consensus 31 ~pa~V~ViG-aGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~-l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG 107 (168)
T d1pjca1 31 KPGKVVILG-GGVVGTEAAKMAVGLGAQVQIFDINVERLSY-LETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPG 107 (168)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTT
T ss_pred CCcEEEEEC-CChHHHHHHHHHhhCCCEEEEEeCcHHHHHH-HHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCC
Confidence 456899999 6999999999999999999999987665433 222221 222222222334556778999999996543
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.19 E-value=0.041 Score=41.85 Aligned_cols=71 Identities=15% Similarity=0.017 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccc---c-----ccCCCcEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE---P-----ILLEVDQIY 185 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~---~-----~~~~iD~Vi 185 (263)
.|.+|+|.|+ |++|...+..+...|. +|+++++++++.+ ...+. .... .+...|..+ . .-.++|++|
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~-~a~~~-Ga~~-~i~~~~~~~~~~~~~~~~~~~G~D~vi 103 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFA-KAKEV-GATE-CVNPQDYKKPIQEVLTEMSNGGVDFSF 103 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHH-HHHHT-TCSE-EECGGGCSSCHHHHHHHHTTSCBSEEE
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHH-HHHHh-CCee-EEecCCchhHHHHHHHHHhcCCCCEEE
Confidence 5669999997 7799999999999986 7788777655433 22222 2111 111112111 1 124699999
Q ss_pred EccC
Q 024766 186 HLAC 189 (263)
Q Consensus 186 ~~Ag 189 (263)
.+.|
T Consensus 104 d~~G 107 (176)
T d2jhfa2 104 EVIG 107 (176)
T ss_dssp ECSC
T ss_pred ecCC
Confidence 9996
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.10 E-value=0.15 Score=34.54 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=45.5
Q ss_pred CEEEEEcCCChHHH-HHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCC
Q 024766 117 LRIVVTGGAGFVGS-HLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPA 191 (263)
Q Consensus 117 k~vlVTGatG~IG~-~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~ 191 (263)
++|.++| -|++|. .||+.|.++|++|...|+......+.+... .+.+..+ -....+.++|.||...++.
T Consensus 2 ~~ihfiG-IgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~----Gi~i~~g-h~~~~i~~~d~vV~SsAI~ 71 (89)
T d1j6ua1 2 MKIHFVG-IGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKL----GIPIFVP-HSADNWYDPDLVIKTPAVR 71 (89)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHT----TCCEESS-CCTTSCCCCSEEEECTTCC
T ss_pred cEEEEEe-ECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHC----CCeEEee-ecccccCCCCEEEEecCcC
Confidence 4677888 455664 799999999999999998754444433322 3333333 2222346799999998753
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=95.08 E-value=0.018 Score=41.20 Aligned_cols=36 Identities=11% Similarity=0.042 Sum_probs=31.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.+++++|.| +|+||.+++..|.+.|.+|.++.+.+.
T Consensus 21 ~~~~vvVvG-gG~ig~E~A~~l~~~g~~vt~i~~~~~ 56 (121)
T d1mo9a2 21 PGSTVVVVG-GSKTAVEYGCFFNATGRRTVMLVRTEP 56 (121)
T ss_dssp CCSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcchhheEeeccch
Confidence 367999999 799999999999999999999988643
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=95.00 E-value=0.13 Score=38.88 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=41.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhC-CCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.+|.|.| +|.+|+..++.|.+. +.+++++..+..... ........+-.+....++|+|+.+..
T Consensus 4 irvgiiG-~G~ig~~~~~~l~~~~~~elvav~~~~~~~~---------~~~~~~~~~~~~~~~~~~D~Vvi~tp 67 (170)
T d1f06a1 4 IRVAIVG-YGNLGRSVEKLIAKQPDMDLVGIFSRRATLD---------TKTPVFDVADVDKHADDVDVLFLCMG 67 (170)
T ss_dssp EEEEEEC-CSHHHHHHHHHHTTCSSEEEEEEEESSSCCS---------SSSCEEEGGGGGGTTTTCSEEEECSC
T ss_pred ceEEEEC-ChHHHHHHHHHHHhCCCcEEEEEEecccccc---------cccccccchhhhhhccccceEEEeCC
Confidence 3688988 799999999999886 457766554322211 11223334444455678999998875
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=95.00 E-value=0.031 Score=42.63 Aligned_cols=97 Identities=15% Similarity=0.288 Sum_probs=56.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHhC-CCeEEEE-ecCCccc-hhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDR-GDEVIVI-DNFFTGR-KDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASP 193 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l-~r~~~~~-~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~ 193 (263)
.+|+|.|++|-+|+.+++.+.+. +.++... ++..... .....+............|-.+..+..+|+||-..
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs----- 79 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFT----- 79 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECS-----
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEec-----
Confidence 37999999999999999999887 4455433 3322211 11111211111122222233445667789998876
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCc
Q 024766 194 VHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTS 231 (263)
Q Consensus 194 ~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~ 231 (263)
.+ .++...++.|.+.++.+|.=+|.
T Consensus 80 -----~p--------~~~~~~~~~a~~~~~~~ViGTTG 104 (162)
T d1diha1 80 -----RP--------EGTLNHLAFCRQHGKGMVIGTTG 104 (162)
T ss_dssp -----CH--------HHHHHHHHHHHHTTCEEEECCCC
T ss_pred -----cH--------HHHHHHHHHHHhccceeEEecCC
Confidence 22 23446777888887776665544
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=94.96 E-value=0.03 Score=44.08 Aligned_cols=40 Identities=23% Similarity=0.337 Sum_probs=35.3
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
+..+.+|+|.|.| .|-||+.+++.|...|.+|++.++...
T Consensus 40 ~~~l~~ktvgIiG-~G~IG~~va~~l~~fg~~v~~~d~~~~ 79 (199)
T d1dxya1 40 GKELGQQTVGVMG-TGHIGQVAIKLFKGFGAKVIAYDPYPM 79 (199)
T ss_dssp CCCGGGSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred cccccceeeeeee-cccccccccccccccceeeeccCCccc
Confidence 3467889999999 899999999999999999999987643
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.95 E-value=0.034 Score=42.78 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=46.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc-hhhhhhhcC-------CCceEEEEccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR-KDNLVHHFR-------NPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~-~~~~~~~~~-------~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
|+|.|.| +|-.|.+++..|++.|++|.+..|..+.. -+.+..... .........+..++...+.|+||.+.
T Consensus 1 MkI~ViG-aG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av 79 (180)
T d1txga2 1 MIVSILG-AGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV 79 (180)
T ss_dssp CEEEEES-CCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence 5789999 69999999999999999999988753321 111111100 11223333444556677899998866
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=94.93 E-value=0.017 Score=43.31 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=41.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCC-CeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
++|.+.| +|-+|.++++.|++.| ++|++.+|+.+..++...+. .+... .| .+...+.|+||-+.
T Consensus 1 MkI~fIG-~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~----~~~~~-~~--~~~v~~~Div~lav 65 (152)
T d1yqga2 1 MNVYFLG-GGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL----GVETS-AT--LPELHSDDVLILAV 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT----CCEEE-SS--CCCCCTTSEEEECS
T ss_pred CEEEEEc-CcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc----ccccc-cc--cccccccceEEEec
Confidence 4788888 6999999999999987 79999988765443322221 12221 11 12345578888665
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.92 E-value=0.016 Score=46.28 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=30.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
+|+|+|+| +|.-|...+.+|++.|++|.++.++
T Consensus 1 ~KkV~IIG-aG~aGL~aA~~La~~G~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIG-AGVSGLAAAYKLKIHGLNVTVFEAE 33 (373)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCCEEEEeCC
Confidence 58999999 6999999999999999999999764
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=94.92 E-value=0.018 Score=45.56 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=30.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
.|+|+|.| +|..|..++.+|+++|++|.+++|.
T Consensus 6 ~~kVvVIG-aGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 6 QKRVVVLG-SGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp SCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCcEEEEC-ccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 45899999 6999999999999999999999975
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.91 E-value=0.046 Score=41.35 Aligned_cols=70 Identities=16% Similarity=0.020 Sum_probs=42.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccc----ccc-----ccCCCcEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV----VEP-----ILLEVDQI 184 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv----~~~-----~~~~iD~V 184 (263)
.|.+|+|.|+ |++|...+..+...|. .|++++++++ +.+...+. +... .++.+- ... .-.++|++
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~-k~~~ak~l-Ga~~--~i~~~~~~~~~~~~~~~~~~~g~D~v 102 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKD-KFARAKEF-GATE--CINPQDFSKPIQEVLIEMTDGGVDYS 102 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG-GHHHHHHH-TCSE--EECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHH-HHHHHHHh-CCcE--EEeCCchhhHHHHHHHHHcCCCCcEe
Confidence 4669999996 7899999888888997 4555554433 33333332 3222 222211 111 12459999
Q ss_pred EEccC
Q 024766 185 YHLAC 189 (263)
Q Consensus 185 i~~Ag 189 (263)
|.+.|
T Consensus 103 id~~G 107 (176)
T d2fzwa2 103 FECIG 107 (176)
T ss_dssp EECSC
T ss_pred eecCC
Confidence 99996
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.89 E-value=0.014 Score=42.35 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=31.9
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~ 152 (263)
.++++|.| +|+||.+++..|.+.|.+|.++.|.+.-
T Consensus 25 p~~~viiG-~G~iglE~A~~~~~~G~~Vtvi~~~~~~ 60 (123)
T d1dxla2 25 PKKLVVIG-AGYIGLEMGSVWGRIGSEVTVVEFASEI 60 (123)
T ss_dssp CSEEEESC-CSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCeEEEEc-cchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence 46899999 6999999999999999999999886543
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=94.88 E-value=0.018 Score=44.05 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=36.7
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchh
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKD 155 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~ 155 (263)
..+.||+++|.| -|.+|+-++.+|...|.+|+++..++-...+
T Consensus 19 ~~laGk~vvV~G-YG~vGrG~A~~~rg~Ga~V~V~E~DPi~alq 61 (163)
T d1v8ba1 19 FLISGKIVVICG-YGDVGKGCASSMKGLGARVYITEIDPICAIQ 61 (163)
T ss_dssp CCCTTSEEEEEC-CSHHHHHHHHHHHHHTCEEEEECSCHHHHHH
T ss_pred ceecCCEEEEec-ccccchhHHHHHHhCCCEEEEEecCchhhHH
Confidence 357899999999 9999999999999999999999876544333
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.88 E-value=0.017 Score=41.84 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=29.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
++++|.| +|+||.+++..|.+.|.+|.++.|+
T Consensus 21 ~~vvIIG-gG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVG-ASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEC-CCccHHHHHHHHhhcCCeEEEEEec
Confidence 4799999 6999999999999999999999875
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.87 E-value=0.025 Score=44.03 Aligned_cols=40 Identities=20% Similarity=0.337 Sum_probs=34.7
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
...+.+|++.|.| .|.||+.+++.+...|.+|+..++...
T Consensus 39 ~~~l~~k~vgiiG-~G~IG~~va~~~~~fg~~v~~~d~~~~ 78 (184)
T d1ygya1 39 GTEIFGKTVGVVG-LGRIGQLVAQRIAAFGAYVVAYDPYVS 78 (184)
T ss_dssp BCCCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred cccccceeeeecc-ccchhHHHHHHhhhccceEEeecCCCC
Confidence 4467889999999 899999999999999999999887543
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.052 Score=41.93 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=53.9
Q ss_pred CccccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch------------------hhhhhhcCCCceEEE-
Q 024766 109 PVGIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK------------------DNLVHHFRNPRFELI- 169 (263)
Q Consensus 109 ~~~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~------------------~~~~~~~~~~~v~~~- 169 (263)
+.....++|+|+|.| +|..|.+-+..|.++|++|+++.+...--- +...+......+++.
T Consensus 36 ~~~~~~~~k~V~IIG-aGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l 114 (179)
T d1ps9a3 36 PILPAVQKKNLAVVG-AGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKL 114 (179)
T ss_dssp CCCSCSSCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEE
T ss_pred ccCCCCCCcEEEEEC-ccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEe
Confidence 334456778999999 699999999999999999999987632200 001111112234443
Q ss_pred EccccccccCCCcEEEEccCC
Q 024766 170 RHDVVEPILLEVDQIYHLACP 190 (263)
Q Consensus 170 ~~Dv~~~~~~~iD~Vi~~Ag~ 190 (263)
..+++.+...+.|.||...|.
T Consensus 115 ~~~Vt~~~~~~~d~vilAtG~ 135 (179)
T d1ps9a3 115 NHTVTADQLQAFDETILASGI 135 (179)
T ss_dssp SCCCCSSSSCCSSEEEECCCE
T ss_pred CCEEcccccccceeEEEeecC
Confidence 345555566778999998874
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=94.69 E-value=0.026 Score=41.00 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=30.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
.++++|.| +|+||.+++..|.+.|.+|.++.+..
T Consensus 26 p~~vvIiG-gG~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 26 PGKLLIIG-GGIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp CSEEEEES-CSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEEC-CCHHHHHHHHHhhcCCCEEEEEEeec
Confidence 46899999 69999999999999999999997764
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.69 E-value=0.01 Score=46.33 Aligned_cols=38 Identities=18% Similarity=0.288 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~ 153 (263)
+-++|.|.|+ |.+|..++..++..|++|++.+++++..
T Consensus 3 ~I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~~l 40 (186)
T d1wdka3 3 DVKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEHGI 40 (186)
T ss_dssp CCSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHHHH
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHHHH
Confidence 3468999995 9999999999999999999999976543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.51 E-value=0.013 Score=45.12 Aligned_cols=72 Identities=15% Similarity=0.013 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCce-EEEEcccccc------ccCCCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRF-ELIRHDVVEP------ILLEVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v-~~~~~Dv~~~------~~~~iD~Vi~ 186 (263)
.+.+|+|+| .|++|...+..+...|. +|+++++++++.+- ..+. ....+ +..+.|.... .-.++|++|.
T Consensus 29 ~g~tVlI~G-~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~-Ak~~-GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~ 105 (176)
T d1d1ta2 29 PGSTCVVFG-LGGVGLSVIMGCKSAGASRIIGIDLNKDKFEK-AMAV-GATECISPKDSTKPISEVLSEMTGNNVGYTFE 105 (176)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGGHHH-HHHH-TCSEEECGGGCSSCHHHHHHHHHTSCCCEEEE
T ss_pred CCCEEEEEC-CCchhHHHHHHHHHcCCceEEEecCcHHHHHH-HHhc-CCcEEECccccchHHHHHHHHhccccceEEEE
Confidence 566999998 59999999999999996 89999987665432 2222 22211 1111121111 1136999999
Q ss_pred ccC
Q 024766 187 LAC 189 (263)
Q Consensus 187 ~Ag 189 (263)
+.|
T Consensus 106 ~~g 108 (176)
T d1d1ta2 106 VIG 108 (176)
T ss_dssp CSC
T ss_pred eCC
Confidence 986
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.49 E-value=0.026 Score=42.93 Aligned_cols=70 Identities=16% Similarity=0.097 Sum_probs=42.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEc--cccccc-----cCCCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRH--DVVEPI-----LLEVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~--Dv~~~~-----~~~iD~Vi~ 186 (263)
.+.+|+|.| +|.+|...+..+...|. .|++++++++ +.+...+. ... .++.. |..+.. -.++|++|.
T Consensus 32 ~g~~vli~G-aG~vG~~~~~~a~~~g~~~vv~~~~~~~-k~~~~~~~-ga~--~~i~~~~~~~~~~~~~~~~~g~d~vid 106 (172)
T d1h2ba2 32 PGAYVAIVG-VGGLGHIAVQLLKVMTPATVIALDVKEE-KLKLAERL-GAD--HVVDARRDPVKQVMELTRGRGVNVAMD 106 (172)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHHCCCEEEEEESSHH-HHHHHHHT-TCS--EEEETTSCHHHHHHHHTTTCCEEEEEE
T ss_pred CCCEEEEeC-CChHHHHHHHHHHhhcCcccccccchhH-HHHHHhhc-ccc--eeecCcccHHHHHHHhhCCCCceEEEE
Confidence 456899988 59999998888888887 5555665433 22333222 222 23332 221111 135999999
Q ss_pred ccC
Q 024766 187 LAC 189 (263)
Q Consensus 187 ~Ag 189 (263)
++|
T Consensus 107 ~~g 109 (172)
T d1h2ba2 107 FVG 109 (172)
T ss_dssp SSC
T ss_pred ecC
Confidence 996
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=94.43 E-value=0.038 Score=41.58 Aligned_cols=33 Identities=21% Similarity=0.343 Sum_probs=27.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhC--CCeEEEEec
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDR--GDEVIVIDN 148 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~--G~~V~~l~r 148 (263)
+|+|.|.|+||.||....+-+.+. .++|.++.-
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa 36 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA 36 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 579999999999999999999875 457776643
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.40 E-value=0.092 Score=40.07 Aligned_cols=70 Identities=17% Similarity=0.035 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEcccccc---------ccCCCcEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP---------ILLEVDQI 184 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~---------~~~~iD~V 184 (263)
.|.+|+|.| +|+||...+..+...|+ .|++.+.++++ .+...+ ++... .++....+. .-.++|++
T Consensus 28 ~G~~VlV~G-~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r-~~~a~~-~Ga~~--~i~~~~~~~~~~~~~~~~~~~G~d~v 102 (174)
T d1e3ia2 28 PGSTCAVFG-LGCVGLSAIIGCKIAGASRIIAIDINGEK-FPKAKA-LGATD--CLNPRELDKPVQDVITELTAGGVDYS 102 (174)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEECSCGGG-HHHHHH-TTCSE--EECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred CCCEEEEEC-CChHHHHHHHHHHHhCCceeeeeccchHH-HHHHHH-hCCCc--ccCCccchhhhhhhHhhhhcCCCcEE
Confidence 456999998 69999999999999998 56666665443 333332 23222 222211111 12469999
Q ss_pred EEccC
Q 024766 185 YHLAC 189 (263)
Q Consensus 185 i~~Ag 189 (263)
|.|+|
T Consensus 103 ie~~G 107 (174)
T d1e3ia2 103 LDCAG 107 (174)
T ss_dssp EESSC
T ss_pred EEecc
Confidence 99997
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.38 E-value=0.028 Score=47.24 Aligned_cols=35 Identities=31% Similarity=0.603 Sum_probs=31.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
+.|+|+|.| +|.-|...|.+|++.|++|.++..+.
T Consensus 1 k~KKI~IIG-aG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 1 KSKKILIVG-AGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 468999999 79999999999999999999997653
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=94.34 E-value=0.027 Score=42.03 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFF 150 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~ 150 (263)
.||+|+|.| +|++|.+++..|.+.+. +|+++.+.+
T Consensus 1 ~gkrivIvG-gG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVG-GGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEEC-CSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEEC-ccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 478999999 69999999999999885 788887654
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=94.24 E-value=0.051 Score=38.52 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=28.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHh---CCCeEEEEecCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLID---RGDEVIVIDNFFT 151 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~---~G~~V~~l~r~~~ 151 (263)
.++++|.| +|++|-+++..|.+ .|.+|.++.+.+.
T Consensus 18 p~~v~IiG-gG~ig~E~A~~l~~~~~~g~~Vtli~~~~~ 55 (117)
T d1feca2 18 PKRALCVG-GGYISIEFAGIFNAYKARGGQVDLAYRGDM 55 (117)
T ss_dssp CSEEEEEC-SSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred CCeEEEEC-CChHHHHHHHHhHhhcccccccceeccccc
Confidence 46899999 69999999976554 4889999988644
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.21 E-value=0.025 Score=43.16 Aligned_cols=35 Identities=17% Similarity=0.201 Sum_probs=30.8
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFT 151 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~ 151 (263)
+|+|+|.| +|..|...|..|.++|+ +|.++.+...
T Consensus 4 ~~kVaIIG-aGpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLG-AGPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEEC-CSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 57899999 69999999999999998 5999987643
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.17 E-value=0.034 Score=46.52 Aligned_cols=37 Identities=24% Similarity=0.294 Sum_probs=32.7
Q ss_pred cccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEec
Q 024766 111 GIGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN 148 (263)
Q Consensus 111 ~~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r 148 (263)
...+++|+|+|-| -|-+|.++++.|.+.|++|+.++-
T Consensus 31 ~~~L~gktvaIqG-fGnVG~~~A~~L~e~Gakvv~vsD 67 (293)
T d1hwxa1 31 TPGFGDKTFAVQG-FGNVGLHSMRYLHRFGAKCVAVGE 67 (293)
T ss_dssp CSSSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEEEc
Confidence 3468899999999 799999999999999999988753
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.16 E-value=0.026 Score=42.50 Aligned_cols=38 Identities=21% Similarity=0.070 Sum_probs=31.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~ 153 (263)
.+.+|+|.|+ |.||...+..+...|.+|+++++++++.
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~ 64 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKL 64 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHH
Confidence 4679999885 9999998888888899999999765443
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=94.07 E-value=0.016 Score=44.43 Aligned_cols=38 Identities=21% Similarity=0.444 Sum_probs=32.2
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhh
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN 156 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~ 156 (263)
+|-|.| .|-+|..+++.|++.|++|.+.+|+.++.++.
T Consensus 3 kIGvIG-lG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l 40 (178)
T d1pgja2 3 DVGVVG-LGVMGANLALNIAEKGFKVAVFNRTYSKSEEF 40 (178)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSHHHHHHH
T ss_pred EEEEEe-ehHHHHHHHHHHHHCCCeEEEEECCHHHHHHH
Confidence 577888 89999999999999999999999876554433
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=93.97 E-value=0.026 Score=45.54 Aligned_cols=32 Identities=22% Similarity=0.352 Sum_probs=29.0
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
.|+|.| +|.+|..++.+|+++|.+|+++++..
T Consensus 6 DvvIIG-aGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIG-GGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 389999 69999999999999999999998753
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.91 E-value=0.014 Score=44.95 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=44.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEc---ccccc---cc--CCCcEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRH---DVVEP---IL--LEVDQIY 185 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~---Dv~~~---~~--~~iD~Vi 185 (263)
.+.+|+|.|+ |.||...+..+...|+ +|+++++++++ .+...+ ++.. ..++. |..+. .. .++|++|
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r-~~~a~~-lGa~--~~i~~~~~~~~~~v~~~t~g~G~D~vi 101 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPIC-VEAAKF-YGAT--DILNYKNGHIEDQVMKLTNGKGVDRVI 101 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHH-HHHHHH-HTCS--EEECGGGSCHHHHHHHHTTTSCEEEEE
T ss_pred CCCEEEEEcC-Ccchhhhhhhhhcccccccccccchhhh-HHHHHh-hCcc--ccccccchhHHHHHHHHhhccCcceEE
Confidence 4668999985 9999999888888898 78888875443 222222 2222 22222 11111 11 2499999
Q ss_pred EccCC
Q 024766 186 HLACP 190 (263)
Q Consensus 186 ~~Ag~ 190 (263)
.++|.
T Consensus 102 d~~g~ 106 (174)
T d1jqba2 102 MAGGG 106 (174)
T ss_dssp ECSSC
T ss_pred EccCC
Confidence 99973
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=93.87 E-value=0.15 Score=38.40 Aligned_cols=68 Identities=13% Similarity=0.214 Sum_probs=37.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhC-C-CeEEEEe-cCCccchhhhhhhcCCCceEEEEc--c-c-cccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDR-G-DEVIVID-NFFTGRKDNLVHHFRNPRFELIRH--D-V-VEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~-G-~~V~~l~-r~~~~~~~~~~~~~~~~~v~~~~~--D-v-~~~~~~~iD~Vi~~A 188 (263)
.++.|.| +|+||..+..++++. . .+++++. |+.+.......+.. .+..... | + .+..+.++|+||.+.
T Consensus 5 irvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~---~i~~~~~~~d~l~~~~~~~~iDiVf~AT 79 (157)
T d1nvmb1 5 LKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM---GVTTTYAGVEGLIKLPEFADIDFVFDAT 79 (157)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT---TCCEESSHHHHHHHSGGGGGEEEEEECS
T ss_pred cEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhc---CCcccccceeeeeecccccccCEEEEcC
Confidence 4899999 999999765555543 3 3666664 44443322222221 2222221 2 1 223456799999875
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=93.87 E-value=0.13 Score=36.34 Aligned_cols=64 Identities=16% Similarity=0.203 Sum_probs=44.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc----c---CCCcEEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI----L---LEVDQIYH 186 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~----~---~~iD~Vi~ 186 (263)
.+.+|.|.| +|.+|+-++....+.|++|++++.+.+.-...+. -..+.+|..|.. + .++|+|..
T Consensus 10 ~~~kigIlG-gGQL~rMla~aA~~lG~~v~v~d~~~~~PA~~va-------~~~i~~~~~d~~~l~~~~~~~~~DviT~ 80 (111)
T d1kjqa2 10 AATRVMLLG-SGELGKEVAIECQRLGVEVIAVDRYADAPAMHVA-------HRSHVINMLDGDALRRVVELEKPHYIVP 80 (111)
T ss_dssp TCCEEEEES-CSHHHHHHHHHHHTTTCEEEEEESSTTCGGGGGS-------SEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred CCCEEEEEe-CCHHHHHHHHHHHHCCCEEEEEcCCCCCchhhcC-------CeEEECCCCCHHHHHHHHHhhCCceEEE
Confidence 345899999 7999999999999999999999976553322221 134555555442 1 25788854
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=93.83 E-value=0.033 Score=45.24 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=30.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
+.|+|+|+| +|..|...+.+|.++|++|.++.+.
T Consensus 29 ~pkkV~IIG-aG~aGLsaA~~L~~~G~~V~vlE~~ 62 (370)
T d2iida1 29 NPKHVVIVG-AGMAGLSAAYVLAGAGHQVTVLEAS 62 (370)
T ss_dssp SCCEEEEEC-CBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 557999999 6999999999999999999999764
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.71 E-value=0.047 Score=40.01 Aligned_cols=35 Identities=34% Similarity=0.364 Sum_probs=28.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHH----hCCCeEEEEecCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLI----DRGDEVIVIDNFF 150 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll----~~G~~V~~l~r~~ 150 (263)
..++++|.| +|++|.+++..|. +.|.+|+++.+..
T Consensus 36 ~~k~i~IvG-gG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~ 74 (137)
T d1m6ia2 36 EVKSITIIG-GGFLGSELACALGRKARALGTEVIQLFPEK 74 (137)
T ss_dssp HCSEEEEEC-CSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence 357899998 6999999999986 3588999997754
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.56 E-value=0.042 Score=42.01 Aligned_cols=71 Identities=15% Similarity=0.024 Sum_probs=44.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccc----c---c--cCCCcE
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVE----P---I--LLEVDQ 183 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~----~---~--~~~iD~ 183 (263)
..+.+|+|.| .|++|...+..+...|+ +|+++++++++. +...+. ... ..++..-.| . . -.++|+
T Consensus 26 ~~G~~VlV~G-aGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl-~~a~~l-Ga~--~~i~~~~~d~~~~~~~~~~~~~G~d~ 100 (174)
T d1p0fa2 26 TPGSTCAVFG-LGGVGFSAIVGCKAAGASRIIGVGTHKDKF-PKAIEL-GAT--ECLNPKDYDKPIYEVICEKTNGGVDY 100 (174)
T ss_dssp CTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHT-TCS--EEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCEEEEEC-CCchhHHHHHHHHHcCCceeeccCChHHHH-HHHHHc-CCc--EEEcCCCchhHHHHHHHHhcCCCCcE
Confidence 3566999998 59999999999999997 688887765443 222222 222 223221111 1 1 135899
Q ss_pred EEEccC
Q 024766 184 IYHLAC 189 (263)
Q Consensus 184 Vi~~Ag 189 (263)
+|-++|
T Consensus 101 vid~~g 106 (174)
T d1p0fa2 101 AVECAG 106 (174)
T ss_dssp EEECSC
T ss_pred EEEcCC
Confidence 999986
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=93.47 E-value=0.051 Score=43.17 Aligned_cols=35 Identities=29% Similarity=0.230 Sum_probs=31.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
.++|+|.| +|..|..++..|+++|++|+++.+...
T Consensus 4 ~~kV~IiG-aG~aGl~~A~~L~~~G~~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVG-GSISGLTAALMLRDAGVDVDVYERSPQ 38 (265)
T ss_dssp CSEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 35899999 699999999999999999999987543
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=93.29 E-value=0.069 Score=43.28 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEec
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN 148 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r 148 (263)
.+++++|+|-| -|-+|.++++.|.+.|++|+.++-
T Consensus 28 ~l~g~~v~IqG-fGnVG~~~a~~L~~~Gakvv~vsD 62 (242)
T d1v9la1 28 GIEGKTVAIQG-MGNVGRWTAYWLEKMGAKVIAVSD 62 (242)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEeec
Confidence 57899999998 899999999999999999987763
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.26 E-value=0.036 Score=41.47 Aligned_cols=65 Identities=17% Similarity=0.233 Sum_probs=42.9
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
++|.+.| +|-+|+++++.|++.|+++++.+|+.++..+... ..+.. . .+-.++...+.|+||-+.
T Consensus 1 MkIg~IG-~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~-~~g~~---~--~~~~~~~~~~~dvIilav 65 (152)
T d2ahra2 1 MKIGIIG-VGKMASAIIKGLKQTPHELIISGSSLERSKEIAE-QLALP---Y--AMSHQDLIDQVDLVILGI 65 (152)
T ss_dssp CEEEEEC-CSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHH-HHTCC---B--CSSHHHHHHTCSEEEECS
T ss_pred CEEEEEe-ccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhcc-cccee---e--echhhhhhhccceeeeec
Confidence 4688888 8999999999999999999998887554433222 21211 1 111223345688888665
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.89 E-value=0.056 Score=41.48 Aligned_cols=32 Identities=28% Similarity=0.364 Sum_probs=28.9
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
-|+|.| +|..|...|.+|+++|.+|.++.++.
T Consensus 7 DviViG-aG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 7 DVIVLG-TGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 378999 79999999999999999999998763
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=92.87 E-value=0.082 Score=38.00 Aligned_cols=64 Identities=16% Similarity=0.094 Sum_probs=45.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEccccccc------cCCCcEEEEcc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPI------LLEVDQIYHLA 188 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~------~~~iD~Vi~~A 188 (263)
|+++|.| .|-+|..++++|. |.+|.+++.+++..... ....+.++.+|.+++. +.+.+.++-+.
T Consensus 1 kHivI~G-~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~-----~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~ 70 (129)
T d2fy8a1 1 RHVVICG-WSESTLECLRELR--GSEVFVLAEDENVRKKV-----LRSGANFVHGDPTRVSDLEKANVRGARAVIVNL 70 (129)
T ss_dssp CCEEEES-CCHHHHHHHHTSC--GGGEEEEESCTTHHHHH-----HHTTCEEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred CEEEEEC-CCHHHHHHHHHHc--CCCCEEEEcchHHHHHH-----HhcCccccccccCCHHHHHHhhhhcCcEEEEec
Confidence 5688888 6899999999984 55677887654433221 2346788999998873 45688888766
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=92.69 E-value=0.055 Score=42.92 Aligned_cols=32 Identities=22% Similarity=0.570 Sum_probs=28.8
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
++|+|.| +|.-|...+.+|.++|++|+++.++
T Consensus 1 m~V~IIG-aG~aGL~aA~~L~~~G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVG-GGISGLAVAHHLRSRGTDAVLLESS 32 (347)
T ss_dssp CCEEEEC-CBHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CeEEEEC-CCHHHHHHHHHHHhCCCCEEEEecC
Confidence 4699999 5999999999999999999999764
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.59 E-value=0.11 Score=40.97 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=32.7
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
....|+|+|.| +|..|...+.+|.++|++|+++.+..
T Consensus 46 ~~~~k~VvIIG-aGpAGl~aA~~l~~~G~~v~l~E~~~ 82 (233)
T d1djqa3 46 TKNKDSVLIVG-AGPSGSEAARVLMESGYTVHLTDTAE 82 (233)
T ss_dssp CSSCCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred ccCCceEEEEc-ccHHHHHHHHHHHHhccceeeEeecc
Confidence 34678999999 69999999999999999999997653
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=92.57 E-value=0.13 Score=39.05 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=42.5
Q ss_pred CEEEEEcCCChHHHH-HHHHHHhC-----CCeEEEEecCCccchhh---hhhhc--CCCceEEEEccccccccCCCcEEE
Q 024766 117 LRIVVTGGAGFVGSH-LVDKLIDR-----GDEVIVIDNFFTGRKDN---LVHHF--RNPRFELIRHDVVEPILLEVDQIY 185 (263)
Q Consensus 117 k~vlVTGatG~IG~~-l~~~Ll~~-----G~~V~~l~r~~~~~~~~---~~~~~--~~~~v~~~~~Dv~~~~~~~iD~Vi 185 (263)
.+|.|.|| |.+|.. ++..++.. +.+++++|.++++.+.. +.+.. ...........-..+.+.+.|+||
T Consensus 4 ~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 4 FSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp EEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred ceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 37888897 445543 33444432 23899999876554311 11111 133444444433455678999999
Q ss_pred EccCCC
Q 024766 186 HLACPA 191 (263)
Q Consensus 186 ~~Ag~~ 191 (263)
+.||..
T Consensus 83 itag~~ 88 (167)
T d1u8xx1 83 AHIRVG 88 (167)
T ss_dssp ECCCTT
T ss_pred ECCCcC
Confidence 999853
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.55 E-value=0.24 Score=37.45 Aligned_cols=114 Identities=11% Similarity=0.001 Sum_probs=63.2
Q ss_pred CEEEEEcC-CChHHHHHHHHHHhCC----CeEEEEecCCccchhhhhhh-----c--CCCceEEEEccccccccCCCcEE
Q 024766 117 LRIVVTGG-AGFVGSHLVDKLIDRG----DEVIVIDNFFTGRKDNLVHH-----F--RNPRFELIRHDVVEPILLEVDQI 184 (263)
Q Consensus 117 k~vlVTGa-tG~IG~~l~~~Ll~~G----~~V~~l~r~~~~~~~~~~~~-----~--~~~~v~~~~~Dv~~~~~~~iD~V 184 (263)
++|.|.|| +.+.+..++..++... .++.++|.+++....+.... + ...........-..+.+.+.|+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 36888886 3345555555555432 38888887655422221111 1 23344454444445567899999
Q ss_pred EEccCCCCCCCCC--------------C--CHH--HHHHHHHHHHHHHHHHHHHcCC--eEEEEcC
Q 024766 185 YHLACPASPVHYK--------------Y--NPV--KTIKTNVMGTLNMLGLAKRVGA--KFLLTST 230 (263)
Q Consensus 185 i~~Ag~~~~~~~~--------------~--~~~--~~~~~Nv~gt~~ll~~a~~~~~--~iV~vSS 230 (263)
|+.|+......+. + .+. ....-|+.-...+++..++... .++.+|-
T Consensus 82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtN 147 (169)
T d1s6ya1 82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTN 147 (169)
T ss_dssp EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred EEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCC
Confidence 9999854311100 0 011 1124577777888888888765 4555554
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=92.46 E-value=0.07 Score=40.11 Aligned_cols=32 Identities=16% Similarity=0.290 Sum_probs=27.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCC--CeEEEEe
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVID 147 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~ 147 (263)
||+|.|.|+||.||....+-+.+.. ++|.++.
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Ls 34 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALV 34 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEE
Confidence 5789999999999999999988864 4776664
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=92.44 E-value=0.072 Score=39.99 Aligned_cols=34 Identities=21% Similarity=0.131 Sum_probs=28.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
++++|+|.| +|++|.+++..|.+.|.+|.++.+.
T Consensus 2 ~~~~VvIIG-gG~~G~e~A~~l~~~g~~v~v~~~~ 35 (185)
T d1q1ra1 2 ANDNVVIVG-TGLAGVEVAFGLRASGWEGNIRLVG 35 (185)
T ss_dssp CSCEEEEEC-CSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred CCCCEEEEC-CcHHHHHHHHHHHHcCCceEEEEec
Confidence 457899999 7999999999999999876665444
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.40 E-value=0.86 Score=33.06 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=23.2
Q ss_pred EEEEEcCCChHHHHHHHHHHhC-CCeEEE
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDR-GDEVIV 145 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~-G~~V~~ 145 (263)
+|.|.|++|-.|+.+++.+.+. +.++..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~ 29 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSA 29 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEE
Confidence 6899999999999999988775 446554
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.31 E-value=0.11 Score=38.50 Aligned_cols=35 Identities=26% Similarity=0.472 Sum_probs=28.6
Q ss_pred CCEEEEE-cCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 116 RLRIVVT-GGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 116 ~k~vlVT-GatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
++.++|. .+.|+||.+++..|+++|.+|.++.+..
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~ 74 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH 74 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence 3455554 3579999999999999999999998764
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=91.69 E-value=0.11 Score=34.49 Aligned_cols=34 Identities=21% Similarity=0.087 Sum_probs=30.4
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
+|+|.|.| +|.+|+-++..-.+.|.+|++++-..
T Consensus 1 ~k~vgIlG-~GQLgrMl~~Aa~~LG~~v~vldp~~ 34 (78)
T d3etja2 1 MKQVCVLG-NGQLGRMLRQAGEPLGIAVWPVGLDA 34 (78)
T ss_dssp CEEEEEEB-CSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred CCEEEEEc-CCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 47899999 79999999999999999999998643
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=91.60 E-value=0.042 Score=42.95 Aligned_cols=71 Identities=25% Similarity=0.142 Sum_probs=43.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEE----cccccc---cc--CCCcEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIR----HDVVEP---IL--LEVDQI 184 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~----~Dv~~~---~~--~~iD~V 184 (263)
.|.+|+|.| +|.||...+..+...|. +|+++++++++. +...+. . .+.+. .|+.+. .. .++|++
T Consensus 25 ~G~tVlV~G-aG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl-~~a~~~-G---a~~~~~~~~~~~~~~i~~~t~g~g~D~v 98 (195)
T d1kola2 25 PGSTVYVAG-AGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKAQ-G---FEIADLSLDTPLHEQIAALLGEPEVDCA 98 (195)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHT-T---CEEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHhhcccceeeecccchhh-Hhhhhc-c---ccEEEeCCCcCHHHHHHHHhCCCCcEEE
Confidence 566999998 59999887777777777 788887754432 222222 1 22221 122221 11 258999
Q ss_pred EEccCCC
Q 024766 185 YHLACPA 191 (263)
Q Consensus 185 i~~Ag~~ 191 (263)
|.+.|..
T Consensus 99 id~vG~~ 105 (195)
T d1kola2 99 VDAVGFE 105 (195)
T ss_dssp EECCCTT
T ss_pred EECcccc
Confidence 9999843
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=91.49 E-value=0.092 Score=42.27 Aligned_cols=31 Identities=29% Similarity=0.554 Sum_probs=28.3
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
-|+|.| +|.+|..++.+|+++|.+|+++.+.
T Consensus 5 DvvIIG-aGi~Gls~A~~La~~G~~V~viE~~ 35 (281)
T d2gf3a1 5 DVIVVG-AGSMGMAAGYQLAKQGVKTLLVDAF 35 (281)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 378888 6999999999999999999999875
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.37 E-value=0.092 Score=43.38 Aligned_cols=32 Identities=22% Similarity=0.475 Sum_probs=29.0
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
..|+|.| +|.-|..+|++|++.|.+|.++.++
T Consensus 2 ~dv~IIG-aG~sGl~~A~~L~~~g~~V~iiEk~ 33 (298)
T d1i8ta1 2 YDYIIVG-SGLFGAVCANELKKLNKKVLVIEKR 33 (298)
T ss_dssp EEEEEEC-CSHHHHHHHHHHGGGTCCEEEECSS
T ss_pred ccEEEEC-CcHHHHHHHHHHHhCCCcEEEEECC
Confidence 4689999 7999999999999999999999765
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.30 E-value=0.085 Score=39.37 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=30.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~ 152 (263)
.+.+|+|.| +|.||...+..+...|++|+++++++++
T Consensus 27 ~g~~vlv~G-~G~iG~~a~~~a~~~g~~v~~~~~~~~r 63 (168)
T d1rjwa2 27 PGEWVAIYG-IGGLGHVAVQYAKAMGLNVVAVDIGDEK 63 (168)
T ss_dssp TTCEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CCCEEEEee-cccchhhhhHHHhcCCCeEeccCCCHHH
Confidence 456899987 5999999888888899999999876544
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.14 E-value=0.075 Score=41.06 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=27.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
|+|.|.| .|++|..++..| ++|++|+++|.+++
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~ 33 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPS 33 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCHH
Confidence 4788887 899999999755 57999999997644
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=90.94 E-value=0.16 Score=35.89 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=27.2
Q ss_pred CCEEEEEcCCChHHHHHHHHHHh---CCCeEEEEecCCc
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLID---RGDEVIVIDNFFT 151 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~---~G~~V~~l~r~~~ 151 (263)
+++++|.| +|++|.+++..|.+ +|.+|.++.+...
T Consensus 20 p~~v~ivG-gG~ig~E~A~~l~~l~~~~~~Vtli~~~~~ 57 (117)
T d1aoga2 20 PRRVLTVG-GGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57 (117)
T ss_dssp CSEEEEEC-SSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred CCeEEEEC-CcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence 46899999 59999999976654 4568999987543
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.73 E-value=0.17 Score=40.38 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=29.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEec
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDN 148 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r 148 (263)
+.++|+|.| +|.-|...+.+|.++|++|.++-.
T Consensus 4 ~~~kViVIG-aG~aGL~aA~~L~~~G~~V~VlEa 36 (449)
T d2dw4a2 4 KTGKVIIIG-SGVSGLAAARQLQSFGMDVTLLEA 36 (449)
T ss_dssp CCCEEEEEC-CBHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHhCCCCEEEEeC
Confidence 345799999 699999999999999999999854
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=90.60 E-value=0.087 Score=42.65 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=29.2
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
+|+|.| +|-.|..++..|.+.|.+|.++.+.+
T Consensus 4 ~V~IvG-aGp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIG-AGPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 589999 58999999999999999999998764
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=90.44 E-value=0.12 Score=42.05 Aligned_cols=31 Identities=48% Similarity=0.827 Sum_probs=27.9
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC-eEEEEecC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF 149 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~ 149 (263)
+|+|.| +|.+|..++.+|+++|. +|.++++.
T Consensus 3 dViIIG-aGi~G~s~A~~La~~G~~~V~liE~~ 34 (305)
T d1pj5a2 3 RIVIIG-AGIVGTNLADELVTRGWNNITVLDQG 34 (305)
T ss_dssp CEEEEC-CSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence 588999 69999999999999996 69999876
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.34 E-value=0.49 Score=37.90 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=29.1
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHh-CCCeEEEEe
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLID-RGDEVIVID 147 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~-~G~~V~~l~ 147 (263)
.+++|+|+|-| -|-+|.++++.|.+ .|..|+.+.
T Consensus 29 ~l~g~~v~IqG-fGnVG~~~a~~L~~~~G~kvv~vs 63 (239)
T d1gtma1 29 TLKGKTIAIQG-YGNAGYYLAKIMSEDFGMKVVAVS 63 (239)
T ss_dssp CSTTCEEEEEC-CSHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHhcCcceeecc
Confidence 37899999999 79999999999986 588888765
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=90.18 E-value=0.76 Score=34.10 Aligned_cols=70 Identities=17% Similarity=0.084 Sum_probs=42.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccc----ccc-----ccCCCcEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDV----VEP-----ILLEVDQI 184 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv----~~~-----~~~~iD~V 184 (263)
.+.+|+|.|+ |++|...+..+...|. +|+++++++++. +...+ ++.. ..++.+- .++ .-.++|++
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl-~~a~~-~GAd--~~in~~~~~~~~~~~~~~~~~~G~d~v 102 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKF-EKAKV-FGAT--DFVNPNDHSEPISQVLSKMTNGGVDFS 102 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHH-TTCC--EEECGGGCSSCHHHHHHHHHTSCBSEE
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHH-HHHHH-cCCc--EEEcCCCcchhHHHHHHhhccCCccee
Confidence 5668999985 7788888888888877 677777665433 22222 2222 2332211 111 11359999
Q ss_pred EEccC
Q 024766 185 YHLAC 189 (263)
Q Consensus 185 i~~Ag 189 (263)
+.+.|
T Consensus 103 id~~G 107 (175)
T d1cdoa2 103 LECVG 107 (175)
T ss_dssp EECSC
T ss_pred eeecC
Confidence 99997
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=89.85 E-value=0.72 Score=35.38 Aligned_cols=38 Identities=21% Similarity=0.300 Sum_probs=33.0
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccch
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRK 154 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~ 154 (263)
.-+|+|.| .|-.|..-++-....|++|.++|.+....+
T Consensus 29 pa~VvViG-aGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~ 66 (183)
T d1l7da1 29 PARVLVFG-VGVAGLQAIATAKRLGAVVMATDVRAATKE 66 (183)
T ss_dssp CCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCSTTHH
T ss_pred CcEEEEEc-CcHHHHHHHHHHHHcCCEEEEEeccHHHHH
Confidence 34899999 699999999999999999999998866543
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=89.52 E-value=0.51 Score=37.66 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=29.6
Q ss_pred cCCCCEEEEEcCCChHHHHHHHHHHh-CCCeEEEEe
Q 024766 113 GRRRLRIVVTGGAGFVGSHLVDKLID-RGDEVIVID 147 (263)
Q Consensus 113 ~~~~k~vlVTGatG~IG~~l~~~Ll~-~G~~V~~l~ 147 (263)
.+++++|+|-| .|-+|.++++.|.+ .|..|+.++
T Consensus 28 ~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vs 62 (234)
T d1b26a1 28 DPKKATVAVQG-FGNVGQFAALLISQELGSKVVAVS 62 (234)
T ss_dssp CTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEE
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEee
Confidence 56889999988 89999999999975 599988775
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=89.48 E-value=0.69 Score=34.97 Aligned_cols=31 Identities=26% Similarity=0.498 Sum_probs=25.3
Q ss_pred CCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEe
Q 024766 116 RLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVID 147 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~ 147 (263)
|++|.|-| -|-||+.+.+.+.+++. +|+.+.
T Consensus 1 M~~VgING-fGRIGR~v~R~l~~~~di~vvaIn 32 (171)
T d1cf2o1 1 MKAVAING-YGTVGKRVADAIAQQDDMKVIGVS 32 (171)
T ss_dssp CEEEEEEC-CSHHHHHHHHHHHTSSSEEEEEEE
T ss_pred CeEEEEEc-CcHHHHHHHHHHHhCCCceEEEEe
Confidence 56899998 89999999999988875 666554
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=89.48 E-value=0.16 Score=38.19 Aligned_cols=73 Identities=29% Similarity=0.344 Sum_probs=42.8
Q ss_pred CEEEEEcCCChHHHHHHHH-HHhC-----CCeEEEEecCCccchhhhhhh---cCCCceEEEEccccccccCCCcEEEEc
Q 024766 117 LRIVVTGGAGFVGSHLVDK-LIDR-----GDEVIVIDNFFTGRKDNLVHH---FRNPRFELIRHDVVEPILLEVDQIYHL 187 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~-Ll~~-----G~~V~~l~r~~~~~~~~~~~~---~~~~~v~~~~~Dv~~~~~~~iD~Vi~~ 187 (263)
++|.|.|| |.+|...+-. |+.. +.++.++|.++++... ..+. ............-..+.+.+.|+||..
T Consensus 1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~-~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVit 78 (162)
T d1up7a1 1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKI-VVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQ 78 (162)
T ss_dssp CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHH-HHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEEC
T ss_pred CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHH-HHHHHHhhhccCceEEEecCcccccCCCCEEEEe
Confidence 46899997 5466555533 2221 3589999987654332 2221 112233343334445678899999999
Q ss_pred cCCC
Q 024766 188 ACPA 191 (263)
Q Consensus 188 Ag~~ 191 (263)
||..
T Consensus 79 a~~~ 82 (162)
T d1up7a1 79 FRPG 82 (162)
T ss_dssp CCTT
T ss_pred cccC
Confidence 9853
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=89.29 E-value=0.27 Score=40.78 Aligned_cols=35 Identities=23% Similarity=0.279 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCC--CeEEEEecCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRG--DEVIVIDNFF 150 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G--~~V~~l~r~~ 150 (263)
.+|+|+|+| +|.-|...+..|+++| .+|+++.++.
T Consensus 3 ~~KrVaIIG-aG~sGl~~A~~L~~~~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 3 TIRKIAIIG-AGPSGLVTAKALLAEKAFDQVTLFERRG 39 (335)
T ss_dssp SCCEEEEEC-CSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence 468999999 6999999999999887 4899988763
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.86 E-value=0.037 Score=43.35 Aligned_cols=26 Identities=35% Similarity=0.512 Sum_probs=23.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeE
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEV 143 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V 143 (263)
++|+|.| +|.+|..+|.+|+++|++|
T Consensus 1 mkV~VIG-aGi~GlstA~~L~~~G~~v 26 (246)
T d1kifa1 1 MRVVVIG-AGVIGLSTALCIHERYHSV 26 (246)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHHTTT
T ss_pred CEEEEEC-chHHHHHHHHHHHHCCCCc
Confidence 4799999 6999999999999999754
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=88.78 E-value=0.22 Score=38.05 Aligned_cols=31 Identities=26% Similarity=0.621 Sum_probs=27.6
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCC-eEEEEecC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNF 149 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~ 149 (263)
+|+|.| +|.-|...|.+|.++|. +|+++.++
T Consensus 2 ~V~IIG-aG~aGL~aA~~L~~~G~~~V~vlE~~ 33 (347)
T d1b5qa1 2 RVIVVG-AGMSGISAAKRLSEAGITDLLILEAT 33 (347)
T ss_dssp CEEEEC-CBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred CEEEEC-CcHHHHHHHHHHHhCCCCcEEEEECC
Confidence 588999 69999999999999996 79998765
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=88.74 E-value=0.24 Score=40.29 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=31.5
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEe
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVID 147 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~ 147 (263)
..+++++++|-| -|-+|.++++.|.+.|++|+.+.
T Consensus 32 ~~l~g~~v~IQG-fGnVG~~~a~~L~e~Gakvvavs 66 (255)
T d1bgva1 32 DTLVGKTVALAG-FGNVAWGAAKKLAELGAKAVTLS 66 (255)
T ss_dssp CCSTTCEEEECC-SSHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEe
Confidence 357899999999 79999999999999999998774
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=88.54 E-value=0.27 Score=38.87 Aligned_cols=72 Identities=10% Similarity=-0.102 Sum_probs=48.9
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh-cCCCceEEEEccccccccC-CCcEEEEcc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPILL-EVDQIYHLA 188 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~Dv~~~~~~-~iD~Vi~~A 188 (263)
..+++||=.|++.|. ++..|+++|.+|++++.++.-........ ....++.++.+|+.+..+. ..|+|+...
T Consensus 36 ~~~~~vLDiGCG~G~---~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~ 109 (246)
T d1y8ca_ 36 LVFDDYLDLACGTGN---LTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCL 109 (246)
T ss_dssp CCTTEEEEETCTTST---THHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECT
T ss_pred CCCCeEEEEeCcCCH---HHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceee
Confidence 345689999865443 67788889999999997755332211111 1345789999999887544 589998754
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=88.43 E-value=0.2 Score=40.27 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=32.8
Q ss_pred CCCCEEEEEcCCChHHHHH-----HHHHHhCCCeEEEEecCCcc
Q 024766 114 RRRLRIVVTGGAGFVGSHL-----VDKLIDRGDEVIVIDNFFTG 152 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l-----~~~Ll~~G~~V~~l~r~~~~ 152 (263)
..+.+|+|+.|-||+|+.+ +..|+++|.+|.+++.++..
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~ 60 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA 60 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence 4667888998899999976 78999999999999987653
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=88.07 E-value=0.32 Score=40.15 Aligned_cols=31 Identities=35% Similarity=0.544 Sum_probs=28.6
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
.|+|+| +|..|..++..|.+.|.+|+++.+.
T Consensus 9 dV~IIG-AG~sGl~~a~~L~~~G~~v~i~Ek~ 39 (298)
T d1w4xa1 9 DVLVVG-AGFSGLYALYRLRELGRSVHVIETA 39 (298)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEEC-ccHHHHHHHHHHHhCCCCEEEEEcC
Confidence 699999 6999999999999999999999764
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=88.07 E-value=0.66 Score=36.32 Aligned_cols=102 Identities=11% Similarity=0.157 Sum_probs=53.2
Q ss_pred CEEEEEcCCChHHH-HHHHHHHhC-CCeEEEE-ecCCccchhhhhhhcCCCceEEEEcccccccc--CCCcEEEEccCCC
Q 024766 117 LRIVVTGGAGFVGS-HLVDKLIDR-GDEVIVI-DNFFTGRKDNLVHHFRNPRFELIRHDVVEPIL--LEVDQIYHLACPA 191 (263)
Q Consensus 117 k~vlVTGatG~IG~-~l~~~Ll~~-G~~V~~l-~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~--~~iD~Vi~~Ag~~ 191 (263)
-+|.|.| +|.+|+ +++..+... +.+|+.+ +++.+.. +...+.++.........+-.++.+ .++|+|+-+....
T Consensus 34 iriaiIG-~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a-~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~ 111 (221)
T d1h6da1 34 FGYAIVG-LGKYALNQILPGFAGCQHSRIEALVSGNAEKA-KIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS 111 (221)
T ss_dssp EEEEEEC-CSHHHHHTHHHHTTTCSSEEEEEEECSCHHHH-HHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred EEEEEEc-CcHHHHHHHHHHHHhCCCceEEEEecCCHHHH-HHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence 4899999 699997 466665554 5677755 4443332 333333222221222222233433 3589998766321
Q ss_pred CCCCCCCCHHHH------------HHHHHHHHHHHHHHHHHcCC
Q 024766 192 SPVHYKYNPVKT------------IKTNVMGTLNMLGLAKRVGA 223 (263)
Q Consensus 192 ~~~~~~~~~~~~------------~~~Nv~gt~~ll~~a~~~~~ 223 (263)
. +.+ ...+. +..|+.-...|.+++++.++
T Consensus 112 ~--H~~-~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~ 152 (221)
T d1h6da1 112 L--HAE-FAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK 152 (221)
T ss_dssp G--HHH-HHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred h--hhh-HHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCC
Confidence 1 000 00011 13566667788888888764
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.87 E-value=0.29 Score=39.63 Aligned_cols=30 Identities=33% Similarity=0.523 Sum_probs=27.4
Q ss_pred EEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 119 IVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 119 vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
|+|.| +|..|...+.+|+++|++|+++.+.
T Consensus 2 ViVIG-aG~aGL~aA~~L~~~G~~V~VlE~~ 31 (383)
T d2v5za1 2 VVVVG-GGISGMAAAKLLHDSGLNVVVLEAR 31 (383)
T ss_dssp EEEEC-CBHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEC-CCHHHHHHHHHHHhCCCCEEEEecC
Confidence 78889 7999999999999999999999764
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=87.62 E-value=0.26 Score=41.11 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=28.0
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
-|+|.| +|+-|..+|.+|++.|.+|.++-+-
T Consensus 4 ~VIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIG-TGYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEeC-cCHHHHHHHHHHHHCcCeEEEEecC
Confidence 378888 8999999999999999999999763
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.51 E-value=0.43 Score=37.44 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=29.4
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCc
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFT 151 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~ 151 (263)
.+|+|.| +|..|..++..|.+.|. +|.++.+...
T Consensus 2 ~~V~IvG-aG~aGl~~A~~L~~~Gi~~V~V~Er~~~ 36 (288)
T d3c96a1 2 IDILIAG-AGIGGLSCALALHQAGIGKVTLLESSSE 36 (288)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4799999 69999999999999995 8888887643
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.24 E-value=3 Score=29.60 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=29.9
Q ss_pred cCCCCEEEEEcCC---ChHHHHHHHHHHhCC-CeEEEEec
Q 024766 113 GRRRLRIVVTGGA---GFVGSHLVDKLIDRG-DEVIVIDN 148 (263)
Q Consensus 113 ~~~~k~vlVTGat---G~IG~~l~~~Ll~~G-~~V~~l~r 148 (263)
.++.++|.|.|++ +..|..+.+.|.+.| .+|+.+..
T Consensus 5 lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP 44 (129)
T d2csua1 5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNI 44 (129)
T ss_dssp TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECS
T ss_pred hCCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEecc
Confidence 4677899999998 999999999988766 48888753
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=87.06 E-value=0.42 Score=36.78 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=34.0
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCc
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~ 151 (263)
..++||+|+|.| +|--|-.++.++++.+.+++.+.|+..
T Consensus 28 ~~~~gK~V~VvG-~G~Sa~dia~~~~~~~~~~~~~~~~~~ 66 (235)
T d1w4xa2 28 VDFSGQRVGVIG-TGSSGIQVSPQIAKQAAELFVFQRTPH 66 (235)
T ss_dssp CCCBTCEEEEEC-CSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred CCCCCCEEEEEC-CCccHHHHHHHHHhhhccccccccccc
Confidence 468999999999 799999999999999998888877643
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=87.04 E-value=0.4 Score=36.39 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=27.3
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC--eEEEEecCC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD--EVIVIDNFF 150 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~--~V~~l~r~~ 150 (263)
|+|+|.| +|++|.+++..|.+.+. +|+++.+..
T Consensus 1 ~KVvIIG-gG~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLG-SSHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEEC-SSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEEC-CcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 4799999 69999999999998754 788887653
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=86.90 E-value=1.4 Score=33.19 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=24.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEe
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVID 147 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~ 147 (263)
.+|.|-| -|-||+.+++.+.++.. +|+.+.
T Consensus 3 irIaING-fGRIGR~v~Ral~~~~dieiVaIN 33 (172)
T d2czca2 3 VKVGVNG-YGTIGKRVAYAVTKQDDMELIGIT 33 (172)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEE
T ss_pred EEEEEEC-CCHHHHHHHHHHHhCCCceEEEEe
Confidence 4789999 79999999999998764 666553
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.90 E-value=0.9 Score=37.23 Aligned_cols=72 Identities=17% Similarity=0.048 Sum_probs=47.6
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhh--hhhhcCCCceEEEEcccccccc--CCCcEEEEcc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDN--LVHHFRNPRFELIRHDVVEPIL--LEVDQIYHLA 188 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~--~~~~~~~~~v~~~~~Dv~~~~~--~~iD~Vi~~A 188 (263)
+++++||-.|++.|+ ++..+++.|+ +|++++.++...... ....-...++.++.+|+.+-.. ..+|+|+...
T Consensus 34 ~~~~~VLDiGcG~G~---lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~ 110 (311)
T d2fyta1 34 FKDKVVLDVGCGTGI---LSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEW 110 (311)
T ss_dssp TTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECC
T ss_pred CCcCEEEEECCCCCH---HHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEee
Confidence 578899999865443 4556777886 899998765432111 1111135679999999987644 4689998753
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=86.76 E-value=0.48 Score=35.16 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=51.7
Q ss_pred EEEEEcCCChHHHH-HHHHHHhCC-CeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCCCC
Q 024766 118 RIVVTGGAGFVGSH-LVDKLIDRG-DEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 195 (263)
Q Consensus 118 ~vlVTGatG~IG~~-l~~~Ll~~G-~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~~ 195 (263)
++.|.| +|.+|+. ....|.+.+ .++++++++++.. +...+.++... ...|..+-.-.++|+|+-+.... .+
T Consensus 3 rvgiiG-~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~---~~~~~~~ll~~~iD~V~I~tp~~--~H 75 (167)
T d1xeaa1 3 KIAMIG-LGDIAQKAYLPVLAQWPDIELVLCTRNPKVL-GTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD--VH 75 (167)
T ss_dssp EEEEEC-CCHHHHHTHHHHHTTSTTEEEEEECSCHHHH-HHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG--GH
T ss_pred EEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHhccccc---ccccHHHhcccccceeccccccc--cc
Confidence 788999 6889976 455665553 3666665543332 22333222221 12233332224689988765311 00
Q ss_pred CCC---------C--HHHHHHHHHHHHHHHHHHHHHcCCe
Q 024766 196 YKY---------N--PVKTIKTNVMGTLNMLGLAKRVGAK 224 (263)
Q Consensus 196 ~~~---------~--~~~~~~~Nv~gt~~ll~~a~~~~~~ 224 (263)
.+. + .++=+..|..-...+++++++.+..
T Consensus 76 ~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~ 115 (167)
T d1xeaa1 76 STLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP 115 (167)
T ss_dssp HHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred ccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence 000 0 0001145666677888888888754
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=86.72 E-value=0.37 Score=35.33 Aligned_cols=30 Identities=37% Similarity=0.479 Sum_probs=25.7
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
+|+|.| +|++|.+++..|.+ +.+|.++.+.
T Consensus 2 rVvIIG-gG~~G~e~A~~l~~-~~~Vtvv~~~ 31 (167)
T d1xhca1 2 KVVIVG-NGPGGFELAKQLSQ-TYEVTVIDKE 31 (167)
T ss_dssp EEEEEC-CSHHHHHHHHHHTT-TSEEEEECSS
T ss_pred eEEEEC-CcHHHHHHHHHHHc-CCCEEEEecc
Confidence 789999 69999999999865 6799999865
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.65 E-value=1.4 Score=33.39 Aligned_cols=31 Identities=23% Similarity=0.569 Sum_probs=25.2
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCC-eEEEEec
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDN 148 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r 148 (263)
-+|.|-| .|-||+.+++.+.+++. +|+.+..
T Consensus 2 IKVaING-fGRIGR~v~Ral~~~~dievVaInd 33 (178)
T d1b7go1 2 VNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAK 33 (178)
T ss_dssp EEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEEC
T ss_pred eEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEEC
Confidence 3788998 89999999999998764 7776643
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=86.42 E-value=0.24 Score=39.73 Aligned_cols=35 Identities=17% Similarity=0.252 Sum_probs=29.3
Q ss_pred CCEEEEEcCCChHHHHH-----HHHHHhCCCeEEEEecCCc
Q 024766 116 RLRIVVTGGAGFVGSHL-----VDKLIDRGDEVIVIDNFFT 151 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~l-----~~~Ll~~G~~V~~l~r~~~ 151 (263)
||+|.|+| -||+|+.+ +..|++.|++|.++|.+..
T Consensus 1 mr~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q 40 (269)
T d1cp2a_ 1 MRQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK 40 (269)
T ss_dssp CEEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred CCEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 57899998 99999865 4588999999999998754
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=86.37 E-value=1.2 Score=35.10 Aligned_cols=73 Identities=11% Similarity=-0.080 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhcCCCceEEEEcccccc--ccCCCcEEEEccCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEP--ILLEVDQIYHLACP 190 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~--~~~~iD~Vi~~Ag~ 190 (263)
.+.+||-.|++.|--.+ .|++.+.+|+.+++.++.............++.++.+|..+- .....|.|+.+++.
T Consensus 70 ~g~~VLdIG~GsGy~ta---~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~a~ 144 (224)
T d1vbfa_ 70 KGQKVLEIGTGIGYYTA---LIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVVVWATA 144 (224)
T ss_dssp TTCEEEEECCTTSHHHH---HHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEEESSBB
T ss_pred ccceEEEecCCCCHHHH---HHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHHhhcch
Confidence 56689988864433233 344455689999876544332222222457899999998663 33458999988864
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=86.19 E-value=1.6 Score=33.69 Aligned_cols=75 Identities=11% Similarity=0.129 Sum_probs=46.1
Q ss_pred CCCEEEEEcC-CChHHHHHHHHHHhCCCeEEEEecCCccchhhhh--hhcCCCceEEEEccccccc--cCCCcEEEEccC
Q 024766 115 RRLRIVVTGG-AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLV--HHFRNPRFELIRHDVVEPI--LLEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGa-tG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~--~~~~~~~v~~~~~Dv~~~~--~~~iD~Vi~~Ag 189 (263)
.+.+||-.|+ +|+....+++ +...+..|++++.+++....... +.....++.++.+|..+.. ....|.|+.+++
T Consensus 75 ~g~~VLdiG~GtG~~s~~la~-~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (213)
T d1dl5a1 75 KGMRVLEIGGGTGYNAAVMSR-VVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG 153 (213)
T ss_dssp TTCEEEEECCTTSHHHHHHHH-HHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred ccceEEEecCccchhHHHHHH-HhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccchhhhhhhcc
Confidence 5678998876 4555444444 44444489999876443322211 1124567888888887643 345899998886
Q ss_pred C
Q 024766 190 P 190 (263)
Q Consensus 190 ~ 190 (263)
.
T Consensus 154 ~ 154 (213)
T d1dl5a1 154 V 154 (213)
T ss_dssp B
T ss_pred H
Confidence 4
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.92 E-value=0.84 Score=34.27 Aligned_cols=102 Identities=14% Similarity=0.154 Sum_probs=54.5
Q ss_pred EEEEEcCCChHHHHHHHHHHhC-CCeEEEE-ecCCccchhhhhhhcCCC-ceEEEEcccccc-ccCCCcEEEEccCCCCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDR-GDEVIVI-DNFFTGRKDNLVHHFRNP-RFELIRHDVVEP-ILLEVDQIYHLACPASP 193 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~-G~~V~~l-~r~~~~~~~~~~~~~~~~-~v~~~~~Dv~~~-~~~~iD~Vi~~Ag~~~~ 193 (263)
++.|.| +|.+|+..++.|... +.+|+.+ +++.+ +.+......+.. ... +..|..+- ...++|+|+-+....
T Consensus 3 ki~iIG-~G~~g~~~~~~l~~~~~~~i~ai~d~~~~-~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~iD~v~I~tp~~-- 77 (184)
T d1ydwa1 3 RIGVMG-CADIARKVSRAIHLAPNATISGVASRSLE-KAKAFATANNYPESTK-IHGSYESLLEDPEIDALYVPLPTS-- 77 (184)
T ss_dssp EEEEES-CCTTHHHHHHHHHHCTTEEEEEEECSSHH-HHHHHHHHTTCCTTCE-EESSHHHHHHCTTCCEEEECCCGG--
T ss_pred EEEEEc-CCHHHHHHHHHHHhCCCCEEEEEEeCCcc-ccccchhcccccccee-ecCcHHHhhhccccceeeecccch--
Confidence 688999 689999999988876 5577755 44333 222333332222 222 22233222 124689998765311
Q ss_pred CCCCC-------C----HHHHHHHHHHHHHHHHHHHHHcCCe
Q 024766 194 VHYKY-------N----PVKTIKTNVMGTLNMLGLAKRVGAK 224 (263)
Q Consensus 194 ~~~~~-------~----~~~~~~~Nv~gt~~ll~~a~~~~~~ 224 (263)
.+.+. . .++-+.+|+.-...+++++++.+..
T Consensus 78 ~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~ 119 (184)
T d1ydwa1 78 LHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ 119 (184)
T ss_dssp GHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred hhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence 00000 0 0011135666677888888877643
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.91 E-value=0.85 Score=35.50 Aligned_cols=73 Identities=14% Similarity=0.119 Sum_probs=49.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh-------------------cCCCceEEEEccccc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-------------------FRNPRFELIRHDVVE 175 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~-------------------~~~~~v~~~~~Dv~~ 175 (263)
.+++||..|+.. | ..+..|+++|++|+++|.++........+. .....++++.+|+.+
T Consensus 45 ~~~rvLd~GCG~--G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~ 121 (229)
T d2bzga1 45 SGLRVFFPLCGK--A-VEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD 121 (229)
T ss_dssp CSCEEEETTCTT--C-THHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred CCCEEEEeCCCC--c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence 567999999543 3 367788999999999998765543211110 124578889999876
Q ss_pred ccc---CCCcEEEEccCC
Q 024766 176 PIL---LEVDQIYHLACP 190 (263)
Q Consensus 176 ~~~---~~iD~Vi~~Ag~ 190 (263)
... ...|+|+-.+.+
T Consensus 122 l~~~~~~~fd~i~~~~~l 139 (229)
T d2bzga1 122 LPRTNIGKFDMIWDRGAL 139 (229)
T ss_dssp GGGSCCCCEEEEEESSST
T ss_pred ccccccCceeEEEEEEEE
Confidence 532 347888777654
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=85.86 E-value=0.22 Score=37.38 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=24.5
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEe
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVID 147 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~ 147 (263)
+|+|.| +|++|.+++..|.+.|.+|.++.
T Consensus 5 ~VvIIG-gG~~G~e~A~~l~~~g~~v~i~~ 33 (183)
T d1d7ya1 5 PVVVLG-AGLASVSFVAELRQAGYQGLITV 33 (183)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHHTCCSCEEE
T ss_pred CEEEEC-ccHHHHHHHHHHHhcCCceEEEE
Confidence 588999 79999999999999998655543
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=85.67 E-value=0.44 Score=37.18 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=28.7
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecCC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~ 150 (263)
-|+|.| +|..|...+..|+++|.+|+++.+..
T Consensus 4 DViIIG-aG~aGl~aA~~la~~G~~V~liEk~~ 35 (251)
T d2i0za1 4 DVIVIG-GGPSGLMAAIGAAEEGANVLLLDKGN 35 (251)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 388999 69999999999999999999998754
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=85.55 E-value=1.1 Score=33.04 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=52.0
Q ss_pred EEEEEcCCChHHHH-HHHHHHhC-CCeEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccCCCCCCC
Q 024766 118 RIVVTGGAGFVGSH-LVDKLIDR-GDEVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLACPASPVH 195 (263)
Q Consensus 118 ~vlVTGatG~IG~~-l~~~Ll~~-G~~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag~~~~~~ 195 (263)
+|.|.| +|.+|.. ....+... +.+++.+.-......+...+..+.. ..|..+....++|+|+-+.-.. .+
T Consensus 3 ri~iIG-~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~D~V~I~tp~~--~h 74 (164)
T d1tlta1 3 RIGVVG-LGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIP-----YADSLSSLAASCDAVFVHSSTA--SH 74 (164)
T ss_dssp EEEEEC-CSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCC-----BCSSHHHHHTTCSEEEECSCTT--HH
T ss_pred EEEEEc-CCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccccc-----ccccchhhhhhcccccccccch--hc
Confidence 788999 6999975 45555554 5577766533333333332222221 1233444456899988765211 00
Q ss_pred CCCCHHHH------------HHHHHHHHHHHHHHHHHcCCe
Q 024766 196 YKYNPVKT------------IKTNVMGTLNMLGLAKRVGAK 224 (263)
Q Consensus 196 ~~~~~~~~------------~~~Nv~gt~~ll~~a~~~~~~ 224 (263)
.+ -.... +..|+.-...+++++++.+..
T Consensus 75 ~~-~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~ 114 (164)
T d1tlta1 75 FD-VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT 114 (164)
T ss_dssp HH-HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred cc-cccccccccceeeccccccCCHHHHHHHHHHHHHcCCc
Confidence 00 00000 134555667788888888753
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=84.99 E-value=0.9 Score=33.51 Aligned_cols=35 Identities=20% Similarity=0.153 Sum_probs=29.3
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFF 150 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~ 150 (263)
-+++|+|.| .|.+|...+..+.+.|+ .|+++.|+.
T Consensus 44 ~~~kVvVIG-GGdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 44 IRGAVIVLG-AGDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCSEEEEEC-SSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCCEEEEEC-CChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 456799998 69999999999999998 577887764
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=84.29 E-value=0.48 Score=39.05 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=27.7
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
-++|.| +|.-|..+|.+|++.|.+|+++-+-
T Consensus 6 DviIVG-sG~aG~v~A~~La~~G~kVlvLEaG 36 (379)
T d2f5va1 6 DVVIVG-SGPIGCTYARELVGAGYKVAMFDIG 36 (379)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEEC-cCHHHHHHHHHHhhCCCeEEEEecC
Confidence 478888 7999999999999999999999653
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=84.20 E-value=1.1 Score=33.77 Aligned_cols=72 Identities=17% Similarity=-0.022 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhh--hhhcCCCceEEEEcccccccc-CCCcEEEEccC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNL--VHHFRNPRFELIRHDVVEPIL-LEVDQIYHLAC 189 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~--~~~~~~~~v~~~~~Dv~~~~~-~~iD~Vi~~Ag 189 (263)
.+.+||=.|+ | .|. .+..|+++|++|++++.++....... ....+...+++...|+.+... ...|+|+.+..
T Consensus 30 ~~grvLDiGc-G-~G~-~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~ 104 (198)
T d2i6ga1 30 APGRTLDLGC-G-NGR-NSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVV 104 (198)
T ss_dssp CSCEEEEETC-T-TSH-HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESC
T ss_pred CCCcEEEECC-C-CCH-HHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeee
Confidence 3458998885 3 555 55678889999999998755433221 111133567888888876443 45799987664
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=84.15 E-value=0.29 Score=37.36 Aligned_cols=31 Identities=26% Similarity=0.216 Sum_probs=25.8
Q ss_pred CEEEEEcCCChHHHH-----HHHHHHhCCCeEEEEe
Q 024766 117 LRIVVTGGAGFVGSH-----LVDKLIDRGDEVIVID 147 (263)
Q Consensus 117 k~vlVTGatG~IG~~-----l~~~Ll~~G~~V~~l~ 147 (263)
|+++|||-..++|+. |+..|+++|++|.+++
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id 37 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK 37 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence 689999954499885 6788889999999986
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=83.72 E-value=1.3 Score=34.43 Aligned_cols=70 Identities=23% Similarity=0.224 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhhc--CCCceEEEEcccccccc-CCCcEEEEcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHHF--RNPRFELIRHDVVEPIL-LEVDQIYHLA 188 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~~--~~~~v~~~~~Dv~~~~~-~~iD~Vi~~A 188 (263)
+.++||=.|++. |. ++..|++.|++|++++.++.-.. .+.+.. .+.++.++.+|..+-.+ ...|.|+..-
T Consensus 41 ~~~~iLDiGcGt--G~-~~~~l~~~~~~v~gvD~s~~mi~-~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I~~~~ 113 (251)
T d1wzna1 41 EVRRVLDLACGT--GI-PTLELAERGYEVVGLDLHEEMLR-VARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFF 113 (251)
T ss_dssp CCCEEEEETCTT--CH-HHHHHHHTTCEEEEEESCHHHHH-HHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEEECS
T ss_pred CCCEEEEeCCCC--Cc-cchhhcccceEEEEEeecccccc-ccccccccccccchheehhhhhcccccccchHhhhh
Confidence 345899888543 33 45678889999999998754322 222221 34578999999987544 3579888753
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=83.66 E-value=0.49 Score=39.43 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=27.8
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
-|+|.| +|+-|..+|.+|++.|.+|.++-+-
T Consensus 9 dvIVVG-sG~aG~v~A~rLaeaG~~VlvLEaG 39 (370)
T d3coxa1 9 PALVIG-SGYGGAVAALRLTQAGIPTQIVEMG 39 (370)
T ss_dssp EEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 478888 7999999999999999999999763
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=83.63 E-value=1.2 Score=34.46 Aligned_cols=71 Identities=13% Similarity=-0.068 Sum_probs=47.0
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEccC
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLAC 189 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~Ag 189 (263)
.++.||+|+=.|++.|+ ++..++..|. +|++++.++...+ ...+ +..+++++.+|+.+. -..+|+||.|.-
T Consensus 45 ~dl~Gk~VLDlGcGtG~---l~i~a~~~ga~~V~~vDid~~a~~-~ar~--N~~~~~~~~~D~~~l-~~~fD~Vi~NPP 116 (197)
T d1ne2a_ 45 GNIGGRSVIDAGTGNGI---LACGSYLLGAESVTAFDIDPDAIE-TAKR--NCGGVNFMVADVSEI-SGKYDTWIMNPP 116 (197)
T ss_dssp TSSBTSEEEEETCTTCH---HHHHHHHTTBSEEEEEESCHHHHH-HHHH--HCTTSEEEECCGGGC-CCCEEEEEECCC
T ss_pred CCCCCCEEEEeCCCCcH---HHHHHHHcCCCcccccccCHHHHH-HHHH--ccccccEEEEehhhc-CCcceEEEeCcc
Confidence 35688999988864332 3344666775 7999997644332 2222 235678999998764 367999999864
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=82.90 E-value=0.63 Score=37.63 Aligned_cols=31 Identities=32% Similarity=0.438 Sum_probs=28.4
Q ss_pred EEEEEcCCChHHHHHHHHHHhCCCeEEEEecC
Q 024766 118 RIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 118 ~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~ 149 (263)
-|+|.| +|..|...+.+|+++|.+|+++.+.
T Consensus 18 DVlVIG-~G~aGl~aA~~la~~G~~V~lvEK~ 48 (308)
T d1y0pa2 18 DVVVVG-SGGAGFSAAISATDSGAKVILIEKE 48 (308)
T ss_dssp SEEEEC-CSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCcEEEEecC
Confidence 489999 7999999999999999999999865
|
| >d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.70 E-value=0.46 Score=36.71 Aligned_cols=34 Identities=32% Similarity=0.403 Sum_probs=28.7
Q ss_pred CCEEEEEcCCChHHHH-----HHHHHHhCCCeEEEEecC
Q 024766 116 RLRIVVTGGAGFVGSH-----LVDKLIDRGDEVIVIDNF 149 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~-----l~~~Ll~~G~~V~~l~r~ 149 (263)
+|.|.|+|+-||+|+. |+..|+++|.+|.++|-+
T Consensus 2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D 40 (237)
T d1g3qa_ 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD 40 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 5679999999999884 567788899999999854
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.65 E-value=1.6 Score=34.07 Aligned_cols=76 Identities=16% Similarity=0.099 Sum_probs=51.0
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhh---hhhh----cCCCceEEEEccccccc--cCCCcEEE
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN---LVHH----FRNPRFELIRHDVVEPI--LLEVDQIY 185 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~---~~~~----~~~~~v~~~~~Dv~~~~--~~~iD~Vi 185 (263)
.|.+||-.|+..+--.++..++.....+|+.+++.++-.+.. +.+. .....+.+..+|..+-. ....|.|+
T Consensus 76 ~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~I~ 155 (224)
T d1i1na_ 76 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 155 (224)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhhhh
Confidence 567999999876666667777777666999999865433221 1111 12457788888887543 34589999
Q ss_pred EccCC
Q 024766 186 HLACP 190 (263)
Q Consensus 186 ~~Ag~ 190 (263)
.+++.
T Consensus 156 ~~~~~ 160 (224)
T d1i1na_ 156 VGAAA 160 (224)
T ss_dssp ECSBB
T ss_pred hhcch
Confidence 88864
|
| >d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Cell division regulator MinD species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=82.48 E-value=0.48 Score=36.57 Aligned_cols=35 Identities=29% Similarity=0.353 Sum_probs=29.1
Q ss_pred CCEEEEEcCCChHHHH-----HHHHHHhCCCeEEEEecCC
Q 024766 116 RLRIVVTGGAGFVGSH-----LVDKLIDRGDEVIVIDNFF 150 (263)
Q Consensus 116 ~k~vlVTGatG~IG~~-----l~~~Ll~~G~~V~~l~r~~ 150 (263)
+|.|.|+++-||+|+. |+..|+++|.+|.++|-+.
T Consensus 1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~ 40 (232)
T d1hyqa_ 1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 40 (232)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 5789999999999874 5677888999999998653
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=82.31 E-value=2.4 Score=32.97 Aligned_cols=75 Identities=13% Similarity=0.051 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhh--hhhhcCCCceEEEEcccccc--ccCCCcEEEEccCC
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN--LVHHFRNPRFELIRHDVVEP--ILLEVDQIYHLACP 190 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~--~~~~~~~~~v~~~~~Dv~~~--~~~~iD~Vi~~Ag~ 190 (263)
.+.+||..|+..+=-.+++.+|. |.+|+.+.+.++-.... .....+..++.++.+|..+- .....|.|+-+++.
T Consensus 78 ~g~~VLeIGsGsGY~taila~l~--g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD~Iiv~~a~ 155 (215)
T d1jg1a_ 78 PGMNILEVGTGSGWNAALISEIV--KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYDVIIVTAGA 155 (215)
T ss_dssp TTCCEEEECCTTSHHHHHHHHHH--CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSBB
T ss_pred ccceEEEecCCCChhHHHHHHhh--CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcceeEEeeccc
Confidence 56688888765444455555565 35788888763322111 11122567899999999873 44558999888765
Q ss_pred C
Q 024766 191 A 191 (263)
Q Consensus 191 ~ 191 (263)
.
T Consensus 156 ~ 156 (215)
T d1jg1a_ 156 P 156 (215)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: UDP-Glycosyltransferase/glycogen phosphorylase superfamily: UDP-Glycosyltransferase/glycogen phosphorylase family: Peptidoglycan biosynthesis glycosyltransferase MurG domain: Peptidoglycan biosynthesis glycosyltransferase MurG species: Escherichia coli [TaxId: 562]
Probab=82.27 E-value=0.68 Score=37.54 Aligned_cols=32 Identities=28% Similarity=0.486 Sum_probs=23.3
Q ss_pred CEEEEEcC-CC-hH--HHHHHHHHHhCCCeEEEEec
Q 024766 117 LRIVVTGG-AG-FV--GSHLVDKLIDRGDEVIVIDN 148 (263)
Q Consensus 117 k~vlVTGa-tG-~I--G~~l~~~Ll~~G~~V~~l~r 148 (263)
|+|+|++| || -+ ..+|+++|.++|++|..++.
T Consensus 1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~ 36 (351)
T d1f0ka_ 1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGT 36 (351)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 57777764 43 32 55699999999999988764
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=82.11 E-value=1.2 Score=37.36 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=50.9
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHh-CCC-eEEEEecCCccchhhhhhhcCCCceEEEEccccccccCCCcEEEEcc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLID-RGD-EVIVIDNFFTGRKDNLVHHFRNPRFELIRHDVVEPILLEVDQIYHLA 188 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~-~G~-~V~~l~r~~~~~~~~~~~~~~~~~v~~~~~Dv~~~~~~~iD~Vi~~A 188 (263)
..+++.|.| +|..+..-++.+.. .+. +|.+.+|+.++......+......+.+..++-.++...+.|+|+-+.
T Consensus 127 da~~l~iiG-~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~T 201 (340)
T d1x7da_ 127 NARKMALIG-NGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVT 201 (340)
T ss_dssp TCCEEEEEC-CSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECC
T ss_pred CCceEEEEc-ccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeecc
Confidence 346899999 78999988887765 344 88888887666555444443344677777777777677777776554
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.03 E-value=2.3 Score=33.05 Aligned_cols=40 Identities=15% Similarity=0.020 Sum_probs=33.1
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHHhC--------------------CC-eEEEEecCCcc
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLIDR--------------------GD-EVIVIDNFFTG 152 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll~~--------------------G~-~V~~l~r~~~~ 152 (263)
..+.+++|+|.| .|.++.-+++.+++. |. +|.+++|+...
T Consensus 35 ~~~~gk~VvVIG-gGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~ 95 (225)
T d1cjca1 35 PDLSCDTAVILG-QGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL 95 (225)
T ss_dssp CCTTSSEEEEES-CSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred ccccCceEEEEC-CchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence 346789999999 799999999999983 65 89999987543
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.95 E-value=2.4 Score=32.66 Aligned_cols=40 Identities=28% Similarity=0.269 Sum_probs=32.5
Q ss_pred ccCCCCEEEEEcCCChHHHHHHHHHH--------------------hCCC-eEEEEecCCcc
Q 024766 112 IGRRRLRIVVTGGAGFVGSHLVDKLI--------------------DRGD-EVIVIDNFFTG 152 (263)
Q Consensus 112 ~~~~~k~vlVTGatG~IG~~l~~~Ll--------------------~~G~-~V~~l~r~~~~ 152 (263)
..+.+++|+|+| .|.++.-+++.|+ +.|. +|.+++|+...
T Consensus 35 ~~~~gk~VvVIG-gGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~ 95 (216)
T d1lqta1 35 PDLSGARAVVIG-NGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL 95 (216)
T ss_dssp CCCCSSEEEEEC-CSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred ccccCceEEEEC-CCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence 346789999999 7999999999887 5676 89999987443
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=81.22 E-value=1.8 Score=34.51 Aligned_cols=73 Identities=18% Similarity=0.191 Sum_probs=49.8
Q ss_pred CCCEEEEEcC-CChHHHHHHHHHHhCCCeEEEEecCCccchhh---hhhhcCCCceEEEEcccccccc-CCCcEEEEcc
Q 024766 115 RRLRIVVTGG-AGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDN---LVHHFRNPRFELIRHDVVEPIL-LEVDQIYHLA 188 (263)
Q Consensus 115 ~~k~vlVTGa-tG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~---~~~~~~~~~v~~~~~Dv~~~~~-~~iD~Vi~~A 188 (263)
.|.+|+=.|+ +|++...+++.+...| +|+.++++++..+.. ........++++...|+.+... ..+|.|+...
T Consensus 85 pG~rVLEiG~GsG~lt~~la~~v~~~g-~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld~ 162 (250)
T d1yb2a1 85 PGMDILEVGVGSGNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIADI 162 (250)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEECC
T ss_pred CcCEEEEeeeeCcHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeecC
Confidence 4668888886 5667777777766666 999999875443322 2222245689999999987643 3489998654
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=80.94 E-value=1.9 Score=32.55 Aligned_cols=70 Identities=16% Similarity=-0.000 Sum_probs=45.5
Q ss_pred CEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccchhhhhhh-cCCCceEEEEcccccccc--CCCcEEEEccC
Q 024766 117 LRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGRKDNLVHH-FRNPRFELIRHDVVEPIL--LEVDQIYHLAC 189 (263)
Q Consensus 117 k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~~~~~~~~-~~~~~v~~~~~Dv~~~~~--~~iD~Vi~~Ag 189 (263)
.+||=.|++.|. ++..|++.|.+|+++|.+.+......... .....+..+..|..+..+ ...|+|+....
T Consensus 39 ~~ILDiGcG~G~---~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~ 111 (226)
T d1ve3a1 39 GKVLDLACGVGG---FSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDS 111 (226)
T ss_dssp CEEEEETCTTSH---HHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESC
T ss_pred CEEEEECCCcch---hhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecc
Confidence 478888865544 55677888999999997644332211111 134567788888877543 45899987764
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=80.72 E-value=1.7 Score=32.00 Aligned_cols=36 Identities=14% Similarity=-0.020 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCChHHHHHHHHHHhCCCeEEEEecCCccc
Q 024766 115 RRLRIVVTGGAGFVGSHLVDKLIDRGDEVIVIDNFFTGR 153 (263)
Q Consensus 115 ~~k~vlVTGatG~IG~~l~~~Ll~~G~~V~~l~r~~~~~ 153 (263)
.+++||..|++-+ . .+..|+++|++|+++|.+....
T Consensus 20 ~~~rvLd~GCG~G--~-~a~~la~~G~~V~gvD~S~~~i 55 (201)
T d1pjza_ 20 PGARVLVPLCGKS--Q-DMSWLSGQGYHVVGAELSEAAV 55 (201)
T ss_dssp TTCEEEETTTCCS--H-HHHHHHHHCCEEEEEEECHHHH
T ss_pred CCCEEEEecCcCC--H-HHHHHHHcCCceEeecccHHHH
Confidence 5679999996433 3 6668888999999999875543
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.53 E-value=2.6 Score=34.42 Aligned_cols=72 Identities=18% Similarity=0.052 Sum_probs=46.3
Q ss_pred CCCCEEEEEcCCChHHHHHHHHHHhCCC-eEEEEecCCccchh--hhhhhcCCCceEEEEcccccccc--CCCcEEEEcc
Q 024766 114 RRRLRIVVTGGAGFVGSHLVDKLIDRGD-EVIVIDNFFTGRKD--NLVHHFRNPRFELIRHDVVEPIL--LEVDQIYHLA 188 (263)
Q Consensus 114 ~~~k~vlVTGatG~IG~~l~~~Ll~~G~-~V~~l~r~~~~~~~--~~~~~~~~~~v~~~~~Dv~~~~~--~~iD~Vi~~A 188 (263)
+++++||-.|++.|+ ++..+++.|+ +|++++.++..... .....--..++.++.+|+.+..+ ..+|+|+..-
T Consensus 32 ~~~~~VLDiGcG~G~---ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~ 108 (316)
T d1oria_ 32 FKDKVVLDVGSGTGI---LCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW 108 (316)
T ss_dssp HTTCEEEEETCTTSH---HHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred CCcCEEEEEecCCcH---HHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeee
Confidence 468899999864443 4556777786 79999876432111 11111124569999999988654 4589998754
|
| >d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: YxiM C-terminal domain-like domain: Hypothetical protein YxiM species: Bacillus subtilis [TaxId: 1423]
Probab=80.06 E-value=3.1 Score=31.04 Aligned_cols=51 Identities=14% Similarity=0.063 Sum_probs=31.7
Q ss_pred CCCcEEEEccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCeEEEEcCcc
Q 024766 179 LEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGAKFLLTSTSE 232 (263)
Q Consensus 179 ~~iD~Vi~~Ag~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~iV~vSS~~ 232 (263)
...|+||-+.|............+.+..|+. .+++.+++.+.++|+++...
T Consensus 70 ~~~D~vvi~~G~ND~~~~~~~~~~~~~~~l~---~li~~~~~~~~~~vl~~~~~ 120 (208)
T d2o14a2 70 KPGDYFMLQLGINDTNPKHKESEAEFKEVMR---DMIRQVKAKGADVILSTPQG 120 (208)
T ss_dssp CTTCEEEEECCTGGGCGGGCCCHHHHHHHHH---HHHHHHHTTTCEEEEECCCC
T ss_pred CCCCEEEEEcCCCcccccccccHHHHHHHHH---HHHHHHHhcCCceeeccccc
Confidence 3468988888754433223334455555555 56777777777888887643
|