Citrus Sinensis ID: 024775

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
METILTTTASKLTIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFFS
Secondary Structure (PSIPRED)
cccHHcccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccEEEEEEccccccccEEEEccccccccccccEEEEEEEEEccHHHHHHHccccccccccccccccccccEEEEEEcccccccccccEEEEEcccccccccccccccEEEEcccccccccccccccHHHHHHccHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHcccEEEc
Secondary Structure Prediction (SSPRO)
ccEHEEcccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHEEEEEEEccccccEEEEEccccccccccccEEEEEEEEEEccccHHHHcccccccccccccccccccEEEEEEEcccccccccccEEEEcccccccccccccccEEEEEEEcHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHcccEEEc
Coil and Loop (DISEMBL)
metiltttASKLTIFHSIsstklnsfsrkfsvgfsgnknrkkvttlkqgsfsylplgvqasasqaaassteaeptkvgtvpseMKAWLYgeyggvdvlkfdekvtvpqvkedQVLIKVVAAAlnpvdgkrrqgkfkatdsplptvpgydvaGVVVKVGTqvkefkegdevygdinekalegpkqfgslAEYTAVEERllapkpknldfvqAAGLPLAIETAYEGLertgfsagKSILVlngsggvgSLVIQVCYYYLEFFFS
Flexible Loop (DISEMBL)
metiltttaskltifhsisstklnsfsrkfsvgfsgnknrkkvTTLKQGSFSYLPLGVQASASQAAAssteaeptkvgtvpSEMKAWLYGEYGGVDVLKFDEKVTVpqvkedqvLIKVVAAalnpvdgkrrqgkfkatdsplptvpgydvagVVVKVGTqvkefkegdevYGDINEKalegpkqfGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFFS
Low Complexity Region (SEG)
METILTTTASKLTIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVqasasqaaassTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTvpgydvagvvvkvgtqvKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKsilvlngsggvgslviQVCYYYLEFFFS
Disordered region (IsUnstruct)
*********SKLTIFHSISSTKL**F***FSV******************FSYL*****************************MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVD**************LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF*
Disordered Region (DISOPRED)
********ASKLTIFH******************************************************************EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFFS
Disordered Region (DISEMBL)
METILTTTASKLTIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGV********************TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFFS
Disordered Region (DISPRO)
*ETILTTTASKLTIFHSISSTKLNSFSRKFSVGFS******************************************GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFFS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
METILTTTASKLTIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q9ZUC1	386	Quinone oxidoreductase-li	yes	no	0.679	0.461	0.797	3e-79
Q0VC50	396	Reticulon-4-interacting p	yes	no	0.614	0.406	0.347	3e-23
Q8WWV3	396	Reticulon-4-interacting p	yes	no	0.614	0.406	0.352	1e-22
Q7T3C7	387	Reticulon-4-interacting p	yes	no	0.622	0.421	0.372	3e-22
Q924D0	396	Reticulon-4-interacting p	yes	no	0.622	0.411	0.345	6e-22
Q8CRJ7	336	Zinc-type alcohol dehydro	yes	no	0.538	0.419	0.405	5e-21
Q8H0M1	329	Quinone-oxidoreductase ho	N/A	no	0.622	0.495	0.376	5e-21
Q5HM44	336	Zinc-type alcohol dehydro	yes	no	0.538	0.419	0.405	7e-21
O97764	330	Zeta-crystallin OS=Bos ta	no	no	0.625	0.496	0.379	2e-20
Q28452	330	Quinone oxidoreductase OS	N/A	no	0.629	0.5	0.374	5e-20

>sp|Q9ZUC1|QORL_ARATH Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2

 Score =  295 bits (754), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 142/178 (79%), Positives = 160/178 (89%)

Query: 78  GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA 137
            ++P EMKAW+Y +YGGVDVLK +  + VP++KEDQVLIKVVAAALNPVD KRRQGKFKA
Sbjct: 72  ASIPKEMKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKA 131

Query: 138 TDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEER 197
           TDSPLPTVPGYDVAGVVVKVG+ VK+ KEGDEVY +++EKALEGPKQFGSLAEYTAVEE+
Sbjct: 132 TDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEK 191

Query: 198 LLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYY 255
           LLA KPKN+DF QAAGLPLAIETA EGL RT FSAGKSILVLNG+GGVGSLVIQ+  +
Sbjct: 192 LLALKPKNIDFAQAAGLPLAIETADEGLVRTEFSAGKSILVLNGAGGVGSLVIQLAKH 249

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q0VC50|RT4I1_BOVIN Reticulon-4-interacting protein 1, mitochondrial OS=Bos taurus GN=RTN4IP1 PE=2 SV=1

 Score =  108 bits (271), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 101/190 (53%), Gaps = 29/190 (15%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQG--------- 133
           M AW+  +YG  +VL+F + + +P +   ++V+IKV AA++NP+D   R G         
Sbjct: 43  MPAWVIDKYGSNEVLRFTQNMMIPMIHYPNEVIIKVHAASINPIDVNMRSGYGATALNMK 102

Query: 134 ------KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGS 187
                 K K  + PL    G DV+GVV++ G  V+ FK GDEV+  +       P + G+
Sbjct: 103 RDPLHVKIKGEEFPLTL--GRDVSGVVMECGLDVRYFKPGDEVWAAVP------PWKQGT 154

Query: 188 LAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-----FSAGKSILVLNGS 242
           L+E+  V    ++ KP++L   QAA LP    TA+  + + G        GK +L+L  S
Sbjct: 155 LSEFVVVSGNEVSHKPRSLTHTQAASLPYVALTAWSAINKVGGLNDRNCTGKRVLILGAS 214

Query: 243 GGVGSLVIQV 252
           GGVG+  IQV
Sbjct: 215 GGVGTFAIQV 224

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Bos taurus (taxid: 9913)

>sp|Q8WWV3|RT4I1_HUMAN Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1 SV=2

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 101/190 (53%), Gaps = 29/190 (15%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQG--------- 133
           M AW+  +YG  +VL+F + + +P +   ++V++KV AA++NP+D   R G         
Sbjct: 43  MPAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMK 102

Query: 134 ------KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGS 187
                 K K  + PL    G DV+GVV++ G  VK FK GDEV+  +       P + G+
Sbjct: 103 RDPLHVKIKGEEFPLTL--GRDVSGVVMECGLDVKYFKPGDEVWAAVP------PWKQGT 154

Query: 188 LAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-----FSAGKSILVLNGS 242
           L+E+  V    ++ KPK+L   QAA LP    TA+  + + G        GK +L+L  S
Sbjct: 155 LSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGAS 214

Query: 243 GGVGSLVIQV 252
           GGVG+  IQV
Sbjct: 215 GGVGTFAIQV 224

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Homo sapiens (taxid: 9606)

>sp|Q7T3C7|RT4I1_DANRE Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Danio rerio GN=rtn4ip1 PE=2 SV=2

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/188 (37%), Positives = 101/188 (53%), Gaps = 25/188 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKAT---- 138
           M AW+  +YG  DVL+F +   +P +   ++V++KV AA LNP+D   R G   AT    
Sbjct: 29  MPAWVIDKYGKNDVLRFTKNAALPIIHYPNEVVVKVHAAGLNPIDISMRGGYGAATMAMK 88

Query: 139 DSPL---------PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLA 189
             PL         P + G DV+G +++ G  VK FK GD+V+  I       P + GSLA
Sbjct: 89  RDPLNISQSGGEFPLILGRDVSGEIMECGLDVKYFKPGDQVWAAIP------PWKQGSLA 142

Query: 190 EYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-----FSAGKSILVLNGSGG 244
           E+  V    ++ KPK+L   +AA +P    TA+  +  TG      SA K +L+L GSGG
Sbjct: 143 EFVVVSGNEVSHKPKSLRHDEAASIPYVAATAWSAIVNTGGLNKDNSAKKRVLILGGSGG 202

Query: 245 VGSLVIQV 252
           VG+  IQ+
Sbjct: 203 VGTFAIQM 210

May be a potent inhibitor of regeneration.

Danio rerio (taxid: 7955)

>sp|Q924D0|RT4I1_MOUSE Reticulon-4-interacting protein 1, mitochondrial OS=Mus musculus GN=Rtn4ip1 PE=1 SV=2

 Score =  104 bits (260), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 97/188 (51%), Gaps = 25/188 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQG--------- 133
           M AW+  +YG  +VL+F + + +P +   ++V+IKV AA++NP+D   R G         
Sbjct: 43  MPAWVIDKYGKNEVLRFTQNMMLPIIHYPNEVIIKVHAASVNPIDVNMRSGYGATALNMK 102

Query: 134 ----KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLA 189
                 K      P   G DV+GVV++ G  VK F+ GDEV+  +       P + G+L+
Sbjct: 103 RDPLHMKTKGEEFPLTLGRDVSGVVMECGLDVKYFQPGDEVWAAVP------PWKQGTLS 156

Query: 190 EYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-----FSAGKSILVLNGSGG 244
           E+  V    ++ KPK+L   QAA LP    TA+  + + G        GK  L+L  SGG
Sbjct: 157 EFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLSDKNCKGKRALILGASGG 216

Query: 245 VGSLVIQV 252
           VG+  IQV
Sbjct: 217 VGTFAIQV 224

Appears to be a potent inhibitor of regeneration following spinal cord injury.

Mus musculus (taxid: 10090)

>sp|Q8CRJ7|ZDH1_STAES Zinc-type alcohol dehydrogenase-like protein SE_1777 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1777 PE=3 SV=1

 Score =  101 bits (252), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 88/158 (55%), Gaps = 17/158 (10%)

Query: 106 VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFK 165
           +P     ++L+KV + ++NPVD K+R          +P V G+D  GV+ K+G QV  F+
Sbjct: 25  IPHPSGHELLVKVQSISVNPVDTKQRTMPV----DKVPRVLGFDAVGVIEKIGDQVSMFQ 80

Query: 166 EGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225
           EGD V+          P Q GS  EY  +EE L+A  P NL   QAA LPL   TAYE L
Sbjct: 81  EGDVVFYS------GSPNQNGSNEEYQLIEEYLVAKAPTNLKSEQAASLPLTGLTAYETL 134

Query: 226 -ERTGFS------AGKSILVLNGSGGVGSLVIQVCYYY 256
            +  G S       GKS+L++NG+GGVGS+  Q+  +Y
Sbjct: 135 FDVFGISKEPSENKGKSLLIINGAGGVGSIATQIAKFY 172

Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280)

>sp|Q8H0M1|QORH_SPIOL Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1

 Score =  101 bits (251), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 94/178 (52%), Gaps = 15/178 (8%)

Query: 84  MKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-DSP 141
           M A  Y  YGG  D LK  E V VP  K D++L+K+ AA LNP+D K ++G  +      
Sbjct: 6   MHAIQYSGYGGGTDALKHVE-VAVPDPKSDELLLKIEAATLNPIDWKIQKGVLRPLLPRK 64

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAP 201
            PT+PG DVAG VV+ G+ V  FK GD+V   ++          G+LAEY   +E L   
Sbjct: 65  FPTIPGTDVAGEVVQAGSAVNRFKTGDKVVAVLSHAT------GGALAEYAVAKENLTVA 118

Query: 202 KPKNLDFVQAAGLPLAIETAYEGLER------TGFSAGKSILVLNGSGGVGSLVIQVC 253
           +P  +   + A LP+A  TA++ L +       G    K+IL+   SGGVG   +Q+ 
Sbjct: 119 RPPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGERKNILITAASGGVGHYAVQLA 176

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5HM44|ZDH1_STAEQ Zinc-type alcohol dehydrogenase-like protein SERP1785 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1785 PE=3 SV=1

 Score =  101 bits (251), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 87/158 (55%), Gaps = 17/158 (10%)

Query: 106 VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFK 165
           +P     ++L+KV + ++NPVD K+R           P V G+D  GV+ K+G QV  F+
Sbjct: 25  IPHPSGHELLVKVQSISVNPVDTKQRTMPVDKA----PRVLGFDAVGVIEKIGDQVSMFQ 80

Query: 166 EGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225
           EGD V+          P Q GS  EY  +EE L+A  P NL   QAA LPL   TAYE L
Sbjct: 81  EGDVVFYS------GSPNQNGSNEEYQLIEEYLVAKAPTNLKSEQAASLPLTGLTAYETL 134

Query: 226 -ERTGFS------AGKSILVLNGSGGVGSLVIQVCYYY 256
            +  G S       GKS+L++NG+GGVGS+  Q+  +Y
Sbjct: 135 FDVFGISKEPSENKGKSLLIINGAGGVGSIATQIAKFY 172

Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279)

>sp|O97764|QOR_BOVIN Zeta-crystallin OS=Bos taurus GN=CRYZ PE=2 SV=2

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 87/174 (50%), Gaps = 10/174 (5%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A    E+GG +VLK    V VP  K+ QVLIKV A  +NPVD   R G        LP
Sbjct: 8   MRAIRVFEFGGPEVLKLQSDVAVPIPKDHQVLIKVQACGVNPVDTYIRSGTHN-IKPLLP 66

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
             PG+DVAG++  VG  V  FK+GD V+     + +      G  AEY    +  +   P
Sbjct: 67  YTPGFDVAGIIEAVGESVSAFKKGDRVF---TTRTIS-----GGYAEYALAADHTVYTLP 118

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQVCYYY 256
           + LDF Q A + +   TAY  L  +     G+S+LV   SGGVG    Q+   Y
Sbjct: 119 EKLDFKQGAAIGIPYFTAYRALLHSACVKPGESVLVHGASGGVGIAACQIARAY 172

Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding (By similarity). Has minimal or no quinone reductase activity. Binds strongly to single-stranded DNA.

Bos taurus (taxid: 9913)

>sp|Q28452|QOR_LAMGU Quinone oxidoreductase OS=Lama guanicoe GN=CRYZ PE=2 SV=1

 Score = 98.2 bits (243), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/179 (37%), Positives = 90/179 (50%), Gaps = 14/179 (7%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A    E+GG +VLK    V VP  +E QVLIKV A  +NPVD   R G + +    LP
Sbjct: 8   MRAIRVSEFGGPEVLKLQSDVAVPIPEEHQVLIKVQACGVNPVDTYIRSGTY-SRKPRLP 66

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
             PG DVAG++  VG +V  FK+GD V+              G  AEY    +  +   P
Sbjct: 67  YTPGLDVAGLIEAVGERVSAFKKGDRVFTTSTVS--------GGYAEYALAADHTVYKLP 118

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQV----CYYYL 257
             LDF + A + +   TAY  L  +  + AG+S+LV   SGGVG    Q+    C+  L
Sbjct: 119 GELDFQKGAAIGVPYFTAYRALLHSACAKAGESVLVHGASGGVGLAACQIARACCFKVL 177

Does not have alcohol dehydrogenase activity. Binds NADP and acts through a one-electron transfer process. Orthoquinones, such as 1,2-naphthoquinone or 9,10-phenanthrenequinone, are the best substrates (in vitro). May act in the detoxification of xenobiotics. Interacts with (AU)-rich elements (ARE) in the 3'-UTR of target mRNA species and enhances their stability. NADPH binding interferes with mRNA binding.

Lama guanicoe (taxid: 9840)

EC: 1

EC: .

EC: 6

EC: .

EC: 5

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
255568816	389	alcohol dehydrogenase, putative [Ricinus	0.938	0.632	0.770	2e-99
388495252	387	unknown [Lotus japonicus]	0.938	0.635	0.715	2e-94
118488941	383	unknown [Populus trichocarpa x Populus d	0.931	0.637	0.743	2e-93
307135978	383	alcohol dehydrogenase [Cucumis melo subs	0.927	0.634	0.712	3e-89
356526809	397	PREDICTED: quinone oxidoreductase-like p	0.854	0.564	0.764	4e-89
255635588	295	unknown [Glycine max]	0.854	0.759	0.759	1e-88
449478569	383	PREDICTED: quinone oxidoreductase-like p	0.927	0.634	0.704	3e-88
310747931	383	chloroplastic alkenal/one oxidoreductase	0.927	0.634	0.704	4e-88
449434925	383	PREDICTED: quinone oxidoreductase-like p	0.927	0.634	0.704	4e-88
356567630	395	PREDICTED: quinone oxidoreductase-like p	0.851	0.564	0.763	3e-87

>gi|255568816|ref|XP_002525379.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223535342|gb|EEF37017.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  367 bits (943), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 195/253 (77%), Positives = 217/253 (85%), Gaps = 7/253 (2%)

Query: 6   TTTASKLTIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFS---YLPLGVQASA 62
           T T  KLT FHS+SS     FS +F+  F  N +RKK   L+Q S S   ++PL V A+ 
Sbjct: 4   TITNPKLTPFHSLSSNLSPPFSLRFAPTFPEN-SRKKPNFLRQSSSSSLSHIPLRVSAN- 61

Query: 63  SQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAA 122
           SQAA +ST+A  TK+ ++PSEMKAW+YGEYGGVDVLKFDEKV+VP+VKEDQVLIKVVAAA
Sbjct: 62  SQAAPASTQA--TKISSLPSEMKAWVYGEYGGVDVLKFDEKVSVPEVKEDQVLIKVVAAA 119

Query: 123 LNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGP 182
           LNPVD KRRQGKFKATDSPLPTVPGYDVAG+VVKVG++VKE KEGDEVYGDINEKALEGP
Sbjct: 120 LNPVDAKRRQGKFKATDSPLPTVPGYDVAGIVVKVGSKVKELKEGDEVYGDINEKALEGP 179

Query: 183 KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGS 242
           KQFGSLAEYTAVEE+LLA KPKNLDFVQAA LPLAIETAYEGLERTGFSAGKSILVLNGS
Sbjct: 180 KQFGSLAEYTAVEEKLLALKPKNLDFVQAASLPLAIETAYEGLERTGFSAGKSILVLNGS 239

Query: 243 GGVGSLVIQVCYY 255
           GGVGSLVIQ+  +
Sbjct: 240 GGVGSLVIQLAKH 252

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495252|gb|AFK35692.1| unknown [Lotus japonicus]

 Score =  351 bits (901), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 181/253 (71%), Positives = 203/253 (80%), Gaps = 7/253 (2%)

Query: 1   METILTTTASKLTIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQA 60
           +   L++T S LTI  S+ ++  +  SR+FS  F  N+N    TTL    F Y    +  
Sbjct: 3   LSAALSSTTSHLTILPSLITSTTSPLSRRFSFTFLENRNPTTTTTL----FPYKQRLLVK 58

Query: 61  SASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVA 120
           S + A ASS   E  KV  VPSEMKAW+YGEYGGVDVLKFD  V VP +KEDQVL++VVA
Sbjct: 59  SQATAPASS---EAVKVSPVPSEMKAWVYGEYGGVDVLKFDSNVAVPDLKEDQVLVRVVA 115

Query: 121 AALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALE 180
           AALNPVD KRRQGKFKATDSPLPTVPGYDVAGVVVKVG++VKEF+ GDEVYGD+NEKALE
Sbjct: 116 AALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSEVKEFRVGDEVYGDVNEKALE 175

Query: 181 GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN 240
           GPKQFGSLAEYTAVEE+LLAPKPKNLDF QAA LPLAIETAYEGLERTGFS+GKSILVLN
Sbjct: 176 GPKQFGSLAEYTAVEEKLLAPKPKNLDFAQAASLPLAIETAYEGLERTGFSSGKSILVLN 235

Query: 241 GSGGVGSLVIQVC 253
           GSGGVGSLVIQ+ 
Sbjct: 236 GSGGVGSLVIQLA 248

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488941|gb|ABK96279.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 191/257 (74%), Positives = 211/257 (82%), Gaps = 13/257 (5%)

Query: 1   METILTTTASKLTIFH-SISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQ-GSFSYLPLGV 58
           MET +TT   KLT  H  ISS   NSFS  FS+ F      KK   +K   S S++PL V
Sbjct: 1   METTMTTAVPKLTTLHPRISS---NSFSLIFSLTFPA----KKTALVKHTCSPSHIPLRV 53

Query: 59  QASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKV 118
            AS+   AA+    E TKV ++PSEMKA +YGEYGGV+VLKFD+KV+VP+VKEDQVLIKV
Sbjct: 54  SASSQSQAAA----EATKVSSIPSEMKACVYGEYGGVEVLKFDDKVSVPEVKEDQVLIKV 109

Query: 119 VAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKA 178
           VAAALNPVD KRRQGKFKATDSPLPTVPGYDVAGVVVKVG QVKE KEGD VYG+INEKA
Sbjct: 110 VAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGNQVKELKEGDAVYGNINEKA 169

Query: 179 LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILV 238
           LEGPKQFGSLAEYTAVEE+LLA KPKNLDF+QAAGLPLAIETAYEGLERTGFSAGKSILV
Sbjct: 170 LEGPKQFGSLAEYTAVEEKLLALKPKNLDFIQAAGLPLAIETAYEGLERTGFSAGKSILV 229

Query: 239 LNGSGGVGSLVIQVCYY 255
           LNG+GGVGSLVIQ+  +
Sbjct: 230 LNGAGGVGSLVIQLAKH 246

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307135978|gb|ADN33837.1| alcohol dehydrogenase [Cucumis melo subsp. melo]

 Score =  333 bits (855), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 181/254 (71%), Positives = 203/254 (79%), Gaps = 11/254 (4%)

Query: 1   METILTTTASKL-TIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQ 59
           M  IL +T S+L + +HSISS    SFS           NRK  T     + S + L V 
Sbjct: 1   MAAILPSTPSQLKSHYHSISSKFCPSFSLSLR-----QSNRK--TIGYSPASSRIRLRVF 53

Query: 60  ASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVV 119
           A++  A AS   +E   V +VPSEMKAW+YGEYGGVDVLKFD  V+VP+VKEDQVLIKVV
Sbjct: 54  ANSQSAPASVVTSE---VASVPSEMKAWVYGEYGGVDVLKFDTSVSVPEVKEDQVLIKVV 110

Query: 120 AAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKAL 179
           AAALNPVDGKR  GKFKATDSPLPTVPGYDVAGVVVKVG+QVKE KEGDEVYG+INEKAL
Sbjct: 111 AAALNPVDGKRMLGKFKATDSPLPTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKAL 170

Query: 180 EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
           +GPKQFGSLAEYTAVEE+LLA KPKN+DF+QAAGLPLAIETAYEGLE+T FSAGKSILVL
Sbjct: 171 DGPKQFGSLAEYTAVEEKLLALKPKNIDFIQAAGLPLAIETAYEGLEKTNFSAGKSILVL 230

Query: 240 NGSGGVGSLVIQVC 253
           NG+GGVGSLVIQ+ 
Sbjct: 231 NGAGGVGSLVIQLA 244

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526809|ref|XP_003532009.1| PREDICTED: quinone oxidoreductase-like protein At1g23740, chloroplastic-like [Glycine max]

 Score =  333 bits (855), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 175/229 (76%), Positives = 187/229 (81%), Gaps = 5/229 (2%)

Query: 28  RKFSVGFSGNKNRKKVTTLKQGSF---SYLPLGVQASASQAAASSTEAEPTKVGTVPSEM 84
           RKFS+ F   KNR  +    +  F      P  V    SQA A ++ +E  KV  VPSEM
Sbjct: 32  RKFSLTFR-EKNRTPIAPPHKLPFFSARPAPTRVVLVKSQATAPAS-SEAVKVTPVPSEM 89

Query: 85  KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPT 144
           KAW+YGEYGGVDVLK D  V VP VKEDQVLIKVVAAALNPVD KRRQGKFKATDSPLPT
Sbjct: 90  KAWVYGEYGGVDVLKLDSNVAVPDVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPT 149

Query: 145 VPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPK 204
           VPGYDVAGVVVKVG+QVK+FK GDEVYGD+NEKALEGPKQFGSLAEYTAVEE+LLAPKPK
Sbjct: 150 VPGYDVAGVVVKVGSQVKDFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLAPKPK 209

Query: 205 NLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVC 253
           NLDF QAA LPLAIETAYEGLERTGFS GKSILVLNGSGGVGSLVIQ+ 
Sbjct: 210 NLDFAQAASLPLAIETAYEGLERTGFSPGKSILVLNGSGGVGSLVIQLA 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255635588|gb|ACU18144.1| unknown [Glycine max]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 174/229 (75%), Positives = 186/229 (81%), Gaps = 5/229 (2%)

Query: 28  RKFSVGFSGNKNRKKVTTLKQGSF---SYLPLGVQASASQAAASSTEAEPTKVGTVPSEM 84
           RKFS+ F   KNR  +    +  F      P  V    SQA A ++ +E  KV  VPSE 
Sbjct: 32  RKFSLTFR-EKNRTPIAPPHKLPFFSARPAPTRVVLVKSQATAPAS-SEAVKVTPVPSET 89

Query: 85  KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPT 144
           KAW+YGEYGGVDVLK D  V VP VKEDQVLIKVVAAALNPVD KRRQGKFKATDSPLPT
Sbjct: 90  KAWVYGEYGGVDVLKLDSNVAVPDVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPT 149

Query: 145 VPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPK 204
           VPGYDVAGVVVKVG+QVK+FK GDEVYGD+NEKALEGPKQFGSLAEYTAVEE+LLAPKPK
Sbjct: 150 VPGYDVAGVVVKVGSQVKDFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLAPKPK 209

Query: 205 NLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVC 253
           NLDF QAA LPLAIETAYEGLERTGFS GKSILVLNGSGGVGSLVIQ+ 
Sbjct: 210 NLDFAQAASLPLAIETAYEGLERTGFSPGKSILVLNGSGGVGSLVIQLA 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478569|ref|XP_004155355.1| PREDICTED: quinone oxidoreductase-like protein At1g23740, chloroplastic-like [Cucumis sativus]

 Score =  330 bits (847), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 179/254 (70%), Positives = 200/254 (78%), Gaps = 11/254 (4%)

Query: 1   METILTTTASKL-TIFHSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQ 59
           M  IL +T S+L + +H ISS    SFS           NRK +      S   + L V 
Sbjct: 1   MAAILASTPSQLNSYYHFISSKLCPSFSLSLR-----QSNRKTIGYSPVSS--RIRLRVF 53

Query: 60  ASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVV 119
           A++  A AS   +E   V +VPSEMKAW+YGEYGGVDVLKFD  V+VP+VKEDQVLIKVV
Sbjct: 54  ANSQSAPASVVTSE---VASVPSEMKAWVYGEYGGVDVLKFDSSVSVPEVKEDQVLIKVV 110

Query: 120 AAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKAL 179
           AAALNPVDGKR  GKFKATDSPLPTVPGYDVAGVVVKVG+QVKE KEGDEVYG+INEKAL
Sbjct: 111 AAALNPVDGKRMLGKFKATDSPLPTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKAL 170

Query: 180 EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
           +GPKQFGSLAEYTAVEE+LLA KPKN+DFVQAAGLPLAIETAYEGLE+T FS GKSILVL
Sbjct: 171 DGPKQFGSLAEYTAVEEKLLAVKPKNIDFVQAAGLPLAIETAYEGLEKTNFSTGKSILVL 230

Query: 240 NGSGGVGSLVIQVC 253
           NG+GGVGSLVIQ+ 
Sbjct: 231 NGAGGVGSLVIQLA 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310747931|dbj|BAJ23910.1| chloroplastic alkenal/one oxidoreductase [Cucumis sativus]

 Score =  330 bits (846), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 179/254 (70%), Positives = 199/254 (78%), Gaps = 11/254 (4%)

Query: 1   METILTTTASKLTIF-HSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQ 59
           M  IL +T S+L  + H ISS    SFS           NRK +      S   + L V 
Sbjct: 1   MAAILASTPSQLNSYCHFISSKLCPSFSLSLR-----QSNRKTIGYSPVSS--RIRLRVF 53

Query: 60  ASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVV 119
           A++  A AS   +E   V +VPSEMKAW+YGEYGGVDVLKFD  V+VP+VKEDQVLIKVV
Sbjct: 54  ANSQSAPASVVTSE---VASVPSEMKAWVYGEYGGVDVLKFDSSVSVPEVKEDQVLIKVV 110

Query: 120 AAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKAL 179
           AAALNPVDGKR  GKFKATDSPLPTVPGYDVAGVVVKVG+QVKE KEGDEVYG+INEKAL
Sbjct: 111 AAALNPVDGKRMLGKFKATDSPLPTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKAL 170

Query: 180 EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
           +GPKQFGSLAEYTAVEE+LLA KPKN+DFVQAAGLPLAIETAYEGLE+T FS GKSILVL
Sbjct: 171 DGPKQFGSLAEYTAVEEKLLAVKPKNIDFVQAAGLPLAIETAYEGLEKTNFSTGKSILVL 230

Query: 240 NGSGGVGSLVIQVC 253
           NG+GGVGSLVIQ+ 
Sbjct: 231 NGAGGVGSLVIQLA 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434925|ref|XP_004135246.1| PREDICTED: quinone oxidoreductase-like protein At1g23740, chloroplastic-like [Cucumis sativus]

 Score =  330 bits (846), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 179/254 (70%), Positives = 199/254 (78%), Gaps = 11/254 (4%)

Query: 1   METILTTTASKLTIF-HSISSTKLNSFSRKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQ 59
           M  IL +T S+L  + H ISS    SFS           NRK +      S   + L V 
Sbjct: 1   MAAILASTPSQLNSYCHFISSKLCPSFSLSLR-----QSNRKTIGYSPVSS--RIRLRVF 53

Query: 60  ASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVV 119
           A++  A AS   +E   V +VPSEMKAW+YGEYGGVDVLKFD  V+VP+VKEDQVLIKVV
Sbjct: 54  ANSQSAPASVVTSE---VASVPSEMKAWVYGEYGGVDVLKFDSSVSVPEVKEDQVLIKVV 110

Query: 120 AAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKAL 179
           AAALNPVDGKR  GKFKATDSPLPTVPGYDVAGVVVKVG+QVKE KEGDEVYG+INEKAL
Sbjct: 111 AAALNPVDGKRMLGKFKATDSPLPTVPGYDVAGVVVKVGSQVKELKEGDEVYGNINEKAL 170

Query: 180 EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
           +GPKQFGSLAEYTAVEE+LLA KPKN+DFVQAAGLPLAIETAYEGLE+T FS GKSILVL
Sbjct: 171 DGPKQFGSLAEYTAVEEKLLAVKPKNIDFVQAAGLPLAIETAYEGLEKTNFSTGKSILVL 230

Query: 240 NGSGGVGSLVIQVC 253
           NG+GGVGSLVIQ+ 
Sbjct: 231 NGAGGVGSLVIQLA 244

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567630|ref|XP_003552020.1| PREDICTED: quinone oxidoreductase-like protein At1g23740, chloroplastic-like [Glycine max]

 Score =  327 bits (838), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 174/228 (76%), Positives = 186/228 (81%), Gaps = 5/228 (2%)

Query: 28  RKFSVGFSGNKNRKKVTTLKQGSFSYLPLGVQAS--ASQAAASSTEAEPTKVGTVPSEMK 85
           RKF + F   KNR  +T  K   FS  P   +     SQA A ++ +E   V  V SEMK
Sbjct: 32  RKFPLTFR-EKNRTPITPHKL-PFSARPTTTRVVLVKSQATAPAS-SEAVAVTPVSSEMK 88

Query: 86  AWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTV 145
           AW+YGEYGGVDVLK D  VTVP VKEDQVLIKVVAAALNPVD KRRQGKFKATDSPLPTV
Sbjct: 89  AWVYGEYGGVDVLKLDSNVTVPDVKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTV 148

Query: 146 PGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKN 205
           PGYDVAGVVVKVG+QVK+FK GDEVYGD+NEKALEGPKQFGSLAEYTAVEE+LLA KPKN
Sbjct: 149 PGYDVAGVVVKVGSQVKDFKVGDEVYGDVNEKALEGPKQFGSLAEYTAVEEKLLASKPKN 208

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVC 253
           LDF QAA LPLAIETAYEGLERTGFS GKSILVLNGSGGVGSLVIQ+ 
Sbjct: 209 LDFAQAAALPLAIETAYEGLERTGFSPGKSILVLNGSGGVGSLVIQLA 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2034802	386	AOR "alkenal/one oxidoreductas	0.610	0.414	0.7	2.3e-55
TIGR_CMR|BA_3566	332	BA_3566 "alcohol dehydrogenase	0.511	0.403	0.349	1.2e-14
TIGR_CMR|BA_3438	335	BA_3438 "alcohol dehydrogenase	0.553	0.432	0.339	1.3e-14
TIGR_CMR|BA_3435	317	BA_3435 "alcohol dehydrogenase	0.515	0.425	0.363	5e-13
TAIR|locus:2086335	366	AT3G15090 [Arabidopsis thalian	0.522	0.374	0.286	6.2e-12
UNIPROTKB|I3LFW7	362	LOC100627610 "Uncharacterized	0.530	0.383	0.304	2.8e-11
UNIPROTKB|F1RT47	396	LOC100627610 "Uncharacterized	0.530	0.351	0.304	3.4e-11
TIGR_CMR|CPS_0991	325	CPS_0991 "oxidoreductase, zinc	0.549	0.443	0.324	6.8e-11
UNIPROTKB|G3V1R2	226	RTN4IP1 "Reticulon-4-interacti	0.530	0.615	0.298	8.7e-11
UNIPROTKB|F1NL88	390	RTN4IP1 "Uncharacterized prote	0.541	0.364	0.290	2.1e-10

TAIR|locus:2034802 AOR "alkenal/one oxidoreductase" [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 112/160 (70%), Positives = 126/160 (78%)

Query:    75 TKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK 134
             T   ++P EMKAW+Y +YGGVDVLK +  + VP++KEDQVLIKVVAAALNPVD KRRQGK
Sbjct:    69 TADASIPKEMKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGK 128

Query:   135 FKATDSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAV 194
             FKATDSPLPT                 K+ KEGDEVY +++EKALEGPKQFGSLAEYTAV
Sbjct:   129 FKATDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAV 188

Query:   195 EERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
             EE+LLA KPKN+DF QAAGLPLAIETA EGL RT FSAGK
Sbjct:   189 EEKLLALKPKNIDFAQAAGLPLAIETADEGLVRTEFSAGK 228

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA;IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0010319 "stromule" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0035671 "enone reductase activity" evidence=IDA

GO:0035798 "2-alkenal reductase (NADP+) activity" evidence=IDA

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

TIGR_CMR|BA_3566 BA_3566 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 190 (71.9 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 50/143 (34%), Positives = 73/143 (51%)

Query:    84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-DSPL 142
             MKA +  +YG V  ++  E V +P++ E +VL ++ AA++NP+D K R GK K      +
Sbjct:     1 MKAMIIDKYGKVP-MRMAE-VPIPEINEHEVLAEIHAASINPIDFKIRDGKVKMLLKYEM 58

Query:   143 PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
             P                    FK GDE+Y      A     + G+ AEY A+ E  +A K
Sbjct:    59 PLILGNDFAGVIIKVGSKVTRFKIGDEIY------ARPRKNKIGTFAEYIAIHEDDIALK 112

Query:   203 PKNLDFVQAAGLPLAIETAYEGL 225
             PKNL F +AA +PL   T+Y+ L
Sbjct:   113 PKNLSFEEAASIPLVGLTSYQAL 135

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

TIGR_CMR|BA_3438 BA_3438 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 190 (71.9 bits), Expect = 1.3e-14, P = 1.3e-14
 Identities = 52/153 (33%), Positives = 74/153 (48%)

Query:    84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
             MKA +   +G   V + +E V+ P++    VLI V A ++NP+D K R G   A     P
Sbjct:     1 MKAQIIHSFGDSSVFQLEE-VSKPKLLPGHVLIDVKATSVNPIDTKMRSGAVSAVAPEFP 59

Query:   144 TXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFG-SLAEYTAVEERLLAPK 202
                                +FK GDEVYG        G K+ G +LAE+   + RL+A K
Sbjct:    60 AILHGDVAGIVIEVGEGVSKFKCGDEVYG-----CAGGFKETGGALAEFMLADARLIAHK 114

Query:   203 PKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGK 234
             P N+   +AA LPL   TA+E L +R    +G+
Sbjct:   115 PNNITMEEAAALPLVAITAWESLFDRANIKSGQ 147

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

TIGR_CMR|BA_3435 BA_3435 "alcohol dehydrogenase, zinc-containing" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 175 (66.7 bits), Expect = 5.0e-13, P = 5.0e-13
 Identities = 52/143 (36%), Positives = 74/143 (51%)

Query:    84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS-PL 142
             MKA    +YG   VL+  E  T P + ++ VLI+V AA +NPVD K R+G  +   S   
Sbjct:     1 MKAIGLTQYGDKSVLQEIEMQT-PLLGDNDVLIEVYAAGVNPVDWKIREGLLQDVISYDF 59

Query:   143 PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
             P                    FK GDEVY   +   +E   + G+ AEY AV+E+ +A K
Sbjct:    60 PLVLGWDVAGVVAAIGKNVTVFKVGDEVY---SRPDIE---RNGTYAEYVAVDEKYVAKK 113

Query:   203 PKNLDFVQAAGLPLAIETAYEGL 225
             P+NL F +AA +PL   T+++ L
Sbjct:   114 PRNLSFEEAASIPLVGLTSWQSL 136

GO:0004024 "alcohol dehydrogenase activity, zinc-dependent" evidence=ISS

GO:0006113 "fermentation" evidence=ISS

TAIR|locus:2086335 AT3G15090 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 6.2e-12, P = 6.2e-12
 Identities = 41/143 (28%), Positives = 69/143 (48%)

Query:    85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP-LP 143
             +A +   +GG +V +  E V VP +  ++VL+K  A ++NP+D + R G  ++   P LP
Sbjct:    33 RAVILPRFGGPEVFELRENVPVPNLNPNEVLVKAKAVSVNPLDCRIRAGYGRSVFQPHLP 92

Query:   144 TXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
                               K  K G EV+G ++  AL G     +  +Y  + E  L  KP
Sbjct:    93 IIVGRDVSGEVAAIGTSVKSLKVGQEVFGALHPTALRG-----TYTDYGILSEDELTEKP 147

Query:   204 KNLDFVQAAGLPLAIETAYEGLE 226
              ++  V+A+ +P A  TA+  L+
Sbjct:   148 SSISHVEASAIPFAALTAWRALK 170

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|I3LFW7 LOC100627610 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 161 (61.7 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 49/161 (30%), Positives = 76/161 (47%)

Query:    84 MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATD--- 139
             M AW+  +YG  +VL+F + + +P +   ++V+IKV AA++NP+D   R G + AT    
Sbjct:    43 MPAWVIDKYGNNEVLRFTQNMMLPMIHYPNEVVIKVHAASINPIDVNMRSG-YGATALNM 101

Query:   140 --SPL---------PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSL 188
                PL         P                  K FK GDEV+  +       P + G+L
Sbjct:   102 KRDPLHIRIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP------PWKQGTL 155

Query:   189 AEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG 229
             +E+  V    ++ KPK+L   QAA LP    TA+  + + G
Sbjct:   156 SEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVG 196

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1RT47 LOC100627610 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 161 (61.7 bits), Expect = 3.4e-11, P = 3.4e-11
 Identities = 49/161 (30%), Positives = 76/161 (47%)

Query:    84 MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATD--- 139
             M AW+  +YG  +VL+F + + +P +   ++V+IKV AA++NP+D   R G + AT    
Sbjct:    43 MPAWVIDKYGNNEVLRFTQNMMLPMIHYPNEVVIKVHAASINPIDVNMRSG-YGATALNM 101

Query:   140 --SPL---------PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSL 188
                PL         P                  K FK GDEV+  +       P + G+L
Sbjct:   102 KRDPLHIRIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP------PWKQGTL 155

Query:   189 AEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG 229
             +E+  V    ++ KPK+L   QAA LP    TA+  + + G
Sbjct:   156 SEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVG 196

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

TIGR_CMR|CPS_0991 CPS_0991 "oxidoreductase, zinc-binding" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 159 (61.0 bits), Expect = 6.8e-11, P = 6.8e-11
 Identities = 49/151 (32%), Positives = 69/151 (45%)

Query:    84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
             MKA +  E G  +V +  EK   P  K   ++++V A ++NP+D   R  +   + + LP
Sbjct:     1 MKAMIIKEIGSTEVFQLAEKAK-PVAKAGHMVVEVKATSVNPIDTMLRSIELPWSAN-LP 58

Query:   144 TXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
                                 F  GDEVYG      + G    G+LAE+  V+  L+A KP
Sbjct:    59 EILHGDVAGIVCEVGEGVTGFNVGDEVYGMAG--GINGVD--GALAEFMLVDALLMANKP 114

Query:   204 KNLDFVQAAGLPLAIETAYEGL-ERTGFSAG 233
             K L   QAA LPL   T+YE L E+     G
Sbjct:   115 KTLTMKQAAALPLVAITSYEALVEKMNVQQG 145

GO:0008152 "metabolic process" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|G3V1R2 RTN4IP1 "Reticulon-4-interacting protein 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 8.7e-11, P = 8.7e-11
 Identities = 48/161 (29%), Positives = 76/161 (47%)

Query:    84 MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATD--- 139
             M AW+  +YG  +VL+F + + +P +   ++V++KV AA++NP+D   R G + AT    
Sbjct:    43 MPAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSG-YGATALNM 101

Query:   140 --SPL---------PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSL 188
                PL         P                  K FK GDEV+  +       P + G+L
Sbjct:   102 KRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP------PWKQGTL 155

Query:   189 AEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG 229
             +E+  V    ++ KPK+L   QAA LP    TA+  + + G
Sbjct:   156 SEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVG 196

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|F1NL88 RTN4IP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 2.1e-10, P = 2.1e-10
 Identities = 47/162 (29%), Positives = 73/162 (45%)

Query:    82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQG------- 133
             S M +W+   YG  +VL+F   +  P ++  ++V++KV AA+LNP+D   R G       
Sbjct:    32 SAMPSWVIDRYGRNEVLRFTRDMVFPVIQYPNEVIVKVHAASLNPIDLSMRSGYGATALN 91

Query:   134 ------KFKATDSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGS 187
                   K K+ D+  P                    FK GDEV+  I       P + G+
Sbjct:    92 MKRDPLKIKSMDTEFPLTLGRDASGVIMECGLSVSYFKPGDEVWAAIP------PWKQGT 145

Query:   188 LAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG 229
             L+E+       ++ KPK L  V+AA LP    TA+  + + G
Sbjct:   146 LSEFVVASANEVSFKPKCLSHVEAASLPYVGLTAWSAINKVG 187

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZUC1	QORL_ARATH	1, ., -, ., -, ., -	0.7977	0.6793	0.4611	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	2e-65
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	6e-54
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	2e-51
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	4e-50
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	2e-48
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	2e-46
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	3e-43
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	3e-40
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	1e-38
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	9e-38
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	4e-35
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	2e-34
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	5e-34
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	8e-33
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	2e-32
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	3e-31
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	2e-30
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	1e-28
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	3e-28
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	7e-28
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	1e-27
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	3e-27
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	8e-26
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	6e-25
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	1e-24
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	5e-23
smart00829	287	smart00829, PKS_ER, Enoylreductase	7e-23
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	7e-23
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	1e-22
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	2e-22
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	1e-20
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	5e-20
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	5e-20
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	1e-19
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	1e-19
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	2e-19
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	9e-19
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	3e-18
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	6e-18
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	7e-18
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	1e-17
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	1e-17
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	2e-17
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	5e-17
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	2e-15
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	3e-15
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	6e-15
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	6e-15
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	2e-14
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	3e-14
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	7e-14
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	1e-13
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	2e-13
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	3e-13
cd08288	324	cd08288, MDR_yhdh, Yhdh putative quinone oxidoredu	4e-13
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	2e-12
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	3e-12
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	1e-11
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	2e-11
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	2e-11
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	2e-11
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	5e-11
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	5e-11
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	2e-10
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	3e-10
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	6e-10
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	2e-09
cd05281	341	cd05281, TDH, Threonine dehydrogenase	8e-09
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	3e-08
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-07
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	2e-07
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	2e-07
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	2e-07
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	3e-07
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	3e-07
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	4e-07
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	5e-07
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	8e-07
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	9e-07
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	1e-06
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	2e-06
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	3e-06
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	3e-06
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	7e-06
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	8e-06
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	2e-05
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	2e-05
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	2e-05
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	2e-05
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	4e-05
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	4e-05
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	8e-05
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	8e-05
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	1e-04
cd08238	410	cd08238, sorbose_phosphate_red, L-sorbose-1-phosph	2e-04

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score =  205 bits (524), Expect = 2e-65
 Identities = 78/170 (45%), Positives = 100/170 (58%), Gaps = 9/170 (5%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPL 142
           MKA    EYGG +VL+  + V  P+    +VL+KV AA +NPVD K R+G  K A    L
Sbjct: 1   MKAVRIHEYGGPEVLELAD-VPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTL 59

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P +PG+DVAGVVV VG  V  FK GDEV+G           + G+ AEY  V    LA K
Sbjct: 60  PLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPFT------RGGAYAEYVVVPADELALK 113

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQ 251
           P NL F +AA LPLA  TA++ L   G   AG+++L+   +GGVGS  +Q
Sbjct: 114 PANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQ 163

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  176 bits (449), Expect = 6e-54
 Identities = 77/170 (45%), Positives = 101/170 (59%), Gaps = 7/170 (4%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +   +GG +V +  E V  PQ    QVL++V A+ +NP+D K R+G   A   PLP
Sbjct: 1   MKALVLESFGGPEVFELRE-VPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARP-PLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
            + G DVAGVV  VG  V  F+ GDEVYG             GSLAEY  V+ RLLA KP
Sbjct: 59  AILGCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGGLQ----GSLAEYAVVDARLLALKP 114

Query: 204 KNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQV 252
            NL   +AA LPL   TA+EGL +R    AG+++L+  G+GGVG + +Q+
Sbjct: 115 ANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQL 164

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  170 bits (432), Expect = 2e-51
 Identities = 69/172 (40%), Positives = 95/172 (55%), Gaps = 10/172 (5%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPL 142
           +    YG      +L  + +V +P  K  +VL+KV AA++NPVD K R+G  K     P 
Sbjct: 1   VVYTRYG--SPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPF 58

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P +PG D AG VV VG+ V  FK GDEV+G +       PK  G+LAEY    E  LA K
Sbjct: 59  PPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRL------PPKGGGALAEYVVAPESGLAKK 112

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVC 253
           P+ + F +AA LP+A  TA + L   G    G+ +L+   SGGVG+  +Q+ 
Sbjct: 113 PEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIA 164

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score =  167 bits (425), Expect = 4e-50
 Identities = 70/178 (39%), Positives = 99/178 (55%), Gaps = 20/178 (11%)

Query: 84  MKAWLYGEYGGVDVLK--FDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP 141
           MKA  + +   +       D ++  P      +L++V A ++NPVD K R G       P
Sbjct: 1   MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQP 60

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVY--GDINEKALEGPKQFGSLAEYTAVEERLL 199
              + G+D +GVV  VG++V  FK GDEVY  GDI        +  GS AEY  V+ER++
Sbjct: 61  --KILGWDASGVVEAVGSEVTLFKVGDEVYYAGDIT-------RP-GSNAEYQLVDERIV 110

Query: 200 APKPKNLDFVQAAGLPLAIETAYEGL-ERTGFS-----AGKSILVLNGSGGVGSLVIQ 251
             KPK+L F +AA LPL   TA+E L +R G S      GK++L++ G+GGVGS+ IQ
Sbjct: 111 GHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQ 168

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  162 bits (411), Expect = 2e-48
 Identities = 73/169 (43%), Positives = 93/169 (55%), Gaps = 9/169 (5%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +  E+GG +VLK   +V  P+    +VL++V AA +NP+D   RQG       PLP
Sbjct: 1   MKAVVVEEFGGPEVLKV-VEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVR-PLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
            +PG + AGVVV VG+ V  FK GD V       AL G  + G  AEY  V    L P P
Sbjct: 59  FIPGSEAAGVVVAVGSGVTGFKVGDRVA------ALGGVGRDGGYAEYVVVPADWLVPLP 112

Query: 204 KNLDFVQAAGLPLAIETAYEGLERT-GFSAGKSILVLNGSGGVGSLVIQ 251
             L F +AA LPLA  TA+  L    G   G+++LV   +GGVGS  IQ
Sbjct: 113 DGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQ 161

Length = 326

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score =  158 bits (401), Expect = 2e-46
 Identities = 77/192 (40%), Positives = 103/192 (53%), Gaps = 25/192 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVD-----G--------K 129
           MKAW    YGG+D L   E   +P + K +QVLIKV AA++NP+D     G        K
Sbjct: 1   MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKK 60

Query: 130 RRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLA 189
           R+    K +    P   G D +GVVV +G+ VK F+ GDEV+G +       P   G+ A
Sbjct: 61  RKPQSCKYSGIEFPLTLGRDCSGVVVDIGSGVKSFEIGDEVWGAVP------PWSQGTHA 114

Query: 190 EYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-----FSAGKSILVLNGSGG 244
           EY  V E  ++ KPKNL   +AA LP A  TA+  L   G      +AGK +L+L GSGG
Sbjct: 115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGG 174

Query: 245 VGSLVIQVCYYY 256
           VG+  IQ+   +
Sbjct: 175 VGTFAIQLLKAW 186

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score =  148 bits (377), Expect = 3e-43
 Identities = 66/169 (39%), Positives = 86/169 (50%), Gaps = 7/169 (4%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A  Y E+G  DVL+  + + VP     +VL++V A+ +NPVD   R G +     PLP
Sbjct: 1   MRAIRYHEFGAPDVLRLGD-LPVPTPGPGEVLVRVHASGVNPVDTYIRAGAY-PGLPPLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
            VPG D AGVV  VG  V   K GD V+  +           G+ AEY  V    L P P
Sbjct: 59  YVPGSDGAGVVEAVGEGVDGLKVGDRVW--LTNLGWGRR--QGTAAEYVVVPADQLVPLP 114

Query: 204 KNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQ 251
             + F Q A L +   TAY  L  R G  AG+++LV  GSG VG   +Q
Sbjct: 115 DGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQ 163

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score =  141 bits (358), Expect = 3e-40
 Identities = 66/181 (36%), Positives = 90/181 (49%), Gaps = 19/181 (10%)

Query: 84  MKA-WLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
            KA  L G  GG+ V+     V VP+   D+VL+KV A ALNPVD K +   F       
Sbjct: 1   QKAAVLTGPGGGLLVVV---DVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI---PSY 54

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P + G D AG VV+VG+ V  FK GD V G ++        + G+  EY   +  L A  
Sbjct: 55  PAILGCDFAGTVVEVGSGVTRFKVGDRVAGFVHG-GNPNDPRNGAFQEYVVADADLTAKI 113

Query: 203 PKNLDFVQAAGLPLAIETAYEGL-----------ERTGFSAGKSILVLNGSGGVGSLVIQ 251
           P N+ F +AA LP+ + TA   L           + +  S GK +L+  GS  VG+L IQ
Sbjct: 114 PDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQ 173

Query: 252 V 252
           +
Sbjct: 174 L 174

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score =  137 bits (347), Expect = 1e-38
 Identities = 67/175 (38%), Positives = 90/175 (51%), Gaps = 20/175 (11%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +  E GG +VL+  E V  P     +VLI+V AA +N  D  +RQG +     P P
Sbjct: 1   MKAIVIKEPGGPEVLELGE-VPKPAPGPGEVLIRVAAAGVNRADLLQRQGLY-----PPP 54

Query: 144 ----TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLL 199
                + G +VAGVVV VG  V  +K GD V        L G    G  AEY  V    L
Sbjct: 55  PGASDILGLEVAGVVVAVGPGVTGWKVGDRVCA-----LLAG----GGYAEYVVVPAGQL 105

Query: 200 APKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVC 253
            P P+ L  V+AA LP    TA++ L +  G  AG+++L+  G+ GVG+  IQ+ 
Sbjct: 106 LPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLA 160

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  134 bits (340), Expect = 9e-38
 Identities = 71/173 (41%), Positives = 91/173 (52%), Gaps = 18/173 (10%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKAW+  + G    L   E++ +P     +VL+KV AA LNPVD K       A     P
Sbjct: 1   MKAWVLPKPGAALQLT-LEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA--WSYP 57

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVY--GDINEKALEGPKQFGSLAEYTAVEERLLAP 201
            VPG D AGVVV VG +V  +K GD V     +           GS AEYT V+ R + P
Sbjct: 58  HVPGVDGAGVVVAVGAKVTGWKVGDRVAYHASLARG--------GSFAEYTVVDARAVLP 109

Query: 202 KPKNLDFVQAAGLPLAIETAYEGLE---RTGFSAGKSILVLNGSGGVGSLVIQ 251
            P +L F +AA LP A  TAY+ L    R    AG++IL+  G+GGVGS  +Q
Sbjct: 110 LPDSLSFEEAAALPCAGLTAYQALFKKLRI--EAGRTILITGGAGGVGSFAVQ 160

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score =  128 bits (323), Expect = 4e-35
 Identities = 71/192 (36%), Positives = 94/192 (48%), Gaps = 21/192 (10%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +   +GG +VL++ + +  P+   D+VL++V AAALN +D   R+G       PLP
Sbjct: 1   MKAVVIRGHGGPEVLEYGD-LPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIK-LPLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV--YGDIN----EKALEGP----KQF-------- 185
            + G D AGVV  VG  V   K G  V  Y  I+    E  L G      Q+        
Sbjct: 59  HILGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVD 118

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGG 244
           G  AEY AV  R L P P NL F +AA  PL   TA+  L  R     G+++LV     G
Sbjct: 119 GGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSG 178

Query: 245 VGSLVIQVCYYY 256
           VGS  IQ+   +
Sbjct: 179 VGSAAIQIAKLF 190

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score =  126 bits (318), Expect = 2e-34
 Identities = 65/172 (37%), Positives = 81/172 (47%), Gaps = 16/172 (9%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK--FKATDSP 141
           MKA +  E GG + L  +E    P     +V I+V AA +N  D    QGK   K    P
Sbjct: 1   MKAVVCKELGGPEDLVLEEVPPEPG-APGEVRIRVEAAGVNFPDLLMIQGKYQVKP---P 56

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAP 201
           LP VPG +VAGVV  VG  V  FK GD V               G  AE   V    + P
Sbjct: 57  LPFVPGSEVAGVVEAVGEGVTGFKVGDRVVALT---------GQGGFAEEVVVPAAAVFP 107

Query: 202 KPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQV 252
            P  L F +AA LP+   TAY  L  R     G+++LVL  +GGVG   +Q+
Sbjct: 108 LPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQL 159

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  123 bits (311), Expect = 5e-34
 Identities = 56/156 (35%), Positives = 71/156 (45%), Gaps = 17/156 (10%)

Query: 113 QVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYG 172
           +VL++V AA L   D   R+G        LP + G++ AGVVV+VG  V   K GD V  
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGG-YPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVV 59

Query: 173 DIN--------------EKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAI 218
             N                 + G    G  AEY  V    L P P  L   +AA LP  +
Sbjct: 60  LPNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPL 119

Query: 219 ETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQVC 253
            TAY  L R G    G ++LVL G+GGVG L  Q+ 
Sbjct: 120 ATAYHALRRAGVLKPGDTVLVL-GAGGVGLLAAQLA 154

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score =  121 bits (306), Expect = 8e-33
 Identities = 64/175 (36%), Positives = 88/175 (50%), Gaps = 20/175 (11%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA    E GG +VL   E V +P  K  +VLI+V AA +N  D  +R GK+     P P
Sbjct: 1   MKAIEITEPGGPEVLVLVE-VPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKY-----PPP 54

Query: 144 ----TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLL 199
                + G +VAG VV VG  V  +K GD V   +           G  AEY AV    +
Sbjct: 55  PGASDILGLEVAGEVVAVGEGVSRWKVGDRVCALVAG---------GGYAEYVAVPAGQV 105

Query: 200 APKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVC 253
            P P+ L  V+AA LP    T +  L +R G  AG+++L+  G+ G+G+  IQ+ 
Sbjct: 106 LPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLA 160

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score =  120 bits (304), Expect = 2e-32
 Identities = 61/160 (38%), Positives = 89/160 (55%), Gaps = 18/160 (11%)

Query: 100 FDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT 159
            D  +  P+     +L++V A ++NPVD K R         P   + G+D AGVVV VG 
Sbjct: 18  VDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQP--KILGWDAAGVVVAVGD 75

Query: 160 QVKEFKEGDEVY--GDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLA 217
           +V  FK GDEV+  GDI+          GS AE+  V+ER++  KPK+L F +AA LPL 
Sbjct: 76  EVTLFKPGDEVWYAGDIDRP--------GSNAEFHLVDERIVGHKPKSLSFAEAAALPLT 127

Query: 218 IETAYE------GLERTGFSAGKSILVLNGSGGVGSLVIQ 251
             TA+E      G+        +++L++ G+GGVGS++IQ
Sbjct: 128 SITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQ 167

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score =  117 bits (296), Expect = 3e-31
 Identities = 67/177 (37%), Positives = 90/177 (50%), Gaps = 18/177 (10%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A     +GGVDVLK  E    P  K + VLIKV AA +N  D  +RQGK+     P P
Sbjct: 2   MRAVTLKGFGGVDVLKIGE-SPKPAPKRNDVLIKVSAAGVNRADTLQRQGKY----PPPP 56

Query: 144 TVP---GYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLA 200
                 G +VAG V  VG+ VK FKEGD V        L G    G  AEY    +  + 
Sbjct: 57  GSSEILGLEVAGYVEDVGSDVKRFKEGDRVMA-----LLPG----GGYAEYAVAHKGHVM 107

Query: 201 PKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQVCYYY 256
             P+   F +AA +P A  TA++ L++ G    G+S+L+  G+ GVG+   Q+   Y
Sbjct: 108 HIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKY 164

Length = 334

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  115 bits (291), Expect = 2e-30
 Identities = 60/171 (35%), Positives = 82/171 (47%), Gaps = 7/171 (4%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A  + ++GG +VL+ +E + VP     +VLI+V A  LN  D   R+G +     PLP
Sbjct: 1   MRAVRFHQFGGPEVLRIEE-LPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIE-PPPLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
              GY+ AGVV  VG  V  F  GD V    +        Q+G+ AEY  V    +   P
Sbjct: 59  ARLGYEAAGVVEAVGAGVTGFAVGDRV----SVIPAADLGQYGTYAEYALVPAAAVVKLP 114

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVC 253
             L FV+AA L +   TAY  L        G S+L+   S  VG   IQ+ 
Sbjct: 115 DGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIA 165

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  110 bits (277), Expect = 1e-28
 Identities = 63/183 (34%), Positives = 81/183 (44%), Gaps = 16/183 (8%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKAW     GG+D LK  E   VP+    +VL++V A +LN  D     G++       P
Sbjct: 1   MKAWRLSGGGGLDNLKLVE-EPVPEPGPGEVLVRVHAVSLNYRDLLILNGRY-PPPVKDP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV---------YGDINEKALE---GPKQFGSLAEY 191
            +P  D AG VV VG  V  FK GD V          G    +      G    G LAEY
Sbjct: 59  LIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEY 118

Query: 192 TAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVI 250
             + E  L   P +L F +AA LP A  TA+  L        G ++LV  G+GGV    +
Sbjct: 119 VVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQ-GTGGVSLFAL 177

Query: 251 QVC 253
           Q  
Sbjct: 178 QFA 180

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  109 bits (275), Expect = 3e-28
 Identities = 59/170 (34%), Positives = 85/170 (50%), Gaps = 12/170 (7%)

Query: 85  KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPT 144
           +A +   +GG+D LK +++  +P+    +V ++V A  LN  D   RQG + +     P 
Sbjct: 1   RAVVLTGFGGLDKLKVEKE-ALPEPSSGEVRVRVEACGLNFADLMARQGLYDSA-PKPPF 58

Query: 145 VPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPK 204
           VPG++ AG V  VG  VK+FK GD V G            FG  AE   V    + P P 
Sbjct: 59  VPGFECAGTVEAVGEGVKDFKVGDRVMGLTR---------FGGYAEVVNVPADQVFPLPD 109

Query: 205 NLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQVC 253
            + F +AA  P+   TAY  L   G    G+S+LV + +GGVG    Q+C
Sbjct: 110 GMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLC 159

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score =  108 bits (272), Expect = 7e-28
 Identities = 56/163 (34%), Positives = 77/163 (47%), Gaps = 16/163 (9%)

Query: 91  EYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV 150
           + GG +VL++++ V VP+    +VL++  A  +N +D   R G +     PLP V G + 
Sbjct: 7   KTGGPEVLEYED-VPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL---PLPFVLGVEG 62

Query: 151 AGVVVKVGTQVKEFKEGDEV-YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFV 209
           AGVV  VG  V  FK GD V Y              G+ AEY  V    L   P  +   
Sbjct: 63  AGVVEAVGPGVTGFKVGDRVAYAGP----------PGAYAEYRVVPASRLVKLPDGISDE 112

Query: 210 QAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQ 251
            AA L L   TA+  L  T     G ++LV   +GGVG L+ Q
Sbjct: 113 TAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQ 155

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score =  107 bits (269), Expect = 1e-27
 Identities = 48/143 (33%), Positives = 71/143 (49%), Gaps = 15/143 (10%)

Query: 112 DQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVY 171
           D+V ++V AA LN  D     G     ++PL    G + +G+V +VG+ V   K GD V 
Sbjct: 1   DEVEVEVKAAGLNFRDVLVALGLLPGDETPL----GLECSGIVTRVGSGVTGLKVGDRVM 56

Query: 172 GDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGF 230
           G             G+ A +  V+ RL+   P +L F +AA LP+A  TAY  L +    
Sbjct: 57  GLAP----------GAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARL 106

Query: 231 SAGKSILVLNGSGGVGSLVIQVC 253
             G+S+L+   +GGVG   IQ+ 
Sbjct: 107 QKGESVLIHAAAGGVGQAAIQLA 129

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  107 bits (269), Expect = 3e-27
 Identities = 59/198 (29%), Positives = 83/198 (41%), Gaps = 28/198 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP-- 141
           M+A L   +GG+D L + + V VP     +VLI+V A  +N  D   R+G +        
Sbjct: 1   MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGAT 60

Query: 142 ----------------LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQF 185
                            P + G D+ G VV VG  V   + G+ V  D + +        
Sbjct: 61  DSTGAGEAGWWGGTLSFPRIQGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPA 120

Query: 186 ----------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKS 235
                     G  AEYT V      P    L  V+ A  P +  TA   LER G  AG++
Sbjct: 121 DIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENMLERAGVGAGET 180

Query: 236 ILVLNGSGGVGSLVIQVC 253
           +LV   SGGVGS ++Q+ 
Sbjct: 181 VLVTGASGGVGSALVQLA 198

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score =  104 bits (260), Expect = 8e-26
 Identities = 65/215 (30%), Positives = 96/215 (44%), Gaps = 44/215 (20%)

Query: 77  VGTVPSEMKAWL-----YGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALN------- 124
           +G VP +M A+      YG+      L   E V VP++   +VL+ V+AA +N       
Sbjct: 6   LGVVPEKMYAFAIRPERYGDPAQAIQL---EDVPVPELGPGEVLVAVMAAGVNYNNVWAA 62

Query: 125 ---PVDG-KRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVY-------GD 173
              PV     RQ + +        + G D +G+V  VG  VK +K GDEV        G+
Sbjct: 63  LGEPVSTFAARQRRGRDEPY---HIGGSDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGN 119

Query: 174 INEKALEGP------------KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA 221
             E+A   P              +GS A++  V+   L PKPK+L + +AA   L   TA
Sbjct: 120 DPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSWEEAAAYMLVGATA 179

Query: 222 YEGL---ERTGFSAGKSILVLNGSGGVGSLVIQVC 253
           Y  L          G ++L+   SGG+GS+ IQ+ 
Sbjct: 180 YRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLA 214

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  100 bits (252), Expect = 6e-25
 Identities = 59/192 (30%), Positives = 88/192 (45%), Gaps = 25/192 (13%)

Query: 81  PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS 140
              MKA +  ++G    L+ +E V VP+    +VLIKV A  +   D    +G +     
Sbjct: 1   MMTMKAAVLKKFGQP--LEIEE-VPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWP--VP 55

Query: 141 PLPTVPGYDVAGVVVKVGTQVKEFKEGDEV-------------Y---GDIN---EKALEG 181
            LP +PG+++ G VV+VG  V   K GD V             Y   G+ N    + + G
Sbjct: 56  KLPLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITG 115

Query: 182 PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNG 241
               G  AEY  V  R +   P+ LD  +AA L  A  T Y  L++     GK + V+ G
Sbjct: 116 YTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYRALKKANVKPGKWVAVV-G 174

Query: 242 SGGVGSLVIQVC 253
           +GG+G + +Q  
Sbjct: 175 AGGLGHMAVQYA 186

Length = 339

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score =  100 bits (250), Expect = 1e-24
 Identities = 62/186 (33%), Positives = 90/186 (48%), Gaps = 23/186 (12%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA ++ E  G++ LK ++ V  P+    +VLI+V  A +NPVD        K    P+P
Sbjct: 1   MKALVF-EKSGIENLKVED-VKDPKPGPGEVLIRVKMAGVNPVD-YNVINAVKV--KPMP 55

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV--YGDI----NEKALEGPKQF------------ 185
            +PG + AGVV +VG  VK  K+GD V  Y  +     +  L G +              
Sbjct: 56  HIPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSN 115

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGV 245
           G  AEY  V E+ L   P ++    AA LP+A  TAY  L+  G   G++++V   SG  
Sbjct: 116 GGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKTAGLGPGETVVVFGASGNT 175

Query: 246 GSLVIQ 251
           G   +Q
Sbjct: 176 GIFAVQ 181

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 96.4 bits (240), Expect = 5e-23
 Identities = 62/210 (29%), Positives = 88/210 (41%), Gaps = 35/210 (16%)

Query: 77  VGTVPSEMKAWLYGE--YGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALN---------- 124
           +  VP  M A+   E   G        E V VP++   +VL+ V+AA +N          
Sbjct: 1   ITVVPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGE 60

Query: 125 PVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPK- 183
           PV       K+   D P   + G D +GVV +VG  V  +K GDEV     +  L  P  
Sbjct: 61  PVSTFAFLRKYGKLDLPF-HIIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDG 119

Query: 184 ------------------QFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL 225
                              FGS AE+  V++  L PKPK+L + +AA   L   TAY  L
Sbjct: 120 RDGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQL 179

Query: 226 ---ERTGFSAGKSILVLNGSGGVGSLVIQV 252
                     G ++L+   +GG+GS   Q+
Sbjct: 180 VGWNPAAVKPGDNVLIWGAAGGLGSYATQL 209

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 94.4 bits (236), Expect = 7e-23
 Identities = 45/144 (31%), Positives = 60/144 (41%), Gaps = 26/144 (18%)

Query: 116 IKVVAAALNPVD-----GKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV 170
           I+V AA LN  D     G            P   V G + AGVV +VG  V     GD V
Sbjct: 1   IEVRAAGLNFRDVLIALGL----------YPGEAVLGGECAGVVTRVGPGVTGLAVGDRV 50

Query: 171 YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTG 229
            G             G+ A     + RL+ P P    F +AA +P+   TAY  L +   
Sbjct: 51  MGLAP----------GAFATRVVTDARLVVPIPDGWSFEEAATVPVVFLTAYYALVDLAR 100

Query: 230 FSAGKSILVLNGSGGVGSLVIQVC 253
              G+S+L+   +GGVG   IQ+ 
Sbjct: 101 LRPGESVLIHAAAGGVGQAAIQLA 124

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 95.0 bits (237), Expect = 7e-23
 Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 12/163 (7%)

Query: 92  YGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVA 151
            GG +VLK  E   +P+    +V++KV A+ ++  D + R+G +     PLP  PGYD+ 
Sbjct: 9   RGGPEVLKVVE-ADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQP-PLPFTPGYDLV 66

Query: 152 GVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQA 211
           G V  +G+ V  F+ GD V       AL    + G  AEY  ++ + L P P+ +D  +A
Sbjct: 67  GRVDALGSGVTGFEVGDRV------AAL---TRVGGNAEYINLDAKYLVPVPEGVDAAEA 117

Query: 212 AGLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVC 253
             L L   TAY+ L R      G+ +L+   SGGVG  ++++ 
Sbjct: 118 VCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELA 160

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 94.6 bits (236), Expect = 1e-22
 Identities = 58/164 (35%), Positives = 85/164 (51%), Gaps = 13/164 (7%)

Query: 102 EKVTVP-QVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ 160
            K+ +P   K++++++KV AAALNPVD K                 G D +GV+VKVG+ 
Sbjct: 18  IKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHF-KVKEKGLGRDYSGVIVKVGSN 76

Query: 161 VK-EFKEGDEVYGDINEKALEGPKQFGSLAEY----TAVEERLLAPKPKNLDFVQAAGLP 215
           V  E+K GDEV G I      G    G+L++Y       +++ +  KP+N+   +AA  P
Sbjct: 77  VASEWKVGDEVCG-IYPHPYGG---QGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWP 132

Query: 216 LAIETAYEGLERTGFSAGKS--ILVLNGSGGVGSLVIQVCYYYL 257
           L + TAY+ LE  G   G    +LVL GS  VG   IQ+   + 
Sbjct: 133 LVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHY 176

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 93.6 bits (233), Expect = 2e-22
 Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 8/147 (5%)

Query: 105 TVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF 164
            V      +V I+V A +LN  D    +G +  T  P P  PG++ +GVV  VG  V   
Sbjct: 1   EVAPPGPGEVRIQVRAFSLNFGDLLCVRGLY-PTMPPYPFTPGFEASGVVRAVGPHVTRL 59

Query: 165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224
             GDEV     E         G  A    V E  +  KP +L F +A  LP+   T  + 
Sbjct: 60  AVGDEVIAGTGE-------SMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDA 112

Query: 225 LERTGFSAGKSILVLNGSGGVGSLVIQ 251
             R G + G+ IL+   +GG G + +Q
Sbjct: 113 FARAGLAKGEHILIQTATGGTGLMAVQ 139

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 88.9 bits (221), Expect = 1e-20
 Identities = 53/169 (31%), Positives = 72/169 (42%), Gaps = 20/169 (11%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E+V  P+    +VLIKV AA +   D    +G F       P + G+++ G V +VG  V
Sbjct: 16  EEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR--GKYPLILGHEIVGTVEEVGEGV 73

Query: 162 KEFKEGDEVYGDINE------------------KALEGPKQFGSLAEYTAVEERLLAPKP 203
           + FK GD V                        +A  G +  G  AEY  V ER L   P
Sbjct: 74  ERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLP 133

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQV 252
            N+    AA     + TA   L+R G   G ++LV    GGVG   IQ+
Sbjct: 134 DNVSDESAALAACVVGTAVHALKRAGVKKGDTVLVTGAGGGVGIHAIQL 182

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 87.3 bits (217), Expect = 5e-20
 Identities = 52/189 (27%), Positives = 84/189 (44%), Gaps = 29/189 (15%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +    G +      E +  P+    +VL+KV A  +   D  R  G         P
Sbjct: 1   MKALVLTGPGDLRY----EDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGAY---HPP 53

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV------------YGDINEKAL------EGPKQF 185
            V G++ +G V +VG+ V +   GD V            Y    E +L       G ++ 
Sbjct: 54  LVLGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRD 113

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNGSGG 244
           G+ AEY +V  R L   P ++D+ +AA + P A+  A   +   G + G +++V+ G+G 
Sbjct: 114 GAFAEYVSVPARNLIKIPDHVDYEEAAMIEPAAV--ALHAVRLAGITLGDTVVVI-GAGT 170

Query: 245 VGSLVIQVC 253
           +G L IQ  
Sbjct: 171 IGLLAIQWL 179

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 87.2 bits (217), Expect = 5e-20
 Identities = 68/187 (36%), Positives = 90/187 (48%), Gaps = 29/187 (15%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +Y   G ++V    E+V VP+   D+VLIKV A  +   D    +G+F A     P
Sbjct: 1   MKALVYEGPGELEV----EEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGAA---PP 53

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALE------GPKQF------------ 185
            VPG++ AGVVV VG++V  FK GD V  D N    E      G                
Sbjct: 54  LVPGHEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRN 113

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNGSGG 244
           G  AEY  V  + +   P NL F +AA   PL+   A  GL+  G   G S+LV  G+G 
Sbjct: 114 GGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLS--CAVHGLDLLGIKPGDSVLVF-GAGP 170

Query: 245 VGSLVIQ 251
           +G L+ Q
Sbjct: 171 IGLLLAQ 177

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 86.5 bits (215), Expect = 1e-19
 Identities = 58/190 (30%), Positives = 83/190 (43%), Gaps = 25/190 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-DSPL 142
           MKA    EYG    L   E V VP+    QVL++V  A +   D     G +       L
Sbjct: 1   MKAARLYEYGKPLRL---EDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKL 57

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEV--YGDINEKA----LEGPKQF----------- 185
           P   G++ AG V +VG+ V   KEGD V  +             G + +           
Sbjct: 58  PFTLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGT 117

Query: 186 -GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG--FSAGKSILVLNGS 242
            G  AEY  V  R L   P+ LD V+AA L  A  TAY  +++       G +++V+ G 
Sbjct: 118 DGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVI-GV 176

Query: 243 GGVGSLVIQV 252
           GG+G + +Q+
Sbjct: 177 GGLGHIAVQI 186

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 86.2 bits (214), Expect = 1e-19
 Identities = 52/170 (30%), Positives = 69/170 (40%), Gaps = 22/170 (12%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E+V VP+    +VLIK+ A  +   D    +G +    S  P VPG+++ G VV+VG  V
Sbjct: 15  EEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGG--SKYPLVPGHEIVGEVVEVGAGV 72

Query: 162 KEFKEGDEV-----YGDI-------NEKALEGPKQF-------GSLAEYTAVEERLLAPK 202
           +  K GD V      G                 K         G  AEY   +       
Sbjct: 73  EGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLL 132

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQV 252
           P  L   QAA L  A  T Y  L   G   G+ + VL G GG+G L +Q 
Sbjct: 133 PDGLPLAQAAPLLCAGITVYSALRDAGPRPGERVAVL-GIGGLGHLAVQY 181

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 86.1 bits (214), Expect = 2e-19
 Identities = 56/176 (31%), Positives = 81/176 (46%), Gaps = 15/176 (8%)

Query: 84  MKAWLYGEYGGV-DVLKFDEKVTVPQVKE-DQVLIKVVAAALNPVDGKRRQGKF---KAT 138
            KA +Y E+G   +VL+  E   +P     ++VL+K++AA +NP D  + QG +     T
Sbjct: 1   AKALVYTEHGEPKEVLQL-ESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPT 59

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL 198
               P V G +  G VVKVG+ VK  K GD V        +      G+   +  V    
Sbjct: 60  TPEPPAVGGNEGVGEVVKVGSGVKSLKPGDWV--------IPLRPGLGTWRTHAVVPADD 111

Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNG-SGGVGSLVIQVC 253
           L   P ++D  QAA L +   TAY  LE          ++ NG +  VG  VIQ+ 
Sbjct: 112 LIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLA 167

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 83.7 bits (208), Expect = 9e-19
 Identities = 56/187 (29%), Positives = 81/187 (43%), Gaps = 22/187 (11%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +  E+G        + V VP+    +VL+K+ A+ +   D     G +      LP
Sbjct: 1   MKAAVVEEFGEKPYEV--KDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDW-PVKPKLP 57

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV----------------YGDIN---EKALEGPKQ 184
            + G++ AGVVV VG  V   K GD V                 GD      +   G   
Sbjct: 58  LIGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTV 117

Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGG 244
            G+ AEY   + R + P P  L F QAA L  A  T Y+ L++ G   G  +++    GG
Sbjct: 118 DGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKALKKAGLKPGDWVVISGAGGG 177

Query: 245 VGSLVIQ 251
           +G L +Q
Sbjct: 178 LGHLGVQ 184

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 82.2 bits (204), Expect = 3e-18
 Identities = 54/177 (30%), Positives = 73/177 (41%), Gaps = 21/177 (11%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA +  E  G  V  F   + +  + E  VLI+V  ++LN  D     G    T    P
Sbjct: 1   FKALVVEEQDG-GVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVT-RNYP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVY---GDINEKALEGPKQFGSLAEYTAVEERLLA 200
             PG D AG VV        F+EGDEV     D+      G    G  AEY  V    + 
Sbjct: 59  HTPGIDAAGTVVSSD--DPRFREGDEVLVTGYDL------GMNTDGGFAEYVRVPADWVV 110

Query: 201 PKPKNLDFVQA-----AGLPLAIETAYEGLERTGFSAGKS-ILVLNGSGGVGSLVIQ 251
           P P+ L   +A     AG   A+  +   LE  G +     +LV   +GGVGS+ + 
Sbjct: 111 PLPEGLSLREAMILGTAGFTAAL--SVHRLEDNGQTPEDGPVLVTGATGGVGSIAVA 165

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 81.2 bits (201), Expect = 6e-18
 Identities = 53/169 (31%), Positives = 73/169 (43%), Gaps = 20/169 (11%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E+V  P+  +D+V+IKV  A L   D  + QG +       P + G++V G V +VG  V
Sbjct: 16  EEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR--MKYPVILGHEVVGTVEEVGENV 73

Query: 162 KEFKEGDEVYGDINE------------------KALEGPKQFGSLAEYTAVEERLLAPKP 203
           K FK GD V   +                    +   G +  G  AEY  V+   L   P
Sbjct: 74  KGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVP 133

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQV 252
            N+    A  +P      Y GL R G   G+++LV    GGVG   IQV
Sbjct: 134 PNVSDEGAVIVPCVTGMVYRGLRRAGVKKGETVLVTGAGGGVGIHAIQV 182

Length = 334

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 81.1 bits (201), Expect = 7e-18
 Identities = 59/192 (30%), Positives = 82/192 (42%), Gaps = 31/192 (16%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFKAT 138
           MKAW + + G   +L  +E V VP+    +VL+KV AA      L+ +DG         T
Sbjct: 1   MKAWRFHK-GSKGLLVLEE-VPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVP------T 52

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALE------------------ 180
            + LP   G+++AG VV+VG  V  FK GD V                            
Sbjct: 53  LTKLPLTLGHEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMP 112

Query: 181 GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN 240
           G    G  AEY  V  R L P P  + F QAA    A+ T Y  + R G       +++ 
Sbjct: 113 GLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVI 172

Query: 241 GSGGVGSLVIQV 252
           G GG+G   +Q+
Sbjct: 173 GLGGLGLNAVQI 184

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 80.1 bits (198), Expect = 1e-17
 Identities = 59/192 (30%), Positives = 85/192 (44%), Gaps = 30/192 (15%)

Query: 84  MKAWL-YG-EYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP 141
           MKA +  G   G V++ +  E    P+    +VLIKV AA +   D    +G +      
Sbjct: 1   MKALVKTGPGPGNVELREVPE----PEPGPGEVLIKVAAAGICGSDLHIYKGDYD--PVE 54

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVY----------------GDIN---EKALEGP 182
            P V G++ +G +V+VG  V+ +K GD V                 GD N    +   G 
Sbjct: 55  TPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGT 114

Query: 183 KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNG 241
           +  G  AEY  V E  L   P+NL    AA   PLA+   +   ER+G   G +++V  G
Sbjct: 115 QADGGFAEYVLVPEESLHELPENLSLEAAALTEPLAV-AVHAVAERSGIRPGDTVVVF-G 172

Query: 242 SGGVGSLVIQVC 253
            G +G L  QV 
Sbjct: 173 PGPIGLLAAQVA 184

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 79.6 bits (197), Expect = 1e-17
 Identities = 42/111 (37%), Positives = 50/111 (45%), Gaps = 14/111 (12%)

Query: 141 PLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLA 200
           PLP  PGY   G VV+VG+ V  FK GD V+             FG  AE   V   LL 
Sbjct: 19  PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFC------------FGPHAERVVVPANLLV 66

Query: 201 PKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQ 251
           P P  L   +AA   LA  TA  G+       G+ + V+ G G VG L  Q
Sbjct: 67  PLPDGLPPERAALTALA-ATALNGVRDAEPRLGERVAVV-GLGLVGLLAAQ 115

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 79.7 bits (197), Expect = 2e-17
 Identities = 55/163 (33%), Positives = 70/163 (42%), Gaps = 34/163 (20%)

Query: 98  LKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVV-- 155
           L+  E V  PQ    + L++V A +LN     R + KF A + P   VPG+D AGVV   
Sbjct: 14  LRLGE-VPDPQPAPHEALVRVAAISLN-----RGELKF-AAERPDGAVPGWDAAGVVERA 66

Query: 156 -------KVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDF 208
                   VG +V                        G+ AE  AV    LA  P  + F
Sbjct: 67  AADGSGPAVGARVVGLGAM------------------GAWAELVAVPTGWLAVLPDGVSF 108

Query: 209 VQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQ 251
            QAA LP+A  TA   L R G   G+ +LV   SGGVG   +Q
Sbjct: 109 AQAATLPVAGVTALRALRRGGPLLGRRVLVTGASGGVGRFAVQ 151

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 78.8 bits (195), Expect = 5e-17
 Identities = 60/198 (30%), Positives = 82/198 (41%), Gaps = 41/198 (20%)

Query: 84  MKAWLYGEYGGVDV--LKFDEKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFK 136
           MKA +  + G ++   L+  E V VP+    +VLIKV A       L+ V+G     K  
Sbjct: 1   MKAMVLEKPGPIEENPLRLTE-VPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPK-- 57

Query: 137 ATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV-------------Y---GDINEKALE 180
                LP +PG+++ G V  VG  V  F  GD V             Y   G  N   L 
Sbjct: 58  -----LPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGREN---LC 109

Query: 181 GPKQF------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
              +F      G  AEY   +ER   P P++ D  +AA L  A    Y  L+  G   G+
Sbjct: 110 DNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRALKLAGLKPGQ 169

Query: 235 SILVLNGSGGVGSLVIQV 252
             L L G G    L +Q+
Sbjct: 170 -RLGLYGFGASAHLALQI 186

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 74.7 bits (184), Expect = 2e-15
 Identities = 55/181 (30%), Positives = 76/181 (41%), Gaps = 26/181 (14%)

Query: 97  VLKFDEKVT-----VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVA 151
           V   D  V      VP     +VL++V A+ L   D        +A       +PG++ A
Sbjct: 5   VFPGDRTVELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQ-GVIPGHEPA 63

Query: 152 GVVVKVGTQVKEFKEGDEV------------YGD-------INEKALEGPKQFGSLAEYT 192
           GVVV VG  V  F+ GD V                       +++A  G  + G  AEY 
Sbjct: 64  GVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYM 123

Query: 193 AVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQV 252
            V E+ L P P +L F   A L   I TAY  L R G S   ++LV+ G+G VG   + +
Sbjct: 124 LVPEKTLIPLPDDLSFADGALLLCGIGTAYHALRRVGVSGRDTVLVV-GAGPVGLGALML 182

Query: 253 C 253
            
Sbjct: 183 A 183

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 73.4 bits (181), Expect = 3e-15
 Identities = 51/167 (30%), Positives = 72/167 (43%), Gaps = 15/167 (8%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +  + GG +VLK  E + +P+ K   VLI+V A  LN  +   RQG   +     P
Sbjct: 1   MKAIVIEQPGGPEVLKLRE-IPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVK--FP 57

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQF---GSLAEYTAVEERLLA 200
            V G +  G V +       F  G  V          G       GS AEYT V    + 
Sbjct: 58  RVLGIEAVGEVEE--APGGTFTPGQRVA------TAMGGMGRTFDGSYAEYTLVPNEQVY 109

Query: 201 PKPKNLDFVQAAGLPLAIETAYEGLERT-GFSAGKSILVLNGSGGVG 246
               +L + + A LP    TA+  L R+ G   G ++L+  G+  VG
Sbjct: 110 AIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVG 156

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 73.0 bits (180), Expect = 6e-15
 Identities = 59/190 (31%), Positives = 84/190 (44%), Gaps = 27/190 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A +Y E+G    +    +V  P+   D V+++V A  +   D    QG     D  LP
Sbjct: 1   MRAAVYEEFGEPLEI---REVPDPEPPPDGVVVEVEACGVCRSDWHGWQGH--DPDVTLP 55

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDIN------EKALEG-----PKQF------- 185
            VPG++ AGVVV+VG  V  ++ GD V                G       Q        
Sbjct: 56  HVPGHEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHP 115

Query: 186 GSLAEYTAVE--ERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGS 242
           GS AEY AV   +  L   P ++DFV AAGL     TA+  L  +     G+ + V +G 
Sbjct: 116 GSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAV-HGC 174

Query: 243 GGVGSLVIQV 252
           GGVG   + +
Sbjct: 175 GGVGLSAVMI 184

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 68.4 bits (168), Expect = 6e-15
 Identities = 29/109 (26%), Positives = 40/109 (36%), Gaps = 20/109 (18%)

Query: 111 EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV 170
             +VL++V AA +   D    +G+       LP + G++ AG+V +VG  V   K GD V
Sbjct: 1   PGEVLVRVKAAGICGSDLHIYRGEPPPV--KLPLILGHEGAGIVEEVGPGVTGLKVGDRV 58

Query: 171 YGDIN------------------EKALEGPKQFGSLAEYTAVEERLLAP 201
                                       G    G  AEY  V  R L P
Sbjct: 59  VVYPLIPCGKCAACREGRENLCPNGKFLGVHLDGGFAEYVVVPARNLVP 107

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 71.2 bits (175), Expect = 2e-14
 Identities = 60/213 (28%), Positives = 90/213 (42%), Gaps = 51/213 (23%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +         +   E++ VP+ KE ++LI+V A  +   D    +G+      P P
Sbjct: 1   MKAAVLKGPNPPLTI---EEIPVPRPKEGEILIRVAACGVCHSDLHVLKGE---LPFPPP 54

Query: 144 TVPGYDVAGVVVKVGTQVK---EFKEGDEVYG-----------------DINEKALE--- 180
            V G++++G VV+VG  V+       GD V G                 ++ E       
Sbjct: 55  FVLGHEISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNR 114

Query: 181 -----------------GPKQFGS---LAEYTAVEERLLAPKPKNLDFVQAAGLPLAIET 220
                            GP    S   LAEY  V    LAP P++LD+ ++A L  A  T
Sbjct: 115 LKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFT 174

Query: 221 AYEGLERTG-FSAGKSILVLNGSGGVGSLVIQV 252
           AY  L+       G+++ V+ G GGVGS  IQ+
Sbjct: 175 AYGALKHAADVRPGETVAVI-GVGGVGSSAIQL 206

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 56/169 (33%), Positives = 73/169 (43%), Gaps = 9/169 (5%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP-L 142
           M+A    E+G  +VL   E V  P     QV I V AA ++ VD + R G       P L
Sbjct: 1   MRAIRLHEFGPPEVLVP-EDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPEL 59

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P VPG +VAGVV  VG  V     G  V            +  G  AE    +   L P 
Sbjct: 60  PYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHT-------GRAGGGYAELAVADVDSLHPV 112

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQ 251
           P  LD   A  +     TA   L+    + G  +LV   +GG+GSL++Q
Sbjct: 113 PDGLDLEAAVAVVHDGRTALGLLDLATLTPGDVVLVTAAAGGLGSLLVQ 161

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 69.9 bits (172), Expect = 7e-14
 Identities = 54/194 (27%), Positives = 84/194 (43%), Gaps = 35/194 (18%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +      V +    E+V VP+    +VL+KV A  +   D K+ +G    TD   P
Sbjct: 1   MKAAVLHGPNDVRL----EEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGH--TDLKPP 54

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDIN-----------------EKALEGPKQF- 185
            + G+++AG +V+VG  V  FK GD V+   +                     +    + 
Sbjct: 55  RILGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYD 114

Query: 186 GSLAEY-----TAVEERLLAPKPKNLDFVQAAGL--PLAIETAYEGLERTGFSAGKSILV 238
           G  AEY      AV+   +   P N+ F +AA L  PLA         + G   G ++LV
Sbjct: 115 GGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAA-LVEPLA--CCINAQRKAGIKPGDTVLV 171

Query: 239 LNGSGGVGSLVIQV 252
           + G+G +G L   +
Sbjct: 172 I-GAGPIGLLHAML 184

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 43/152 (28%), Positives = 61/152 (40%), Gaps = 14/152 (9%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVD-GKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ 160
           E+   P     QVL++V    +   D     QG+        P  PG++  G VV +G  
Sbjct: 10  EEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPG 69

Query: 161 VKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIET 220
           V+    GD V G             G+ AEY   +     P P  LD     G PL    
Sbjct: 70  VRGLAVGDRVAG----------LSGGAFAEYDLADADHAVPLPSLLDGQAFPGEPLG--C 117

Query: 221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQV 252
           A     R    AGK++ V+ G+G +G L +Q+
Sbjct: 118 ALNVFRRGWIRAGKTVAVI-GAGFIGLLFLQL 148

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 44/146 (30%), Positives = 65/146 (44%), Gaps = 17/146 (11%)

Query: 112 DQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVY 171
            +VL++++AA +NP D     G + +   PLP VPG +  GVVV+VG+ V     G  V 
Sbjct: 27  GEVLVRMLAAPINPSDLITISGAYGSR-PPLPAVPGNEGVGVVVEVGSGVSGLLVGQRV- 84

Query: 172 GDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL---PLAIETAYEGLERT 228
                    G    G+  EY       L P P ++   QAA L   PL   TA+  L   
Sbjct: 85  ------LPLGG--EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL---TAWLMLTEY 133

Query: 229 GFSAGKSILVLNGSG-GVGSLVIQVC 253
                   ++ N +   VG ++IQ+ 
Sbjct: 134 LKLPPGDWVIQNAANSAVGRMLIQLA 159

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 68.0 bits (167), Expect = 3e-13
 Identities = 55/198 (27%), Positives = 78/198 (39%), Gaps = 33/198 (16%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVD----------GKRRQG 133
           MKA    E G    L+  E +  P+    +VL+KV A  +   D          G  +  
Sbjct: 1   MKAAAVVEPG--KPLEEVE-IDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTM 57

Query: 134 KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDE--VY-------------GDINE-- 176
                   LP V G+++ G VV VG    + K GD+  VY             GD N   
Sbjct: 58  SLDDRGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCA 117

Query: 177 -KALEGPKQFGSLAEYTAVE-ERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
                G  Q G  AEY  V   R L   P  LD   AA L  +  TAY  +++       
Sbjct: 118 KGRALGIFQDGGYAEYVIVPHSRYLVD-PGGLDPALAATLACSGLTAYSAVKKLMPLVAD 176

Query: 235 SILVLNGSGGVGSLVIQV 252
             +V+ G+GG+G + + +
Sbjct: 177 EPVVIIGAGGLGLMALAL 194

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176248 cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases

 Score = 67.6 bits (166), Expect = 4e-13
 Identities = 53/179 (29%), Positives = 76/179 (42%), Gaps = 27/179 (15%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA +  +  G    +  E +    + E  V ++V  + LN  DG    GK     +  P
Sbjct: 1   FKALVLEKDDGGTSAELRE-LDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRT-FP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV----YGDINEKALEGPKQFGSLAEYTAVEERLL 199
            VPG D+AG VV+  +    FK GD V    +G        G + +G  A+   V+   L
Sbjct: 59  LVPGIDLAGTVVE--SSSPRFKPGDRVVLTGWG-------VGERHWGGYAQRARVKADWL 109

Query: 200 APKPKNLDFVQAAGLPLAIETA-------YEGLERTGFSAGKS-ILVLNGSGGVGSLVI 250
            P P+ L   QA     AI TA          LE  G + G   +LV   +GGVGS+ +
Sbjct: 110 VPLPEGLSARQAM----AIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAV 164

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 324

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 66.0 bits (162), Expect = 2e-12
 Identities = 59/203 (29%), Positives = 82/203 (40%), Gaps = 46/203 (22%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAA-----LN---------PVDGK 129
           MKA  Y  +G  D+ + +E V  P VK  +V IKV         L+         P +G 
Sbjct: 1   MKAARY--HGRKDI-RVEE-VPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGH 56

Query: 130 RRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV------YGDINEKALEGP- 182
                   T    P   G++ +GVVV+VG+ V  FK GD V                G  
Sbjct: 57  P-----HLTGETAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLY 111

Query: 183 ---KQFGS---------LAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTG 229
                 G           AEY  V    +   P N+   +AA + PLA+  A+  + R+G
Sbjct: 112 NLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAV--AWHAVRRSG 169

Query: 230 FSAGKSILVLNGSGGVGSLVIQV 252
           F  G + LVL G+G +G L I  
Sbjct: 170 FKPGDTALVL-GAGPIGLLTILA 191

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 65.5 bits (160), Expect = 3e-12
 Identities = 49/192 (25%), Positives = 68/192 (35%), Gaps = 44/192 (22%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E++ V   K  +V IKVVA  +   D     GK     +PLP + G++ AG+V  +G  V
Sbjct: 16  EEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP---TPLPVILGHEGAGIVESIGPGV 72

Query: 162 KEFKEGDEVY---------------GDIN-----------EKALEGPKQF---------- 185
              K GD+V                   N               +G  +F          
Sbjct: 73  TTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHF 132

Query: 186 ---GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERT-GFSAGKSILVLNG 241
               + AEYT V E  LA    +    +   +     T Y     T   + G +  V  G
Sbjct: 133 LGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVF-G 191

Query: 242 SGGVGSLVIQVC 253
            GGVG  VI  C
Sbjct: 192 LGGVGLSVIMGC 203

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 50/177 (28%), Positives = 72/177 (40%), Gaps = 49/177 (27%)

Query: 107 PQVKEDQVLIKVVAAAL-----------NPVDGKRRQGKFKATDSPLPTVPGYDVAGVVV 155
           P     +VL++V    +           NP              +  P + G++++G VV
Sbjct: 20  PVPGAGEVLVRVKRVGICGSDLHIYHGRNPF-------------ASYPRILGHELSGEVV 66

Query: 156 KVGTQVKEFKEGDEVYGDI-------------------NEKALEGPKQFGSLAEYTAVEE 196
           +VG  V   K GD V  D                    N + L G  + G  AEY  V  
Sbjct: 67  EVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVL-GVHRDGGFAEYIVVPA 125

Query: 197 RLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQV 252
             L   P+ L   QAA + PLAI      + R G +AG ++LV+ G+G +G  VIQV
Sbjct: 126 DAL-LVPEGLSLDQAALVEPLAI--GAHAVRRAGVTAGDTVLVV-GAGPIGLGVIQV 178

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 57/187 (30%), Positives = 76/187 (40%), Gaps = 25/187 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA    E GG   L+  E+  VP     +VLIKV A  +   D   ++G         P
Sbjct: 1   YKAVQVTEPGGP--LELVER-DVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGL--SYP 55

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV----------------YGDI---NEKALEGPKQ 184
            VPG++V G +  VG  V  +K GD V                 GD        + G  +
Sbjct: 56  RVPGHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTR 115

Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGG 244
            G  AEY       LA  P +LD  +AA L  A  T +  L  +G   G  + V  G GG
Sbjct: 116 DGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNALRNSGAKPGDLVAVQ-GIGG 174

Query: 245 VGSLVIQ 251
           +G L +Q
Sbjct: 175 LGHLAVQ 181

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 54/158 (34%), Positives = 71/158 (44%), Gaps = 18/158 (11%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E + +  + E  VLIKV  ++LN  D     GK     S  P +PG D AG VV   ++ 
Sbjct: 17  ETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRS-YPMIPGIDAAGTVVS--SED 73

Query: 162 KEFKEGDEV----YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLA 217
             F+EGDEV    YG        G    G  ++Y  V    L P P+ L   +A  L  A
Sbjct: 74  PRFREGDEVIVTGYG-------LGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTA 126

Query: 218 IETA---YEGLERTGFSAG-KSILVLNGSGGVGSLVIQ 251
             TA      LER G +     +LV   +GGVGSL + 
Sbjct: 127 GFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVA 164

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 49/193 (25%), Positives = 72/193 (37%), Gaps = 49/193 (25%)

Query: 94  GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVD------GKRRQGKFKATDSPLPTVPG 147
           G   L+  E+  +P+    +VL++V A  +   D      G  R G F   +   P V G
Sbjct: 6   GPGDLRL-EERPIPEPGPGEVLVRVRAVGICGSDVHYYKHG--RIGDFVVKE---PMVLG 59

Query: 148 YDVAGVVVKVGTQVKEFKEGDEVYGDINEKALE-------------G------------- 181
           ++ AG VV VG+ V   K GD V       A+E             G             
Sbjct: 60  HESAGTVVAVGSGVTHLKVGDRV-------AIEPGVPCRTCEFCKSGRYNLCPDMRFAAT 112

Query: 182 PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLN 240
           P   G+L  Y           P N+   + A + PL++        R G   G ++LV  
Sbjct: 113 PPVDGTLCRYVNHPADFCHKLPDNVSLEEGALVEPLSV--GVHACRRAGVRPGDTVLVF- 169

Query: 241 GSGGVGSLVIQVC 253
           G+G +G L   V 
Sbjct: 170 GAGPIGLLTAAVA 182

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 49/155 (31%), Positives = 70/155 (45%), Gaps = 14/155 (9%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           + +T+  + E  VLI+V  +++N  DG       K      P +PG D+AG VV+  +  
Sbjct: 18  KNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKR-YPFIPGIDLAGTVVE--SND 74

Query: 162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQA-----AGLPL 216
             FK GDEV   I      G    G  +EY  V    + P PK L   +A     AG   
Sbjct: 75  PRFKPGDEV---IVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTA 131

Query: 217 AIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVI 250
           A+  +   LE  G +     +LV   +GGVGSL +
Sbjct: 132 AL--SIHRLEENGLTPEQGPVLVTGATGGVGSLAV 164

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 61.4 bits (150), Expect = 5e-11
 Identities = 49/190 (25%), Positives = 74/190 (38%), Gaps = 45/190 (23%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E+V +      +VL+++ AA L   D     G      +PLP V G++ AGVV +VG  V
Sbjct: 16  EEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDL---PAPLPAVLGHEGAGVVEEVGPGV 72

Query: 162 KEFKEGDEV-------------------------YGDINEKALEGPKQF----------- 185
              K GD V                          G +  +  +G ++F           
Sbjct: 73  TGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMC 132

Query: 186 --GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG--LERTGFSAGKSILVLNG 241
             G+ AEYT V E  +     ++   +AA L   + T   G  +       G ++ V+ G
Sbjct: 133 GLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGV-GAVVNTARVRPGDTVAVI-G 190

Query: 242 SGGVGSLVIQ 251
            GGVG   IQ
Sbjct: 191 CGGVGLNAIQ 200

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 52/204 (25%), Positives = 69/204 (33%), Gaps = 45/204 (22%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFKAT 138
             A +Y   G V +    E+   P      VLI+V A       L+   G          
Sbjct: 2   KAAVVYVGGGDVRL----EEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPG-- 55

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVY-----------------------GDIN 175
                 + G++  G VV+VG  V+ FK GD V                            
Sbjct: 56  ----DIILGHEFVGEVVEVG-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFY 110

Query: 176 EKALEGPKQFGSLAEYTAV-EERLLAPKPKNLDFVQAAGL--PLAIETAYEGLERTGFSA 232
             A  G    G  AEY  V  +  LA  P  +D   AA L  PLA  TAY G        
Sbjct: 111 GYAGLGGGIDGGFAEYVRVPADFNLAKLPDGIDEEAAA-LTEPLA--TAYHGHAERAAVR 167

Query: 233 GKSILVLNGSGGVGSLVIQVCYYY 256
               +V+ G+G +G L I +    
Sbjct: 168 PGGTVVVVGAGPIGLLAIALAKLL 191

Length = 350

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 12/132 (9%)

Query: 84  MKAWLYGEYGG-VDVLKFD-EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP 141
           MKA L  EYG  ++V +    +  VP+    +VLIKV AA +NP D    +G++  +   
Sbjct: 1   MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQY-GSTKA 59

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEK-ALEGPKQFGSLAEYTAVEERLLA 200
           LP  PG++ +G VV  G        G      I ++ A      +G+ AEY   + +   
Sbjct: 60  LPVPPGFEGSGTVVAAG-------GGPLAQSLIGKRVAFLAG-SYGTYAEYAVADAQQCL 111

Query: 201 PKPKNLDFVQAA 212
           P P  + F Q A
Sbjct: 112 PLPDGVSFEQGA 123

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 58.3 bits (142), Expect = 6e-10
 Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 27/138 (19%)

Query: 140 SPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV--------------------------YGD 173
           +  P VPG+++ G+VV VG++V +FK GD V                             
Sbjct: 51  TKYPLVPGHEIVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVT 110

Query: 174 INEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAG 233
            N K  +G    G  A++  V+ER +   P+ LD   AA L  A  T Y  L+R G   G
Sbjct: 111 YNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGITVYSPLKRNGVGPG 170

Query: 234 KSILVLNGSGGVGSLVIQ 251
           K + V+ G GG+G L ++
Sbjct: 171 KRVGVV-GIGGLGHLAVK 187

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 48/154 (31%), Positives = 67/154 (43%), Gaps = 20/154 (12%)

Query: 101 DEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ 160
           D  V +P   E  VL+K     +N  D     G++     P P   G++  G VV VG  
Sbjct: 22  DVPVPLPGPGE--VLVKNRFVGINASDINFTAGRYDPGVKP-PFDCGFEGVGEVVAVGEG 78

Query: 161 VKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE- 219
           V +FK GD V              FG+ AEY  V  R   P P+    ++   LPL +  
Sbjct: 79  VTDFKVGDAV----------ATMSFGAFAEYQVVPARHAVPVPE----LKPEVLPLLVSG 124

Query: 220 -TAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQ 251
            TA   LE  G   +G+++LV   +GG G   +Q
Sbjct: 125 LTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQ 158

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 54.9 bits (133), Expect = 8e-09
 Identities = 53/180 (29%), Positives = 75/180 (41%), Gaps = 40/180 (22%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVD------GKRRQGKFKATDSPLPTVPGYDVAGVVV 155
            +V VP+    +VLIKV+AA++   D       +  Q + K      P + G++ AG VV
Sbjct: 16  VEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKP-----PLIFGHEFAGEVV 70

Query: 156 KVGTQVKEFKEGDEVYGDI-------------------NEKALEGPKQFGSLAEYTAVEE 196
           +VG  V   K GD V  +                    N K L G    G  AEY  V E
Sbjct: 71  EVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKIL-GVDTDGCFAEYVVVPE 129

Query: 197 RLLAPKPKNLDFVQAAGL-PL--AIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVC 253
             L    K++    A+   PL  A+ T        G  +GKS+L+  G G +G + I V 
Sbjct: 130 ENLWKNDKDIPPEIASIQEPLGNAVHTVL-----AGDVSGKSVLIT-GCGPIGLMAIAVA 183

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 54/200 (27%), Positives = 79/200 (39%), Gaps = 37/200 (18%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQ-VLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           MKA ++   G V V    E+V +PQ+++    ++KV AAA+   D    +G      S  
Sbjct: 1   MKAVVFKGPGDVRV----EEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP---STP 53

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVY---------------GDI---NEKALEGPKQ 184
             V G++  G VV+VG +V+  K GD V                G      +  L G   
Sbjct: 54  GFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAG 113

Query: 185 FGSL----AEYTAV--EERLLAPKPKNLDFVQAAGLPLA--IETAYEGLERTGFSAGKSI 236
             +L    AEY  V   +  L   P  L     A L L   + T Y G +R     G ++
Sbjct: 114 SPNLDGAQAEYVRVPFADGTLLKLPDGL--SDEAALLLGDILPTGYFGAKRAQVRPGDTV 171

Query: 237 LVLNGSGGVGSLVIQVCYYY 256
            V+ G G VG   +      
Sbjct: 172 AVI-GCGPVGLCAVLSAQVL 190

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 42/189 (22%), Positives = 62/189 (32%), Gaps = 45/189 (23%)

Query: 104 VTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE 163
           V  P+  E  V IK++A ++   D    +G      +  P + G++ AG+V  VG  V  
Sbjct: 22  VAPPKANE--VRIKMLATSVCHTDILAIEGFKA---TLFPVILGHEGAGIVESVGEGVTN 76

Query: 164 FKEGDEVY-----------------------GDINEKALE--GPKQF------------- 185
            K GD+V                           NE  L   G  +F             
Sbjct: 77  LKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGT 136

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGG 244
            + ++YT V+E  +A             L     T Y     T     G ++ V  G G 
Sbjct: 137 STFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVF-GLGA 195

Query: 245 VGSLVIQVC 253
           VG   I   
Sbjct: 196 VGLSAIMGA 204

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 37/136 (27%), Positives = 59/136 (43%), Gaps = 26/136 (19%)

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEV-YGDI-------------------------NE 176
           P VPG+++ G+V K+G  VK+FKEGD V  G I                         N 
Sbjct: 67  PIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNS 126

Query: 177 KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSI 236
              +G K +G  ++   V++  +   P NL     A L  A  T Y  ++  G +     
Sbjct: 127 IGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKH 186

Query: 237 LVLNGSGGVGSLVIQV 252
           L + G GG+G + +++
Sbjct: 187 LGVAGLGGLGHVAVKI 202

Length = 360

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 46/193 (23%), Positives = 73/193 (37%), Gaps = 49/193 (25%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP---LPTVPGYDVAGVVVKVG 158
           E++ +   K  +VL+K+VA+ L   D     G     D P    P + G++ AGVV KVG
Sbjct: 17  EEIELDDPKAGEVLVKLVASGLCHSDEHLVTG-----DLPMPRYPILGGHEGAGVVTKVG 71

Query: 159 TQVKEFKEGDEV--------------------YGDINEKALEGPK--------------- 183
             V   K GD V                      D+    L G +               
Sbjct: 72  PGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISDGTYRFHADGQDV 131

Query: 184 -QF---GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY-EGLERTGFSAGKSILV 238
            Q    G+ +EYT V E  +     ++   +A  +   + T +   +       G +++V
Sbjct: 132 GQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNIADVRPGDTVVV 191

Query: 239 LNGSGGVGSLVIQ 251
           + G GGVG   +Q
Sbjct: 192 M-GIGGVGINAVQ 203

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 42/190 (22%), Positives = 62/190 (32%), Gaps = 44/190 (23%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E+V +   +  +VL+++ A  +   D     G         P V G++ AG+V  VG  V
Sbjct: 18  EEVDLDPPRAGEVLVRITATGVCHTDAHTLSG---DDPEGFPAVLGHEGAGIVEAVGEGV 74

Query: 162 KEFKEGDEV------------------------YGDINEKA--LEGPKQF---------- 185
              K GD V                              K    +G  +           
Sbjct: 75  TSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHY 134

Query: 186 ---GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNG 241
               + AEYT V E  L     +    +A  L   + T    +  T     G ++ V  G
Sbjct: 135 LGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVF-G 193

Query: 242 SGGVGSLVIQ 251
            GGVG   IQ
Sbjct: 194 LGGVGLAAIQ 203

Length = 366

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 48/178 (26%), Positives = 69/178 (38%), Gaps = 29/178 (16%)

Query: 98  LKFDEKVTVPQVKEDQVLIKVVAAALNPVD-GKRRQGKFKATDSPLPTVPGYDVAGVVVK 156
           L+ +E    P+    +V ++V A  +   D    + G F       P V G++V+GVV  
Sbjct: 9   LRVEE-RPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEA 67

Query: 157 VGTQVKEFKEGDEV------YGDINEKALEG-----------------PKQFGSLAEYTA 193
           VG  V     G  V           +    G                 P   G   EY  
Sbjct: 68  VGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLV 127

Query: 194 VEERLLAPKPKNLDFVQAA-GLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVI 250
           V+     P P  L   +AA   PLA+  A   + R G  AGK +LV  G+G +G+LV+
Sbjct: 128 VDASQCVPLPDGLSLRRAALAEPLAV--ALHAVNRAGDLAGKRVLV-TGAGPIGALVV 182

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 47/159 (29%), Positives = 67/159 (42%), Gaps = 26/159 (16%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVP--GYDVAGVVVKV-G 158
           E+V VP+  E QVL++ +  +L+P    R         S  P V      V G V KV  
Sbjct: 30  EEVDVPEPGEGQVLLRTLYLSLDPYMRGRMS----DAPSYAPPVELGEVMVGGTVAKVVA 85

Query: 159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLA---PKPKNL-DFVQAAGL 214
           +    F+ GD V G                 EY   +   L    P P  L  ++   G+
Sbjct: 86  SNHPGFQPGDIVVG------------VSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM 133

Query: 215 PLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQV 252
           P    TAY GL   G   AG++++V   +G VGS+V Q+
Sbjct: 134 PGL--TAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQI 170

Length = 340

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 49.7 bits (119), Expect = 4e-07
 Identities = 52/165 (31%), Positives = 74/165 (44%), Gaps = 20/165 (12%)

Query: 92  YGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVP---GY 148
           +GG +VL+  E  T     E++V ++  A  +N +D   R G +     P P++P   G 
Sbjct: 10  HGGPEVLQAVE-FTPADPAENEVQVENKAIGINYIDTYIRSGLY-----PPPSLPSGLGT 63

Query: 149 DVAGVVVKVGTQVKEFKEGDEV-YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLD 207
           + AGVV KVG+ VK  K GD V Y    + AL      G+ +    V     A  P  + 
Sbjct: 64  EAAGVVSKVGSGVKHIKVGDRVVYA---QSAL------GAYSSVHNVPADKAAILPDAIS 114

Query: 208 FVQAAGLPLAIETAYEGLERT-GFSAGKSILVLNGSGGVGSLVIQ 251
           F QAA   L   T Y  L +T      +  L    +GGVG +  Q
Sbjct: 115 FEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQ 159

Length = 327

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 49.4 bits (119), Expect = 5e-07
 Identities = 47/184 (25%), Positives = 72/184 (39%), Gaps = 48/184 (26%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVD---------GKRRQGKFKATDSPLPTVPGYDVAG 152
             V VP+   + VLIKV   A+   D          ++          P+P V G++  G
Sbjct: 16  TDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKT--------IPVPMVVGHEFVG 67

Query: 153 VVVKVGTQVKEFKEGDEVYG-------------------DINEKALEGPKQFGSLAEYTA 193
            VV+VG++V  FK GD V G                     N K + G  + G+ AEY  
Sbjct: 68  EVVEVGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGV-GVNRPGAFAEYLV 126

Query: 194 VEERLLAPKPKNLDFVQAAGL-PL--AIETAYEG-LERTGFSAGKSILVLNGSGGVGSLV 249
           +    +   P ++    AA   P   A+ TA    L       G+ +L+  G+G +G + 
Sbjct: 127 IPAFNVWKIPDDIPDDLAAIFDPFGNAVHTALSFDL------VGEDVLI-TGAGPIGIMA 179

Query: 250 IQVC 253
             V 
Sbjct: 180 AAVA 183

Length = 341

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 50/190 (26%), Positives = 74/190 (38%), Gaps = 37/190 (19%)

Query: 84  MKA-WLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           MKA  L G      +    E +  P+    + L++V+ A +   D +  +G       P 
Sbjct: 1   MKALVLDG-----GLDLRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKG-----YYPF 50

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDIN-------------------EKALEGPK 183
           P VPG++  G+V +      E   G  V G+IN                      L    
Sbjct: 51  PGVPGHEFVGIVEEGPEA--ELV-GKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVD 107

Query: 184 QFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNGS 242
           + G+ AEY  +    L   P  +   QA    PLA   A E LE+   + G  + VL G 
Sbjct: 108 RDGAFAEYLTLPLENLHVVPDLVPDEQAVFAEPLA--AALEILEQVPITPGDKVAVL-GD 164

Query: 243 GGVGSLVIQV 252
           G +G L+ QV
Sbjct: 165 GKLGLLIAQV 174

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 48.6 bits (117), Expect = 9e-07
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E V +   + D+VL+++VA  +   D   R G      +PLP V G++ AGVV  VG+ V
Sbjct: 18  EDVELDDPRPDEVLVRIVATGICHTDLVVRDG---GLPTPLPAVLGHEGAGVVEAVGSAV 74

Query: 162 KEFKEGDEV 170
              K GD V
Sbjct: 75  TGLKPGDHV 83

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 36/141 (25%), Positives = 61/141 (43%), Gaps = 29/141 (20%)

Query: 140 SPLPTVPGYDVAGVVVKVGTQVKEFKEGD--------------------------EVYGD 173
           S  P +PG+++ G+  KVG  V +FKEGD                          +V   
Sbjct: 58  SRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFT 117

Query: 174 INEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFS-- 231
            N ++ +G +  G  ++   V+ R +   P  L     A L  A  T Y  ++  G +  
Sbjct: 118 YNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKE 177

Query: 232 AGKSILVLNGSGGVGSLVIQV 252
           +GK + V NG GG+G + +++
Sbjct: 178 SGKRLGV-NGLGGLGHIAVKI 197

Length = 375

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 46/175 (26%), Positives = 74/175 (42%), Gaps = 44/175 (25%)

Query: 112 DQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV- 170
           + V+IKV+   +   D  + +     ++ P+  VPG++V G VV+VG+ V +F  GD V 
Sbjct: 35  EDVVIKVIYCGICHTDLHQIKNDLGMSNYPM--VPGHEVVGEVVEVGSDVSKFTVGDIVG 92

Query: 171 ----------------------------YGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
                                       Y D+       P Q G  A    V+++ +   
Sbjct: 93  VGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDG--KPTQ-GGFASAMVVDQKFVVKI 149

Query: 203 PKNLDFVQAAGLPLAIETAYE-----GLERTGFSAGKSILVLNGSGGVGSLVIQV 252
           P+ +   QAA L  A  T Y      GL+++G   G  IL   G GGVG + +++
Sbjct: 150 PEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGG--IL---GLGGVGHMGVKI 199

Length = 357

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 42/123 (34%), Positives = 53/123 (43%), Gaps = 24/123 (19%)

Query: 147 GYDVAGVVVKVGTQVKEFKEGDEVY-GDIN-----EKALEG-PKQ---------F----- 185
           G++  GVV +VG++VK+FK GD V    I        A  G P Q         F     
Sbjct: 58  GHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKD 117

Query: 186 GSLAEYTAVEERL--LAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSG 243
           G  AEY  V +    LAP P  L   QA  LP  + T + G E      G ++ V  G G
Sbjct: 118 GVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTGFHGAELANIKLGDTVAVF-GIG 176

Query: 244 GVG 246
            VG
Sbjct: 177 PVG 179

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 50/192 (26%), Positives = 74/192 (38%), Gaps = 41/192 (21%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAA-----LNPVDGKRRQGKFKA 137
           MKA +Y   G + +    E+V  P+++     +++V A +     L+   G         
Sbjct: 1   MKALVYLGPGKIGL----EEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGG-------V 49

Query: 138 TDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV-----------------YGDINEKALE 180
             +    + G++  G VV+VG+ VK  K GD V                 Y    E  L 
Sbjct: 50  PGAKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLW 109

Query: 181 GPKQF----GSLAEYTAVEE--RLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
           G K      G  AEY  V      LA  P  L    A  L   + T + G E  G   G 
Sbjct: 110 GWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGAELAGIKPGS 169

Query: 235 SILVLNGSGGVG 246
           ++ V+ G+G VG
Sbjct: 170 TVAVI-GAGPVG 180

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 45.9 bits (110), Expect = 7e-06
 Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 36/166 (21%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVP------GYDVAGVVV 155
            +V +P++K+ +VL++ +  +++P      +G      S  P V       G  V G VV
Sbjct: 23  VEVPLPELKDGEVLVRTLYLSVDPY----MRGWMSDAKSYSPPVQLGEPMRGGGV-GEVV 77

Query: 156 KVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLP 215
           +  ++  +FK GD V G            F    EY  V+      K   LD      L 
Sbjct: 78  E--SRSPDFKVGDLVSG------------FLGWQEYAVVDGASGLRK---LDPSLGLPLS 120

Query: 216 LAIE-------TAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQVC 253
             +        TAY GL   G    G++++V   +G VGS+V Q+ 
Sbjct: 121 AYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIA 166

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 33/185 (17%)

Query: 90  GEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQ-GKFKATDSPLPTVPGY 148
             YG         +V VP+    +VLIKV+A ++   D       ++  +    P V G+
Sbjct: 7   PGYGAELT-----EVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGH 61

Query: 149 DVAGVVVKVGTQVKEFKEGDEVYGDIN------------------EKALEGPKQFGSLAE 190
           +VAG VV +G  V+  K GD V  + +                     + G    G  AE
Sbjct: 62  EVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAE 121

Query: 191 YTAVEERLLAPKPKNLDFVQAAGL-PL--AIETAYEGLERTGFSAGKSILVLNGSGGVGS 247
           Y  V  + +   PK++    A    PL  A+ T   G       +GKS+LV  G+G +G 
Sbjct: 122 YAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVLAGP-----ISGKSVLVT-GAGPIGL 175

Query: 248 LVIQV 252
           + I V
Sbjct: 176 MAIAV 180

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 42/184 (22%), Positives = 69/184 (37%), Gaps = 48/184 (26%)

Query: 102 EKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK 156
            +V +P ++   VL++V  A      ++ V G+R +        PLP + G++  G VV 
Sbjct: 16  REVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRV-------PLPIILGHEGVGRVVA 68

Query: 157 VGTQV------KEFKEGDEV---------------------------YGDINEKALEGPK 183
           +G  V      +  K GD V                           YG   E + + P 
Sbjct: 69  LGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGH--EASCDDPH 126

Query: 184 QFGSLAEYTAVE-ERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGS 242
             G  AE+  +     +   P N+    AA    A+ T    L+R G       +V+ G+
Sbjct: 127 LSGGYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGA 186

Query: 243 GGVG 246
           G +G
Sbjct: 187 GPLG 190

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 13/74 (17%)

Query: 102 EKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK 156
           E+V +      +VL+K+ AA      L+ ++G R +        PLP   G++ AGVVV+
Sbjct: 24  EEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR--------PLPMALGHEAAGVVVE 75

Query: 157 VGTQVKEFKEGDEV 170
           VG  V + + GD V
Sbjct: 76  VGEGVTDLEVGDHV 89

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E++ V   K  +V IK+VA  +   D     GK     +P P + G++ AG+V  VG  V
Sbjct: 23  EEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV---TPFPVILGHEAAGIVESVGEGV 79

Query: 162 KEFKEGDEV 170
              K GD+V
Sbjct: 80  TTVKPGDKV 88

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 47/172 (27%), Positives = 73/172 (42%), Gaps = 14/172 (8%)

Query: 84  MKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           M+A ++ ++G   DVL+  E    P     +VL++   + ++  D    +G +      L
Sbjct: 1   MRAAVHTQFGDPADVLEIGEVPK-PTPGAGEVLVRTTLSPIHNHDLWTIRGTY-GYKPEL 58

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P + G +  GVV  VG  VK  + G  V       A+      G+ AEY       L P 
Sbjct: 59  PAIGGSEAVGVVDAVGEGVKGLQVGQRV-------AVAP--VHGTWAEYFVAPADGLVPL 109

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGG-VGSLVIQVC 253
           P  +    AA L     +A   L+  G   G+  L+ N +GG VG LV  + 
Sbjct: 110 PDGISDEVAAQLIAMPLSALMLLDFLGVKPGQ-WLIQNAAGGAVGKLVAMLA 160

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 37/124 (29%), Positives = 48/124 (38%), Gaps = 33/124 (26%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP----------LPTVPGYDVA 151
           E V VP +K D++LI+V A  +   D          TD             P V G++ +
Sbjct: 42  EDVPVPNLKPDEILIRVKACGICGSDIH-----LYETDKDGYILYPGLTEFPVVIGHEFS 96

Query: 152 GVVVKVGTQVKEFKEGDEVY---------------GDIN---EKALEGPKQFGSLAEYTA 193
           GVV K G  VK F++GD V                G  N        G    G+ AEY A
Sbjct: 97  GVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIA 156

Query: 194 VEER 197
           V  R
Sbjct: 157 VNAR 160

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 46/187 (24%), Positives = 76/187 (40%), Gaps = 28/187 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           MK+ +    G V V     +  +P++K +D VL+KV ++ L   D  R    FK      
Sbjct: 1   MKSVVNDTDGIVRV----AESPIPEIKHQDDVLVKVASSGLCGSDIPR---IFKNGAHYY 53

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEV------------------YGDINEKALEGPKQ 184
           P   G++ +G V  VG+ V +   GD V                  Y    +    G ++
Sbjct: 54  PITLGHEFSGYVEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRR 113

Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGG 244
            G  AEY  V+ + L   P ++     A +   I              GK+++++ G+G 
Sbjct: 114 DGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAFHLAQGCEGKNVIII-GAGT 171

Query: 245 VGSLVIQ 251
           +G L IQ
Sbjct: 172 IGLLAIQ 178

Length = 347

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 44/161 (27%), Positives = 59/161 (36%), Gaps = 30/161 (18%)

Query: 113 QVLIKVVA---------AALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV-K 162
           QVL+KV+A         A  +P       G     D     V G++  G VV  G    +
Sbjct: 25  QVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDYGPGTER 84

Query: 163 EFKEGDEV------------YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQ 210
           + K G  V               I       P+  G  AEY  + E LL   P  L    
Sbjct: 85  KLKVGTRVTSLPLLLCGQGASCGI----GLSPEAPGGYAEYMLLSEALLLRVPDGLSMED 140

Query: 211 AAGL-PLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVI 250
           AA   PLA+      + R   + G+  LV+ G G +G  VI
Sbjct: 141 AALTEPLAV--GLHAVRRARLTPGEVALVI-GCGPIGLAVI 178

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 12/74 (16%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVD-----GKRRQGKFKATDSPLPTVPGYDVAGVVVK 156
           E+V V   K  +V IK++A  +   D     G   +G F       P + G++ AG+V  
Sbjct: 18  EEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLF-------PVILGHEGAGIVES 70

Query: 157 VGTQVKEFKEGDEV 170
           VG  V   K GD V
Sbjct: 71  VGEGVTSVKPGDHV 84

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 50/206 (24%), Positives = 77/206 (37%), Gaps = 60/206 (29%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQ-VLIKVVAAA-----LNPVDGKRRQGKFKA 137
           MKA +YG  G V V    E V  P+++     ++++   A     L+   G+        
Sbjct: 1   MKAVVYGGPGNVAV----EDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGR-------- 48

Query: 138 TDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDIN---------EKALEG------P 182
           T +    V G++  G V +VG+ V+  K GD V    N         ++ L G      P
Sbjct: 49  TGAEPGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNP 108

Query: 183 KQFGSL-------------AEYTAV--EERLLAPKPK------NLDFVQAAG-LPLAIET 220
            + G               AEY  V   +  L   P         D++  +   P    T
Sbjct: 109 GRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDDYLMLSDIFP----T 164

Query: 221 AYEGLERTGFSAGKSILVLNGSGGVG 246
            + GLE  G   G ++ V  G+G VG
Sbjct: 165 GWHGLELAGVQPGDTVAVF-GAGPVG 189

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 28/178 (15%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKR-RQG-KFKATDSPL---PTVPGYDVAGVVVK 156
           EK  +P++ +D++L++V++ +L     K   QG   K   + L   P + G++ AG ++K
Sbjct: 17  EKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILK 76

Query: 157 VGTQVK-EFKEGDEVYGDINEKALEGP-------KQFGSLAEYTAVEERLLA----PKPK 204
           VG + + ++K G            +GP          G LA Y  +   ++        +
Sbjct: 77  VGKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYE 136

Query: 205 NLDFVQAAGL-PLA-IETAYEGLERT---------GFSAGKSILVLNGSGGVGSLVIQ 251
              + +A+ + PL+ +  AY               G   G +  +L G+G +G + I 
Sbjct: 137 GDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAID 194

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 410

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	99.97
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	99.97
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.97
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.97
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	99.97
PLN02740	381	Alcohol dehydrogenase-like	99.96
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.96
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.96
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.96
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	99.96
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.96
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.96
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.96
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.96
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.96
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.96
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.95
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.95
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.95
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.95
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.95
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.95
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.95
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.95
PLN02827	378	Alcohol dehydrogenase-like	99.95
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	99.95
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.94
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.94
PTZ00354	334	alcohol dehydrogenase; Provisional	99.94
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.94
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.94
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.94
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.94
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.94
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	99.94
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	99.94
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.93
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.93
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	99.93
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.93
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	99.93
PRK10083	339	putative oxidoreductase; Provisional	99.93
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	99.93
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.93
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	99.93
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	99.93
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.93
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	99.93
PRK13771	334	putative alcohol dehydrogenase; Provisional	99.93
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.93
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.93
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.93
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	99.93
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.93
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	99.93
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.93
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	99.93
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.93
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.93
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	99.93
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	99.93
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.93
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.92
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	99.92
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	99.92
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	99.92
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.92
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.92
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	99.92
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	99.92
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.92
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.92
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	99.92
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.92
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.92
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.92
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.92
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.92
cd08252	336	AL_MDR Arginate lyase and other MDR family members	99.92
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	99.92
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	99.92
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.92
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	99.92
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	99.92
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.91
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.91
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.91
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	99.91
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	99.91
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	99.91
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	99.91
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.91
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.91
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	99.9
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	99.9
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.9
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	99.9
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.9
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	99.9
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	99.9
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	99.9
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	99.89
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.89
PLN02702	364	L-idonate 5-dehydrogenase	99.89
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.89
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.89
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	99.89
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	99.89
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	99.88
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.88
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.88
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	99.88
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	99.87
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	99.87
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.87
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.84
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.82
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.81
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.8
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.76
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.7
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.63
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.47
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	94.41
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	91.71
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	91.17
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	90.76
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	90.66
PRK08324	681	short chain dehydrogenase; Validated	90.11
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	89.33
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	89.31
PLN03209	576	translocon at the inner envelope of chloroplast su	88.95
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	88.77
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	88.71
PRK08306	296	dipicolinate synthase subunit A; Reviewed	88.56
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	87.52
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	86.93
PRK05866	293	short chain dehydrogenase; Provisional	85.73
PF10686	71	DUF2493: Protein of unknown function (DUF2493); In	85.22
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	84.59
PRK06128	300	oxidoreductase; Provisional	83.68
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	83.61
PRK07985	294	oxidoreductase; Provisional	83.58
PLN02780	320	ketoreductase/ oxidoreductase	82.84
PLN02494	477	adenosylhomocysteinase	81.87
PTZ00414	100	10 kDa heat shock protein; Provisional	80.85
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	80.27
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	80.05

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.9e-37  Score=278.06  Aligned_cols=175  Identities=31%  Similarity=0.444  Sum_probs=159.8

Q ss_pred             ccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (262)
Q Consensus        81 p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~  160 (262)
                      +.+|||+++.+++++  ++++ +++.|+|+++||+|+|+|+|||++|+|.++|.++.  ..+|.++|||++|+|+++|++
T Consensus         1 ~~~mkA~~~~~~~~p--l~i~-e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~--~~~P~ipGHEivG~V~~vG~~   75 (339)
T COG1064           1 MMTMKAAVLKKFGQP--LEIE-EVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPV--PKLPLIPGHEIVGTVVEVGEG   75 (339)
T ss_pred             CcceEEEEEccCCCC--ceEE-eccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCC--CCCCccCCcceEEEEEEecCC
Confidence            457999999999998  7777 99999999999999999999999999999999887  448999999999999999999


Q ss_pred             CCCCCCCCEEEE-ecCc------------------cccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHH
Q 024775          161 VKEFKEGDEVYG-DINE------------------KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA  221 (262)
Q Consensus       161 v~~~~~Gd~V~~-~~~~------------------~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA  221 (262)
                      |+.|++||+|.. +...                  ....++..+|+|+||++++++.++++|+++++++||.++|+..|.
T Consensus        76 V~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~  155 (339)
T COG1064          76 VTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITT  155 (339)
T ss_pred             CccCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeE
Confidence            999999999987 3221                  123444568999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          222 YEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       222 ~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++.+++||++|+|.| .|++|.+++|+||++|++|+
T Consensus       156 y~alk~~~~~pG~~V~I~G-~GGlGh~avQ~Aka~ga~Vi  194 (339)
T COG1064         156 YRALKKANVKPGKWVAVVG-AGGLGHMAVQYAKAMGAEVI  194 (339)
T ss_pred             eeehhhcCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEE
Confidence            9999999999999999999 88999999999999999885

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=9.2e-34  Score=256.95  Aligned_cols=168  Identities=42%  Similarity=0.579  Sum_probs=154.1

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||++++.+.+.++.++++ +.+.|.|.+|||||||++++||+.|...++|..+ ...++|+++|.|++|+|+++|++|+.
T Consensus         1 mka~~~~~~g~~~~l~~~-e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~-~~~~~P~i~G~d~aG~V~avG~~V~~   78 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVV-EVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAP-PVRPLPFIPGSEAAGVVVAVGSGVTG   78 (326)
T ss_pred             CeEEEEeccCCCceeEEE-ecCCCCCCCCeEEEEEEEeecChHHHHhccCCCC-CCCCCCCcccceeEEEEEEeCCCCCC
Confidence            799999999999779898 9999999999999999999999999999998722 22568999999999999999999999


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCc
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGS  242 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~  242 (262)
                      |++||+|+.... .+     ..|+|+||+++|++.++++|+++++++|+++++++.|||+++.. .++++|++|||+||+
T Consensus        79 ~~~GdrV~~~~~-~~-----~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaa  152 (326)
T COG0604          79 FKVGDRVAALGG-VG-----RDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAA  152 (326)
T ss_pred             cCCCCEEEEccC-CC-----CCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCC
Confidence            999999999740 00     37999999999999999999999999999999999999999975 889999999999999


Q ss_pred             hHHHHHHHHHHHHcCCc
Q 024775          243 GGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       243 G~vG~~aiqlAk~~Ga~  259 (262)
                      |+||++++||||++|++
T Consensus       153 GgVG~~aiQlAk~~G~~  169 (326)
T COG0604         153 GGVGSAAIQLAKALGAT  169 (326)
T ss_pred             chHHHHHHHHHHHcCCc
Confidence            99999999999999964

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.5e-33  Score=243.58  Aligned_cols=180  Identities=31%  Similarity=0.407  Sum_probs=159.6

Q ss_pred             CCcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEe
Q 024775           78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (262)
Q Consensus        78 ~~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~v  157 (262)
                      +..|.+.++|.+..++....+++. +++.|+++++||+|+|+|+|||++|++.+.|..+.  .++|.++|||++|+|++|
T Consensus         4 ~~~p~k~~g~~~~~~~G~l~p~~~-~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~--s~~PlV~GHEiaG~Vvkv   80 (360)
T KOG0023|consen    4 MSIPEKQFGWAARDPSGVLSPEVF-SFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGL--SKYPLVPGHEIAGVVVKV   80 (360)
T ss_pred             ccCchhhEEEEEECCCCCCCccee-EcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCc--ccCCccCCceeeEEEEEE
Confidence            357999999999999886556667 88999999999999999999999999999999876  789999999999999999


Q ss_pred             CCCCCCCCCCCEEEE-ecCc-------------------------cccCCCCCCCceeeEEEecCCCeEECCCCCCHhhH
Q 024775          158 GTQVKEFKEGDEVYG-DINE-------------------------KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQA  211 (262)
Q Consensus       158 G~~v~~~~~Gd~V~~-~~~~-------------------------~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~a  211 (262)
                      |++|++|++||+|-+ +...                         ...++.-.+|+|++|+++++..++++|++++.+.|
T Consensus        81 Gs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~a  160 (360)
T KOG0023|consen   81 GSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASA  160 (360)
T ss_pred             CCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhc
Confidence            999999999999832 1111                         11233335677999999999999999999999999


Q ss_pred             hcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          212 AGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       212 a~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |-++|+..|.|..|++.++.||++|.|.| +|++|.+++|+||++|.+|+
T Consensus       161 APlLCaGITvYspLk~~g~~pG~~vgI~G-lGGLGh~aVq~AKAMG~rV~  209 (360)
T KOG0023|consen  161 APLLCAGITVYSPLKRSGLGPGKWVGIVG-LGGLGHMAVQYAKAMGMRVT  209 (360)
T ss_pred             cchhhcceEEeehhHHcCCCCCcEEEEec-CcccchHHHHHHHHhCcEEE
Confidence            99999999999999999999999999999 66699999999999999985

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=8.4e-31  Score=230.29  Aligned_cols=172  Identities=24%  Similarity=0.312  Sum_probs=148.6

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCC-CCCCCCCCCCccEEEEEEEeCC
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~-~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      ..|+|+++.+.++   ++++ +.+.|++ .|+||+|++.++|||++|+|.+...... ...+.|.++|||.+|+|+++|+
T Consensus         3 ~~~~A~vl~g~~d---i~i~-~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~   78 (354)
T KOG0024|consen    3 ADNLALVLRGKGD---IRIE-QRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGD   78 (354)
T ss_pred             cccceeEEEccCc---eeEe-eCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcc
Confidence            4689999999988   7777 8899988 8999999999999999999999764332 2356799999999999999999


Q ss_pred             CCCCCCCCCEEEEecCccc-------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHH
Q 024775          160 QVKEFKEGDEVYGDINEKA-------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIET  220 (262)
Q Consensus       160 ~v~~~~~Gd~V~~~~~~~~-------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~t  220 (262)
                      +|+.+|+||||+.-..-.|                   +.-+..+|++++|++.+++.++||||+++++++|++ ..+..
T Consensus        79 ~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~-ePLsV  157 (354)
T KOG0024|consen   79 EVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALI-EPLSV  157 (354)
T ss_pred             cccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhcccc-cchhh
Confidence            9999999999986432111                   222235699999999999999999999999999887 22567


Q ss_pred             HHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       221 A~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      +|||.++++++.|++|||+| +|++|+++...||++||.
T Consensus       158 ~~HAcr~~~vk~Gs~vLV~G-AGPIGl~t~l~Aka~GA~  195 (354)
T KOG0024|consen  158 GVHACRRAGVKKGSKVLVLG-AGPIGLLTGLVAKAMGAS  195 (354)
T ss_pred             hhhhhhhcCcccCCeEEEEC-CcHHHHHHHHHHHHcCCC
Confidence            99999999999999999999 999999999999999984

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.97  E-value=1e-29  Score=216.49  Aligned_cols=170  Identities=35%  Similarity=0.442  Sum_probs=160.1

Q ss_pred             CcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      ..|...|-+++++.|..++++++ +.+.|+|.++|++||..|+|+|..|...++|.+.  +.+.|+++|-|++|+|++||
T Consensus         4 ~~p~~~k~i~v~e~Ggydvlk~e-d~pv~~papgel~iknka~GlNfid~y~RkGlY~--~~plPytpGmEaaGvVvAvG   80 (336)
T KOG1197|consen    4 ASPPLLKCIVVTEFGGYDVLKLE-DRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYD--PAPLPYTPGMEAAGVVVAVG   80 (336)
T ss_pred             CCCchheEEEEeccCCcceEEEe-eecCCCCCCCceEEeehhcCccHHHHHHhccccC--CCCCCcCCCcccceEEEEec
Confidence            45777999999999999999999 9999999999999999999999999999999874  37789999999999999999


Q ss_pred             CCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEE
Q 024775          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSIL  237 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~Vl  237 (262)
                      ++|+++++||+|..+.+         .|.|+|+..+|...++++|+.+++++++++.+..+|||..+++ ..+++|++||
T Consensus        81 ~gvtdrkvGDrVayl~~---------~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVl  151 (336)
T KOG1197|consen   81 EGVTDRKVGDRVAYLNP---------FGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVL  151 (336)
T ss_pred             CCccccccccEEEEecc---------chhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence            99999999999988653         8999999999999999999999999999999999999999976 6899999999


Q ss_pred             EEcCchHHHHHHHHHHHHcCCcc
Q 024775          238 VLNGSGGVGSLVIQVCYYYLEFF  260 (262)
Q Consensus       238 I~Ga~G~vG~~aiqlAk~~Ga~V  260 (262)
                      |+.|+|++|++++|+++..|+++
T Consensus       152 vhaAAGGVGlll~Ql~ra~~a~t  174 (336)
T KOG1197|consen  152 VHAAAGGVGLLLCQLLRAVGAHT  174 (336)
T ss_pred             EEeccccHHHHHHHHHHhcCcEE
Confidence            99999999999999999999975

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.97  E-value=4.6e-29  Score=226.17  Aligned_cols=172  Identities=30%  Similarity=0.361  Sum_probs=148.6

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||+++.+++.   ++++ +.+.|.++++||+||+.+++||++|++.+.+.... +..+|.++|||++|+|+++|++|+.
T Consensus         1 mka~~~~~~~~---l~~~-~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~-~~~~p~i~G~e~~G~V~~vG~~v~~   75 (339)
T cd08239           1 MRGAVFPGDRT---VELR-EFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRA-PAYQGVIPGHEPAGVVVAVGPGVTH   75 (339)
T ss_pred             CeEEEEecCCc---eEEE-ecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCc-cCCCCceeccCceEEEEEECCCCcc
Confidence            79999987654   7777 89999999999999999999999999988775432 1235789999999999999999999


Q ss_pred             CCCCCEEEEecCcccc-------------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          164 FKEGDEVYGDINEKAL-------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~-------------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      |++||+|+......|.                   .+....|+|+||++++...++++|+++++++++.+++++.|||++
T Consensus        76 ~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~  155 (339)
T cd08239          76 FRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHA  155 (339)
T ss_pred             CCCCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHH
Confidence            9999999886432110                   122346999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc-cC
Q 024775          225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF-FF  261 (262)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V~  261 (262)
                      ++++++++|++|+|+| +|++|++++|+||.+|++ |+
T Consensus       156 l~~~~~~~g~~vlV~G-~G~vG~~~~~~ak~~G~~~vi  192 (339)
T cd08239         156 LRRVGVSGRDTVLVVG-AGPVGLGALMLARALGAEDVI  192 (339)
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            9888999999999998 699999999999999998 64

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.97  E-value=1.1e-29  Score=224.94  Aligned_cols=170  Identities=25%  Similarity=0.282  Sum_probs=151.7

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ++|+++..++++|  |+++ ++++++|++|||+||+.++|+|++|.+.+.|..|   ..+|.++|||++|+|++||++|+
T Consensus         2 k~~aAV~~~~~~P--l~i~-ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p---~~~P~vLGHEgAGiVe~VG~gVt   75 (366)
T COG1062           2 KTRAAVAREAGKP--LEIE-EVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDP---EGFPAVLGHEGAGIVEAVGEGVT   75 (366)
T ss_pred             CceEeeeecCCCC--eEEE-EEecCCCCCCeEEEEEEEeeccccchhhhcCCCC---CCCceecccccccEEEEecCCcc
Confidence            5799999999988  7777 9999999999999999999999999999999877   44999999999999999999999


Q ss_pred             CCCCCCEEEEecCccc--------------------------------c-------CCCCCCCceeeEEEecCCCeEECC
Q 024775          163 EFKEGDEVYGDINEKA--------------------------------L-------EGPKQFGSLAEYTAVEERLLAPKP  203 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~--------------------------------~-------~~~~~~G~~ae~~~v~~~~~~~lP  203 (262)
                      ++++||+|+..+...|                                +       ..+-..++|+||.++++..++|++
T Consensus        76 ~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~  155 (366)
T COG1062          76 SVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKID  155 (366)
T ss_pred             ccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECC
Confidence            9999999987654111                                0       011123589999999999999999


Q ss_pred             CCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          204 KNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       204 ~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      ++.+++.++++.+...|++.++. .+++++|++|.|+| .|++|+++||-|+..||.
T Consensus       156 ~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~G-lGgVGlaaI~gA~~agA~  211 (366)
T COG1062         156 PDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFG-LGGVGLAAIQGAKAAGAG  211 (366)
T ss_pred             CCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEe-ccHhHHHHHHHHHHcCCc
Confidence            99999999999999999999875 58999999999999 999999999999999985

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=99.97  E-value=2.7e-29  Score=217.30  Aligned_cols=173  Identities=32%  Similarity=0.436  Sum_probs=161.3

Q ss_pred             CCcccceeEEEEcccCCc-ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEE
Q 024775           78 GTVPSEMKAWLYGEYGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (262)
Q Consensus        78 ~~~p~~~ka~v~~~~g~~-~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~  156 (262)
                      +.+|...|+++|.++|++ +++++. +.++|+....+|+||..++.|||+|+..++|.+|.. .++|.+-|+|++|+|+.
T Consensus        14 ~q~~~~~kalvY~~hgdP~kVlql~-~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvr-P~~PAVgGnEGv~eVv~   91 (354)
T KOG0025|consen   14 SQMPARSKALVYSEHGDPAKVLQLK-NLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVR-PELPAVGGNEGVGEVVA   91 (354)
T ss_pred             cccccccceeeecccCCchhhheee-cccCCCCCCCceeeeeeecCCChHHhhhhccccCCC-CCCCcccCCcceEEEEE
Confidence            457888999999999998 788888 999999988889999999999999999999999875 67789999999999999


Q ss_pred             eCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCE
Q 024775          157 VGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKS  235 (262)
Q Consensus       157 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~  235 (262)
                      ||+++++|++||+|+....        ..|+|++|.+.+++.++++++.++++.||.+..+-+|||..|+. .++++||+
T Consensus        92 vGs~vkgfk~Gd~VIp~~a--------~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~  163 (354)
T KOG0025|consen   92 VGSNVKGFKPGDWVIPLSA--------NLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDS  163 (354)
T ss_pred             ecCCcCccCCCCeEeecCC--------CCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCe
Confidence            9999999999999998764        47999999999999999999999999999999999999999975 79999999


Q ss_pred             EEEEcCchHHHHHHHHHHHHcCCcc
Q 024775          236 ILVLNGSGGVGSLVIQVCYYYLEFF  260 (262)
Q Consensus       236 VlI~Ga~G~vG~~aiqlAk~~Ga~V  260 (262)
                      |+-.||.++||++++|+||++|.+-
T Consensus       164 vIQNganS~VG~~ViQlaka~Gikt  188 (354)
T KOG0025|consen  164 VIQNGANSGVGQAVIQLAKALGIKT  188 (354)
T ss_pred             eeecCcccHHHHHHHHHHHHhCcce
Confidence            9999999999999999999999863

>PLN02740 Alcohol dehydrogenase-like

Probab=99.96  E-value=7.1e-29  Score=229.28  Aligned_cols=177  Identities=21%  Similarity=0.250  Sum_probs=149.9

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      -|.+||++++.++++.  +.++ +.+.|.++++||+|||.++|||++|++.+.|..+. ...+|.++|||++|+|+++|+
T Consensus         7 ~~~~mka~~~~~~~~~--~~~~-e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~-~~~~p~i~GhE~~G~V~~vG~   82 (381)
T PLN02740          7 KVITCKAAVAWGPGEP--LVME-EIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEA-QRAYPRILGHEAAGIVESVGE   82 (381)
T ss_pred             cceeeEEEEEecCCCC--cEEE-EeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcc-cCCCCccccccceEEEEEeCC
Confidence            3557999999988754  5566 88999999999999999999999999999887532 235789999999999999999


Q ss_pred             CCCCCCCCCEEEEecCccc------cC---------------------C---------------CCCCCceeeEEEecCC
Q 024775          160 QVKEFKEGDEVYGDINEKA------LE---------------------G---------------PKQFGSLAEYTAVEER  197 (262)
Q Consensus       160 ~v~~~~~Gd~V~~~~~~~~------~~---------------------~---------------~~~~G~~ae~~~v~~~  197 (262)
                      +++.|++||+|++.....|      ..                     +               ....|+|+||++++.+
T Consensus        83 ~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~  162 (381)
T PLN02740         83 GVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSA  162 (381)
T ss_pred             CCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehH
Confidence            9999999999987542211      00                     0               0025899999999999


Q ss_pred             CeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          198 LLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       198 ~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      .++++|+++++++++.+++.+.|||+++. ..++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus       163 ~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~G~vG~~a~q~ak~~G~~~Vi  227 (381)
T PLN02740        163 CVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFG-LGAVGLAVAEGARARGASKII  227 (381)
T ss_pred             HeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCCcEE
Confidence            99999999999999999999999999874 58899999999998 79999999999999999 454

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.96  E-value=9.6e-29  Score=227.48  Aligned_cols=173  Identities=28%  Similarity=0.338  Sum_probs=148.3

Q ss_pred             eeEEEEcccCC------cceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEe
Q 024775           84 MKAWLYGEYGG------VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (262)
Q Consensus        84 ~ka~v~~~~g~------~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~v  157 (262)
                      |||+++.++|.      ++.++++ +.+.|+++++||+|||.+++||++|++.+.|..+   ..+|.++|||++|+|+++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~-~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~---~~~p~i~GhE~~G~V~~v   76 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIE-EVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP---RPLPMALGHEAAGVVVEV   76 (371)
T ss_pred             CcceEEEecccccccccCCCceEE-EeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC---CCCCccCCccceeEEEEe
Confidence            89999999875      3668888 8999999999999999999999999999988653   346899999999999999


Q ss_pred             CCCCCCCCCCCEEEEecCccc------cC---------------C------------------CCCCCceeeEEEecCCC
Q 024775          158 GTQVKEFKEGDEVYGDINEKA------LE---------------G------------------PKQFGSLAEYTAVEERL  198 (262)
Q Consensus       158 G~~v~~~~~Gd~V~~~~~~~~------~~---------------~------------------~~~~G~~ae~~~v~~~~  198 (262)
                      |++++.+++||+|++.....|      ..               +                  ....|+|+||+++++..
T Consensus        77 G~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~  156 (371)
T cd08281          77 GEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRS  156 (371)
T ss_pred             CCCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccc
Confidence            999999999999987421111      00               0                  00137999999999999


Q ss_pred             eEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          199 LAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       199 ~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      ++++|+++++++++.+.+.+.|||+++. +.++++|++|+|+| +|++|++++|+||.+|+ +|+
T Consensus       157 ~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G-~G~vG~~a~~lak~~G~~~Vi  220 (371)
T cd08281         157 VVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVG-LGGVGLSALLGAVAAGASQVV  220 (371)
T ss_pred             eEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEE
Confidence            9999999999999999999999999974 58899999999998 79999999999999999 453

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.96  E-value=1.8e-28  Score=222.51  Aligned_cols=172  Identities=26%  Similarity=0.292  Sum_probs=147.1

Q ss_pred             EEEEcccCCc--ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           86 AWLYGEYGGV--DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        86 a~v~~~~g~~--~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||.+.++|.+  ..++++ +.+.|+++++||+|||.+++||++|++.+.|.++.  ..+|.++|||++|+|+++|+++++
T Consensus         1 ~~~~~~~g~~~~~~l~~~-~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~~   77 (329)
T TIGR02822         1 AWEVERPGPIEDGPLRFV-ERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPV--HRPRVTPGHEVVGEVAGRGADAGG   77 (329)
T ss_pred             CeeeecCCcCCCCCceEE-eCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCC--CCCCccCCcceEEEEEEECCCCcc
Confidence            4677777765  458888 89999999999999999999999999999887543  234689999999999999999999


Q ss_pred             CCCCCEEEEecC-----c--cc------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          164 FKEGDEVYGDIN-----E--KA------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       164 ~~~Gd~V~~~~~-----~--~~------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      |++||+|+..+.     .  .|            ..+....|+|+||+.+++..++++|+++++++++.+++.+.|||++
T Consensus        78 ~~~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~  157 (329)
T TIGR02822        78 FAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRA  157 (329)
T ss_pred             cCCCCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHH
Confidence            999999975321     0  00            1122346999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +.++++++|++|||+| +|++|++++|+||.+|++|+
T Consensus       158 ~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi  193 (329)
T TIGR02822       158 LLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVH  193 (329)
T ss_pred             HHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEE
Confidence            9888999999999999 59999999999999999864

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.96  E-value=1.9e-28  Score=225.48  Aligned_cols=172  Identities=25%  Similarity=0.296  Sum_probs=147.5

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||++++...+..  ++++ +++.|++.++||+|||.+++||++|++.+.|..+.  ..+|.++|||++|+|+++|++++.
T Consensus         2 ~~a~~~~~~~~~--l~~~-~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~--~~~p~i~GhE~~G~V~~vG~~v~~   76 (368)
T TIGR02818         2 SRAAVAWAAGQP--LKIE-EVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPE--GVFPVILGHEGAGIVEAVGEGVTS   76 (368)
T ss_pred             ceEEEEecCCCC--eEEE-EecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCC--CCCCeeeccccEEEEEEECCCCcc
Confidence            899998887754  6676 88999999999999999999999999999887543  356899999999999999999999


Q ss_pred             CCCCCEEEEecCccc------cC---------------C------------------CCCCCceeeEEEecCCCeEECCC
Q 024775          164 FKEGDEVYGDINEKA------LE---------------G------------------PKQFGSLAEYTAVEERLLAPKPK  204 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~------~~---------------~------------------~~~~G~~ae~~~v~~~~~~~lP~  204 (262)
                      |++||+|++.....|      ..               +                  ....|+|+||+++++..++++|+
T Consensus        77 ~~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~  156 (368)
T TIGR02818        77 VKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINP  156 (368)
T ss_pred             CCCCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCC
Confidence            999999987532111      00               0                  00137999999999999999999


Q ss_pred             CCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          205 NLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       205 ~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      ++++++++.+++++.|||+++. +.++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus       157 ~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~iG~~a~q~Ak~~G~~~Vi  214 (368)
T TIGR02818       157 AAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFG-LGGIGLSVIQGARMAKASRII  214 (368)
T ss_pred             CCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            9999999999999999999984 58899999999998 69999999999999999 564

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.96  E-value=4.5e-29  Score=218.23  Aligned_cols=173  Identities=24%  Similarity=0.254  Sum_probs=153.9

Q ss_pred             ccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (262)
Q Consensus        81 p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~  160 (262)
                      +-+|||++.++++++  |.++ ++.+++|+.+||+||+.++++|++|.+.+.|..+.  ..||.++|||++|+|+.+|++
T Consensus         5 vI~CKAAV~w~a~~P--L~IE-ei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~--~~fP~IlGHEaaGIVESvGeg   79 (375)
T KOG0022|consen    5 VITCKAAVAWEAGKP--LVIE-EIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPE--GLFPVILGHEAAGIVESVGEG   79 (375)
T ss_pred             ceEEeEeeeccCCCC--eeEE-EEEeCCCCCceEEEEEEEEeeccccceeecCCCcc--ccCceEecccceeEEEEecCC
Confidence            567999999999998  6666 99999999999999999999999999999998754  678999999999999999999


Q ss_pred             CCCCCCCCEEEEecCccc----------------------------------------cCCCCCCCceeeEEEecCCCeE
Q 024775          161 VKEFKEGDEVYGDINEKA----------------------------------------LEGPKQFGSLAEYTAVEERLLA  200 (262)
Q Consensus       161 v~~~~~Gd~V~~~~~~~~----------------------------------------~~~~~~~G~~ae~~~v~~~~~~  200 (262)
                      |+.+++||+|+.++...|                                        ++++....+|+||.++++..++
T Consensus        80 V~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~  159 (375)
T KOG0022|consen   80 VTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVA  159 (375)
T ss_pred             ccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeE
Confidence            999999999987642110                                        1222233589999999999999


Q ss_pred             ECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          201 PKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       201 ~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      ++++..+++.++++.+.+.|+|.|.- .+++++|++|.|+| .|+||++++|-||++||.
T Consensus       160 kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfG-LG~VGLav~~Gaka~GAs  218 (375)
T KOG0022|consen  160 KIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFG-LGGVGLAVAMGAKAAGAS  218 (375)
T ss_pred             ecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEe-cchHHHHHHHhHHhcCcc
Confidence            99999999999999999999999984 68999999999999 999999999999999984

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.96  E-value=3.7e-28  Score=225.70  Aligned_cols=170  Identities=22%  Similarity=0.284  Sum_probs=140.9

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCC-------CCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEE
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVK-------EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVV  155 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~-------~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv  155 (262)
                      -|||+++.++++   ++++ +++.|+++       +|||||||.++|||++|++.+.|..+   ..+|.++|||++|+|+
T Consensus         2 ~mka~v~~~~~~---~~~~-e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~---~~~p~i~GhE~~G~V~   74 (393)
T TIGR02819         2 GNRGVVYLGPGK---VEVQ-DIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT---APTGLVLGHEITGEVI   74 (393)
T ss_pred             CceEEEEecCCc---eeEE-eccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC---CCCCccccceeEEEEE
Confidence            489999988876   6666 88988874       68999999999999999999988643   3468999999999999


Q ss_pred             EeCCCCCCCCCCCEEEEecCccc-------------cC-----------CC----CCCCceeeEEEecCC--CeEECCCC
Q 024775          156 KVGTQVKEFKEGDEVYGDINEKA-------------LE-----------GP----KQFGSLAEYTAVEER--LLAPKPKN  205 (262)
Q Consensus       156 ~vG~~v~~~~~Gd~V~~~~~~~~-------------~~-----------~~----~~~G~~ae~~~v~~~--~~~~lP~~  205 (262)
                      ++|++|++|++||+|+......|             |.           +.    ...|+|+||+++++.  .++++|++
T Consensus        75 ~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~  154 (393)
T TIGR02819        75 EKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDR  154 (393)
T ss_pred             EEcCccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCc
Confidence            99999999999999977432111             00           10    136999999999964  69999988


Q ss_pred             CCH----hhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775          206 LDF----VQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF  260 (262)
Q Consensus       206 ~~~----~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V  260 (262)
                      ++.    .+++.+...+.++|+++.+.++++|++|+|.| +|++|++++|+|+.+|+++
T Consensus       155 ~~~~~~~~~~a~l~~~~~ta~~a~~~~~~~~g~~VlV~G-~G~iG~~aiqlAk~~Ga~~  212 (393)
T TIGR02819       155 DQALEKIRDLTMLSDIFPTGYHGAVTAGVGPGSTVYIAG-AGPVGLAAAASAQLLGAAV  212 (393)
T ss_pred             ccccccccceeeeccHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCce
Confidence            643    34667788899999999888999999999976 8999999999999999974

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.96  E-value=4.2e-28  Score=222.08  Aligned_cols=171  Identities=22%  Similarity=0.292  Sum_probs=147.0

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      +||++++++++.+  ++++ +.+.|.++++||+|||.+++||++|++.+.|..+   ..+|.++|||++|+|+++|++++
T Consensus         1 ~mka~~~~~~~~~--~~~~-~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~---~~~p~i~G~e~~G~V~~vG~~v~   74 (358)
T TIGR03451         1 TVRGVIARSKGAP--VELE-TIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN---DEFPFLLGHEAAGVVEAVGEGVT   74 (358)
T ss_pred             CcEEEEEccCCCC--CEEE-EEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc---ccCCcccccceEEEEEEeCCCCc
Confidence            5999999999875  5666 8899999999999999999999999999988653   34688999999999999999999


Q ss_pred             CCCCCCEEEEecCccc------cC--------------------CC-----CCCCceeeEEEecCCCeEECCCCCCHhhH
Q 024775          163 EFKEGDEVYGDINEKA------LE--------------------GP-----KQFGSLAEYTAVEERLLAPKPKNLDFVQA  211 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~------~~--------------------~~-----~~~G~~ae~~~v~~~~~~~lP~~~~~~~a  211 (262)
                      +|++||+|++.....|      ..                    +.     ...|+|+||+.+++..++++|++++++++
T Consensus        75 ~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~a  154 (358)
T TIGR03451        75 DVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAA  154 (358)
T ss_pred             ccCCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHh
Confidence            9999999987432110      00                    00     12589999999999999999999999999


Q ss_pred             hcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc-c
Q 024775          212 AGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF-F  260 (262)
Q Consensus       212 a~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V  260 (262)
                      +.+++.+.++|+++. ...+++|++|||+| +|++|++++|+||.+|++ |
T Consensus       155 a~l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~~~ak~~G~~~V  204 (358)
T TIGR03451       155 GLLGCGVMAGLGAAVNTGGVKRGDSVAVIG-CGGVGDAAIAGAALAGASKI  204 (358)
T ss_pred             hhhcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeE
Confidence            999988999998875 57899999999998 799999999999999985 5

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.96  E-value=4.5e-28  Score=222.49  Aligned_cols=176  Identities=24%  Similarity=0.366  Sum_probs=145.1

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      -|+++++|.+.+...  .+++. +.+.|.++++||+|||.+++||++|++.+.|.++.  ..+|.++|||++|+|+++|+
T Consensus         9 ~~~~~~~~~~~~~~~--~l~~~-~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~--~~~p~i~GhE~~G~V~~vG~   83 (360)
T PLN02586          9 HPQKAFGWAARDPSG--VLSPF-HFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGF--TRYPIVPGHEIVGIVTKLGK   83 (360)
T ss_pred             chhheeEEEecCCCC--CceEE-eecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCC--CCCCccCCcceeEEEEEECC
Confidence            355666666655543  36666 78888999999999999999999999998876542  35689999999999999999


Q ss_pred             CCCCCCCCCEEEEecC----ccc----------cC------------CCCCCCceeeEEEecCCCeEECCCCCCHhhHhc
Q 024775          160 QVKEFKEGDEVYGDIN----EKA----------LE------------GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAG  213 (262)
Q Consensus       160 ~v~~~~~Gd~V~~~~~----~~~----------~~------------~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~  213 (262)
                      +|++|++||+|+....    ..|          +.            +....|+|+||+++++..++++|+++++++++.
T Consensus        84 ~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~  163 (360)
T PLN02586         84 NVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAP  163 (360)
T ss_pred             CCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhh
Confidence            9999999999974211    000          00            122368999999999999999999999999999


Q ss_pred             ccchHHHHHHHHHH-cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          214 LPLAIETAYEGLER-TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       214 l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +.+...|+|+++.+ ..+++|++|+|.| +|++|++++|+||.+|++|+
T Consensus       164 l~~~~~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~vi  211 (360)
T PLN02586        164 LLCAGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVT  211 (360)
T ss_pred             hhcchHHHHHHHHHhcccCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            99999999999975 4578999999987 79999999999999999864

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.96  E-value=6e-28  Score=221.80  Aligned_cols=173  Identities=21%  Similarity=0.216  Sum_probs=147.9

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      +|||+++.+.+..  ++++ +.++|+++++||+|||.+++||++|++.++|..+.  ..+|.++|||++|+|+++|++++
T Consensus         2 ~~ka~~~~~~~~~--~~l~-~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~   76 (369)
T cd08301           2 TCKAAVAWEAGKP--LVIE-EVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQT--PLFPRILGHEAAGIVESVGEGVT   76 (369)
T ss_pred             ccEEEEEecCCCC--cEEE-EeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCC--CCCCcccccccceEEEEeCCCCC
Confidence            6999999887654  6676 88999999999999999999999999999886542  45689999999999999999999


Q ss_pred             CCCCCCEEEEecCcccc------CC----------------------------------CCCCCceeeEEEecCCCeEEC
Q 024775          163 EFKEGDEVYGDINEKAL------EG----------------------------------PKQFGSLAEYTAVEERLLAPK  202 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~------~~----------------------------------~~~~G~~ae~~~v~~~~~~~l  202 (262)
                      +|++||+|++.....|.      .+                                  ....|+|+||+++++..++++
T Consensus        77 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  156 (369)
T cd08301          77 DLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKI  156 (369)
T ss_pred             ccccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEEC
Confidence            99999999975321110      00                                  002478999999999999999


Q ss_pred             CCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          203 PKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       203 P~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      |+++++++++.+++.+.|+|+++. ..++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus       157 P~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~q~ak~~G~~~vi  216 (369)
T cd08301         157 NPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFG-LGAVGLAVAEGARIRGASRII  216 (369)
T ss_pred             CCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            999999999999999999999875 58899999999998 69999999999999998 553

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.96  E-value=7.8e-28  Score=216.36  Aligned_cols=168  Identities=17%  Similarity=0.211  Sum_probs=137.8

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecC-hhhHHhHcCCCCCCC-CCCCCCCCccEEEEEEEeCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALN-PVDGKRRQGKFKATD-SPLPTVPGYDVAGVVVKVGTQ  160 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~-~sD~~~~~g~~~~~~-~~~p~~~G~e~vG~Vv~vG~~  160 (262)
                      +||++++.+++.   ++++ +.+.|++++|||+|||.+++|| ++|++.++|..+..+ ..+|.++|||++|+|+++|++
T Consensus         1 ~~ka~~~~~~~~---l~~~-e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~   76 (308)
T TIGR01202         1 KTQAIVLSGPNQ---IELR-EVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPD   76 (308)
T ss_pred             CceEEEEeCCCe---EEEE-EecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCC
Confidence            489999987654   7777 8999999999999999999996 799998888764322 357899999999999999999


Q ss_pred             CCCCCCCCEEEEecCccccCC-CCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEE
Q 024775          161 VKEFKEGDEVYGDINEKALEG-PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL  239 (262)
Q Consensus       161 v~~~~~Gd~V~~~~~~~~~~~-~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~  239 (262)
                      + .|++||+|+..+. .|... ....|+|+||++++++.++++|++++++. +.+ ....|||+++++.. .+|++|+|+
T Consensus        77 v-~~~vGdrV~~~~~-~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~-~~~~~a~~~~~~~~-~~~~~vlV~  151 (308)
T TIGR01202        77 T-GFRPGDRVFVPGS-NCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALL-ALAATARHAVAGAE-VKVLPDLIV  151 (308)
T ss_pred             C-CCCCCCEEEEeCc-cccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhh-hHHHHHHHHHHhcc-cCCCcEEEE
Confidence            8 6999999987432 22111 12369999999999999999999998764 444 34679999997653 368999999


Q ss_pred             cCchHHHHHHHHHHHHcCCcc
Q 024775          240 NGSGGVGSLVIQVCYYYLEFF  260 (262)
Q Consensus       240 Ga~G~vG~~aiqlAk~~Ga~V  260 (262)
                      | +|++|++++|+||.+|+++
T Consensus       152 G-~G~vG~~a~q~ak~~G~~~  171 (308)
T TIGR01202       152 G-HGTLGRLLARLTKAAGGSP  171 (308)
T ss_pred             C-CCHHHHHHHHHHHHcCCce
Confidence            8 8999999999999999974

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.96  E-value=1.4e-27  Score=219.54  Aligned_cols=173  Identities=25%  Similarity=0.256  Sum_probs=147.0

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      +||++++...+..  ++++ +.+.|.++++||+|||.+++||++|++.+.|..+.  ..+|.++|||++|+|+++|++++
T Consensus         2 ~~~a~~~~~~~~~--~~~~-~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~--~~~p~v~G~E~~G~V~~vG~~v~   76 (368)
T cd08300           2 TCKAAVAWEAGKP--LSIE-EVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPE--GLFPVILGHEGAGIVESVGEGVT   76 (368)
T ss_pred             cceEEEEecCCCC--cEEE-EeecCCCCCCEEEEEEEEEEechhhHHHhcCCCcc--CCCCceeccceeEEEEEeCCCCc
Confidence            5899998877654  6666 88999999999999999999999999999887653  35789999999999999999999


Q ss_pred             CCCCCCEEEEecCccc------cC---------------------------------CCCCCCceeeEEEecCCCeEECC
Q 024775          163 EFKEGDEVYGDINEKA------LE---------------------------------GPKQFGSLAEYTAVEERLLAPKP  203 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~------~~---------------------------------~~~~~G~~ae~~~v~~~~~~~lP  203 (262)
                      +|++||+|++.....|      ..                                 +....|+|+||+++++..++++|
T Consensus        77 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  156 (368)
T cd08300          77 SVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKIN  156 (368)
T ss_pred             cCCCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCC
Confidence            9999999987532110      00                                 00024689999999999999999


Q ss_pred             CCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          204 KNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       204 ~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      +++++++++.+.+++.|||+++. ..++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus       157 ~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~vG~~a~~~ak~~G~~~vi  215 (368)
T cd08300         157 PEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFG-LGAVGLAVIQGAKAAGASRII  215 (368)
T ss_pred             CCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            99999999999999999999974 58899999999998 79999999999999999 453

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.95  E-value=2.4e-27  Score=212.58  Aligned_cols=167  Identities=26%  Similarity=0.312  Sum_probs=150.7

Q ss_pred             eeEEEEcccCCc-ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~-~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ||++++.+++++ +.++++ +.+.|.+.++||+|||.++++|+.|++.+.|.++.. ..+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~-~~~p~~~G~e~~G~V~~~G~~v~   78 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIG-EVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYK-PELPAIGGSEAVGVVDAVGEGVK   78 (324)
T ss_pred             CeeEEEccCCChhHeEEEe-ecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCC-CCCCCCCCcceEEEEEEeCCCCC
Confidence            799999888765 457888 889999999999999999999999999988866432 34578999999999999999999


Q ss_pred             CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCc
Q 024775          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGS  242 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~  242 (262)
                      ++++||+|+++..         .|+|++|+.+++..++++|+++++++++.++..+.++|++++..++++|++|+|+|++
T Consensus        79 ~~~~Gd~V~~~~~---------~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~~~~~~g~~vlI~g~~  149 (324)
T cd08292          79 GLQVGQRVAVAPV---------HGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDFLGVKPGQWLIQNAAG  149 (324)
T ss_pred             CCCCCCEEEeccC---------CCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHHHhhCCCCCCEEEEcccc
Confidence            9999999998642         5899999999999999999999999999998889999999988899999999999999


Q ss_pred             hHHHHHHHHHHHHcCCccC
Q 024775          243 GGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       243 G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |.+|++++|+|+.+|++++
T Consensus       150 g~ig~~~~~~a~~~G~~v~  168 (324)
T cd08292         150 GAVGKLVAMLAAARGINVI  168 (324)
T ss_pred             cHHHHHHHHHHHHCCCeEE
Confidence            9999999999999999875

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.95  E-value=2.4e-27  Score=215.88  Aligned_cols=168  Identities=19%  Similarity=0.250  Sum_probs=137.7

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHc-CCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQ-GKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~-g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      .||+.++..+++   ++++ +.+.| +.++||||||.++|||++|++.+. |..+....++|.++|||++|+|+++  ++
T Consensus         4 ~~~~~~~~~~~~---~~~~-~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v   76 (343)
T PRK09880          4 KTQSCVVAGKKD---VAVT-EQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DS   76 (343)
T ss_pred             cceEEEEecCCc---eEEE-ecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cC
Confidence            478999988877   6666 77877 689999999999999999999875 4332222457899999999999999  78


Q ss_pred             CCCCCCCEEEEecCcccc------------------CC-----CCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchH
Q 024775          162 KEFKEGDEVYGDINEKAL------------------EG-----PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAI  218 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~~------------------~~-----~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~  218 (262)
                      ++|++||+|+......|.                  .+     ....|+|+||++++++.++++|+++++++++ +...+
T Consensus        77 ~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa-~~~~~  155 (343)
T PRK09880         77 SGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMA-FAEPL  155 (343)
T ss_pred             ccCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHH-hhcHH
Confidence            899999999875322110                  01     1236999999999999999999999987655 45677


Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          219 ETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       219 ~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      .+||+++++....+|++|+|+| +|++|++++|+||.+|++
T Consensus       156 ~~a~~al~~~~~~~g~~VlV~G-~G~vG~~aiqlak~~G~~  195 (343)
T PRK09880        156 AVAIHAAHQAGDLQGKRVFVSG-VGPIGCLIVAAVKTLGAA  195 (343)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCc
Confidence            8999999888888999999998 699999999999999984

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.95  E-value=3.1e-27  Score=215.99  Aligned_cols=171  Identities=19%  Similarity=0.216  Sum_probs=135.4

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCC-CCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATD-SPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~-~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ||+++++..+ .+ ++++ +.+.|+++++||||||++++||++|++.++|..+..+ ..+|.++|||++|+|+++|++ +
T Consensus         1 mka~~~~~~~-~~-l~~~-~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~   76 (355)
T cd08230           1 MKAIAVKPGK-PG-VRVV-DIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-S   76 (355)
T ss_pred             CceeEecCCC-CC-CeEE-eCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-C
Confidence            7899997533 33 7777 8999999999999999999999999999998754322 245789999999999999999 9


Q ss_pred             CCCCCCEEEEecCccc------cC--------------CC-CCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHH
Q 024775          163 EFKEGDEVYGDINEKA------LE--------------GP-KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA  221 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~------~~--------------~~-~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA  221 (262)
                      .|++||+|+......|      ..              +. ...|+|+||++++++.++++|++++  +.+.+..++.++
T Consensus        77 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~--~~a~~~~p~~~~  154 (355)
T cd08230          77 GLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA--DVGVLLEPLSVV  154 (355)
T ss_pred             CCCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC--cceeecchHHHH
Confidence            9999999987543211      00              11 1358999999999999999999998  344444555555


Q ss_pred             HHHHHH-------cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          222 YEGLER-------TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       222 ~~al~~-------~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +.++..       ..+++|++|+|+| +|++|++++|+||.+|++|+
T Consensus       155 ~~a~~~~~~~~~~~~~~~g~~vlI~G-~G~vG~~a~q~ak~~G~~vi  200 (355)
T cd08230         155 EKAIEQAEAVQKRLPTWNPRRALVLG-AGPIGLLAALLLRLRGFEVY  200 (355)
T ss_pred             HHHHHHHhhhhhhcccCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence            555422       2367999999998 69999999999999999764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.95  E-value=3.5e-27  Score=214.96  Aligned_cols=168  Identities=19%  Similarity=0.182  Sum_probs=135.3

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCC--CCCCCCCCCccEEEEEEEeCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT--DSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~--~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      .|++++.++++   ++++ +.+.|+ ++|||+|||+++|||++|++.++|.....  ...+|.++|||++|+|+++|.+ 
T Consensus         3 ~~~~~~~~~~~---~~~~-~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~-   76 (341)
T cd08237           3 NQVYRLVRPKF---FEVT-YEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG-   76 (341)
T ss_pred             ccceEEeccce---EEEe-ecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC-
Confidence            57888887775   6776 888885 99999999999999999999999865321  1357899999999999998864 


Q ss_pred             CCCCCCCEEEEecCccc---------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH
Q 024775          162 KEFKEGDEVYGDINEKA---------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE  226 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~---------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~  226 (262)
                       .|++||+|+......|               +.+....|+|+||+++|++.++++|+++++++++ +...+.++|+++.
T Consensus        77 -~~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa-~~~~~~~a~~a~~  154 (341)
T cd08237          77 -TYKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAA-FTELVSVGVHAIS  154 (341)
T ss_pred             -ccCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhh-hhchHHHHHHHHH
Confidence             7999999987532211               0111235899999999999999999999998876 4457788999985


Q ss_pred             H---cCCCCCCEEEEEcCchHHHHHHHHHHHH-cCC-cc
Q 024775          227 R---TGFSAGKSILVLNGSGGVGSLVIQVCYY-YLE-FF  260 (262)
Q Consensus       227 ~---~~~~~g~~VlI~Ga~G~vG~~aiqlAk~-~Ga-~V  260 (262)
                      +   +.+++|++|+|.| +|++|++++|+|+. +|+ +|
T Consensus       155 ~~~~~~~~~g~~VlV~G-~G~vGl~~~~~a~~~~g~~~v  192 (341)
T cd08237         155 RFEQIAHKDRNVIGVWG-DGNLGYITALLLKQIYPESKL  192 (341)
T ss_pred             HHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhcCCCcE
Confidence            3   4578999999999 79999999999986 553 44

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.95  E-value=6.8e-27  Score=215.95  Aligned_cols=175  Identities=23%  Similarity=0.329  Sum_probs=143.6

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      .+||+.+...+....+++. +.+.|.++++||+|||.+++||++|++.+.|.++.  ..+|.++|||++|+|+++|++++
T Consensus         4 ~~~a~~~~~~~~~~~l~~~-~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~--~~~p~i~GhE~aG~Vv~vG~~v~   80 (375)
T PLN02178          4 QNKAFGWAANDESGVLSPF-HFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGF--SRYPIIPGHEIVGIATKVGKNVT   80 (375)
T ss_pred             cceeEEEEEccCCCCceEE-eecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCC--CCCCcccCceeeEEEEEECCCCC
Confidence            3556666555554456666 77888999999999999999999999999886532  34678999999999999999999


Q ss_pred             CCCCCCEEEEe-----cCc--cc-------c------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccc
Q 024775          163 EFKEGDEVYGD-----INE--KA-------L------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL  216 (262)
Q Consensus       163 ~~~~Gd~V~~~-----~~~--~~-------~------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~  216 (262)
                      +|++||+|+..     |..  .|       +            .+....|+|+||++++++.++++|+++++++++.+.+
T Consensus        81 ~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~  160 (375)
T PLN02178         81 KFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLC  160 (375)
T ss_pred             ccCCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhc
Confidence            99999999753     210  00       0            0112368999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHcC--CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          217 AIETAYEGLERTG--FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       217 ~~~tA~~al~~~~--~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ...|+|+++....  .++|++|+|.| +|++|++++|+||.+|++|+
T Consensus       161 ~~~ta~~al~~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~Vi  206 (375)
T PLN02178        161 AGITVYSPMKYYGMTKESGKRLGVNG-LGGLGHIAVKIGKAFGLRVT  206 (375)
T ss_pred             cchHHHHHHHHhCCCCCCCCEEEEEc-ccHHHHHHHHHHHHcCCeEE
Confidence            9999999997654  46899999998 69999999999999999864

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.95  E-value=7.7e-27  Score=213.95  Aligned_cols=175  Identities=26%  Similarity=0.324  Sum_probs=148.1

Q ss_pred             ccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (262)
Q Consensus        81 p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~  160 (262)
                      -+.+++|++.++++.  ++++ +++.|+++++||+|||.+++||++|++.+.|.++.  ..+|.++|||++|+|+++|++
T Consensus         7 ~~~~~~~~~~~~~~~--~~~~-~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~--~~~p~i~G~E~~G~Vv~vG~~   81 (357)
T PLN02514          7 EKKTTGWAARDPSGH--LSPY-TYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM--SNYPMVPGHEVVGEVVEVGSD   81 (357)
T ss_pred             CceEEEEEEecCCCC--ceEE-eecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCc--CCCCccCCceeeEEEEEECCC
Confidence            345899999999865  6666 88999999999999999999999999998886532  346789999999999999999


Q ss_pred             CCCCCCCCEEEEe-----cCc--ccc-------------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcc
Q 024775          161 VKEFKEGDEVYGD-----INE--KAL-------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL  214 (262)
Q Consensus       161 v~~~~~Gd~V~~~-----~~~--~~~-------------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l  214 (262)
                      +++|++||+|+..     |..  .|.                   .+....|+|+||++++...++++|+++++++++.+
T Consensus        82 v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l  161 (357)
T PLN02514         82 VSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPL  161 (357)
T ss_pred             cccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhh
Confidence            9999999999752     110  000                   01123689999999999999999999999999999


Q ss_pred             cchHHHHHHHHHHc-CCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          215 PLAIETAYEGLERT-GFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       215 ~~~~~tA~~al~~~-~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++.+.|||+++.+. ..++|++|+|+| +|++|++++|+||.+|++|+
T Consensus       162 ~~~~~ta~~al~~~~~~~~g~~vlV~G-~G~vG~~av~~Ak~~G~~vi  208 (357)
T PLN02514        162 LCAGVTVYSPLSHFGLKQSGLRGGILG-LGGVGHMGVKIAKAMGHHVT  208 (357)
T ss_pred             hhhHHHHHHHHHHcccCCCCCeEEEEc-ccHHHHHHHHHHHHCCCeEE
Confidence            99999999999764 457999999996 79999999999999999764

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.95  E-value=8.8e-27  Score=214.00  Aligned_cols=172  Identities=23%  Similarity=0.262  Sum_probs=146.9

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      .||++++.+.++.  ++++ +.+.|.++++||+|||.++++|++|++.+.|..+   ..+|.++|||++|+|+++|++++
T Consensus         2 ~~ka~~~~~~~~~--~~~~-~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~---~~~p~i~G~e~~G~V~~vG~~v~   75 (365)
T cd08277           2 KCKAAVAWEAGKP--LVIE-EIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA---TLFPVILGHEGAGIVESVGEGVT   75 (365)
T ss_pred             ccEEEEEccCCCC--cEEE-EEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC---CCCCeecccceeEEEEeeCCCCc
Confidence            4899999887654  6666 8899999999999999999999999999988654   35678999999999999999999


Q ss_pred             CCCCCCEEEEecCccc------cCC--------------------------------CCCCCceeeEEEecCCCeEECCC
Q 024775          163 EFKEGDEVYGDINEKA------LEG--------------------------------PKQFGSLAEYTAVEERLLAPKPK  204 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~------~~~--------------------------------~~~~G~~ae~~~v~~~~~~~lP~  204 (262)
                      .+++||+|++.....|      ..+                                ....|+|+||+.++.+.++++|+
T Consensus        76 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~  155 (365)
T cd08277          76 NLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDP  155 (365)
T ss_pred             cCCCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCC
Confidence            9999999987532111      000                                01248999999999999999999


Q ss_pred             CCCHhhHhcccchHHHHHHHH-HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          205 NLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       205 ~~~~~~aa~l~~~~~tA~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      ++++++++.+.+++.|||+++ +..++++|++|+|+| +|++|++++|+||.+|+ +|+
T Consensus       156 ~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~Vi  213 (365)
T cd08277         156 AAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFG-LGAVGLSAIMGAKIAGASRII  213 (365)
T ss_pred             CCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            999999999999999999987 468899999999997 79999999999999998 453

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.95  E-value=6.5e-27  Score=211.00  Aligned_cols=167  Identities=29%  Similarity=0.394  Sum_probs=144.0

Q ss_pred             eeEEEEcccCCc---ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775           84 MKAWLYGEYGGV---DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (262)
Q Consensus        84 ~ka~v~~~~g~~---~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~  160 (262)
                      ||++++.+++.+   +.+++. +.+.|.++++||+||+.++++|++|++.+.|.++.. ..+|.++|||++|+|+++|++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~-~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~-~~~p~v~G~e~~G~V~~vG~~   78 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLP-EPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGST-KALPVPPGFEGSGTVVAAGGG   78 (324)
T ss_pred             CeEEEEeecCCCccccEEEec-ccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCC-CCCCcCCCcceEEEEEEECCC
Confidence            799999998865   567777 889999999999999999999999999998865432 356889999999999999999


Q ss_pred             CCC-CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEE
Q 024775          161 VKE-FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL  239 (262)
Q Consensus       161 v~~-~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~  239 (262)
                      +.+ |++||+|++...        ..|+|+||++++++.++++|+++++++++.+++...|||..+..... .++.++|+
T Consensus        79 v~~~~~vGd~V~~~~~--------~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~-~~~~vlv~  149 (324)
T cd08291          79 PLAQSLIGKRVAFLAG--------SYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGMLETARE-EGAKAVVH  149 (324)
T ss_pred             ccccCCCCCEEEecCC--------CCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHHHhhcc-CCCcEEEE
Confidence            986 999999998642        14899999999999999999999999999888888899866655555 55566665


Q ss_pred             -cCchHHHHHHHHHHHHcCCccC
Q 024775          240 -NGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       240 -Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                       |++|++|++++|+||.+|++|+
T Consensus       150 ~~g~g~vG~~a~q~a~~~G~~vi  172 (324)
T cd08291         150 TAAASALGRMLVRLCKADGIKVI  172 (324)
T ss_pred             ccCccHHHHHHHHHHHHcCCEEE
Confidence             7899999999999999999875

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PLN02827 Alcohol dehydrogenase-like

Probab=99.95  E-value=8.6e-27  Score=215.37  Aligned_cols=168  Identities=22%  Similarity=0.242  Sum_probs=143.2

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      .||++++.++++  .++++ +.+.|.++++||+|||.++|||++|++.+.+..     .+|.++|||++|+|+++|++++
T Consensus        12 ~mka~~~~~~~~--~~~~~-e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~-----~~p~i~GhE~~G~V~~vG~~v~   83 (378)
T PLN02827         12 TCRAAVAWGAGE--ALVME-EVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA-----LFPRIFGHEASGIVESIGEGVT   83 (378)
T ss_pred             eeEEEEEecCCC--CceEE-EeecCCCCCCEEEEEEEEEecChhHHHHhcCCC-----CCCeeecccceEEEEEcCCCCc
Confidence            499999987664  36677 899999999999999999999999999887642     3578999999999999999999


Q ss_pred             CCCCCCEEEEecCcccc-------------C---------------------C-----CCCCCceeeEEEecCCCeEECC
Q 024775          163 EFKEGDEVYGDINEKAL-------------E---------------------G-----PKQFGSLAEYTAVEERLLAPKP  203 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~-------------~---------------------~-----~~~~G~~ae~~~v~~~~~~~lP  203 (262)
                      +|++||+|++.....|.             .                     +     ....|+|+||+.+++..++++|
T Consensus        84 ~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP  163 (378)
T PLN02827         84 EFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVD  163 (378)
T ss_pred             ccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECC
Confidence            99999999986431110             0                     0     0024899999999999999999


Q ss_pred             CCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          204 KNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       204 ~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      +++++++++.+.+++.++|+++. ..++++|++|||+| +|++|++++|+||.+|++
T Consensus       164 ~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G-~G~vG~~~iqlak~~G~~  219 (378)
T PLN02827        164 PLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFG-LGTVGLSVAQGAKLRGAS  219 (378)
T ss_pred             CCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence            99999999988888889998774 57899999999998 699999999999999985

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=99.95  E-value=1.7e-26  Score=208.42  Aligned_cols=168  Identities=38%  Similarity=0.527  Sum_probs=148.7

Q ss_pred             eEEEEccc---CCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775           85 KAWLYGEY---GGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        85 ka~v~~~~---g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      |||++.++   +.++.+++. +.+.|+++++||+|||.++++|+.|...+.+..+.  ..+|.++|+|++|+|+++|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~vG~~v   77 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDI-DLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE--AGQPKILGWDAAGVVVAVGDEV   77 (336)
T ss_pred             CceeeccccCCCCcccceec-ccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCC--CCCCcccceeeEEEEEEeCCCC
Confidence            68999997   777788888 88999999999999999999999999988776432  3457899999999999999999


Q ss_pred             CCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCC-----CCE
Q 024775          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSA-----GKS  235 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~-----g~~  235 (262)
                      +.|++||+|+++..      ....|+|++|++++++.++++|+++++++++.+++++.|||+++. ..++++     |++
T Consensus        78 ~~~~~Gd~V~~~~~------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~  151 (336)
T TIGR02817        78 TLFKPGDEVWYAGD------IDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRA  151 (336)
T ss_pred             CCCCCCCEEEEcCC------CCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCE
Confidence            99999999997541      112589999999999999999999999999999999999999994 577776     999


Q ss_pred             EEEEcCchHHHHHHHHHHHHc-CCccC
Q 024775          236 ILVLNGSGGVGSLVIQVCYYY-LEFFF  261 (262)
Q Consensus       236 VlI~Ga~G~vG~~aiqlAk~~-Ga~V~  261 (262)
                      |+|+|++|++|++++|+||.+ |++|+
T Consensus       152 vlV~ga~g~vg~~~~~~ak~~~G~~vi  178 (336)
T TIGR02817       152 LLIIGGAGGVGSILIQLARQLTGLTVI  178 (336)
T ss_pred             EEEEcCCcHHHHHHHHHHHHhCCCEEE
Confidence            999999999999999999998 98875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.94  E-value=4.7e-26  Score=206.69  Aligned_cols=178  Identities=34%  Similarity=0.475  Sum_probs=150.5

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC------------------CCCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA------------------TDSPLPTV  145 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~------------------~~~~~p~~  145 (262)
                      ||++++..++.++.+.+.+..+.|.+.++||+|||.++++|++|++.+.|.++.                  ....+|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            789999887766567676445777889999999999999999999988775431                  12446789


Q ss_pred             CCccEEEEEEEeCCCCCCCCCCCEEEEecCcccc----------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhccc
Q 024775          146 PGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKAL----------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLP  215 (262)
Q Consensus       146 ~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~----------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~  215 (262)
                      +|||++|+|+++|+++++|++||+|++.....+.          .+....|++++|+.++...++++|+++++++++.++
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~  160 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATFP  160 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhcc
Confidence            9999999999999999999999999985322111          111225899999999999999999999999999999


Q ss_pred             chHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          216 LAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       216 ~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +.+.|||++++..++++|++|+|+|++|++|++++++|+.+|++++
T Consensus       161 ~~~~ta~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi  206 (350)
T cd08274         161 CSYSTAENMLERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVI  206 (350)
T ss_pred             cHHHHHHHHHhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEE
Confidence            9999999999778999999999999889999999999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.94  E-value=1.6e-25  Score=202.72  Aligned_cols=172  Identities=31%  Similarity=0.372  Sum_probs=147.5

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||+++++++..  ++++ +.+.|++.++||+||+.++++|++|+..+.|..+.  ..+|.++|||++|+|+++|+++.+
T Consensus         1 m~a~~~~~~~~~--~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~p~~~g~e~~G~v~~vG~~v~~   75 (333)
T cd08296           1 YKAVQVTEPGGP--LELV-ERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPG--LSYPRVPGHEVVGRIDAVGEGVSR   75 (333)
T ss_pred             CeEEEEccCCCC--ceEE-eccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCC--CCCCcccCcceeEEEEEECCCCcc
Confidence            799999988533  6676 88999999999999999999999999998886543  345789999999999999999999


Q ss_pred             CCCCCEEEEecC----ccc---------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          164 FKEGDEVYGDIN----EKA---------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       164 ~~~Gd~V~~~~~----~~~---------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      +++||+|++...    ..|               ..+....|++++|+.++...++++|+++++++++.+++.+.++|++
T Consensus        76 ~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~  155 (333)
T cd08296          76 WKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNA  155 (333)
T ss_pred             CCCCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHH
Confidence            999999986310    000               0112235899999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++..++++|++|+|+| +|++|++++|+||.+|++|+
T Consensus       156 ~~~~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi  191 (333)
T cd08296         156 LRNSGAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTV  191 (333)
T ss_pred             HHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEE
Confidence            9878999999999999 89999999999999999864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=99.94  E-value=1.8e-25  Score=200.80  Aligned_cols=168  Identities=36%  Similarity=0.531  Sum_probs=150.2

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      +|||+++.+++....++++ +.+.|.+.++||+|||.++++|+.|.....|.++. ...+|.++|+|++|+|+++|+++.
T Consensus         1 ~m~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~   78 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIG-ESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP-PPGSSEILGLEVAGYVEDVGSDVK   78 (334)
T ss_pred             CcEEEEEEecCCCcceEEE-eCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCcccceeeEEEEEEeCCCCC
Confidence            5999999998887667777 67778899999999999999999999988876542 234467899999999999999999


Q ss_pred             CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcC
Q 024775          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNG  241 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga  241 (262)
                      .+++||+|+++..         .|+|++|+.++.+.++++|+++++.+++.++..+.+||+++.. ..+++|++|+|+|+
T Consensus        79 ~~~~Gd~V~~~~~---------~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga  149 (334)
T PTZ00354         79 RFKEGDRVMALLP---------GGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAG  149 (334)
T ss_pred             CCCCCCEEEEecC---------CCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            9999999998752         5899999999999999999999999999999999999999965 78999999999999


Q ss_pred             chHHHHHHHHHHHHcCCccC
Q 024775          242 SGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       242 ~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +|++|++++++|+.+|++++
T Consensus       150 ~g~~g~~~~~~a~~~g~~v~  169 (334)
T PTZ00354        150 ASGVGTAAAQLAEKYGAATI  169 (334)
T ss_pred             CchHHHHHHHHHHHcCCEEE
Confidence            99999999999999999754

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.94  E-value=1.3e-25  Score=209.54  Aligned_cols=172  Identities=23%  Similarity=0.343  Sum_probs=135.6

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhH-cCCCCC----CCCCCCCCCCccEEEEEEEe
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRR-QGKFKA----TDSPLPTVPGYDVAGVVVKV  157 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~-~g~~~~----~~~~~p~~~G~e~vG~Vv~v  157 (262)
                      +||++++.++++   ++++ +.+.|.+.++||+|||.++|||++|++.+ .|....    ...++|.++|||++|+|+++
T Consensus         2 ~~~a~~~~~~~~---l~~~-e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~v   77 (410)
T cd08238           2 KTKAWRMYGKGD---LRLE-KFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKV   77 (410)
T ss_pred             CcEEEEEEcCCc---eEEE-ecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEe
Confidence            589999988775   7777 89999999999999999999999999976 454211    11246889999999999999


Q ss_pred             CCCCC-CCCCCCEEEEecCcccc-------CCCCCCCceeeEEEecCC----CeEECCCCCCHhhHhcc-cch-HHHHHH
Q 024775          158 GTQVK-EFKEGDEVYGDINEKAL-------EGPKQFGSLAEYTAVEER----LLAPKPKNLDFVQAAGL-PLA-IETAYE  223 (262)
Q Consensus       158 G~~v~-~~~~Gd~V~~~~~~~~~-------~~~~~~G~~ae~~~v~~~----~~~~lP~~~~~~~aa~l-~~~-~~tA~~  223 (262)
                      |++|+ .|++||+|++.....|.       .+....|+|+||++++++    .++++|+++++++++.+ +.. ..++|.
T Consensus        78 G~~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~~~  157 (410)
T cd08238          78 GKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAYT  157 (410)
T ss_pred             CCCccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHHhh
Confidence            99998 69999999886432211       112246999999999986    68999999999988855 322 123443


Q ss_pred             HH---------HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775          224 GL---------ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE  258 (262)
Q Consensus       224 al---------~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga  258 (262)
                      ++         ++.++++|++|+|+|++|++|++++|+||.+|+
T Consensus       158 a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~  201 (410)
T cd08238         158 ANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPI  201 (410)
T ss_pred             hcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhccc
Confidence            32         346789999999999899999999999999864

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.94  E-value=9.6e-26  Score=205.83  Aligned_cols=169  Identities=20%  Similarity=0.337  Sum_probs=140.8

Q ss_pred             EEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCC
Q 024775           87 WLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKE  166 (262)
Q Consensus        87 ~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~  166 (262)
                      |+++++++.  ++++ +.+.|.++++||+|||.++++|++|++.+.+.... ...+|.++|||++|+|+++|+++..+ +
T Consensus         2 ~~~~~~g~~--~~~~-~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~-~~~~p~i~GhE~~G~V~~vG~~v~~~-~   76 (349)
T TIGR03201         2 WMMTEPGKP--MVKT-RVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRT-NHALPLALGHEISGRVIQAGAGAASW-I   76 (349)
T ss_pred             ceEecCCCC--ceEE-eccCCCCCCCeEEEEEEEEeecccchHHHcCCCCc-cCCCCeeccccceEEEEEeCCCcCCC-C
Confidence            566677763  5666 88999999999999999999999999887443221 13567899999999999999999877 9


Q ss_pred             CCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCC------CCCHhhHhcccchHHHHH
Q 024775          167 GDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPK------NLDFVQAAGLPLAIETAY  222 (262)
Q Consensus       167 Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~------~~~~~~aa~l~~~~~tA~  222 (262)
                      ||+|+......|                  +.+....|+|+||+.++.+.++++|+      ++++++++.+++.+.++|
T Consensus        77 GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~  156 (349)
T TIGR03201        77 GKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPY  156 (349)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHH
Confidence            999987432111                  11222369999999999999999999      889999998999999999


Q ss_pred             HHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +++.+..+++|++|+|+|+ |++|++++|+|+.+|++|+
T Consensus       157 ~a~~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi  194 (349)
T TIGR03201       157 QAAVQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVV  194 (349)
T ss_pred             HHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEE
Confidence            9998888999999999996 9999999999999999764

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.94  E-value=1.4e-25  Score=204.48  Aligned_cols=172  Identities=30%  Similarity=0.351  Sum_probs=142.2

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC---------CCCCCCCCCCccEEEEE
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA---------TDSPLPTVPGYDVAGVV  154 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~---------~~~~~p~~~G~e~vG~V  154 (262)
                      ||||++.++++   ++++ +++.|++.++||+||+.++++|++|++.+.+....         ....+|.++|||++|+|
T Consensus         1 mka~~~~~~~~---l~~~-~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V   76 (351)
T cd08233           1 MKAARYHGRKD---IRVE-EVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVV   76 (351)
T ss_pred             CceEEEecCCc---eEEE-eccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEE
Confidence            79999988664   7777 88999999999999999999999999876542110         01236789999999999


Q ss_pred             EEeCCCCCCCCCCCEEEEecCcccc------------------CCCC-CCCceeeEEEecCCCeEECCCCCCHhhHhccc
Q 024775          155 VKVGTQVKEFKEGDEVYGDINEKAL------------------EGPK-QFGSLAEYTAVEERLLAPKPKNLDFVQAAGLP  215 (262)
Q Consensus       155 v~vG~~v~~~~~Gd~V~~~~~~~~~------------------~~~~-~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~  215 (262)
                      +++|+++++|++||+|++.....|.                  .+.. ..|+|++|+.++...++++|+++++++++.+ 
T Consensus        77 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-  155 (351)
T cd08233          77 VEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV-  155 (351)
T ss_pred             EEeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-
Confidence            9999999999999999975322110                  0011 2589999999999999999999999888765 


Q ss_pred             chHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          216 LAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       216 ~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      ..+.+||+++...++++|++|+|+| +|++|++++|+|+.+|+ +|+
T Consensus       156 ~~~~ta~~~l~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~  201 (351)
T cd08233         156 EPLAVAWHAVRRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKII  201 (351)
T ss_pred             cHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            6778999999778999999999998 69999999999999999 553

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.94  E-value=2e-25  Score=203.24  Aligned_cols=167  Identities=23%  Similarity=0.318  Sum_probs=137.9

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ||++++++++.   ++++ +.+.|++ .++||+|||.++++|++|++.+.....   ..+|.++|||++|+|+++|++++
T Consensus         1 Mka~~~~~~~~---~~~~-~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~---~~~p~i~G~e~~G~V~~vG~~v~   73 (347)
T PRK10309          1 MKSVVNDTDGI---VRVA-ESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA---HYYPITLGHEFSGYVEAVGSGVD   73 (347)
T ss_pred             CceEEEeCCCc---eEEE-ECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC---CCCCcccccceEEEEEEeCCCCC
Confidence            79999988775   6676 8899988 589999999999999999875432111   12478999999999999999999


Q ss_pred             CCCCCCEEEEecCcccc------------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          163 EFKEGDEVYGDINEKAL------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~------------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      +|++||+|++.....|.                  .+....|+|+||+.++++.++++|+++++++++.+. .+.++|++
T Consensus        74 ~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~  152 (347)
T PRK10309         74 DLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHA  152 (347)
T ss_pred             CCCCCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHHH
Confidence            99999999986422111                  112236999999999999999999999999988763 45568888


Q ss_pred             HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      +....+++|++|+|+| +|++|++++|+|+.+|++
T Consensus       153 ~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~  186 (347)
T PRK10309        153 FHLAQGCEGKNVIIIG-AGTIGLLAIQCAVALGAK  186 (347)
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence            8778899999999997 799999999999999997

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.94  E-value=2.1e-25  Score=203.95  Aligned_cols=171  Identities=25%  Similarity=0.334  Sum_probs=145.0

Q ss_pred             eEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC-
Q 024775           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE-  163 (262)
Q Consensus        85 ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~-  163 (262)
                      |++++.++++  .++++ +.+.|.++++||+|||.++++|++|++...|.++.  ..+|.++|||++|+|+++|+++++ 
T Consensus         2 ka~~~~~~~~--~l~~~-~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~~~   76 (361)
T cd08231           2 RAAVLTGPGK--PLEIR-EVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR--VPLPIILGHEGVGRVVALGGGVTTD   76 (361)
T ss_pred             eEEEEcCCCC--CCEEE-eccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC--CCCCcccccCCceEEEEeCCCcccc
Confidence            7899998883  37777 88999999999999999999999999999887642  356789999999999999999986 


Q ss_pred             -----CCCCCEEEEecCccc------------------cCC-------CCCCCceeeEEEecCC-CeEECCCCCCHhhHh
Q 024775          164 -----FKEGDEVYGDINEKA------------------LEG-------PKQFGSLAEYTAVEER-LLAPKPKNLDFVQAA  212 (262)
Q Consensus       164 -----~~~Gd~V~~~~~~~~------------------~~~-------~~~~G~~ae~~~v~~~-~~~~lP~~~~~~~aa  212 (262)
                           |++||+|++.....|                  ..+       ....|+|++|+.++++ .++++|+++++++++
T Consensus        77 ~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa  156 (361)
T cd08231          77 VAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAA  156 (361)
T ss_pred             ccCCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHH
Confidence                 999999998732111                  000       1135899999999986 799999999999898


Q ss_pred             cccchHHHHHHHHHHcC-CCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          213 GLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       213 ~l~~~~~tA~~al~~~~-~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      .+++++.|||+++.+.. .++|++|||+| +|++|++++|+|+.+|+ +|+
T Consensus       157 ~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~  206 (361)
T cd08231         157 PANCALATVLAALDRAGPVGAGDTVVVQG-AGPLGLYAVAAAKLAGARRVI  206 (361)
T ss_pred             HhcCHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            88899999999998754 45999999997 79999999999999999 664

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=99.94  E-value=1.3e-25  Score=203.25  Aligned_cols=169  Identities=31%  Similarity=0.392  Sum_probs=149.1

Q ss_pred             eeEEEEcccCCc-ceEEEEeeecCCCCCC-CeEEEEEEEEecChhhHHhHcCCCCCCCC---CCCCCCCccEEEEEEEeC
Q 024775           84 MKAWLYGEYGGV-DVLKFDEKVTVPQVKE-DQVLIKVVAAALNPVDGKRRQGKFKATDS---PLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        84 ~ka~v~~~~g~~-~~l~~~~~~~~p~~~~-~eVlVkV~a~~i~~sD~~~~~g~~~~~~~---~~p~~~G~e~vG~Vv~vG  158 (262)
                      ||||++.+.+.+ +.++++ +.+.|.+.+ +||+||+.++++|+.|...+.|..+....   ..|.++|||++|+|+++|
T Consensus         1 ~~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG   79 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLE-SYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVG   79 (341)
T ss_pred             CceEEEccCCCchhheEEe-ecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeC
Confidence            899999988865 457777 888888887 99999999999999999998886542211   156789999999999999


Q ss_pred             CCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEE
Q 024775          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSIL  237 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~Vl  237 (262)
                      +++..|++||+|++...        ..|+|++|+.++.+.++++|+++++++++.+++.+.|||+++.. ..+++|++||
T Consensus        80 ~~v~~~~~Gd~V~~~~~--------~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vl  151 (341)
T cd08290          80 SGVKSLKPGDWVIPLRP--------GLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVI  151 (341)
T ss_pred             CCCCCCCCCCEEEecCC--------CCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEE
Confidence            99999999999998652        25899999999999999999999999999999999999999965 6899999999


Q ss_pred             EEcCchHHHHHHHHHHHHcCCccC
Q 024775          238 VLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       238 I~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |+|++|++|++++|+|+.+|++++
T Consensus       152 I~g~~g~vg~~~~~~a~~~g~~v~  175 (341)
T cd08290         152 QNGANSAVGQAVIQLAKLLGIKTI  175 (341)
T ss_pred             EccchhHHHHHHHHHHHHcCCeEE
Confidence            999899999999999999999864

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=99.94  E-value=3e-25  Score=199.74  Aligned_cols=168  Identities=28%  Similarity=0.321  Sum_probs=150.9

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      +||+|++.++|.+..++++ +++.|.+.++||+||+.++++|++|++...|.++.  ..+|.++|||++|+|+.+|++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~--~~~~~~~g~e~~G~v~~vG~~v~   77 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAV-EFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP--PSLPSGLGTEAAGVVSKVGSGVK   77 (327)
T ss_pred             CceEEEEeccCChhHeEEe-eccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC--CCCCCccCcceEEEEEEeCCCCC
Confidence            5999999999888888888 88999999999999999999999999988776543  23577899999999999999999


Q ss_pred             CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcC
Q 024775          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNG  241 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga  241 (262)
                      .+++||+|+....        ..|+|++|+.++.+.++++|+++++++++.++..+.++|.++.. ..+++|++|+|+|+
T Consensus        78 ~~~~Gd~V~~~~~--------~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~  149 (327)
T PRK10754         78 HIKVGDRVVYAQS--------ALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAA  149 (327)
T ss_pred             CCCCCCEEEECCC--------CCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence            9999999986431        25899999999999999999999999999888899999999864 78999999999999


Q ss_pred             chHHHHHHHHHHHHcCCccC
Q 024775          242 SGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       242 ~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +|.+|++++|+||.+|++|+
T Consensus       150 ~g~ig~~~~~lak~~G~~v~  169 (327)
T PRK10754        150 AGGVGLIACQWAKALGAKLI  169 (327)
T ss_pred             CcHHHHHHHHHHHHcCCEEE
Confidence            99999999999999999874

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.93  E-value=3.7e-25  Score=200.76  Aligned_cols=163  Identities=25%  Similarity=0.303  Sum_probs=136.4

Q ss_pred             eeEEEEcccCCcceEEEEeeecC----CCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccE--EEEEEEe
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTV----PQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDV--AGVVVKV  157 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~----p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~--vG~Vv~v  157 (262)
                      +|+|....+. .+.|+++ +.++    |+|++|||||||+|++||+.|++.+.|.... ...+|+++|+++  .|.+..+
T Consensus         8 ~~~~~~~~~~-~~~~~~~-~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~-~~~~p~~~g~~~~g~~~~~~v   84 (338)
T cd08295           8 LKAYVTGFPK-ESDLELR-TTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDS-LYLPPFKPGEVITGYGVAKVV   84 (338)
T ss_pred             EecCCCCCCC-ccceEEE-EecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCcc-ccCCCcCCCCeEeccEEEEEE
Confidence            6777754544 4568888 7776    8899999999999999999999988885332 124577888754  4566667


Q ss_pred             CCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecC-CCeEECC-CCCCHh-hHhcccchHHHHHHHHH-HcCCCCC
Q 024775          158 GTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEE-RLLAPKP-KNLDFV-QAAGLPLAIETAYEGLE-RTGFSAG  233 (262)
Q Consensus       158 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~-~~~~~lP-~~~~~~-~aa~l~~~~~tA~~al~-~~~~~~g  233 (262)
                      |+++..|++||+|++            .|+|+||+++++ ..++++| ++++++ +++.+++++.|||+++. ..++++|
T Consensus        85 ~~~v~~~~vGd~V~~------------~g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g  152 (338)
T cd08295          85 DSGNPDFKVGDLVWG------------FTGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKG  152 (338)
T ss_pred             ecCCCCCCCCCEEEe------------cCCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCC
Confidence            888889999999986            368999999999 7999995 678876 78889999999999995 4789999


Q ss_pred             CEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          234 KSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++|||+|++|++|++++|+||.+|++|+
T Consensus       153 ~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi  180 (338)
T cd08295         153 ETVFVSAASGAVGQLVGQLAKLKGCYVV  180 (338)
T ss_pred             CEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence            9999999999999999999999999874

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.93  E-value=5.9e-25  Score=198.89  Aligned_cols=174  Identities=32%  Similarity=0.408  Sum_probs=147.5

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC-CCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~-~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ||+|++.+++..  +++. +.+.|++.++||+||+.++++|++|+....|.++. ....+|.++|+|++|+|+++|+++.
T Consensus         1 ~ka~~~~~~~~~--~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~   77 (340)
T cd05284           1 MKAARLYEYGKP--LRLE-DVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVD   77 (340)
T ss_pred             CeeeEeccCCCC--ceEE-eCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCC
Confidence            799999987643  6666 78889999999999999999999999998886543 2355678999999999999999999


Q ss_pred             CCCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          163 EFKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      .|++||+|+++....+                  ..+....|+|++|+.++.+.++++|+++++++++.+++.+.|||++
T Consensus        78 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~  157 (340)
T cd05284          78 GLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHA  157 (340)
T ss_pred             cCcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHH
Confidence            9999999998642110                  1122346899999999999999999999999999999999999999


Q ss_pred             HHHc--CCCCCCEEEEEcCchHHHHHHHHHHHHcC-CccC
Q 024775          225 LERT--GFSAGKSILVLNGSGGVGSLVIQVCYYYL-EFFF  261 (262)
Q Consensus       225 l~~~--~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G-a~V~  261 (262)
                      +...  .+.+|++|||+| +|++|++++|+|+.+| .+|+
T Consensus       158 l~~~~~~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~  196 (340)
T cd05284         158 VKKALPYLDPGSTVVVIG-VGGLGHIAVQILRALTPATVI  196 (340)
T ss_pred             HHHhcccCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEE
Confidence            9653  688999999999 6679999999999999 6764

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08293 PTGR2 Prostaglandin reductase

Probab=99.93  E-value=3.5e-25  Score=200.91  Aligned_cols=155  Identities=20%  Similarity=0.196  Sum_probs=127.4

Q ss_pred             cceEEEEeeecCCCCC-CCeEEEEEEEEecChhhHHhHcCCCC-CCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEE
Q 024775           95 VDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYG  172 (262)
Q Consensus        95 ~~~l~~~~~~~~p~~~-~~eVlVkV~a~~i~~sD~~~~~g~~~-~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~  172 (262)
                      ++.++++ +.+.|++. +|||||||.|+|||+.|+........ ....++|.++|||++|+|+++|++++.|++||+|++
T Consensus        20 ~~~~~~~-~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~   98 (345)
T cd08293          20 AENFRVE-ECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTS   98 (345)
T ss_pred             ccceEEE-eccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEe
Confidence            3678888 88999875 99999999999999999643321111 111346789999999999999999999999999987


Q ss_pred             ecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHh----hHhcccchHHHHHHHHH-HcCCCCC--CEEEEEcCchHH
Q 024775          173 DINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFV----QAAGLPLAIETAYEGLE-RTGFSAG--KSILVLNGSGGV  245 (262)
Q Consensus       173 ~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~----~aa~l~~~~~tA~~al~-~~~~~~g--~~VlI~Ga~G~v  245 (262)
                      +           .++|+||++++++.++++|+++++.    .+++++.++.|||+++. ..++++|  ++|||+|++|++
T Consensus        99 ~-----------~~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~v  167 (345)
T cd08293          99 F-----------NWPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGAC  167 (345)
T ss_pred             c-----------CCCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHH
Confidence            3           1579999999999999999985332    24566788999999995 4678877  999999999999


Q ss_pred             HHHHHHHHHHcCC-ccC
Q 024775          246 GSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       246 G~~aiqlAk~~Ga-~V~  261 (262)
                      |++++|+||.+|+ +|+
T Consensus       168 G~~aiqlAk~~G~~~Vi  184 (345)
T cd08293         168 GSLAGQIGRLLGCSRVV  184 (345)
T ss_pred             HHHHHHHHHHcCCCEEE
Confidence            9999999999998 665

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.93  E-value=5e-25  Score=203.14  Aligned_cols=171  Identities=25%  Similarity=0.308  Sum_probs=145.8

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||+.++...+..  ++++ +.+.|.+.++||+|||.++++|++|++.+.|..+   ..+|.++|||++|+|+++|++++.
T Consensus         8 ~~a~~~~~~~~~--~~l~-~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~---~~~p~v~G~e~~G~V~~vG~~v~~   81 (373)
T cd08299           8 CKAAVLWEPKKP--FSIE-EIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV---TPFPVILGHEAAGIVESVGEGVTT   81 (373)
T ss_pred             eEEEEEecCCCC--cEEE-EeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC---CCCCccccccceEEEEEeCCCCcc
Confidence            889888876654  6666 8899999999999999999999999999988652   346789999999999999999999


Q ss_pred             CCCCCEEEEecCc--------------cccC-------------------------CCCCCCceeeEEEecCCCeEECCC
Q 024775          164 FKEGDEVYGDINE--------------KALE-------------------------GPKQFGSLAEYTAVEERLLAPKPK  204 (262)
Q Consensus       164 ~~~Gd~V~~~~~~--------------~~~~-------------------------~~~~~G~~ae~~~v~~~~~~~lP~  204 (262)
                      +++||+|+++...              .|..                         .....|+|+||++++++.++++|+
T Consensus        82 ~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~  161 (373)
T cd08299          82 VKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDA  161 (373)
T ss_pred             CCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCC
Confidence            9999999886211              0000                         001258999999999999999999


Q ss_pred             CCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          205 NLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       205 ~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      ++++++++.+.+++.+||+++. ..++++|++|+|+| +|++|++++++|+.+|+ +|+
T Consensus       162 ~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~~~~~a~~~G~~~Vi  219 (373)
T cd08299         162 AAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSAIMGCKAAGASRII  219 (373)
T ss_pred             CCChHHhheeccchHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            9999999999999999999874 58899999999996 79999999999999998 554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=9.4e-25  Score=194.20  Aligned_cols=161  Identities=33%  Similarity=0.408  Sum_probs=143.4

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||+|++.+.+ +..++++ +.+.|.++++||+||+.++++|+.|.+...+.      ..+.++|+|++|+|+++|+++..
T Consensus         1 ~~~~~~~~~~-~~~~~~~-~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~------~~~~~~g~e~~G~v~~~G~~v~~   72 (305)
T cd08270           1 MRALVVDPDA-PLRLRLG-EVPDPQPAPHEALVRVAAISLNRGELKFAAER------PDGAVPGWDAAGVVERAAADGSG   72 (305)
T ss_pred             CeEEEEccCC-CceeEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHhhccC------CCCCcccceeEEEEEEeCCCCCC
Confidence            6899998866 6668777 88889999999999999999999999876521      22568999999999999999999


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCch
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSG  243 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G  243 (262)
                      |++||+|+++..         .|+|++|+.++.+.++++|+++++++++.+++.+.+||+++.+....+|++|+|+|+.|
T Consensus        73 ~~~Gd~V~~~~~---------~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vli~g~~~  143 (305)
T cd08270          73 PAVGARVVGLGA---------MGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPLLGRRVLVTGASG  143 (305)
T ss_pred             CCCCCEEEEecC---------CcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCCCCCEEEEECCCc
Confidence            999999998752         58999999999999999999999999999999999999999776555699999999889


Q ss_pred             HHHHHHHHHHHHcCCccC
Q 024775          244 GVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       244 ~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++|++++++|+.+|++|+
T Consensus       144 ~~g~~~~~~a~~~g~~v~  161 (305)
T cd08270         144 GVGRFAVQLAALAGAHVV  161 (305)
T ss_pred             HHHHHHHHHHHHcCCEEE
Confidence            999999999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>PRK10083 putative oxidoreductase; Provisional

Probab=99.93  E-value=8.6e-25  Score=197.92  Aligned_cols=169  Identities=24%  Similarity=0.247  Sum_probs=142.2

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||+++.+++.   ++++ +.+.|.++++||+||+.++++|++|++.+.|..+.  .++|.++|||++|+|+++|+++..
T Consensus         1 m~a~~~~~~~~---~~~~-~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v~~   74 (339)
T PRK10083          1 MKSIVIEKPNS---LAIE-ERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPF--AKYPRVIGHEFFGVIDAVGEGVDA   74 (339)
T ss_pred             CeEEEEecCCe---eEEE-eccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCc--CCCCcccccceEEEEEEECCCCcc
Confidence            78999988764   7777 88999999999999999999999999998886543  246889999999999999999999


Q ss_pred             CCCCCEEEEecCcccc------C------------CCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775          164 FKEGDEVYGDINEKAL------E------------GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~------~------------~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al  225 (262)
                      +++||+|+......|.      .            +....|+|++|+.++...++++|+++++++++ +...+.++|+++
T Consensus        75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~~~  153 (339)
T PRK10083         75 ARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAANVT  153 (339)
T ss_pred             CCCCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHHHH
Confidence            9999999864321110      0            11235899999999999999999999998776 556778888766


Q ss_pred             HHcCCCCCCEEEEEcCchHHHHHHHHHHHH-cCCcc
Q 024775          226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYY-YLEFF  260 (262)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~-~Ga~V  260 (262)
                      +..++++|++|+|+| +|++|++++|+|+. +|+++
T Consensus       154 ~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~  188 (339)
T PRK10083        154 GRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKA  188 (339)
T ss_pred             HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCE
Confidence            778999999999999 89999999999997 59863

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=99.93  E-value=8.9e-25  Score=197.58  Aligned_cols=171  Identities=25%  Similarity=0.284  Sum_probs=145.8

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||++++++++....  ++ +.+.|.+.++||+|||.++++|++|++.+.|..+.   ..|.++|||++|+|+++|++++.
T Consensus         1 mka~~~~~~~~~~~--~~-~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~---~~~~~~g~e~~G~V~~~G~~v~~   74 (338)
T PRK09422          1 MKAAVVNKDHTGDV--VV-EKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD---KTGRILGHEGIGIVKEVGPGVTS   74 (338)
T ss_pred             CeEEEecCCCCCce--EE-EecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC---CCCccCCcccceEEEEECCCCcc
Confidence            89999999887543  44 88999999999999999999999999998886542   23678999999999999999999


Q ss_pred             CCCCCEEEEecCc-------cc------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          164 FKEGDEVYGDINE-------KA------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       164 ~~~Gd~V~~~~~~-------~~------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      |++||+|++....       .+            ..+....|++++|+.++...++++|+++++++++.++..+.|||++
T Consensus        75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~  154 (338)
T PRK09422         75 LKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKA  154 (338)
T ss_pred             CCCCCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHH
Confidence            9999999872110       00            0011236899999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHc-CCccC
Q 024775          225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYY-LEFFF  261 (262)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-Ga~V~  261 (262)
                      ++.+++++|++|||+| +|++|++++++|+.+ |++|+
T Consensus       155 ~~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~  191 (338)
T PRK09422        155 IKVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVI  191 (338)
T ss_pred             HHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEE
Confidence            9778999999999999 799999999999984 98865

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.93  E-value=7.9e-25  Score=196.86  Aligned_cols=158  Identities=23%  Similarity=0.253  Sum_probs=133.6

Q ss_pred             ceeEEEEcc-c-CCc--ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775           83 EMKAWLYGE-Y-GGV--DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        83 ~~ka~v~~~-~-g~~--~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      +||+|++.+ + ++.  +.++++ +.+.|+|++|||+|||.+++||+.|.....+     ..++|.++|+|++|+|++  
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~p~~~~~evlVkv~a~~in~~~~~~~~~-----~~~~p~v~G~e~~G~V~~--   73 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELV-EEELPPLKDGEVLCEALFLSVDPYMRPYSKR-----LNEGDTMIGTQVAKVIES--   73 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEE-ecCCCCCCCCcEEEEEEEEecCHHHhccccc-----CCCCCcEecceEEEEEec--
Confidence            599999999 4 554  779998 8999999999999999999999987642111     124578999999999985  


Q ss_pred             CCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCC---CeEECCCCCC-----HhhHhcccchHHHHHHHHH-HcC
Q 024775          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEER---LLAPKPKNLD-----FVQAAGLPLAIETAYEGLE-RTG  229 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~---~~~~lP~~~~-----~~~aa~l~~~~~tA~~al~-~~~  229 (262)
                       .++.|++||+|++.            ++|++|++++.+   .++++|++++     ....+.+++.+.|||+++. ..+
T Consensus        74 -~~~~~~~Gd~V~~~------------~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~  140 (329)
T cd08294          74 -KNSKFPVGTIVVAS------------FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICK  140 (329)
T ss_pred             -CCCCCCCCCEEEee------------CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcC
Confidence             45679999999873            478999999999   9999999987     2333467889999999985 588


Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +++|++|||+|++|++|++++|+|+.+|++|+
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi  172 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVI  172 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999999999999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=99.93  E-value=7.7e-25  Score=196.95  Aligned_cols=173  Identities=34%  Similarity=0.494  Sum_probs=147.0

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||+|++..++ .+.++++ +.+.|+++++||+||+.++++|++|+..+.+.. .  ..+|.++|||++|+|+.+|+++..
T Consensus         1 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~~-~--~~~~~~~g~e~~G~v~~vG~~v~~   75 (325)
T cd08264           1 MKALVFEKSG-IENLKVE-DVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVK-V--KPMPHIPGAEFAGVVEEVGDHVKG   75 (325)
T ss_pred             CeeEEeccCC-CCceEEE-eccCCCCCCCeEEEEEEEEEechHHHHHHhCCC-C--CCCCeecccceeEEEEEECCCCCC
Confidence            7899998776 5557777 777788999999999999999999998876421 1  235678999999999999999999


Q ss_pred             CCCCCEEEEecCccc------c------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775          164 FKEGDEVYGDINEKA------L------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~------~------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al  225 (262)
                      |++||+|+......|      .            .+....|+|++|+.++...++++|+++++++++.+++.+.+||+++
T Consensus        76 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l  155 (325)
T cd08264          76 VKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHAL  155 (325)
T ss_pred             CCCCCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHH
Confidence            999999997632111      0            0111368999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ...++++|++|+|+|++|++|++++++|+.+|++|+
T Consensus       156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~  191 (325)
T cd08264         156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVI  191 (325)
T ss_pred             HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEE
Confidence            888999999999999889999999999999999864

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=99.93  E-value=1.6e-24  Score=194.05  Aligned_cols=170  Identities=32%  Similarity=0.369  Sum_probs=148.3

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCC-CCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-DSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      |||+++.+++....+++. +.+.|.+.++||+|++.++++|+.|+....|..+.. ....|.++|+|++|+|+++|+++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~   79 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPE-DVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVD   79 (324)
T ss_pred             CeEEEEcCCCCccceEEe-ccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCC
Confidence            799999888877667776 667777899999999999999999999887754321 234567899999999999999999


Q ss_pred             CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCc
Q 024775          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGS  242 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~  242 (262)
                      .+++||+|++...       ...|+|++|+.++...++++|+++++++++.+++.+.|||..++..+++++++|+|+|++
T Consensus        80 ~~~~Gd~V~~~~~-------~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~~~~~~~~~~~~vlI~g~~  152 (324)
T cd08244          80 PAWLGRRVVAHTG-------RAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGLLDLATLTPGDVVLVTAAA  152 (324)
T ss_pred             CCCCCCEEEEccC-------CCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            9999999998652       135899999999999999999999999999999999999766677899999999999999


Q ss_pred             hHHHHHHHHHHHHcCCccC
Q 024775          243 GGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       243 G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++++++|+.+|++|+
T Consensus       153 ~~~g~~~~~la~~~g~~v~  171 (324)
T cd08244         153 GGLGSLLVQLAKAAGATVV  171 (324)
T ss_pred             chHHHHHHHHHHHCCCEEE
Confidence            9999999999999999875

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.93  E-value=1.2e-24  Score=201.46  Aligned_cols=182  Identities=31%  Similarity=0.440  Sum_probs=148.8

Q ss_pred             CcccceeEEEEcc--cCCc-ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCC-------CCC-CCCCCC
Q 024775           79 TVPSEMKAWLYGE--YGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-------DSP-LPTVPG  147 (262)
Q Consensus        79 ~~p~~~ka~v~~~--~g~~-~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~-------~~~-~p~~~G  147 (262)
                      .+|.+||++++..  .+.+ +.++++ +.+.|.++++||+||+.+++||.+|++...+.....       ... .+.++|
T Consensus         8 ~~~~~~~a~~~~~~~~g~~~~~~~~~-~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G   86 (393)
T cd08246           8 VVPEKMYAFAIRPERYGDPAQAIQLE-DVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGG   86 (393)
T ss_pred             cCchhhhheeeecccCCCcccceEEe-ecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccc
Confidence            5899999999863  3434 347777 889999999999999999999999998876641100       001 125889


Q ss_pred             ccEEEEEEEeCCCCCCCCCCCEEEEecCccc------cCC-------------CCCCCceeeEEEecCCCeEECCCCCCH
Q 024775          148 YDVAGVVVKVGTQVKEFKEGDEVYGDINEKA------LEG-------------PKQFGSLAEYTAVEERLLAPKPKNLDF  208 (262)
Q Consensus       148 ~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~------~~~-------------~~~~G~~ae~~~v~~~~~~~lP~~~~~  208 (262)
                      ||++|+|+++|++++.+++||+|++.+...|      ..+             ....|+|++|+.++...++++|+++++
T Consensus        87 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~  166 (393)
T cd08246          87 SDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSW  166 (393)
T ss_pred             cceEEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCH
Confidence            9999999999999999999999998753111      110             012589999999999999999999999


Q ss_pred             hhHhcccchHHHHHHHHHH---cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          209 VQAAGLPLAIETAYEGLER---TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       209 ~~aa~l~~~~~tA~~al~~---~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++++.+++.+.|||+++..   +++++|++|+|+|+.|++|++++++|+.+|++++
T Consensus       167 ~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv  222 (393)
T cd08246         167 EEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPV  222 (393)
T ss_pred             HHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEE
Confidence            9999999999999999853   5789999999999889999999999999999864

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=99.93  E-value=1.4e-24  Score=194.93  Aligned_cols=173  Identities=32%  Similarity=0.368  Sum_probs=149.1

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||++++...+.  .++++ +.+.|.+.++||+|++.++++|+.|++.+.|.++.  .+.|.++|+|++|+|+++|++++.
T Consensus         1 m~a~~~~~~~~--~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~v~~~G~~v~~   75 (332)
T cd08259           1 MKAAILHKPNK--PLQIE-EVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR--GKYPLILGHEIVGTVEEVGEGVER   75 (332)
T ss_pred             CeEEEEecCCC--ceEEE-EccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCC--CCCCeeccccceEEEEEECCCCcc
Confidence            78999977332  37777 88899999999999999999999999998886653  345789999999999999999999


Q ss_pred             CCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775          164 FKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al  225 (262)
                      +++||+|+++....|                  ..+....|++++|+.++...++++|+++++++++.+++++.+||+++
T Consensus        76 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l  155 (332)
T cd08259          76 FKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL  155 (332)
T ss_pred             CCCCCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHH
Confidence            999999998652111                  01112368999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +...+++|++++|+|++|++|++++++++..|++|+
T Consensus       156 ~~~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~  191 (332)
T cd08259         156 KRAGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVI  191 (332)
T ss_pred             HHhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEE
Confidence            778899999999999999999999999999999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=99.93  E-value=1.5e-24  Score=195.76  Aligned_cols=173  Identities=32%  Similarity=0.399  Sum_probs=149.6

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||++++.++++.  ++++ +.+.|.+.+|||+||+.++++|+.|++...|.++.  .++|.++|+|++|+|+++|+++..
T Consensus         1 m~a~~~~~~~~~--~~~~-~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~v~~~g~~~~~   75 (334)
T PRK13771          1 MKAVILPGFKQG--YRIE-EVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR--MKYPVILGHEVVGTVEEVGENVKG   75 (334)
T ss_pred             CeeEEEcCCCCC--cEEE-eCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCC--CCCCeeccccceEEEEEeCCCCcc
Confidence            789999988863  6676 88999999999999999999999999988886543  345788999999999999999988


Q ss_pred             CCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775          164 FKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al  225 (262)
                      +++||+|++.....|                  ..+....|+|++|+.++.+.++++|+++++.+++.+++.+.+||+++
T Consensus        76 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~  155 (334)
T PRK13771         76 FKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL  155 (334)
T ss_pred             CCCCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHH
Confidence            999999998641111                  01112268999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ....++++++|+|+|++|.+|++++|+|+..|++++
T Consensus       156 ~~~~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi  191 (334)
T PRK13771        156 RRAGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVI  191 (334)
T ss_pred             HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCEEE
Confidence            777899999999999889999999999999999864

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.93  E-value=1.1e-24  Score=200.08  Aligned_cols=170  Identities=28%  Similarity=0.331  Sum_probs=145.2

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      ++|||+++.+++..  ++++ +.+.|.+.++||+|||.++++|++|++...|.++   ..+|.++|+|++|+|+++|+++
T Consensus         1 ~~~~a~~~~~~~~~--~~~~-~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~---~~~p~v~G~e~~G~V~~vG~~v   74 (365)
T cd08278           1 MKTTAAVVREPGGP--FVLE-DVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP---TPLPAVLGHEGAGVVEAVGSAV   74 (365)
T ss_pred             CccEEeeeccCCCc--ceEE-EeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC---CCCCcccccceeEEEEEeCCCc
Confidence            36899999987654  5666 8899999999999999999999999999988654   3457899999999999999999


Q ss_pred             CCCCCCCEEEEecCcccc------C---------------C--------------------CCCCCceeeEEEecCCCeE
Q 024775          162 KEFKEGDEVYGDINEKAL------E---------------G--------------------PKQFGSLAEYTAVEERLLA  200 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~~------~---------------~--------------------~~~~G~~ae~~~v~~~~~~  200 (262)
                      ..|++||+|++... .|.      .               +                    ....|+|++|+.++++.++
T Consensus        75 ~~~~~Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~  153 (365)
T cd08278          75 TGLKPGDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVV  153 (365)
T ss_pred             ccCCCCCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEE
Confidence            99999999996321 000      0               0                    0124899999999999999


Q ss_pred             ECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          201 PKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       201 ~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      ++|+++++++++.+++++.|||.++. ...+++|++|+|+| +|++|++++|+|+.+|++
T Consensus       154 ~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g-~g~vG~~~~~la~~~G~~  212 (365)
T cd08278         154 KVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFG-AGAVGLAAVMAAKIAGCT  212 (365)
T ss_pred             ECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999984 57899999999997 799999999999999995

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.93  E-value=1.3e-24  Score=198.09  Aligned_cols=169  Identities=26%  Similarity=0.316  Sum_probs=144.4

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||+++.++++   ++++ +.+.|.+.++||+|||.++++|++|++.+.+..+.  ..+|.++|||++|+|+++|+++.+
T Consensus         1 mka~~~~~~~~---~~l~-~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~--~~~~~~~G~e~~G~V~~vG~~v~~   74 (351)
T cd08285           1 MKAFAMLGIGK---VGWI-EKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG--ERHGMILGHEAVGVVEEVGSEVKD   74 (351)
T ss_pred             CceEEEccCCc---cEEE-ECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC--CCCCcccCcceEEEEEEecCCcCc
Confidence            79999998875   5565 78888899999999999999999999988776543  345789999999999999999999


Q ss_pred             CCCCCEEEEecCcccc-------------C--------CCCCCCceeeEEEecCC--CeEECCCCCCHhhHhcccchHHH
Q 024775          164 FKEGDEVYGDINEKAL-------------E--------GPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAIET  220 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~-------------~--------~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~~aa~l~~~~~t  220 (262)
                      +++||+|++.....|.             .        +....|+|+||+.++..  .++++|+++++++++.++..+.|
T Consensus        75 ~~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~t  154 (351)
T cd08285          75 FKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMST  154 (351)
T ss_pred             cCCCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhh
Confidence            9999999984311110             0        01136899999999974  89999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       221 A~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      ||+++++.++++|++|||+| +|++|++++|+||.+|+.
T Consensus       155 a~~~~~~~~~~~g~~vlI~g-~g~iG~~~~~lak~~G~~  192 (351)
T cd08285         155 GFHGAELANIKLGDTVAVFG-IGPVGLMAVAGARLRGAG  192 (351)
T ss_pred             HHHHHHccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence            99998888999999999997 799999999999999995

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.93  E-value=1.5e-24  Score=201.41  Aligned_cols=182  Identities=31%  Similarity=0.421  Sum_probs=149.8

Q ss_pred             CcccceeEEEEcc--cCCc-ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC--------CCCCCC-CCC
Q 024775           79 TVPSEMKAWLYGE--YGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA--------TDSPLP-TVP  146 (262)
Q Consensus        79 ~~p~~~ka~v~~~--~g~~-~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~--------~~~~~p-~~~  146 (262)
                      .+|++||||++..  ++++ +.+++. +.+.|.+.++||+||+.++++|..|.+...+....        .....| .++
T Consensus         3 ~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~   81 (398)
T TIGR01751         3 VVPETMYAFAIREERDGDPRQAIQLE-VVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHII   81 (398)
T ss_pred             ccchhhhheEEecccCCCcccceEEe-ecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceec
Confidence            4789999999965  6665 568887 88999999999999999999999998776553210        000123 379


Q ss_pred             CccEEEEEEEeCCCCCCCCCCCEEEEecCccc------cC-------------CCCCCCceeeEEEecCCCeEECCCCCC
Q 024775          147 GYDVAGVVVKVGTQVKEFKEGDEVYGDINEKA------LE-------------GPKQFGSLAEYTAVEERLLAPKPKNLD  207 (262)
Q Consensus       147 G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~------~~-------------~~~~~G~~ae~~~v~~~~~~~lP~~~~  207 (262)
                      |||++|+|+++|++++.+++||+|++.+...|      ..             .....|+|+||+.+++..++++|++++
T Consensus        82 G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~  161 (398)
T TIGR01751        82 GSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLT  161 (398)
T ss_pred             ccceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCC
Confidence            99999999999999999999999998653111      00             011358999999999999999999999


Q ss_pred             HhhHhcccchHHHHHHHHHH---cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          208 FVQAAGLPLAIETAYEGLER---TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       208 ~~~aa~l~~~~~tA~~al~~---~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +++++.+++.+.+||+++..   .++++|++|+|+|++|++|++++|+|+.+|++++
T Consensus       162 ~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi  218 (398)
T TIGR01751       162 WEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPV  218 (398)
T ss_pred             HHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEE
Confidence            99999999999999999853   6789999999999889999999999999999864

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=99.93  E-value=1.8e-24  Score=193.84  Aligned_cols=171  Identities=30%  Similarity=0.366  Sum_probs=145.3

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||++++.++..+.++++ +.+.|.++++||+|++.++++|++|+..+.|..+.. ..+|.++|||++|+|+++  +++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~--~~~~   76 (325)
T cd05280           1 FKALVVEEQDGGVSLFLR-TLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVT-RNYPHTPGIDAAGTVVSS--DDPR   76 (325)
T ss_pred             CceEEEcccCCCCcceEE-eCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCC-CCCCCccCcccEEEEEEe--CCCC
Confidence            799999999876668888 889999999999999999999999999988865432 345789999999999999  4668


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH---cCCC-CCCEEEEE
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER---TGFS-AGKSILVL  239 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~---~~~~-~g~~VlI~  239 (262)
                      |++||+|++....   .+....|+|++|+.++.+.++++|+++++++++.+++.+.++|+++..   .++. .+++|+|+
T Consensus        77 ~~~Gd~V~~~~~~---~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~  153 (325)
T cd05280          77 FREGDEVLVTGYD---LGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVT  153 (325)
T ss_pred             CCCCCEEEEcccc---cCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEE
Confidence            9999999985311   111236899999999999999999999999999999999999999854   2345 45799999


Q ss_pred             cCchHHHHHHHHHHHHcCCccC
Q 024775          240 NGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       240 Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++|++++|+||.+|++|+
T Consensus       154 g~~g~vg~~~~~~a~~~g~~v~  175 (325)
T cd05280         154 GATGGVGSIAVAILAKLGYTVV  175 (325)
T ss_pred             CCccHHHHHHHHHHHHcCCEEE
Confidence            9889999999999999999875

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.93  E-value=9.1e-25  Score=200.07  Aligned_cols=169  Identities=30%  Similarity=0.362  Sum_probs=130.5

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCC-CCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPT-VPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~-~~G~e~vG~Vv~vG~~v~  162 (262)
                      |+++++...+...  +++ +.+.|.+.++||+|||.++|||++|++.+++..+..  +.+. ++|||++|+|+++| .++
T Consensus         1 m~a~~~~~~~~~~--~~~-~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~--~~~~~i~GHE~~G~V~evG-~~~   74 (350)
T COG1063           1 MKAAVVYVGGGDV--RLE-EPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFV--PPGDIILGHEFVGEVVEVG-VVR   74 (350)
T ss_pred             CceeEEEecCCcc--ccc-cCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCC--CCCCcccCccceEEEEEec-ccc
Confidence            5666666655432  233 666667889999999999999999999999976543  3334 99999999999999 778


Q ss_pred             CCCCCCEEEEecCccc-------------cC-----C-----CCCCCceeeEEEecCCCeE-ECCCCCCHhhHhcccchH
Q 024775          163 EFKEGDEVYGDINEKA-------------LE-----G-----PKQFGSLAEYTAVEERLLA-PKPKNLDFVQAAGLPLAI  218 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~-------------~~-----~-----~~~~G~~ae~~~v~~~~~~-~lP~~~~~~~aa~l~~~~  218 (262)
                      .+++||+|+..+...|             +.     +     ...+|+|+||+.+|.+.++ ++|+++ ..+.+++...+
T Consensus        75 ~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epl  153 (350)
T COG1063          75 GFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEPL  153 (350)
T ss_pred             CCCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCC-ChhhhhhcChh
Confidence            8999999987643211             11     1     1146999999999975544 558887 56777788888


Q ss_pred             HHHHHHH-HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775          219 ETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF  260 (262)
Q Consensus       219 ~tA~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V  260 (262)
                      .++|++. .+...+++++|+|+| +|++|++++++||.+|+..
T Consensus       154 a~~~~~~a~~~~~~~~~~V~V~G-aGpIGLla~~~a~~~Ga~~  195 (350)
T COG1063         154 ATAYHGHAERAAVRPGGTVVVVG-AGPIGLLAIALAKLLGASV  195 (350)
T ss_pred             hhhhhhhhhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCce
Confidence            8998884 455666666999999 9999999999999999853

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=99.93  E-value=1.7e-24  Score=194.82  Aligned_cols=165  Identities=26%  Similarity=0.348  Sum_probs=147.2

Q ss_pred             ceeEEEEcccCC--cceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775           83 EMKAWLYGEYGG--VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (262)
Q Consensus        83 ~~ka~v~~~~g~--~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~  160 (262)
                      .||||++++++.  .+.++++ +.+.|.+.++||+|||.++++|+.|++...|.++.. ..+|.++|+|++|+|+.+|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~-~~~p~~~g~e~~G~v~~vG~~   78 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIV-DVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPG-VKPPFDCGFEGVGEVVAVGEG   78 (329)
T ss_pred             CceEEEeccCCCCcccCceEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCC-CCCCcccCceeEEEEEEECCC
Confidence            399999999887  6778888 888899999999999999999999999888765432 356789999999999999999


Q ss_pred             CCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEE
Q 024775          161 VKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVL  239 (262)
Q Consensus       161 v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~  239 (262)
                      +..+++||+|+++.          .|+|++|+.++...++++|++  +.+++.++.++.+||+++.+ .++++|++|+|+
T Consensus        79 v~~~~~Gd~V~~~~----------~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~  146 (329)
T cd08250          79 VTDFKVGDAVATMS----------FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVT  146 (329)
T ss_pred             CCCCCCCCEEEEec----------CcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEE
Confidence            99999999999864          589999999999999999987  34677789999999999965 689999999999


Q ss_pred             cCchHHHHHHHHHHHHcCCccC
Q 024775          240 NGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       240 Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|.+|++++|+|+..|++|+
T Consensus       147 ga~g~ig~~~~~~a~~~g~~v~  168 (329)
T cd08250         147 AAAGGTGQFAVQLAKLAGCHVI  168 (329)
T ss_pred             eCccHHHHHHHHHHHHcCCeEE
Confidence            9999999999999999999865

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.93  E-value=2.6e-24  Score=198.32  Aligned_cols=170  Identities=24%  Similarity=0.298  Sum_probs=142.6

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ||+|++.+++.   ++++ ++++|.+ +++||+|||.++++|++|++.+.|..+   ..+|.++|||++|+|+++|+++.
T Consensus         1 m~~~~~~~~~~---~~~~-~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~---~~~p~~~g~e~~G~V~~vG~~v~   73 (375)
T cd08282           1 MKAVVYGGPGN---VAVE-DVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG---AEPGLVLGHEAMGEVEEVGSAVE   73 (375)
T ss_pred             CceEEEecCCc---eeEE-eCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC---CCCCceeccccEEEEEEeCCCCC
Confidence            68999977654   7777 8899986 799999999999999999999988764   34578999999999999999999


Q ss_pred             CCCCCCEEEEecCccccC----------------------------CCCCCCceeeEEEecCC--CeEECCCCCCHh---
Q 024775          163 EFKEGDEVYGDINEKALE----------------------------GPKQFGSLAEYTAVEER--LLAPKPKNLDFV---  209 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~~----------------------------~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~---  209 (262)
                      .+++||+|++.....|..                            .....|+|++|+.++..  .++++|++++++   
T Consensus        74 ~~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~  153 (375)
T cd08282          74 SLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKD  153 (375)
T ss_pred             cCCCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhh
Confidence            999999998743211110                            01124899999999975  899999999988   


Q ss_pred             hHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          210 QAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       210 ~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      +++.++..+.+||+++..+++++|++|+|.| +|++|++++|+|+.+|+ +|+
T Consensus       154 ~~a~~~~~~~ta~~a~~~~~~~~g~~vlI~g-~g~vg~~~~~~a~~~G~~~vi  205 (375)
T cd08282         154 DYLMLSDIFPTGWHGLELAGVQPGDTVAVFG-AGPVGLMAAYSAILRGASRVY  205 (375)
T ss_pred             heeeecchHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            5677788899999999778999999999976 79999999999999997 553

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.93  E-value=2.9e-24  Score=194.59  Aligned_cols=175  Identities=31%  Similarity=0.418  Sum_probs=149.2

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||+++.+++ ...++++ +.+.|.+.++||+||+.+.++|+.|...+.+.++.. .+.|..+|+|++|+|+++|+++..
T Consensus         1 m~a~~~~~~~-~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~V~~vG~~~~~   77 (341)
T cd08297           1 MKAAVVEEFG-EKPYEVK-DVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVK-PKLPLIGGHEGAGVVVAVGPGVSG   77 (341)
T ss_pred             CceEEeeccC-CCCceEE-EeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcC-CCCCccCCcccceEEEEeCCCCCC
Confidence            7999998887 3347777 888899999999999999999999999888766432 345678999999999999999999


Q ss_pred             CCCCCEEEEecC-----cc--------------ccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          164 FKEGDEVYGDIN-----EK--------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       164 ~~~Gd~V~~~~~-----~~--------------~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      +++||+|+....     ..              ...+....|++++|+.++++.++++|+++++.+++.++..+.|||++
T Consensus        78 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~  157 (341)
T cd08297          78 LKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKA  157 (341)
T ss_pred             CCCCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHH
Confidence            999999987520     00              00111235899999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +...++++|++|||+|+.+++|++++++|+.+|++|+
T Consensus       158 ~~~~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~  194 (341)
T cd08297         158 LKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVI  194 (341)
T ss_pred             HHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE
Confidence            9878999999999999888899999999999999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.93  E-value=2e-24  Score=195.83  Aligned_cols=170  Identities=26%  Similarity=0.320  Sum_probs=145.9

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ||+|++.+++.   +++. +.+.|.+ .++||+||+.++++|+.|++.+.|.++.  .++|.++|+|++|+|+++|+++.
T Consensus         1 ~ka~~~~~~~~---~~~~-~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~vG~~v~   74 (347)
T cd05278           1 MKALVYLGPGK---IGLE-EVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG--AKHGMILGHEFVGEVVEVGSDVK   74 (347)
T ss_pred             CceEEEecCCc---eEEE-EcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC--CCCCceeccceEEEEEEECCCcc
Confidence            68999988765   6666 8888889 8999999999999999999998887654  45578999999999999999999


Q ss_pred             CCCCCCEEEEecCcccc---------------------CCCCCCCceeeEEEecCC--CeEECCCCCCHhhHhcccchHH
Q 024775          163 EFKEGDEVYGDINEKAL---------------------EGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAIE  219 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~---------------------~~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~~aa~l~~~~~  219 (262)
                      ++++||+|++.+...|.                     .+....|+|++|++++.+  .++++|+++++++++.++..+.
T Consensus        75 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~  154 (347)
T cd05278          75 RLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILP  154 (347)
T ss_pred             ccCCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhh
Confidence            99999999985322110                     011235899999999987  8999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-cc
Q 024775          220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FF  260 (262)
Q Consensus       220 tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V  260 (262)
                      |||+++...++++|++|+|.| +|++|++++|+||.+|. ++
T Consensus       155 ta~~~~~~~~~~~~~~VlI~g-~g~vg~~~iqlak~~g~~~v  195 (347)
T cd05278         155 TGFHGAELAGIKPGSTVAVIG-AGPVGLCAVAGARLLGAARI  195 (347)
T ss_pred             heeehhhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEE
Confidence            999999778899999999976 79999999999999996 54

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.93  E-value=2.6e-24  Score=199.19  Aligned_cols=169  Identities=24%  Similarity=0.277  Sum_probs=145.0

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      |||+++.++++   ++++ +.+.|.+ +++||+||+.+++||++|+..+.|.++.  .++|.++|||++|+|+++|+++.
T Consensus         1 m~a~~~~~~~~---~~~~-~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~   74 (386)
T cd08283           1 MKALVWHGKGD---VRVE-EVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG--MKKGDILGHEFMGVVEEVGPEVR   74 (386)
T ss_pred             CeeEEEecCCC---ceEE-eCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC--CCCCccccccceEEEEEeCCCCC
Confidence            78999986644   6777 8888888 4999999999999999999999887654  35678999999999999999999


Q ss_pred             CCCCCCEEEEecCcccc---------------------------------CC-----CCCCCceeeEEEecCC--CeEEC
Q 024775          163 EFKEGDEVYGDINEKAL---------------------------------EG-----PKQFGSLAEYTAVEER--LLAPK  202 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~---------------------------------~~-----~~~~G~~ae~~~v~~~--~~~~l  202 (262)
                      .+++||+|++.+...|.                                 .+     ....|++++|++++.+  .++++
T Consensus        75 ~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~l  154 (386)
T cd08283          75 NLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKI  154 (386)
T ss_pred             CCCCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEEC
Confidence            99999999886421100                                 00     0125899999999987  89999


Q ss_pred             CCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       203 P~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      |+++++++++.++..+.+||++++..++++|++|+|+| +|++|++++++|+.+|+.
T Consensus       155 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~g-~G~vG~~~~~la~~~g~~  210 (386)
T cd08283         155 PDDLSDEKALFLSDILPTGYHAAELAEVKPGDTVAVWG-CGPVGLFAARSAKLLGAE  210 (386)
T ss_pred             CCCCCHHHHhhhccchhhhHHHHhhccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999778899999999996 799999999999999974

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.93  E-value=3.5e-24  Score=192.98  Aligned_cols=174  Identities=30%  Similarity=0.419  Sum_probs=148.0

Q ss_pred             eeEEEEcccCCc--ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775           84 MKAWLYGEYGGV--DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        84 ~ka~v~~~~g~~--~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      ||+|++.+.+.+  +.+++. +.+.|.+.++||+||+.++++|++|++.+.|..+.  ..+|.++|||++|+|+++|+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~vG~~v   77 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLT-EVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP--PKLPLIPGHEIVGRVEAVGPGV   77 (329)
T ss_pred             CeEEEEecCCCCCCCCceEE-eccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC--CCCCccccccccEEEEEECCCC
Confidence            789999888842  346676 77778899999999999999999999998886543  3457899999999999999999


Q ss_pred             CCCCCCCEEEEecCc----c---------------ccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHH
Q 024775          162 KEFKEGDEVYGDINE----K---------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY  222 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~----~---------------~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~  222 (262)
                      .++++||+|++....    .               ...+....|+|++|+.++.+.++++|+++++.+++.+++.+.|||
T Consensus        78 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~  157 (329)
T cd08298          78 TRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGY  157 (329)
T ss_pred             CCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHH
Confidence            999999999863110    0               011222368999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++++.+++++|++|+|+| +|++|++++++|+.+|++|+
T Consensus       158 ~~~~~~~~~~~~~vlV~g-~g~vg~~~~~la~~~g~~v~  195 (329)
T cd08298         158 RALKLAGLKPGQRLGLYG-FGASAHLALQIARYQGAEVF  195 (329)
T ss_pred             HHHHhhCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEE
Confidence            999778999999999997 89999999999999999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.93  E-value=4e-24  Score=192.22  Aligned_cols=167  Identities=31%  Similarity=0.512  Sum_probs=151.5

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      .|+|++...+.++.+++. +.+.|.+.++||+|++.++++|+.|+..+.|..+.. ..+|.++|+|++|+|+.+|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~vG~~v~~   78 (331)
T cd08273           1 NREVVVTRRGGPEVLKVV-EADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQ-PPLPFTPGYDLVGRVDALGSGVTG   78 (331)
T ss_pred             CeeEEEccCCCcccEEEe-ccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCC-CCCCcccccceEEEEEEeCCCCcc
Confidence            489999999888778888 889999999999999999999999999888765432 346789999999999999999999


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCc
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGS  242 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~  242 (262)
                      |++||+|+++..         .|+|++|+.++.+.++++|+++++++++.++..+.+||+++.+ ..+++|++|+|+|++
T Consensus        79 ~~~Gd~V~~~~~---------~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~  149 (331)
T cd08273          79 FEVGDRVAALTR---------VGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGAS  149 (331)
T ss_pred             CCCCCEEEEeCC---------CcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCC
Confidence            999999999752         4899999999999999999999999999999999999999965 689999999999989


Q ss_pred             hHHHHHHHHHHHHcCCccC
Q 024775          243 GGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       243 G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++++++|+.+|++|+
T Consensus       150 g~ig~~~~~~a~~~g~~v~  168 (331)
T cd08273         150 GGVGQALLELALLAGAEVY  168 (331)
T ss_pred             cHHHHHHHHHHHHcCCEEE
Confidence            9999999999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.93  E-value=2.8e-24  Score=194.75  Aligned_cols=170  Identities=25%  Similarity=0.263  Sum_probs=141.7

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCC---------CCCCCCCCCCCccEEEEE
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK---------ATDSPLPTVPGYDVAGVV  154 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~---------~~~~~~p~~~G~e~vG~V  154 (262)
                      |||+++...    .++++ +.+.|++.++||+||+.++++|+.|++...|...         .....+|.++|+|++|+|
T Consensus         1 m~a~~~~~~----~~~~~-~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V   75 (341)
T cd08262           1 MRAAVFRDG----PLVVR-DVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEV   75 (341)
T ss_pred             CceEEEeCC----ceEEE-ecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEE
Confidence            789998765    37777 8899999999999999999999999998877321         011234788999999999


Q ss_pred             EEeCCCCCC-CCCCCEEEEecCccccCCC--------CCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775          155 VKVGTQVKE-FKEGDEVYGDINEKALEGP--------KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (262)
Q Consensus       155 v~vG~~v~~-~~~Gd~V~~~~~~~~~~~~--------~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al  225 (262)
                      +++|++++. |++||+|+++....|....        ...|+|++|+.++.+.++++|+++++++++ ++..+.+||+++
T Consensus        76 ~~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~~  154 (341)
T cd08262          76 VDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAV  154 (341)
T ss_pred             EEeCCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHHH
Confidence            999999987 9999999987432221111        136899999999999999999999998776 667888999998


Q ss_pred             HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775          226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF  260 (262)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V  260 (262)
                      ...++++|++|+|+| +|++|.+++|+|+.+|+++
T Consensus       155 ~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~  188 (341)
T cd08262         155 RRARLTPGEVALVIG-CGPIGLAVIAALKARGVGP  188 (341)
T ss_pred             HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcE
Confidence            778999999999997 6999999999999999873

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.92  E-value=5.6e-24  Score=194.51  Aligned_cols=167  Identities=23%  Similarity=0.245  Sum_probs=135.5

Q ss_pred             ccceeEEEEcccC----CcceEEEEee--ecCC-CCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCc--cEE
Q 024775           81 PSEMKAWLYGEYG----GVDVLKFDEK--VTVP-QVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGY--DVA  151 (262)
Q Consensus        81 p~~~ka~v~~~~g----~~~~l~~~~~--~~~p-~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~--e~v  151 (262)
                      +.++|.|++.++-    .++.|++++.  .+.| ++++|||||||.++++|+.|...+.+....  ..+|+++|+  |++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~--~~~p~~~G~~~~~~   83 (348)
T PLN03154          6 VVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDS--YLPPFVPGQRIEGF   83 (348)
T ss_pred             cccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCC--CCCCcCCCCeeEee
Confidence            4457889985543    2356888842  3555 357999999999999999998755432221  235789997  889


Q ss_pred             EEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCC--eEE--CCCCCCHh-hHhcccchHHHHHHHHH
Q 024775          152 GVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL--LAP--KPKNLDFV-QAAGLPLAIETAYEGLE  226 (262)
Q Consensus       152 G~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~--~~~--lP~~~~~~-~aa~l~~~~~tA~~al~  226 (262)
                      |+|+.+|++++.|++||+|++            .|+|+||++++...  +.+  +|++++++ +++.+++++.|||+++.
T Consensus        84 G~v~~vg~~v~~~~~Gd~V~~------------~~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~  151 (348)
T PLN03154         84 GVSKVVDSDDPNFKPGDLISG------------ITGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFY  151 (348)
T ss_pred             EEEEEEecCCCCCCCCCEEEe------------cCCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHH
Confidence            999999999999999999986            46899999998753  544  48999886 67888999999999995


Q ss_pred             -HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          227 -RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       227 -~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                       ..++++|++|||+|++|++|++++|+||.+|++|+
T Consensus       152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi  187 (348)
T PLN03154        152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVV  187 (348)
T ss_pred             HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence             57899999999999889999999999999999864

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=99.92  E-value=1.3e-24  Score=197.36  Aligned_cols=172  Identities=37%  Similarity=0.502  Sum_probs=147.3

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||++++.++ +..++++ +.+.|.++++||+|++.++++|++|+..+.+..   ....|.++|+|++|+|+.+|++++.
T Consensus         1 m~a~~~~~~~-~~~~~~~-~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~---~~~~~~~~g~e~~G~v~~vG~~v~~   75 (339)
T cd08249           1 QKAAVLTGPG-GGLLVVV-DVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF---IPSYPAILGCDFAGTVVEVGSGVTR   75 (339)
T ss_pred             CceEEeccCC-CCccccc-CCCCCCCCCCEEEEEEEEEEcCchheeeeeccc---ccCCCceeeeeeeEEEEEeCCCcCc
Confidence            7899999886 5557777 889999999999999999999999988765543   1234678999999999999999999


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCC----------CC
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGF----------SA  232 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~----------~~  232 (262)
                      +++||+|+++....+ .+....|+|++|++++.+.++++|+++++++++.+++.+.+||+++.+ .++          ++
T Consensus        76 ~~~Gd~V~~~~~~~~-~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~  154 (339)
T cd08249          76 FKVGDRVAGFVHGGN-PNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASK  154 (339)
T ss_pred             CCCCCEEEEEecccc-CCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCC
Confidence            999999998763211 122346899999999999999999999999999999999999999854 433          79


Q ss_pred             CCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          233 GKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|+|+|++|.+|++++++|+.+|++|+
T Consensus       155 ~~~vlI~ga~g~vg~~~~~~a~~~G~~v~  183 (339)
T cd08249         155 GKPVLIWGGSSSVGTLAIQLAKLAGYKVI  183 (339)
T ss_pred             CCEEEEEcChhHHHHHHHHHHHHcCCeEE
Confidence            99999999999999999999999999875

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=99.92  E-value=3.2e-24  Score=194.65  Aligned_cols=171  Identities=42%  Similarity=0.664  Sum_probs=146.9

Q ss_pred             eeEEEEcccCCc-ceEEEEeeecCCCCC-CCeEEEEEEEEecChhhHHhHcCCCCC-------------CCCCCCCCCCc
Q 024775           84 MKAWLYGEYGGV-DVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKA-------------TDSPLPTVPGY  148 (262)
Q Consensus        84 ~ka~v~~~~g~~-~~l~~~~~~~~p~~~-~~eVlVkV~a~~i~~sD~~~~~g~~~~-------------~~~~~p~~~G~  148 (262)
                      |||+++.+++++ +.++++ +.+.|.|. ++||+|||.++++|++|+....|....             ....+|.++||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~-~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~   79 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLE-NARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGR   79 (350)
T ss_pred             CceEEecccCCCcceeeec-ccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecc
Confidence            799999988875 346777 88999994 999999999999999999988774210             01345789999


Q ss_pred             cEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-
Q 024775          149 DVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-  227 (262)
Q Consensus       149 e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-  227 (262)
                      |++|+|+++|+++..+++||+|+++...      ...|+|++|+.++.+.++++|+++++++++.+++.+.++|+++.+ 
T Consensus        80 e~~G~v~~vG~~v~~~~~Gd~V~~~~~~------~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~  153 (350)
T cd08248          80 DCSGVVVDIGSGVKSFEIGDEVWGAVPP------WSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNV  153 (350)
T ss_pred             eeEEEEEecCCCcccCCCCCEEEEecCC------CCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHh
Confidence            9999999999999999999999986521      125899999999999999999999999999999999999999865 


Q ss_pred             cCCC----CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          228 TGFS----AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       228 ~~~~----~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ..+.    +|++|+|+|++|++|++++++|+.+|++|+
T Consensus       154 ~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~  191 (350)
T cd08248         154 GGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVT  191 (350)
T ss_pred             ccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCeEE
Confidence            5554    499999999999999999999999999875

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=99.92  E-value=4.9e-24  Score=189.98  Aligned_cols=170  Identities=29%  Similarity=0.400  Sum_probs=147.1

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||++++...+....+++. +.+.|.+.++||+||++++++|+.|+....+..+.  ...|.++|+|++|+|+++|.  ..
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~--~~   75 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLR-EIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPS--VKFPRVLGIEAVGEVEEAPG--GT   75 (320)
T ss_pred             CeEEEEcCCCCccceEEe-ecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC--CCCCccccceeEEEEEEecC--CC
Confidence            789999887776667777 77778899999999999999999999988876542  34568899999999999995  57


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCc
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGS  242 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~  242 (262)
                      +++||+|+++....   +....|+|++|+.++...++++|+++++++++.++.++.+||+++.. .++++|++|+|+|++
T Consensus        76 ~~~Gd~V~~~~~~~---~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~  152 (320)
T cd08243          76 FTPGQRVATAMGGM---GRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGT  152 (320)
T ss_pred             CCCCCEEEEecCCC---CCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            99999999875311   11235899999999999999999999999999999999999999965 579999999999999


Q ss_pred             hHHHHHHHHHHHHcCCccC
Q 024775          243 GGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       243 G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++++|+|+.+|++|+
T Consensus       153 g~~g~~~~~~a~~~g~~v~  171 (320)
T cd08243         153 SSVGLAALKLAKALGATVT  171 (320)
T ss_pred             ChHHHHHHHHHHHcCCEEE
Confidence            9999999999999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.92  E-value=7.9e-24  Score=191.76  Aligned_cols=170  Identities=27%  Similarity=0.387  Sum_probs=143.9

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||+|++++++.   ++++ +.+.|.+.+++|+||++++++|+.|+..+.+.++  +...|.++|+|++|+|+++|++++.
T Consensus         1 ~~~~~~~~~~~---~~~~-~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~--~~~~~~~~g~~~~G~V~~~G~~v~~   74 (343)
T cd08235           1 MKAAVLHGPND---VRLE-EVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHT--DLKPPRILGHEIAGEIVEVGDGVTG   74 (343)
T ss_pred             CeEEEEecCCc---eEEE-EccCCCCCCCeEEEEEEEeeeccccHHHHcCCCc--cCCCCcccccceEEEEEeeCCCCCC
Confidence            68999988764   7777 8888999999999999999999999998887653  1334678999999999999999999


Q ss_pred             CCCCCEEEEecCcccc-------------C-----CCCCCCceeeEEEecCCC-----eEECCCCCCHhhHhcccchHHH
Q 024775          164 FKEGDEVYGDINEKAL-------------E-----GPKQFGSLAEYTAVEERL-----LAPKPKNLDFVQAAGLPLAIET  220 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~-------------~-----~~~~~G~~ae~~~v~~~~-----~~~lP~~~~~~~aa~l~~~~~t  220 (262)
                      |++||+|+++.+..+.             .     +....|+|++|+.++.+.     ++++|+++++.+++.+ ..+.+
T Consensus        75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~~  153 (343)
T cd08235          75 FKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPLAC  153 (343)
T ss_pred             CCCCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-hHHHH
Confidence            9999999986421110             0     011358999999999988     9999999999998765 78889


Q ss_pred             HHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc-cC
Q 024775          221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF-FF  261 (262)
Q Consensus       221 A~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V~  261 (262)
                      ||+++...++++|++|+|+| +|++|++++|+|+.+|++ |+
T Consensus       154 a~~~l~~~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~  194 (343)
T cd08235         154 CINAQRKAGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVI  194 (343)
T ss_pred             HHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence            99999877899999999997 799999999999999998 53

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.92  E-value=6.2e-24  Score=193.51  Aligned_cols=171  Identities=20%  Similarity=0.270  Sum_probs=141.7

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCC-------CCCCCCCCCccEEEEEEE
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-------DSPLPTVPGYDVAGVVVK  156 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~-------~~~~p~~~G~e~vG~Vv~  156 (262)
                      |||+++.+++.   ++++ +.+.|++.++||+||+.++++|+.|++.+.|.....       ..++|.++|||++|+|++
T Consensus         1 mka~~~~~~~~---~~~~-~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~   76 (350)
T cd08256           1 MRAVVCHGPQD---YRLE-EVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVE   76 (350)
T ss_pred             CeeEEEecCCc---eEEE-ECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEE
Confidence            78999987765   7777 889999999999999999999999999887753110       014577899999999999


Q ss_pred             eCCCCC--CCCCCCEEEEecCcccc------CC------------C--CCCCceeeEEEecCC-CeEECCCCCCHhhHhc
Q 024775          157 VGTQVK--EFKEGDEVYGDINEKAL------EG------------P--KQFGSLAEYTAVEER-LLAPKPKNLDFVQAAG  213 (262)
Q Consensus       157 vG~~v~--~~~~Gd~V~~~~~~~~~------~~------------~--~~~G~~ae~~~v~~~-~~~~lP~~~~~~~aa~  213 (262)
                      +|++++  .|++||+|++.....|.      .+            .  ...|+|++|+.++++ .++++|+++++++++.
T Consensus        77 vG~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~  156 (350)
T cd08256          77 LGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAIL  156 (350)
T ss_pred             eCCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhh
Confidence            999999  89999999874221110      00            1  135899999999987 5789999999999988


Q ss_pred             ccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775          214 LPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF  260 (262)
Q Consensus       214 l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V  260 (262)
                      + ..+.++|++++..++++|++|+|.| +|++|++++++|+.+|+++
T Consensus       157 ~-~~~~ta~~a~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~  201 (350)
T cd08256         157 I-EPLACALHAVDRANIKFDDVVVLAG-AGPLGLGMIGAARLKNPKK  201 (350)
T ss_pred             h-hHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcE
Confidence            8 8889999999778999999999955 8999999999999999864

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=99.92  E-value=6.3e-24  Score=188.33  Aligned_cols=167  Identities=37%  Similarity=0.534  Sum_probs=149.1

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||++++.+.+.+..+++. +.+.|.+.+|||+||+.++++|+.|+....+.++. ...+|.++|||++|+|+++|+++..
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~vg~~~~~   78 (323)
T cd05276           1 MKAIVIKEPGGPEVLELG-EVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPP-PPGASDILGLEVAGVVVAVGPGVTG   78 (323)
T ss_pred             CeEEEEecCCCcccceEE-ecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCC-CCCCCCcccceeEEEEEeeCCCCCC
Confidence            799999998877678787 77777889999999999999999999988775532 2345789999999999999999999


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCc
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGS  242 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~  242 (262)
                      +++||+|+++..         .|+|++|+.++...++++|+++++.+++.++..+.++|+++.+ ..+.+|++|+|+|++
T Consensus        79 ~~~Gd~V~~~~~---------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~  149 (323)
T cd05276          79 WKVGDRVCALLA---------GGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGA  149 (323)
T ss_pred             CCCCCEEEEecC---------CCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCc
Confidence            999999998752         5899999999999999999999999999999999999999864 689999999999999


Q ss_pred             hHHHHHHHHHHHHcCCccC
Q 024775          243 GGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       243 G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++++++++.+|++|+
T Consensus       150 ~~ig~~~~~~~~~~g~~v~  168 (323)
T cd05276         150 SGVGTAAIQLAKALGARVI  168 (323)
T ss_pred             ChHHHHHHHHHHHcCCEEE
Confidence            9999999999999999864

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=99.92  E-value=8.7e-24  Score=189.69  Aligned_cols=171  Identities=27%  Similarity=0.334  Sum_probs=144.5

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||||+++++|.++.++++ +.+.|.++++||+|++.++++|+.|.....|.... ...+|.++|||++|+|++  +++..
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~V~~--~~~~~   76 (324)
T cd08288           1 FKALVLEKDDGGTSAELR-ELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGI-VRTFPLVPGIDLAGTVVE--SSSPR   76 (324)
T ss_pred             CeeEEEeccCCCcceEEE-ECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccc-cCCCCCccccceEEEEEe--CCCCC
Confidence            899999998877778888 88999999999999999999999999988775421 123567899999999998  67778


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH---HcCCC-CCCEEEEE
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE---RTGFS-AGKSILVL  239 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~---~~~~~-~g~~VlI~  239 (262)
                      +++||+|+++...   .+....|+|++|+.++.+.++++|+++++++++.++..+++++.++.   ..+.. +|++|+|+
T Consensus        77 ~~~Gd~V~~~~~~---~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~  153 (324)
T cd08288          77 FKPGDRVVLTGWG---VGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVT  153 (324)
T ss_pred             CCCCCEEEECCcc---CCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEE
Confidence            9999999985310   01112689999999999999999999999999999999989987764   45555 67899999


Q ss_pred             cCchHHHHHHHHHHHHcCCccC
Q 024775          240 NGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       240 Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++|++++|+|+.+|++|+
T Consensus       154 ga~g~vg~~~~~~A~~~G~~vi  175 (324)
T cd08288         154 GAAGGVGSVAVALLARLGYEVV  175 (324)
T ss_pred             CCCcHHHHHHHHHHHHCCCeEE
Confidence            9899999999999999999875

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.92  E-value=6.4e-24  Score=195.00  Aligned_cols=169  Identities=29%  Similarity=0.346  Sum_probs=143.8

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      +||+++.+.++.  ++++ +.+.|.++++||+|++.++++|+.|++.+.+..+   ..+|.++|||++|+|+++|++++.
T Consensus         1 ~~a~~~~~~~~~--~~~~-~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~---~~~~~i~g~e~~G~V~~vG~~v~~   74 (365)
T cd05279           1 CKAAVLWEKGKP--LSIE-EIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP---TPLPVILGHEGAGIVESIGPGVTT   74 (365)
T ss_pred             CceeEEecCCCC--cEEE-EeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC---CCCCcccccceeEEEEEeCCCccc
Confidence            467888877654  6676 8899999999999999999999999999888654   345689999999999999999999


Q ss_pred             CCCCCEEEEecCccc------cC---------------------------------CCCCCCceeeEEEecCCCeEECCC
Q 024775          164 FKEGDEVYGDINEKA------LE---------------------------------GPKQFGSLAEYTAVEERLLAPKPK  204 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~------~~---------------------------------~~~~~G~~ae~~~v~~~~~~~lP~  204 (262)
                      +++||+|++.....|      ..                                 +....|+|++|+.++++.++++|+
T Consensus        75 ~~~Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~  154 (365)
T cd05279          75 LKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDP  154 (365)
T ss_pred             CCCCCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCC
Confidence            999999998642110      00                                 011247899999999999999999


Q ss_pred             CCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          205 NLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       205 ~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      ++++++++.+..++.+||+++. .+++++|++|||+| +|++|++++|+|+.+|++
T Consensus       155 ~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~a~~~a~~~G~~  209 (365)
T cd05279         155 DAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSVIMGCKAAGAS  209 (365)
T ss_pred             CCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence            9999999999999999999875 57899999999996 799999999999999986

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.92  E-value=8.4e-24  Score=191.64  Aligned_cols=170  Identities=28%  Similarity=0.360  Sum_probs=144.2

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCC-CCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~-~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ||+|++..++.   ++++ +.++|++. ++||+|++.++++|+.|+....|.++   ..+|.++|+|++|+|+++|++++
T Consensus         1 ~~a~~~~~~~~---~~~~-~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~---~~~~~~~g~e~~G~V~~vG~~v~   73 (344)
T cd08284           1 MKAVVFKGPGD---VRVE-EVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP---STPGFVLGHEFVGEVVEVGPEVR   73 (344)
T ss_pred             CeeEEEecCCC---ceEE-eccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC---CCCCcccccceEEEEEeeCCCcc
Confidence            78999987643   7777 88999985 99999999999999999998887654   33467899999999999999999


Q ss_pred             CCCCCCEEEEecCcccc----------------------CCCCCCCceeeEEEecCC--CeEECCCCCCHhhHhcccchH
Q 024775          163 EFKEGDEVYGDINEKAL----------------------EGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAI  218 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~----------------------~~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~~aa~l~~~~  218 (262)
                      ++++||+|++.....|.                      ......|+|++|+.++.+  .++++|+++++++++.++.++
T Consensus        74 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~  153 (344)
T cd08284          74 TLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDIL  153 (344)
T ss_pred             ccCCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCch
Confidence            99999999986421110                      011125899999999864  999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          219 ETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       219 ~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      .|||+++...++++|++|+|+| +|++|++++|+|+.+|+ +|+
T Consensus       154 ~ta~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~g~~~v~  196 (344)
T cd08284         154 PTGYFGAKRAQVRPGDTVAVIG-CGPVGLCAVLSAQVLGAARVF  196 (344)
T ss_pred             HHHHhhhHhcCCccCCEEEEEC-CcHHHHHHHHHHHHcCCceEE
Confidence            9999999878899999999997 89999999999999996 554

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=99.92  E-value=8.2e-24  Score=190.02  Aligned_cols=171  Identities=29%  Similarity=0.357  Sum_probs=142.8

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||||++.+.++.+.++++ +.+.|.+.++||+||+.++++|++|.....+... ....+|.++|||++|+|+++|  +..
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~-~~~~~~~~~g~e~~G~V~~~~--~~~   76 (326)
T cd08289           1 FQALVVEKDEDDVSVSVK-NLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGK-IVKRYPFIPGIDLAGTVVESN--DPR   76 (326)
T ss_pred             CeeEEEeccCCcceeEEE-EccCCCCCCCeEEEEEEEEecChHHhhhhcCCcc-ccCCCCcCcccceeEEEEEcC--CCC
Confidence            799999999887778888 8899999999999999999999999876543211 113457899999999999964  567


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH---cCCC-CCCEEEEE
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER---TGFS-AGKSILVL  239 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~---~~~~-~g~~VlI~  239 (262)
                      |++||+|++....   .+....|+|++|+.++++.++++|+++++++++.+++.+.|||.++..   ..+. .+++|+|+
T Consensus        77 ~~~Gd~V~~~~~~---~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~  153 (326)
T cd08289          77 FKPGDEVIVTSYD---LGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVT  153 (326)
T ss_pred             CCCCCEEEEcccc---cCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEE
Confidence            9999999986531   112246999999999999999999999999999999999999998853   3334 57899999


Q ss_pred             cCchHHHHHHHHHHHHcCCccC
Q 024775          240 NGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       240 Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++|++++|+|+.+|++|+
T Consensus       154 g~~g~vg~~~~~~a~~~g~~v~  175 (326)
T cd08289         154 GATGGVGSLAVSILAKLGYEVV  175 (326)
T ss_pred             cCCchHHHHHHHHHHHCCCeEE
Confidence            9889999999999999999875

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.92  E-value=6.4e-24  Score=191.55  Aligned_cols=148  Identities=22%  Similarity=0.259  Sum_probs=126.6

Q ss_pred             CCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEE
Q 024775           93 GGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYG  172 (262)
Q Consensus        93 g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~  172 (262)
                      ..+++|+++ +.+.|+|++|||||||.|+++|+.|+.   |..+.  ...|.++|.|++|+|+++|+   .|++||+|++
T Consensus        14 ~~~~~l~~~-~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~--~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~   84 (325)
T TIGR02825        14 PTDSDFELK-TVELPPLNNGEVLLEALFLSVDPYMRV---AAKRL--KEGDTMMGQQVARVVESKNV---ALPKGTIVLA   84 (325)
T ss_pred             CCCCceEEE-eccCCCCCCCcEEEEEEEEecCHHHhc---ccCcC--CCCCcEecceEEEEEEeCCC---CCCCCCEEEE
Confidence            445778888 899999999999999999999997643   33221  23468999999999999874   5999999997


Q ss_pred             ecCccccCCCCCCCceeeEEEecCCCeEEC----CCCCCHhhH-hcccchHHHHHHHH-HHcCCCCCCEEEEEcCchHHH
Q 024775          173 DINEKALEGPKQFGSLAEYTAVEERLLAPK----PKNLDFVQA-AGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVG  246 (262)
Q Consensus       173 ~~~~~~~~~~~~~G~~ae~~~v~~~~~~~l----P~~~~~~~a-a~l~~~~~tA~~al-~~~~~~~g~~VlI~Ga~G~vG  246 (262)
                      +            ++|++|++++.+.+.++    |++++++++ +.+++++.|||+++ +..++++|++|||+|++|++|
T Consensus        85 ~------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG  152 (325)
T TIGR02825        85 S------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVG  152 (325)
T ss_pred             e------------cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHH
Confidence            3            46899999999888777    899999987 67889999999998 468899999999999999999


Q ss_pred             HHHHHHHHHcCCccC
Q 024775          247 SLVIQVCYYYLEFFF  261 (262)
Q Consensus       247 ~~aiqlAk~~Ga~V~  261 (262)
                      ++++|+||.+|++|+
T Consensus       153 ~~aiqlAk~~G~~Vi  167 (325)
T TIGR02825       153 SVVGQIAKLKGCKVV  167 (325)
T ss_pred             HHHHHHHHHcCCEEE
Confidence            999999999999875

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.92  E-value=9.5e-24  Score=193.55  Aligned_cols=170  Identities=28%  Similarity=0.345  Sum_probs=145.8

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||||++.+++..  +++. +.+.|.++++||+|++.++++|+.|+..+.|.++   ..+|.++|+|++|+|+++|+++..
T Consensus         1 m~a~~~~~~~~~--~~~~-~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~---~~~~~~~g~e~~G~V~~vG~~v~~   74 (363)
T cd08279           1 MRAAVLHEVGKP--LEIE-EVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP---APLPAVLGHEGAGVVEEVGPGVTG   74 (363)
T ss_pred             CeEEEEecCCCC--ceEE-EeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC---CCCCccccccceEEEEEeCCCccc
Confidence            799999988754  6666 8899999999999999999999999998888654   345779999999999999999999


Q ss_pred             CCCCCEEEEecCccc-------------cCC-------------------------CCCCCceeeEEEecCCCeEECCCC
Q 024775          164 FKEGDEVYGDINEKA-------------LEG-------------------------PKQFGSLAEYTAVEERLLAPKPKN  205 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~-------------~~~-------------------------~~~~G~~ae~~~v~~~~~~~lP~~  205 (262)
                      |++||+|++.....|             +..                         ....|+|++|+.++++.++++|++
T Consensus        75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~  154 (363)
T cd08279          75 VKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDD  154 (363)
T ss_pred             cCCCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCC
Confidence            999999998532111             000                         013589999999999999999999


Q ss_pred             CCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc-c
Q 024775          206 LDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF-F  260 (262)
Q Consensus       206 ~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V  260 (262)
                      +++++++.+++.+.+||.++. ..++++|++|+|+| +|++|++++++|+.+|++ |
T Consensus       155 ~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g-~g~vG~a~i~lak~~G~~~V  210 (363)
T cd08279         155 IPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIG-CGGVGLNAIQGARIAGASRI  210 (363)
T ss_pred             CChHHeehhcchhHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcE
Confidence            999999999999999999985 57899999999996 799999999999999996 5

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.92  E-value=8.4e-24  Score=192.02  Aligned_cols=171  Identities=23%  Similarity=0.306  Sum_probs=144.3

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ||++++.+++.   ++++ +.+.|++ .++||+||+.++++|+.|+..+.|.++.  ..+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~---~~~~-~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~~G~~v~   74 (345)
T cd08286           1 MKALVYHGPGK---ISWE-DRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPT--VTPGRILGHEGVGVVEEVGSAVT   74 (345)
T ss_pred             CceEEEecCCc---eeEE-ecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCC--CCCCceecccceEEEEEeccCcc
Confidence            78999988775   7776 8888886 7999999999999999999999887653  34478999999999999999999


Q ss_pred             CCCCCCEEEEecCcccc-------------------CCCCCCCceeeEEEecCC--CeEECCCCCCHhhHhcccchHHHH
Q 024775          163 EFKEGDEVYGDINEKAL-------------------EGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAIETA  221 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~-------------------~~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~~aa~l~~~~~tA  221 (262)
                      .+++||+|++.....+.                   .+....|+|++|+.++..  .++++|++++..+++.+++.+.+|
T Consensus        75 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta  154 (345)
T cd08286          75 NFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTG  154 (345)
T ss_pred             ccCCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHH
Confidence            99999999886421110                   011224899999999987  899999999999999999999999


Q ss_pred             HHHH-HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcC-CccC
Q 024775          222 YEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYL-EFFF  261 (262)
Q Consensus       222 ~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G-a~V~  261 (262)
                      |+++ ...++++|++|+|+| +|++|.+++|+||.+| .+|+
T Consensus       155 ~~~~~~~~~~~~g~~vlI~g-~g~~g~~~~~~a~~~G~~~v~  195 (345)
T cd08286         155 YECGVLNGKVKPGDTVAIVG-AGPVGLAALLTAQLYSPSKII  195 (345)
T ss_pred             HHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            9976 457899999999987 6999999999999999 5553

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.92  E-value=8.9e-24  Score=191.66  Aligned_cols=171  Identities=27%  Similarity=0.364  Sum_probs=145.6

Q ss_pred             eEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCC
Q 024775           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF  164 (262)
Q Consensus        85 ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~  164 (262)
                      |+|+.++.+  +.|+++ +.+.|.+.+|||+||+.++++|++|.+.+.|.+..  .++|.++|||++|+|+++|+++++|
T Consensus         1 ~~~~~~~~~--~~~~~~-~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~--~~~p~~~g~e~~G~V~~vG~~v~~~   75 (337)
T cd05283           1 KGYAARDAS--GKLEPF-TFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGP--TKYPLVPGHEIVGIVVAVGSKVTKF   75 (337)
T ss_pred             CceEEecCC--CCceEE-eccCCCCCCCeEEEEEEEecccchHHHHhcCCcCC--CCCCcccCcceeeEEEEECCCCccc
Confidence            567777776  347888 88999999999999999999999999999887632  4568899999999999999999999


Q ss_pred             CCCCEEEEec-Ccc---c----------c------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchH
Q 024775          165 KEGDEVYGDI-NEK---A----------L------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAI  218 (262)
Q Consensus       165 ~~Gd~V~~~~-~~~---~----------~------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~  218 (262)
                      ++||+|+..+ ...   |          +            .+....|+|++|+.++.+.++++|+++++++++.+.+.+
T Consensus        76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~  155 (337)
T cd05283          76 KVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAG  155 (337)
T ss_pred             CCCCEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHH
Confidence            9999997421 000   0          0            011336899999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          219 ETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       219 ~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+||+++++..+++|++|+|.| +|++|++++++|+.+|++++
T Consensus       156 ~ta~~~~~~~~~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~  197 (337)
T cd05283         156 ITVYSPLKRNGVGPGKRVGVVG-IGGLGHLAVKFAKALGAEVT  197 (337)
T ss_pred             HHHHHHHHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEE
Confidence            9999999888899999999977 89999999999999999764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.92  E-value=1.5e-23  Score=190.41  Aligned_cols=172  Identities=33%  Similarity=0.459  Sum_probs=146.4

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||||++.+++.+  +++. +.+.|.+.++||+||+.++++|+.|+....|..+.  ..+|.++|+|++|+|+.+|+++..
T Consensus         1 m~a~~~~~~~~~--~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~~~~~g~e~~G~V~~~G~~~~~   75 (345)
T cd08260           1 MRAAVYEEFGEP--LEIR-EVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPD--VTLPHVPGHEFAGVVVEVGEDVSR   75 (345)
T ss_pred             CeeEEEecCCCC--cEEE-EccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCC--CCCCeeeccceeEEEEEECCCCcc
Confidence            799999888764  6676 88889999999999999999999999998886543  355789999999999999999999


Q ss_pred             CCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCC--CeEECCCCCCHhhHhcccchHHHHHH
Q 024775          164 FKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAIETAYE  223 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~~aa~l~~~~~tA~~  223 (262)
                      |++||+|++.....|                  ..+....|+|++|+.++..  .++++|+++++++++.++..+.+||+
T Consensus        76 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~  155 (345)
T cd08260          76 WRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFR  155 (345)
T ss_pred             CCCCCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHH
Confidence            999999987211100                  0112236899999999974  89999999999999999999999999


Q ss_pred             HHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          224 GLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       224 al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++. ..++.+|++|+|+| +|++|++++|+|+.+|++|+
T Consensus       156 ~l~~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi  193 (345)
T cd08260         156 ALVHQARVKPGEWVAVHG-CGGVGLSAVMIASALGARVI  193 (345)
T ss_pred             HHHHccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence            985 57899999999999 89999999999999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=99.92  E-value=1.1e-23  Score=189.90  Aligned_cols=169  Identities=40%  Similarity=0.562  Sum_probs=147.0

Q ss_pred             eeEEEEcccCCcc---eEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775           84 MKAWLYGEYGGVD---VLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (262)
Q Consensus        84 ~ka~v~~~~g~~~---~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~  160 (262)
                      ||++++++++++.   .+.++ +.+.|++.++||+|++.++++|++|++.+.+..+.  .++|.++|||++|+|+++|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~g~e~~G~v~~~G~~   77 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDI-ELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPV--PGQPKILGWDASGVVEAVGSE   77 (336)
T ss_pred             CceEEecCCCCCCcccceeEc-cCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCC--CCCCcccccceEEEEEEcCCC
Confidence            6899999998765   46666 77888889999999999999999999988776542  345678999999999999999


Q ss_pred             CCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCC-----CC
Q 024775          161 VKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSA-----GK  234 (262)
Q Consensus       161 v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~-----g~  234 (262)
                      +..|++||+|+++..      ....|+|++|+.++...++++|+++++++++.+++.+.+||+++. ...+++     |+
T Consensus        78 v~~~~~Gd~V~~~~~------~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~  151 (336)
T cd08252          78 VTLFKVGDEVYYAGD------ITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGK  151 (336)
T ss_pred             CCCCCCCCEEEEcCC------CCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCC
Confidence            999999999998532      013589999999999999999999999999999999999999984 477777     99


Q ss_pred             EEEEEcCchHHHHHHHHHHHHcC-CccC
Q 024775          235 SILVLNGSGGVGSLVIQVCYYYL-EFFF  261 (262)
Q Consensus       235 ~VlI~Ga~G~vG~~aiqlAk~~G-a~V~  261 (262)
                      +|+|+|++|++|++++|+|+.+| ++|+
T Consensus       152 ~vlV~g~~g~vg~~~~~~a~~~G~~~v~  179 (336)
T cd08252         152 TLLIIGGAGGVGSIAIQLAKQLTGLTVI  179 (336)
T ss_pred             EEEEEcCCchHHHHHHHHHHHcCCcEEE
Confidence            99999999999999999999999 8764

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=99.92  E-value=1.5e-23  Score=188.26  Aligned_cols=170  Identities=30%  Similarity=0.385  Sum_probs=145.5

Q ss_pred             eEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCC
Q 024775           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF  164 (262)
Q Consensus        85 ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~  164 (262)
                      ||++++..+.+++++++ +.+.|.+.++||+||+.++++|+.|++.+.|..+.. ...|.++|||++|+|+.  .++..|
T Consensus         1 ~a~~~~~~~~~~~~~~~-~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~V~~--~~~~~~   76 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVE-TLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVV-RSYPMIPGIDAAGTVVS--SEDPRF   76 (323)
T ss_pred             CeEEEccCCCCcceeEe-ecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCC-CCCCccceeeeEEEEEe--cCCCCC
Confidence            68899888877788999 999999999999999999999999999988865321 34578899999999988  566789


Q ss_pred             CCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH---HcCCCCCC-EEEEEc
Q 024775          165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE---RTGFSAGK-SILVLN  240 (262)
Q Consensus       165 ~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~---~~~~~~g~-~VlI~G  240 (262)
                      ++||+|++....   .+....|++++|+.++.+.++++|+++++++++.++..+.+||.++.   +..+.+|+ +|+|+|
T Consensus        77 ~~Gd~V~~~~~~---~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g  153 (323)
T TIGR02823        77 REGDEVIVTGYG---LGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTG  153 (323)
T ss_pred             CCCCEEEEccCC---CCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEc
Confidence            999999986421   11223689999999999999999999999999999999999988874   34588998 999999


Q ss_pred             CchHHHHHHHHHHHHcCCccC
Q 024775          241 GSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       241 a~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++|.+|++++|+|+.+|++++
T Consensus       154 ~~g~vg~~~~~la~~~G~~vi  174 (323)
T TIGR02823       154 ATGGVGSLAVAILSKLGYEVV  174 (323)
T ss_pred             CCcHHHHHHHHHHHHcCCeEE
Confidence            889999999999999999864

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=99.92  E-value=1.5e-23  Score=188.90  Aligned_cols=174  Identities=32%  Similarity=0.431  Sum_probs=148.2

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||++++..++++. +.+. +.+.|.+.++||+|++.++++|+.|.....|.++. ..++|.++|+|++|+|+.+|++++.
T Consensus         1 ~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~-~~~~~~~~g~~~~G~v~~~G~~v~~   77 (338)
T cd08254           1 MKAWRFHKGSKGL-LVLE-EVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPT-LTKLPLTLGHEIAGTVVEVGAGVTN   77 (338)
T ss_pred             CeeEEEecCCCCc-eEEe-ccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcc-cCCCCEeccccccEEEEEECCCCcc
Confidence            7999999988875 6666 78889999999999999999999999998887652 2445678999999999999999999


Q ss_pred             CCCCCEEEEecCcc------------------ccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775          164 FKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~------------------~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al  225 (262)
                      +++||+|++.....                  ...+....|+|++|+.++...++++|+++++.+++.++..+.+||+++
T Consensus        78 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l  157 (338)
T cd08254          78 FKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAV  157 (338)
T ss_pred             CCCCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHH
Confidence            99999998721100                  011222358999999999999999999999999999999999999998


Q ss_pred             HH-cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          226 ER-TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       226 ~~-~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .. ..++++++|||.| +|++|++++++|+.+|++|+
T Consensus       158 ~~~~~~~~~~~vli~g-~g~vG~~~~~la~~~G~~V~  193 (338)
T cd08254         158 VRAGEVKPGETVLVIG-LGGLGLNAVQIAKAMGAAVI  193 (338)
T ss_pred             HhccCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEE
Confidence            65 5799999999976 79999999999999999865

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.92  E-value=1.3e-23  Score=192.88  Aligned_cols=169  Identities=34%  Similarity=0.484  Sum_probs=144.7

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||+|++..++..  ++++ +.++|.+.++||+|++.++++|++|+....+.++   ..+|.++|||++|+|+.+|+++.+
T Consensus         1 ~~a~~~~~~~~~--~~~~-~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~---~~~p~~~g~e~~G~v~~vG~~~~~   74 (367)
T cd08263           1 MKAAVLKGPNPP--LTIE-EIPVPRPKEGEILIRVAACGVCHSDLHVLKGELP---FPPPFVLGHEISGEVVEVGPNVEN   74 (367)
T ss_pred             CeeEEEecCCCC--cEEE-EeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCC---CCCCcccccccceEEEEeCCCCCC
Confidence            799999988643  6676 8899999999999999999999999998887664   356789999999999999999988


Q ss_pred             ---CCCCCEEEEecCccc-------------cCC---------------------------CCCCCceeeEEEecCCCeE
Q 024775          164 ---FKEGDEVYGDINEKA-------------LEG---------------------------PKQFGSLAEYTAVEERLLA  200 (262)
Q Consensus       164 ---~~~Gd~V~~~~~~~~-------------~~~---------------------------~~~~G~~ae~~~v~~~~~~  200 (262)
                         |++||+|++.....+             +.+                           ....|++++|+.++.+.++
T Consensus        75 ~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  154 (367)
T cd08263          75 PYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALA  154 (367)
T ss_pred             CCcCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEE
Confidence               999999998421100             000                           0125899999999999999


Q ss_pred             ECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          201 PKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       201 ~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      ++|+++++.+++.++..+.|||+++.. ..+++|++|+|+| +|++|++++++|+.+|++
T Consensus       155 ~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~lak~~G~~  213 (367)
T cd08263         155 PLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLAKAFGAS  213 (367)
T ss_pred             ECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999965 6779999999996 899999999999999987

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.92  E-value=1.5e-23  Score=186.84  Aligned_cols=172  Identities=44%  Similarity=0.674  Sum_probs=150.2

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||+|++.+.+.++.++++ +.+.|.+.++||+|++.++++|++|.....+.... ....|.++|+|++|+|+.+|+++..
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~~G~~~~~   78 (326)
T cd08272           1 MKALVLESFGGPEVFELR-EVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAA-RPPLPAILGCDVAGVVEAVGEGVTR   78 (326)
T ss_pred             CeEEEEccCCCchheEEe-ecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCC-CCCCCcccccceeEEEEEeCCCCCC
Confidence            799999999887778887 77778899999999999999999999988776432 2345788999999999999999999


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCc
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGS  242 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~  242 (262)
                      |++||+|+++....    ....|++++|+.++...++++|+++++.+++.+++.+.+||+++. ..++++|++++|+|++
T Consensus        79 ~~~Gd~V~~~~~~~----~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~  154 (326)
T cd08272          79 FRVGDEVYGCAGGL----GGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGA  154 (326)
T ss_pred             CCCCCEEEEccCCc----CCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCC
Confidence            99999999875211    012588999999999999999999999999999999999999984 5889999999999999


Q ss_pred             hHHHHHHHHHHHHcCCccC
Q 024775          243 GGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       243 G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++++++|+.+|++|+
T Consensus       155 ~~~g~~~~~~a~~~g~~v~  173 (326)
T cd08272         155 GGVGHVAVQLAKAAGARVY  173 (326)
T ss_pred             CcHHHHHHHHHHHcCCEEE
Confidence            9999999999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=99.92  E-value=1.4e-23  Score=190.28  Aligned_cols=169  Identities=27%  Similarity=0.385  Sum_probs=143.6

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||||++++.+.   ++++ +.+.|++.++||+||+.++++|+.|+..+.+...   ...|.++|+|++|+|+.+|++++.
T Consensus         1 ~~a~~~~~~~~---l~~~-~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~---~~~~~~~g~~~~G~V~~~g~~v~~   73 (343)
T cd08236           1 MKALVLTGPGD---LRYE-DIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA---YHPPLVLGHEFSGTVEEVGSGVDD   73 (343)
T ss_pred             CeeEEEecCCc---eeEE-ecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC---CCCCcccCcceEEEEEEECCCCCc
Confidence            79999998764   6776 8889999999999999999999999988877542   234678999999999999999999


Q ss_pred             CCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775          164 FKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al  225 (262)
                      |++||+|+++....+                  +.+....|+|++|+.++++.++++|+++++++++.+ ..+.+||+++
T Consensus        74 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l  152 (343)
T cd08236          74 LAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALHAV  152 (343)
T ss_pred             CCCCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-chHHHHHHHH
Confidence            999999998632110                  011124689999999999999999999999998877 5778999999


Q ss_pred             HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc-cC
Q 024775          226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF-FF  261 (262)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V~  261 (262)
                      ...++++|++|+|+| +|.+|++++|+|+.+|++ |+
T Consensus       153 ~~~~~~~~~~vlI~g-~g~~g~~~~~lA~~~G~~~v~  188 (343)
T cd08236         153 RLAGITLGDTVVVIG-AGTIGLLAIQWLKILGAKRVI  188 (343)
T ss_pred             HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            878899999999997 799999999999999987 53

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.91  E-value=2.4e-23  Score=188.50  Aligned_cols=169  Identities=28%  Similarity=0.358  Sum_probs=142.1

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||||+++.++.   ++++ +.+.|++.++||+|+|.++++|+.|+....+..+.  ..+|.++|+|++|+|+.+|++++.
T Consensus         1 ~~a~~~~~~~~---~~~~-~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~~~~~~g~e~~G~V~~~G~~v~~   74 (337)
T cd08261           1 MKALVCEKPGR---LEVV-DIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPF--ASYPRILGHELSGEVVEVGEGVAG   74 (337)
T ss_pred             CeEEEEeCCCc---eEEE-ECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCc--CCCCcccccccEEEEEEeCCCCCC
Confidence            78999987653   7777 88999999999999999999999999988876543  244678999999999999999999


Q ss_pred             CCCCCEEEEecCcc---ccC---------------CCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775          164 FKEGDEVYGDINEK---ALE---------------GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~---~~~---------------~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al  225 (262)
                      |++||+|++.....   |..               +....|+|++|+.++++ ++++|+++++++++.+ ..+.++++++
T Consensus        75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~  152 (337)
T cd08261          75 LKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV  152 (337)
T ss_pred             CCCCCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHHH
Confidence            99999999742110   000               01136899999999999 9999999999998876 5777899888


Q ss_pred             HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +..++++|++|||+| +|++|.+++|+|+.+|++|+
T Consensus       153 ~~~~l~~g~~vLI~g-~g~vG~~a~~lA~~~g~~v~  187 (337)
T cd08261         153 RRAGVTAGDTVLVVG-AGPIGLGVIQVAKARGARVI  187 (337)
T ss_pred             HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence            778899999999996 79999999999999999875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.91  E-value=1.4e-23  Score=191.09  Aligned_cols=173  Identities=27%  Similarity=0.307  Sum_probs=144.2

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC----------CCCCCCCCCCccEEEE
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA----------TDSPLPTVPGYDVAGV  153 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~----------~~~~~p~~~G~e~vG~  153 (262)
                      ||||++...+..  ++++ +.+.|++.++||+||+.++++|++|++.+.|.++.          ....+|.++|+|++|+
T Consensus         1 ~~a~~~~~~~~~--~~~~-~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~   77 (350)
T cd08240           1 MKAAAVVEPGKP--LEEV-EIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGE   77 (350)
T ss_pred             CeeEEeccCCCC--ceEE-ecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEE
Confidence            799998877654  6677 88999999999999999999999999998875431          0134467899999999


Q ss_pred             EEEeCCCCCCCCCCCEEEEecCcccc------C------------CCCCCCceeeEEEecCCCeEECCCCCCHhhHhccc
Q 024775          154 VVKVGTQVKEFKEGDEVYGDINEKAL------E------------GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLP  215 (262)
Q Consensus       154 Vv~vG~~v~~~~~Gd~V~~~~~~~~~------~------------~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~  215 (262)
                      |+++|+++.++++||+|+++....+.      .            +....|++++|+.++.+.++++|+++++.+++.++
T Consensus        78 V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~  157 (350)
T cd08240          78 VVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLA  157 (350)
T ss_pred             EEeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhh
Confidence            99999999999999999886321100      0            00136899999999999999999999999999999


Q ss_pred             chHHHHHHHHHHc-CCCCCCEEEEEcCchHHHHHHHHHHHHcCC-cc
Q 024775          216 LAIETAYEGLERT-GFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FF  260 (262)
Q Consensus       216 ~~~~tA~~al~~~-~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V  260 (262)
                      +.+.|||++++.. .+++|++|+|+| +|++|++++|+||.+|+ +|
T Consensus       158 ~~~~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~G~~~v  203 (350)
T cd08240         158 CSGLTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALLKALGPANI  203 (350)
T ss_pred             chhhhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeE
Confidence            9999999999764 456899999996 89999999999999999 44

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=2.1e-23  Score=187.35  Aligned_cols=164  Identities=26%  Similarity=0.311  Sum_probs=137.0

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||||++.+++.   ++++ +.+.|+++++||+||+.++++|++|.....|..+     +|.++|||++|+|+++|++   
T Consensus         1 ~~a~~~~~~~~---~~~~-~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~-----~~~~~G~e~~G~Vv~~G~~---   68 (319)
T cd08242           1 MKALVLDGGLD---LRVE-DLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP-----FPGVPGHEFVGIVEEGPEA---   68 (319)
T ss_pred             CeeEEEeCCCc---EEEE-ECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC-----CCCccCceEEEEEEEeCCC---
Confidence            78999987653   7888 8899999999999999999999999999887643     4678999999999999988   


Q ss_pred             CCCCCEEEEecCccc------------------cCCC-CCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          164 FKEGDEVYGDINEKA------------------LEGP-KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~------------------~~~~-~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      +++||+|.......+                  ..+. ...|+|++|+.++.+.++++|++++.++++.+ ..+.++|.+
T Consensus        69 ~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~  147 (319)
T cd08242          69 ELVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEI  147 (319)
T ss_pred             CCCCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHH
Confidence            679999986432110                  0111 23689999999999999999999999888764 445577877


Q ss_pred             HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++..++++|++|+|+| +|++|++++|+|+.+|++|+
T Consensus       148 ~~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi  183 (319)
T cd08242         148 LEQVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVV  183 (319)
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence            7778999999999997 89999999999999999864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=99.91  E-value=2.5e-23  Score=184.92  Aligned_cols=172  Identities=38%  Similarity=0.569  Sum_probs=150.7

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||++++...+.+..++++ +.+.|.+.++||+|++.++++|++|+....|..+.. ...|.++|||++|+|+++|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~g~~~~~   78 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLG-DLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGL-PPLPYVPGSDGAGVVEAVGEGVDG   78 (325)
T ss_pred             CceEEEcccCCcccceee-ecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCC-CCCCeecccceEEEEEeeCCCCCC
Confidence            688998887766667787 888899999999999999999999998887765432 456789999999999999999999


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCc
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGS  242 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~  242 (262)
                      |++||+|++.....    ....|++++|+.++...++++|+++++++++.+++.+.+||+++.. .++++|++|+|+|++
T Consensus        79 ~~~Gd~v~~~~~~~----~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~  154 (325)
T cd08253          79 LKVGDRVWLTNLGW----GRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGS  154 (325)
T ss_pred             CCCCCEEEEecccc----CCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCC
Confidence            99999999876311    0126899999999999999999999999999999999999999965 889999999999999


Q ss_pred             hHHHHHHHHHHHHcCCccC
Q 024775          243 GGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       243 G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++++++++.+|++|+
T Consensus       155 ~~~g~~~~~~a~~~g~~v~  173 (325)
T cd08253         155 GAVGHAAVQLARWAGARVI  173 (325)
T ss_pred             chHHHHHHHHHHHcCCEEE
Confidence            9999999999999999875

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=99.91  E-value=3.2e-23  Score=186.92  Aligned_cols=167  Identities=38%  Similarity=0.512  Sum_probs=142.7

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||+++.++++   +++. +.+.|++.++||+||++++++|+.|.....|..+.   .+|.++|+|++|+|+.+|+++++
T Consensus         1 ~~a~~~~~~~~---~~~~-~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~---~~p~~~g~~~~G~v~~vG~~v~~   73 (334)
T cd08234           1 MKALVYEGPGE---LEVE-EVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA---APPLVPGHEFAGVVVAVGSKVTG   73 (334)
T ss_pred             CeeEEecCCCc---eEEE-eccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC---CCCcccccceEEEEEEeCCCCCC
Confidence            78999988774   7777 88999999999999999999999999998887653   36789999999999999999999


Q ss_pred             CCCCCEEEEecCcccc------------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775          164 FKEGDEVYGDINEKAL------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~------------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al  225 (262)
                      +++||+|++.....+.                  .+....|++++|+.++.+.++++|+++++.+++.+ ..+.++++++
T Consensus        74 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l  152 (334)
T cd08234          74 FKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL  152 (334)
T ss_pred             CCCCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH
Confidence            9999999873221100                  00113689999999999999999999999888765 7778999998


Q ss_pred             HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      +.+++++|++|+|+| +|.+|.+++++||.+|++
T Consensus       153 ~~~~~~~g~~vlI~g-~g~vg~~~~~la~~~G~~  185 (334)
T cd08234         153 DLLGIKPGDSVLVFG-AGPIGLLLAQLLKLNGAS  185 (334)
T ss_pred             HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCc
Confidence            778999999999997 799999999999999987

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=6.7e-23  Score=184.07  Aligned_cols=175  Identities=34%  Similarity=0.418  Sum_probs=149.5

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||||+++..+..+.++++ +.+.|.+.++||+|++.++++|++|++...|..+.. .+.|.++|||++|+|+++|+++++
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~   78 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLV-EEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPP-VKDPLIPLSDGAGEVVAVGEGVTR   78 (336)
T ss_pred             CeEEEEeccCCCcceEEE-eccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCC-CCCCcccccceeEEEEEeCCCCcC
Confidence            899999988666668887 777788999999999999999999999888765432 346788999999999999999999


Q ss_pred             CCCCCEEEEecCccc------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCC
Q 024775          164 FKEGDEVYGDINEKA------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGF  230 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~  230 (262)
                      |++||+|++.....+            ..+....|++++|+.++.+.++++|+++++.+++.+++.+.+||+++.. ..+
T Consensus        79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~  158 (336)
T cd08276          79 FKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPL  158 (336)
T ss_pred             CCCCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCC
Confidence            999999998652111            1122236889999999999999999999999999999999999999864 789


Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++|++|+|+| +|++|++++++|+..|++|+
T Consensus       159 ~~g~~vli~g-~g~~g~~~~~~a~~~G~~v~  188 (336)
T cd08276         159 KPGDTVLVQG-TGGVSLFALQFAKAAGARVI  188 (336)
T ss_pred             CCCCEEEEEC-CcHHHHHHHHHHHHcCCEEE
Confidence            9999999996 89999999999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.91  E-value=6.2e-23  Score=183.26  Aligned_cols=169  Identities=41%  Similarity=0.557  Sum_probs=148.2

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||++++.+++..+.++++ +.+.|++.++||+||+.++++|+.|+....+....  ...|.++|||++|+|+.+|++++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~--~~~~~~~g~e~~G~v~~~G~~~~~   77 (325)
T cd08271           1 MKAWVLPKPGAALQLTLE-EIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA--WSYPHVPGVDGAGVVVAVGAKVTG   77 (325)
T ss_pred             CeeEEEccCCCcceeEEe-ccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC--CCCCcccccceEEEEEEeCCCCCc
Confidence            799999998853348888 88999999999999999999999999887765432  223678999999999999999999


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCc
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGS  242 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~  242 (262)
                      +++||+|+++...      ...|+|++|+.++.+.++++|+++++.+++.+.+.+.++|+++.+ .++++|++|+|+|++
T Consensus        78 ~~~Gd~V~~~~~~------~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~  151 (325)
T cd08271          78 WKVGDRVAYHASL------ARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGA  151 (325)
T ss_pred             CCCCCEEEeccCC------CCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCc
Confidence            9999999987521      125899999999999999999999999999999999999999965 789999999999988


Q ss_pred             hHHHHHHHHHHHHcCCccC
Q 024775          243 GGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       243 G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++++++|+..|++|+
T Consensus       152 ~~ig~~~~~~a~~~g~~v~  170 (325)
T cd08271         152 GGVGSFAVQLAKRAGLRVI  170 (325)
T ss_pred             cHHHHHHHHHHHHcCCEEE
Confidence            9999999999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=99.91  E-value=7.2e-23  Score=183.65  Aligned_cols=176  Identities=38%  Similarity=0.499  Sum_probs=148.6

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||++++...+....+++. +.+.|.+.+++|+|++.++++|++|++.+.|..+. ...+|.++|||++|+|+.+|++++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~~g~e~~G~v~~~G~~~~~   78 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYG-DLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGI-KLPLPHILGSDGAGVVEAVGPGVTN   78 (342)
T ss_pred             CeEEEEecCCCccceeEe-ecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCC-CCCCCeecccceEEEEEEeCCCCCC
Confidence            789998866666667777 77778899999999999999999999988875432 2345788999999999999999999


Q ss_pred             CCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775          164 FKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al  225 (262)
                      |++||+|++.....|                  ..+....|++++|+.++.+.++++|+++++++++.+++.+.+||+++
T Consensus        79 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l  158 (342)
T cd08266          79 VKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHML  158 (342)
T ss_pred             CCCCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHH
Confidence            999999998632111                  01112368899999999999999999999999999999999999998


Q ss_pred             H-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          226 E-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       226 ~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      . ..++++|++++|+|+.+++|++++++++..|++|+
T Consensus       159 ~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~  195 (342)
T cd08266         159 VTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVI  195 (342)
T ss_pred             HHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEE
Confidence            5 57899999999999989999999999999999874

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.91  E-value=5.8e-23  Score=184.30  Aligned_cols=172  Identities=30%  Similarity=0.420  Sum_probs=143.4

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||+|+.++.+ ...++++ +++.|.+.++||+||+.++++|+.|.+...+....  ...|.++|+|++|+|+.+|++++.
T Consensus         1 ~~~~~~~~~~-~~~~~~~-~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~--~~~p~~~G~e~~G~V~~vG~~v~~   76 (306)
T cd08258           1 MKALVKTGPG-PGNVELR-EVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDP--VETPVVLGHEFSGTIVEVGPDVEG   76 (306)
T ss_pred             CeeEEEecCC-CCceEEe-ecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCc--CCCCeeeccceEEEEEEECCCcCc
Confidence            6889987744 3458887 88999999999999999999999999888876421  334678999999999999999999


Q ss_pred             CCCCCEEEEecCcc-c------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          164 FKEGDEVYGDINEK-A------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~-~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      |++||+|++..... +                  ..+....|+|++|++++...++++|+++++++++ ++..+.++|++
T Consensus        77 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~  155 (306)
T cd08258          77 WKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVHA  155 (306)
T ss_pred             CCCCCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHHH
Confidence            99999999864200 0                  0011235899999999999999999999998886 77788899999


Q ss_pred             HH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          225 LE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       225 l~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +. ..++++|++|+|.| +|++|.+++|+|+.+|++|+
T Consensus       156 l~~~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~  192 (306)
T cd08258         156 VAERSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVV  192 (306)
T ss_pred             HHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence            85 47899999999976 89999999999999999874

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.91  E-value=6.7e-23  Score=185.95  Aligned_cols=168  Identities=23%  Similarity=0.271  Sum_probs=136.8

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ||+|++++++.   +++. +.+.|.+ +++||+||+.++++|++|+..+.|..+   ...|.++|||++|+|+++|+++.
T Consensus         1 m~~~~~~~~~~---~~~~-~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~---~~~~~~~g~e~~G~V~~vG~~v~   73 (345)
T cd08287           1 MRATVIHGPGD---IRVE-EVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSP---TRAPAPIGHEFVGVVEEVGSEVT   73 (345)
T ss_pred             CceeEEecCCc---eeEE-eCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCC---CCCCcccccceEEEEEEeCCCCC
Confidence            78999987665   6677 8899986 899999999999999999998887654   23478999999999999999999


Q ss_pred             CCCCCCEEEEecCcc------------------ccCCCCCCCceeeEEEecCC--CeEECCCCCCHhhHh-----cccch
Q 024775          163 EFKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAA-----GLPLA  217 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~------------------~~~~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~~aa-----~l~~~  217 (262)
                      ++++||+|++.....                  .+.+....|+|++|+.++..  .++++|++++++.+.     ++...
T Consensus        74 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~  153 (345)
T cd08287          74 SVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDV  153 (345)
T ss_pred             ccCCCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcH
Confidence            999999998732110                  01111235899999999964  899999999872211     22356


Q ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          218 IETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       218 ~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      +.+||+++..+.+++|++|+|.| +|++|++++|+||.+|++
T Consensus       154 ~~~a~~~~~~~~~~~g~~vlI~g-~g~vg~~~~~lak~~G~~  194 (345)
T cd08287         154 MGTGHHAAVSAGVRPGSTVVVVG-DGAVGLCAVLAAKRLGAE  194 (345)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence            88999998878899999999976 899999999999999986

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=99.90  E-value=8.9e-23  Score=182.70  Aligned_cols=161  Identities=28%  Similarity=0.380  Sum_probs=140.7

Q ss_pred             cccCCcc--eEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCC
Q 024775           90 GEYGGVD--VLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEG  167 (262)
Q Consensus        90 ~~~g~~~--~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~G  167 (262)
                      +.++.+.  .++++ +.+.|.+.++||+||+.++++|+.|...+.+..... ..+|.++|+|++|+|+.+|++++.+++|
T Consensus         4 ~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~~~G   81 (323)
T cd05282           4 TQFGEPLPLVLELV-SLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSR-PPLPAVPGNEGVGVVVEVGSGVSGLLVG   81 (323)
T ss_pred             CcCCCCccceEEeE-eCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCC-CCCCCcCCcceEEEEEEeCCCCCCCCCC
Confidence            4444443  57777 778888999999999999999999999887765432 3467899999999999999999999999


Q ss_pred             CEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCchHHH
Q 024775          168 DEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGSGGVG  246 (262)
Q Consensus       168 d~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~G~vG  246 (262)
                      |+|+++..         .|+|++|+.++...++++|+++++.+++.+++.+.+||+++.. ..+++|++|+|+|+.|++|
T Consensus        82 d~V~~~~~---------~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg  152 (323)
T cd05282          82 QRVLPLGG---------EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVG  152 (323)
T ss_pred             CEEEEeCC---------CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHH
Confidence            99999752         4899999999999999999999999999999999999999864 6789999999999899999


Q ss_pred             HHHHHHHHHcCCccC
Q 024775          247 SLVIQVCYYYLEFFF  261 (262)
Q Consensus       247 ~~aiqlAk~~Ga~V~  261 (262)
                      ++++++|+.+|++++
T Consensus       153 ~~~~~~a~~~g~~v~  167 (323)
T cd05282         153 RMLIQLAKLLGFKTI  167 (323)
T ss_pred             HHHHHHHHHCCCeEE
Confidence            999999999999874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=99.90  E-value=1.1e-22  Score=179.77  Aligned_cols=171  Identities=46%  Similarity=0.632  Sum_probs=147.7

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC-CCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~-~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ||+|++..++..+.+.++ +.+.|.+++|||+|++.++++|+.|+..+.|.... ....+|..+|||++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~   79 (309)
T cd05289           1 MKAVRIHEYGGPEVLELA-DVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVT   79 (309)
T ss_pred             CceEEEcccCCccceeec-ccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCC
Confidence            789999988877666676 66777899999999999999999999988775421 1134578899999999999999999


Q ss_pred             CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcC
Q 024775          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNG  241 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga  241 (262)
                      ++++||+|+++...      ...|+|++|+.++...++++|+++++..++.+++.+.++|+++.. ..+.+|++|+|+|+
T Consensus        80 ~~~~G~~V~~~~~~------~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~  153 (309)
T cd05289          80 GFKVGDEVFGMTPF------TRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGA  153 (309)
T ss_pred             CCCCCCEEEEccCC------CCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecC
Confidence            99999999987521      124899999999999999999999999999999999999999976 45999999999998


Q ss_pred             chHHHHHHHHHHHHcCCccC
Q 024775          242 SGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       242 ~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +|.+|++++++++..|++|+
T Consensus       154 ~g~~g~~~~~~a~~~g~~v~  173 (309)
T cd05289         154 AGGVGSFAVQLAKARGARVI  173 (309)
T ss_pred             CchHHHHHHHHHHHcCCEEE
Confidence            89999999999999999875

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.90  E-value=1.1e-22  Score=184.43  Aligned_cols=170  Identities=26%  Similarity=0.239  Sum_probs=136.2

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCC-CCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~-~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ||+|++.+.+.  .+++. +.+.|.+.++||+||++++++|++|++++.+... .....+|.++|||++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~--~~~~~-~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~   77 (341)
T PRK05396          1 MKALVKLKAEP--GLWLT-DVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVT   77 (341)
T ss_pred             CceEEEecCCC--ceEEE-ECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCC
Confidence            68999988773  47777 8899999999999999999999999998765321 11234567899999999999999999


Q ss_pred             CCCCCCEEEEecCcccc------------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          163 EFKEGDEVYGDINEKAL------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~------------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      .+++||+|++.....|.                  .+....|+|++|+.++.+.++++|+++++++++.+ ..+.+++++
T Consensus        78 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~~~~~~~~  156 (341)
T PRK05396         78 GFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DPFGNAVHT  156 (341)
T ss_pred             cCCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hHHHHHHHH
Confidence            99999999986322110                  01123689999999999999999999998888743 555666666


Q ss_pred             HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      +.. ..++|++|+|.| +|++|++++|+|+.+|++
T Consensus       157 ~~~-~~~~g~~vlV~~-~g~vg~~~~~la~~~G~~  189 (341)
T PRK05396        157 ALS-FDLVGEDVLITG-AGPIGIMAAAVAKHVGAR  189 (341)
T ss_pred             HHc-CCCCCCeEEEEC-CCHHHHHHHHHHHHcCCC
Confidence            543 346899999987 799999999999999984

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=99.90  E-value=1.9e-22  Score=183.80  Aligned_cols=169  Identities=34%  Similarity=0.450  Sum_probs=139.5

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCC-CCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQ-VKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~-~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      +|+|++.+++.+..++.. +.+.|. +.++||+||+.++++|++|+..+.+.... ....|.++|+|++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~V~~vG~~v~   78 (352)
T cd08247           1 YKALTFKNNTSPLTITTI-KLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFH-FKVKEKGLGRDYSGVIVKVGSNVA   78 (352)
T ss_pred             CceEEEecCCCcceeecc-CCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccc-cccCCCccCceeEEEEEEeCcccc
Confidence            478999999877555444 444443 38999999999999999999887543211 111367899999999999999998


Q ss_pred             -CCCCCCEEEEecCccccCCCCCCCceeeEEEecCC----CeEECCCCCCHhhHhcccchHHHHHHHHHHc--CCCCCCE
Q 024775          163 -EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEER----LLAPKPKNLDFVQAAGLPLAIETAYEGLERT--GFSAGKS  235 (262)
Q Consensus       163 -~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~----~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~--~~~~g~~  235 (262)
                       .|++||+|++.....+    ...|+|++|++++..    .++++|+++++.+++.+++++.|||+++...  ++++|++
T Consensus        79 ~~~~~Gd~V~~~~~~~~----~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~  154 (352)
T cd08247          79 SEWKVGDEVCGIYPHPY----GGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSK  154 (352)
T ss_pred             cCCCCCCEEEEeecCCC----CCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCe
Confidence             8999999998753211    136899999999987    7899999999999999999999999999765  6999999


Q ss_pred             EEEEcCchHHHHHHHHHHHHcCC
Q 024775          236 ILVLNGSGGVGSLVIQVCYYYLE  258 (262)
Q Consensus       236 VlI~Ga~G~vG~~aiqlAk~~Ga  258 (262)
                      |+|+|++|++|++++|+|+.+|+
T Consensus       155 vlI~ga~~~vg~~~~~~a~~~~~  177 (352)
T cd08247         155 VLVLGGSTSVGRFAIQLAKNHYN  177 (352)
T ss_pred             EEEECCCchHHHHHHHHHHhcCC
Confidence            99999999999999999999843

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.90  E-value=1.9e-22  Score=183.23  Aligned_cols=169  Identities=22%  Similarity=0.324  Sum_probs=136.1

Q ss_pred             EEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcC-CCCCCCCCCCCCCCccEEEEEEEeCCCCCCCC
Q 024775           87 WLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQG-KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFK  165 (262)
Q Consensus        87 ~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g-~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~  165 (262)
                      +++++.+.   ++++ +.+.|.+.++||+|+|.++++|+.|++.+.+ ..+.....+|.++|+|++|+|+++|+++.+|+
T Consensus         2 ~~~~~~~~---~~~~-~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~   77 (343)
T cd05285           2 AVLHGPGD---LRLE-ERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLK   77 (343)
T ss_pred             ceEecCCc---eeEE-ECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCC
Confidence            34555543   7777 8899999999999999999999999987643 22211123567899999999999999999999


Q ss_pred             CCCEEEEecCccc------------------c-CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH
Q 024775          166 EGDEVYGDINEKA------------------L-EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE  226 (262)
Q Consensus       166 ~Gd~V~~~~~~~~------------------~-~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~  226 (262)
                      +||+|++.....|                  + ......|+|++|++++++.++++|+++++++++.+ ..+.+||++++
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~~  156 (343)
T cd05285          78 VGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHACR  156 (343)
T ss_pred             CCCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHHH
Confidence            9999987322111                  0 11113689999999999999999999999998776 57789999987


Q ss_pred             HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc-cC
Q 024775          227 RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF-FF  261 (262)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V~  261 (262)
                      ..++++|++|+|+| +|++|++++|+||.+|++ |+
T Consensus       157 ~~~~~~g~~vlI~g-~g~vG~~a~~lak~~G~~~v~  191 (343)
T cd05285         157 RAGVRPGDTVLVFG-AGPIGLLTAAVAKAFGATKVV  191 (343)
T ss_pred             hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence            88999999999987 799999999999999987 53

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=99.90  E-value=1.4e-22  Score=182.62  Aligned_cols=171  Identities=32%  Similarity=0.382  Sum_probs=144.3

Q ss_pred             eEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCC
Q 024775           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF  164 (262)
Q Consensus        85 ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~  164 (262)
                      |++++.++|.  .++++ +.+.|.+.++||+|++.++++|+.|...+.+..+.  ..+|.++|+|++|+|+++|+++++|
T Consensus         1 ~~~~~~~~~~--~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~--~~~p~~~g~e~~G~v~~~g~~~~~~   75 (330)
T cd08245           1 KAAVVHAAGG--PLEPE-EVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGG--SKYPLVPGHEIVGEVVEVGAGVEGR   75 (330)
T ss_pred             CeEEEecCCC--CceEE-eccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCC--CCCCcccCccceEEEEEECCCCccc
Confidence            6788888853  27777 88889899999999999999999999998876532  3457899999999999999999999


Q ss_pred             CCCCEEEEec-----Ccc--c------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775          165 KEGDEVYGDI-----NEK--A------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (262)
Q Consensus       165 ~~Gd~V~~~~-----~~~--~------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al  225 (262)
                      ++||+|+...     +..  +            ..+....|+|++|+.++.+.++++|+++++.+++.+...+.+||+++
T Consensus        76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l  155 (330)
T cd08245          76 KVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSAL  155 (330)
T ss_pred             ccCCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHH
Confidence            9999998421     100  0            00112368999999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          226 ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       226 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +..++++|++|+|+| +|++|++++++|+.+|.+|+
T Consensus       156 ~~~~~~~~~~vlI~g-~g~iG~~~~~~a~~~G~~v~  190 (330)
T cd08245         156 RDAGPRPGERVAVLG-IGGLGHLAVQYARAMGFETV  190 (330)
T ss_pred             HhhCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            878899999999997 78899999999999999864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.90  E-value=2.8e-22  Score=178.62  Aligned_cols=172  Identities=35%  Similarity=0.518  Sum_probs=149.2

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||+|++...+.++.++++ +.+.|.+.+++|+|++.++++|+.|.....+..... ..+|..+|||++|+|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~   78 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIE-ELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEP-PPLPARLGYEAAGVVEAVGAGVTG   78 (328)
T ss_pred             CeEEEEeccCCcceeEEe-ecCCCCCCCCeEEEEEEEEecChHHhheeccccCCC-CCCCCCCCcceEEEEEeeCCCCCc
Confidence            789999887777668787 777788999999999999999999998877765432 344688999999999999999999


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCc
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGS  242 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~  242 (262)
                      |++||+|+++...    .....|++++|+.++.+.++++|+++++++++.+++.+.++|+++. ...+.++++++|+|++
T Consensus        79 ~~~Gd~V~~~~~~----~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~  154 (328)
T cd08268          79 FAVGDRVSVIPAA----DLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAAS  154 (328)
T ss_pred             CCCCCEEEecccc----ccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCc
Confidence            9999999987531    1123589999999999999999999999999999999999999986 4788999999999999


Q ss_pred             hHHHHHHHHHHHHcCCccC
Q 024775          243 GGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       243 G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++++++++..|++++
T Consensus       155 ~~~g~~~~~~~~~~g~~v~  173 (328)
T cd08268         155 SSVGLAAIQIANAAGATVI  173 (328)
T ss_pred             cHHHHHHHHHHHHcCCEEE
Confidence            9999999999999999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=99.90  E-value=3.9e-22  Score=177.46  Aligned_cols=167  Identities=37%  Similarity=0.543  Sum_probs=147.0

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||++.+...+....++++ +.+.+.+.++||+|++.+.++|+.|+....+.++.. ..+|.++|||++|+|+.+|+++.+
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~-~~~~~~~g~e~~G~v~~vg~~~~~   78 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLV-EVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPP-PGASDILGLEVAGEVVAVGEGVSR   78 (325)
T ss_pred             CceEEEccCCCcccceEE-eCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCC-CCCCCCccceeEEEEEEeCCCCCC
Confidence            688998887777667776 666677899999999999999999998887755422 335688999999999999999999


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCc
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGS  242 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~  242 (262)
                      +++||+|+++..         .|++++|+.++...++++|+++++.+++.++..+.++|+++. ...+++|++++|+|++
T Consensus        79 ~~~Gd~V~~~~~---------~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~  149 (325)
T TIGR02824        79 WKVGDRVCALVA---------GGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGA  149 (325)
T ss_pred             CCCCCEEEEccC---------CCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCc
Confidence            999999998652         489999999999999999999999999999999999999974 5789999999999999


Q ss_pred             hHHHHHHHHHHHHcCCccC
Q 024775          243 GGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       243 G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++++++++.+|++|+
T Consensus       150 ~~~g~~~~~~a~~~g~~v~  168 (325)
T TIGR02824       150 SGIGTTAIQLAKAFGARVF  168 (325)
T ss_pred             chHHHHHHHHHHHcCCEEE
Confidence            9999999999999999864

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=99.89  E-value=5.6e-22  Score=175.61  Aligned_cols=164  Identities=34%  Similarity=0.395  Sum_probs=144.4

Q ss_pred             eEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCC
Q 024775           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF  164 (262)
Q Consensus        85 ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~  164 (262)
                      |||.+...+....+++. +.+.+.+.++||+|+|.++++|+.|++...+..+.   .+|.++|||++|+|+.+|++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~---~~~~~~g~e~~G~v~~~g~~~~~~   76 (320)
T cd05286           1 KAVRIHKTGGPEVLEYE-DVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL---PLPFVLGVEGAGVVEAVGPGVTGF   76 (320)
T ss_pred             CeEEEecCCCccceEEe-ecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC---CCCccCCcceeEEEEEECCCCCCC
Confidence            57777777776667776 66667789999999999999999999988776542   346789999999999999999999


Q ss_pred             CCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCch
Q 024775          165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSG  243 (262)
Q Consensus       165 ~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G  243 (262)
                      ++||+|+++.         ..|++++|+.++.+.++++|+++++.+++.++..+.++|+++. ..++++|++|+|+|++|
T Consensus        77 ~~G~~V~~~~---------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g  147 (320)
T cd05286          77 KVGDRVAYAG---------PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAG  147 (320)
T ss_pred             CCCCEEEEec---------CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence            9999999864         1588999999999999999999999999999999999999985 47899999999999999


Q ss_pred             HHHHHHHHHHHHcCCccC
Q 024775          244 GVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       244 ~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++|++++++|+.+|++|+
T Consensus       148 ~~g~~~~~~a~~~g~~v~  165 (320)
T cd05286         148 GVGLLLTQWAKALGATVI  165 (320)
T ss_pred             hHHHHHHHHHHHcCCEEE
Confidence            999999999999999875

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.89  E-value=3.1e-22  Score=181.17  Aligned_cols=160  Identities=28%  Similarity=0.374  Sum_probs=130.6

Q ss_pred             EEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHc-CCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCc
Q 024775           98 LKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQ-GKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINE  176 (262)
Q Consensus        98 l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~-g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~  176 (262)
                      ++++ +.++|.+.++||+||+.++++|++|+...+ +........+|.++|+|++|+|+++|+++++|++||+|++....
T Consensus         9 ~~~~-~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~   87 (339)
T cd08232           9 LRVE-ERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSR   87 (339)
T ss_pred             eEEE-EcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEEccCC
Confidence            7777 889999999999999999999999988764 32222223456789999999999999999999999999874322


Q ss_pred             ccc------------------CC-----CCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCC
Q 024775          177 KAL------------------EG-----PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAG  233 (262)
Q Consensus       177 ~~~------------------~~-----~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g  233 (262)
                      .|.                  .+     ....|+|++|++++.+.++++|+++++++++. ..++.++|+++.+....+|
T Consensus        88 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~~~~~~~  166 (339)
T cd08232          88 PCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNRAGDLAG  166 (339)
T ss_pred             cCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHHHHhcCCCCC
Confidence            111                  00     01368999999999999999999999988865 5788899999976554499


Q ss_pred             CEEEEEcCchHHHHHHHHHHHHcCC-cc
Q 024775          234 KSILVLNGSGGVGSLVIQVCYYYLE-FF  260 (262)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V  260 (262)
                      ++|||.| +|++|++++|+|+.+|. ++
T Consensus       167 ~~VLI~g-~g~vG~~~~~lak~~G~~~v  193 (339)
T cd08232         167 KRVLVTG-AGPIGALVVAAARRAGAAEI  193 (339)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHcCCcEE
Confidence            9999977 79999999999999998 44

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.89  E-value=7.5e-22  Score=180.94  Aligned_cols=171  Identities=22%  Similarity=0.293  Sum_probs=135.0

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC-CCCCCCCCCCccEEEEEEEeCCC
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGTQ  160 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~-~~~~~p~~~G~e~vG~Vv~vG~~  160 (262)
                      .+|++|+. .++.   ++++ +.+.|.+.++||+||+.++++|++|++.+.+.... ....+|.++|||++|+|+++|++
T Consensus        17 ~~~~~~~~-~~~~---l~~~-~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   91 (364)
T PLN02702         17 ENMAAWLV-GVNT---LKIQ-PFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSE   91 (364)
T ss_pred             ccceEEEe-cCCc---eEEE-eccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCC
Confidence            34666666 3333   6666 77888899999999999999999999988763211 11235778999999999999999


Q ss_pred             CCCCCCCCEEEEecCccc-------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHH
Q 024775          161 VKEFKEGDEVYGDINEKA-------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA  221 (262)
Q Consensus       161 v~~~~~Gd~V~~~~~~~~-------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA  221 (262)
                      +..|++||+|++.....|                   +......|+|++|+.++...++++|+++++++++.. ..+.++
T Consensus        92 v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a  170 (364)
T PLN02702         92 VKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVG  170 (364)
T ss_pred             CCCCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHH
Confidence            999999999987422111                   101112689999999999999999999999888752 344458


Q ss_pred             HHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          222 YEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       222 ~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      |+++...++.+|++|+|+| +|++|++++|+|+.+|++
T Consensus       171 ~~~~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~  207 (364)
T PLN02702        171 VHACRRANIGPETNVLVMG-AGPIGLVTMLAARAFGAP  207 (364)
T ss_pred             HHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence            8888778899999999997 799999999999999986

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.89  E-value=4.8e-22  Score=177.12  Aligned_cols=151  Identities=25%  Similarity=0.259  Sum_probs=129.2

Q ss_pred             eEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhH-cCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecC
Q 024775           97 VLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRR-QGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDIN  175 (262)
Q Consensus        97 ~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~-~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~  175 (262)
                      .++++ +.+.|++.++||+|++.++++|+.|+..+ .|..+.....+|.++|+|++|+|+.+|++++++++||+|+++. 
T Consensus         6 ~~~~~-~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~-   83 (312)
T cd08269           6 RFEVE-EHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLS-   83 (312)
T ss_pred             eeEEE-ECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEec-
Confidence            47787 88999999999999999999999999887 6654322223478899999999999999999999999999865 


Q ss_pred             ccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHH
Q 024775          176 EKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYY  255 (262)
Q Consensus       176 ~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~  255 (262)
                               .|+|++|+.++++.++++|+++  ..++....++.++|++++..++++|++|+|+| +|++|.+++|+|+.
T Consensus        84 ---------~g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~la~~  151 (312)
T cd08269          84 ---------GGAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFRRGWIRAGKTVAVIG-AGFIGLLFLQLAAA  151 (312)
T ss_pred             ---------CCcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHH
Confidence                     5899999999999999999988  22222236778999999888899999999997 79999999999999


Q ss_pred             cCCc-cC
Q 024775          256 YLEF-FF  261 (262)
Q Consensus       256 ~Ga~-V~  261 (262)
                      +|++ |+
T Consensus       152 ~g~~~v~  158 (312)
T cd08269         152 AGARRVI  158 (312)
T ss_pred             cCCcEEE
Confidence            9998 54

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.89  E-value=5.6e-22  Score=176.66  Aligned_cols=167  Identities=41%  Similarity=0.622  Sum_probs=142.2

Q ss_pred             EEcccCCcceE--EEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCC-CCCCCCCCCccEEEEEEEeCCCCCCC
Q 024775           88 LYGEYGGVDVL--KFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT-DSPLPTVPGYDVAGVVVKVGTQVKEF  164 (262)
Q Consensus        88 v~~~~g~~~~l--~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~~~  164 (262)
                      +++..++++++  +++ +.+.|++.++||+|++.++++|+.|.+...|..+.. ....|..+|||++|+|+++|+++.++
T Consensus         2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~   80 (319)
T cd08267           2 VYTRYGSPEVLLLLEV-EVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRF   80 (319)
T ss_pred             eeCCCCChhhhhhccc-cCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCC
Confidence            45556665443  677 788899999999999999999999999887754211 12345789999999999999999999


Q ss_pred             CCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCch
Q 024775          165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGSG  243 (262)
Q Consensus       165 ~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~G  243 (262)
                      ++||+|++....      ...|+|++|+.++.+.++++|++++.++++.+++.+.+||+++.+ ..+++|++|+|+|++|
T Consensus        81 ~~Gd~V~~~~~~------~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g  154 (319)
T cd08267          81 KVGDEVFGRLPP------KGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASG  154 (319)
T ss_pred             CCCCEEEEeccC------CCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCc
Confidence            999999987521      125899999999999999999999999999999999999999976 4599999999999889


Q ss_pred             HHHHHHHHHHHHcCCccC
Q 024775          244 GVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       244 ~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++|++++++|+.+|++|+
T Consensus       155 ~~g~~~~~la~~~g~~v~  172 (319)
T cd08267         155 GVGTFAVQIAKALGAHVT  172 (319)
T ss_pred             HHHHHHHHHHHHcCCEEE
Confidence            999999999999999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08251 polyketide_synthase polyketide synthase

Probab=99.89  E-value=6e-22  Score=174.80  Aligned_cols=148  Identities=30%  Similarity=0.480  Sum_probs=133.9

Q ss_pred             CCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCC
Q 024775          106 VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQF  185 (262)
Q Consensus       106 ~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~  185 (262)
                      .|.+.++||+||+.++++|+.|+..+.+.++. ...+|.++|+|++|+|+++|+++.++++||+|+++..       ...
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-------~~~   73 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPT-MPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG-------ESM   73 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCC-CCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC-------CCC
Confidence            56789999999999999999999998886543 2356789999999999999999999999999998752       125


Q ss_pred             CceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       186 G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |+|++|+.++++.++++|+++++++++.++..+.+||++++...+++|++|+|++++|++|++++|+|+.+|++|+
T Consensus        74 g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~  149 (303)
T cd08251          74 GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIY  149 (303)
T ss_pred             cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHHhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEE
Confidence            8999999999999999999999999999999999999999888999999999999999999999999999999874

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=99.89  E-value=1.3e-21  Score=175.94  Aligned_cols=163  Identities=23%  Similarity=0.268  Sum_probs=135.8

Q ss_pred             eeEEEEcccC----CcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC-CCCCCCCCCCccEEEEEEEeC
Q 024775           84 MKAWLYGEYG----GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        84 ~ka~v~~~~g----~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~-~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      +|+|++...+    .++.++++ +.+.|.+.++||+||+.++++|+.|.....+.... .+...+.++|+|++|+|+++|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G   80 (329)
T cd05288           2 NRQVVLAKRPEGPPPPDDFELV-EVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESR   80 (329)
T ss_pred             CcEEEEeccCCCCCCccceeEE-eccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecC
Confidence            6888887765    45778888 88999999999999999999999887655543211 112234678999999999999


Q ss_pred             CCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecC-CCeEECCCCCC--HhhHhc-ccchHHHHHHHHHH-cCCCCC
Q 024775          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEE-RLLAPKPKNLD--FVQAAG-LPLAIETAYEGLER-TGFSAG  233 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~-~~~~~lP~~~~--~~~aa~-l~~~~~tA~~al~~-~~~~~g  233 (262)
                      .+  .|++||+|++            .++|++|+.++. +.++++|++++  +.+++. +++.+.+||+++.. ..+.+|
T Consensus        81 ~~--~~~~Gd~V~~------------~~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~  146 (329)
T cd05288          81 SP--DFKVGDLVSG------------FLGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPG  146 (329)
T ss_pred             CC--CCCCCCEEec------------ccceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCC
Confidence            64  7999999987            357999999999 99999999984  555555 88899999999865 678999


Q ss_pred             CEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          234 KSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++|+|+|++|++|++++|+|+.+|++|+
T Consensus       147 ~~vlI~g~~g~ig~~~~~~a~~~G~~vi  174 (329)
T cd05288         147 ETVVVSAAAGAVGSVVGQIAKLLGARVV  174 (329)
T ss_pred             CEEEEecCcchHHHHHHHHHHHcCCEEE
Confidence            9999999999999999999999999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.88  E-value=7.5e-22  Score=180.05  Aligned_cols=167  Identities=41%  Similarity=0.568  Sum_probs=135.2

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCC--CCCCCCCCccEEEE---EEE
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATD--SPLPTVPGYDVAGV---VVK  156 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~--~~~p~~~G~e~vG~---Vv~  156 (262)
                      ++++.+.+........+.+.++.++|.++++|++|++.++++|+.|+.++.|......  ..+|.+++.++.|+   +..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~   82 (347)
T KOG1198|consen    3 KKIRRVSLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVES   82 (347)
T ss_pred             cccceEEEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEec
Confidence            3455555555554444555568999999999999999999999999999998765432  36775555555554   445


Q ss_pred             eC-CCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-c------
Q 024775          157 VG-TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-T------  228 (262)
Q Consensus       157 vG-~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~------  228 (262)
                      +| ..+..+..||.+....         ..|+|+||+++|+..++++|+.+++++++.++.++.|||.++.. .      
T Consensus        83 ~g~~~~~~~~~g~~~~~~~---------~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~  153 (347)
T KOG1198|consen   83 VGDDVVGGWVHGDAVVAFL---------SSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSK  153 (347)
T ss_pred             cccccccceEeeeEEeecc---------CCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhcccccccc
Confidence            55 3445577777666654         37999999999999999999999999999999999999999965 6      


Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHHcC
Q 024775          229 GFSAGKSILVLNGSGGVGSLVIQVCYYYL  257 (262)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G  257 (262)
                      ++++|+.|||+||+|+||++++|+||++|
T Consensus       154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~  182 (347)
T KOG1198|consen  154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG  182 (347)
T ss_pred             ccCCCCeEEEEeCCcHHHHHHHHHHHhcC
Confidence            69999999999999999999999999999

>cd05281 TDH Threonine dehydrogenase

Probab=99.88  E-value=1.3e-21  Score=177.61  Aligned_cols=171  Identities=28%  Similarity=0.289  Sum_probs=137.0

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCC-CCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~-~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ||+|+++.++.  .+++. +.+.|.+.++||+||+.++++|+.|+..+.+... .....+|.++|+|++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~--~~~~~-~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~   77 (341)
T cd05281           1 MKAIVKTKAGP--GAELV-EVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVT   77 (341)
T ss_pred             CcceEEecCCC--ceEEE-eCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCC
Confidence            78999998775  37777 8889999999999999999999999987654321 11133467899999999999999999


Q ss_pred             CCCCCCEEEEecCcccc------------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          163 EFKEGDEVYGDINEKAL------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~------------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      .+++||+|+++....|.                  .+....|+|++|++++.+.++++|++++.+. +.++..+.++|++
T Consensus        78 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~-a~~~~~~~~a~~~  156 (341)
T cd05281          78 RVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEI-ASIQEPLGNAVHT  156 (341)
T ss_pred             CCCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHH-hhhhhHHHHHHHH
Confidence            99999999986221110                  0011358999999999999999999998854 4567777888888


Q ss_pred             HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-cc
Q 024775          225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FF  260 (262)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V  260 (262)
                      +. ...++|++|+|+| +|++|++++|+|+.+|+ +|
T Consensus       157 ~~-~~~~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v  191 (341)
T cd05281         157 VL-AGDVSGKSVLITG-CGPIGLMAIAVAKAAGASLV  191 (341)
T ss_pred             HH-hcCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEE
Confidence            75 4567999999987 79999999999999998 45

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.88  E-value=2.2e-21  Score=179.42  Aligned_cols=173  Identities=28%  Similarity=0.362  Sum_probs=135.3

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCC-----CCCCCCCCCCCccEEEEEEE
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-----ATDSPLPTVPGYDVAGVVVK  156 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~-----~~~~~~p~~~G~e~vG~Vv~  156 (262)
                      +.+...++... +   ++++ +.+.|+++++||+||+.++++|++|++.+.+...     ....++|.++|||++|+|++
T Consensus        27 ~~~~~~~~~~~-~---~~~~-~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~  101 (384)
T cd08265          27 TNLGSKVWRYP-E---LRVE-DVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEK  101 (384)
T ss_pred             ccceeEEEeCC-C---EEEE-ECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEE
Confidence            33555555532 2   7777 8899999999999999999999999988763210     01134678999999999999


Q ss_pred             eCCCCCCCCCCCEEEEecCccc------cC------------CCCCCCceeeEEEecCCCeEECCCCC-------CHhhH
Q 024775          157 VGTQVKEFKEGDEVYGDINEKA------LE------------GPKQFGSLAEYTAVEERLLAPKPKNL-------DFVQA  211 (262)
Q Consensus       157 vG~~v~~~~~Gd~V~~~~~~~~------~~------------~~~~~G~~ae~~~v~~~~~~~lP~~~-------~~~~a  211 (262)
                      +|+++..|++||+|++.....|      ..            +....|+|++|+.+++..++++|+.+       +.+ +
T Consensus       102 vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~  180 (384)
T cd08265         102 TGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-A  180 (384)
T ss_pred             ECCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH-H
Confidence            9999999999999986321111      10            11236899999999999999999863       444 5


Q ss_pred             hcccchHHHHHHHHH-H-cCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          212 AGLPLAIETAYEGLE-R-TGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       212 a~l~~~~~tA~~al~-~-~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      +.++.++.+||+++. . .++++|++|+|+| +|++|++++|+|+.+|+ +|+
T Consensus       181 a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g-~g~vG~~ai~lA~~~G~~~vi  232 (384)
T cd08265         181 GALVEPTSVAYNGLFIRGGGFRPGAYVVVYG-AGPIGLAAIALAKAAGASKVI  232 (384)
T ss_pred             hhhhhHHHHHHHHHHhhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            667778899999994 4 6899999999996 79999999999999998 453

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.88  E-value=3.1e-21  Score=173.15  Aligned_cols=161  Identities=37%  Similarity=0.576  Sum_probs=141.3

Q ss_pred             eEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCC
Q 024775           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF  164 (262)
Q Consensus        85 ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~  164 (262)
                      |++++...+....++++ +.+.|.+.++||+|++.++++|+.|.....|.++.. ...|..+|+|++|+|+.+|+++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~   78 (337)
T cd08275           1 RAVVLTGFGGLDKLKVE-KEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSA-PKPPFVPGFECAGTVEAVGEGVKDF   78 (337)
T ss_pred             CeEEEcCCCCccceEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCC-CCCCCCCcceeEEEEEEECCCCcCC
Confidence            56777777766567777 667778899999999999999999999887765322 3456789999999999999999999


Q ss_pred             CCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCch
Q 024775          165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSG  243 (262)
Q Consensus       165 ~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G  243 (262)
                      ++||+|+++..         .|+|++|+.++.+.++++|+++++.+++.+++.+.++|+++. ..++++|++|+|+|++|
T Consensus        79 ~~G~~V~~~~~---------~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g  149 (337)
T cd08275          79 KVGDRVMGLTR---------FGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAG  149 (337)
T ss_pred             CCCCEEEEecC---------CCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcc
Confidence            99999999752         589999999999999999999999999999999999999985 57899999999999889


Q ss_pred             HHHHHHHHHHHHc
Q 024775          244 GVGSLVIQVCYYY  256 (262)
Q Consensus       244 ~vG~~aiqlAk~~  256 (262)
                      ++|++++++|+.+
T Consensus       150 ~~g~~~~~~a~~~  162 (337)
T cd08275         150 GVGLAAGQLCKTV  162 (337)
T ss_pred             hHHHHHHHHHHHc
Confidence            9999999999998

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.87  E-value=5.5e-21  Score=166.02  Aligned_cols=147  Identities=36%  Similarity=0.463  Sum_probs=126.4

Q ss_pred             eEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCcc--------------c
Q 024775          113 QVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEK--------------A  178 (262)
Q Consensus       113 eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~--------------~  178 (262)
                      ||+|+|.++++|+.|+..+.|..+ ....+|.++|+|++|+|+++|+++..|++||+|++.....              .
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~   79 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYP-PPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGG   79 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCC-cCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCC
Confidence            689999999999999999988654 1244578999999999999999999999999999875321              1


Q ss_pred             cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHc-CCCCCCEEEEEcCchHHHHHHHHHHHHcC
Q 024775          179 LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERT-GFSAGKSILVLNGSGGVGSLVIQVCYYYL  257 (262)
Q Consensus       179 ~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~-~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G  257 (262)
                      ..+....|+|++|+.++.+.++++|+++++++++.++..+.+||+++... .+++|++|+|+|+.+ +|++++++++..|
T Consensus        80 ~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g  158 (271)
T cd05188          80 ILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAG  158 (271)
T ss_pred             EeccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcC
Confidence            12223468999999999999999999999999999999999999999764 459999999999666 9999999999999


Q ss_pred             CccC
Q 024775          258 EFFF  261 (262)
Q Consensus       258 a~V~  261 (262)
                      .+|+
T Consensus       159 ~~v~  162 (271)
T cd05188         159 ARVI  162 (271)
T ss_pred             CeEE
Confidence            8874

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=99.87  E-value=1.3e-20  Score=167.19  Aligned_cols=166  Identities=39%  Similarity=0.546  Sum_probs=143.1

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCC-CCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~-~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ||++++...+....+++. +.+ |.+. ++||+|++.++++|+.|+..+.|..... ...|..+|+|++|+|+.+|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~-~~~~~~~g~e~~G~v~~~g~~~~   77 (323)
T cd08241           1 MKAVVCKELGGPEDLVLE-EVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVK-PPLPFVPGSEVAGVVEAVGEGVT   77 (323)
T ss_pred             CeEEEEecCCCcceeEEe-cCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCC-CCCCCcccceeEEEEEEeCCCCC
Confidence            689998877766567776 556 6665 5999999999999999999887755321 23466899999999999999999


Q ss_pred             CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcC
Q 024775          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNG  241 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga  241 (262)
                      .+++||+|+++..         .|++++|+.++.+.++++|++++..+++.+...+.+||+++. ...+++|++|+|+|+
T Consensus        78 ~~~~G~~V~~~~~---------~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~  148 (323)
T cd08241          78 GFKVGDRVVALTG---------QGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGA  148 (323)
T ss_pred             CCCCCCEEEEecC---------CceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            9999999999751         488999999999999999999999888888999999999986 578999999999998


Q ss_pred             chHHHHHHHHHHHHcCCccC
Q 024775          242 SGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       242 ~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|++|++++++|+.+|++|+
T Consensus       149 ~~~~g~~~~~~a~~~g~~v~  168 (323)
T cd08241         149 AGGVGLAAVQLAKALGARVI  168 (323)
T ss_pred             CchHHHHHHHHHHHhCCEEE
Confidence            89999999999999999875

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.87  E-value=6.3e-21  Score=173.06  Aligned_cols=165  Identities=27%  Similarity=0.308  Sum_probs=131.1

Q ss_pred             ccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCC-CCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCE
Q 024775           91 EYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDE  169 (262)
Q Consensus        91 ~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~-~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~  169 (262)
                      +++..  ++++ +.+.|.+.++||+||+.++++|+.|+..+.+... ....++|.++|+|++|+|+++|+++.+|++||+
T Consensus         6 ~~~~~--~~l~-~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~   82 (340)
T TIGR00692         6 KPGYG--AELT-EVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDY   82 (340)
T ss_pred             cCCCC--cEEE-ECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCE
Confidence            44443  6676 8899999999999999999999999988765421 111345678999999999999999999999999


Q ss_pred             EEEecCcccc------C------------CCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCC
Q 024775          170 VYGDINEKAL------E------------GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFS  231 (262)
Q Consensus       170 V~~~~~~~~~------~------------~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~  231 (262)
                      |++.....|.      .            +....|+|++|++++++.++++|++++++++ .++..+.++|+++ ....+
T Consensus        83 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~-~~~~~  160 (340)
T TIGR00692        83 VSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTV-LAGPI  160 (340)
T ss_pred             EEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHH-HccCC
Confidence            9884321110      0            0113689999999999999999999998654 5677888999886 44578


Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCc-cC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEF-FF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V~  261 (262)
                      +|++|+|.| +|++|.+++|+|+.+|++ |+
T Consensus       161 ~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~  190 (340)
T TIGR00692       161 SGKSVLVTG-AGPIGLMAIAVAKASGAYPVI  190 (340)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence            999999976 799999999999999986 53

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.84  E-value=4.9e-20  Score=160.73  Aligned_cols=136  Identities=35%  Similarity=0.462  Sum_probs=124.2

Q ss_pred             CeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeE
Q 024775          112 DQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEY  191 (262)
Q Consensus       112 ~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~  191 (262)
                      +||+||+.++++|++|++...|..+    .+|.++|+|++|+|+++|+++..+++||+|+++.          .|+|++|
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~----~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~----------~g~~~~~   66 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP----GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA----------PGAFATH   66 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC----CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe----------cCcccce
Confidence            5899999999999999999887642    3467899999999999999999999999999875          4899999


Q ss_pred             EEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          192 TAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       192 ~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +.++.+.++++|+++++.+++.+++.+.++|.++.. ..+++|++|+|+|+.|++|++++|+|+.+|++|+
T Consensus        67 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~  137 (293)
T cd05195          67 VRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVF  137 (293)
T ss_pred             EEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEE
Confidence            999999999999999999999999999999999854 7899999999999999999999999999999864

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>smart00829 PKS_ER Enoylreductase

Probab=99.82  E-value=3.5e-19  Score=155.34  Aligned_cols=131  Identities=36%  Similarity=0.492  Sum_probs=120.2

Q ss_pred             EEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEec
Q 024775          116 IKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVE  195 (262)
Q Consensus       116 VkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~  195 (262)
                      ||+.++++|+.|++...|.++     .|.++|+|++|+|+++|+++..|++||+|+++.          .|+|++|+.++
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~-----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~----------~g~~~~~~~~~   66 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP-----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA----------PGSFATYVRTD   66 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC-----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc----------CCceeeEEEcc
Confidence            789999999999999887643     257899999999999999999999999999975          48999999999


Q ss_pred             CCCeEECCCCCCHhhHhcccchHHHHHHHH-HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          196 ERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       196 ~~~~~~lP~~~~~~~aa~l~~~~~tA~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+.++++|+++++.+++.+++.+.++|+++ +...+++|++|+|+|++|++|++++++|+.+|++|+
T Consensus        67 ~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~  133 (288)
T smart00829       67 ARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVF  133 (288)
T ss_pred             HHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEE
Confidence            999999999999999999999999999998 457899999999999999999999999999999874

Enoylreductase in Polyketide synthases.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.81  E-value=1.9e-19  Score=159.66  Aligned_cols=114  Identities=23%  Similarity=0.224  Sum_probs=97.9

Q ss_pred             CCCccEEEEEEEeCCCCC------CCCCCCEEEEecCccc------c------------CC-------CCCCCceeeEEE
Q 024775          145 VPGYDVAGVVVKVGTQVK------EFKEGDEVYGDINEKA------L------------EG-------PKQFGSLAEYTA  193 (262)
Q Consensus       145 ~~G~e~vG~Vv~vG~~v~------~~~~Gd~V~~~~~~~~------~------------~~-------~~~~G~~ae~~~  193 (262)
                      ++|||++|+|+++|++|+      .|++||||+......|      .            .+       ....|+|+||++
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~   80 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH   80 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence            589999999999999999      8999999976432111      0            00       113599999999


Q ss_pred             ecCC-CeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          194 VEER-LLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       194 v~~~-~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      +++. .++++|+++++++++.+.+.+.|+|+++++....+|++|+|+| +|++|++++|+||.+|++
T Consensus        81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G-~G~vG~~~~~~ak~~G~~  146 (280)
T TIGR03366        81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEAAGDLKGRRVLVVG-AGMLGLTAAAAAAAAGAA  146 (280)
T ss_pred             ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHhccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence            9997 6999999999999999899999999999887778999999998 699999999999999997

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.80  E-value=1.6e-18  Score=151.77  Aligned_cols=150  Identities=25%  Similarity=0.265  Sum_probs=119.1

Q ss_pred             ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC--CCCCCCCCCCEEEEe
Q 024775           96 DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG--TQVKEFKEGDEVYGD  173 (262)
Q Consensus        96 ~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG--~~v~~~~~Gd~V~~~  173 (262)
                      +.++++ +.++|+|++||||||+.|.+++|..+..++... .  --.|+-+|-..+|.++...  +...+|++||.|...
T Consensus        25 d~F~le-e~~vp~p~~GqvLl~~~ylS~DPymRgrm~d~~-S--Y~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~  100 (340)
T COG2130          25 DDFRLE-EVDVPEPGEGQVLLRTLYLSLDPYMRGRMSDAP-S--YAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV  100 (340)
T ss_pred             CCceeE-eccCCCCCcCceEEEEEEeccCHHHeecccCCc-c--cCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec
Confidence            558888 999999999999999999999996665554332 1  1235667766665444332  567889999999984


Q ss_pred             cCccccCCCCCCCceeeEEEecCCCeEECCCCC-CH-hhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcCchHHHHHHH
Q 024775          174 INEKALEGPKQFGSLAEYTAVEERLLAPKPKNL-DF-VQAAGLPLAIETAYEGLER-TGFSAGKSILVLNGSGGVGSLVI  250 (262)
Q Consensus       174 ~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~-~~-~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga~G~vG~~ai  250 (262)
                                  .+|+||.+++.+.+.|+++.. ++ .....+.....|||.+|.+ .+.++|++|+|.+|+|++|..+.
T Consensus       101 ------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvg  168 (340)
T COG2130         101 ------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVG  168 (340)
T ss_pred             ------------ccceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHH
Confidence                        589999999999999997553 22 3334457778899999965 78999999999999999999999


Q ss_pred             HHHHHcCCccC
Q 024775          251 QVCYYYLEFFF  261 (262)
Q Consensus       251 qlAk~~Ga~V~  261 (262)
                      |+||..|++|.
T Consensus       169 QiAKlkG~rVV  179 (340)
T COG2130         169 QIAKLKGCRVV  179 (340)
T ss_pred             HHHHhhCCeEE
Confidence            99999999984

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.76  E-value=4.1e-18  Score=130.58  Aligned_cols=91  Identities=36%  Similarity=0.448  Sum_probs=73.8

Q ss_pred             CCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCc--------------
Q 024775          111 EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINE--------------  176 (262)
Q Consensus       111 ~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~--------------  176 (262)
                      |+||||||.+++||++|++.++|.. ....++|.++|||++|+|+++|+++++|++||+|+.....              
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~-~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~   79 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGP-PPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPN   79 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSS-SSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhcc-ccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCccc
Confidence            6899999999999999999999852 2236788999999999999999999999999999985431              


Q ss_pred             ----cccCCCCCCCceeeEEEecCCCeEEC
Q 024775          177 ----KALEGPKQFGSLAEYTAVEERLLAPK  202 (262)
Q Consensus       177 ----~~~~~~~~~G~~ae~~~v~~~~~~~l  202 (262)
                          ....+....|+|+||++++++.++++
T Consensus        80 ~c~~~~~~g~~~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   80 LCPNPEVLGLGLDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             GTTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred             cCCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence                12344456899999999999999875

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.70  E-value=1.5e-16  Score=139.84  Aligned_cols=108  Identities=35%  Similarity=0.436  Sum_probs=99.4

Q ss_pred             CCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHH
Q 024775          140 SPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE  219 (262)
Q Consensus       140 ~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~  219 (262)
                      .++|.++|+|++|+|+++|++++.|++||+|+++            +.|++|+.++.+.++++|+++++.+++.+ ..+.
T Consensus        18 ~~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~------------~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~   84 (277)
T cd08255          18 LPLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF------------GPHAERVVVPANLLVPLPDGLPPERAALT-ALAA   84 (277)
T ss_pred             CcCCcccCcceeEEEEEeCCCCCCCCCCCEEEec------------CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHH
Confidence            4578999999999999999999999999999984            35899999999999999999999888888 7899


Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc-cC
Q 024775          220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF-FF  261 (262)
Q Consensus       220 tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~-V~  261 (262)
                      +||++++..++++|++++|+| +|++|++++++|+.+|++ |+
T Consensus        85 ta~~~~~~~~~~~g~~vlI~g-~g~vg~~~i~~a~~~g~~~vi  126 (277)
T cd08255          85 TALNGVRDAEPRLGERVAVVG-LGLVGLLAAQLAKAAGAREVV  126 (277)
T ss_pred             HHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEE
Confidence            999999888999999999997 799999999999999988 64

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.63  E-value=1.6e-14  Score=126.46  Aligned_cols=163  Identities=21%  Similarity=0.240  Sum_probs=119.3

Q ss_pred             eeEEEEcccCCc----ceEEEEe-eecC-CCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCC----ccEEEE
Q 024775           84 MKAWLYGEYGGV----DVLKFDE-KVTV-PQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPG----YDVAGV  153 (262)
Q Consensus        84 ~ka~v~~~~g~~----~~l~~~~-~~~~-p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G----~e~vG~  153 (262)
                      .|+|++..+-..    +.+.+.. +.++ .++++++||||..|.+.+|..+.+++...+.. --.|+.+|    ..++|+
T Consensus         4 nkqvvLk~y~~g~P~~~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~-y~~~~~~G~pi~g~GV~k   82 (343)
T KOG1196|consen    4 NKQVILKNYVTGFPTESDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSD-YAPPYEPGKPIDGFGVAK   82 (343)
T ss_pred             ccEEEEeccCCCCCccccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCccc-ccCcccCCcEecCCceEE
Confidence            567777664221    3344331 2333 35688999999999999999987776543332 11233343    377899


Q ss_pred             EEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCC--eEECC--CCCCHhhHhcc-cchHHHHHHHHH-H
Q 024775          154 VVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL--LAPKP--KNLDFVQAAGL-PLAIETAYEGLE-R  227 (262)
Q Consensus       154 Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~--~~~lP--~~~~~~~aa~l-~~~~~tA~~al~-~  227 (262)
                      |++.  +-.+|++||.|++..            +|.||.+++...  .++++  .+.++.....+ ..+.+|||.++. .
T Consensus        83 Vi~S--~~~~~~~GD~v~g~~------------gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei  148 (343)
T KOG1196|consen   83 VIDS--GHPNYKKGDLVWGIV------------GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEI  148 (343)
T ss_pred             EEec--CCCCCCcCceEEEec------------cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHh
Confidence            9985  556899999999965            699999997654  34443  45555554444 778889999995 5


Q ss_pred             cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          228 TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ...+.|++|+|.||+|++|+.+.|+||.+||+|.
T Consensus       149 ~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VV  182 (343)
T KOG1196|consen  149 CSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVV  182 (343)
T ss_pred             cCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEE
Confidence            8899999999999999999999999999999874

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.47  E-value=7.7e-14  Score=138.54  Aligned_cols=149  Identities=26%  Similarity=0.313  Sum_probs=127.4

Q ss_pred             CCcceEEEEeeecCC---CCCCCeEEEEEEEEecChhhHHhHcCCCCCCC-----CCCCCCCCccEEEEEEEeCCCCCCC
Q 024775           93 GGVDVLKFDEKVTVP---QVKEDQVLIKVVAAALNPVDGKRRQGKFKATD-----SPLPTVPGYDVAGVVVKVGTQVKEF  164 (262)
Q Consensus        93 g~~~~l~~~~~~~~p---~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~-----~~~p~~~G~e~vG~Vv~vG~~v~~~  164 (262)
                      |+...++|. +.+..   +..++.=+.-|.|+.||..|+.+..|+.+..-     .....++|-|++|+          .
T Consensus      1424 GDlsSlrWi-es~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d 1492 (2376)
T KOG1202|consen 1424 GDLSSLRWI-ESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------D 1492 (2376)
T ss_pred             ccccceeee-ecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------c
Confidence            566678888 65543   44667778899999999999999999875431     22346789999887          4


Q ss_pred             CCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCch
Q 024775          165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSG  243 (262)
Q Consensus       165 ~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G  243 (262)
                      +-|.||.++.+         .-++++.+.++.+.++.+|.+-.+++|+..|+.+.|+|++|. +.++++|++|||++|+|
T Consensus      1493 ~~GrRvM~mvp---------AksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsG 1563 (2376)
T KOG1202|consen 1493 ASGRRVMGMVP---------AKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSG 1563 (2376)
T ss_pred             CCCcEEEEeee---------hhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCC
Confidence            45999999886         567889999999999999999999999999999999999995 68999999999999999


Q ss_pred             HHHHHHHHHHHHcCCccC
Q 024775          244 GVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       244 ~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++|++||.+|.++|++||
T Consensus      1564 GVGQAAIaiALa~G~~VF 1581 (2376)
T KOG1202|consen 1564 GVGQAAIAIALAHGCTVF 1581 (2376)
T ss_pred             chhHHHHHHHHHcCCEEE
Confidence            999999999999999998

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=94.41  E-value=0.044  Score=52.91  Aligned_cols=31  Identities=16%  Similarity=0.076  Sum_probs=28.4

Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ..++++|+|+| +|.+|+.+++.||.+|++|+
T Consensus       162 ~~pg~kVlViG-aG~iGL~Ai~~Ak~lGA~V~  192 (509)
T PRK09424        162 KVPPAKVLVIG-AGVAGLAAIGAAGSLGAIVR  192 (509)
T ss_pred             CcCCCEEEEEC-CcHHHHHHHHHHHHCCCEEE
Confidence            46899999999 99999999999999999764

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=91.71  E-value=0.29  Score=46.28  Aligned_cols=41  Identities=24%  Similarity=0.267  Sum_probs=34.3

Q ss_pred             HHHHHHHHc-CCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          220 TAYEGLERT-GFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       220 tA~~al~~~-~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ..|.++.++ ++. .|++|+|.| .|.+|+.+++.++.+|++|.
T Consensus       197 s~~~ai~rat~~~l~Gk~VlViG-~G~IG~~vA~~lr~~Ga~Vi  239 (425)
T PRK05476        197 SLLDGIKRATNVLIAGKVVVVAG-YGDVGKGCAQRLRGLGARVI  239 (425)
T ss_pred             hhHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence            356666654 554 899999999 99999999999999999874

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=91.17  E-value=0.27  Score=48.09  Aligned_cols=32  Identities=16%  Similarity=0.062  Sum_probs=28.6

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          229 GFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ..+.|++|+|.| +|+.|+.+++.++.+|++|.
T Consensus       133 ~~~~g~~V~VIG-aGpaGL~aA~~l~~~G~~V~  164 (564)
T PRK12771        133 APDTGKRVAVIG-GGPAGLSAAYHLRRMGHAVT  164 (564)
T ss_pred             CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence            367899999999 99999999999999998763

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=90.76  E-value=0.25  Score=46.53  Aligned_cols=40  Identities=28%  Similarity=0.245  Sum_probs=32.8

Q ss_pred             HHHHHHH-cC-CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          221 AYEGLER-TG-FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       221 A~~al~~-~~-~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|.++.+ .+ ..+|++|+|.| .|.+|+.+++.++.+|++|.
T Consensus       188 ~~~~i~r~t~~~l~GktVvViG-~G~IG~~va~~ak~~Ga~Vi  229 (413)
T cd00401         188 LIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQSLRGQGARVI  229 (413)
T ss_pred             hHHHHHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            3455543 34 46999999999 99999999999999999874

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=90.66  E-value=0.27  Score=26.73  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=13.6

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQV  109 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~  109 (262)
                      |||++|+++++   .+++ +++.|.+
T Consensus         1 MkAv~y~G~~~---v~ve-~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGPKD---VRVE-EVPDPKI   22 (23)
T ss_dssp             -EEEEEEETTE---EEEE-EE----S
T ss_pred             CcceEEeCCCc---eEEE-ECCCccc
Confidence            89999999998   4455 8887765

>PRK08324 short chain dehydrogenase; Validated

Probab=90.11  E-value=0.26  Score=49.34  Aligned_cols=66  Identities=18%  Similarity=0.154  Sum_probs=43.8

Q ss_pred             CceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       186 G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .++.+|..+++..++.+ +..+.+++....         ........|+++||.||+|++|+..++.+...|++|+
T Consensus       385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~---------~~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vv  450 (681)
T PRK08324        385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQR---------MPKPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVV  450 (681)
T ss_pred             hhcCCccCCChhhhcce-eeehhhhhhhhc---------CCCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEE
Confidence            45667777776666555 344444443100         0012234789999999999999999999999998764

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=89.33  E-value=0.57  Score=40.84  Aligned_cols=77  Identities=18%  Similarity=0.161  Sum_probs=49.1

Q ss_pred             CCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH--cCCCCCCEEEEE
Q 024775          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER--TGFSAGKSILVL  239 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~--~~~~~g~~VlI~  239 (262)
                      +.+++||+++...            +|.+|.. +...++.+++++.+..+..    - +...+++.  ....++++||-.
T Consensus        65 ~p~~~g~~~~i~p------------~~~~~~~-~~~~~i~i~p~~afgtg~h----~-tt~~~l~~l~~~~~~~~~VLDi  126 (250)
T PRK00517         65 HPIRIGDRLWIVP------------SWEDPPD-PDEINIELDPGMAFGTGTH----P-TTRLCLEALEKLVLPGKTVLDV  126 (250)
T ss_pred             CCEEEcCCEEEEC------------CCcCCCC-CCeEEEEECCCCccCCCCC----H-HHHHHHHHHHhhcCCCCEEEEe
Confidence            3467898877644            4666644 6667788888877654432    1 12223332  235789999999


Q ss_pred             cCchHHHHHHHHHHHHcCCc
Q 024775          240 NGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       240 Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      | +|. |..++.+++ .|+.
T Consensus       127 G-cGs-G~l~i~~~~-~g~~  143 (250)
T PRK00517        127 G-CGS-GILAIAAAK-LGAK  143 (250)
T ss_pred             C-CcH-HHHHHHHHH-cCCC
Confidence            8 887 888876655 5654

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=89.31  E-value=0.27  Score=46.41  Aligned_cols=36  Identities=11%  Similarity=0.175  Sum_probs=32.5

Q ss_pred             HHcCCCCCCEEE----EEcCchHHHHHHHHHHHHcCCccC
Q 024775          226 ERTGFSAGKSIL----VLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       226 ~~~~~~~g~~Vl----I~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ...++++|+.+|    |+||+|++|.+++|+++..|++||
T Consensus        27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~   66 (450)
T PRK08261         27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVV   66 (450)
T ss_pred             cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeee
Confidence            347888999988    889999999999999999999987

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=88.95  E-value=0.44  Score=46.64  Aligned_cols=35  Identities=14%  Similarity=0.004  Sum_probs=31.1

Q ss_pred             HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          227 RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ..+.+.|++|||.||+|++|+.+++.+...|.+|+
T Consensus        74 ~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vv  108 (576)
T PLN03209         74 ELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVR  108 (576)
T ss_pred             ccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEE
Confidence            56788999999999999999999998888898774

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=88.77  E-value=0.49  Score=39.04  Aligned_cols=32  Identities=16%  Similarity=0.144  Sum_probs=27.4

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          229 GFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .--.|.+|.|+| .|.+|+.+++.++.+|++|+
T Consensus        32 ~~l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~   63 (178)
T PF02826_consen   32 RELRGKTVGIIG-YGRIGRAVARRLKAFGMRVI   63 (178)
T ss_dssp             S-STTSEEEEES-TSHHHHHHHHHHHHTT-EEE
T ss_pred             cccCCCEEEEEE-EcCCcCeEeeeeecCCceeE
Confidence            345799999999 99999999999999999874

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=88.71  E-value=0.72  Score=43.34  Aligned_cols=40  Identities=20%  Similarity=0.223  Sum_probs=32.9

Q ss_pred             HHHHHHHc-C-CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          221 AYEGLERT-G-FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       221 A~~al~~~-~-~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+.++.+. + ...|++|+|.| .|.+|+.+++.++.+|++|.
T Consensus       181 ~~~~i~r~t~~~l~Gk~VvViG-~G~IG~~vA~~ak~~Ga~Vi  222 (406)
T TIGR00936       181 TIDGILRATNLLIAGKTVVVAG-YGWCGKGIAMRARGMGARVI  222 (406)
T ss_pred             HHHHHHHhcCCCCCcCEEEEEC-CCHHHHHHHHHHhhCcCEEE
Confidence            44555443 4 46899999999 99999999999999999874

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=88.56  E-value=1.3  Score=39.80  Aligned_cols=29  Identities=21%  Similarity=0.180  Sum_probs=26.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|.+|+|+| .|.+|+.+++.++.+|++|+
T Consensus       151 ~g~kvlViG-~G~iG~~~a~~L~~~Ga~V~  179 (296)
T PRK08306        151 HGSNVLVLG-FGRTGMTLARTLKALGANVT  179 (296)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEE
Confidence            689999999 89999999999999999774

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=87.52  E-value=0.67  Score=44.85  Aligned_cols=30  Identities=17%  Similarity=0.144  Sum_probs=27.3

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .++++|+|+| +|.+|+.++++|+.+|+.|+
T Consensus       162 vp~akVlViG-aG~iGl~Aa~~ak~lGA~V~  191 (511)
T TIGR00561       162 VPPAKVLVIG-AGVAGLAAIGAANSLGAIVR  191 (511)
T ss_pred             CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            4678999999 99999999999999999774

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=86.93  E-value=0.36  Score=43.58  Aligned_cols=60  Identities=17%  Similarity=0.077  Sum_probs=43.4

Q ss_pred             CeEECCCCCCHhhHhcccchHHHHHHHHHHcCC----CCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          198 LLAPKPKNLDFVQAAGLPLAIETAYEGLERTGF----SAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       198 ~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~----~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      ..+++|+.+..+.+... .++..++.+++.+..    .++++|+|.| +|.+|+.+++.++..|++
T Consensus       140 ~a~~~~k~vr~et~i~~-~~~sv~~~Av~~a~~~~~~l~~~~V~ViG-aG~iG~~~a~~L~~~g~~  203 (311)
T cd05213         140 KAIKVGKRVRTETGISR-GAVSISSAAVELAEKIFGNLKGKKVLVIG-AGEMGELAAKHLAAKGVA  203 (311)
T ss_pred             HHHHHHHHHhhhcCCCC-CCcCHHHHHHHHHHHHhCCccCCEEEEEC-cHHHHHHHHHHHHHcCCC
Confidence            45667777776666554 234457777754432    4799999999 899999999999887753

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK05866 short chain dehydrogenase; Provisional

Probab=85.73  E-value=0.91  Score=40.35  Aligned_cols=30  Identities=23%  Similarity=0.268  Sum_probs=26.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+.+++|.||+|++|...++.+...|++|+
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi   68 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVV   68 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            467899999999999999888888888764

>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61

Probab=85.22  E-value=1.5  Score=30.76  Aligned_cols=40  Identities=13%  Similarity=0.114  Sum_probs=30.7

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCc-hHHHHHHHHHHHHcCCcc
Q 024775          221 AYEGLERTGFSAGKSILVLNGS-GGVGSLVIQVCYYYLEFF  260 (262)
Q Consensus       221 A~~al~~~~~~~g~~VlI~Ga~-G~vG~~aiqlAk~~Ga~V  260 (262)
                      -|.+|....-+-++.+||+|++ .+...++.+.|+..|..+
T Consensus        20 i~~~Ld~~~~~~~~~~lvhGga~~GaD~iA~~wA~~~gv~~   60 (71)
T PF10686_consen   20 IWAALDKVHARHPDMVLVHGGAPKGADRIAARWARERGVPV   60 (71)
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHHHCCCee
Confidence            3445544444447889999999 899999999999998754

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=84.59  E-value=1.1  Score=42.42  Aligned_cols=105  Identities=17%  Similarity=0.146  Sum_probs=63.0

Q ss_pred             CCCCccEEEEEEEeCCCCCCCCCCCEEE-EecC-------ccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhccc
Q 024775          144 TVPGYDVAGVVVKVGTQVKEFKEGDEVY-GDIN-------EKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLP  215 (262)
Q Consensus       144 ~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~-~~~~-------~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~  215 (262)
                      ..-|+|+++.+.+|+++..+.-.|+.-+ +.+.       .....+....+.|++.+        ++++.+..+.. ...
T Consensus        90 ~~~g~ea~~hl~~V~~GldS~V~GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~--------~~~k~v~~~t~-i~~  160 (423)
T PRK00045         90 VHEGEEAVRHLFRVASGLDSMVLGEPQILGQVKDAYALAQEAGTVGTILNRLFQKAF--------SVAKRVRTETG-IGA  160 (423)
T ss_pred             hcCCHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH--------HHHhhHhhhcC-CCC
Confidence            4569999999999999987766666533 1111       00001111122333332        33333332222 122


Q ss_pred             chHHHHHHHHHHcC----CCCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775          216 LAIETAYEGLERTG----FSAGKSILVLNGSGGVGSLVIQVCYYYLE  258 (262)
Q Consensus       216 ~~~~tA~~al~~~~----~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga  258 (262)
                      .+...++.+++.+.    -..|++|+|+| +|.+|+++++.++..|+
T Consensus       161 ~~~Sv~~~Av~~a~~~~~~~~~~~vlViG-aG~iG~~~a~~L~~~G~  206 (423)
T PRK00045        161 GAVSVASAAVELAKQIFGDLSGKKVLVIG-AGEMGELVAKHLAEKGV  206 (423)
T ss_pred             CCcCHHHHHHHHHHHhhCCccCCEEEEEC-chHHHHHHHHHHHHCCC
Confidence            23445777775432    36789999999 89999999999999987

>PRK06128 oxidoreductase; Provisional

Probab=83.68  E-value=1.1  Score=39.68  Aligned_cols=30  Identities=13%  Similarity=0.120  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|.++||.||+|++|...++.....|++|+
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~   83 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIA   83 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEE
Confidence            578999999999999998888888898763

>TIGR00518 alaDH alanine dehydrogenase

Probab=83.61  E-value=2  Score=39.90  Aligned_cols=28  Identities=11%  Similarity=0.084  Sum_probs=24.2

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          233 GKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +.+|+|.| +|.+|+.+++.++.+|++|+
T Consensus       167 ~~~VlViG-aG~vG~~aa~~a~~lGa~V~  194 (370)
T TIGR00518       167 PGDVTIIG-GGVVGTNAAKMANGLGATVT  194 (370)
T ss_pred             CceEEEEc-CCHHHHHHHHHHHHCCCeEE
Confidence            34588988 89999999999999999764

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07985 oxidoreductase; Provisional

Probab=83.58  E-value=1.2  Score=39.57  Aligned_cols=30  Identities=17%  Similarity=0.111  Sum_probs=26.6

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|.++||.||+|++|...++.+...|++|+
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi   77 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGADVA   77 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEE
Confidence            567999999999999999888888898874

>PLN02780 ketoreductase/ oxidoreductase

Probab=82.84  E-value=1.4  Score=39.76  Aligned_cols=30  Identities=17%  Similarity=-0.016  Sum_probs=25.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|.+++|.||++++|...++.....|++|.
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vi   81 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLV   81 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEE
Confidence            589999999999999998877777888763

>PLN02494 adenosylhomocysteinase

Probab=81.87  E-value=1.5  Score=41.94  Aligned_cols=39  Identities=26%  Similarity=0.204  Sum_probs=31.9

Q ss_pred             HHHHHH-cCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          222 YEGLER-TGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       222 ~~al~~-~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +.++.+ .++ -.|++|+|.| .|.+|+.+++.++.+|++|.
T Consensus       241 ~d~i~r~t~i~LaGKtVvViG-yG~IGr~vA~~aka~Ga~VI  281 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICG-YGDVGKGCAAAMKAAGARVI  281 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            455543 343 6799999999 99999999999999999874

>PTZ00414 10 kDa heat shock protein; Provisional

Probab=80.85  E-value=3.2  Score=31.15  Aligned_cols=47  Identities=28%  Similarity=0.193  Sum_probs=29.0

Q ss_pred             EEEEEEeCCCCC----CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEE
Q 024775          151 AGVVVKVGTQVK----EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAP  201 (262)
Q Consensus       151 vG~Vv~vG~~v~----~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~  201 (262)
                      .|+|++||++..    .+++||+|+..-.    .|.+-.-.=.+|+++.++.++-
T Consensus        46 ~g~VvAVG~G~~~~~~~Vk~GD~Vl~~~y----~Gtevk~dg~ey~i~~e~DILa   96 (100)
T PTZ00414         46 EGTVVAVAAATKDWTPTVKVGDTVLLPEF----GGSSVKVEGEEFFLYNEDSLLG   96 (100)
T ss_pred             eeEEEEECCCCccccceecCCCEEEEcCC----CCcEEEECCEEEEEEEhHHEEE
Confidence            599999999753    4899999985321    1110000116788877766553

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=80.27  E-value=1.9  Score=40.72  Aligned_cols=30  Identities=27%  Similarity=0.318  Sum_probs=27.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +|+++||.|++|++|...++.+...|++|+
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi  238 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVV  238 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999888898874

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=80.05  E-value=4.5  Score=36.24  Aligned_cols=49  Identities=20%  Similarity=0.094  Sum_probs=38.2

Q ss_pred             cccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       213 ~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ..|+.....+..++..++ -.|.+|+|.|.+.-+|.-++.++...|++|+
T Consensus       137 ~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt  186 (286)
T PRK14175        137 FVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT  186 (286)
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE
Confidence            456666556666666654 3799999999666699999999999999885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	262
2vn8_A	375	Crystal Structure Of Human Reticulon 4 Interacting		2e-11
3gaz_A	343	Crystal Structure Of An Alcohol Dehydrogenase Super		4e-11
3b6z_A	371	Lovastatin Polyketide Enoyl Reductase (Lovc) Comple		1e-09
3fbg_A	346	Crystal Structure Of A Putative Arginate Lyase From		2e-09
3gqv_A	371	Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant		4e-09
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		6e-09
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		1e-08
3tqh_A	321	Structure Of The Quinone Oxidoreductase From Coxiel		1e-07
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-06
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-06
4dvj_A	363	Crystal Structure Of A Putative Zinc-Dependent Alco		8e-06
2cf2_D	295	Architecture Of Mammalian Fatty Acid Synthase Lengt		5e-05
1iyz_A	302	Crystal Structures Of The Quinone Oxidoreductase Fr		6e-05
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		8e-04

>pdb|2VN8|A Chain A, Crystal Structure Of Human Reticulon 4 Interacting Protein 1 In Complex With Nadph Length = 375

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 20/158 (12%)
Query: 86  AWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQG----------- 133
           AW+  +YG  +VL+F + + +P +   ++V++KV AA++NP+D   R G           
Sbjct: 24  AWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRD 83
Query: 134 --KFKATDSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEY 191
               K      P                  K FK GDEV+  +       P + G+L+E+
Sbjct: 84  PLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP------PWKQGTLSEF 137
Query: 192 TAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG 229
             V    ++ KPK+L   QAA LP    TA+  + + G
Sbjct: 138 VVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVG 175

>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans Length = 343

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/147 (35%), Positives = 71/147 (48%), Gaps = 8/147 (5%)
Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           T P+ + A +  E  G  VL+   K+  PQ    QVL+++ A+  NP+D K R G+    
Sbjct: 4   TTPTXIAA-VVEEANGPFVLR---KLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHA 59
Query: 139 DSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL 198
             PLP                    F+ GD V+G        G  Q G+ A++ AV+ RL
Sbjct: 60  QQPLPAILGXDLAGTVVAVGPEVDSFRVGDAVFGLTGGV---GGLQ-GTHAQFAAVDARL 115
Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGL 225
           LA KP  L   QA+ LPL   TA+EGL
Sbjct: 116 LASKPAALTXRQASVLPLVFITAWEGL 142

>pdb|3B6Z|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Complexed With 2'- Phosphoadenosyl Isomer Of Crotonoyl-Coa Length = 371

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/116 (36%), Positives = 53/116 (45%), Gaps = 6/116 (5%)
Query: 106 VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXXXXKEFK 165
            P +  DQV ++V A A+NP D K R G+F    + L T                    +
Sbjct: 31  CPMLPRDQVYVRVEAVAINPSDTKMR-GQFATPWAFLGTDYAGTVVAVGSDVT----HIQ 85
Query: 166 EGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA 221
            GD VYG  NE     P Q G+ ++YT    R+ A  PK L F QAA LP  I TA
Sbjct: 86  VGDRVYGAQNEMCPRTPDQ-GAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTA 140

>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From Staphylococcus Haemolyticus Length = 346

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 56/123 (45%), Gaps = 10/123 (8%)
Query: 103 KVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXXXXK 162
            + +P+ K  ++L+K+ + ++NPVD K+R        S  P                   
Sbjct: 24  NLDIPEPKVHEILVKIQSISVNPVDTKQRLMDV----SKAPRVLGFDAIGVVESVGNEVT 79
Query: 163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY 222
            F +GD VY          P Q GS AEY  + ERL+A  PKN+   QA  LPL   TAY
Sbjct: 80  MFNQGDIVYYS------GSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAY 133
Query: 223 EGL 225
           E L
Sbjct: 134 ETL 136

>pdb|3GQV|A Chain A, Lovastatin Polyketide Enoyl Reductase (Lovc) Mutant K54s With Bound Nadp Length = 371

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 52/116 (44%), Gaps = 6/116 (5%)
Query: 106 VPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXXXXKEFK 165
            P +  DQV ++V A A+NP D   R G+F    + L T                    +
Sbjct: 31  CPMLPRDQVYVRVEAVAINPSDTSMR-GQFATPWAFLGTDYAGTVVAVGSDV----THIQ 85
Query: 166 EGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA 221
            GD VYG  NE     P Q G+ ++YT    R+ A  PK L F QAA LP  I TA
Sbjct: 86  VGDRVYGAQNEMCPRTPDQ-GAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTA 140

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 60/142 (42%), Gaps = 9/142 (6%)
Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A    E+GG +VLK    + VP  K+ QVLIKV A  +NPV+   R G + +    LP
Sbjct: 30  MRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTY-SRKPLLP 88
Query: 144 TXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
                               FK+GD V+              G  AEY    +  +   P
Sbjct: 89  YTPGSDVAGVIEAVGDNASAFKKGDRVF--------TSSTISGGYAEYALAADHTVYKLP 140
Query: 204 KNLDFVQAAGLPLAIETAYEGL 225
           + LDF Q A + +   TAY  L
Sbjct: 141 EKLDFKQGAAIGIPYFTAYRAL 162

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 24/160 (15%)
Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A +    GG +VL+  + + VP+    +V +++ AAALN +D   R+G   +   PLP
Sbjct: 1   MRAVVMRARGGPEVLEVAD-LPVPEPGPKEVRVRLKAAALNHLDVWVRKG-VASPKLPLP 58
Query: 144 TXXXXXXXXXXXXXXXXXKEFKEGDEVYGDIN--------EKALEG-----PK------- 183
                             + F  GDEV   IN        E+ L G     P+       
Sbjct: 59  HVLGADGSGVVDAVGPGVEGFAPGDEVV--INPGLSCGRCERCLAGEDNLCPRYQILGEH 116
Query: 184 QFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYE 223
           + G+ AEY  + E  LAPKPKNL F +AA +PL   TA++
Sbjct: 117 RHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQ 156

>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii Length = 321

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 67/155 (43%), Gaps = 11/155 (7%)
Query: 83  EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK---FKATD 139
           E KA  + ++G   VLK  +  T P+ +++Q LIKV AA+LNP+D K R G     K   
Sbjct: 6   EXKAIQFDQFGPPKVLKLVDTPT-PEYRKNQXLIKVHAASLNPIDYKTRNGSGFVAKKLK 64
Query: 140 SPLPTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEG-PKQFGSLAEYTAVEERL 198
           + LP+                      GD+V G      + G P      AEY       
Sbjct: 65  NNLPSGLGYDFSGEVIELGSDVNNVNIGDKVXG------IAGFPDHPCCYAEYVCASPDT 118
Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAG 233
           +  K + L F+QAA LP A  TA + L +     G
Sbjct: 119 IIQKLEKLSFLQAASLPTAGLTALQALNQAEVKQG 153

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 100 FDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXX 159
           + ++V  P   E +VL+KV A+ALN  D  +RQG++       P                
Sbjct: 22  YVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP-----PPGASNILGLEASGHVA 76
Query: 160 XXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE 219
                 +G    GD     L G    G  A+Y  V E LL P P+ L   QAA +P A  
Sbjct: 77  ELGPGCQGHWKIGDTAMALLPG----GGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWL 132
Query: 220 TAYEGLERTG 229
           TA++ L   G
Sbjct: 133 TAFQLLHLVG 142

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 9/130 (6%)
Query: 100 FDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTXXXXXXXXXXXXXXX 159
           + ++V  P   E +VL+KV A+ALN  D  +RQG++       P                
Sbjct: 38  YVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP-----PPGASNILGLEASGHVA 92
Query: 160 XXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE 219
                 +G    GD     L G    G  A+Y  V E LL P P+ L   QAA +P A  
Sbjct: 93  ELGPGCQGHWKIGDTAMALLPG----GGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWL 148
Query: 220 TAYEGLERTG 229
           TA++ L   G
Sbjct: 149 TAFQLLHLVG 158

>pdb|4DVJ|A Chain A, Crystal Structure Of A Putative Zinc-Dependent Alcohol Dehydrogenase Protein From Rhizobium Etli Cfn 42 Length = 363

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 96  DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGK-RRQGKFKATDSPLPTXXXXXXXXXX 154
           D    D ++  P      +L++V A ++NPVD K RR      TD  +            
Sbjct: 37  DASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKV---IGYDAAGIV 93
Query: 155 XXXXXXXKEFKEGDEVY--GDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAA 212
                    F+ GDEV+  G I           G+ AE+  V+ER++  KPK LD+ +AA
Sbjct: 94  SAVGPDVTLFRPGDEVFYAGSIIRP--------GTNAEFHLVDERIVGRKPKTLDWAEAA 145
Query: 213 GLPLAIETAYE 223
            LPL   TA+E
Sbjct: 146 ALPLTSITAWE 156

>pdb|2CF2|D Chain D, Architecture Of Mammalian Fatty Acid Synthase Length = 295

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 26/152 (17%)
Query: 84  MKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           MKAW+    GG ++++   E    P+ +E +V+++V A  LN  D   R G +     P 
Sbjct: 1   MKAWVLKRLGGPLELVDLPE----PEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHP- 55
Query: 143 PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
                                F  G EV G +  +        G LAE  AV +  L P 
Sbjct: 56  --------------------PFIPGMEVVGVVEGRRYAALVPQGGLAERVAVPKGALLPL 95
Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
           P+ L   +AA  P++  TAY  L+R     G+
Sbjct: 96  PEGLSPEEAAAFPVSFLTAYLALKRAQARPGE 127

>pdb|1IYZ|A Chain A, Crystal Structures Of The Quinone Oxidoreductase From Thermus Thermophilus Hb8 And Its Complex With Nadph Length = 302

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 26/146 (17%)
Query: 84  MKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           MKAW+    GG ++++   E    P+ +E +V+++V A  LN  D   R G +     P 
Sbjct: 1   MKAWVLKRLGGPLELVDLPE----PEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHP- 55
Query: 143 PTXXXXXXXXXXXXXXXXXKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
                                F  G EV G +  +        G LAE  AV +  L P 
Sbjct: 56  --------------------PFIPGMEVVGVVEGRRYAALVPQGGLAERVAVPKGALLPL 95
Query: 203 PKNLDFVQAAGLPLAIETAYEGLERT 228
           P+ L   +AA  P++  TAY  L+R 
Sbjct: 96  PEGLSPEEAAAFPVSFLTAYLALKRA 121

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 67/175 (38%), Gaps = 23/175 (13%)
Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           T+P  MKA +   YG    L+ +E V VP     QVL+K+ A+ +   D    +G +   
Sbjct: 2   TLPQTMKAAVVHAYGAP--LRIEE-VKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWP-V 57
Query: 139 DSPLPTXXXXXXXXXXXXXXXXXKEFKEGDEV-------YGDINEKALEGPKQF------ 185
             PLP                     KEGD V            E  L G +        
Sbjct: 58  KPPLPFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN 117
Query: 186 ------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
                 G  AEY   +   +   PKN++F + A +  A  T Y+GL++T    G+
Sbjct: 118 TGYSVNGGYAEYVLADPNYVGILPKNVEFAEIAPILCAGVTVYKGLKQTNARPGQ 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	1e-72
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	1e-69
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	5e-67
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	4e-65
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	5e-65
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	1e-63
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	1e-54
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	2e-48
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	5e-48
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	1e-46
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	2e-46
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	4e-45
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	1e-43
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	2e-43
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	2e-43
3gms_A	340	Putative NADPH:quinone reductase; structural genom	6e-43
4eye_A	342	Probable oxidoreductase; structural genomics, niai	2e-41
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	2e-41
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	1e-40
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	1e-36
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	2e-34
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	5e-34
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	2e-33
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	3e-33
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	9e-33
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	5e-32
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	2e-30
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	5e-27
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	1e-25
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	3e-24
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	5e-24
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	3e-22
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	4e-21
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	3e-19
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-18
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	1e-18
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	3e-18
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	4e-18
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	7e-18
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	1e-17
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	2e-17
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	3e-17
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	5e-16
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	2e-14
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	7e-14
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	2e-13
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-13
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	4e-13
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	4e-13
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	8e-13
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	3e-10
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	4e-10
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	3e-09
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	5e-09
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	5e-09
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	2e-08
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	5e-08
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	8e-08
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	1e-07
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	3e-07
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	3e-07
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-06
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score =  224 bits (573), Expect = 1e-72
 Identities = 62/174 (35%), Positives = 89/174 (51%), Gaps = 9/174 (5%)

Query: 81  PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA--- 137
             EMKA  + ++G   VLK  +    P+ +++Q+LIKV AA+LNP+D K R G       
Sbjct: 4   MKEMKAIQFDQFGPPKVLKLVD-TPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKK 62

Query: 138 TDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEER 197
             + LP+  GYD +G V+++G+ V     GD+V G         P      AEY      
Sbjct: 63  LKNNLPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIAG-----FPDHPCCYAEYVCASPD 117

Query: 198 LLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQ 251
            +  K + L F+QAA LP A  TA + L +     G  +L+  G+GGVG L IQ
Sbjct: 118 TIIQKLEKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQ 171

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score =  216 bits (552), Expect = 1e-69
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 11/169 (6%)

Query: 84  MKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           M+      Y      +  +  V +P +  D +L++  A  +NPVD K  +      +   
Sbjct: 2   MEQHQVWAYQTKTHSVTLNS-VDIPALAADDILVQNQAIGINPVDWKFIKANPI--NWSN 58

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
             VPG D AGV+VKVG +V     G  V            K+ GS AE+T +    +   
Sbjct: 59  GHVPGVDGAGVIVKVGAKVDSKMLGRRVAYHT------SLKRHGSFAEFTVLNTDRVMTL 112

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQ 251
           P NL F +AA LP  + TA++  E+   +  + +L+  G G V +L+ Q
Sbjct: 113 PDNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLI-VGFGAVNNLLTQ 160

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score =  211 bits (539), Expect = 5e-67
 Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 25/192 (13%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKA 137
            +  +  AW+  +YG  +VL+F + + +P +   ++V++KV AA++NP+D   R G    
Sbjct: 17  NLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGAT 76

Query: 138 -------------TDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQ 184
                             P   G DV+GVV++ G  VK FK GDEV+  +       P +
Sbjct: 77  ALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAV------PPWK 130

Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-----FSAGKSILVL 239
            G+L+E+  V    ++ KPK+L   QAA LP    TA+  + + G        GK +L+L
Sbjct: 131 QGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLIL 190

Query: 240 NGSGGVGSLVIQ 251
             SGGVG+  IQ
Sbjct: 191 GASGGVGTFAIQ 202

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score =  206 bits (525), Expect = 4e-65
 Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 18/193 (9%)

Query: 68  SSTEAEPTKVGTVPSEMKAWLYGEYGGVD---VLKFDEKVTVPQVKEDQVLIKVVAAALN 124
            S+  +          MKA  Y +   +     L  D ++  P      +L++V A ++N
Sbjct: 7   HSSGVDLGTENLYFQSMKAVGYNKPAPITDDASLL-DIELPKPAPAGHDILVEVKAVSVN 65

Query: 125 PVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQ 184
           PVD K R+      D     V GYD AG+V  VG  V  F+ GDEV+      A    + 
Sbjct: 66  PVDYKVRRSTPP--DGTDWKVIGYDAAGIVSAVGPDVTLFRPGDEVFY-----AGSIIRP 118

Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL------ERTGFSAGKSILV 238
            G+ AE+  V+ER++  KPK LD+ +AA LPL   TA+E         +    A  +IL+
Sbjct: 119 -GTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILI 177

Query: 239 LNGSGGVGSLVIQ 251
           + G+GGVGS+ +Q
Sbjct: 178 VGGAGGVGSIAVQ 190

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score =  205 bits (523), Expect = 5e-65
 Identities = 67/174 (38%), Positives = 93/174 (53%), Gaps = 8/174 (4%)

Query: 81  PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS 140
              M A +  E  G  VL    K+  PQ    QVL+++ A+  NP+D K R G+      
Sbjct: 5   TPTMIAAVVEEANGPFVL---RKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQ 61

Query: 141 PLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLA 200
           PLP + G D+AG VV VG +V  F+ GD V+G             G+ A++ AV+ RLLA
Sbjct: 62  PLPAILGMDLAGTVVAVGPEVDSFRVGDAVFGLTG----GVGGLQGTHAQFAAVDARLLA 117

Query: 201 PKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVC 253
            KP  L   QA+ LPL   TA+EGL +R     G+++L+  G GGVG + IQ+ 
Sbjct: 118 SKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIA 171

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score =  201 bits (514), Expect = 1e-63
 Identities = 65/178 (36%), Positives = 96/178 (53%), Gaps = 21/178 (11%)

Query: 84  MKAWLYGEYGGV---DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS 140
           +KA  + +   +   ++ K    + +P+ K  ++L+K+ + ++NPVD K+R         
Sbjct: 3   LKAIGFEQPFKLSDGNLFKTFN-LDIPEPKVHEILVKIQSISVNPVDTKQRLMDVS---- 57

Query: 141 PLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLA 200
             P V G+D  GVV  VG +V  F +GD VY   +      P Q GS AEY  + ERL+A
Sbjct: 58  KAPRVLGFDAIGVVESVGNEVTMFNQGDIVYYSGS------PDQNGSNAEYQLINERLVA 111

Query: 201 PKPKNLDFVQAAGLPLAIETAYEGL-ERTGFS------AGKSILVLNGSGGVGSLVIQ 251
             PKN+   QA  LPL   TAYE L +  G S       GK++L++NG+GGVGS+  Q
Sbjct: 112 KAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQ 169

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score =  179 bits (455), Expect = 1e-54
 Identities = 57/185 (30%), Positives = 77/185 (41%), Gaps = 22/185 (11%)

Query: 81  PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS 140
           P +  A    ++  V V         P +  DQV ++V A A+NP D   R         
Sbjct: 9   PPQQTALTVNDHDEVTVW---NAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQFA----- 60

Query: 141 PLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLA 200
                 G D AG VV VG+ V   + GD VYG  NE     P Q G+ ++YT    R+ A
Sbjct: 61  TPWAFLGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQ-GAFSQYTVTRGRVWA 119

Query: 201 PKPKNLDFVQAAGLPLAIETAYEGLERTGF-------------SAGKSILVLNGSGGVGS 247
             PK L F QAA LP  I TA   ++  G              S    +LV  GS    +
Sbjct: 120 KIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATAT 179

Query: 248 LVIQV 252
           + +Q+
Sbjct: 180 VTMQM 184

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score =  162 bits (413), Expect = 2e-48
 Identities = 65/176 (36%), Positives = 86/176 (48%), Gaps = 10/176 (5%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           T    M+A    E+GG +VLK    + VP  K+ QVLIKV A  +NPV+   R G + + 
Sbjct: 25  TGQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTY-SR 83

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL 198
              LP  PG DVAGV+  VG     FK+GD V+      +       G  AEY    +  
Sbjct: 84  KPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVFT-----SSTIS---GGYAEYALAADHT 135

Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVC 253
           +   P+ LDF Q A + +   TAY  L       AG+S+LV   SGGVG    Q+ 
Sbjct: 136 VYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIA 191

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  161 bits (410), Expect = 5e-48
 Identities = 62/189 (32%), Positives = 91/189 (48%), Gaps = 21/189 (11%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A +    GG +VL+  + + VP+    +V +++ AAALN +D   R+G       PLP
Sbjct: 1   MRAVVMRARGGPEVLEVAD-LPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKL-PLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQF------------------ 185
            V G D +GVV  VG  V+ F  GDEV  +         +                    
Sbjct: 59  HVLGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRH 118

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGG 244
           G+ AEY  + E  LAPKPKNL F +AA +PL   TA++ + ++ G   G  +LV+    G
Sbjct: 119 GTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSG 178

Query: 245 VGSLVIQVC 253
           V    IQ+ 
Sbjct: 179 VSVAAIQIA 187

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score =  157 bits (400), Expect = 1e-46
 Identities = 52/176 (29%), Positives = 86/176 (48%), Gaps = 12/176 (6%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           ++P EM+      +GG DV+   +   +P   E +VL++  A  +N  D  +RQG +   
Sbjct: 24  SLPQEMRFVDLKSFGGPDVMVIGK-RPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPP- 81

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL 198
                 + G +++G +V VG  V  +  GD+V G        G    G+ AEY  +    
Sbjct: 82  PKDASPILGLELSGEIVGVGPGVSGYAVGDKVCG-----LANG----GAYAEYCLLPAGQ 132

Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVC 253
           + P PK  D V+AA LP    T +  L +  G + G+S+L+  G+ G+G+  IQ+ 
Sbjct: 133 ILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLA 188

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score =  157 bits (399), Expect = 2e-46
 Identities = 52/172 (30%), Positives = 83/172 (48%), Gaps = 12/172 (6%)

Query: 83  EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           EM+A +   +GG++ L+      +P+ ++ ++ I+V A  LN +D   RQG         
Sbjct: 3   EMRAVVLAGFGGLNKLRLFR-KAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNP-PKT 60

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P VPG++ +G+V  +G  VK ++ GD V       A      + + AE        +   
Sbjct: 61  PLVPGFECSGIVEALGDSVKGYEIGDRVM------AFVN---YNAWAEVVCTPVEFVYKI 111

Query: 203 PKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVC 253
           P ++ F +AA  P+   TAY  L E      G S+LV +  GGVG  V Q+C
Sbjct: 112 PDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLC 163

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  153 bits (390), Expect = 4e-45
 Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 16/179 (8%)

Query: 79  TVPSEMKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK--F 135
           ++P+ ++A +YG +G    V++    + +  V+   V +K++AA +NP D    QG    
Sbjct: 22  SMPARVRALVYGHHGDPAKVVELKN-LELAAVRGSDVRVKMLAAPINPSDINMIQGNYGL 80

Query: 136 KATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVE 195
                 LP V G +    VV VG+ V   K GD V               G+        
Sbjct: 81  LP---ELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIP--------ANAGLGTWRTEAVFS 129

Query: 196 ERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVC 253
           E  L   P ++    AA L +   TAY  L +      G S++    + GVG  VIQ+ 
Sbjct: 130 EEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIA 188

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  152 bits (385), Expect = 1e-43
 Identities = 62/237 (26%), Positives = 88/237 (37%), Gaps = 49/237 (20%)

Query: 63  SQAAASSTEAEPTKVGTVPSEMKAWL-----------YGEYGGVDVLKFDEKVTVPQVKE 111
           S+A      A   +   VP    A               +      L+  E V +P++  
Sbjct: 4   SRAVLDGASAAEIEAAPVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGE-VPMPELAP 62

Query: 112 DQVLIKVVAAALNPVD----------------GKRRQGKFKATDSPLPTVPGYDVAGVVV 155
           D+VL+ V+A+++N                      RQG +         V G D +GVVV
Sbjct: 63  DEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATRHDQPYHVLGSDCSGVVV 122

Query: 156 KVGTQVKEFKEGDEVYG------------------DINEKALEGPKQFGSLAEYTAVEER 197
           + G  V+ +K GD V                       ++A      FG LAEY  V   
Sbjct: 123 RTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYGVVRAS 182

Query: 198 LLAPKPKNLDFVQAAGLPLAIETAYEGL---ERTGFSAGKSILVLNGSGGVGSLVIQ 251
            L PKP +L + +AA  PL   TAY  L          G  +L+   SGG+GS  IQ
Sbjct: 183 QLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQ 239

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  150 bits (380), Expect = 2e-43
 Identities = 59/218 (27%), Positives = 89/218 (40%), Gaps = 33/218 (15%)

Query: 52  SYLPLGVQASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKE 111
           S + LG +    Q+              +   M+ W   E      LK  E   VP+  E
Sbjct: 9   SGVDLGTENLYFQS-------------MMSKWMQEWST-ETVAPHDLKLAE-RPVPEAGE 53

Query: 112 DQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVY 171
             ++++ +A +LN  D    +      D   P VP  D++GVV  VG  V  F+ GD V 
Sbjct: 54  HDIIVRTLAVSLNYRDKLVLETGM-GLDLAFPFVPASDMSGVVEAVGKSVTRFRPGDRVI 112

Query: 172 GDINEKALEGPKQF---------------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPL 216
                  L+G +                 G L+EY  + E      PK+LD  +A+ LP 
Sbjct: 113 STFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPC 172

Query: 217 AIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVC 253
           A  TA+  L E+    AG  ++V  G+GGV    +Q+ 
Sbjct: 173 AGLTAWFALVEKGHLRAGDRVVVQ-GTGGVALFGLQIA 209

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score =  149 bits (379), Expect = 2e-43
 Identities = 57/177 (32%), Positives = 82/177 (46%), Gaps = 13/177 (7%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
                M A  + + GG + L   E V  P   E +VL+KV A+ALN  D  +RQG++   
Sbjct: 18  LYFQSMLAVHFDKPGGPENLYVKE-VAKPSPGEGEVLLKVAASALNRADLMQRQGQYDP- 75

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVK-EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEER 197
                 + G + +G V ++G   +  +K GD          L G    G  A+Y  V E 
Sbjct: 76  PPGASNILGLEASGHVAELGPGCQGHWKIGDTAMA-----LLPG----GGQAQYVTVPEG 126

Query: 198 LLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVC 253
           LL P P+ L   QAA +P A  TA++ L       AG  +L+  G  GVG+  IQ+ 
Sbjct: 127 LLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLT 183

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score =  148 bits (375), Expect = 6e-43
 Identities = 42/172 (24%), Positives = 71/172 (41%), Gaps = 13/172 (7%)

Query: 84  MKAWLYGEYGG-VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
            K   + ++G   DVL+ +    +  +K+++V ++++   +NP D     G +     PL
Sbjct: 5   GKLIQFHKFGNPKDVLQVEY-KNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHR-IPL 62

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           P +PGY+  G+V  VG  V     G  V        L G    G+  EY       + P 
Sbjct: 63  PNIPGYEGVGIVENVGAFVSRELIGKRVL------PLRGE---GTWQEYVKTSADFVVPI 113

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQVC 253
           P ++D   AA + +   TA+     T        +LV      +G L  Q+ 
Sbjct: 114 PDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLS 165

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score =  143 bits (364), Expect = 2e-41
 Identities = 52/175 (29%), Positives = 72/175 (41%), Gaps = 17/175 (9%)

Query: 81  PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK--FKAT 138
           P  MKA       G + L + + V  P    + V++ V AA +   D    +G+   K  
Sbjct: 19  PGSMKAIQAQSLSGPEGLVYTD-VETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKM- 76

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL 198
               P VPG + AGVV     +    K GD V               G  AE  AV    
Sbjct: 77  --EPPFVPGIETAGVVRSAP-EGSGIKPGDRVMAFNF---------IGGYAERVAVAPSN 124

Query: 199 LAPKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQV 252
           + P P  LD  +A  L     T Y    R G   AG+++LVL  +GG+G+  IQ+
Sbjct: 125 ILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQI 179

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score =  144 bits (365), Expect = 2e-41
 Identities = 44/188 (23%), Positives = 69/188 (36%), Gaps = 21/188 (11%)

Query: 79  TVPSEMKAWLYGEYGG------------VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPV 126
           T+PSEMKA L    G                L+    + VP     QVLIKV  A++NP 
Sbjct: 6   TIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGR-IAVPAPGPSQVLIKVNLASINPS 64

Query: 127 DGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK-EFKEGDEVYGDINEKALEGPKQF 185
           D    +G++           G++  G +V  G +   +   G  V          G   +
Sbjct: 65  DVAFIKGQYGQP-RVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVA------FATGLSNW 117

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGV 245
           GS AEY   E     P    +     A + +   TA    +       K+ ++  G+  +
Sbjct: 118 GSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDIVKQEGEKAFVMTAGASQL 177

Query: 246 GSLVIQVC 253
             L+I + 
Sbjct: 178 CKLIIGLA 185

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  144 bits (366), Expect = 1e-40
 Identities = 57/250 (22%), Positives = 92/250 (36%), Gaps = 53/250 (21%)

Query: 56  LGVQASASQAAASSTEAEPTKVG--TVPSEMKAW-------------LYGEYGGVDVLKF 100
           + +       A  S ++ P  +    +P   +A                 +      +  
Sbjct: 1   MSLTVKDILDAIQSPDSTPADIAALPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHL 60

Query: 101 DEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS---------------PLP-T 144
           D+ V VP++   + L+ V+A+++N         +  +T                  LP  
Sbjct: 61  DD-VPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERYGRVSDLAKRHDLPYH 119

Query: 145 VPGYDVAGVVVKVGTQVKEFKEGDEVYG------------------DINEKALEGPKQFG 186
           V G D+AGVV++ G  V  ++ GDEV                    D  ++       FG
Sbjct: 120 VIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFG 179

Query: 187 SLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL---ERTGFSAGKSILVLNGSG 243
            LAE   V+   L PKP +L + +AA   L   TAY  L      G   G ++L+   SG
Sbjct: 180 GLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASG 239

Query: 244 GVGSLVIQVC 253
           G+GS   Q  
Sbjct: 240 GLGSYATQFA 249

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score =  132 bits (333), Expect = 1e-36
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 31/193 (16%)

Query: 84  MKAWLYGEYGG-VDVLKFDEK-VTVPQVKEDQVLIKVVAAALNPVDGKRRQGK------- 134
            +A LY ++G   DVL      +    +  ++V++K + + +NP D  + QG        
Sbjct: 4   AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 63

Query: 135 -FKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTA 193
                 +      G +    V+KVG+ V   + GD V              FG+   +  
Sbjct: 64  TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIP--------SHVNFGTWRTHAL 115

Query: 194 VEERLLAP-----------KPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNG 241
             +                KP  L   Q A + +   TAY  L      + GK   + NG
Sbjct: 116 GNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNG 175

Query: 242 -SGGVGSLVIQVC 253
            +  VG    Q+ 
Sbjct: 176 GTSAVGKYASQIG 188

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score =  124 bits (315), Expect = 2e-34
 Identities = 52/170 (30%), Positives = 75/170 (44%), Gaps = 24/170 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKAW+    GG   L     +  P+ +E +V+++V A  LN  D   R G +       P
Sbjct: 1   MKAWVLKRLGGPLEL---VDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTR-LHPP 56

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
            +PG +V GVV            G          AL      G LAE  AV +  L P P
Sbjct: 57  FIPGMEVVGVVE-----------GRRYA------ALVP---QGGLAERVAVPKGALLPLP 96

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVC 253
           + L   +AA  P++  TAY  L+R     G+ +LV   +G +G+  +QV 
Sbjct: 97  EGLSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVA 146

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score =  124 bits (313), Expect = 5e-34
 Identities = 53/170 (31%), Positives = 74/170 (43%), Gaps = 14/170 (8%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            K   +   GG +VL++ +           V+++  A  LN +D   R G + A    LP
Sbjct: 2   AKRIQFSTVGGPEVLEYVD-FEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA--PFLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV-YGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           +  G + AGVV  VG +V  FK GD V YG             G+ +E   + E  L   
Sbjct: 59  SGLGAEGAGVVEAVGDEVTRFKVGDRVAYGTGP---------LGAYSEVHVLPEANLVKL 109

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQ 251
             ++ F QAA L L   T    L +T     G+ IL    +GGVGSL  Q
Sbjct: 110 ADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQ 159

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score =  123 bits (310), Expect = 2e-33
 Identities = 47/178 (26%), Positives = 79/178 (44%), Gaps = 19/178 (10%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           T+P + K  L  E GG DV+K+++   VP + E+++LIK     +N ++   R+G +   
Sbjct: 4   TIPEQQKVILIDEIGGYDVIKYED-YPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC- 61

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAV-EER 197
               P V G + +G VV  G  V  F+ GD+V       A        + A+Y+ +  + 
Sbjct: 62  --EKPYVLGREASGTVVAKGKGVTNFEVGDQV-------AYISN---STFAQYSKISSQG 109

Query: 198 LLAPKPKNLDFVQ---AAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQ 251
            +   PK     +    A   L + TA            G  +L+   +GGVG ++ Q
Sbjct: 110 PVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQ 167

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score =  121 bits (307), Expect = 3e-33
 Identities = 46/170 (27%), Positives = 71/170 (41%), Gaps = 14/170 (8%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
                + ++GG +VL+  E  T     E+++ ++  A  +N +D   R G +      LP
Sbjct: 2   ATRIEFHKHGGPEVLQAVE-FTPADPAENEIQVENKAIGINFIDTYIRSGLYPP--PSLP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV-YGDINEKALEGPKQFGSLAEYTAVEERLLAPK 202
           +  G + AG+V KVG+ VK  K GD V Y              G+ +    +     A  
Sbjct: 59  SGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSA---------LGAYSSVHNIIADKAAIL 109

Query: 203 PKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQ 251
           P  + F QAA   L   T Y  L +T      +  L    +GGVG +  Q
Sbjct: 110 PAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQ 159

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score =  121 bits (305), Expect = 9e-33
 Identities = 45/173 (26%), Positives = 71/173 (41%), Gaps = 15/173 (8%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK-ATDSPL 142
           + A +  + GG D   ++E V V      QV ++  A  +N +D   R G          
Sbjct: 2   VMAAVIHKKGGPDNFVWEE-VKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEP 60

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEV-YGDINEKALEGPKQFGSLAEYTAVEERLLAP 201
           P V G++ A VV +VG  V +F  G+ V                G+ ++        L  
Sbjct: 61  PIVVGFEAAAVVEEVGPGVTDFTVGERVCTCLPP---------LGAYSQERLYPAEKLIK 111

Query: 202 KPKNLDFVQA--AGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQ 251
            PK+LD      AGL L   TA   L +T     G  +L+   +GG+G +++ 
Sbjct: 112 VPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVP 164

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  119 bits (301), Expect = 5e-32
 Identities = 41/177 (23%), Positives = 65/177 (36%), Gaps = 17/177 (9%)

Query: 79  TVPSEMKAWLYGEYG--GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK 136
              S M+  +         + +       VP   +  +L++     +N  D     G++ 
Sbjct: 19  YFQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYD 78

Query: 137 ATDSPLPTVPGYDVAGVVVKVGTQVKE-FKEGDEVYGDINEKALEGPKQFGSLAEYTAVE 195
            +    P   G++  G VV +G      +  G  V       A       GS AEYT V 
Sbjct: 79  PS-VKPPFDIGFEGIGEVVALGLSASARYTVGQAV-------AYMA---PGSFAEYTVVP 127

Query: 196 ERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQ 251
             +  P P      +   L ++  TAY  L+  G  S GK +LV   +GG G   +Q
Sbjct: 128 ASIATPVPSVKP--EYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQ 182

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  115 bits (289), Expect = 2e-30
 Identities = 54/193 (27%), Positives = 86/193 (44%), Gaps = 27/193 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS--- 140
           M+A    E G    L   +++ VP+ K  QVLIKV AA +   D   RQG+F        
Sbjct: 1   MRAVRLVEIGKPLSL---QEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVED 57

Query: 141 ---PLPTVPGYDVAGVVVKVGTQVKEFKEGDEV---------------YGDIN---EKAL 179
               LP   G+++AG + +VG +V  + +GD V                G+ +       
Sbjct: 58  LGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW 117

Query: 180 EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
            G    G+ AEY  V       K + L+ V+AA L  +  T Y  + +      K++LV+
Sbjct: 118 LGINFDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVV 177

Query: 240 NGSGGVGSLVIQV 252
              GG+G++ +Q+
Sbjct: 178 GAGGGLGTMAVQI 190

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score =  106 bits (266), Expect = 5e-27
 Identities = 33/192 (17%), Positives = 58/192 (30%), Gaps = 37/192 (19%)

Query: 89  YGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQG--------------- 133
             +  G   L  D  +  P    D+VLI++ A+ LNP D     G               
Sbjct: 11  RIKSSGELELSLDS-IDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAER 69

Query: 134 ------------KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEG 181
                       +  A         G + AGVVV+ G+         +        A  G
Sbjct: 70  PIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTV------AAIG 123

Query: 182 PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNG 241
                  ++Y  +        P+       A   +   TA   +E        +++    
Sbjct: 124 G---AMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMRLEGHSALVHTAA 180

Query: 242 SGGVGSLVIQVC 253
           +  +G ++ Q+C
Sbjct: 181 ASNLGQMLNQIC 192

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score =  104 bits (262), Expect = 1e-25
 Identities = 45/166 (27%), Positives = 69/166 (41%), Gaps = 17/166 (10%)

Query: 90  GEYGGVDVLKFDEK-VTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGY 148
              G +D L   ++      + + +V I + AA +N  D     G +     P     G 
Sbjct: 216 TRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMY-----PGVASLGS 270

Query: 149 DVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDF 208
           + AGVVV+ G  V     GD V G I            +       + R++   P    F
Sbjct: 271 EGAGVVVETGPGVTGLAPGDRVMGMIP----------KAFGPLAVADHRMVTRIPAGWSF 320

Query: 209 VQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVC 253
            +AA +P+   TAY  L +  G   G+S+LV + +GGVG   IQ+ 
Sbjct: 321 ARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLA 366

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 98.8 bits (247), Expect = 3e-24
 Identities = 56/208 (26%), Positives = 86/208 (41%), Gaps = 31/208 (14%)

Query: 66  AASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNP 125
             SS     T+     S MKA      G + V      V +P+   D +L+KV A  +  
Sbjct: 6   HHSSGVDLGTENLYFQSMMKAVRLESVGNISV----RNVGIPEPGPDDLLVKVEACGICG 61

Query: 126 VDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDI----------- 174
            D     G+F +T    P   G++  G+VV+ G+ V++   G  + GD            
Sbjct: 62  TDRHLLHGEFPST---PPVTLGHEFCGIVVEAGSAVRDIAPGARITGDPNISCGRCPQCQ 118

Query: 175 --------NEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGL 225
                   N +A+ G  + G  AEY  V  +     P  LD V  A   PLA      G+
Sbjct: 119 AGRVNLCRNLRAI-GIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLAC--CLHGV 175

Query: 226 ERTGFSAGKSILVLNGSGGVGSLVIQVC 253
           + +G  AG ++ +L G G +G L +Q+ 
Sbjct: 176 DLSGIKAGSTVAIL-GGGVIGLLTVQLA 202

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 97.7 bits (244), Expect = 5e-24
 Identities = 51/194 (26%), Positives = 70/194 (36%), Gaps = 29/194 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA  Y E G   V+     +  P     ++L+KV AA L   D              LP
Sbjct: 1   MKAVQYTEIGSEPVV---VDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLP 57

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV-----------------------YGDINEKALE 180
              G++  G V ++G  V  F  GD V                                 
Sbjct: 58  LTLGHEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPP 117

Query: 181 GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERT--GFSAGKSILV 238
           G    GS+AEY  V+         +LD V AA L  A  T Y  + R       G + +V
Sbjct: 118 GLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVV 177

Query: 239 LNGSGGVGSLVIQV 252
           + G GG+G + IQ+
Sbjct: 178 I-GVGGLGHVGIQI 190

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 92.7 bits (231), Expect = 3e-22
 Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 25/190 (13%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA L  ++     +   E V +P+ + ++VLI++  A +   D +  +G        LP
Sbjct: 4   SKAALLKKFSEPLSI---EDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLP 60

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV---------------YGDIN---EKALEGPKQF 185
            + G++ AG +V+VG ++ + K+GD V                G  N    + + G    
Sbjct: 61  IILGHENAGTIVEVG-ELAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTN 119

Query: 186 GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK---SILVLNGS 242
           G  +EY  V+      K  +L  V+AA L  A  T+   + +      K    ++++NG 
Sbjct: 120 GGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVNGI 179

Query: 243 GGVGSLVIQV 252
           GG+    IQ+
Sbjct: 180 GGLAVYTIQI 189

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 90.0 bits (224), Expect = 4e-21
 Identities = 42/203 (20%), Positives = 77/203 (37%), Gaps = 37/203 (18%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAA-----LNPVDGKRRQ 132
                +KA    EY     +   E V  P+++    V++++  A      L+ V G   +
Sbjct: 11  LGVERLKAARLHEYNKPLRI---EDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHE 67

Query: 133 GKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV---------------YGDIN-- 175
                    LP   G++  G + +V   V+  ++GD V                G+    
Sbjct: 68  L----LQPKLPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHC 123

Query: 176 -EKALEGPKQFGSLAEYTAVEERLLAPKPKNLDF---VQAAGLPLAIETAYEGLERTGFS 231
                 G    G  AE+     R +   PK++     V+ A L  A  TAY  +++   +
Sbjct: 124 ENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAART 183

Query: 232 --AGKSILVLNGSGGVGSLVIQV 252
              G  + ++ G GG+G + +Q+
Sbjct: 184 LYPGAYVAIV-GVGGLGHIAVQL 205

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 86.1 bits (213), Expect = 3e-19
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 19/185 (10%)

Query: 74   PTKVGTVPSEMKAWLY--GEYGGVDVLKFDE--KVTVPQVKEDQVLIKVVAAALNPVDGK 129
            P +      + +         G +  +++                L  V   +LN  D  
Sbjct: 1518 PLEQDRPEKQTEHAFVNVLSRGDLSSIRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVM 1577

Query: 130  RRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLA 189
               GK         ++PG  +    +           G  V G +  +         +  
Sbjct: 1578 LATGKL-----SPDSIPGKWLTRDCMLGMEFSGRDASGRRVMGMVPAEG------LATSV 1626

Query: 190  EYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSL 248
                + +      P      +AA +P+   TAY  L  R     G+S+L+ +GSGGVG  
Sbjct: 1627 ---LLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQA 1683

Query: 249  VIQVC 253
             I + 
Sbjct: 1684 AIAIA 1688

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 83.1 bits (206), Expect = 1e-18
 Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 40/200 (20%)

Query: 81  PSEMKA-WLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAAL------NPVDGKRRQG 133
            S+  +  LY      + L+ ++   +P+ KED+VL+++    +          G  R  
Sbjct: 2   ASDNLSAVLYK----QNDLRLEQ-RPIPEPKEDEVLLQMAYVGICGSDVHYYEHG--RIA 54

Query: 134 KFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV---------------YGDINE-- 176
            F   D   P V G++ +G VVKVG  VK  K+GD V                G  N   
Sbjct: 55  DFIVKD---PMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCP 111

Query: 177 --KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAG 233
                  P   G+LA Y           P N+   + A L PL++        R G   G
Sbjct: 112 DLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALLEPLSV--GVHACRRAGVQLG 169

Query: 234 KSILVLNGSGGVGSLVIQVC 253
            ++LV+ G+G +G + +   
Sbjct: 170 TTVLVI-GAGPIGLVSVLAA 188

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score = 83.0 bits (206), Expect = 1e-18
 Identities = 53/194 (27%), Positives = 81/194 (41%), Gaps = 27/194 (13%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           ++P   K  ++ E  G    K    + VP+ K +++LI V  + +   D     G +   
Sbjct: 1   SIPETQKGVIFYESHGKLEYK---DIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLP 57

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV-----YG-----DINEKALEG--PKQF- 185
              LP V G++ AGVVV +G  VK +K GD        G     +  E   E   P    
Sbjct: 58  -VKLPLVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL 116

Query: 186 ------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLERTGFSAGKSIL 237
                 GS  +Y   +    A  P+  D  Q A  P+  A  T Y+ L+     AG  + 
Sbjct: 117 SGYTHDGSFQQYATADAVQAAHIPQGTDLAQVA--PILCAGITVYKALKSANLMAGHWVA 174

Query: 238 VLNGSGGVGSLVIQ 251
           +   +GG+GSL +Q
Sbjct: 175 ISGAAGGLGSLAVQ 188

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 81.5 bits (202), Expect = 3e-18
 Identities = 37/198 (18%), Positives = 73/198 (36%), Gaps = 46/198 (23%)

Query: 84  MKA-WLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATDSP 141
           MK+           +++  E   +P++K +D+V +K+ ++ L   D  R           
Sbjct: 1   MKSVVNDT----DGIVRVAE-SVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAH---Y 52

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALE--------------------- 180
            P   G++ +G +  VG+ V +   GD V       A                       
Sbjct: 53  YPITLGHEFSGYIDAVGSGVDDLHPGDAV-------ACVPLLPCFTCPECLKGFYSQCAK 105

Query: 181 ----GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKS 235
               G ++ G  AEY  V+ + +   P ++     A + P+ +               K+
Sbjct: 106 YDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITV--GLHAFHLAQGCENKN 163

Query: 236 ILVLNGSGGVGSLVIQVC 253
           ++++ G+G +G L IQ  
Sbjct: 164 VIII-GAGTIGLLAIQCA 180

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 81.5 bits (202), Expect = 4e-18
 Identities = 47/197 (23%), Positives = 73/197 (37%), Gaps = 40/197 (20%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKR-RQGKFKATDSPL 142
           M+A         + L   +   VP+    ++L++V AA++   D    +   +       
Sbjct: 1   MRALAK--LAPEEGLTLVD-RPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRP 57

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEG------------------PK- 183
           P V G++ +GVV  VG  V+  + GD V       +LE                      
Sbjct: 58  PLVTGHEFSGVVEAVGPGVRRPQVGDHV-------SLESHIVCHACPACRTGNYHVCLNT 110

Query: 184 QF------GSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSI 236
           Q       G  AEY  V        PK+L F  AA L P     A   +      +GKS+
Sbjct: 111 QILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGN--AVHTVYAGSGVSGKSV 168

Query: 237 LVLNGSGGVGSLVIQVC 253
           L+  G+G +G +   V 
Sbjct: 169 LIT-GAGPIGLMAAMVV 184

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 80.7 bits (200), Expect = 7e-18
 Identities = 51/197 (25%), Positives = 80/197 (40%), Gaps = 38/197 (19%)

Query: 82  SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFK 136
           + MKA +   +G    +    +V VPQ    QV +K+ A+      L+  DG        
Sbjct: 1   AMMKAAVVRAFGAPLTID---EVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVK--- 54

Query: 137 ATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV----------------YGDIN---EK 177
                LP +PG++  G V  VG+ V   KEGD V                 G      ++
Sbjct: 55  ---PTLPFIPGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQ 111

Query: 178 ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLERTGFSAGKS 235
              G    G   EY   +   +   P  + FV+ A  P+  A  T Y+GL+ T    G+ 
Sbjct: 112 QNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIA--PILCAGVTVYKGLKVTDTRPGQW 169

Query: 236 ILVLNGSGGVGSLVIQV 252
           +++  G GG+G + +Q 
Sbjct: 170 VVIS-GIGGLGHVAVQY 185

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 80.3 bits (199), Expect = 1e-17
 Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 31/195 (15%)

Query: 81  PSEMKAW-LYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKR-RQGKFKAT 138
             +M A        G ++     +V VP+    +VLIKV+A ++   D       ++  +
Sbjct: 2   SEKMVAIMKTKPGYGAEL----VEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQS 57

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGD-------------------INEKAL 179
               P + G++VAG VV++G  V+  + GD V  +                    N K  
Sbjct: 58  RIKPPQIMGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIF 117

Query: 180 EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSAGKSILV 238
            G    G  AEY  V  + +   PK++    A    PL    A + +   G  +GKS+L+
Sbjct: 118 -GVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGN--AVDTVLA-GPISGKSVLI 173

Query: 239 LNGSGGVGSLVIQVC 253
             G+G +G L I V 
Sbjct: 174 T-GAGPLGLLGIAVA 187

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 79.2 bits (196), Expect = 2e-17
 Identities = 43/209 (20%), Positives = 75/209 (35%), Gaps = 54/209 (25%)

Query: 79  TVPSEMKA-WLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAAL------NPVDGKRR 131
                  +  ++G       L+ +    +P+   ++VL+++ +  +          G  R
Sbjct: 3   AAKPNNLSLVVHG----PGDLRLEN-YPIPEPGPNEVLLRMHSVGICGSDVHYWEYG--R 55

Query: 132 QGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEG---------- 181
            G F       P V G++ +G V KVG+ VK  K GD V       A+E           
Sbjct: 56  IGNFIVKK---PMVLGHEASGTVEKVGSSVKHLKPGDRV-------AIEPGAPRENDEFC 105

Query: 182 ----------------PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEG 224
                           P   G+L  +           P N+ F + A + PL++      
Sbjct: 106 KMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSV--GIHA 163

Query: 225 LERTGFSAGKSILVLNGSGGVGSLVIQVC 253
             R G + G  +LV  G+G +G + + V 
Sbjct: 164 CRRGGVTLGHKVLVC-GAGPIGMVTLLVA 191

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 79.1 bits (196), Expect = 3e-17
 Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 38/194 (19%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFKAT 138
           MKA +  ++     +K   +V  P +   +VL+++ A       L+   G          
Sbjct: 1   MKAAVVEQFKEPLKIK---EVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVK----- 52

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV----------------YGDIN---EKAL 179
              LP +PG++  G+V +VG  V   K GD V                 G       +  
Sbjct: 53  -PKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKN 111

Query: 180 EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLERTGFSAGKSIL 237
            G    G  AEY       +   P NL F +AA  P+  A  T Y+ L+ TG   G+ + 
Sbjct: 112 AGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAA--PIFCAGVTTYKALKVTGAKPGEWVA 169

Query: 238 VLNGSGGVGSLVIQ 251
           +  G GG+G + +Q
Sbjct: 170 IY-GIGGLGHVAVQ 182

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 75.7 bits (187), Expect = 5e-16
 Identities = 30/191 (15%), Positives = 68/191 (35%), Gaps = 47/191 (24%)

Query: 102 EKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK 156
           ++  +  +    +L+++++A      ++   G+  +          P + G++ AG VV+
Sbjct: 33  KEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPL-------PIILGHEGAGRVVE 85

Query: 157 VGTQVK-----EFKEGDEVYGD---------------------------INEKALEGPKQ 184
           V  + +       K GD +  +                           IN    E P  
Sbjct: 86  VNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHL 145

Query: 185 FGSLAEYTAVE-ERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGF-SAGKSILVLNGS 242
            G  + +  ++ E  +    +  D    A    +  TAY   +      AGK++++  G+
Sbjct: 146 RGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQ-GA 204

Query: 243 GGVGSLVIQVC 253
           G +G   + + 
Sbjct: 205 GPLGLFGVVIA 215

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 47/178 (26%), Positives = 68/178 (38%), Gaps = 19/178 (10%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A +  +  G  +    + +   Q+    V + V  ++LN  D     GK K      P
Sbjct: 1   MQALILEQQDGKTLASV-QHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRH-FP 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV----YGDINEKALEGPKQFGSLAEYTAVEERLL 199
            +PG D AG V    ++   F  G EV    +G        G   +G LAE   V+   L
Sbjct: 59  MIPGIDFAGTVHA--SEDPRFHAGQEVLLTGWG-------VGENHWGGLAERARVKGDWL 109

Query: 200 APKPKNLDFVQAAGLPLAIETA---YEGLERTG-FSAGKSILVLNGSGGVGSLVIQVC 253
              P  L    A  +  A  TA      LE  G       ++V   SGGVGS  + + 
Sbjct: 110 VALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALL 167

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 69.2 bits (170), Expect = 7e-14
 Identities = 43/218 (19%), Positives = 69/218 (31%), Gaps = 53/218 (24%)

Query: 69  STEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAAL----- 123
           ++ A  T +G   +        E         +      ++KE +V + V +  +     
Sbjct: 2   ASSASKTNIGVFTNPQHDLWISEAS----PSLESVQKGEELKEGEVTVAVRSTGICGSDV 57

Query: 124 -NPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEG- 181
                G    G           V G++ AG V+ V   VK  K GD V       A+E  
Sbjct: 58  HFWKHG--CIGPMIVEC---DHVLGHESAGEVIAVHPSVKSIKVGDRV-------AIEPQ 105

Query: 182 -------------------------PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-P 215
                                    P   G L  Y             N+ +   A L P
Sbjct: 106 VICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIG-NMSYENGAMLEP 164

Query: 216 LAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVC 253
           L++  A  GL+R G   G  +L+  G+G +G + +   
Sbjct: 165 LSV--ALAGLQRAGVRLGDPVLIC-GAGPIGLITMLCA 199

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 68.1 bits (167), Expect = 2e-13
 Identities = 48/160 (30%), Positives = 71/160 (44%), Gaps = 18/160 (11%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           + ++   + +D VLIKV  + +N  DG   +          P + G D AG VV   +  
Sbjct: 22  KTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVRE-YPLILGIDAAGTVVS--SND 78

Query: 162 KEFKEGDEV----YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLA 217
             F EGDEV    Y         G  + G L+EY +V    L P P+NL   +A     A
Sbjct: 79  PRFAEGDEVIATSYE-------LGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTA 131

Query: 218 IETA---YEGLERTGFSAGKSILVLNGS-GGVGSLVIQVC 253
             TA      LE+ G S  K  +++ G+ GGVG + + + 
Sbjct: 132 GFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSML 171

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 68.6 bits (168), Expect = 2e-13
 Identities = 35/209 (16%), Positives = 75/209 (35%), Gaps = 46/209 (22%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAA-----LNPVDGKRRQGKFKA 137
           + + ++        ++ +E V  P++ K  +++IKV A       ++             
Sbjct: 32  LGSKVWRYPE----VRVEE-VPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYP 86

Query: 138 TDSPLPTVPGYDVAGVVVKVGTQV------KEFKEGDEVYGD------------------ 173
             +  P   G++ +GVVV+ G +       K F+ G+ V  +                  
Sbjct: 87  GLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNH 146

Query: 174 -INEKALEGPKQFGSLAEYTAVEERLLAPKP-------KNLDFVQAAGL-PLAIETAYEG 224
             N   L G    G+ AEY  V+ +              +  F+  + + P ++      
Sbjct: 147 CENLNEL-GFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVI 205

Query: 225 LERTGFSAGKSILVLNGSGGVGSLVIQVC 253
           +   G   G ++++L G G +G   + + 
Sbjct: 206 VRGGGIRPGDNVVIL-GGGPIGLAAVAIL 233

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 66.9 bits (164), Expect = 4e-13
 Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 18/160 (11%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           + +++  + E  VL++V  +++N  DG       K   +  P VPG D+AGVVV   +Q 
Sbjct: 21  QTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKT-YPFVPGIDLAGVVVS--SQH 77

Query: 162 KEFKEGDEV----YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLA 217
             F+EGDEV    Y         G   FG  +EY  +    L P PK L   +A  +  A
Sbjct: 78  PRFREGDEVIATGYE-------IGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTA 130

Query: 218 IETAYEGL----ERTGFSAGKSILVLNGSGGVGSLVIQVC 253
             TA   +    E         +LV   +GGVGSL + + 
Sbjct: 131 GFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSML 170

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 34/211 (16%), Positives = 63/211 (29%), Gaps = 52/211 (24%)

Query: 84  MKA-WLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDG------KRRQGKF 135
           MKA  +     GV V    + V   ++    ++ I+ +      + G        +    
Sbjct: 1   MKAIIVKPPNAGVQV----KDVDEKKLDSYGKIKIRTIYNG---ICGADREIVNGKLTLS 53

Query: 136 KATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINE------------------- 176
                    V G++  GVV +       F +GD V                         
Sbjct: 54  TLPKGKDFLVLGHEAIGVVEESYH---GFSQGDLVMPVNRRGCGICRNCLVGRPDFCETG 110

Query: 177 --KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAI------------ETAY 222
                   K  G + E+   + + L   PK+++ +     PLA             +   
Sbjct: 111 EFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVP 170

Query: 223 EGLERTGFSAGKSILVLNGSGGVGSLVIQVC 253
                 G    + +LV+ G+G +G L   + 
Sbjct: 171 VWTCDDGTLNCRKVLVV-GTGPIGVLFTLLF 200

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 66.2 bits (162), Expect = 8e-13
 Identities = 41/207 (19%), Positives = 67/207 (32%), Gaps = 52/207 (25%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDG-------KRRQGKFK 136
           MKA       G D     E    P+ +  + L++ +      V G           G  +
Sbjct: 1   MKAIAV--KRGEDRPVVIE-KPRPEPESGEALVRTLRVG---VCGTDHEVIAGGHGGFPE 54

Query: 137 ATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDI---------------------N 175
             D     V G++  GVVV       E +EGD V   +                     +
Sbjct: 55  GED---HLVLGHEAVGVVVDPN--DTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPD 109

Query: 176 EKALE--GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGL-PLAIETAYEGLERTGFSA 232
               E       G ++E+    E+ L   P++        + P++I    + LE    S 
Sbjct: 110 GMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-ELGFLIEPISI--TEKALEHAYASR 166

Query: 233 ------GKSILVLNGSGGVGSLVIQVC 253
                   S  VL G+G +G L + + 
Sbjct: 167 SAFDWDPSSAFVL-GNGSLGLLTLAML 192

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 58.4 bits (142), Expect = 3e-10
 Identities = 34/144 (23%), Positives = 58/144 (40%), Gaps = 35/144 (24%)

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV---------------------------- 170
           +   P +PG+++AG++ +VG  VK+FK GD V                            
Sbjct: 55  EGIYPMIPGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVF 114

Query: 171 -YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLER 227
            Y  + +   +     G  +    V+E  +    KN    + A  PL  A  T Y  L+ 
Sbjct: 115 TYDCL-DSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVA--PLLCAGITTYSPLKF 171

Query: 228 TGFSAGKSILVLNGSGGVGSLVIQ 251
           +  + G  + V  G GG+GS+ ++
Sbjct: 172 SKVTKGTKVGVA-GFGGLGSMAVK 194

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 56.8 bits (138), Expect = 4e-10
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 197 RLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVC 253
            L+ P P  L   +AA   +A  TA+  L E    S G+ +L+ + +GGVG   + + 
Sbjct: 2   DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIA 59

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 55.6 bits (135), Expect = 3e-09
 Identities = 40/194 (20%), Positives = 64/194 (32%), Gaps = 47/194 (24%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           + + + Q + D+VL+KVVA  +   D   R  K+     PLP V G++ +G++  +G  V
Sbjct: 22  QALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV---PLPAVLGHEGSGIIEAIGPNV 78

Query: 162 KEFKEGDEV-----------------------YGDINEKAL--EGPKQF----------- 185
            E + GD V                       +   N      EG               
Sbjct: 79  TELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDH 138

Query: 186 ----GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG--LERTGFSAGKSILVL 239
                S A Y    E       K++       L   I+T   G  +     +   S +  
Sbjct: 139 FFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGA-GACINALKVTPASSFVTW 197

Query: 240 NGSGGVGSLVIQVC 253
            G+G VG   +   
Sbjct: 198 -GAGAVGLSALLAA 210

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 32/142 (22%)

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGD---------------------EVY-----G 172
            S  P VPG++V G VV+VG+ V +F  GD                     E Y      
Sbjct: 60  MSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIW 119

Query: 173 DINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLERTGF 230
             N+  + G    G  A+ T V ++ +   P+ +   QAA  PL  A  T Y  L   G 
Sbjct: 120 SYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAA--PLLCAGVTVYSPLSHFGL 177

Query: 231 -SAGKSILVLNGSGGVGSLVIQ 251
              G    +L G GGVG + ++
Sbjct: 178 KQPGLRGGIL-GLGGVGHMGVK 198

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 36/142 (25%), Positives = 56/142 (39%), Gaps = 32/142 (22%)

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGD---------------------EVY-----G 172
            S  P VPG+++ G V +VG++VK+   GD                     E Y      
Sbjct: 67  FSMYPLVPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMIL 126

Query: 173 DINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLERTGF 230
                  +G   +G  + +    ER +   P N+     A  PL  A  T Y  L+  G 
Sbjct: 127 TYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGA--PLLCAGITVYSPLKYFGL 184

Query: 231 -SAGKSILVLNGSGGVGSLVIQ 251
              GK I ++ G GG+G + ++
Sbjct: 185 DEPGKHIGIV-GLGGLGHVAVK 205

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 34/144 (23%), Positives = 51/144 (35%), Gaps = 35/144 (24%)

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV---------------------------- 170
            +  P VPG+++ G VV VG QV+++  GD V                            
Sbjct: 73  GTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTG 132

Query: 171 -YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLER 227
            Y              G  ++   V ER +       + + A   PL  A  T Y  L  
Sbjct: 133 TYNSPTPDE--PGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVA-PLLCAGITTYSPLRH 189

Query: 228 TGFSAGKSILVLNGSGGVGSLVIQ 251
                GK + V+ G GG+G + I+
Sbjct: 190 WQAGPGKKVGVV-GIGGLGHMGIK 212

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E++ V   K  +V I+V+A  + P D      K KA     P V G++ AG+V  VG  V
Sbjct: 24  EEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA---LFPVVLGHECAGIVESVGPGV 80

Query: 162 KEFKEGDEV 170
             FK GD+V
Sbjct: 81  TNFKPGDKV 89

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 51.4 bits (124), Expect = 8e-08
 Identities = 42/192 (21%), Positives = 67/192 (34%), Gaps = 42/192 (21%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAA-----LNPVDGKRRQGKFKAT 138
           MK +     G V       +   P       +++ +A A     ++ V          A 
Sbjct: 1   MKGFAMLSIGKVGW----IEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEG-------AI 49

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEV----------------------YGDINE 176
                 + G++  G VV+VG++VK+FK GD V                       G +  
Sbjct: 50  GERHNMILGHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAG 109

Query: 177 KALEGPKQFGSLAEYTAVE--ERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGK 234
                 K  G   E+  V   +  LA  PK +    A  +P  + T + G E      G 
Sbjct: 110 WKFSNVKD-GVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTTGFHGAELANIKLGD 168

Query: 235 SILVLNGSGGVG 246
           ++ V+ G G VG
Sbjct: 169 TVCVI-GIGPVG 179

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 51.1 bits (123), Expect = 1e-07
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E +TV   K  +V IK++A+ +   D    +    +     P + G++  GVV  +G  V
Sbjct: 25  ETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS---KFPVILGHEAVGVVESIGAGV 81

Query: 162 KEFKEGDEV 170
              K GD+V
Sbjct: 82  TCVKPGDKV 90

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 47/197 (23%), Positives = 66/197 (33%), Gaps = 53/197 (26%)

Query: 102 EKVTVPQVKEDQVLIKVVAAAL-----NPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK 156
           E++ V   K  +V IK++A A+       + G   +G F       P + G+  AG+V  
Sbjct: 22  EEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF-------PVILGHLGAGIVES 74

Query: 157 VGTQVKEFKEGDEV------------------------YGDINEKAL--EGPKQF----- 185
           VG  V + K GD V                              K L  +G  +F     
Sbjct: 75  VGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGK 134

Query: 186 --------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSI 236
                    + +EYT V +  +A         +   L   I T Y     T     G   
Sbjct: 135 TILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVC 194

Query: 237 LVLNGSGGVGSLVIQVC 253
            V  G GGVG  VI  C
Sbjct: 195 AVF-GLGGVGLAVIMGC 210

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 37/142 (26%), Positives = 55/142 (38%), Gaps = 32/142 (22%)

Query: 139 DSPLPTVPGYDVAGVVVKVGTQV-KEFKEGD---------------------EVY----- 171
           +  +P V G+++ G VVK+G +     K G                      E Y     
Sbjct: 59  NMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFV 118

Query: 172 GDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL--AIETAYEGLERTG 229
              ++   +G    G  A Y  V E  + P P+N+    AA  PL     T Y  L R G
Sbjct: 119 TTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLAA--PLLCGGLTVYSPLVRNG 176

Query: 230 FSAGKSILVLNGSGGVGSLVIQ 251
              GK + ++ G GG+GS+   
Sbjct: 177 CGPGKKVGIV-GLGGIGSMGTL 197

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 47.6 bits (114), Expect = 1e-06
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 102 EKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV 161
           E+V V   K  +V IK+VA  +   D     G       PLP + G++ AG+V  +G  V
Sbjct: 24  EEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT---PLPVIAGHEAAGIVESIGEGV 80

Query: 162 KEFKEGDEV 170
              + GD+V
Sbjct: 81  TTVRPGDKV 89

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 46.5 bits (111), Expect = 3e-06
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 12/74 (16%)

Query: 102 EKVTVPQVKEDQVLIKVVAAAL-----NPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK 156
           E++ V     +++ IK++A  +       +   + +  F       P V G++ AG+V  
Sbjct: 24  EEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGF-------PVVLGHEGAGIVES 76

Query: 157 VGTQVKEFKEGDEV 170
           VG  V EF+ G++V
Sbjct: 77  VGPGVTEFQPGEKV 90

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 16/102 (15%)

Query: 160 QVKEFKEG--DEVYGDINEKALEGPKQ-FGSLAEYTAVEERLL---APKPKNLDFVQAAG 213
            V++F E      Y  +        +Q       Y    +RL        K    V    
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YNVSRLQ 135

Query: 214 LPLAIETAYEGLERTGFSAGKSILVLNGSGGVG--SLVIQVC 253
             L +  A   L           ++++G  G G   + + VC
Sbjct: 136 PYLKLRQALLELRPAKN------VLIDGVLGSGKTWVALDVC 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.98
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.98
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.97
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.97
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.97
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.97
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.97
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.97
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.97
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.96
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.96
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.95
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.82
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.96
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.3
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	93.85
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	93.55
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.59
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	91.28
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	91.22
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	90.84
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	90.38
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	89.76
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	89.75
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	89.14
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	89.11
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	89.01
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	88.73
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.65
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	88.16
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	88.13
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	88.1
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	88.1
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.09
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	87.89
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	87.84
3cxt_A	291	Dehydrogenase with different specificities; rossma	87.78
3rih_A	293	Short chain dehydrogenase or reductase; structural	87.63
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	87.59
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	87.32
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	86.95
3l07_A	285	Bifunctional protein fold; structural genomics, ID	86.9
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	86.68
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	86.37
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	86.32
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	86.25
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	86.09
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	85.92
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	85.49
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	85.42
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	85.09
3nx6_A	95	10KDA chaperonin; bacterial blight, XOO4289, groes	85.08
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	84.88
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	83.41
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	82.99
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	82.24
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	82.22
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	82.05
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	82.02
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	81.27
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	81.21
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	80.75
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	80.27

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=1.5e-36  Score=276.20  Aligned_cols=176  Identities=30%  Similarity=0.498  Sum_probs=161.7

Q ss_pred             CCCCCcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEE
Q 024775           75 TKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVV  154 (262)
Q Consensus        75 ~~~~~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~V  154 (262)
                      ...+.||++|||+++.++|.++.++++ +.+.|++++|||+|||.+++||++|++.+.|.++. ...+|.++|||++|+|
T Consensus        20 ~~~~~~p~~MkA~~~~~~g~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~i~G~E~~G~V   97 (353)
T 4dup_A           20 FQSMSLPQEMRFVDLKSFGGPDVMVIG-KRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPP-PKDASPILGLELSGEI   97 (353)
T ss_dssp             ---CCCCSSEEEEEESSSSSGGGEEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCC-CTTSCSSSCCEEEEEE
T ss_pred             eecCCCChheeEEEEccCCCccceEEE-eccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCCccccccEEEE
Confidence            344568999999999999988889998 89999999999999999999999999999997653 2457899999999999


Q ss_pred             EEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH-HHcCCCCC
Q 024775          155 VKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAG  233 (262)
Q Consensus       155 v~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al-~~~~~~~g  233 (262)
                      +++|++|++|++||+|+++..         .|+|+||++++++.++++|+++++++++.++.++.|||+++ +.+++++|
T Consensus        98 ~~vG~~v~~~~vGdrV~~~~~---------~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g  168 (353)
T 4dup_A           98 VGVGPGVSGYAVGDKVCGLAN---------GGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEG  168 (353)
T ss_dssp             EEECTTCCSCCTTCEEEEECS---------SCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTT
T ss_pred             EEECCCCCCCCCCCEEEEecC---------CCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCC
Confidence            999999999999999998763         69999999999999999999999999999999999999999 56899999


Q ss_pred             CEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          234 KSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++|||+||+|++|++++|+|+.+|++|+
T Consensus       169 ~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi  196 (353)
T 4dup_A          169 ESVLIHGGTSGIGTTAIQLARAFGAEVY  196 (353)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHcCCEEE
Confidence            9999999999999999999999999875

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=5.1e-36  Score=271.65  Aligned_cols=172  Identities=29%  Similarity=0.369  Sum_probs=158.7

Q ss_pred             CCcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEe
Q 024775           78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (262)
Q Consensus        78 ~~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~v  157 (262)
                      ..+|.+|||+++.+++.++.++++ +.+.|++++|||+|||.+++||++|++.++|.++. ..++|.++|||++|+|+++
T Consensus        16 ~~~p~~MkA~~~~~~g~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~G~E~~G~V~~v   93 (342)
T 4eye_A           16 TQGPGSMKAIQAQSLSGPEGLVYT-DVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQL-KMEPPFVPGIETAGVVRSA   93 (342)
T ss_dssp             --CCCEEEEEEECSSSGGGGEEEE-EEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSS-CCCSSBCCCSEEEEEEEEC
T ss_pred             ccCCcceEEEEEecCCCCceeEEE-eCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCCCccceeEEEEEEEE
Confidence            357999999999999988889998 99999999999999999999999999999997653 2467899999999999999


Q ss_pred             CCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH-HHcCCCCCCEE
Q 024775          158 GTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSI  236 (262)
Q Consensus       158 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al-~~~~~~~g~~V  236 (262)
                      |++++ |++||+|+++..         .|+|+||++++++.++++|++++++++++++.++.|||+++ ++.++++|++|
T Consensus        94 G~~v~-~~vGDrV~~~~~---------~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~V  163 (342)
T 4eye_A           94 PEGSG-IKPGDRVMAFNF---------IGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETV  163 (342)
T ss_dssp             CTTSS-CCTTCEEEEECS---------SCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEE
T ss_pred             CCCCC-CCCCCEEEEecC---------CCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEE
Confidence            99999 999999998753         69999999999999999999999999999999999999999 56899999999


Q ss_pred             EEEcCchHHHHHHHHHHHHcCCccC
Q 024775          237 LVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       237 lI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ||+|++|++|++++|+|+.+|++|+
T Consensus       164 lV~Gasg~iG~~~~~~a~~~Ga~Vi  188 (342)
T 4eye_A          164 LVLGAAGGIGTAAIQIAKGMGAKVI  188 (342)
T ss_dssp             EESSTTSHHHHHHHHHHHHTTCEEE
T ss_pred             EEECCCCHHHHHHHHHHHHcCCEEE
Confidence            9999889999999999999999875

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=5.8e-36  Score=273.38  Aligned_cols=186  Identities=28%  Similarity=0.383  Sum_probs=159.0

Q ss_pred             CCCCCCCCcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEE
Q 024775           72 AEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVA  151 (262)
Q Consensus        72 ~~~~~~~~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~v  151 (262)
                      .++....+||++||||+++++ .++.++++ +.+.|++++|||||||.+++||++|++.++|.++. ..++|.++|||++
T Consensus        16 ~~~~~~~~m~~~mkA~~~~~~-~~~~l~~~-e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~P~v~GhE~~   92 (363)
T 3uog_A           16 ENLYFQSMMSKWMQEWSTETV-APHDLKLA-ERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGL-DLAFPFVPASDMS   92 (363)
T ss_dssp             -------CCCSEEEEEEBSCT-TTTCCEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTC-CCCSSBCCCCEEE
T ss_pred             ceeEEeccCchhhEEEEEccC-CCCCcEEE-eeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCCcCcccceE
Confidence            345555568999999999988 33458888 89999999999999999999999999999987653 2567899999999


Q ss_pred             EEEEEeCCCCCCCCCCCEEEEecCcccc---------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccc
Q 024775          152 GVVVKVGTQVKEFKEGDEVYGDINEKAL---------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL  216 (262)
Q Consensus       152 G~Vv~vG~~v~~~~~Gd~V~~~~~~~~~---------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~  216 (262)
                      |+|+++|++|++|++||+|++.....|.               .+....|+|+||++++++.++++|+++++++++.+++
T Consensus        93 G~V~~vG~~v~~~~vGDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~  172 (363)
T 3uog_A           93 GVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPC  172 (363)
T ss_dssp             EEEEEECTTCCSCCTTCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTT
T ss_pred             EEEEEECCCCCCCCCCCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhccc
Confidence            9999999999999999999987422111               2233569999999999999999999999999999999


Q ss_pred             hHHHHHHHH-HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          217 AIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       217 ~~~tA~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++.|||+++ +++++++|++|||+| +|++|++++|+||.+|++|+
T Consensus       173 ~~~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi  217 (363)
T 3uog_A          173 AGLTAWFALVEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVI  217 (363)
T ss_dssp             HHHHHHHHHTTTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence            999999999 568999999999999 99999999999999999875

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1.4e-35  Score=268.98  Aligned_cols=175  Identities=38%  Similarity=0.594  Sum_probs=157.1

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      +|++|||+++.+++++  ++++ +.+.|++++|||+|||.+++||++|++.+.|..+....++|.++|||++|+|+++|+
T Consensus         4 ~~~~mka~~~~~~~~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~   80 (343)
T 3gaz_A            4 TTPTMIAAVVEEANGP--FVLR-KLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGP   80 (343)
T ss_dssp             --CEEEEEEECSTTCC--EEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECT
T ss_pred             CchhheEEEEecCCCc--eEEE-eccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECC
Confidence            5788999999999876  7777 999999999999999999999999999999875433356789999999999999999


Q ss_pred             CCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH-HHcCCCCCCEEEE
Q 024775          160 QVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILV  238 (262)
Q Consensus       160 ~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al-~~~~~~~g~~VlI  238 (262)
                      +|++|++||+|+++....    ....|+|+||++++++.++++|+++++++++.+++++.|||+++ +++++++|++|||
T Consensus        81 ~v~~~~vGdrV~~~~~g~----~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV  156 (343)
T 3gaz_A           81 EVDSFRVGDAVFGLTGGV----GGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLI  156 (343)
T ss_dssp             TCCSCCTTCEEEEECCSS----TTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEE
T ss_pred             CCCCCCCCCEEEEEeCCC----CCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEE
Confidence            999999999999865311    12369999999999999999999999999999999999999999 6789999999999


Q ss_pred             EcCchHHHHHHHHHHHHcCCccC
Q 024775          239 LNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       239 ~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +||+|++|++++|+|+.+|++|+
T Consensus       157 ~Ga~g~iG~~~~q~a~~~Ga~Vi  179 (343)
T 3gaz_A          157 QGGGGGVGHVAIQIALARGARVF  179 (343)
T ss_dssp             ETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             ecCCCHHHHHHHHHHHHCCCEEE
Confidence            99999999999999999999875

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=1.4e-35  Score=267.60  Aligned_cols=170  Identities=27%  Similarity=0.384  Sum_probs=157.5

Q ss_pred             CCcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEe
Q 024775           78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (262)
Q Consensus        78 ~~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~v  157 (262)
                      +.+|.+|||+++++++.++.++++ +.+.|++++|||+|||.+++||++|++.+.|.++   .++|.++|||++|+|+++
T Consensus         3 ~~~p~~mka~~~~~~g~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~---~~~P~i~G~e~~G~V~~v   78 (334)
T 3qwb_A            3 CTIPEQQKVILIDEIGGYDVIKYE-DYPVPSISEEELLIKNKYTGVNYIESYFRKGIYP---CEKPYVLGREASGTVVAK   78 (334)
T ss_dssp             --CCSEEEEEEESSSSSGGGEEEE-EEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSC---CCSSEECCSEEEEEEEEE
T ss_pred             CCCchheEEEEEecCCCCceeEEE-eccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCC---CCCCCccccceEEEEEEE
Confidence            458999999999999998889998 9999999999999999999999999999998765   457899999999999999


Q ss_pred             CCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEec-CCCeEECCCCCCHhh---HhcccchHHHHHHHHHH-cCCCC
Q 024775          158 GTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVE-ERLLAPKPKNLDFVQ---AAGLPLAIETAYEGLER-TGFSA  232 (262)
Q Consensus       158 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~-~~~~~~lP~~~~~~~---aa~l~~~~~tA~~al~~-~~~~~  232 (262)
                      |++|++|++||+|+++.          .|+|+||++++ ++.++++|+++++++   ++.+++.+.|||+++.+ .++++
T Consensus        79 G~~v~~~~~GdrV~~~~----------~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~  148 (334)
T 3qwb_A           79 GKGVTNFEVGDQVAYIS----------NSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKK  148 (334)
T ss_dssp             CTTCCSCCTTCEEEEEC----------SSCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCT
T ss_pred             CCCCCCCCCCCEEEEee----------CCcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCC
Confidence            99999999999999865          69999999999 999999999999999   88888999999999975 68999


Q ss_pred             CCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          233 GKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|||+||+|++|++++|+|+.+|++|+
T Consensus       149 g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi  177 (334)
T 3qwb_A          149 GDYVLLFAAAGGVGLILNQLLKMKGAHTI  177 (334)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            99999999999999999999999999875

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=7.8e-36  Score=267.99  Aligned_cols=174  Identities=36%  Similarity=0.530  Sum_probs=157.4

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCC--CC-CCCCCCCCCCccEEEEEEEeC
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF--KA-TDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~--~~-~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      ++|||+++++++.++.++++ +.+.|++++|||+|||.+++||++|++.++|..  +. ....+|.++|||++|+|+++|
T Consensus         5 ~~Mka~~~~~~g~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG   83 (321)
T 3tqh_A            5 KEMKAIQFDQFGPPKVLKLV-DTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELG   83 (321)
T ss_dssp             CEEEEEEESSSCSGGGEEEE-EEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEEC
T ss_pred             ccceEEEEccCCCcceeEEE-ecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeC
Confidence            46999999999998889998 899999999999999999999999999998831  10 125678999999999999999


Q ss_pred             CCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEE
Q 024775          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILV  238 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI  238 (262)
                      ++|++|++||+|++....     ....|+|+||++++++.++++|+++++++++++++++.|||++++++++++|++|||
T Consensus        84 ~~v~~~~~GdrV~~~~~~-----~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV  158 (321)
T 3tqh_A           84 SDVNNVNIGDKVMGIAGF-----PDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQALNQAEVKQGDVVLI  158 (321)
T ss_dssp             TTCCSCCTTCEEEEECST-----TTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEE
T ss_pred             CCCCCCCCCCEEEEccCC-----CCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEE
Confidence            999999999999987531     123699999999999999999999999999999999999999998899999999999


Q ss_pred             EcCchHHHHHHHHHHHHcCCccC
Q 024775          239 LNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       239 ~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +||+|++|++++|+||.+|++|+
T Consensus       159 ~Ga~G~vG~~a~q~a~~~Ga~vi  181 (321)
T 3tqh_A          159 HAGAGGVGHLAIQLAKQKGTTVI  181 (321)
T ss_dssp             SSTTSHHHHHHHHHHHHTTCEEE
T ss_pred             EcCCcHHHHHHHHHHHHcCCEEE
Confidence            99999999999999999999875

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=1.8e-35  Score=264.87  Aligned_cols=168  Identities=29%  Similarity=0.424  Sum_probs=153.4

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      ++|||+++++  .++.++++ +.+.|++++|||+|||.+++||++|++.++|..+.  .++|.++|||++|+|+++|++|
T Consensus         3 ~tMka~~~~~--~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~p~i~G~e~~G~V~~vG~~v   77 (315)
T 3goh_A            3 EQHQVWAYQT--KTHSVTLN-SVDIPALAADDILVQNQAIGINPVDWKFIKANPIN--WSNGHVPGVDGAGVIVKVGAKV   77 (315)
T ss_dssp             CEEEEEEEET--TTTEEEEE-EEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTC--CCTTCCCCSEEEEEEEEECTTS
T ss_pred             cceEEEEEeC--CCCeeEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCc--CCCCCEeeeeeEEEEEEeCCCC
Confidence            4599999986  33458888 89999999999999999999999999999987653  4678999999999999999999


Q ss_pred             CCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcC
Q 024775          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNG  241 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga  241 (262)
                      ++|++||+|++...      ....|+|+||++++++.++++|+++++++++.++.++.|||++++++++++|++|||+|+
T Consensus        78 ~~~~vGdrV~~~~~------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~Ga  151 (315)
T 3goh_A           78 DSKMLGRRVAYHTS------LKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGF  151 (315)
T ss_dssp             CGGGTTCEEEEECC------TTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECC
T ss_pred             CCCCCCCEEEEeCC------CCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECC
Confidence            99999999998752      234799999999999999999999999999999999999999997789999999999997


Q ss_pred             chHHHHHHHHHHHHcCCccC
Q 024775          242 SGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       242 ~G~vG~~aiqlAk~~Ga~V~  261 (262)
                       |++|++++|+||.+|++|+
T Consensus       152 -G~vG~~a~qlak~~Ga~Vi  170 (315)
T 3goh_A          152 -GAVNNLLTQMLNNAGYVVD  170 (315)
T ss_dssp             -SHHHHHHHHHHHHHTCEEE
T ss_pred             -CHHHHHHHHHHHHcCCEEE
Confidence             9999999999999999875

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=1.6e-35  Score=267.87  Aligned_cols=171  Identities=23%  Similarity=0.364  Sum_probs=157.1

Q ss_pred             cccceeEEEEcccCCc-ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775           80 VPSEMKAWLYGEYGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~-~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      |+.+||+|+++++|++ +.++++ +.+.|++++|||+|||.+++||++|++.++|.++. ..++|.++|||++|+|+++|
T Consensus         1 M~~~mka~~~~~~g~p~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~i~G~E~~G~V~~vG   78 (340)
T 3gms_A            1 MSLHGKLIQFHKFGNPKDVLQVE-YKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAH-RIPLPNIPGYEGVGIVENVG   78 (340)
T ss_dssp             -CCEEEEEEESSCSCHHHHEEEE-EEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTT-TSCSSBCCCSCCEEEEEEEC
T ss_pred             CCcccEEEEEecCCCchheEEEE-ecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCC-CCCCCCcCCcceEEEEEEeC
Confidence            3457999999999987 678888 89999999999999999999999999999997653 25678999999999999999


Q ss_pred             CCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEE
Q 024775          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSIL  237 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~Vl  237 (262)
                      ++|++|++||+|+++..         .|+|+||++++++.++++|+++++++++++++..+|||+++. ++++++|++||
T Consensus        79 ~~v~~~~vGdrV~~~~~---------~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~Vl  149 (340)
T 3gms_A           79 AFVSRELIGKRVLPLRG---------EGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLL  149 (340)
T ss_dssp             TTSCGGGTTCEEEECSS---------SCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEE
T ss_pred             CCCCCCCCCCEEEecCC---------CccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEE
Confidence            99999999999998642         799999999999999999999999999999999999999995 68999999999


Q ss_pred             EEcCchHHHHHHHHHHHHcCCccC
Q 024775          238 VLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       238 I~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |+|++|++|++++|+|+.+|++|+
T Consensus       150 V~Ga~g~iG~~~~~~a~~~Ga~Vi  173 (340)
T 3gms_A          150 VNACGSAIGHLFAQLSQILNFRLI  173 (340)
T ss_dssp             ESSTTSHHHHHHHHHHHHHTCEEE
T ss_pred             EeCCccHHHHHHHHHHHHcCCEEE
Confidence            999888999999999999999875

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=2.4e-35  Score=268.57  Aligned_cols=173  Identities=28%  Similarity=0.400  Sum_probs=156.8

Q ss_pred             CcccceeEEEEcccCCc-ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEe
Q 024775           79 TVPSEMKAWLYGEYGGV-DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g~~-~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~v  157 (262)
                      .||.+||++++.+++.+ +.++++ +.+.|++++|||+|||.+++||++|++.+.|.++.. ..+|.++|||++|+|+++
T Consensus        22 ~m~~~mka~~~~~~g~~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~-~~~P~v~G~E~~G~V~~v   99 (357)
T 1zsy_A           22 SMPARVRALVYGHHGDPAKVVELK-NLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLL-PELPAVGGNEGVAQVVAV   99 (357)
T ss_dssp             CCCCCEEEEEESSSSCHHHHEEEE-EECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCC-CCSSEECCSCCEEEEEEE
T ss_pred             hCchhhEEEEEecCCCccceEEEe-eccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCC-CCCCccccceEEEEEEEe
Confidence            58899999999999886 447777 889999999999999999999999999999876532 357899999999999999


Q ss_pred             CCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEE
Q 024775          158 GTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSI  236 (262)
Q Consensus       158 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~V  236 (262)
                      |++|++|++||+|++...        ..|+|+||++++++.++++|+++++++++++++.+.|||+++.+ +++++|++|
T Consensus       100 G~~v~~~~vGdrV~~~~~--------~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~V  171 (357)
T 1zsy_A          100 GSNVTGLKPGDWVIPANA--------GLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSV  171 (357)
T ss_dssp             CTTCCSCCTTCEEEESSS--------CSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEE
T ss_pred             CCCCCCCCCCCEEEEcCC--------CCccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEE
Confidence            999999999999998642        26999999999999999999999999999999989999999965 799999999


Q ss_pred             EEEcCchHHHHHHHHHHHHcCCccC
Q 024775          237 LVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       237 lI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ||+|++|++|++++|+||.+|++++
T Consensus       172 lV~Ga~G~vG~~aiqlak~~Ga~vi  196 (357)
T 1zsy_A          172 IQNASNSGVGQAVIQIAAALGLRTI  196 (357)
T ss_dssp             EESSTTSHHHHHHHHHHHHHTCEEE
T ss_pred             EEeCCcCHHHHHHHHHHHHcCCEEE
Confidence            9999889999999999999999764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=5.4e-35  Score=265.29  Aligned_cols=176  Identities=23%  Similarity=0.261  Sum_probs=153.9

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      |+.+||+|++.++++.  ++++ +.+.|++++|||+|||.+++||++|++.++|..+.  .++|.++|||++|+|+++|+
T Consensus         1 M~m~mka~~~~~~~~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~p~i~G~E~~G~V~~vG~   75 (348)
T 3two_A            1 MRVQSKGFAIFSKDEH--FKPH-DFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKE--GIYPMIPGHEIAGIIKEVGK   75 (348)
T ss_dssp             CCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSC--CCSSBCCCCCEEEEEEEECT
T ss_pred             CceEEEEEEEccCCCC--CeEE-EeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCC--CCCCeecCcceeEEEEEECC
Confidence            3457999999988754  7777 89999999999999999999999999999998654  46789999999999999999


Q ss_pred             CCCCCCCCCEEEEecCc----c-----------c---cCCCC----------CCCceeeEEEecCCCeEECCCCCCHhhH
Q 024775          160 QVKEFKEGDEVYGDINE----K-----------A---LEGPK----------QFGSLAEYTAVEERLLAPKPKNLDFVQA  211 (262)
Q Consensus       160 ~v~~~~~Gd~V~~~~~~----~-----------~---~~~~~----------~~G~~ae~~~v~~~~~~~lP~~~~~~~a  211 (262)
                      +|++|++||+|++.+..    .           |   ..+..          ..|+|+||++++++.++++|++++++++
T Consensus        76 ~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~a  155 (348)
T 3two_A           76 GVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKV  155 (348)
T ss_dssp             TCCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTSCHHHH
T ss_pred             CCCCCCCCCEEEEeCCcCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhEEECCCCCCHHHh
Confidence            99999999999864210    0           0   01111          2399999999999999999999999999


Q ss_pred             hcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          212 AGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       212 a~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +.+++++.|||+++++.++++|++|||+| +|++|++++|+||.+|++|+
T Consensus       156 a~l~~~~~ta~~~l~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi  204 (348)
T 3two_A          156 APLLCAGITTYSPLKFSKVTKGTKVGVAG-FGGLGSMAVKYAVAMGAEVS  204 (348)
T ss_dssp             GGGGTHHHHHHHHHHHTTCCTTCEEEEES-CSHHHHHHHHHHHHTTCEEE
T ss_pred             hhhhhhHHHHHHHHHhcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEE
Confidence            99999999999999999999999999999 59999999999999999875

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=6.7e-35  Score=265.48  Aligned_cols=172  Identities=31%  Similarity=0.425  Sum_probs=155.7

Q ss_pred             CcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      .+|.+||++++.+++.++.++++ +.+.|++++|||+|||.+++||++|++.+.|.++.. ..+|.++|||++|+|+++|
T Consensus        18 ~~~~~Mka~~~~~~g~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~-~~~p~v~G~E~~G~V~~vG   95 (354)
T 2j8z_A           18 LYFQSMLAVHFDKPGGPENLYVK-EVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPP-PGASNILGLEASGHVAELG   95 (354)
T ss_dssp             ---CEEEEEEESSCSSGGGEEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCC-TTSCSSSCSEEEEEEEEEC
T ss_pred             cchhheeEEEEccCCCccceEEe-ecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCC-CCCCcccceeeEEEEEEEC
Confidence            57888999999999987778888 899999999999999999999999999999876532 3578999999999999999


Q ss_pred             CCC-CCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH-HHcCCCCCCEE
Q 024775          159 TQV-KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSI  236 (262)
Q Consensus       159 ~~v-~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al-~~~~~~~g~~V  236 (262)
                      ++| ++|++||+|+++..         .|+|+||++++++.++++|++++++++++++.++.|||+++ +.+++++|++|
T Consensus        96 ~~v~~~~~vGdrV~~~~~---------~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~v  166 (354)
T 2j8z_A           96 PGCQGHWKIGDTAMALLP---------GGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYV  166 (354)
T ss_dssp             SCC--CCCTTCEEEEECS---------SCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEE
T ss_pred             CCcCCCCCCCCEEEEecC---------CCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEE
Confidence            999 99999999998753         69999999999999999999999999999999999999999 56899999999


Q ss_pred             EEEcCchHHHHHHHHHHHHcCCccC
Q 024775          237 LVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       237 lI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ||+||+|++|++++|+|+..|++|+
T Consensus       167 lV~Ga~ggiG~~~~~~a~~~Ga~Vi  191 (354)
T 2j8z_A          167 LIHAGLSGVGTAAIQLTRMAGAIPL  191 (354)
T ss_dssp             EESSTTSHHHHHHHHHHHHTTCEEE
T ss_pred             EEECCccHHHHHHHHHHHHcCCEEE
Confidence            9999999999999999999999875

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=1.3e-34  Score=265.16  Aligned_cols=175  Identities=29%  Similarity=0.357  Sum_probs=151.8

Q ss_pred             CCcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEe
Q 024775           78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (262)
Q Consensus        78 ~~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~v  157 (262)
                      |.||.+|||++++++++   ++++++.+.|++++|||+|||.+++||++|++.+.+.     ..+|.++|||++|+|+++
T Consensus         6 m~~p~~mkA~v~~~~~~---l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-----~~~p~v~G~e~~G~V~~v   77 (371)
T 3gqv_A            6 FIPPPQQTALTVNDHDE---VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF-----ATPWAFLGTDYAGTVVAV   77 (371)
T ss_dssp             CCCCSCEEEEEECTTSC---EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC----------CCTTSCCCSEEEEEEEEE
T ss_pred             CCCchhceeEEEcCCCc---eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC-----CCCCccCccccEEEEEEe
Confidence            46899999999999876   5665488999999999999999999999999988763     335899999999999999


Q ss_pred             CCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-H-cCC-----
Q 024775          158 GTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-R-TGF-----  230 (262)
Q Consensus       158 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~-~~~-----  230 (262)
                      |++|+.|++||+|++.+. .|..+....|+|+||+++++..++++|+++++++++.+++++.|||+++. . .++     
T Consensus        78 G~~v~~~~~GdrV~~~~~-~~~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~  156 (371)
T 3gqv_A           78 GSDVTHIQVGDRVYGAQN-EMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSA  156 (371)
T ss_dssp             CTTCCSCCTTCEEEEECC-TTCTTCTTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSC
T ss_pred             CCCCCCCCCCCEEEEecc-CCCCCCCCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCcc
Confidence            999999999999998874 33344456799999999999999999999999999999999999999995 4 443     


Q ss_pred             ------CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          231 ------SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       231 ------~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                            ++|++|||+|++|++|++++|+||.+|++|+
T Consensus       157 ~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi  193 (371)
T 3gqv_A          157 DQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPI  193 (371)
T ss_dssp             SSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             ccccccCCCcEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence                  8999999999889999999999999999875

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=6.7e-35  Score=265.92  Aligned_cols=178  Identities=23%  Similarity=0.265  Sum_probs=154.0

Q ss_pred             CCcccceeEEEEcccCCcceEEEEee--ecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEE
Q 024775           78 GTVPSEMKAWLYGEYGGVDVLKFDEK--VTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVV  155 (262)
Q Consensus        78 ~~~p~~~ka~v~~~~g~~~~l~~~~~--~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv  155 (262)
                      |.+|++||||++++++..  ++++ +  .+.|++++|||+|||.+++||++|++.++|.++.  .++|.++|||++|+|+
T Consensus         1 M~~p~~mka~~~~~~~~~--l~~~-~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~p~v~GhE~~G~V~   75 (360)
T 1piw_A            1 MSYPEKFEGIAIQSHEDW--KNPK-KTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN--MKMPLVVGHEIVGKVV   75 (360)
T ss_dssp             CCTTTCEEEEEECCSSST--TSCE-EEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC--CCSSEECCCCEEEEEE
T ss_pred             CCCChheEEEEEecCCCC--eeEE-eccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCC--CCCCcccCcCceEEEE
Confidence            357889999999998743  4455 7  8999999999999999999999999999987543  4578999999999999


Q ss_pred             EeCCCCC-CCCCCCEEEEecC----c-----------cc-----cC------CCCCCCceeeEEEecCCCeEECCCCCCH
Q 024775          156 KVGTQVK-EFKEGDEVYGDIN----E-----------KA-----LE------GPKQFGSLAEYTAVEERLLAPKPKNLDF  208 (262)
Q Consensus       156 ~vG~~v~-~~~~Gd~V~~~~~----~-----------~~-----~~------~~~~~G~~ae~~~v~~~~~~~lP~~~~~  208 (262)
                      ++|++|+ +|++||+|+....    .           .|     ..      +....|+|+||++++++.++++|+++++
T Consensus        76 ~vG~~v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~  155 (360)
T 1piw_A           76 KLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPS  155 (360)
T ss_dssp             EECTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTSCH
T ss_pred             EeCCCCCCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEECCCCCCH
Confidence            9999999 9999999954211    0           00     01      2234699999999999999999999999


Q ss_pred             hhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          209 VQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       209 ~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++++.+++++.|||++++++++++|++|||+|+ |++|++++|+||.+|++|+
T Consensus       156 ~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi  207 (360)
T 1piw_A          156 HLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETY  207 (360)
T ss_dssp             HHHGGGGTHHHHHHHHHHHTTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEE
T ss_pred             HHhhhhhhhHHHHHHHHHHcCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEE
Confidence            999999999999999998899999999999997 9999999999999999874

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.5e-34  Score=263.08  Aligned_cols=173  Identities=38%  Similarity=0.551  Sum_probs=156.0

Q ss_pred             CcccceeEEEEcccCCcceEEE-EeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEe
Q 024775           79 TVPSEMKAWLYGEYGGVDVLKF-DEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g~~~~l~~-~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~v  157 (262)
                      .+|.+|||+++.+++.++.+++ + +.+.|++++|||+|||.+++||++|++.+.|.++. ...+|.++|||++|+|+++
T Consensus        25 ~~~~~Mka~~~~~~g~~~~l~~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~~P~v~G~E~~G~V~~v  102 (351)
T 1yb5_A           25 TGQKLMRAVRVFEFGGPEVLKLRS-DIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR-KPLLPYTPGSDVAGVIEAV  102 (351)
T ss_dssp             ---CEEEEEEESSCSSGGGEEEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSC-CCCSSBCCCSCEEEEEEEE
T ss_pred             cCcceEEEEEEccCCCcceeEEee-ecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCCcCCceeEEEEEEE
Confidence            4577899999999988877888 6 88999999999999999999999999999986542 2457899999999999999


Q ss_pred             CCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEE
Q 024775          158 GTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSI  236 (262)
Q Consensus       158 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~V  236 (262)
                      |++|++|++||+|++...        ..|+|+||++++++.++++|+++++++++.+++++.|||+++. ..++++|++|
T Consensus       103 G~~v~~~~vGdrV~~~~~--------~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~v  174 (351)
T 1yb5_A          103 GDNASAFKKGDRVFTSST--------ISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESV  174 (351)
T ss_dssp             CTTCTTCCTTCEEEESCC--------SSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEE
T ss_pred             CCCCCCCCCCCEEEEeCC--------CCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEE
Confidence            999999999999998542        2599999999999999999999999999999999999999996 6899999999


Q ss_pred             EEEcCchHHHHHHHHHHHHcCCccC
Q 024775          237 LVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       237 lI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ||+|++|++|++++|+|+..|++|+
T Consensus       175 lV~GasggiG~~~~~~a~~~Ga~Vi  199 (351)
T 1yb5_A          175 LVHGASGGVGLAACQIARAYGLKIL  199 (351)
T ss_dssp             EEETCSSHHHHHHHHHHHHTTCEEE
T ss_pred             EEECCCChHHHHHHHHHHHCCCEEE
Confidence            9999899999999999999999875

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=9.6e-35  Score=263.85  Aligned_cols=169  Identities=31%  Similarity=0.532  Sum_probs=155.6

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      ++|||+++++++.++.++++ +.+.|++++|||+|||.+++||++|++.++|.++. ...+|.++|||++|+|+++|++|
T Consensus         2 m~mka~~~~~~g~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~G~e~~G~V~~vG~~v   79 (349)
T 4a27_A            2 MEMRAVVLAGFGGLNKLRLF-RKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDN-PPKTPLVPGFECSGIVEALGDSV   79 (349)
T ss_dssp             CCEEEEEECSSSSGGGEEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS-CCCSSBCCCSEEEEEEEEECTTC
T ss_pred             ceeEEEEEccCCCcceeEEE-ecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCC-CCCCCccccceeEEEEEEeCCCC
Confidence            46999999999988779998 89999999999999999999999999999997653 25678999999999999999999


Q ss_pred             CCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEc
Q 024775          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLN  240 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~G  240 (262)
                      ++|++||+|+++..         .|+|+||++++++.++++|+++++++++.+++++.|||+++. .+++++|++|||+|
T Consensus        80 ~~~~~GdrV~~~~~---------~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G  150 (349)
T 4a27_A           80 KGYEIGDRVMAFVN---------YNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHS  150 (349)
T ss_dssp             CSCCTTCEEEEECS---------SCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESS
T ss_pred             CCCCCCCEEEEecC---------CCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEc
Confidence            99999999998763         699999999999999999999999999999999999999995 58999999999999


Q ss_pred             CchHHHHHHHHHHHHcC-CccC
Q 024775          241 GSGGVGSLVIQVCYYYL-EFFF  261 (262)
Q Consensus       241 a~G~vG~~aiqlAk~~G-a~V~  261 (262)
                      ++|++|++++|+||.+| ++|+
T Consensus       151 a~G~vG~~a~qla~~~g~~~V~  172 (349)
T 4a27_A          151 AGGGVGQAVAQLCSTVPNVTVF  172 (349)
T ss_dssp             TTSHHHHHHHHHHTTSTTCEEE
T ss_pred             CCcHHHHHHHHHHHHcCCcEEE
Confidence            88999999999999995 4553

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=1e-34  Score=261.12  Aligned_cols=168  Identities=30%  Similarity=0.336  Sum_probs=156.3

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      +|||++++++|.++.++++ +.+.|++++|||+|||.+++||++|++.+.|.++.  .++|.++|||++|+|+++|++|+
T Consensus         1 MMkA~~~~~~g~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~p~v~G~e~~G~V~~vG~~v~   77 (325)
T 3jyn_A            1 MAKRIQFSTVGGPEVLEYV-DFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA--PFLPSGLGAEGAGVVEAVGDEVT   77 (325)
T ss_dssp             CEEEEEBSSCSSGGGCEEE-EECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--SSSSBCCCCCEEEEEEEECTTCC
T ss_pred             CcEEEEEecCCCcceeEEe-ecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC--CCCCCCCCceeEEEEEEECCCCC
Confidence            3999999999998889998 89999999999999999999999999999997664  46789999999999999999999


Q ss_pred             CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEEcC
Q 024775          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVLNG  241 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~Ga  241 (262)
                      +|++||+|+....        ..|+|+||++++++.++++|+++++++++.+++...|+|+++.+ .++++|++|||+||
T Consensus        78 ~~~~GdrV~~~~~--------~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga  149 (325)
T 3jyn_A           78 RFKVGDRVAYGTG--------PLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAA  149 (325)
T ss_dssp             SCCTTCEEEESSS--------SSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESST
T ss_pred             CCCCCCEEEEecC--------CCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcC
Confidence            9999999997542        37999999999999999999999999999999999999999975 79999999999999


Q ss_pred             chHHHHHHHHHHHHcCCccC
Q 024775          242 SGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       242 ~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +|++|++++|+|+.+|++|+
T Consensus       150 ~g~iG~~~~~~a~~~Ga~Vi  169 (325)
T 3jyn_A          150 AGGVGSLACQWAKALGAKLI  169 (325)
T ss_dssp             TSHHHHHHHHHHHHHTCEEE
T ss_pred             CcHHHHHHHHHHHHCCCEEE
Confidence            99999999999999999875

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=1.7e-34  Score=261.08  Aligned_cols=174  Identities=28%  Similarity=0.383  Sum_probs=153.9

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      +|||+++++++.+  ++++ +.+.|++++|||+|||.+++||++|++.++|..+.. ..+|.++|||++|+|+++|++|+
T Consensus         2 ~MkA~~~~~~g~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~P~v~G~E~~G~V~~vG~~v~   77 (340)
T 3s2e_A            2 MMKAAVVRAFGAP--LTID-EVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVK-PTLPFIPGHEGVGYVSAVGSGVS   77 (340)
T ss_dssp             EEEEEEBCSTTSC--CEEE-EEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSC-CCSSBCCCSEEEEEEEEECSSCC
T ss_pred             ceEEEEEecCCCC--CEEE-EccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCC-CCCCcccCCcceEEEEEECCCCC
Confidence            5999999998765  6777 899999999999999999999999999999976532 46789999999999999999999


Q ss_pred             CCCCCCEEEEecC-------------------ccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHH
Q 024775          163 EFKEGDEVYGDIN-------------------EKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYE  223 (262)
Q Consensus       163 ~~~~Gd~V~~~~~-------------------~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~  223 (262)
                      +|++||+|+....                   .....+....|+|+||++++++.++++|+++++++++.+++++.|||+
T Consensus        78 ~~~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~  157 (340)
T 3s2e_A           78 RVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYK  157 (340)
T ss_dssp             SCCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCCCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEECCCCCCHHHhhcccchhHHHHH
Confidence            9999999954211                   111123345799999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          224 GLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++++.++++|++|||+| +|++|++++|+||.+|++|+
T Consensus       158 ~l~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi  194 (340)
T 3s2e_A          158 GLKVTDTRPGQWVVISG-IGGLGHVAVQYARAMGLRVA  194 (340)
T ss_dssp             HHHTTTCCTTSEEEEEC-CSTTHHHHHHHHHHTTCEEE
T ss_pred             HHHHcCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence            99889999999999998 59999999999999999875

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=2.8e-34  Score=263.47  Aligned_cols=177  Identities=21%  Similarity=0.209  Sum_probs=155.1

Q ss_pred             CcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      .+|.+|||+++++++++  ++++ +.+.|++++|||||||++++||++|++.++|..+.  ..+|.++|||++|+|+++|
T Consensus         4 ~~~~tmkA~v~~~~~~~--l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~P~v~GhE~~G~V~~vG   78 (378)
T 3uko_A            4 GQVITCKAAVAYEPNKP--LVIE-DVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE--GLFPCILGHEAAGIVESVG   78 (378)
T ss_dssp             TSCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTT--CCSSBCCCCEEEEEEEEEC
T ss_pred             ccceeeEEEEEecCCCc--cEEE-EecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCC--CCCCccCCccceEEEEEeC
Confidence            47889999999999875  6676 89999999999999999999999999999987653  5678999999999999999


Q ss_pred             CCCCCCCCCCEEEEecCccc-------------cC--------C-------------------CCCCCceeeEEEecCCC
Q 024775          159 TQVKEFKEGDEVYGDINEKA-------------LE--------G-------------------PKQFGSLAEYTAVEERL  198 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~-------------~~--------~-------------------~~~~G~~ae~~~v~~~~  198 (262)
                      ++|++|++||+|++.....|             +.        +                   ....|+|+||++++++.
T Consensus        79 ~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~  158 (378)
T 3uko_A           79 EGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVS  158 (378)
T ss_dssp             TTCCSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGG
T ss_pred             CCCCcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhh
Confidence            99999999999997654221             00        0                   11136999999999999


Q ss_pred             eEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          199 LAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       199 ~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      ++++|+++++++++.+++++.|||+++. +.++++|++|||+|+ |++|++++|+||.+|+ +|+
T Consensus       159 ~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi  222 (378)
T 3uko_A          159 VAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGL-GTVGLAVAEGAKTAGASRII  222 (378)
T ss_dssp             EEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECC-SHHHHHHHHHHHHHTCSCEE
T ss_pred             eEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEE
Confidence            9999999999999999999999999985 589999999999995 9999999999999999 564

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-34  Score=259.91  Aligned_cols=178  Identities=28%  Similarity=0.367  Sum_probs=156.3

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      +|.+|||+++++++..  ++++ +.+.|++++|||+|||.+++||++|++.+.|..+. ...+|.++|||++|+|+++|+
T Consensus         2 ~p~~mka~~~~~~g~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~G~E~~G~V~~vG~   77 (347)
T 2hcy_A            2 IPETQKGVIFYESHGK--LEYK-DIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPL-PVKLPLVGGHEGAGVVVGMGE   77 (347)
T ss_dssp             CCSEEEEEEESSTTCC--CEEE-EEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS-CCCSSEECCCEEEEEEEEECT
T ss_pred             CCcccEEEEEeCCCCC--CEEE-EeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCC-CCCCCcccCccceEEEEEECC
Confidence            6788999999998843  6776 89999999999999999999999999999986542 245789999999999999999


Q ss_pred             CCCCCCCCCEEEEecC----cc---cc------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHH
Q 024775          160 QVKEFKEGDEVYGDIN----EK---AL------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIET  220 (262)
Q Consensus       160 ~v~~~~~Gd~V~~~~~----~~---~~------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~t  220 (262)
                      +|++|++||+|++...    ..   |.            .+....|+|+||++++++.++++|+++++++++.+++++.|
T Consensus        78 ~v~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~t  157 (347)
T 2hcy_A           78 NVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGIT  157 (347)
T ss_dssp             TCCSCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHH
T ss_pred             CCCCCcCCCEEEEecCCCCCCCChhhhCCCcccCccccccccCCCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHHH
Confidence            9999999999987421    01   11            12234799999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       221 A~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ||+++++.++++|++|||+|++|++|++++|+|+..|++|+
T Consensus       158 a~~~l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~  198 (347)
T 2hcy_A          158 VYKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVL  198 (347)
T ss_dssp             HHHHHHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEE
Confidence            99999888999999999999889999999999999999874

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=2.9e-34  Score=262.93  Aligned_cols=174  Identities=28%  Similarity=0.423  Sum_probs=153.0

Q ss_pred             CcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      .+|++|||+++++++.   ++++ +.+.|++++|||+|||.+++||++|++.++|.++   ..+|.++|||++|+|+++|
T Consensus        19 ~~p~~mkA~v~~~~~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~---~~~p~v~G~e~~G~V~~vG   91 (370)
T 4ej6_A           19 YFQSMMKAVRLESVGN---ISVR-NVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP---STPPVTLGHEFCGIVVEAG   91 (370)
T ss_dssp             --CCEEEEEEEEETTE---EEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSEECCCSEEEEEEEEC
T ss_pred             ccchheEEEEEecCCc---eEEE-EccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC---CCCCeecCcceEEEEEEEC
Confidence            5889999999998864   7777 9999999999999999999999999999998763   5678999999999999999


Q ss_pred             CCCCCCCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHH
Q 024775          159 TQVKEFKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIET  220 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~t  220 (262)
                      ++|++|++||+|++.....|                  ..+....|+|+||++++++.++++|+++++++++ ++.++.|
T Consensus        92 ~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l~~~~~t  170 (370)
T 4ej6_A           92 SAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCEPLAC  170 (370)
T ss_dssp             TTCCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-GHHHHHH
T ss_pred             CCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEECCCCCCHHHHh-hhhHHHH
Confidence            99999999999998543211                  1233457999999999999999999999999987 6678999


Q ss_pred             HHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       221 A~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      ||++++++++++|++|||+|+ |++|++++|+||.+|+ +|+
T Consensus       171 a~~~l~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi  211 (370)
T 4ej6_A          171 CLHGVDLSGIKAGSTVAILGG-GVIGLLTVQLARLAGATTVI  211 (370)
T ss_dssp             HHHHHHHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEE
Confidence            999998899999999999995 9999999999999999 553

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=4.1e-34  Score=259.39  Aligned_cols=168  Identities=40%  Similarity=0.566  Sum_probs=153.5

Q ss_pred             ceeEEEEcccC---CcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775           83 EMKAWLYGEYG---GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        83 ~~ka~v~~~~g---~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      +|||++++++|   .++.++++ +.+.|++++|||+|||.+++||++|++.+.|.    ...+|.++|||++|+|+++|+
T Consensus         2 ~MkA~~~~~~G~~~~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~----~~~~p~i~G~e~~G~V~~vG~   76 (346)
T 3fbg_A            2 SLKAIGFEQPFKLSDGNLFKTF-NLDIPEPKVHEILVKIQSISVNPVDTKQRLMD----VSKAPRVLGFDAIGVVESVGN   76 (346)
T ss_dssp             CEEEEEBSSCCCGGGCCCCEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHTTSC----CSSSCBCCCCCEEEEEEEECT
T ss_pred             CcEEEEEEeccccCCCceeEec-cccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC----CCCCCcCcCCccEEEEEEeCC
Confidence            69999999998   45678888 99999999999999999999999999998886    246789999999999999999


Q ss_pred             CCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCC------C
Q 024775          160 QVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFS------A  232 (262)
Q Consensus       160 ~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~------~  232 (262)
                      +|++|++||+|++...      ....|+|+||++++++.++++|+++++++++.+++++.|||+++. .++++      +
T Consensus        77 ~v~~~~~GdrV~~~~~------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~  150 (346)
T 3fbg_A           77 EVTMFNQGDIVYYSGS------PDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENE  150 (346)
T ss_dssp             TCCSCCTTCEEEECCC------TTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHT
T ss_pred             CCCcCCCCCEEEEcCC------CCCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCC
Confidence            9999999999998532      234799999999999999999999999999999999999999995 57888      9


Q ss_pred             CCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          233 GKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|||+||+|++|++++|+||.+|++|+
T Consensus       151 g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi  179 (346)
T 3fbg_A          151 GKTLLIINGAGGVGSIATQIAKAYGLRVI  179 (346)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHcCCEEE
Confidence            99999999899999999999999999875

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=3.3e-34  Score=261.38  Aligned_cols=174  Identities=20%  Similarity=0.210  Sum_probs=150.0

Q ss_pred             CcccceeEEEEcccCCcceEEEEeeecCC--------CCCCCeEEEEEEEEecChhhHHhHcCC-CCCCCCCCCCCCCcc
Q 024775           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVP--------QVKEDQVLIKVVAAALNPVDGKRRQGK-FKATDSPLPTVPGYD  149 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g~~~~l~~~~~~~~p--------~~~~~eVlVkV~a~~i~~sD~~~~~g~-~~~~~~~~p~~~G~e  149 (262)
                      .+|.+|||+++.+++.   ++++ +.+.|        ++++|||||||.+++||++|++.+++. ......++|.++|||
T Consensus         4 ~~~~~mka~~~~~~~~---l~~~-~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E   79 (363)
T 3m6i_A            4 SASKTNIGVFTNPQHD---LWIS-EASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHE   79 (363)
T ss_dssp             -CCSCCEEEEECTTCC---EEEE-ECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCE
T ss_pred             CCcccceeEEEeCCCc---EEEE-EecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcc
Confidence            4788899999998766   7777 89999        999999999999999999999988743 233335678999999


Q ss_pred             EEEEEEEeCCCCCCCCCCCEEEEecCccc-------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhh
Q 024775          150 VAGVVVKVGTQVKEFKEGDEVYGDINEKA-------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQ  210 (262)
Q Consensus       150 ~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~-------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~  210 (262)
                      ++|+|+++|++|++|++||+|++.....|                   .+.....|+|+||++++++.++++|+ +++++
T Consensus        80 ~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~  158 (363)
T 3m6i_A           80 SAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYEN  158 (363)
T ss_dssp             EEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHH
T ss_pred             eEEEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCC-CCHHH
Confidence            99999999999999999999998532111                   11112579999999999999999999 99999


Q ss_pred             HhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          211 AAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       211 aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      ++.+ .++.|||++++++++++|++|||+|+ |++|++++|+||.+|++
T Consensus       159 aa~~-~~~~ta~~~l~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~  205 (363)
T 3m6i_A          159 GAML-EPLSVALAGLQRAGVRLGDPVLICGA-GPIGLITMLCAKAAGAC  205 (363)
T ss_dssp             HHHH-HHHHHHHHHHHHHTCCTTCCEEEECC-SHHHHHHHHHHHHTTCC
T ss_pred             HHhh-hHHHHHHHHHHHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCC
Confidence            9977 57889999998899999999999995 99999999999999997

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=6.5e-34  Score=260.75  Aligned_cols=176  Identities=35%  Similarity=0.578  Sum_probs=156.3

Q ss_pred             CcccceeEEEEcccCCcceEEE-EeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCC-------------CCCCCCC
Q 024775           79 TVPSEMKAWLYGEYGGVDVLKF-DEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFK-------------ATDSPLP  143 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g~~~~l~~-~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~-------------~~~~~~p  143 (262)
                      .++.+||+|++.++|.++.+++ + +.+.|++ ++|||+|||.+++||++|++.+.|..+             ....++|
T Consensus        17 ~~~~~mka~~~~~~g~~~~l~~~~-~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P   95 (375)
T 2vn8_A           17 NLYFQSMAWVIDKYGKNEVLRFTQ-NMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFP   95 (375)
T ss_dssp             -CCCCEEEEEBSSCCSGGGCEEEE-EECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCS
T ss_pred             ccCccceeEEeccCCCccceEEec-cccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCC
Confidence            4788899999999988777888 6 8899985 999999999999999999999988532             1112378


Q ss_pred             CCCCccEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHH
Q 024775          144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYE  223 (262)
Q Consensus       144 ~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~  223 (262)
                      .++|||++|+|+++|++|++|++||+|++....      ...|+|+||++++++.++++|+++++++++.+++++.|||+
T Consensus        96 ~v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~------~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~  169 (375)
T 2vn8_A           96 LTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPP------WKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWS  169 (375)
T ss_dssp             BCCCCEEEEEEEEECTTCCSCCTTCEEEEECCT------TSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHH
T ss_pred             cccceeeeEEEEEeCCCCCCCCCCCEEEEecCC------CCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHH
Confidence            999999999999999999999999999987531      23699999999999999999999999999999999999999


Q ss_pred             HHH-HcC----CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          224 GLE-RTG----FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       224 al~-~~~----~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++. .++    +++|++|||+||+|++|++++|+||.+|++|+
T Consensus       170 al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi  212 (375)
T 2vn8_A          170 AINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVT  212 (375)
T ss_dssp             HHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEE
Confidence            995 578    99999999999999999999999999999875

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=7.6e-35  Score=264.40  Aligned_cols=175  Identities=25%  Similarity=0.257  Sum_probs=152.5

Q ss_pred             CCcccceeEEEEc--cc-CCcceEEEEeee---------cCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCC
Q 024775           78 GTVPSEMKAWLYG--EY-GGVDVLKFDEKV---------TVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTV  145 (262)
Q Consensus        78 ~~~p~~~ka~v~~--~~-g~~~~l~~~~~~---------~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~  145 (262)
                      |.+|.+|||++++  ++ +.++.++++ +.         +.|++++|||+|||++++||++|++.++|.++. ..++|.+
T Consensus         5 m~~p~~mka~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~~p~v   82 (349)
T 3pi7_A            5 MTIPSEMKALLLVGDGYTKTPSGSALE-AMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQ-PRVKGRP   82 (349)
T ss_dssp             CCCCSEEEEEEECSCBSCSSCCCSCCC-CSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSS-CBCTTSB
T ss_pred             CCCchhheEEEEEccccCCCcccceEE-EeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCC-CCCCCCC
Confidence            4689999999999  55 234446666 66         999999999999999999999999999997653 2567899


Q ss_pred             CCccEEEEEEEeCCCC-CCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          146 PGYDVAGVVVKVGTQV-KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       146 ~G~e~vG~Vv~vG~~v-~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      +|||++|+|+++|++| ++|++||+|++...      ....|+|+||++++++.++++|+++++++++.+++..+|||++
T Consensus        83 ~G~E~~G~V~~vG~~v~~~~~vGdrV~~~~g------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~  156 (349)
T 3pi7_A           83 AGFEGVGTIVAGGDEPYAKSLVGKRVAFATG------LSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAM  156 (349)
T ss_dssp             CCSEEEEEEEEECSSHHHHHHTTCEEEEECT------TSSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHH
T ss_pred             ccceEEEEEEEECCCccCCCCCCCEEEEecc------CCCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHH
Confidence            9999999999999999 99999999998752      2347999999999999999999999999999999999999988


Q ss_pred             HHHcCCCCC-CEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          225 LERTGFSAG-KSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       225 l~~~~~~~g-~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +++++ ++| ++|||+||+|++|++++|+||.+|++|+
T Consensus       157 ~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi  193 (349)
T 3pi7_A          157 FDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPI  193 (349)
T ss_dssp             HHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            77777 767 7999999999999999999999999875

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8.4e-34  Score=255.09  Aligned_cols=168  Identities=26%  Similarity=0.304  Sum_probs=152.5

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      +|||+++++++.++.++++ +.+.|++++|||+|||.+++||++|++.+.|.++.  ..+|.++|||++|+|+++|++|+
T Consensus         1 ~Mka~~~~~~g~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~p~v~G~E~~G~V~~vG~~v~   77 (327)
T 1qor_A            1 MATRIEFHKHGGPEVLQAV-EFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP--PSLPSGLGTEAAGIVSKVGSGVK   77 (327)
T ss_dssp             -CEEEEBSSCCSGGGCEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--SSSSBCCCSCEEEEEEEECTTCC
T ss_pred             CcEEEEEcCCCChhheEEe-ccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC--CCCCCCCCceeEEEEEEECCCCC
Confidence            3899999999887778888 89999999999999999999999999999987642  35789999999999999999999


Q ss_pred             CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcC
Q 024775          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNG  241 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga  241 (262)
                      +|++||+| +.+.       ...|+|+||++++++.++++|+++++++++.++.++.|||+++. ..++++|++|||+||
T Consensus        78 ~~~~GdrV-~~~g-------~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga  149 (327)
T 1qor_A           78 HIKAGDRV-VYAQ-------SALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAA  149 (327)
T ss_dssp             SCCTTCEE-EESC-------CSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESST
T ss_pred             CCCCCCEE-EECC-------CCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECC
Confidence            99999999 4431       12599999999999999999999999999999999999999997 689999999999999


Q ss_pred             chHHHHHHHHHHHHcCCccC
Q 024775          242 SGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       242 ~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +|++|++++|+|+..|++|+
T Consensus       150 ~ggiG~~~~~~a~~~G~~V~  169 (327)
T 1qor_A          150 AGGVGLIACQWAKALGAKLI  169 (327)
T ss_dssp             TBHHHHHHHHHHHHHTCEEE
T ss_pred             CCHHHHHHHHHHHHcCCEEE
Confidence            99999999999999999875

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1e-33  Score=258.05  Aligned_cols=178  Identities=21%  Similarity=0.300  Sum_probs=150.1

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCC-CCCCeEEEEEEEEecChhhHHhHcCCCCC-CCCCCCCCCCccEEEEEEEe
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQ-VKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKV  157 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~-~~~~eVlVkV~a~~i~~sD~~~~~g~~~~-~~~~~p~~~G~e~vG~Vv~v  157 (262)
                      .|.+||++++++++..  ++++ +.+.|+ +++|||+|||.+++||++|++.++|.++. ....+|.++|||++|+|+++
T Consensus        12 ~~~~mka~~~~~~g~~--l~~~-~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~v   88 (359)
T 1h2b_A           12 GVERLKAARLHEYNKP--LRIE-DVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEV   88 (359)
T ss_dssp             -----CEEEESSTTSC--CEEE-CCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEE
T ss_pred             ChhhceEEEEecCCCC--cEEE-EccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEE
Confidence            4678999999998743  6677 889999 99999999999999999999999986531 01357899999999999999


Q ss_pred             CCCCCCCCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHh---cccc
Q 024775          158 GTQVKEFKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAA---GLPL  216 (262)
Q Consensus       158 G~~v~~~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa---~l~~  216 (262)
                      |++|++|++||+|++.....|                  ..+....|+|+||++++++.++++|+++++++++   .+++
T Consensus        89 G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~  168 (359)
T 1h2b_A           89 AEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLAD  168 (359)
T ss_dssp             CTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGGGT
T ss_pred             CCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEECCCCCCHHHHhhccchhh
Confidence            999999999999987642211                  1122347999999999999999999999999998   7888


Q ss_pred             hHHHHHHHHHH--cCCCCCCEEEEEcCchHHHHHHHHHHHHc-CCccC
Q 024775          217 AIETAYEGLER--TGFSAGKSILVLNGSGGVGSLVIQVCYYY-LEFFF  261 (262)
Q Consensus       217 ~~~tA~~al~~--~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-Ga~V~  261 (262)
                      ++.|||+++.+  +++++|++|||+|+ |++|++++|+||.+ |++|+
T Consensus       169 ~~~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi  215 (359)
T 1h2b_A          169 AGITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVI  215 (359)
T ss_dssp             HHHHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEE
T ss_pred             hHHHHHHHHHhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEE
Confidence            99999999987  89999999999996 99999999999999 99874

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=6.3e-34  Score=260.08  Aligned_cols=173  Identities=35%  Similarity=0.456  Sum_probs=153.9

Q ss_pred             cccceeEEEEccc---CCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEE
Q 024775           80 VPSEMKAWLYGEY---GGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (262)
Q Consensus        80 ~p~~~ka~v~~~~---g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~  156 (262)
                      ++++|||++++++   +.++.++++ +.+.|++++|||+|||.+++||++|++.+.|..+.  ..+|.++|||++|+|++
T Consensus        19 ~m~~MkA~~~~~~~~~~~~~~l~~~-~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~p~v~G~E~~G~V~~   95 (363)
T 4dvj_A           19 YFQSMKAVGYNKPAPITDDASLLDI-ELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPD--GTDWKVIGYDAAGIVSA   95 (363)
T ss_dssp             CCCEEEEEEBSSCCCTTSTTSSEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC----CCSBCCCCCEEEEEEE
T ss_pred             hhheeEEEEEeccCCCCCCceEEEe-ecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCC--CCCCCcccceeEEEEEE
Confidence            3466999999988   556678888 89999999999999999999999999999987653  46789999999999999


Q ss_pred             eCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCC----
Q 024775          157 VGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFS----  231 (262)
Q Consensus       157 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~----  231 (262)
                      +|++|++|++||+|++...      ....|+|+||++++++.++++|+++++++++.+++++.|||+++. ..+++    
T Consensus        96 vG~~v~~~~vGdrV~~~~~------~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~  169 (363)
T 4dvj_A           96 VGPDVTLFRPGDEVFYAGS------IIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVP  169 (363)
T ss_dssp             ECTTCCSCCTTCEEEECCC------TTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCT
T ss_pred             eCCCCCCCCCCCEEEEccC------CCCCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcC
Confidence            9999999999999997531      234799999999999999999999999999999999999999995 57888    


Q ss_pred             -CCCEEEEEcCchHHHHHHHHHHHH-cCCccC
Q 024775          232 -AGKSILVLNGSGGVGSLVIQVCYY-YLEFFF  261 (262)
Q Consensus       232 -~g~~VlI~Ga~G~vG~~aiqlAk~-~Ga~V~  261 (262)
                       +|++|||+||+|++|++++|+||. .|++|+
T Consensus       170 ~~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi  201 (363)
T 4dvj_A          170 GAAPAILIVGGAGGVGSIAVQIARQRTDLTVI  201 (363)
T ss_dssp             TSEEEEEEESTTSHHHHHHHHHHHHHCCSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHhcCCEEE
Confidence             999999999999999999999998 488775

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=6.3e-34  Score=259.43  Aligned_cols=171  Identities=22%  Similarity=0.263  Sum_probs=152.4

Q ss_pred             ccceeEEEEcccCCc-ceEEEEeeecCCCCC--CCeEEEEEEEEecChhhHHhHcCCCCCCCCCCC---------CCCCc
Q 024775           81 PSEMKAWLYGEYGGV-DVLKFDEKVTVPQVK--EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP---------TVPGY  148 (262)
Q Consensus        81 p~~~ka~v~~~~g~~-~~l~~~~~~~~p~~~--~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p---------~~~G~  148 (262)
                      |.+||++++++++++ +.++++ +.+.|++.  +|||+|||.+++||++|++.++|.++.. ..+|         .++||
T Consensus         1 ~~~mka~~~~~~g~~~~~l~~~-~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~P~~~~~~~p~~i~G~   78 (364)
T 1gu7_A            1 MITAQAVLYTQHGEPKDVLFTQ-SFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSK-PAKTTGFGTTEPAAPCGN   78 (364)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEE-EEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCC-CCCBSTTCCSSCBEECCS
T ss_pred             CceEEEEEeccCCCchheeEEe-eccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCC-CCCCccccccCcccccCc
Confidence            356999999999875 457777 88888776  9999999999999999999999876531 3455         89999


Q ss_pred             cEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCC-----------CCCHhhHhcccch
Q 024775          149 DVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPK-----------NLDFVQAAGLPLA  217 (262)
Q Consensus       149 e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~-----------~~~~~~aa~l~~~  217 (262)
                      |++|+|+++|++|++|++||+|++...        ..|+|+||++++++.++++|+           +++++++++++++
T Consensus        79 E~~G~V~~vG~~v~~~~vGdrV~~~~~--------~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~  150 (364)
T 1gu7_A           79 EGLFEVIKVGSNVSSLEAGDWVIPSHV--------NFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVN  150 (364)
T ss_dssp             CCEEEEEEECTTCCSCCTTCEEEESSS--------CCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTH
T ss_pred             eeEEEEEEeCCCCCcCCCCCEEEecCC--------CCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhcccc
Confidence            999999999999999999999998642        269999999999999999998           8999999999999


Q ss_pred             HHHHHHHHHH-cCCCCC-CEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          218 IETAYEGLER-TGFSAG-KSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       218 ~~tA~~al~~-~~~~~g-~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +.|||+++.+ .++++| ++|||+|++|++|++++|+||.+|++|+
T Consensus       151 ~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi  196 (364)
T 1gu7_A          151 PLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSI  196 (364)
T ss_dssp             HHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEE
T ss_pred             HHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEE
Confidence            9999999987 589999 9999999889999999999999999864

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=2.1e-33  Score=257.08  Aligned_cols=175  Identities=23%  Similarity=0.256  Sum_probs=152.0

Q ss_pred             CcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      ..|.+|||+++.+++++  ++++ +.+.|++++|||||||.+++||++|++.++|..+   ..+|.++|||++|+|+++|
T Consensus         5 ~~p~~mka~~~~~~g~~--l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~P~v~GhE~~G~V~~vG   78 (373)
T 1p0f_A            5 GKDITCKAAVAWEPHKP--LSLE-TITVAPPKAHEVRIKILASGICGSDSSVLKEIIP---SKFPVILGHEAVGVVESIG   78 (373)
T ss_dssp             TSCEEEEEEEBSSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSBCCCCCEEEEEEEEC
T ss_pred             CCcceeEEEEEEcCCCC--eeEE-EeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC---CCCCcccCcCceEEEEEEC
Confidence            46788999999998754  6666 8899999999999999999999999999998754   4578999999999999999


Q ss_pred             CCCCCCCCCCEEEEecCccc-------------cC--------CC------------------CCCCceeeEEEecCCCe
Q 024775          159 TQVKEFKEGDEVYGDINEKA-------------LE--------GP------------------KQFGSLAEYTAVEERLL  199 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~-------------~~--------~~------------------~~~G~~ae~~~v~~~~~  199 (262)
                      ++|++|++||+|++.....|             +.        +.                  ...|+|+||++++++.+
T Consensus        79 ~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  158 (373)
T 1p0f_A           79 AGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAV  158 (373)
T ss_dssp             TTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSE
T ss_pred             CCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEEchhhE
Confidence            99999999999998642211             00        10                  12489999999999999


Q ss_pred             EECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          200 APKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       200 ~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      +++|++++++ ++.+++++.|||+++. ++++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus       159 ~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi  220 (373)
T 1p0f_A          159 AKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFG-LGGVGFSAIVGCKAAGASRII  220 (373)
T ss_dssp             EEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEE
T ss_pred             EECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            9999999999 9999999999999985 58999999999999 69999999999999999 563

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.1e-33  Score=256.16  Aligned_cols=176  Identities=36%  Similarity=0.512  Sum_probs=155.5

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||+++++++.++.++++ +.+.|++++|||+|||.+++||++|++.+.|.++. ...+|.++|||++|+|+++|++|++
T Consensus         1 Mka~~~~~~g~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~G~E~~G~V~~vG~~v~~   78 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVA-DLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASP-KLPLPHVLGADGSGVVDAVGPGVEG   78 (343)
T ss_dssp             CEEEEECSSSSGGGEEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSST-TCCSSEECCSEEEEEEEEECSSCCS
T ss_pred             CeEEEEecCCCCceEEEE-ecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCC-CCCCCcccccceEEEEEEECCCCCC
Confidence            899999999987778888 89999999999999999999999999999986542 1357899999999999999999999


Q ss_pred             CCCCCEEEEecCcccc------------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHH
Q 024775          164 FKEGDEVYGDINEKAL------------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGL  225 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~------------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al  225 (262)
                      |++||+|+......|.                  .+....|+|+||++++++.++++|+++++++++.++.++.|||+++
T Consensus        79 ~~vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~al  158 (343)
T 2eih_A           79 FAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMV  158 (343)
T ss_dssp             CCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCcccchhhccCcccccccccccCcCCCccceeEEEeChHHeEECCCCCCHHHHhhchhhHHHHHHHH
Confidence            9999999954321110                  1133469999999999999999999999999999999999999999


Q ss_pred             HH-cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          226 ER-TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       226 ~~-~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+ +++++|++|||+|++|++|++++|+|+.+|++|+
T Consensus       159 ~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi  195 (343)
T 2eih_A          159 VDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVI  195 (343)
T ss_dssp             TTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEE
T ss_pred             HHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence            76 6999999999999889999999999999999874

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=2.2e-33  Score=256.84  Aligned_cols=177  Identities=25%  Similarity=0.264  Sum_probs=153.2

Q ss_pred             CcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      ..|.+|||+++.+++..  ++++ +.+.|++++|||+|||.+++||++|++.+.|..+.  ..+|.++|||++|+|+++|
T Consensus         2 ~~p~~mkA~~~~~~~~~--l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~P~v~GhE~~G~V~~vG   76 (373)
T 2fzw_A            2 NEVIKCKAAVAWEAGKP--LSIE-EIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPE--GCFPVILGHLGAGIVESVG   76 (373)
T ss_dssp             CCCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTT--CCSSBCCCCEEEEEEEEEC
T ss_pred             CCccceEEEEEecCCCC--cEEE-EeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCC--CCCCccccccccEEEEEEC
Confidence            35778999999998754  6666 88999999999999999999999999999987543  4578999999999999999


Q ss_pred             CCCCCCCCCCEEEEecCccc-------------cC--------CC------------------CCCCceeeEEEecCCCe
Q 024775          159 TQVKEFKEGDEVYGDINEKA-------------LE--------GP------------------KQFGSLAEYTAVEERLL  199 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~-------------~~--------~~------------------~~~G~~ae~~~v~~~~~  199 (262)
                      ++|++|++||+|++.....|             +.        +.                  ...|+|+||++++++.+
T Consensus        77 ~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  156 (373)
T 2fzw_A           77 EGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISV  156 (373)
T ss_dssp             TTCCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGE
T ss_pred             CCCCCCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEEEchhhe
Confidence            99999999999998642211             00        10                  12589999999999999


Q ss_pred             EECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          200 APKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       200 ~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      +++|+++++++++.+++++.|||+++. +.++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus       157 ~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~avqla~~~Ga~~Vi  219 (373)
T 2fzw_A          157 AKIDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFG-LGGVGLAVIMGCKVAGASRII  219 (373)
T ss_dssp             EECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEE
T ss_pred             EECCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            999999999999999999999999985 58999999999999 69999999999999999 563

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.8e-33  Score=255.59  Aligned_cols=176  Identities=24%  Similarity=0.368  Sum_probs=147.6

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHc-CCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQ-GKFKATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~-g~~~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      |+++|||+++++++.   ++++ +.+.|++++|||+|||.+++||++|++.+. +..+....++|.++|||++|+|+++|
T Consensus         1 m~~~mka~~~~~~~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG   76 (352)
T 1e3j_A            1 MASDNLSAVLYKQND---LRLE-QRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVG   76 (352)
T ss_dssp             ---CCEEEEEEETTE---EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEEC
T ss_pred             CcccCEEEEEEcCCc---EEEE-EecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeC
Confidence            345699999998653   7777 889999999999999999999999999887 43322224578999999999999999


Q ss_pred             CCCCCCCCCCEEEEecCccc------c------------CC-CCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHH
Q 024775          159 TQVKEFKEGDEVYGDINEKA------L------------EG-PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE  219 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~------~------------~~-~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~  219 (262)
                      ++|++|++||+|++.....|      .            .+ ....|+|+||++++++.++++|+++++++++.+ .++.
T Consensus        77 ~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~  155 (352)
T 1e3j_A           77 KNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALL-EPLS  155 (352)
T ss_dssp             TTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTH-HHHH
T ss_pred             CCCCCCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhh-chHH
Confidence            99999999999998632111      0            01 123699999999999999999999999998865 5778


Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       220 tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |||++++++++++|++|||+| +|++|++++|+||.+|++|+
T Consensus       156 ta~~al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~Vi  196 (352)
T 1e3j_A          156 VGVHACRRAGVQLGTTVLVIG-AGPIGLVSVLAAKAYGAFVV  196 (352)
T ss_dssp             HHHHHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence            999999889999999999999 59999999999999999864

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=2.3e-33  Score=254.16  Aligned_cols=173  Identities=30%  Similarity=0.301  Sum_probs=153.1

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||+++++++++  ++++ +.+.|++++|||+|||++++||++|++.++|..+..+.++|.++|||++|+|+++|++|++
T Consensus         1 MkA~~~~~~g~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   77 (345)
T 3jv7_A            1 MKAVQYTEIGSE--PVVV-DIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTG   77 (345)
T ss_dssp             CEEEEECSTTSC--CEEE-ECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCS
T ss_pred             CeEEEEcCCCCc--eEEE-EecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCC
Confidence            899999999876  6676 8999999999999999999999999999999766545678999999999999999999999


Q ss_pred             CCCCCEEEEecCccc-------------c----------CCCCCCCceeeEEEec-CCCeEECCCCCCHhhHhcccchHH
Q 024775          164 FKEGDEVYGDINEKA-------------L----------EGPKQFGSLAEYTAVE-ERLLAPKPKNLDFVQAAGLPLAIE  219 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~-------------~----------~~~~~~G~~ae~~~v~-~~~~~~lP~~~~~~~aa~l~~~~~  219 (262)
                      |++||+|++.....|             +          .+....|+|+||++++ ++.++++|+ +++++++.+++++.
T Consensus        78 ~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~~  156 (345)
T 3jv7_A           78 FGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAGL  156 (345)
T ss_dssp             CCTTCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTTH
T ss_pred             CCCCCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhHH
Confidence            999999998643211             1          2334579999999999 899999999 99999999999999


Q ss_pred             HHHHHHHHc--CCCCCCEEEEEcCchHHHHHHHHHHHHc-CCccC
Q 024775          220 TAYEGLERT--GFSAGKSILVLNGSGGVGSLVIQVCYYY-LEFFF  261 (262)
Q Consensus       220 tA~~al~~~--~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-Ga~V~  261 (262)
                      |||+++.+.  ++++|++|+|+|+ |++|++++|+||.+ |++|+
T Consensus       157 ta~~~l~~~~~~~~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi  200 (345)
T 3jv7_A          157 TPYHAISRVLPLLGPGSTAVVIGV-GGLGHVGIQILRAVSAARVI  200 (345)
T ss_dssp             HHHHHHHTTGGGCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEE
T ss_pred             HHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEE
Confidence            999999875  8999999999995 99999999999999 66664

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=3.6e-33  Score=252.63  Aligned_cols=172  Identities=22%  Similarity=0.277  Sum_probs=150.0

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||+++...++ ..++++ +.++|+|++|||||||.++|||++|++.++|.++   .++|.++|||++|+|+++|++|+.
T Consensus         1 MKA~v~~~~~~-~~~~l~-e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~---~~~p~i~GhE~aG~V~~vG~~V~~   75 (348)
T 4eez_A            1 MKAAVVRHNPD-GYADLV-EKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFG---NKAGTVLGHEGIGIVKEIGADVSS   75 (348)
T ss_dssp             CEEEEECSSCC-SSEEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTC---CCTTCBCCSEEEEEEEEECTTCCS
T ss_pred             CeEEEEEcCCC-CcEEEE-EeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCC---CCCCcccceeEEEEEEEECceeee
Confidence            89999965433 237777 8999999999999999999999999999999765   467899999999999999999999


Q ss_pred             CCCCCEEEEecCccc-------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          164 FKEGDEVYGDINEKA-------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~-------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      |++||+|++.....+                   ..+....|+|+||+++++..++++|+++++++++++++++.|||++
T Consensus        76 ~~~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~  155 (348)
T 4eez_A           76 LQVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKA  155 (348)
T ss_dssp             CCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeecCCCCCHHHHhhcccceeeEEee
Confidence            999999987543211                   2233457999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHc-CCccC
Q 024775          225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYY-LEFFF  261 (262)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-Ga~V~  261 (262)
                      ++.+++++|++|||+| +|++|++++|+|+.+ |++|+
T Consensus       156 l~~~~~~~g~~VlV~G-aG~~g~~a~~~a~~~~g~~Vi  192 (348)
T 4eez_A          156 IKVSGVKPGDWQVIFG-AGGLGNLAIQYAKNVFGAKVI  192 (348)
T ss_dssp             HHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTSCCEEE
T ss_pred             ecccCCCCCCEEEEEc-CCCccHHHHHHHHHhCCCEEE
Confidence            9999999999999998 699999999999876 56663

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=1.2e-33  Score=256.48  Aligned_cols=175  Identities=25%  Similarity=0.278  Sum_probs=148.9

Q ss_pred             ccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcC-CCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQG-KFKATDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        81 p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g-~~~~~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      +++||++++++++.  .++++ +.+.|++++|||+|||.+++||++|++.++| .++....++|.++|||++|+|+++|+
T Consensus         2 m~~mka~~~~~~g~--~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~   78 (348)
T 2d8a_A            2 SEKMVAIMKTKPGY--GAELV-EVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGP   78 (348)
T ss_dssp             -CEEEEEEECSSSS--SCEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECT
T ss_pred             CCcceEEEEECCCC--CEEEE-ECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECC
Confidence            34699999999884  36777 8999999999999999999999999999988 43211135689999999999999999


Q ss_pred             CCCCCCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHH
Q 024775          160 QVKEFKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETA  221 (262)
Q Consensus       160 ~v~~~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA  221 (262)
                      +|++|++||+|++.....|                  ..+....|+|+||++++++.++++|+++++++++.+. .+.||
T Consensus        79 ~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~ta  157 (348)
T 2d8a_A           79 GVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQE-PLGNA  157 (348)
T ss_dssp             TCCSCCTTCEEEECCEECCSCCC------------CEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHH-HHHHH
T ss_pred             CCCcCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEECCCCCCHHHHHhhh-HHHHH
Confidence            9999999999998642211                  0122346999999999999999999999999998774 77899


Q ss_pred             HHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          222 YEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       222 ~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      |++++++++ +|++|||+|+ |++|++++|+||.+|+ +|+
T Consensus       158 ~~~l~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi  196 (348)
T 2d8a_A          158 VDTVLAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVI  196 (348)
T ss_dssp             HHHHTTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEE
T ss_pred             HHHHHhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEE
Confidence            999987889 9999999997 9999999999999999 764

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=5.5e-33  Score=253.10  Aligned_cols=177  Identities=24%  Similarity=0.339  Sum_probs=151.3

Q ss_pred             CcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      .++++|+++++.+..  +.++++ +.+.|++++|||+|||.+++||++|++.++|.++.  ..+|.++|||++|+|+++|
T Consensus         5 ~~~m~~~a~~~~~~~--~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~P~v~GhE~~G~V~~vG   79 (357)
T 2cf5_A            5 EAERKTTGWAARDPS--GILSPY-TYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM--SNYPMVPGHEVVGEVVEVG   79 (357)
T ss_dssp             -CCCEEEEEEECSTT--CCEEEE-EEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTC--CCSSBCCCCEEEEEEEEEC
T ss_pred             cCcceeEEEEEccCC--CCcEEE-EecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCC--CCCCeecCcceeEEEEEEC
Confidence            456778888876543  347777 88999999999999999999999999999886543  4578999999999999999


Q ss_pred             CCCCCCCCCCEEEEecC----cc---c-------c------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHh
Q 024775          159 TQVKEFKEGDEVYGDIN----EK---A-------L------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAA  212 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~----~~---~-------~------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa  212 (262)
                      ++|++|++||+|+....    ..   |       |            .+....|+|+||++++++.++++|+++++++++
T Consensus        80 ~~v~~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa  159 (357)
T 2cf5_A           80 SDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAA  159 (357)
T ss_dssp             SSCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHHHHT
T ss_pred             CCCCCCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCCCCHHHhh
Confidence            99999999999986321    00   0       0            011246999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          213 GLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       213 ~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+++++.|||+++++.+++ +|++|||+| +|++|++++|+||.+|++|+
T Consensus       160 ~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~Vi  208 (357)
T 2cf5_A          160 PLLCAGVTVYSPLSHFGLKQPGLRGGILG-LGGVGHMGVKIAKAMGHHVT  208 (357)
T ss_dssp             GGGTHHHHHHHHHHHTSTTSTTCEEEEEC-CSHHHHHHHHHHHHHTCEEE
T ss_pred             hhhhhHHHHHHHHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence            9999999999999988998 999999999 69999999999999999874

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=4.1e-33  Score=255.37  Aligned_cols=175  Identities=25%  Similarity=0.288  Sum_probs=151.5

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      .|.+||++++.+++..  ++++ +.+.|++++|||+|||.+++||++|++.+.|. +.  .++|.++|||++|+|+++|+
T Consensus         5 ~p~~mka~~~~~~g~~--l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~--~~~P~v~GhE~~G~V~~vG~   78 (376)
T 1e3i_A            5 KVIKCKAAIAWKTGSP--LCIE-EIEVSPPKACEVRIQVIATCVCPTDINATDPK-KK--ALFPVVLGHECAGIVESVGP   78 (376)
T ss_dssp             SCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SC--CCSSBCCCCEEEEEEEEECT
T ss_pred             CChheeEEEEecCCCC--eEEE-EeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CC--CCCCcccCccccEEEEEECC
Confidence            5778999999998754  6666 88999999999999999999999999999886 32  46789999999999999999


Q ss_pred             CCCCCCCCCEEEEecCccc-------------cC------------CC------------------CCCCceeeEEEecC
Q 024775          160 QVKEFKEGDEVYGDINEKA-------------LE------------GP------------------KQFGSLAEYTAVEE  196 (262)
Q Consensus       160 ~v~~~~~Gd~V~~~~~~~~-------------~~------------~~------------------~~~G~~ae~~~v~~  196 (262)
                      +|+.|++||+|++.....|             +.            +.                  ...|+|+||+++++
T Consensus        79 ~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~  158 (376)
T 1e3i_A           79 GVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSE  158 (376)
T ss_dssp             TCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEG
T ss_pred             CCccCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccceeEEEecc
Confidence            9999999999998642111             00            10                  02489999999999


Q ss_pred             CCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          197 RLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       197 ~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      +.++++|+++++++++.+++++.|||+++. ++++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus       159 ~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi  224 (376)
T 1e3i_A          159 ANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFG-LGCVGLSAIIGCKIAGASRII  224 (376)
T ss_dssp             GGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEE
T ss_pred             ccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            999999999999999999999999999985 58999999999999 69999999999999999 563

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.6e-33  Score=256.24  Aligned_cols=174  Identities=21%  Similarity=0.249  Sum_probs=150.6

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      .|.+||++++++++.+  ++++ +.+.|++++|||+|||.+++||++|++.+.|..+   ..+|.++|||++|+|+++|+
T Consensus         3 ~~~~mka~~~~~~g~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~P~v~GhE~~G~V~~vG~   76 (371)
T 1f8f_A            3 ELKDIIAAVTPCKGAD--FELQ-ALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP---VPLPAVLGHEGSGIIEAIGP   76 (371)
T ss_dssp             -CEEEEEEEBCSTTCC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSBCCCCEEEEEEEEECT
T ss_pred             ccccceEEEEcCCCCC--eEEE-EecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC---CCCCcccCcccceEEEEeCC
Confidence            3557999999998754  6666 8899999999999999999999999999998654   45789999999999999999


Q ss_pred             CCCCCCCCCEEEEecCcccc-----------------------------------CC------CCCCCceeeEEEecCCC
Q 024775          160 QVKEFKEGDEVYGDINEKAL-----------------------------------EG------PKQFGSLAEYTAVEERL  198 (262)
Q Consensus       160 ~v~~~~~Gd~V~~~~~~~~~-----------------------------------~~------~~~~G~~ae~~~v~~~~  198 (262)
                      +|++|++||+|++.. ..|.                                   .+      ....|+|+||++++++.
T Consensus        77 ~v~~~~~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~  155 (371)
T 1f8f_A           77 NVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENN  155 (371)
T ss_dssp             TCCSCCTTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGG
T ss_pred             CCCCCCCCCEEEecC-CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhh
Confidence            999999999999853 1110                                   00      01258999999999999


Q ss_pred             eEECCCCCCHhhHhcccchHHHHHHHH-HHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          199 LAPKPKNLDFVQAAGLPLAIETAYEGL-ERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       199 ~~~lP~~~~~~~aa~l~~~~~tA~~al-~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      ++++|+++++++++.+++++.|||+++ +++++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus       156 ~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~a~qlak~~Ga~~Vi  219 (371)
T 1f8f_A          156 TVKVTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWG-AGAVGLSALLAAKVCGASIII  219 (371)
T ss_dssp             EEEECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEES-CSHHHHHHHHHHHHHTCSEEE
T ss_pred             eEECCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            999999999999999999999999999 468999999999999 69999999999999999 453

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=2.9e-33  Score=254.27  Aligned_cols=170  Identities=23%  Similarity=0.293  Sum_probs=149.8

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHH-hHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGK-RRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~-~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      |||++++++++   ++++ +.+.|++++|||+|||.+++||++|++ ++.|..+   .++|.++|||++|+|+++|++|+
T Consensus         1 MkA~~~~~~~~---~~~~-e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~---~~~p~v~G~E~~G~V~~vG~~v~   73 (352)
T 3fpc_A            1 MKGFAMLSIGK---VGWI-EKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIG---ERHNMILGHEAVGEVVEVGSEVK   73 (352)
T ss_dssp             CEEEEEEETTE---EEEE-ECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTC---CCSSEECCCEEEEEEEEECTTCC
T ss_pred             CeEEEEccCCC---ceEE-eCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCC---CCCCcccCCcceEEEEEECCCCC
Confidence            89999999987   6666 899999999999999999999999999 5688654   45789999999999999999999


Q ss_pred             CCCCCCEEEEecCccc---------------------cCCCCCCCceeeEEEecCC--CeEECCCCCCHhhHhcccchHH
Q 024775          163 EFKEGDEVYGDINEKA---------------------LEGPKQFGSLAEYTAVEER--LLAPKPKNLDFVQAAGLPLAIE  219 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~---------------------~~~~~~~G~~ae~~~v~~~--~~~~lP~~~~~~~aa~l~~~~~  219 (262)
                      +|++||+|++.....|                     ..+....|+|+||+++++.  .++++|+++++++++.++.++.
T Consensus        74 ~~~vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~~  153 (352)
T 3fpc_A           74 DFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMT  153 (352)
T ss_dssp             SCCTTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHHH
T ss_pred             cCCCCCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEECCCCCCHHHHhhccchhH
Confidence            9999999997532111                     0122357999999999976  8999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       220 tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      |||++++++++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus       154 ta~~al~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi  195 (352)
T 3fpc_A          154 TGFHGAELANIKLGDTVCVIG-IGPVGLMSVAGANHLGAGRIF  195 (352)
T ss_dssp             HHHHHHHHTTCCTTCCEEEEC-CSHHHHHHHHHHHTTTCSSEE
T ss_pred             HHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence            999999889999999999998 69999999999999999 564

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=1.4e-33  Score=254.39  Aligned_cols=169  Identities=25%  Similarity=0.322  Sum_probs=149.5

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCC-CCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF-KATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~-~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      |||+++.+++.++.++++ +.+.|++++|||+|||.+++||++|++.++|.+ +.....+|.++|||++|+|+++|++|+
T Consensus         2 Mka~~~~~~g~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~   80 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWE-EVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVT   80 (333)
T ss_dssp             CEEEEESSCSSGGGEEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCC
T ss_pred             cEEEEEcccCCcceeEEE-eccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCC
Confidence            899999999887778888 899999999999999999999999999998865 211134689999999999999999999


Q ss_pred             CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhh--HhcccchHHHHHHHHH-HcCCCCCCEEEEE
Q 024775          163 EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQ--AAGLPLAIETAYEGLE-RTGFSAGKSILVL  239 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~--aa~l~~~~~tA~~al~-~~~~~~g~~VlI~  239 (262)
                      +|++||+|+....        ..|+|+||++++++.++++|+++++++  +++++.++.|||+++. .+++++|++|||+
T Consensus        81 ~~~~GdrV~~~~~--------~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~  152 (333)
T 1wly_A           81 DFTVGERVCTCLP--------PLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIH  152 (333)
T ss_dssp             SCCTTCEEEECSS--------SCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEET
T ss_pred             CCCCCCEEEEecC--------CCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEE
Confidence            9999999976431        259999999999999999999999999  8999999999999997 5899999999999


Q ss_pred             cCchHHHHHHHHHHHHcCCccC
Q 024775          240 NGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       240 Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++|++++|+|+..|++|+
T Consensus       153 Ga~ggiG~~~~~~a~~~G~~Vi  174 (333)
T 1wly_A          153 AAAGGMGHIMVPWARHLGATVI  174 (333)
T ss_dssp             TTTSTTHHHHHHHHHHTTCEEE
T ss_pred             CCccHHHHHHHHHHHHCCCEEE
Confidence            9999999999999999999875

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=4.4e-33  Score=251.98  Aligned_cols=173  Identities=27%  Similarity=0.363  Sum_probs=151.6

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||+++++++..  ++++ +.+.|++++|||+|||.+++||++|++.++|..+. ...+|.++|||++|+|+++|++|++
T Consensus         1 Mka~~~~~~g~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~GhE~~G~V~~vG~~v~~   76 (339)
T 1rjw_A            1 MKAAVVEQFKEP--LKIK-EVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPV-KPKLPLIPGHEGVGIVEEVGPGVTH   76 (339)
T ss_dssp             CEEEEBSSTTSC--CEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS-CCCSSBCCCSCEEEEEEEECTTCCS
T ss_pred             CeEEEEcCCCCC--cEEE-EeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCc-CCCCCeeccccceEEEEEECCCCCc
Confidence            899999998843  6676 89999999999999999999999999999987542 2457899999999999999999999


Q ss_pred             CCCCCEEEEecCc----cc---------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          164 FKEGDEVYGDINE----KA---------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       164 ~~~Gd~V~~~~~~----~~---------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      |++||+|++....    .|               ..+....|+|+||++++++.++++|+++++++++.+++++.|||++
T Consensus        77 ~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~  156 (339)
T 1rjw_A           77 LKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKA  156 (339)
T ss_dssp             CCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHH
T ss_pred             CCCCCEEEEecCCCCCCCCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHHHH
Confidence            9999999874210    00               1123357999999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +++.++++|++|||+|+ |++|++++|+|+.+|++|+
T Consensus       157 l~~~~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi  192 (339)
T 1rjw_A          157 LKVTGAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVV  192 (339)
T ss_dssp             HHHHTCCTTCEEEEECC-STTHHHHHHHHHHTTCEEE
T ss_pred             HHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEE
Confidence            98889999999999996 8899999999999999875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=6.2e-33  Score=254.03  Aligned_cols=175  Identities=24%  Similarity=0.302  Sum_probs=151.9

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      .|.+|||+++.+++.+  ++++ +.+.|++++|||+|||.+++||++|++.+.|..+.   .+|.++|||++|+|+++|+
T Consensus         5 ~~~~mkA~~~~~~g~~--l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~P~v~GhE~~G~V~~vG~   78 (374)
T 2jhf_A            5 KVIKCKAAVLWEEKKP--FSIE-EVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT---PLPVIAGHEAAGIVESIGE   78 (374)
T ss_dssp             SCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC---CSSBCCCCSEEEEEEEECT
T ss_pred             CceeEEEEEEecCCCc--eEEE-EccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC---CCCcccCcCceEEEEEECC
Confidence            4678999999998754  6666 88999999999999999999999999999987542   3789999999999999999


Q ss_pred             CCCCCCCCCEEEEecCccc-------------cC--------CC------------------CCCCceeeEEEecCCCeE
Q 024775          160 QVKEFKEGDEVYGDINEKA-------------LE--------GP------------------KQFGSLAEYTAVEERLLA  200 (262)
Q Consensus       160 ~v~~~~~Gd~V~~~~~~~~-------------~~--------~~------------------~~~G~~ae~~~v~~~~~~  200 (262)
                      +|++|++||+|++.....|             +.        +.                  ...|+|+||++++++.++
T Consensus        79 ~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~  158 (374)
T 2jhf_A           79 GVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVA  158 (374)
T ss_dssp             TCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEE
T ss_pred             CCCCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEEEchHHeE
Confidence            9999999999998642111             00        10                  024899999999999999


Q ss_pred             ECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          201 PKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       201 ~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      ++|+++++++++.+++++.|||+++. ++++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus       159 ~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi  220 (374)
T 2jhf_A          159 KIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFG-LGGVGLSVIMGCKAAGAARII  220 (374)
T ss_dssp             ECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEE
T ss_pred             ECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence            99999999999999999999999985 58999999999999 69999999999999999 563

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=2.5e-33  Score=251.52  Aligned_cols=171  Identities=26%  Similarity=0.257  Sum_probs=151.4

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||++++++++++.++++ +.+.|++++|||+|||.+++||++|++.++|..+. ..++|.++|||++|+|+++|  +++
T Consensus         1 MkA~~~~~~g~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~v~G~E~~G~V~~~G--v~~   76 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQ-HLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKI-IRHFPMIPGIDFAGTVHASE--DPR   76 (324)
T ss_dssp             CEEEEEEESSSSEEEEEE-ECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTC-CCSSSBCCCSEEEEEEEEES--STT
T ss_pred             CceEEEecCCCCceeeEe-ecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCC-CCCCCccccceeEEEEEEeC--CCC
Confidence            899999999998889998 99999999999999999999999999999997653 25678999999999999998  678


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH---HcCCCCCC-EEEEE
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE---RTGFSAGK-SILVL  239 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~---~~~~~~g~-~VlI~  239 (262)
                      |++||+|++..   +..+....|+|+||++++++.++++|+++++++++.++..+.|||+++.   +.++++++ .|||+
T Consensus        77 ~~vGdrV~~~~---~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~  153 (324)
T 3nx4_A           77 FHAGQEVLLTG---WGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVT  153 (324)
T ss_dssp             CCTTCEEEEEC---TTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEES
T ss_pred             CCCCCEEEEcc---cccCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEE
Confidence            99999999863   1223335799999999999999999999999999999999999998884   46677743 49999


Q ss_pred             cCchHHHHHHHHHHHHcCCccC
Q 024775          240 NGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       240 Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++|++++|+||.+|++|+
T Consensus       154 Ga~G~vG~~aiqla~~~Ga~Vi  175 (324)
T 3nx4_A          154 GASGGVGSTAVALLHKLGYQVA  175 (324)
T ss_dssp             STTSHHHHHHHHHHHHTTCCEE
T ss_pred             CCCcHHHHHHHHHHHHcCCEEE
Confidence            9889999999999999999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.6e-33  Score=254.89  Aligned_cols=175  Identities=21%  Similarity=0.238  Sum_probs=151.9

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHH-hHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGK-RRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~-~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      .|.+|||+++.+++++  ++++ +.+.|++++|||+|||.+++||++|++ .+.|..+   ..+|.++|||++|+|+++|
T Consensus         5 ~~~~mka~~~~~~~~~--l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~---~~~P~v~GhE~~G~V~~vG   78 (374)
T 1cdo_A            5 KVIKCKAAVAWEANKP--LVIE-EIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK---DGFPVVLGHEGAGIVESVG   78 (374)
T ss_dssp             SCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT---TSCSEECCCCEEEEEEEEC
T ss_pred             CcceeEEEEEecCCCC--eEEE-EeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC---CCCCcccCccceEEEEEEC
Confidence            5678999999998754  6666 889999999999999999999999999 8888654   4578999999999999999


Q ss_pred             CCCCCCCCCCEEEEecCccc-------------cC--------CC------------------CCCCceeeEEEecCCCe
Q 024775          159 TQVKEFKEGDEVYGDINEKA-------------LE--------GP------------------KQFGSLAEYTAVEERLL  199 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~-------------~~--------~~------------------~~~G~~ae~~~v~~~~~  199 (262)
                      ++|++|++||+|++.....|             +.        +.                  ...|+|+||++++++.+
T Consensus        79 ~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  158 (374)
T 1cdo_A           79 PGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAV  158 (374)
T ss_dssp             TTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGE
T ss_pred             CCCccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEEchhhe
Confidence            99999999999998642211             00        11                  02489999999999999


Q ss_pred             EECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          200 APKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       200 ~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      +++|+++++++++.+++++.|||+++. ++++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus       159 ~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~G-aG~vG~~a~qla~~~Ga~~Vi  221 (374)
T 1cdo_A          159 AKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFG-LGAVGLAAVMGCHSAGAKRII  221 (374)
T ss_dssp             EECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEE
T ss_pred             EECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            999999999999999999999999985 68999999999999 69999999999999999 563

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=9.2e-33  Score=252.96  Aligned_cols=175  Identities=22%  Similarity=0.222  Sum_probs=149.6

Q ss_pred             ccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (262)
Q Consensus        81 p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~  160 (262)
                      ..+||+|++.++++  .++++ +.+.|++++|||+|||.+++||++|++.+.|..+.  ..+|.++|||++|+|+++|++
T Consensus        20 ~~~~~a~~~~~~~~--~l~~~-~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~P~v~GhE~~G~V~~vG~~   94 (369)
T 1uuf_A           20 GLKIKAVGAYSAKQ--PLEPM-DITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG--TVYPCVPGHEIVGRVVAVGDQ   94 (369)
T ss_dssp             ---CEEEEBSSTTS--CCEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC--CCSSBCCCCCEEEEEEEECTT
T ss_pred             CceEEEEEEcCCCC--CcEEE-EecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCC--CCCCeecccCceEEEEEECCC
Confidence            34589999876643  37777 89999999999999999999999999999986543  357899999999999999999


Q ss_pred             CCCCCCCCEEEEecCcc--------------ccC-------------CCCCCCceeeEEEecCCCeEECCCC-CCHhhHh
Q 024775          161 VKEFKEGDEVYGDINEK--------------ALE-------------GPKQFGSLAEYTAVEERLLAPKPKN-LDFVQAA  212 (262)
Q Consensus       161 v~~~~~Gd~V~~~~~~~--------------~~~-------------~~~~~G~~ae~~~v~~~~~~~lP~~-~~~~~aa  212 (262)
                      |++|++||+|++.....              .+.             +....|+|+||++++++.++++|++ +++++++
T Consensus        95 V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa  174 (369)
T 1uuf_A           95 VEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVA  174 (369)
T ss_dssp             CCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSCGGGHHHHG
T ss_pred             CCCCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCCCCCCHHHhh
Confidence            99999999998742110              000             2124699999999999999999999 9999999


Q ss_pred             cccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          213 GLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       213 ~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+++++.|||+++++.++++|++|||+| +|++|++++|+||.+|++|+
T Consensus       175 ~l~~~~~tA~~al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~Vi  222 (369)
T 1uuf_A          175 PLLCAGITTYSPLRHWQAGPGKKVGVVG-IGGLGHMGIKLAHAMGAHVV  222 (369)
T ss_dssp             GGGTHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             hhhhhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            9999999999999988999999999999 59999999999999999874

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=1.4e-32  Score=248.51  Aligned_cols=168  Identities=20%  Similarity=0.290  Sum_probs=146.8

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      |||++++++|.   ++++ |.|+|++ ++|||||||+++|||++|++.+.|..+   ..+|+++|||++|+|+++|++|+
T Consensus         1 MkAvv~~~~g~---l~v~-e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~---~~~P~i~G~E~~G~V~~vG~~V~   73 (346)
T 4a2c_A            1 MKSVVNDTDGI---VRVA-ESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGA---HYYPITLGHEFSGYIDAVGSGVD   73 (346)
T ss_dssp             CEEEEECSSSC---EEEE-ECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCS---SSSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCEEEEecCCC---EEEE-EEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCC---CCCCccccEEEEEEEEEECCCcc
Confidence            89999999987   7777 9999985 699999999999999999999988654   46789999999999999999999


Q ss_pred             CCCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          163 EFKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      .+++||+|++.....|                  ..+....|+|+||++++++.++++|+++++++++++. .+.+++++
T Consensus        74 ~~~~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~-~~~~~~~~  152 (346)
T 4a2c_A           74 DLHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIE-PITVGLHA  152 (346)
T ss_dssp             SCCTTCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHH-HHHHHHHH
T ss_pred             cccCCCeEEeeeccCCCCcccccCCccccCCCcccccCCCCcccccccccchheEEECCCCCCHHHHHhch-HHHHHHHH
Confidence            9999999987643211                  2234567999999999999999999999999998764 45567777


Q ss_pred             HHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775          225 LERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF  260 (262)
Q Consensus       225 l~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V  260 (262)
                      +.+.++++|++|+|+| +|++|++++|+||.+|+++
T Consensus       153 ~~~~~~~~g~~VlV~G-aG~vG~~aiq~ak~~G~~~  187 (346)
T 4a2c_A          153 FHLAQGCENKNVIIIG-AGTIGLLAIQCAVALGAKS  187 (346)
T ss_dssp             HHHTTCCTTSEEEEEC-CSHHHHHHHHHHHHTTCSE
T ss_pred             HHHhccCCCCEEEEEC-CCCcchHHHHHHHHcCCcE
Confidence            7889999999999998 6999999999999999875

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=4e-33  Score=261.02  Aligned_cols=181  Identities=31%  Similarity=0.424  Sum_probs=151.5

Q ss_pred             CcccceeEEEEcccC-----------CcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHc---------------
Q 024775           79 TVPSEMKAWLYGEYG-----------GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQ---------------  132 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g-----------~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~---------------  132 (262)
                      .+|++|||+++++++           ..+.++++ +.+.|++++|||+|||.+++||++|++...               
T Consensus        20 ~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~-e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~   98 (447)
T 4a0s_A           20 PVPDTYLALHLRAEDADMFKGVADKDVRKSLRLG-EVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNAR   98 (447)
T ss_dssp             CCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHT
T ss_pred             CCChhheeeeeeccccccccccccCCCCCCceEE-eccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhcc
Confidence            589999999999987           12347887 999999999999999999999999985432               


Q ss_pred             -CCCCCCCCCCC-CCCCccEEEEEEEeCCCCCCCCCCCEEEEecCccc-----------------cCCCC-CCCceeeEE
Q 024775          133 -GKFKATDSPLP-TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKA-----------------LEGPK-QFGSLAEYT  192 (262)
Q Consensus       133 -g~~~~~~~~~p-~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~-----------------~~~~~-~~G~~ae~~  192 (262)
                       +.++. ..++| .++|||++|+|+++|++|++|++||+|++.+...|                 ..+.. ..|+|+||+
T Consensus        99 ~g~~~~-~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~  177 (447)
T 4a0s_A           99 QGGWAT-RHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYG  177 (447)
T ss_dssp             TCGGGG-GGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEE
T ss_pred             cCcccc-ccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCcccccccccccccccccccccCCCCceeeee
Confidence             21111 12456 69999999999999999999999999998642111                 11111 259999999


Q ss_pred             EecCCCeEECCCCCCHhhHhcccchHHHHHHHHH---HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          193 AVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE---RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       193 ~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~---~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +++++.++++|+++++++++.+++++.|||+++.   .+++++|++|||+|++|++|++++|+|+.+|++|+
T Consensus       178 ~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi  249 (447)
T 4a0s_A          178 VVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPV  249 (447)
T ss_dssp             EEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             ecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEE
Confidence            9999999999999999999999999999999994   37899999999999889999999999999999864

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=8.8e-33  Score=252.31  Aligned_cols=169  Identities=24%  Similarity=0.335  Sum_probs=151.4

Q ss_pred             CcccceeEEEEcccCCc--ceEEE-EeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEE
Q 024775           79 TVPSEMKAWLYGEYGGV--DVLKF-DEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVV  155 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g~~--~~l~~-~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv  155 (262)
                      .+|.+|||+++++++..  +.+++ + +.+.|++++|||+|||.+++||++|++.++|.++. ..++|.++|||++|+|+
T Consensus        19 ~~~~~MkA~~~~~~g~~~~~~l~~~~-~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~~P~i~G~E~~G~V~   96 (362)
T 2c0c_A           19 YFQSMMQKLVVTRLSPNFREAVTLSR-DCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDP-SVKPPFDIGFEGIGEVV   96 (362)
T ss_dssp             HHCCEEEEEEECSCCSSHHHHEEEEE-EEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCT-TCCSCEECCSEEEEEEE
T ss_pred             cchhhceEEEEeecCCCccceeEEEe-ecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCC-CCCCCCCCCceeEEEEE
Confidence            46888999999998863  46888 7 89999999999999999999999999999987542 24578999999999999


Q ss_pred             EeCCCCC-CCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCC
Q 024775          156 KVGTQVK-EFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAG  233 (262)
Q Consensus       156 ~vG~~v~-~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g  233 (262)
                      ++|++|+ +|++||+|++..          .|+|+||++++++.++++|+. . .++++++.++.|||+++. ..++++|
T Consensus        97 ~vG~~V~~~~~vGdrV~~~~----------~G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g  164 (362)
T 2c0c_A           97 ALGLSASARYTVGQAVAYMA----------PGSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEG  164 (362)
T ss_dssp             EECTTGGGTCCTTCEEEEEC----------SCCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTT
T ss_pred             EECCCccCCCCCCCEEEEcc----------CCcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCC
Confidence            9999999 999999999864          599999999999999999986 3 467778889999999996 4789999


Q ss_pred             CEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          234 KSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++|||+||+|++|++++|+|+.+|++|+
T Consensus       165 ~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi  192 (362)
T 2c0c_A          165 KKVLVTAAAGGTGQFAMQLSKKAKCHVI  192 (362)
T ss_dssp             CEEEETTTTBTTHHHHHHHHHHTTCEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHhCCCEEE
Confidence            9999999999999999999999999875

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=8.6e-33  Score=259.64  Aligned_cols=183  Identities=29%  Similarity=0.393  Sum_probs=152.5

Q ss_pred             CCcccceeEEEEcccC-------------CcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCC--------
Q 024775           78 GTVPSEMKAWLYGEYG-------------GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFK--------  136 (262)
Q Consensus        78 ~~~p~~~ka~v~~~~g-------------~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~--------  136 (262)
                      +.+|++|||+++.+++             ....++++ +.+.|++++|||||||.+++||++|++...+...        
T Consensus        25 ~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~-e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~  103 (456)
T 3krt_A           25 LPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLD-DVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLER  103 (456)
T ss_dssp             SCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHH
T ss_pred             CCCCcceEEEEEeccccccccccccccCCCCCCcEEE-EccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhh
Confidence            3689999999999872             22457887 9999999999999999999999999876543210        


Q ss_pred             -----C--CCCCCC-CCCCccEEEEEEEeCCCCCCCCCCCEEEEecCccc-----------------cCCC-CCCCceee
Q 024775          137 -----A--TDSPLP-TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKA-----------------LEGP-KQFGSLAE  190 (262)
Q Consensus       137 -----~--~~~~~p-~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~-----------------~~~~-~~~G~~ae  190 (262)
                           .  ...++| .++|||++|+|+++|++|++|++||+|++.+...+                 ..+. ...|+|+|
T Consensus       104 ~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~ae  183 (456)
T 3krt_A          104 YGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAE  183 (456)
T ss_dssp             HHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBS
T ss_pred             ccccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCCcccccccccccccccCccccccccCCCCCcccc
Confidence                 0  012456 58999999999999999999999999998653110                 1111 12599999


Q ss_pred             EEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHH---cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          191 YTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLER---TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       191 ~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~---~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++++++.++++|+++++++++.+++++.|||+++..   +++++|++|||+|++|++|++++|+||.+|++|+
T Consensus       184 y~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi  257 (456)
T 3krt_A          184 IALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPI  257 (456)
T ss_dssp             EEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             eEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEE
Confidence            9999999999999999999999999999999999953   7899999999999889999999999999999864

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=1e-32  Score=251.07  Aligned_cols=173  Identities=20%  Similarity=0.292  Sum_probs=146.5

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCC-CCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGK-FKATDSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~-~~~~~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      +|||+++++++.   ++++ +.+.|++++|||+|||.+++||++|++.+++. ......++|.++|||++|+|+++|++|
T Consensus         7 ~mka~~~~~~~~---l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V   82 (356)
T 1pl8_A            7 NNLSLVVHGPGD---LRLE-NYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSV   82 (356)
T ss_dssp             CCEEEEEEETTE---EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTC
T ss_pred             CceEEEEecCCc---EEEE-EccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCC
Confidence            499999998653   7777 88999999999999999999999999988743 221113568999999999999999999


Q ss_pred             CCCCCCCEEEEecCccc------------------cCC-CCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHH
Q 024775          162 KEFKEGDEVYGDINEKA------------------LEG-PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY  222 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~------------------~~~-~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~  222 (262)
                      ++|++||+|++.....|                  ..+ ....|+|+||++++++.++++|+++++++++.+ .++.|||
T Consensus        83 ~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~-~~~~ta~  161 (356)
T 1pl8_A           83 KHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALI-EPLSVGI  161 (356)
T ss_dssp             CSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHH-HHHHHHH
T ss_pred             CCCCCCCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhh-chHHHHH
Confidence            99999999998632111                  011 123699999999999999999999999998865 5788999


Q ss_pred             HHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      ++++++++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus       162 ~al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi  200 (356)
T 1pl8_A          162 HACRRGGVTLGHKVLVCG-AGPIGMVTLLVAKAMGAAQVV  200 (356)
T ss_dssp             HHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            999889999999999999 69999999999999999 664

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=2e-32  Score=247.99  Aligned_cols=173  Identities=26%  Similarity=0.332  Sum_probs=146.6

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      .+|||+++++++..  ++++ +.+.|++++|||+|||.+++||++|++.++|.++.....+|.++|||++|+|+++|++ 
T Consensus         2 ~~mka~~~~~~g~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-   77 (344)
T 2h6e_A            2 VKSKAALLKKFSEP--LSIE-DVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-   77 (344)
T ss_dssp             EEEEBCEECSCCC--------EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-
T ss_pred             ceeEEEEEecCCCC--CeEE-EeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-
Confidence            36999999998743  6776 8899999999999999999999999999998754212457899999999999999999 


Q ss_pred             CCCCCCCEEEEecCccc------------------cCCCCCCCceeeEEEec-CCCeEECCCCCCHhhHhcccchHHHHH
Q 024775          162 KEFKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVE-ERLLAPKPKNLDFVQAAGLPLAIETAY  222 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~-~~~~~~lP~~~~~~~aa~l~~~~~tA~  222 (262)
                      ++|++||+|++.....|                  ..+....|+|+||++++ ++.++++ +++++++++.+++++.|||
T Consensus        78 ~~~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta~  156 (344)
T 2h6e_A           78 AKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTSM  156 (344)
T ss_dssp             CCCCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHHH
T ss_pred             CCCCCCCEEEECCCCCCCCChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHHH
Confidence            99999999987642211                  11123479999999999 9999999 9999999999999999999


Q ss_pred             HHHHHc-----CCCCCCEEEEEcCchHHHHHHHHHHHHc--CCccC
Q 024775          223 EGLERT-----GFSAGKSILVLNGSGGVGSLVIQVCYYY--LEFFF  261 (262)
Q Consensus       223 ~al~~~-----~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--Ga~V~  261 (262)
                      +++++.     ++ +|++|||+|+ |++|++++|+||.+  |++|+
T Consensus       157 ~al~~~~~~~~~~-~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi  200 (344)
T 2h6e_A          157 GAIRQALPFISKF-AEPVVIVNGI-GGLAVYTIQILKALMKNITIV  200 (344)
T ss_dssp             HHHHHHHHHHTTC-SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEE
T ss_pred             HHHHhhhhcccCC-CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEE
Confidence            999877     89 9999999996 99999999999999  99874

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=1.3e-32  Score=249.18  Aligned_cols=172  Identities=26%  Similarity=0.266  Sum_probs=148.3

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC-CCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA-TDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~-~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      |||+++++++++  ++++ +.+.|++++|||+|||.+++||++|++.+.|..+. ....+|.++|||++|+|+++|++|+
T Consensus         1 Mka~~~~~~g~~--l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   77 (343)
T 2dq4_A            1 MRALAKLAPEEG--LTLV-DRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVR   77 (343)
T ss_dssp             CEEEEECSSSSS--CEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCC
T ss_pred             CeEEEEeCCCCc--EEEE-eccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCC
Confidence            899999999874  6777 89999999999999999999999999999986431 0135689999999999999999999


Q ss_pred             CCCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          163 EFKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      +|++||+|++.....|                  ..+....|+|+||++++++.++++|+++++++++.+ ..+.|||++
T Consensus        78 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~~  156 (343)
T 2dq4_A           78 RPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAIL-EPFGNAVHT  156 (343)
T ss_dssp             SSCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCHHHHTTH-HHHHHHHHH
T ss_pred             cCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEECCCCCCHHHHHhh-hHHHHHHHH
Confidence            9999999998532111                  112235799999999999999999999999999876 567799999


Q ss_pred             HH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          225 LE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       225 l~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      +. ++++ +|++|||+|+ |++|++++|+||.+|+ +|+
T Consensus       157 l~~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi  193 (343)
T 2dq4_A          157 VYAGSGV-SGKSVLITGA-GPIGLMAAMVVRASGAGPIL  193 (343)
T ss_dssp             HHSTTCC-TTSCEEEECC-SHHHHHHHHHHHHTTCCSEE
T ss_pred             HHHhCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEE
Confidence            98 7889 9999999997 9999999999999999 774

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=3.5e-32  Score=248.65  Aligned_cols=174  Identities=24%  Similarity=0.311  Sum_probs=148.5

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||++.+..++.++.++++ +++.|++++|||+|||.+++||++|++.+.|.++.  ..+|.++|||++|+|+++|++|++
T Consensus        15 mk~~~~~~~~~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~P~v~GhE~~G~V~~vG~~V~~   91 (366)
T 1yqd_A           15 VKAFGWAARDQSGHLSPF-NFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGF--SMYPLVPGHEIVGEVTEVGSKVKK   91 (366)
T ss_dssp             EEEEEEEECSTTCCEEEE-EEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSC--CCSSBCCCCCEEEEEEEECTTCCS
T ss_pred             eeEEEEEEcCCCCCcEEE-EccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCC--CCCCEecccceEEEEEEECCCCCc
Confidence            555555555555568887 88999999999999999999999999999886543  457899999999999999999999


Q ss_pred             CCCCCEEEEecC----cc---c-------c------------CCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccch
Q 024775          164 FKEGDEVYGDIN----EK---A-------L------------EGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLA  217 (262)
Q Consensus       164 ~~~Gd~V~~~~~----~~---~-------~------------~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~  217 (262)
                      |++||+|++...    ..   |       +            .+....|+|+||+++++..++++|+++++++++.++++
T Consensus        92 ~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~~~  171 (366)
T 1yqd_A           92 VNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLLCA  171 (366)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTTTTGGGGTH
T ss_pred             CCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHHHhhhhhhh
Confidence            999999986321    00   0       0            01124699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          218 IETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       218 ~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +.|||+++++.+++ +|++|||+| +|++|++++|+||.+|++|+
T Consensus       172 ~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~~~q~a~~~Ga~Vi  215 (366)
T 1yqd_A          172 GITVYSPLKYFGLDEPGKHIGIVG-LGGLGHVAVKFAKAFGSKVT  215 (366)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHhcCcCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            99999999988888 999999999 69999999999999999874

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=1.1e-32  Score=248.15  Aligned_cols=175  Identities=28%  Similarity=0.336  Sum_probs=150.9

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      ||++|||+++++++.++.++++ +.+.|++++|||+|||.+++||++|++.++|..+. ...+|.++|||++|+|+++  
T Consensus         1 m~~~mka~~~~~~g~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~i~G~E~~G~V~~~--   76 (330)
T 1tt7_A            1 MSTLFQALQAEKNADDVSVHVK-TISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNI-VREYPLILGIDAAGTVVSS--   76 (330)
T ss_dssp             -CCEEEEEEECCGGGSCCCEEE-EEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTT-CSSCSEECCSEEEEEEEEC--
T ss_pred             CCCcceEEEEecCCCCcceeEe-ecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCC-cCCCCccccceEEEEEEEc--
Confidence            5678999999998855557777 89999999999999999999999999999886542 2457899999999999996  


Q ss_pred             CCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH---HcCCCCCC-E
Q 024775          160 QVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE---RTGFSAGK-S  235 (262)
Q Consensus       160 ~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~---~~~~~~g~-~  235 (262)
                      ++++|++||+|++....   .+....|+|+||++++++.++++|+++++++++.+++++.|||.++.   +.++++|+ +
T Consensus        77 ~v~~~~vGdrV~~~~~~---~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~  153 (330)
T 1tt7_A           77 NDPRFAEGDEVIATSYE---LGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGS  153 (330)
T ss_dssp             SSTTCCTTCEEEEESTT---BTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred             CCCCCCCCCEEEEcccc---cCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCce
Confidence            46789999999986421   12234699999999999999999999999999999999999998874   46899997 9


Q ss_pred             EEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          236 ILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       236 VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |||+|++|++|++++|+||.+|++|+
T Consensus       154 VlV~Ga~G~vG~~~~q~a~~~Ga~vi  179 (330)
T 1tt7_A          154 VLVTGATGGVGGIAVSMLNKRGYDVV  179 (330)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHTCCEE
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            99999889999999999999999874

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=5.9e-32  Score=248.35  Aligned_cols=175  Identities=18%  Similarity=0.238  Sum_probs=150.0

Q ss_pred             CcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      .|--+||++++++++  +.++++ +.+.|+|++|||||||.+++||++|++.++|.++.  ..+|.++|||++|+|+++|
T Consensus        13 ~~~~~mka~~~~~~g--~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~~P~v~GhE~~G~V~~vG   87 (380)
T 1vj0_A           13 MMGLKAHAMVLEKFN--QPLVYK-EFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPR--VPLPIILGHEGAGRVVEVN   87 (380)
T ss_dssp             -CCEEEEEEEBCSTT--SCCEEE-EEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTT--CCSSBCCCCEEEEEEEEES
T ss_pred             HhhhheEEEEEecCC--CCeEEE-EccCCCCCCCEEEEEEeEEeecccchHHhcCCCCC--CCCCcccCcCcEEEEEEeC
Confidence            467789999999998  237777 88999999999999999999999999999986542  4578999999999999999


Q ss_pred             CCCC------CCCCCCEEEEecCccc------c-------------CCC--------CCCCceeeEEEe-cCCCeEECCC
Q 024775          159 TQVK------EFKEGDEVYGDINEKA------L-------------EGP--------KQFGSLAEYTAV-EERLLAPKPK  204 (262)
Q Consensus       159 ~~v~------~~~~Gd~V~~~~~~~~------~-------------~~~--------~~~G~~ae~~~v-~~~~~~~lP~  204 (262)
                       +|+      +|++||+|++.....|      .             .+.        ...|+|+||+++ +++.++++|+
T Consensus        88 -~V~~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~~~~~~~iP~  166 (380)
T 1vj0_A           88 -GEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSE  166 (380)
T ss_dssp             -SCCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECT
T ss_pred             -CccccccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEEcccceEEECCC
Confidence             999      9999999998632111      0             121        236999999999 9999999999


Q ss_pred             CCCHh-hHhcccchHHHHHHHHHHcC-CCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          205 NLDFV-QAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       205 ~~~~~-~aa~l~~~~~tA~~al~~~~-~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      +++++ +++++. ++.|||+++++++ +++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus       167 ~l~~~~~Aa~~~-~~~ta~~al~~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi  224 (380)
T 1vj0_A          167 KDDLDVLAMAMC-SGATAYHAFDEYPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVI  224 (380)
T ss_dssp             TSCHHHHHHHTT-HHHHHHHHHHTCSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEE
T ss_pred             CCChHHhHhhhc-HHHHHHHHHHhcCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEE
Confidence            99999 666555 9999999998889 99999999999 99999999999999994 774

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=6.2e-32  Score=245.05  Aligned_cols=174  Identities=30%  Similarity=0.416  Sum_probs=151.2

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC------CCCCCCCCCCccEEEEEEEe
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA------TDSPLPTVPGYDVAGVVVKV  157 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~------~~~~~p~~~G~e~vG~Vv~v  157 (262)
                      |||+++++++..  ++++ +.+.|++++|||+|||.+++||++|++.++|.++.      ....+|.++|||++|+|+++
T Consensus         1 Mka~~~~~~g~~--l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   77 (347)
T 1jvb_A            1 MRAVRLVEIGKP--LSLQ-EIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV   77 (347)
T ss_dssp             CEEEEECSTTSC--CEEE-ECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEE
T ss_pred             CeEEEEecCCCC--eEEE-EeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEE
Confidence            899999998743  6677 88999999999999999999999999999886541      12457899999999999999


Q ss_pred             CCCCCCCCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecC-CCeEECCCCCCHhhHhcccchH
Q 024775          158 GTQVKEFKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEE-RLLAPKPKNLDFVQAAGLPLAI  218 (262)
Q Consensus       158 G~~v~~~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~-~~~~~lP~~~~~~~aa~l~~~~  218 (262)
                      |++|++|++||+|++.....|                  ..+....|+|+||+++++ +.++++ +++++++++.+++++
T Consensus        78 G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~~  156 (347)
T 1jvb_A           78 GDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSG  156 (347)
T ss_dssp             CTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGTHH
T ss_pred             CCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEEe-CCCCHHHcccchhhH
Confidence            999999999999977532111                  112234699999999999 999999 999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHc-CCccC
Q 024775          219 ETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYY-LEFFF  261 (262)
Q Consensus       219 ~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~-Ga~V~  261 (262)
                      .|||++++++++++|++|||+|++|++|++++|+|+.. |++|+
T Consensus       157 ~ta~~~l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi  200 (347)
T 1jvb_A          157 ITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATII  200 (347)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEE
Confidence            99999998899999999999998779999999999999 99874

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=4.1e-32  Score=250.68  Aligned_cols=171  Identities=22%  Similarity=0.290  Sum_probs=148.1

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCC-CC-----CeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEE
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQV-KE-----DQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~-~~-----~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~  156 (262)
                      +|||+++++++.   ++++ +++.|++ ++     |||+|||.+++||++|++.++|..+   .++|.++|||++|+|++
T Consensus         2 ~MkA~~~~~~~~---l~~~-~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~---~~~p~v~GhE~~G~V~~   74 (398)
T 2dph_A            2 GNKSVVYHGTRD---LRVE-TVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI---VPKGHVLGHEITGEVVE   74 (398)
T ss_dssp             CEEEEEEEETTE---EEEE-EECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC---CCTTCBCCCCEEEEEEE
T ss_pred             ccEEEEEEcCCC---EEEE-EccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC---CCCCcccCCceEEEEEE
Confidence            599999998764   7777 8899987 68     9999999999999999999998643   46789999999999999


Q ss_pred             eCCCCCCCCCCCEEEEecCcccc--------------------------CC---CCCCCceeeEEEecCC--CeEECCCC
Q 024775          157 VGTQVKEFKEGDEVYGDINEKAL--------------------------EG---PKQFGSLAEYTAVEER--LLAPKPKN  205 (262)
Q Consensus       157 vG~~v~~~~~Gd~V~~~~~~~~~--------------------------~~---~~~~G~~ae~~~v~~~--~~~~lP~~  205 (262)
                      +|++|+.|++||+|++.....|.                          .+   ....|+|+||++++++  .++++|++
T Consensus        75 vG~~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~iP~~  154 (398)
T 2dph_A           75 KGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDK  154 (398)
T ss_dssp             ECTTCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEECSSH
T ss_pred             ECCCCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEECCCC
Confidence            99999999999999975321110                          01   1246999999999987  89999999


Q ss_pred             CCHhh----HhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          206 LDFVQ----AAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       206 ~~~~~----aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      +++++    ++.++.++.|||++++++++++|++|||+| +|++|++++|+||.+|+ +|+
T Consensus       155 ~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi  214 (398)
T 2dph_A          155 EQAMEKIKDLTLISDILPTGFHGCVSAGVKPGSHVYIAG-AGPVGRCAAAGARLLGAACVI  214 (398)
T ss_dssp             HHHHHTHHHHTTTTTHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHTCSEEE
T ss_pred             CChhhhcchhhhhcCHHHHHHHHHHHcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence            99988    888899999999999889999999999999 59999999999999999 664

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.98  E-value=7.2e-32  Score=242.56  Aligned_cols=173  Identities=29%  Similarity=0.396  Sum_probs=150.2

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      ++||++++++++.++.++++ +.+.|++++|||+|||.+++||++|++.++|..+.. ..+|.++|||++|+|+++  ++
T Consensus         2 ~~mka~~~~~~g~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~p~v~G~E~~G~V~~~--~v   77 (328)
T 1xa0_A            2 SAFQAFVVNKTETEFTAGVQ-TISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIV-KTYPFVPGIDLAGVVVSS--QH   77 (328)
T ss_dssp             CEEEEEEEEEETTEEEEEEE-EEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSC-CSSSBCCCSEEEEEEEEC--CS
T ss_pred             CcceEEEEecCCCcceeEEE-eccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCC-CCCCcccCcceEEEEEec--CC
Confidence            36999999999876668888 899999999999999999999999999998865422 457899999999999996  57


Q ss_pred             CCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH---HcCCCCCC-EEE
Q 024775          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE---RTGFSAGK-SIL  237 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~---~~~~~~g~-~Vl  237 (262)
                      +.|++||+|++....   .+....|+|+||++++++.++++|+++++++++.+++++.|||.++.   +.++++|+ +||
T Consensus        78 ~~~~vGdrV~~~~~~---~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~Vl  154 (328)
T 1xa0_A           78 PRFREGDEVIATGYE---IGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVL  154 (328)
T ss_dssp             SSCCTTCEEEEESTT---BTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEE
T ss_pred             CCCCCCCEEEEcccc---CCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEE
Confidence            889999999986421   12234699999999999999999999999999999999999998873   56899997 999


Q ss_pred             EEcCchHHHHHHHHHHHHcCCccC
Q 024775          238 VLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       238 I~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |+|++|++|++++|+||.+|++|+
T Consensus       155 V~Ga~G~vG~~~~q~a~~~Ga~vi  178 (328)
T 1xa0_A          155 VTGATGGVGSLAVSMLAKRGYTVE  178 (328)
T ss_dssp             ESSTTSHHHHHHHHHHHHTTCCEE
T ss_pred             EecCCCHHHHHHHHHHHHCCCEEE
Confidence            999889999999999999999874

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.98  E-value=7.1e-32  Score=248.88  Aligned_cols=170  Identities=22%  Similarity=0.305  Sum_probs=146.5

Q ss_pred             ceeEEEEcccCCcceEEEEeeecCCCCC-CCe------EEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEE
Q 024775           83 EMKAWLYGEYGGVDVLKFDEKVTVPQVK-EDQ------VLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVV  155 (262)
Q Consensus        83 ~~ka~v~~~~g~~~~l~~~~~~~~p~~~-~~e------VlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv  155 (262)
                      +|||+++.+++.   ++++ +.+.|++. ++|      |||||.+++||++|++.++|..+   .++|.++|||++|+|+
T Consensus         2 ~Mka~~~~~~~~---l~~~-~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~---~~~p~v~GhE~~G~V~   74 (398)
T 1kol_A            2 GNRGVVYLGSGK---VEVQ-KIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT---AQVGLVLGHEITGEVI   74 (398)
T ss_dssp             CEEEEEEEETTE---EEEE-EECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC---CCTTCBCCCCEEEEEE
T ss_pred             ccEEEEEecCCc---eEEE-EecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC---CCCCcccCcccEEEEE
Confidence            599999998764   7777 89999997 888      99999999999999999998643   4568999999999999


Q ss_pred             EeCCCCCCCCCCCEEEEecCccc-------------c-----------CCC----CCCCceeeEEEecCC--CeEECCCC
Q 024775          156 KVGTQVKEFKEGDEVYGDINEKA-------------L-----------EGP----KQFGSLAEYTAVEER--LLAPKPKN  205 (262)
Q Consensus       156 ~vG~~v~~~~~Gd~V~~~~~~~~-------------~-----------~~~----~~~G~~ae~~~v~~~--~~~~lP~~  205 (262)
                      ++|++|++|++||+|++.....|             |           .+.    ...|+|+||+++++.  .++++|++
T Consensus        75 ~vG~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P~~  154 (398)
T 1kol_A           75 EKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDR  154 (398)
T ss_dssp             EECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCH
T ss_pred             EECCCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEECCCC
Confidence            99999999999999986421111             0           011    246999999999986  89999999


Q ss_pred             CCHhh----HhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-cc
Q 024775          206 LDFVQ----AAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FF  260 (262)
Q Consensus       206 ~~~~~----aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V  260 (262)
                      +++++    ++.++.++.|||++++++++++|++|||+| +|++|++++|+||.+|+ +|
T Consensus       155 ~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~G-aG~vG~~aiqlAk~~Ga~~V  213 (398)
T 1kol_A          155 DKAMEKIRDLTCLSDILPTGYHGAVTAGVGPGSTVYVAG-AGPVGLAAAASARLLGAAVV  213 (398)
T ss_dssp             HHHHHTHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCSEE
T ss_pred             cchhhhcccccccccHHHHHHHHHHHcCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCCeE
Confidence            98887    788899999999999989999999999999 69999999999999999 45

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.97  E-value=2.5e-31  Score=246.05  Aligned_cols=177  Identities=21%  Similarity=0.267  Sum_probs=144.9

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCC-CCCCeEEEEEEEEecChhhHHhHcCCCCC-----CCCCCCCCCCccEEEE
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQ-VKEDQVLIKVVAAALNPVDGKRRQGKFKA-----TDSPLPTVPGYDVAGV  153 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~-~~~~eVlVkV~a~~i~~sD~~~~~g~~~~-----~~~~~p~~~G~e~vG~  153 (262)
                      .|.+|+++++...+   .++++ +++.|+ +++|||||||.+++||++|++.+.|....     ...++|.++|||++|+
T Consensus        27 ~~~~m~a~~~~~~~---~l~~~-~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~  102 (404)
T 3ip1_A           27 GKLTWLGSKVWRYP---EVRVE-EVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGV  102 (404)
T ss_dssp             TTBBSCGGGTEEEE---EEEEE-EECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEE
T ss_pred             hhhhcceEEEEeCC---ceEEE-EcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEE
Confidence            34445555554444   47887 999999 99999999999999999999999864211     1246789999999999


Q ss_pred             EEEeCCCC------CCCCCCCEEEEecCccc------------------cCCCCCCCceeeEEEecCCCeEECCCCCC--
Q 024775          154 VVKVGTQV------KEFKEGDEVYGDINEKA------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLD--  207 (262)
Q Consensus       154 Vv~vG~~v------~~~~~Gd~V~~~~~~~~------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~--  207 (262)
                      |+++|++|      +.|++||+|++.....|                  ..+....|+|+||++++++.++++|+.++  
T Consensus       103 V~~vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~  182 (404)
T 3ip1_A          103 VVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVY  182 (404)
T ss_dssp             EEEECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEECGGGBTTB
T ss_pred             EEEECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccccCCCCCCCCcceEEechHHeEecccccccc
Confidence            99999999      89999999998532111                  12334579999999999999999999875  


Q ss_pred             ----HhhHhcccchHHHHHHHHH-H-cCCCCCCEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          208 ----FVQAAGLPLAIETAYEGLE-R-TGFSAGKSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       208 ----~~~aa~l~~~~~tA~~al~-~-~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                          +.++++++.++.|||+++. + +++++|++|||+|+ |++|++++|+||.+|+ +|+
T Consensus       183 ~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi  242 (404)
T 3ip1_A          183 EGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGG-GPIGLAAVAILKHAGASKVI  242 (404)
T ss_dssp             CTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEE
T ss_pred             ccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEE
Confidence                4568888999999999995 3 48999999999995 9999999999999999 653

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.97  E-value=1.3e-31  Score=243.89  Aligned_cols=168  Identities=21%  Similarity=0.199  Sum_probs=144.4

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCC---CCCCCccEEEEEEEeCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL---PTVPGYDVAGVVVKVGTQ  160 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~---p~~~G~e~vG~Vv~vG~~  160 (262)
                      |||++++++++.  ++++ +.+.|++++|||||||.+++||++|++.++|.++.  .++   |.++|||++| |+++|++
T Consensus         1 MkA~~~~~~~~~--l~~~-~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~~~p~v~G~E~~G-V~~vG~~   74 (357)
T 2b5w_A            1 MKAIAVKRGEDR--PVVI-EKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGG--FPEGEDHLVLGHEAVG-VVVDPND   74 (357)
T ss_dssp             CEEEEEETTCSS--CEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTT--SCTTCSEEECCSEEEE-EEEECTT
T ss_pred             CeEEEEeCCCCc--eEEE-ECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCC--CCCCCCCcccCceeEE-EEEECCC
Confidence            899999998872  6666 88999999999999999999999999999987543  345   8899999999 9999999


Q ss_pred             CCCCCCCCEEEEecCcc--c-------------cC-------CC-CCCCceeeEEEecCCCeEECCCCCCHhhHhcccch
Q 024775          161 VKEFKEGDEVYGDINEK--A-------------LE-------GP-KQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLA  217 (262)
Q Consensus       161 v~~~~~Gd~V~~~~~~~--~-------------~~-------~~-~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~  217 (262)
                       ++|++||+|++.....  |             +.       +. ...|+|+||++++++.++++|++++ ++ ++++.+
T Consensus        75 -~~~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~-~~-aal~~~  151 (357)
T 2b5w_A           75 -TELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-EL-GFLIEP  151 (357)
T ss_dssp             -SSCCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEECCGGGS-TT-GGGHHH
T ss_pred             -CCCCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEECCCCcc-hh-hhhhch
Confidence             9999999999863211  1             00       11 2369999999999999999999999 54 557789


Q ss_pred             HHHHHHHHHHcCCCCC------CEEEEEcCchHHHHHH-HHHH-HHcCCc-cC
Q 024775          218 IETAYEGLERTGFSAG------KSILVLNGSGGVGSLV-IQVC-YYYLEF-FF  261 (262)
Q Consensus       218 ~~tA~~al~~~~~~~g------~~VlI~Ga~G~vG~~a-iqlA-k~~Ga~-V~  261 (262)
                      +.|||++++++++++|      ++|||+|+ |++|+++ +|+| |.+|++ |+
T Consensus       152 ~~ta~~al~~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi  203 (357)
T 2b5w_A          152 ISITEKALEHAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLY  203 (357)
T ss_dssp             HHHHHHHHHHHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHHHHhcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEE
Confidence            9999999988889999      99999997 9999999 9999 999997 64

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.97  E-value=9e-31  Score=236.12  Aligned_cols=163  Identities=20%  Similarity=0.189  Sum_probs=141.8

Q ss_pred             ccceeEEEEccc--C--CcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCcc----EEE
Q 024775           81 PSEMKAWLYGEY--G--GVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYD----VAG  152 (262)
Q Consensus        81 p~~~ka~v~~~~--g--~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e----~vG  152 (262)
                      +.+||+|++++.  |  .++.++++ +.+.|+|++|||+|||.+++||++|++.+.+...   ..+|.++|||    ++|
T Consensus         5 ~~~mka~v~~~~~~g~~~~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~---~~~p~~~G~e~g~~~~G   80 (336)
T 4b7c_A            5 SQINRQYQLAQRPSGLPGRDTFSFV-ETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARS---YIPPVGIGEVMRALGVG   80 (336)
T ss_dssp             -CEEEEEEECSCCSSSCCTTSEEEE-EEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCC---SSCCCCTTSBCCCEEEE
T ss_pred             cccccEEEEEecCCCCCCCCceEEE-eccCCCCCCCEEEEEEEEEEeCHHHHhhhhcccc---cCCCCCCCcccCCceEE
Confidence            366999999862  3  34668888 9999999999999999999999999998876432   2345666766    899


Q ss_pred             EEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhH--hcccchHHHHHHHH-HHcC
Q 024775          153 VVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQA--AGLPLAIETAYEGL-ERTG  229 (262)
Q Consensus       153 ~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~a--a~l~~~~~tA~~al-~~~~  229 (262)
                      +|++.  +++.|++||+|++            .|+|+||++++++.++++|+++++.++  +.+++++.|||+++ +..+
T Consensus        81 ~V~~~--~v~~~~vGdrV~~------------~G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~  146 (336)
T 4b7c_A           81 KVLVS--KHPGFQAGDYVNG------------ALGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQ  146 (336)
T ss_dssp             EEEEE--CSTTCCTTCEEEE------------ECCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTC
T ss_pred             EEEec--CCCCCCCCCEEec------------cCCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcC
Confidence            99994  5889999999997            489999999999999999999977776  77899999999999 5689


Q ss_pred             CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          230 FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       230 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +++|++|||+|++|++|++++|+|+..|++|+
T Consensus       147 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi  178 (336)
T 4b7c_A          147 PKNGETVVISGAAGAVGSVAGQIARLKGCRVV  178 (336)
T ss_dssp             CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            99999999999889999999999999999875

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.97  E-value=1.1e-31  Score=246.41  Aligned_cols=168  Identities=21%  Similarity=0.195  Sum_probs=148.2

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC----------------------
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA----------------------  137 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~----------------------  137 (262)
                      .+..||++++...  ...++++ +.+.|++++|||||||.+++||++|++.++|..+.                      
T Consensus         4 ~~~~mka~v~~~~--~~~l~~~-~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~   80 (379)
T 3iup_A            4 SALQLRSRIKSSG--ELELSLD-SIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGA   80 (379)
T ss_dssp             EEEEEEEEECTTS--EEEEEEE-EEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHH
T ss_pred             chhhHHHHHhcCC--CCceEEE-eccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcccc
Confidence            4677999987532  2348888 89999999999999999999999999999885310                      


Q ss_pred             -----CCCCCCCCCCccEEEEEEEeCCCC-CCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhH
Q 024775          138 -----TDSPLPTVPGYDVAGVVVKVGTQV-KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQA  211 (262)
Q Consensus       138 -----~~~~~p~~~G~e~vG~Vv~vG~~v-~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~a  211 (262)
                           ...++|.++|||++|+|+++|++| ++|++||+|++..          .|+|+||++++++.++++|++++++++
T Consensus        81 ~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~----------~G~~aey~~v~~~~~~~iP~~~~~~~a  150 (379)
T 3iup_A           81 MRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG----------GAMYSQYRCIPADQCLVLPEGATPADG  150 (379)
T ss_dssp             HHHHGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC----------SCCSBSEEEEEGGGEEECCTTCCHHHH
T ss_pred             ccccccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC----------CCcceeEEEeCHHHeEECCCCCCHHHH
Confidence                 013568899999999999999999 8999999999865          599999999999999999999999999


Q ss_pred             hcccchHHHHHHHHHHcCCCCCCEEEEEc-CchHHHHHHHHHHHHcCCccC
Q 024775          212 AGLPLAIETAYEGLERTGFSAGKSILVLN-GSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       212 a~l~~~~~tA~~al~~~~~~~g~~VlI~G-a~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +.+++...|||+++++.. ++|++|||+| |+|++|++++|+||.+|++|+
T Consensus       151 a~l~~~~~ta~~~~~~~~-~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi  200 (379)
T 3iup_A          151 ASSFVNPLTALGMVETMR-LEGHSALVHTAAASNLGQMLNQICLKDGIKLV  200 (379)
T ss_dssp             TTSSHHHHHHHHHHHHHH-HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEE
T ss_pred             HhhhhhHHHHHHHHHHhc-cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEE
Confidence            999999999999887766 9999999996 799999999999999999875

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.97  E-value=1.1e-30  Score=237.59  Aligned_cols=168  Identities=17%  Similarity=0.223  Sum_probs=145.1

Q ss_pred             CcccceeEEEE-ccc---CCc--ceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCC---CCCCCCCCCCCCc
Q 024775           79 TVPSEMKAWLY-GEY---GGV--DVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKF---KATDSPLPTVPGY  148 (262)
Q Consensus        79 ~~p~~~ka~v~-~~~---g~~--~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~---~~~~~~~p~~~G~  148 (262)
                      .+|.+||++++ +++   |.+  +.++++ +.+.|++ ++|||+|||.+++||++|++.+.+..   ...+.++|.++||
T Consensus         4 ~~~~~mka~v~~~~~~~~g~p~~~~l~~~-~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~   82 (357)
T 2zb4_A            4 AAAMIVQRVVLNSRPGKNGNPVAENFRME-EVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDG   82 (357)
T ss_dssp             --CCEEEEEEECCCCCTTSCCCGGGEEEE-EEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEE
T ss_pred             cccccceEEEEeccCCCCCCCCcCceEEE-eecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccc
Confidence            46788999999 565   544  668888 8999999 99999999999999999998877521   1112457899999


Q ss_pred             cEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCC-----CHhhHhcccchHHHHHH
Q 024775          149 DVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNL-----DFVQAAGLPLAIETAYE  223 (262)
Q Consensus       149 e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~-----~~~~aa~l~~~~~tA~~  223 (262)
                      |++|+|++  ++|++|++||+|++.           .|+|+||++++++.++++|+++     +++ +++++.++.|||+
T Consensus        83 E~~G~V~~--~~v~~~~vGdrV~~~-----------~G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~  148 (357)
T 2zb4_A           83 GGIGIIEE--SKHTNLTKGDFVTSF-----------YWPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLI  148 (357)
T ss_dssp             EEEEEEEE--ECSTTCCTTCEEEEE-----------EEESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHH
T ss_pred             cEEEEEEe--cCCCCCCCCCEEEec-----------CCCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHH
Confidence            99999999  889999999999985           3799999999999999999998     555 6778899999999


Q ss_pred             HH-HHcCCCCC--CEEEEEcCchHHHHHHHHHHHHcCC-ccC
Q 024775          224 GL-ERTGFSAG--KSILVLNGSGGVGSLVIQVCYYYLE-FFF  261 (262)
Q Consensus       224 al-~~~~~~~g--~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V~  261 (262)
                      ++ +..++++|  ++|||+|++|++|++++|+|+..|+ +|+
T Consensus       149 al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi  190 (357)
T 2zb4_A          149 GIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVV  190 (357)
T ss_dssp             HHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEE
T ss_pred             HHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEE
Confidence            99 57899999  9999999889999999999999999 774

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.97  E-value=1.1e-29  Score=226.02  Aligned_cols=153  Identities=32%  Similarity=0.462  Sum_probs=138.3

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||++++++++++.+  + +.+.|++++|||+|||.+++||++|++.+.|.++.. .++|.++|||++|+|+        
T Consensus         1 Mka~~~~~~g~~~~l--~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~p~i~G~e~~G~V~--------   68 (302)
T 1iz0_A            1 MKAWVLKRLGGPLEL--V-DLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTR-LHPPFIPGMEVVGVVE--------   68 (302)
T ss_dssp             CEEEEECSTTSCEEE--E-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSC-CCSSBCCCCEEEEEET--------
T ss_pred             CeEEEEcCCCCchhe--E-ECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCC-CCCCCcccceEEEEEE--------
Confidence            899999999887544  3 788899999999999999999999999999866532 3578999999999997        


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCc
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGS  242 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~  242 (262)
                         ||+|++...         .|+|+||++++++.++++|++++++++++++.++.|||+++. .. +++|++|||+|++
T Consensus        69 ---GdrV~~~~~---------~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~  135 (302)
T 1iz0_A           69 ---GRRYAALVP---------QGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAA  135 (302)
T ss_dssp             ---TEEEEEECS---------SCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTT
T ss_pred             ---CcEEEEecC---------CcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCC
Confidence               999998752         699999999999999999999999999999999999999997 46 9999999999988


Q ss_pred             hHHHHHHHHHHHHcCCccC
Q 024775          243 GGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       243 G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |++|++++|+|+.+|++|+
T Consensus       136 G~vG~~~~~~a~~~Ga~Vi  154 (302)
T 1iz0_A          136 GALGTAAVQVARAMGLRVL  154 (302)
T ss_dssp             BHHHHHHHHHHHHTTCEEE
T ss_pred             cHHHHHHHHHHHHCCCEEE
Confidence            9999999999999999874

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.97  E-value=6.1e-30  Score=254.76  Aligned_cols=193  Identities=23%  Similarity=0.272  Sum_probs=162.4

Q ss_pred             ceecccCCCCCCCCcccccccccccCCCCCCCCCCCCCcccceeEEEEcccCCcceEEEEeeec--CCCCCCCeEEEEEE
Q 024775           42 KVTTLKQGSFSYLPLGVQASASQAAASSTEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVT--VPQVKEDQVLIKVV  119 (262)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ka~v~~~~g~~~~l~~~~~~~--~p~~~~~eVlVkV~  119 (262)
                      ..++..+++....||.......   .   ...     ........+.+..+|.++.|+++ +.+  .|++++|||+|||.
T Consensus       179 E~E~a~r~G~~~V~Rl~~~~~~---~---~~~-----~~~~~~~~l~~~~~G~~~~L~~~-~~~~p~~~~~~~eVlV~V~  246 (795)
T 3slk_A          179 EPQLALRRGGAHAPRLAGLGSD---D---VLP-----VPDGTGWRLEATRPGSLDGLALV-DEPTATAPLGDGEVRIAMR  246 (795)
T ss_dssp             CSEEEECSSCEECCEEEESCSS---C---CCC-----CCCSSSCCEEESSTTSSTTEEEC-CCHHHHSCCCSSEEEEEEE
T ss_pred             CceEEEECCcEEEeeeeccccc---c---ccC-----CCCCceEEEecCCCCCccceEEE-eCCccCCCCCCCEEEEEEE
Confidence            4466777777777776632211   0   000     11223456777888988889998 665  46789999999999


Q ss_pred             EEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCe
Q 024775          120 AAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLL  199 (262)
Q Consensus       120 a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~  199 (262)
                      ++|||++|++.+.|.++.     |.++|||++|+|+++|++|++|++||+|+++.          .|+|+||+++++..+
T Consensus       247 a~gin~~D~~~~~G~~~~-----~~~lG~E~aG~V~~vG~~V~~~~vGDrV~~~~----------~G~~ae~~~v~~~~~  311 (795)
T 3slk_A          247 AAGVNFRDALIALGMYPG-----VASLGSEGAGVVVETGPGVTGLAPGDRVMGMI----------PKAFGPLAVADHRMV  311 (795)
T ss_dssp             EEEECHHHHHHTTTCCSS-----CCCSCCCEEEEEEEECSSCCSSCTTCEEEECC----------SSCSSSEEEEETTSE
T ss_pred             EEccCHHHHHHHcCCCCC-----CccccceeEEEEEEeCCCCCcCCCCCEEEEEe----------cCCCcCEEEeehHHE
Confidence            999999999999987643     46799999999999999999999999999875          599999999999999


Q ss_pred             EECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          200 APKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       200 ~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +++|+++++++++.+++++.|||+++. .+++++|++|||+|++|++|++++|+||.+|++|+
T Consensus       312 ~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~  374 (795)
T 3slk_A          312 TRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEVY  374 (795)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTCCEE
T ss_pred             EECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCCEEE
Confidence            999999999999999999999999985 58999999999999999999999999999999886

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.96  E-value=7.1e-30  Score=233.17  Aligned_cols=167  Identities=19%  Similarity=0.254  Sum_probs=139.8

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCC-CeEEEEEEEEecChhhHHhHcC--CCCCCCCCC---CCCCCccEEEEEEEe
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKE-DQVLIKVVAAALNPVDGKRRQG--KFKATDSPL---PTVPGYDVAGVVVKV  157 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~-~eVlVkV~a~~i~~sD~~~~~g--~~~~~~~~~---p~~~G~e~vG~Vv~v  157 (262)
                      |||++++++++.  ++++ +.+.|++++ |||+|||.+++||++|++.++|  .++.  .++   |.++|||++|+|++ 
T Consensus         1 MkA~~~~~~g~~--l~~~-~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~--~~~~~~p~v~G~E~~G~V~~-   74 (366)
T 2cdc_A            1 MKAIIVKPPNAG--VQVK-DVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLST--LPKGKDFLVLGHEAIGVVEE-   74 (366)
T ss_dssp             CEEEEECTTSCC--CEEE-ECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC---------CCSCEECCSEEEEEECS-
T ss_pred             CeEEEEeCCCCc--eEEE-ECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCC--CCcCCCCCcCCcceEEEEEe-
Confidence            899999998873  6777 889999999 9999999999999999999998  5432  345   89999999999999 


Q ss_pred             CCCCCCCCCCCEEEEecCccc-------------cC-------CCC-CCCceeeEEEecCCCeEECCCCCCHhhHhcccc
Q 024775          158 GTQVKEFKEGDEVYGDINEKA-------------LE-------GPK-QFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL  216 (262)
Q Consensus       158 G~~v~~~~~Gd~V~~~~~~~~-------------~~-------~~~-~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~  216 (262)
                       ++ ++|++||+|++.....|             +.       +.. ..|+|+||++++++.++++|++++ ++|+ ++.
T Consensus        75 -~~-~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~-~~Aa-l~~  150 (366)
T 2cdc_A           75 -SY-HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGI-LAQ  150 (366)
T ss_dssp             -CC-SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEECGGGT-TTGG-GHH
T ss_pred             -CC-CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEECcCCcc-hhhh-hcC
Confidence             67 89999999998542111             00       222 469999999999999999999999 7764 778


Q ss_pred             hHHHHHHHHH-----HcCCC--C-------CCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          217 AIETAYEGLE-----RTGFS--A-------GKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       217 ~~~tA~~al~-----~~~~~--~-------g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++.|||+++.     +.+++  +       |++|||+|+ |++|++++|+|+.+|++|+
T Consensus       151 ~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi  208 (366)
T 2cdc_A          151 PLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVW  208 (366)
T ss_dssp             HHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEE
T ss_pred             cHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEE
Confidence            8999999998     78888  8       999999997 9999999999999999874

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.96  E-value=7.4e-28  Score=216.76  Aligned_cols=160  Identities=20%  Similarity=0.213  Sum_probs=136.4

Q ss_pred             ccceeEEEEccc--CC--cceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEE
Q 024775           81 PSEMKAWLYGEY--GG--VDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (262)
Q Consensus        81 p~~~ka~v~~~~--g~--~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~  156 (262)
                      +.+||+|++.++  |.  ++.++++ +.+.|++++|||+|||.+++||+.|.. +..     +.++|.++|||++|+|++
T Consensus         5 ~~~mka~~~~~~~~g~~~~~~l~~~-e~~~P~~~~~eVlVkv~a~gi~~~~~~-~~~-----~~~~p~~~g~e~~G~Vv~   77 (333)
T 1v3u_A            5 MVKAKSWTLKKHFQGKPTQSDFELK-TVELPPLKNGEVLLEALFLSVDPYMRI-ASK-----RLKEGAVMMGQQVARVVE   77 (333)
T ss_dssp             CCEEEEEEECC-----CCGGGEEEE-EEECCCCCTTCEEEEEEEEECCTHHHH-HTT-----TCCTTSBCCCCEEEEEEE
T ss_pred             cccccEEEEeecCCCCCCccceEEE-eCCCCCCCCCEEEEEEEEeccCHHHcc-ccC-----cCCCCcccccceEEEEEe
Confidence            446999999986  43  3668888 899999999999999999999999873 221     234678999999999999


Q ss_pred             eCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCC----CCHhh-HhcccchHHHHHHHHH-HcCC
Q 024775          157 VGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKN----LDFVQ-AAGLPLAIETAYEGLE-RTGF  230 (262)
Q Consensus       157 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~----~~~~~-aa~l~~~~~tA~~al~-~~~~  230 (262)
                      .  ++++|++||+|++            .|+|+||++++++.++++|++    +++++ ++++++++.|||+++. ..++
T Consensus        78 ~--~v~~~~vGdrV~~------------~g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~  143 (333)
T 1v3u_A           78 S--KNSAFPAGSIVLA------------QSGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGV  143 (333)
T ss_dssp             E--SCTTSCTTCEEEE------------CCCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCC
T ss_pred             c--CCCCCCCCCEEEe------------cCceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCC
Confidence            5  5788999999998            478999999999999999997    88887 4788999999999994 5899


Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++|++|||+|++|++|++++|+++..|++|+
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~  174 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVV  174 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEE
Confidence            9999999999889999999999999999874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.95  E-value=6.2e-28  Score=218.14  Aligned_cols=168  Identities=22%  Similarity=0.301  Sum_probs=137.4

Q ss_pred             cccceeEEEEccc--CCcc--eEEEEe-eecCCC-CCCCeEEEEEEEEecChhhHHhHcCCCCCCC--CCCCCCCCccEE
Q 024775           80 VPSEMKAWLYGEY--GGVD--VLKFDE-KVTVPQ-VKEDQVLIKVVAAALNPVDGKRRQGKFKATD--SPLPTVPGYDVA  151 (262)
Q Consensus        80 ~p~~~ka~v~~~~--g~~~--~l~~~~-~~~~p~-~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~--~~~p~~~G~e~v  151 (262)
                      ||.+||+|++...  +.+.  .+++++ +.+.|. +++|||||||.++++|+.|. .+.|......  ..+|+++|||++
T Consensus         1 m~~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~   79 (345)
T 2j3h_A            1 MTATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQ   79 (345)
T ss_dssp             CEEEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCE
T ss_pred             CCccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeee
Confidence            5778999999886  5444  577752 567776 89999999999999998885 3444332110  235789999999


Q ss_pred             EEEEE--eCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCC--eEECCC---CCCHhhHhcccchHHHHHHH
Q 024775          152 GVVVK--VGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERL--LAPKPK---NLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       152 G~Vv~--vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~--~~~lP~---~~~~~~aa~l~~~~~tA~~a  224 (262)
                      |++++  ||+++++|++||+|++            .|+|+||+++++..  ++++|+   .++++ ++++++++.|||++
T Consensus        80 G~~~~GvV~~~v~~~~vGdrV~~------------~g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~a  146 (345)
T 2j3h_A           80 GYGVSRIIESGHPDYKKGDLLWG------------IVAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAG  146 (345)
T ss_dssp             EEEEEEEEEECSTTCCTTCEEEE------------EEESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHH
T ss_pred             cceEEEEEecCCCCCCCCCEEEe------------ecCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHH
Confidence            99999  9999999999999987            37899999999876  999996   35555 67788899999999


Q ss_pred             HH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          225 LE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       225 l~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +. .+++++|++|||+|++|++|++++|+|+..|++|+
T Consensus       147 l~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~  184 (345)
T 2j3h_A          147 FYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVV  184 (345)
T ss_dssp             HHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            95 58999999999999889999999999999999875

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.82  E-value=4.4e-20  Score=201.30  Aligned_cols=155  Identities=23%  Similarity=0.250  Sum_probs=131.4

Q ss_pred             EEEcccCCcceEEEEeeecCCC-C--CCCeEEEEEEEEecChhhHHhHcCCCCCC-----CCCCCCCCCccEEEEEEEeC
Q 024775           87 WLYGEYGGVDVLKFDEKVTVPQ-V--KEDQVLIKVVAAALNPVDGKRRQGKFKAT-----DSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        87 ~v~~~~g~~~~l~~~~~~~~p~-~--~~~eVlVkV~a~~i~~sD~~~~~g~~~~~-----~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      +....+|..+.+.|. +.+... +  .++||+|+|.++|+|+.|++.+.|..+..     ....|.++|+|++|+|.   
T Consensus      1533 l~~~~~g~l~sl~~~-~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~--- 1608 (2512)
T 2vz8_A         1533 VNVLSRGDLSSIRWV-CSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA--- 1608 (2512)
T ss_dssp             EEESSTTCTTSEEEE-ECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET---
T ss_pred             EEccCCCCcCceEEE-ecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc---
Confidence            344556667778887 544332 3  37999999999999999999999876431     12345789999999872   


Q ss_pred             CCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEE
Q 024775          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSIL  237 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~Vl  237 (262)
                             +||+|+++..         .|+|+||++++++.++++|+++++++++.+++.+.|||+++. .+++++|++||
T Consensus      1609 -------vGdrV~g~~~---------~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VL 1672 (2512)
T 2vz8_A         1609 -------SGRRVMGMVP---------AEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVL 1672 (2512)
T ss_dssp             -------TSCCEEEECS---------SCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEE
T ss_pred             -------cCCEEEEeec---------CCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEE
Confidence                   7999998763         589999999999999999999999999999999999999995 58899999999


Q ss_pred             EEcCchHHHHHHHHHHHHcCCccC
Q 024775          238 VLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       238 I~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      |+||+|++|++++|+||.+|++|+
T Consensus      1673 I~gaaGgVG~aAiqlAk~~Ga~Vi 1696 (2512)
T 2vz8_A         1673 IHSGSGGVGQAAIAIALSRGCRVF 1696 (2512)
T ss_dssp             ETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             EEeCChHHHHHHHHHHHHcCCEEE
Confidence            999999999999999999999885

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.96  E-value=3.5e-10  Score=93.55  Aligned_cols=65  Identities=26%  Similarity=0.392  Sum_probs=49.8

Q ss_pred             CCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          197 RLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       197 ~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +.++++|+++++++++.+++++.|||+++. ..++++|++|+|+||+|++|++++|+++..|++|+
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~   67 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIY   67 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEE
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEE
Confidence            467899999999999999999999999996 47899999999999999999999999999999874

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.30  E-value=1.8e-07  Score=86.16  Aligned_cols=115  Identities=16%  Similarity=0.116  Sum_probs=82.4

Q ss_pred             CCCCccEEEEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHH
Q 024775          144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYE  223 (262)
Q Consensus       144 ~~~G~e~vG~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~  223 (262)
                      ...|++.++.|..+|.++.++.+|+.++.-.-..++......|++.+|+.+....++.+|+.++.+.++. .....++|.
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~  153 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSA  153 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHH
Confidence            4578999999999999999999999863100000000000136678888777777888888877666544 334557888


Q ss_pred             HHHHcC----CCCCCEEEEEcCchHHHHHHHHHHHHcCC-cc
Q 024775          224 GLERTG----FSAGKSILVLNGSGGVGSLVIQVCYYYLE-FF  260 (262)
Q Consensus       224 al~~~~----~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga-~V  260 (262)
                      +++...    -.+|++|+|+| +|++|.++++.++..|+ +|
T Consensus       154 av~~a~~~~~~l~g~~VlIiG-aG~iG~~~a~~l~~~G~~~V  194 (404)
T 1gpj_A          154 AVELAERELGSLHDKTVLVVG-AGEMGKTVAKSLVDRGVRAV  194 (404)
T ss_dssp             HHHHHHHHHSCCTTCEEEEES-CCHHHHHHHHHHHHHCCSEE
T ss_pred             HHHHHHHHhccccCCEEEEEC-hHHHHHHHHHHHHHCCCCEE
Confidence            775432    35899999999 69999999999999998 55

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=93.85  E-value=0.051  Score=50.98  Aligned_cols=44  Identities=18%  Similarity=0.198  Sum_probs=36.6

Q ss_pred             hHHHHHHHHHHcC--CCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          217 AIETAYEGLERTG--FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       217 ~~~tA~~al~~~~--~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ...+.|+++.+..  ..+|++|+|+| .|.+|+.+++.++.+|++|+
T Consensus       256 ~~~s~~~g~~r~~~~~l~GktV~IiG-~G~IG~~~A~~lka~Ga~Vi  301 (494)
T 3ce6_A          256 TRHSLIDGINRGTDALIGGKKVLICG-YGDVGKGCAEAMKGQGARVS  301 (494)
T ss_dssp             HHHHHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             hhhhhhHHHHhccCCCCCcCEEEEEc-cCHHHHHHHHHHHHCCCEEE
Confidence            3456677776543  78999999999 89999999999999999874

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=93.55  E-value=0.18  Score=41.61  Aligned_cols=38  Identities=13%  Similarity=0.206  Sum_probs=30.4

Q ss_pred             HHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          221 AYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       221 A~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +.+.+....+++|++||..| +| .|..++++++. +.+|+
T Consensus        80 ~~~~~~~~~~~~~~~vldiG-~G-~G~~~~~l~~~-~~~v~  117 (248)
T 2yvl_A           80 SFYIALKLNLNKEKRVLEFG-TG-SGALLAVLSEV-AGEVW  117 (248)
T ss_dssp             HHHHHHHTTCCTTCEEEEEC-CT-TSHHHHHHHHH-SSEEE
T ss_pred             HHHHHHhcCCCCCCEEEEeC-CC-ccHHHHHHHHh-CCEEE
Confidence            34556778899999999998 77 59999999988 66653

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.59  E-value=0.12  Score=46.58  Aligned_cols=29  Identities=17%  Similarity=0.165  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +|++|+|+| +|.+|+.++++|+.+|++|+
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~~Ga~V~  199 (384)
T 1l7d_A          171 PPARVLVFG-VGVAGLQAIATAKRLGAVVM  199 (384)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            689999999 89999999999999999763

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=91.28  E-value=0.14  Score=45.74  Aligned_cols=29  Identities=14%  Similarity=0.118  Sum_probs=25.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++++|+|+| +|++|++++++++.+|++|+
T Consensus       166 ~~~~VlViG-aGgvG~~aa~~a~~~Ga~V~  194 (361)
T 1pjc_A          166 KPGKVVILG-GGVVGTEAAKMAVGLGAQVQ  194 (361)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence            348999999 59999999999999999764

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=91.22  E-value=0.14  Score=46.61  Aligned_cols=29  Identities=14%  Similarity=0.147  Sum_probs=26.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +|++|+|+| +|.+|+.++++|+.+|++|+
T Consensus       171 ~g~~V~ViG-aG~iG~~aa~~a~~~Ga~V~  199 (401)
T 1x13_A          171 PPAKVMVIG-AGVAGLAAIGAANSLGAIVR  199 (401)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            588999999 89999999999999999763

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=90.84  E-value=0.046  Score=41.94  Aligned_cols=40  Identities=15%  Similarity=0.085  Sum_probs=31.9

Q ss_pred             HHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775          220 TAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF  260 (262)
Q Consensus       220 tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V  260 (262)
                      .++.+++.+....+++|+|+| +|.+|...++.++..|++|
T Consensus         8 v~~~a~~~~~~~~~~~v~iiG-~G~iG~~~a~~l~~~g~~v   47 (144)
T 3oj0_A            8 IPSIVYDIVRKNGGNKILLVG-NGMLASEIAPYFSYPQYKV   47 (144)
T ss_dssp             HHHHHHHHHHHHCCCEEEEEC-CSHHHHHHGGGCCTTTCEE
T ss_pred             HHHHHHHHHHhccCCEEEEEC-CCHHHHHHHHHHHhCCCEE
Confidence            477777665555599999999 7999999988888777653

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=90.38  E-value=0.19  Score=45.28  Aligned_cols=29  Identities=10%  Similarity=0.100  Sum_probs=26.5

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +|++|+|+| +|.+|+.+++.++.+|++|+
T Consensus       167 ~g~~V~ViG-~G~iG~~~a~~a~~~Ga~V~  195 (377)
T 2vhw_A          167 EPADVVVIG-AGTAGYNAARIANGMGATVT  195 (377)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence            689999999 59999999999999999774

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=89.76  E-value=0.25  Score=41.93  Aligned_cols=30  Identities=23%  Similarity=0.215  Sum_probs=26.8

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .++++||.||+|++|+..++.+...|++|+
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~   60 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVV   60 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence            578999999999999999998888898874

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=89.75  E-value=0.24  Score=44.43  Aligned_cols=29  Identities=24%  Similarity=0.308  Sum_probs=26.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+++|+|+|+ |++|+.+++.++.+|++|+
T Consensus       165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~  193 (369)
T 2eez_A          165 APASVVILGG-GTVGTNAAKIALGMGAQVT  193 (369)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEE
Confidence            4689999995 9999999999999999874

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=89.14  E-value=0.29  Score=41.67  Aligned_cols=31  Identities=16%  Similarity=0.237  Sum_probs=27.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      -.|.++||.||+|++|...++.+...|++|+
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~   59 (273)
T 3uf0_A           29 LAGRTAVVTGAGSGIGRAIAHGYARAGAHVL   59 (273)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            3578999999999999999988888899874

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=89.11  E-value=0.29  Score=42.05  Aligned_cols=30  Identities=23%  Similarity=0.282  Sum_probs=27.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|+++||.||+|++|...++.+...|++|+
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~   75 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIA   75 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            678999999999999999998888999874

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=89.01  E-value=0.3  Score=42.21  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=27.6

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      -.|+++||.||+|++|+..++.+...|++|+
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~   59 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLV   59 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            4688999999999999999998888898874

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=88.73  E-value=0.33  Score=41.43  Aligned_cols=30  Identities=23%  Similarity=0.183  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|+++||.||+|++|...++.+...|++|+
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~   60 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVA   60 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999988888899874

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=88.65  E-value=0.33  Score=41.27  Aligned_cols=31  Identities=26%  Similarity=0.279  Sum_probs=27.3

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      -.|+++||.||+|++|.+.++.+...|++|+
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~   59 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVA   59 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            3678999999999999999988888999874

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=88.16  E-value=0.29  Score=41.74  Aligned_cols=30  Identities=20%  Similarity=0.236  Sum_probs=27.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|+++||.||++++|.+.++.+...|++|+
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~   61 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVI   61 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999998888899874

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=88.13  E-value=0.63  Score=39.38  Aligned_cols=37  Identities=14%  Similarity=0.073  Sum_probs=28.4

Q ss_pred             HHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHc--CCccC
Q 024775          223 EGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYY--LEFFF  261 (262)
Q Consensus       223 ~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~--Ga~V~  261 (262)
                      ..+....++++++||-.| +|. |..++.+++..  +.+|+
T Consensus       103 ~i~~~~~~~~~~~VLDiG-~G~-G~~~~~la~~~~~~~~v~  141 (277)
T 1o54_A          103 FIAMMLDVKEGDRIIDTG-VGS-GAMCAVLARAVGSSGKVF  141 (277)
T ss_dssp             HHHHHTTCCTTCEEEEEC-CTT-SHHHHHHHHHTTTTCEEE
T ss_pred             HHHHHhCCCCCCEEEEEC-CcC-CHHHHHHHHHhCCCcEEE
Confidence            344567899999999998 777 88889999885  34543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=88.10  E-value=0.37  Score=41.42  Aligned_cols=30  Identities=17%  Similarity=0.111  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|+++||.||+|++|+..++.....|++|+
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~   77 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVA   77 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999998888999874

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=88.10  E-value=0.38  Score=40.69  Aligned_cols=30  Identities=17%  Similarity=0.256  Sum_probs=26.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+.++||.||+|++|...++.+...|++|+
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~   59 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLV   59 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence            578999999999999999998888898874

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=88.09  E-value=0.26  Score=42.13  Aligned_cols=31  Identities=26%  Similarity=0.202  Sum_probs=25.7

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      -.|+++||.||+|++|.+.++.+...|++|+
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~   61 (281)
T 4dry_A           31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVV   61 (281)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence            4688999999999999999988888899874

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=87.89  E-value=0.37  Score=43.99  Aligned_cols=29  Identities=17%  Similarity=0.166  Sum_probs=26.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++.+|+|+| +|.+|+.++++|+.+|++|+
T Consensus       189 ~~~kV~ViG-~G~iG~~aa~~a~~lGa~V~  217 (405)
T 4dio_A          189 PAAKIFVMG-AGVAGLQAIATARRLGAVVS  217 (405)
T ss_dssp             CCCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHCCCEEE
Confidence            678999999 89999999999999999874

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=87.84  E-value=0.4  Score=41.15  Aligned_cols=31  Identities=26%  Similarity=0.189  Sum_probs=27.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ..|.+++|+||+|++|.+++..+...|++|+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~  147 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVV  147 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEE
Confidence            3688999999999999999999988998763

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=87.63  E-value=0.32  Score=42.00  Aligned_cols=30  Identities=23%  Similarity=0.266  Sum_probs=27.2

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|+++||.||+|++|...++.+...|++|+
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~   69 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVA   69 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence            688999999999999999998888999874

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=87.59  E-value=0.38  Score=43.56  Aligned_cols=29  Identities=21%  Similarity=0.040  Sum_probs=26.7

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++.+|+|+| .|.+|+.++++++.+|++|+
T Consensus       183 ~~~kV~ViG-~G~iG~~aa~~a~~lGa~V~  211 (381)
T 3p2y_A          183 KPASALVLG-VGVAGLQALATAKRLGAKTT  211 (381)
T ss_dssp             CCCEEEEES-CSHHHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEEC-chHHHHHHHHHHHHCCCEEE
Confidence            678999999 89999999999999999874

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=87.32  E-value=0.36  Score=42.02  Aligned_cols=31  Identities=13%  Similarity=-0.015  Sum_probs=27.7

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      -.|+++||.||+|++|+..++.....|++|+
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~~Vv   74 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGADIV   74 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEE
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCeEE
Confidence            4688999999999999999998888999874

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=86.95  E-value=0.81  Score=39.50  Aligned_cols=48  Identities=13%  Similarity=0.052  Sum_probs=37.9

Q ss_pred             cccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          213 GLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       213 ~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ..|+........+++.+ -.|.+++|.|.++.+|..+++++...|++|+
T Consensus       131 ~~PcTp~gv~~lL~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVt  178 (276)
T 3ngx_A          131 LVPATPRAVIDIMDYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNYTVS  178 (276)
T ss_dssp             SCCHHHHHHHHHHHHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             CCCCcHHHHHHHHHHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCCeEE
Confidence            34555555566666666 7899999999777799999999999999875

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=86.90  E-value=0.91  Score=39.36  Aligned_cols=49  Identities=18%  Similarity=0.072  Sum_probs=37.7

Q ss_pred             cccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       213 ~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ..++........+++..+ -.|.+++|.|.++.+|..+++++...|++|+
T Consensus       140 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVt  189 (285)
T 3l07_A          140 LESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT  189 (285)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE
Confidence            345555555666666655 4899999999666789999999999999875

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=86.68  E-value=0.44  Score=42.28  Aligned_cols=30  Identities=17%  Similarity=0.201  Sum_probs=27.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|+++||.||++++|++.++.+...|++|+
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vv   73 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIV   73 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEE
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEE
Confidence            689999999999999999988888898874

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=86.37  E-value=0.98  Score=39.19  Aligned_cols=49  Identities=18%  Similarity=-0.019  Sum_probs=37.8

Q ss_pred             cccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       213 ~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ..++........|++.++ -.|.+++|.|.++.+|..+++++...||+|+
T Consensus       140 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVt  189 (286)
T 4a5o_A          140 LRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVT  189 (286)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEE
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE
Confidence            345555555666666655 3899999999777799999999999999875

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=86.32  E-value=1.1  Score=40.05  Aligned_cols=35  Identities=20%  Similarity=0.274  Sum_probs=30.0

Q ss_pred             HHcCC--CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          226 ERTGF--SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       226 ~~~~~--~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +..+.  -.|++|.|.| .|.+|+.+++.++.+|++|.
T Consensus       166 ~~~G~~~L~GktV~I~G-~GnVG~~~A~~l~~~GakVv  202 (355)
T 1c1d_A          166 AHRGLGSLDGLTVLVQG-LGAVGGSLASLAAEAGAQLL  202 (355)
T ss_dssp             HHTTCCCSTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             HhcCCCCCCCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence            33444  5899999998 99999999999999999874

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=86.25  E-value=0.4  Score=40.85  Aligned_cols=30  Identities=17%  Similarity=0.248  Sum_probs=26.3

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+.++||.||+|++|...++.+...|++|+
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~   72 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVI   72 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEE
Confidence            478999999999999999888888888764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=86.09  E-value=0.92  Score=41.69  Aligned_cols=41  Identities=24%  Similarity=0.325  Sum_probs=33.3

Q ss_pred             HHHHHHHHc--CCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          220 TAYEGLERT--GFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       220 tA~~al~~~--~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ..+.++.++  ..-.|++|+|.| .|.+|+.+++.++.+|++|.
T Consensus       205 s~~~gi~rat~~~L~GktV~ViG-~G~IGk~vA~~Lra~Ga~Vi  247 (435)
T 3gvp_A          205 SILDGLKRTTDMMFGGKQVVVCG-YGEVGKGCCAALKAMGSIVY  247 (435)
T ss_dssp             HHHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHhhCceecCCEEEEEe-eCHHHHHHHHHHHHCCCEEE
Confidence            345555543  356899999999 99999999999999999874

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=85.92  E-value=1.1  Score=38.81  Aligned_cols=48  Identities=17%  Similarity=0.095  Sum_probs=36.8

Q ss_pred             ccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          214 LPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       214 l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .++........+++..+ -.|.+++|.|.++.+|..+++++...||+|+
T Consensus       140 ~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVt  188 (285)
T 3p2o_A          140 LPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS  188 (285)
T ss_dssp             CCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             CCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE
Confidence            45554445555566554 4899999999777799999999999999875

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=85.49  E-value=0.49  Score=41.45  Aligned_cols=30  Identities=10%  Similarity=-0.119  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|.++||.||+|++|+..++.+...|++|+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv   74 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVC   74 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence            578999999999999999999888999874

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=85.42  E-value=1.1  Score=39.09  Aligned_cols=48  Identities=27%  Similarity=0.214  Sum_probs=37.0

Q ss_pred             ccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          214 LPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       214 l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .++........|++..+ -.|.+++|.|.++.+|..+++++...|++|+
T Consensus       145 ~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVt  193 (300)
T 4a26_A          145 TPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVT  193 (300)
T ss_dssp             CCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             CCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE
Confidence            45555555555666554 4899999999667799999999999999875

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=85.09  E-value=0.44  Score=40.26  Aligned_cols=30  Identities=27%  Similarity=0.176  Sum_probs=26.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+.++||.||+|++|...+..+...|++|+
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~   62 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVA   62 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence            478999999999999998888888898774

>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0

Probab=85.08  E-value=1.4  Score=31.72  Aligned_cols=24  Identities=33%  Similarity=0.397  Sum_probs=19.4

Q ss_pred             EEEEEEEeCCCCC---------CCCCCCEEEEe
Q 024775          150 VAGVVVKVGTQVK---------EFKEGDEVYGD  173 (262)
Q Consensus       150 ~vG~Vv~vG~~v~---------~~~~Gd~V~~~  173 (262)
                      ..|+|++||++..         .+++||+|+..
T Consensus        36 ~~G~VvAVG~G~~~~~G~~~p~~VkvGD~Vl~~   68 (95)
T 3nx6_A           36 TKGEVVAIGAGKPLDNGSLHAPVVKVGDKVIYG   68 (95)
T ss_dssp             EEEEEEEECSCEECTTSCEECCSCCTTCEEEEC
T ss_pred             cccEEEEECCCeECCCCCEEccccCCCCEEEEC
Confidence            4799999998743         48999999763

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=84.88  E-value=0.67  Score=39.94  Aligned_cols=30  Identities=23%  Similarity=0.119  Sum_probs=27.3

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      -.|++|+|+| .|.+|+.+++.++.+|++|+
T Consensus       153 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~  182 (293)
T 3d4o_A          153 IHGANVAVLG-LGRVGMSVARKFAALGAKVK  182 (293)
T ss_dssp             STTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEEe-eCHHHHHHHHHHHhCCCEEE
Confidence            4789999999 99999999999999999764

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=83.41  E-value=0.81  Score=42.31  Aligned_cols=40  Identities=28%  Similarity=0.156  Sum_probs=32.8

Q ss_pred             HHHHHHH-c-CCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          221 AYEGLER-T-GFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       221 A~~al~~-~-~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+.++.+ . ..-.|++|+|.| .|.+|+.+++.++.+|++|+
T Consensus       233 lvdgI~Ratg~~L~GKTVgVIG-~G~IGr~vA~~lrafGa~Vi  274 (464)
T 3n58_A          233 LVDGIRRGTDVMMAGKVAVVCG-YGDVGKGSAQSLAGAGARVK  274 (464)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHhcCCcccCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence            4455544 2 356899999999 99999999999999999874

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=82.99  E-value=0.85  Score=42.58  Aligned_cols=30  Identities=23%  Similarity=0.098  Sum_probs=27.4

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      -.|++++|.| .|++|+.+++.++..|++|+
T Consensus       263 L~GKtVvVtG-aGgIG~aiA~~Laa~GA~Vi  292 (488)
T 3ond_A          263 IAGKVAVVAG-YGDVGKGCAAALKQAGARVI  292 (488)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             ccCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence            5899999999 77999999999999999874

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=82.24  E-value=1.8  Score=37.78  Aligned_cols=49  Identities=20%  Similarity=0.218  Sum_probs=36.7

Q ss_pred             cccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       213 ~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+||........|++..+ -.|.+++|.|++..+|.-+++++...|++|+
T Consensus       144 ~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVt  193 (301)
T 1a4i_A          144 FIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVT  193 (301)
T ss_dssp             CCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEE
T ss_pred             ccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEE
Confidence            345555445555555554 4899999999666789999999999999875

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=82.22  E-value=0.98  Score=38.98  Aligned_cols=30  Identities=17%  Similarity=0.106  Sum_probs=27.2

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      -.|++|+|+| .|.+|+.+++.++.+|++|+
T Consensus       155 l~g~~v~IiG-~G~iG~~~a~~l~~~G~~V~  184 (300)
T 2rir_A          155 IHGSQVAVLG-LGRTGMTIARTFAALGANVK  184 (300)
T ss_dssp             STTSEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCEEEEEc-ccHHHHHHHHHHHHCCCEEE
Confidence            4789999999 89999999999999999764

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=82.05  E-value=1  Score=41.33  Aligned_cols=34  Identities=18%  Similarity=0.147  Sum_probs=27.3

Q ss_pred             cCC-CCCCEEEEEcCchHHHHHHHHHHHH-cCCccC
Q 024775          228 TGF-SAGKSILVLNGSGGVGSLVIQVCYY-YLEFFF  261 (262)
Q Consensus       228 ~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~-~Ga~V~  261 (262)
                      ..+ +.|+++||.||++|+|++.+..+.. .|++|.
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv   90 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTL   90 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEE
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEE
Confidence            455 4688999999999999987766666 899874

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=82.02  E-value=1.8  Score=37.52  Aligned_cols=49  Identities=18%  Similarity=0.000  Sum_probs=37.1

Q ss_pred             cccchHHHHHHHHHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          213 GLPLAIETAYEGLERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       213 ~l~~~~~tA~~al~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+|+........+++..+ -.|.+++|.|++..+|.-+++++...|++|+
T Consensus       138 ~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVt  187 (288)
T 1b0a_A          138 LRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTT  187 (288)
T ss_dssp             SCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEE
T ss_pred             CCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEE
Confidence            345555555555566554 4889999999666789999999999999875

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=81.27  E-value=0.91  Score=38.89  Aligned_cols=27  Identities=22%  Similarity=0.283  Sum_probs=22.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLE  258 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga  258 (262)
                      .|+++||.||++++|+..++.....|+
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~   58 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASN   58 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCC
Confidence            578999999999999998877766666

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=81.21  E-value=1.1  Score=38.51  Aligned_cols=33  Identities=15%  Similarity=0.068  Sum_probs=27.4

Q ss_pred             CCCCCCEEEEEcCchH--HHHHHHHHHHHcCCccC
Q 024775          229 GFSAGKSILVLNGSGG--VGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       229 ~~~~g~~VlI~Ga~G~--vG~~aiqlAk~~Ga~V~  261 (262)
                      ..-.|+++||.||+|+  +|++.++.+...|++|+
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~   61 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELA   61 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEE
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEE
Confidence            3356899999999965  99999988888898874

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=80.75  E-value=2  Score=36.53  Aligned_cols=29  Identities=21%  Similarity=0.183  Sum_probs=25.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|.+++|+| +|++|.++++.+...|++|+
T Consensus       118 ~~k~vlViG-aGg~g~a~a~~L~~~G~~V~  146 (271)
T 1nyt_A          118 PGLRILLIG-AGGASRGVLLPLLSLDCAVT  146 (271)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHcCCEEE
Confidence            688999999 58999999999999998763

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=80.27  E-value=1.4  Score=40.89  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=27.1

Q ss_pred             CCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          229 GFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       229 ~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      .++++.++||.||+|++|...++.+...|++
T Consensus       222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~  252 (486)
T 2fr1_A          222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAP  252 (486)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCS
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence            4678999999999999999988888778885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	6e-27
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	2e-25
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	2e-23
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	7e-23
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	3e-21
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	2e-20
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	2e-20
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	5e-19
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	9e-19
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	3e-18
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	2e-17
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	1e-16
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	9e-16
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	1e-15
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	2e-15
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	8e-15
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	2e-13
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	3e-13
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	4e-12
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	5e-12
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	3e-11
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	2e-10
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	1e-09
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	2e-08
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	7e-08
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	1e-06
d1iz0a2	171	c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus	2e-06
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	2e-06
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	3e-06
d1rjwa2	168	c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu	6e-06
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	1e-05
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	1e-05
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	2e-05
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	5e-05
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	5e-05
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	7e-05
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	1e-04
d1xa0a2	176	c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Ba	6e-04
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	7e-04
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	0.001
d1o8ca2	77	c.2.1.1 (A:116-192) Hypothetical protein YhdH {Esc	0.003
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	0.003
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	0.003

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score =  100 bits (250), Expect = 6e-27
 Identities = 44/180 (24%), Positives = 68/180 (37%), Gaps = 24/180 (13%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           T+P  MKA +   YG    +   E+V VP     QVL+K+ A+ +   D    +G +   
Sbjct: 1   TLPQTMKAAVVHAYGAPLRI---EEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVK 57

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGS----------- 187
               P +PG++  G V  VG+ V   KEGD V       A    +   +           
Sbjct: 58  PPL-PFIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN 116

Query: 188 --------LAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
                    AEY   +   +   PKN+      G    I    + + R G   G+ +L +
Sbjct: 117 TGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQM-RAGQIEGRIVLEM 175

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 96.1 bits (238), Expect = 2e-25
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 8/158 (5%)

Query: 82  SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP 141
           S  +A++  +            +++  + E  VL++V  +++N  DG             
Sbjct: 2   SAFQAFVVNKTETEFTAGVQT-ISMDDLPEGDVLVRVHYSSVNYKDGLASIPDG---KIV 57

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAP 201
                   +    V V +Q   F+EGDEV     E  +     FG  +EY  +    L P
Sbjct: 58  KTYPFVPGIDLAGVVVSSQHPRFREGDEVIATGYEIGV---THFGGYSEYARLHGEWLVP 114

Query: 202 KPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
            PK L+   A  + LA           G   G++++ L
Sbjct: 115 LPKGLER-IAQEISLAELPQALKRILRGELRGRTVVRL 151

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 91.6 bits (226), Expect = 2e-23
 Identities = 39/178 (21%), Positives = 63/178 (35%), Gaps = 25/178 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGK-RRQGKFKATDSPL 142
           + A LY      + L+ ++   +P+ KED+VL+++    +   D      G+        
Sbjct: 3   LSAVLYK----QNDLRLEQ-RPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKD 57

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQF----------------- 185
           P V G++ +G VVKVG  VK  K+GD V  +                             
Sbjct: 58  PMVIGHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPP 117

Query: 186 --GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNG 241
             G+LA Y           P N +  Q       +E   +  E     A  +I V+  
Sbjct: 118 DDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMIS 175

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 89.5 bits (221), Expect = 7e-23
 Identities = 33/169 (19%), Positives = 56/169 (33%), Gaps = 10/169 (5%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            +A    +      +     ++   + +D VLIKV  + +N  DG   +           
Sbjct: 4   FQALQAEKNADDVSVHVKT-ISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPL 62

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
            +       VV     +  E  E      ++         + G L+EY +V    L P P
Sbjct: 63  ILGIDAAGTVVSSNDPRFAEGDEVIATSYELG------VSRDGGLSEYASVPGDWLVPLP 116

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQV 252
           +NL   +A    L      E        A K IL     G V   ++++
Sbjct: 117 QNLSLKEAMVDQLLTIVDREVSLEETPGALKDILQNRIQGRV---IVKL 162

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (209), Expect = 3e-21
 Identities = 52/169 (30%), Positives = 74/169 (43%), Gaps = 21/169 (12%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           M+A    E+GG +VLK    + VP  K+ QVLIKV A  +NPV+   R G +      LP
Sbjct: 3   MRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYS-RKPLLP 61

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
             PG DVAGV+  VG     FK+GD V+              G  AEY    +  +   P
Sbjct: 62  YTPGSDVAGVIEAVGDNASAFKKGDRVFTSST--------ISGGYAEYALAADHTVYKLP 113

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQV 252
           + L  V  +  PL                     +++GSG  G +++ +
Sbjct: 114 EKLKPVIGSQYPLEKVAEAHE------------NIIHGSGATGKMILLL 150

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 83.9 bits (206), Expect = 2e-20
 Identities = 45/180 (25%), Positives = 72/180 (40%), Gaps = 29/180 (16%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDS--- 140
           M+A    E G    L   +++ VP+ K  QVLIKV AA +   D   RQG+F        
Sbjct: 1   MRAVRLVEIGKPLSL---QEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVED 57

Query: 141 ---PLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALE----------------- 180
               LP   G+++AG + +VG +V  + +GD V  +  +                     
Sbjct: 58  LGVKLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW 117

Query: 181 -GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL-AIETAYEGLERTGFSAGKSILV 238
            G    G+ AEY  V       K + +  +    + L     A + LE    + G+ +L+
Sbjct: 118 LGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNLENFK-AIGRQVLI 176

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (206), Expect = 2e-20
 Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 27/184 (14%)

Query: 81  PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGK-RRQGKFKATD 139
           P+ +   ++G       L+ +    +P+   ++VL+++ +  +   D      G+     
Sbjct: 6   PNNLSLVVHG----PGDLRLEN-YPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFI 60

Query: 140 SPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYG-------------------DINEKALE 180
              P V G++ +G V KVG+ VK  K GD V                       +     
Sbjct: 61  VKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCA 120

Query: 181 GPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN 240
            P   G+L  +           P N+  +     PL    A E  E      G  I++  
Sbjct: 121 TPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFPLE--KALEAFETFKKGLGLKIMLKC 178

Query: 241 GSGG 244
               
Sbjct: 179 DPSD 182

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 78.8 bits (193), Expect = 5e-19
 Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 7/138 (5%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           ++A L  +  G  +      +   ++ E  V + V  ++LN  D     GK K   +  P
Sbjct: 1   LQALLLEQQDGKTLASVQT-LDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNF-P 58

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
            +PG D AG V     +   F  G EV   +      G   +G LAE   V+   L   P
Sbjct: 59  MIPGIDFAGTVRTS--EDPRFHAGQEV---LLTGWGVGENHWGGLAEQARVKGDWLVAMP 113

Query: 204 KNLDFVQAAGLPLAIETA 221
           +     + +         
Sbjct: 114 QGQAAKEISLSEAPNFAE 131

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 79.5 bits (195), Expect = 9e-19
 Identities = 34/196 (17%), Positives = 62/196 (31%), Gaps = 45/196 (22%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA +  E G    +   E++ V   K  +V IK++A A+   D     G       P+ 
Sbjct: 7   CKAAVAWEAGKPLSI---EEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVI 63

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDIN------EKALEGPKQF------------ 185
              G+  AG+V  VG  V + K GD V           +  L                  
Sbjct: 64  --LGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGL 121

Query: 186 ---------------------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224
                                 + +EYT V +  +A     +   +     L+ +   + 
Sbjct: 122 MPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKA 181

Query: 225 LERTGF-SAGKSILVL 239
            E      + ++++ +
Sbjct: 182 FELMHSGKSIRTVVKI 197

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 78.3 bits (192), Expect = 3e-18
 Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 30/187 (16%)

Query: 79  TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT 138
           + P + +      +      K  +        +  + IK+ A  +   D     G +   
Sbjct: 2   SYPEKFEGIAIQSHEDWKNPKKTK-YDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWG-- 58

Query: 139 DSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEG----------------- 181
           +  +P V G+++ G VVK+G +     +  +  G   +                      
Sbjct: 59  NMKMPLVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFV 118

Query: 182 ----------PKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFS 231
                         G  A Y  V E  + P P+N+           +  A+E +E+    
Sbjct: 119 TTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERMEKGDVR 178

Query: 232 AGKSILV 238
              +++ 
Sbjct: 179 YRFTLVG 185

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 74.1 bits (181), Expect = 2e-17
 Identities = 41/156 (26%), Positives = 59/156 (37%), Gaps = 25/156 (16%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKAW+    GG   L     +  P+ +E +V+++V A  LN  D   R G +     P P
Sbjct: 1   MKAWVLKRLGGPLEL---VDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHP-P 56

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKP 203
            +PG +V GV                    +  +        G LAE  AV +  L P P
Sbjct: 57  FIPGMEVVGV--------------------VEGRRYAALVPQGGLAERVAVPKGALLPLP 96

Query: 204 KNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
           +    V         E A+  L   G   GK ++ L
Sbjct: 97  EGRPVVGPVFPFAEAEAAFRALLDRG-HTGKVVVRL 131

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 73.8 bits (180), Expect = 1e-16
 Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 52/211 (24%)

Query: 69  STEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDG 128
           +T  +  K        KA +  E     V+   E++ V     +++ IK++A  +   D 
Sbjct: 1   ATVGKVIK-------CKAAVAWEANKPLVI---EEIEVDVPHANEIRIKIIATGVCHTDL 50

Query: 129 KRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYG---------------- 172
                       P   V G++ AG+V  VG  V EF+ G++V                  
Sbjct: 51  YHLFEGKHKDGFP--VVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPK 108

Query: 173 -----------------------DINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFV 209
                                      + +       + ++YT V +  +A    ++   
Sbjct: 109 TNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLD 168

Query: 210 QAAGLPLAIETAYEGLERTG-FSAGKSILVL 239
           +     + +E+  + ++        +++L L
Sbjct: 169 EFITHRMPLESVNDAIDLMKHGKCIRTVLSL 199

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 71.0 bits (172), Expect = 9e-16
 Identities = 24/173 (13%), Positives = 54/173 (31%), Gaps = 7/173 (4%)

Query: 84  MKAWLYGEYGG-VDVLKF-DEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSP 141
            +A LY ++G   DVL     ++    +  ++V++K + + +NP D  + QG + +  + 
Sbjct: 4   AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 63

Query: 142 LPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAP 201
                  + A      G         +    +  +  +     FG+   +    +     
Sbjct: 64  TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 123

Query: 202 KPKNLDFVQAAGLPLAIETAYEGL--ERTGFSAGKSILVLN-GSGGVGSLVIQ 251
            P        A       T  + +     G      +      +   G  +I 
Sbjct: 124 LPNP--AQSKANGKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT 174

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 70.4 bits (171), Expect = 1e-15
 Identities = 36/175 (20%), Positives = 60/175 (34%), Gaps = 26/175 (14%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MKA +  ++   + LK  E V  P +   +VL+++ A  +   D              LP
Sbjct: 1   MKAAVVEQFK--EPLKIKE-VEKPTISYGEVLVRIKACGVCHTDLHAAH-GDWPVKPKLP 56

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV-------------------YGDINEKALEGPKQ 184
            +PG++  G+V +VG  V   K GD V                         +   G   
Sbjct: 57  LIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSV 116

Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL 239
            G  AEY       +   P N          +     ++ + + G   G+ +L L
Sbjct: 117 DGGYAEYCRAAADYVVKIPDNTIIEVQPLEKIN--EVFDRMLK-GQINGRVVLTL 168

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 71.1 bits (173), Expect = 2e-15
 Identities = 43/199 (21%), Positives = 66/199 (33%), Gaps = 51/199 (25%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA +  + G    +   E++ V   K  +V I+V+A  + P D      K KA     P
Sbjct: 9   CKAAIAWKTGSPLCI---EEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKALF---P 62

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYG------------------------------- 172
            V G++ AG+V  VG  V  FK GD+V                                 
Sbjct: 63  VVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTI 122

Query: 173 ------------DINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIET 220
                           +++       S ++YT V E  LA      D        L  E+
Sbjct: 123 DQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPFES 182

Query: 221 AYEGLERTGFSAGKSILVL 239
             + ++      GKSI  +
Sbjct: 183 INDAIDL--MKEGKSIRTI 199

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 67.7 bits (164), Expect = 8e-15
 Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 13/152 (8%)

Query: 89  YGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGY 148
           + ++GG +VL+  E  T     E+++ ++  A  +N +D   R G +     P       
Sbjct: 6   FHKHGGPEVLQAVE-FTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEA 64

Query: 149 DVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNL-- 206
                 V  G +  +  +                   G+ +    +     A  P  +  
Sbjct: 65  AGIVSKVGSGVKHIKAGDRVVYAQS----------ALGAYSSVHNIIADKAAILPAAIKV 114

Query: 207 DFVQAAGLPLAIETAYEGLERTGFSAGKSILV 238
           D  +    PL        +  +  + G S+L+
Sbjct: 115 DVAEQQKYPLKDAQRAHEILESRATQGSSLLI 146

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 26/187 (13%), Positives = 58/187 (31%), Gaps = 42/187 (22%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
             A +  ++    V    ++  +  +    +L+++++A +   D    +G+      P+ 
Sbjct: 5   AHAMVLEKFNQPLVY---KEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPII 61

Query: 144 -----TVPGYDVAGVVVKVGTQVKEF------------------KEGDE--------VYG 172
                     +V G    +  ++ +                   K   E        VYG
Sbjct: 62  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYG 121

Query: 173 DINEKALEGPKQFGSLAEYTAV-EERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFS 231
            IN    E P   G  + +  +  E  +    + +       LPL    A + LE     
Sbjct: 122 -INRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKITHR----LPLK--EANKALELMESR 174

Query: 232 AGKSILV 238
               +++
Sbjct: 175 EALKVIL 181

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 64.5 bits (156), Expect = 3e-13
 Identities = 30/200 (15%), Positives = 54/200 (27%), Gaps = 35/200 (17%)

Query: 84  MKAWLYGEYGGVDVLKFDE---KVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA--- 137
            +  +Y   G V+V K D    +    +  E  V++KVV+  +   D    +G+  A   
Sbjct: 2   NRGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQVG 61

Query: 138 --------------TDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDE--------VYGDIN 175
                                  G  V+        + +  KE                 
Sbjct: 62  LVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGA 121

Query: 176 EKALEGPKQFGSLAEYTAV--EERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAG 233
              ++     G  AEY  V   +  L   P     ++   +   +      L+      G
Sbjct: 122 YGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQVISLDDAPRGYG 181

Query: 234 KSILVLNGSGGVGSLVIQVC 253
           +       +G     VI   
Sbjct: 182 EF-----DAGVPKKFVIDPH 196

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 60.8 bits (146), Expect = 4e-12
 Identities = 31/174 (17%), Positives = 55/174 (31%), Gaps = 24/174 (13%)

Query: 85  KAWLYGEYGGVDVLKFDEKVTVPQVK-EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           KA    EY     +   E V  P+++    V++++  A +   D    QG +     P  
Sbjct: 1   KAARLHEYNKPLRI---EDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKL 57

Query: 144 TVPGYDVAGVVVKVGT-QVKEFKEGDEV------------------YGDINEKALEGPKQ 184
                      ++     V+  ++GD V                            G   
Sbjct: 58  PYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNI 117

Query: 185 FGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILV 238
            G  AE+     R +   PK++           I    E LE+ G   G+++L+
Sbjct: 118 DGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLEK-GEVLGRAVLI 170

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 61.0 bits (147), Expect = 5e-12
 Identities = 41/210 (19%), Positives = 65/210 (30%), Gaps = 54/210 (25%)

Query: 69  STEAEPTKVGTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDG 128
           ST  +  K        KA +  E      +   E+V V   K  +V IK+VA  +   D 
Sbjct: 1   STAGKVIK-------CKAAVLWEEKKPFSI---EEVEVAPPKAHEVRIKMVATGICRSDD 50

Query: 129 KRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQF--- 185
               G       PLP + G++ AG+V  +G  V   + GD+V      +  +        
Sbjct: 51  HVVSGTLVT---PLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPE 107

Query: 186 ------------------------------------GSLAEYTAVEERLLAPKPKNLDFV 209
                                                + ++YT V+E  +A         
Sbjct: 108 GNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFALD 167

Query: 210 QAAGLPLAIETAYEGLERTGFSAGKSILVL 239
                 L  E   EG       +G+SI  +
Sbjct: 168 PLITHVLPFEKINEGF--DLLRSGESIRTI 195

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 59.1 bits (142), Expect = 3e-11
 Identities = 35/205 (17%), Positives = 62/205 (30%), Gaps = 55/205 (26%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
            KA +  E      L   E +TV   K  +V IK++A+ +   D    +    +     P
Sbjct: 9   CKAAVAWEPHKPLSL---ETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPSKF---P 62

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEV--------------------------YGDINEK 177
            + G++  GVV  +G  V   K GD+V                           G     
Sbjct: 63  VILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGL 122

Query: 178 ALEGPKQF-------------GSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG 224
             +   +F              +  EYT V +  +A     ++        L ++   + 
Sbjct: 123 MADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFLVSTKLTLDQINK- 181

Query: 225 LERTGFSAGKSILVLNGSGGVGSLV 249
                      +L   G G    ++
Sbjct: 182 --------AFELLSS-GQGVRSIMI 197

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 31/192 (16%), Positives = 58/192 (30%), Gaps = 40/192 (20%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           MK +       +       +   P       +++ +A +              A      
Sbjct: 1   MKGFAMLGINKLGW----IEKERPVAGSYDAIVRPLAVSPCT--SDIHTVFEGALGDRKN 54

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVYGDINEKALE---------------------GP 182
            + G++  G VV+VG++VK+FK GD V                                 
Sbjct: 55  MILGHEAVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSN 114

Query: 183 KQFGSLAEYTAV--EERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN 240
            + G   EY  V   +  LA  PK++D  +           Y G +       +++L++ 
Sbjct: 115 FKDGVFGEYFHVNDADMNLAILPKDVDLSKLV------THVYHGFDH----IEEALLLM- 163

Query: 241 GSGGVGSLVIQV 252
                  +   V
Sbjct: 164 KDKPKDLIKAVV 175

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 54.6 bits (130), Expect = 1e-09
 Identities = 34/211 (16%), Positives = 55/211 (26%), Gaps = 71/211 (33%)

Query: 83  EMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPL 142
           ++ A +    G    L   + + + Q + D+VL+KVVA  +   D   R  K+     PL
Sbjct: 3   DIIAAVTPCKGADFEL---QALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKY---PVPL 56

Query: 143 PTVPGYDVAGVVVKVGTQVKEFKEGDEV-------------------------------- 170
           P V G++ +G++  +G  V E + GD V                                
Sbjct: 57  PAVLGHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGA 116

Query: 171 --------YGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAY 222
                            +      S A Y    E       K+  F Q            
Sbjct: 117 DSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLV---------- 166

Query: 223 EGLERTGFSAGKSILVLNGSGGVGSLVIQVC 253
                                 +    I   
Sbjct: 167 ---------------KFYAFDEINQAAIDSR 182

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 50.5 bits (119), Expect = 2e-08
 Identities = 14/56 (25%), Positives = 27/56 (48%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261
           L+ V+AA L  +  T Y  + +      K++LV+   GG+G++ +Q+         
Sbjct: 1   LNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATI 56

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 48.8 bits (115), Expect = 7e-08
 Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 33/169 (19%)

Query: 84  MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLP 143
           +KA   G Y     L+  + +T  +   + V I++    +   D  + + ++    +  P
Sbjct: 1   IKA--VGAYSAKQPLEPMD-ITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWA--GTVYP 55

Query: 144 TVPGYDVAGVVVKVGTQVKEFKEGDEVY----------------GDIN-----------E 176
            VPG+++ G VV VG QV+++  GD V                 G  N            
Sbjct: 56  CVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSP 115

Query: 177 KALEGPKQFGSLAEYTAVEERLLAPKP-KNLDFVQAAGLPLAIETAYEG 224
              E     G  ++   V ER +      +++ ++A  +  A E    G
Sbjct: 116 TPDEPGHTLGGYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRG 164

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.1 bits (105), Expect = 1e-06
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYY 256
           ++F + A +  A  T Y+GL++T    G+ + +    GG+G + +Q     
Sbjct: 1   VEFAEIAPILCAGVTVYKGLKQTNARPGQWVAISG-IGGLGHVAVQYARAM 50

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILV 238
           L   +AA  P++  TAY  L+R     G+ +LV
Sbjct: 1   LSPEEAAAFPVSFLTAYLALKRAQARPGEKVLV 33

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVG-SLVIQVCYYY 256
           L   Q A + +   TAY  L      + GK   + NG          Q+    
Sbjct: 1   LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLL 53

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYY 256
           +    A  +   + T + G E      G S++V+ G G VG + I      
Sbjct: 1   MPLENAVMITDMMTTGFHGAELADIEMGSSVVVI-GIGAVGLMGIAGAKLR 50

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 43.2 bits (100), Expect = 6e-06
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILV 238
           L F +AA +  A  T Y+ L+ TG   G+ + +
Sbjct: 1   LSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAI 33

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 1/46 (2%)

Query: 211 AAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYY 256
              L   + T Y G    G   G ++ V  G+G VG          
Sbjct: 4   LTCLSDILPTGYHGAVTAGVGPGSTVYVA-GAGPVGLAAAASARLL 48

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 210 QAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261
            AA L     T Y  L R G   GK + ++ G GG+GS+   +        +
Sbjct: 5   LAAPLLCGGLTVYSPLVRNGCGPGKKVGIV-GLGGIGSMGTLISKAMGAETY 55

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 205 NLDFVQAAGLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYY 256
               V+ A L  A  TAY  +++   +    + + + G GG+G + +Q+    
Sbjct: 3   REKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVM 55

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 5e-05
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTG-FSAGKSILV 238
           LDF Q A + +   TAY  L  +    AG+S+LV
Sbjct: 1   LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLV 34

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.7 bits (94), Expect = 5e-05
 Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 207 DFVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261
           D    A    +  TAY   +      AGK++++  G+G +G   + +         
Sbjct: 2   DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQ-GAGPLGLFGVVIARSLGAENV 56

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.4 bits (93), Expect = 7e-05
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 210 QAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261
           +AA   +A  TA+  L   G  S G+ +L+ + +GGVG   + +        +
Sbjct: 2   EAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIY 54

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 39.2 bits (90), Expect = 1e-04
 Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261
                 A L  A  T Y  L       GK + V+ G GG+G + I++ +       
Sbjct: 4   EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVV-GIGGLGHMGIKLAHAMGAHVV 58

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.5 bits (86), Expect = 6e-04
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 206 LDFVQAAGLPLAIETAY---EGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYY 256
           L   +A  +  A  TA      LE  G +     +LV   +GGVGSL + +    
Sbjct: 1   LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKR 55

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 1/35 (2%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVL 239
           + F QAA   L   T Y  L +T      +  L  
Sbjct: 1   ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFH 35

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 205 NLDFVQAAGLPLAIETAYEGLERTG-FSAGK--SILVLNGSGGVGSLVIQVCYYY 256
           +L +   A + +   T+  G++  G  SAG   +++V   +G  GSL  Q+ +  
Sbjct: 1   HLSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLL 54

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 77

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 206 LDFVQAAGLPLAIETAYEGLERTGFS----AGKSILVLNGSGGVGSLVIQVCY 254
           LD  +A  +  A  TA   +     +        I+V   SGGVGS  + + +
Sbjct: 1   LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLH 53

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 35.4 bits (80), Expect = 0.003
 Identities = 6/49 (12%), Positives = 14/49 (28%), Gaps = 1/49 (2%)

Query: 208 FVQAAGLPLAIETAYEGLERTG-FSAGKSILVLNGSGGVGSLVIQVCYY 255
             +   +     T Y    +    + G +  V    G   S+++     
Sbjct: 3   LEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAA 51

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 208 FVQAAGL-PLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF 261
             + A L PL+         R G   G ++LV+ G+G +G + +     Y  F  
Sbjct: 3   LEEGALLEPLS--VGVHACRRAGVQLGTTVLVI-GAGPIGLVSVLAAKAYGAFVV 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.97
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.97
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.97
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.96
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.96
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.96
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.96
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.96
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.95
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.95
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.95
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.95
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.95
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.95
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.94
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.94
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.93
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.93
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.93
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.93
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.92
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.92
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.91
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.74
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.72
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.19
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.05
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.03
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	98.94
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	98.94
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	98.93
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	98.83
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	98.58
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	98.15
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	98.04
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.94
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.28
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	92.8
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	87.42
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	86.83
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	85.38
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	83.71
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	83.25
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	82.71
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	81.93
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	81.72
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	81.21

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.97  E-value=1.8e-31  Score=218.38  Aligned_cols=156  Identities=29%  Similarity=0.423  Sum_probs=134.2

Q ss_pred             CcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775           79 TVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        79 ~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      +||++|||++++++|++  |+++ ++++|.+++|||||||.+++||++|++.++|.++. ...+|.++|||++|+|+++|
T Consensus         1 ~~P~tMkA~v~~~~g~p--l~l~-evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~-~~~~P~i~GhE~~G~V~~~G   76 (175)
T d1llua1           1 TLPQTMKAAVVHAYGAP--LRIE-EVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPV-KPPLPFIPGHEGVGYVAAVG   76 (175)
T ss_dssp             CCCSEEEEEEBCSTTSC--CEEE-EEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSS-CCCSSBCCCSCEEEEEEEEC
T ss_pred             CcchhcEEEEEEeCCCC--CEEE-EeECCCCCCCEEEEEEEEecCcccchhhhccCccc-cccCCcCCCCcceEEEEEeC
Confidence            47999999999999876  6677 99999999999999999999999999999997753 25678999999999999999


Q ss_pred             CCCCCCCCCCEEEEecC-------------------ccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHH
Q 024775          159 TQVKEFKEGDEVYGDIN-------------------EKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE  219 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~-------------------~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~  219 (262)
                      ++++.|++||+|+....                   .....+...+|+|+||++++++.++++|++++++.++++...+.
T Consensus        77 ~~v~~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~~  156 (175)
T d1llua1          77 SGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDIN  156 (175)
T ss_dssp             TTCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTCCCCEEEECGGGHH
T ss_pred             CCccccccCCEEEeccccccCCccccccCCcccccccccccccccccccceEEEechHHEEECCCCCChhHHHHHHhHHH
Confidence            99999999999986431                   11123345678999999999999999999999988888888999


Q ss_pred             HHHHHHHHcCCCCCCEEEEE
Q 024775          220 TAYEGLERTGFSAGKSILVL  239 (262)
Q Consensus       220 tA~~al~~~~~~~g~~VlI~  239 (262)
                      |+++.++...+ +|++|||+
T Consensus       157 t~~~~~~~g~~-~G~~VLVl  175 (175)
T d1llua1         157 QILDQMRAGQI-EGRIVLEM  175 (175)
T ss_dssp             HHHHHHHTTCC-SSEEEEEC
T ss_pred             HHHHHHHhCCC-CCCEEEeC
Confidence            99988765544 69999984

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-31  Score=212.50  Aligned_cols=149  Identities=36%  Similarity=0.511  Sum_probs=135.3

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      +.|||++++++|.+++|+++++.+.|++++|||||||.+++||++|++.++|..+.. ..+|.++|||++|+|+++|+++
T Consensus         1 ~~MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~-~~~p~i~G~e~~G~V~~vG~~v   79 (150)
T d1yb5a1           1 KLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRK-PLLPYTPGSDVAGVIEAVGDNA   79 (150)
T ss_dssp             CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCC-CCSSBCCCSCEEEEEEEECTTC
T ss_pred             CceeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCcc-ccccccCccceeeeeEeeccee
Confidence            359999999999999899876789999999999999999999999999999876543 5678999999999999999999


Q ss_pred             CCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEE
Q 024775          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVL  239 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~  239 (262)
                      ++|++||+|++...        ..|+|+||++++++.++++|+++++++|+++++...|+|+++. ....+.|+++||+
T Consensus        80 ~~~~vGdrV~~~~~--------~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1          80 SAFKKGDRVFTSST--------ISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             TTCCTTCEEEESCC--------SSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             eccccCcccccccc--------ccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            99999999998653        4699999999999999999999999999999999999999885 5788999999984

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.97  E-value=1.2e-31  Score=220.03  Aligned_cols=154  Identities=24%  Similarity=0.303  Sum_probs=131.2

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCC-CCCCCCCCCCCCccEEEEEEEeCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF-KATDSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~-~~~~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      |+|+ +.++++   |+++ ++++|++++||||||+++++||++|++.+++.. +....++|.++|||++|+|+++|++++
T Consensus         3 maAV-l~g~~~---l~~~-e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~   77 (178)
T d1e3ja1           3 LSAV-LYKQND---LRLE-QRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVK   77 (178)
T ss_dssp             EEEE-EEETTE---EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCC
T ss_pred             eEEE-EEcCCc---EEEE-EeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccC
Confidence            5555 555554   7888 999999999999999999999999999887643 333456789999999999999999999


Q ss_pred             CCCCCCEEEEecCccc-------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHH
Q 024775          163 EFKEGDEVYGDINEKA-------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYE  223 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~~-------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~  223 (262)
                      +|++||+|+......+                   ..+...+|+|+||++++++.++++|+++++++++.+++.+.|+|+
T Consensus        78 ~~~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~  157 (178)
T d1e3ja1          78 HLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVD  157 (178)
T ss_dssp             SCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGHHH
T ss_pred             CCCCCCEEEECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeCCCCCCHHHHHHHHhHHHHHHH
Confidence            9999999987543111                   122345799999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCCCEEEEEcCc
Q 024775          224 GLERTGFSAGKSILVLNGS  242 (262)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~  242 (262)
                      +++++++++|++|+|+||+
T Consensus       158 a~~~~~~~~g~~VlVig~C  176 (178)
T d1e3ja1         158 AFEAARKKADNTIKVMISC  176 (178)
T ss_dssp             HHHHHHHCCTTCSEEEEEC
T ss_pred             HHHHhCCCCCCEEEEEccc
Confidence            9999999999999999976

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-30  Score=216.06  Aligned_cols=160  Identities=19%  Similarity=0.230  Sum_probs=134.8

Q ss_pred             CCcccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEe
Q 024775           78 GTVPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKV  157 (262)
Q Consensus        78 ~~~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~v  157 (262)
                      |+.|.+||+|++..+++...+++. +.+.++++++||||||.++|||++|++.+.|..+.  .++|+++|||++|+|+++
T Consensus         1 m~~P~~~ka~~~~~~~~~~~~~~~-~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~--~~~P~i~GHE~~G~Vv~v   77 (192)
T d1piwa1           1 MSYPEKFEGIAIQSHEDWKNPKKT-KYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN--MKMPLVVGHEIVGKVVKL   77 (192)
T ss_dssp             CCTTTCEEEEEECCSSSTTSCEEE-EECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC--CCSSEECCCCEEEEEEEE
T ss_pred             CCCCceeEEEEEeCCCcCCcceEe-eccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCC--CCCCcCcccccccchhhc
Confidence            468999999999999988777777 66777789999999999999999999999987664  567899999999999999


Q ss_pred             CCCC-CCCCCCCEEEEecCc--------------------------cccCCCCCCCceeeEEEecCCCeEECCCCCCHhh
Q 024775          158 GTQV-KEFKEGDEVYGDINE--------------------------KALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQ  210 (262)
Q Consensus       158 G~~v-~~~~~Gd~V~~~~~~--------------------------~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~  210 (262)
                      |+++ +.+++||+|......                          ....+...+|+|+||++++++.++++|+++++++
T Consensus        78 G~~v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~iP~~l~~e~  157 (192)
T d1piwa1          78 GPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVET  157 (192)
T ss_dssp             CTTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTCCEEE
T ss_pred             ccccccccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccccccccceeeEEEeehHHeEECCCCCCHHH
Confidence            9987 679999999643210                          0112344579999999999999999999999987


Q ss_pred             HhcccchHHHHHHHHHHcCCCCCCEEEEEc
Q 024775          211 AAGLPLAIETAYEGLERTGFSAGKSILVLN  240 (262)
Q Consensus       211 aa~l~~~~~tA~~al~~~~~~~g~~VlI~G  240 (262)
                      |+.+...+.|||++++++++++|++|||..
T Consensus       158 Aal~~~~~~ta~~~l~~~~vk~g~~Vvv~~  187 (192)
T d1piwa1         158 LPVGEAGVHEAFERMEKGDVRYRFTLVGYD  187 (192)
T ss_dssp             EESSHHHHHHHHHHHHHTCCSSEEEEECCH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCEEEEEC
Confidence            765555578999999999999999999863

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.7e-29  Score=199.84  Aligned_cols=143  Identities=24%  Similarity=0.340  Sum_probs=127.4

Q ss_pred             eEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCCC
Q 024775           85 KAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKEF  164 (262)
Q Consensus        85 ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~~  164 (262)
                      +.+.|+++|.+++|+++ +.+.|+|++|||+|||.+++||++|+++++|.++.  .++|.++|||++|+|+++|+++++|
T Consensus         2 ~~i~~~~~G~pe~l~~~-e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~--~~~p~~~G~e~~G~V~~vG~~v~~~   78 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAV-EFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP--PSLPSGLGTEAAGIVSKVGSGVKHI   78 (147)
T ss_dssp             EEEEBSSCCSGGGCEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--SSSSBCCCSCEEEEEEEECTTCCSC
T ss_pred             eEEEEcccCCCceeEEE-EecCCCCCCCEEEEEEEEecccceeeeeecCCCCC--Ccceeeeccccccceeeeeeecccc
Confidence            56889999999999999 99999999999999999999999999999998764  5678999999999999999999999


Q ss_pred             CCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHh--hHhcccchHHHHHHHHHHcCCCCCCEEEE
Q 024775          165 KEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFV--QAAGLPLAIETAYEGLERTGFSAGKSILV  238 (262)
Q Consensus       165 ~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~--~aa~l~~~~~tA~~al~~~~~~~g~~VlI  238 (262)
                      ++||+|+....        ..|+|+||++++.+.++++|++++++  +++.+++...++++++.+.++++|++|||
T Consensus        79 ~vGdrV~~~~~--------~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~~~~~~G~~VLI  146 (147)
T d1qora1          79 KAGDRVVYAQS--------ALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLI  146 (147)
T ss_dssp             CTTCEEEESCC--------SSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEE
T ss_pred             cccceeeeecc--------ccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEe
Confidence            99999976442        36899999999999999999998776  44555777778888887788999999998

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.96  E-value=1.7e-29  Score=205.98  Aligned_cols=150  Identities=23%  Similarity=0.324  Sum_probs=130.9

Q ss_pred             eEEEEcccCCcceEEEEeeecCCCC-CCCeEEEEEEEEecChhhHHhHcCCCCCC-CCCCCCCCCccEEEEEEEeCCCCC
Q 024775           85 KAWLYGEYGGVDVLKFDEKVTVPQV-KEDQVLIKVVAAALNPVDGKRRQGKFKAT-DSPLPTVPGYDVAGVVVKVGTQVK  162 (262)
Q Consensus        85 ka~v~~~~g~~~~l~~~~~~~~p~~-~~~eVlVkV~a~~i~~sD~~~~~g~~~~~-~~~~p~~~G~e~vG~Vv~vG~~v~  162 (262)
                      ||++++++|++  |+++ ++++|++ .+|||||||.+++||++|++.++|..+.. ..++|+++|||++|+|+++|++++
T Consensus         1 kA~~~~~~g~p--l~i~-~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~   77 (171)
T d1h2ba1           1 KAARLHEYNKP--LRIE-DVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVE   77 (171)
T ss_dssp             CEEEESSTTSC--CEEE-CCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CEEEEEeCCCC--CEEE-EeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCC
Confidence            79999999987  7777 9999986 58999999999999999999999876432 246789999999999999999999


Q ss_pred             CCCCCCEEEEecCcc------------------ccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          163 EFKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       163 ~~~~Gd~V~~~~~~~------------------~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      +|++||+|+......                  ...+...+|+|+||++++++.++++|++++++.++++...+.|+|++
T Consensus        78 ~~~~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~ta~~a  157 (171)
T d1h2ba1          78 GLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLER  157 (171)
T ss_dssp             SCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHHHHHH
T ss_pred             cCCCCCEEEEcCccCCCCcccccccccccccccccceeecccccceeeeehhhcceecCCCCCHHHHHHHHhHHHHHHHH
Confidence            999999999865322                  12334567999999999999999999999998888888999999999


Q ss_pred             HHHcCCCCCCEEEE
Q 024775          225 LERTGFSAGKSILV  238 (262)
Q Consensus       225 l~~~~~~~g~~VlI  238 (262)
                      +++..+ .|++|||
T Consensus       158 l~~~~~-~G~~VlI  170 (171)
T d1h2ba1         158 LEKGEV-LGRAVLI  170 (171)
T ss_dssp             HHTTCC-SSEEEEE
T ss_pred             HHhcCC-CCCEEEe
Confidence            988888 8999998

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=7.1e-29  Score=201.83  Aligned_cols=150  Identities=25%  Similarity=0.363  Sum_probs=124.6

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||+++++++++  |+++ +++.|+|++|||||||++++||++|++.+++.... ...+|.++|||++|+|+++|++++.
T Consensus         1 MkA~v~~~~g~p--l~i~-~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~-~~~~p~v~GhE~~G~Vv~vG~~v~~   76 (171)
T d1rjwa1           1 MKAAVVEQFKEP--LKIK-EVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPV-KPKLPLIPGHEGVGIVEEVGPGVTH   76 (171)
T ss_dssp             CEEEEBSSTTSC--CEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSS-CCCSSBCCCSCEEEEEEEECTTCCS
T ss_pred             CeEEEEecCCCC--cEEE-EeECCCCCCCeEEEEEEEeeccccceeeeeccccc-ccccccccCCEEEEEEEEecccccC
Confidence            899999999876  7777 89999999999999999999999999988865433 2567899999999999999999999


Q ss_pred             CCCCCEEEEecCcc-------------------ccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          164 FKEGDEVYGDINEK-------------------ALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~-------------------~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      +++||+|+..+...                   ...+...+|+|+||+++++++++++|++++++.|+ + ..+.++++.
T Consensus        77 ~~vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~A~-l-~~~~~~~~~  154 (171)
T d1rjwa1          77 LKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQP-L-EKINEVFDR  154 (171)
T ss_dssp             CCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTCCEEEEE-G-GGHHHHHHH
T ss_pred             ceeeeEEeeccccccccccccccCCCccccccccccceeccCccccceEecHHHEEECCCCCCHHHHH-H-HHHHHHHHH
Confidence            99999997643211                   12344557999999999999999999999986554 3 345577877


Q ss_pred             HHHcCCCCCCEEEEEc
Q 024775          225 LERTGFSAGKSILVLN  240 (262)
Q Consensus       225 l~~~~~~~g~~VlI~G  240 (262)
                      +.+..+ +|++|||+|
T Consensus       155 ~~~~~~-~G~tVlViG  169 (171)
T d1rjwa1         155 MLKGQI-NGRVVLTLE  169 (171)
T ss_dssp             HHTTCC-SSEEEEECC
T ss_pred             HHhcCC-CCCEEEEeC
Confidence            776666 499999998

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.96  E-value=9.1e-29  Score=206.33  Aligned_cols=154  Identities=19%  Similarity=0.213  Sum_probs=132.2

Q ss_pred             ccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (262)
Q Consensus        81 p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~  160 (262)
                      +.++||+++++.+.+  |+++ ++++|+|++|||||||.++|||++|++.+.|....  ..+|.++|||++|+|+++|++
T Consensus         6 ~~~~kAav~~~~~~p--l~i~-ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~--~~~p~i~GhE~~G~v~~vG~~   80 (199)
T d1cdoa1           6 VIKCKAAVAWEANKP--LVIE-EIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK--DGFPVVLGHEGAGIVESVGPG   80 (199)
T ss_dssp             CEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT--TSCSEECCCCEEEEEEEECTT
T ss_pred             ceEEEEEEEecCCCC--cEEE-EEECCCCCCCEEEEEEEEEEEecchhhhhhhcccc--cccccccccccceEEEEEcCC
Confidence            456779999999876  6777 99999999999999999999999999999986543  567899999999999999999


Q ss_pred             CCCCCCCCEEEEecCccccC------C---------------------------------CCCCCceeeEEEecCCCeEE
Q 024775          161 VKEFKEGDEVYGDINEKALE------G---------------------------------PKQFGSLAEYTAVEERLLAP  201 (262)
Q Consensus       161 v~~~~~Gd~V~~~~~~~~~~------~---------------------------------~~~~G~~ae~~~v~~~~~~~  201 (262)
                      ++.|++||+|+......|..      +                                 ....|+|+||++++++.+++
T Consensus        81 v~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~  160 (199)
T d1cdoa1          81 VTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAK  160 (199)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEE
T ss_pred             CceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEE
Confidence            99999999998864321100      0                                 00148999999999999999


Q ss_pred             CCCCCCHhhHhcccchHHHHHHHHHH-cCCCCCCEEEEE
Q 024775          202 KPKNLDFVQAAGLPLAIETAYEGLER-TGFSAGKSILVL  239 (262)
Q Consensus       202 lP~~~~~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlI~  239 (262)
                      +|+++++++++.+.+++.|+++++.. .+.+.|++|||+
T Consensus       161 iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         161 IDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             CCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            99999999999999999999999976 678999999984

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.96  E-value=1.3e-28  Score=205.66  Aligned_cols=153  Identities=27%  Similarity=0.320  Sum_probs=129.6

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      -|.+|||+++++++++  |+++ ++++|+|+++||||||.++|||++|++.++|..+   ..+|.++|||++|+|+++|+
T Consensus         5 ~~~~~KAaV~~~~g~p--l~i~-evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~---~~~P~v~GHE~~G~V~~vG~   78 (202)
T d1e3ia1           5 KVIKCKAAIAWKTGSP--LCIE-EIEVSPPKACEVRIQVIATCVCPTDINATDPKKK---ALFPVVLGHECAGIVESVGP   78 (202)
T ss_dssp             SCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSC---CCSSBCCCCEEEEEEEEECT
T ss_pred             CeEEEEEEEEccCCCC--CEEE-EEECCCCCCCEEEEEEEEEEEeccccceeeeecc---cccccccccccceEEeeecC
Confidence            4668999999999876  6777 9999999999999999999999999999998765   56789999999999999999


Q ss_pred             CCCCCCCCCEEEEecCcccc-------------------------------------------CCCCCCCceeeEEEecC
Q 024775          160 QVKEFKEGDEVYGDINEKAL-------------------------------------------EGPKQFGSLAEYTAVEE  196 (262)
Q Consensus       160 ~v~~~~~Gd~V~~~~~~~~~-------------------------------------------~~~~~~G~~ae~~~v~~  196 (262)
                      +|+++++||+|++.....|.                                           .+....|+|+||+++++
T Consensus        79 ~V~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~  158 (202)
T d1e3ia1          79 GVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSE  158 (202)
T ss_dssp             TCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEG
T ss_pred             CceeccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEeh
Confidence            99999999999876432110                                           00112489999999999


Q ss_pred             CCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEc
Q 024775          197 RLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN  240 (262)
Q Consensus       197 ~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~G  240 (262)
                      ..++++|++++++.++.+.+++.+.+++++.  +++|++|.|+.
T Consensus       159 ~~l~~lP~~~~~~~~~~~~~~~~~~~~a~~~--~k~G~~V~vi~  200 (202)
T d1e3ia1         159 ANLARVDDEFDLDLLVTHALPFESINDAIDL--MKEGKSIRTIL  200 (202)
T ss_dssp             GGEEECCTTSCGGGGEEEEEEGGGHHHHHHH--HHTTCCSEEEE
T ss_pred             hhEEECCCCCCHHHHHHHHHHHHHHHHHHHh--CCCCCEEEEEE
Confidence            9999999999999888888888888888865  46899987764

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.5e-28  Score=201.40  Aligned_cols=152  Identities=22%  Similarity=0.291  Sum_probs=126.6

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCC-CCCCCCCCCCCCccEEEEEEEeC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKF-KATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~-~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      .| .|+|++++++++   |+++ ++++|+|++|||||||.+++||++|++.+++.. .....++|.++|||++|+|+++|
T Consensus         5 ~p-~~~a~V~~gp~~---l~l~-evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG   79 (185)
T d1pl8a1           5 KP-NNLSLVVHGPGD---LRLE-NYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVG   79 (185)
T ss_dssp             CC-CCEEEEEEETTE---EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEEC
T ss_pred             CC-CCEEEEEeCCCe---EEEE-EeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEec
Confidence            45 478999998875   7887 999999999999999999999999999987532 22235678999999999999999


Q ss_pred             CCCCCCCCCCEEEEecCccc-------------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHH
Q 024775          159 TQVKEFKEGDEVYGDINEKA-------------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIE  219 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~-------------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~  219 (262)
                      +++++|++||+|+......|                   .+....+|+|+||+++++++++++|+++++++++.+++.  
T Consensus        80 ~~v~~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~~pl~--  157 (185)
T d1pl8a1          80 SSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFPLE--  157 (185)
T ss_dssp             TTCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEEEEGG--
T ss_pred             cceeeecccccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEEECCCCCCHHHHHHHHHH--
Confidence            99999999999987543211                   122235688999999999999999999999988776543  


Q ss_pred             HHHHHHHHcCCCCCCEEEE
Q 024775          220 TAYEGLERTGFSAGKSILV  238 (262)
Q Consensus       220 tA~~al~~~~~~~g~~VlI  238 (262)
                      +|+++++++++++|++|||
T Consensus       158 ~a~~a~~~~~~~~G~~VlI  176 (185)
T d1pl8a1         158 KALEAFETFKKGLGLKIML  176 (185)
T ss_dssp             GHHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHHhCCCCCCEEEE
Confidence            5788888889999999998

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.95  E-value=4.9e-28  Score=201.59  Aligned_cols=153  Identities=22%  Similarity=0.221  Sum_probs=131.0

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      .+|||+++++++++  |+++ ++++|+|+++||||||.++|||++|+++++|..+.  .++|.++|||++|+|+++|++|
T Consensus         5 ~~~kAav~~~~g~~--l~i~-evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~--~~~p~v~GhE~~G~V~~vG~~V   79 (197)
T d2fzwa1           5 IKCKAAVAWEAGKP--LSIE-EIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPE--GCFPVILGHLGAGIVESVGEGV   79 (197)
T ss_dssp             EEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTT--CCSSBCCCCEEEEEEEEECTTC
T ss_pred             eEEEEEEEccCCCC--CEEE-EEECCCCCCCEEEEEEEEecCCCCcHHHHcCCccc--ccccccCCcceeeEEEeecCCc
Confidence            45999999999987  7777 99999999999999999999999999999997554  5688999999999999999999


Q ss_pred             CCCCCCCEEEEecCccc---------------------------------------cCCCCCCCceeeEEEecCCCeEEC
Q 024775          162 KEFKEGDEVYGDINEKA---------------------------------------LEGPKQFGSLAEYTAVEERLLAPK  202 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~---------------------------------------~~~~~~~G~~ae~~~v~~~~~~~l  202 (262)
                      +.+++||+|+......|                                       ..+....|+|+||+++++..++++
T Consensus        80 ~~~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~v  159 (197)
T d2fzwa1          80 TKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKI  159 (197)
T ss_dssp             CSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred             eecCCCCEEEEccccccccccccccCccccCccccccccccccCCccceeccCCcceecccccccceeEEEechHHEEEC
Confidence            99999999987532110                                       011112489999999999999999


Q ss_pred             CCCCCHhhHhcccchHHHHHHHHHHcC-CCCCCEEEEE
Q 024775          203 PKNLDFVQAAGLPLAIETAYEGLERTG-FSAGKSILVL  239 (262)
Q Consensus       203 P~~~~~~~aa~l~~~~~tA~~al~~~~-~~~g~~VlI~  239 (262)
                      |+++++++++.+++++.|++.++++.+ -+.+++|||+
T Consensus       160 p~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         160 DPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             CTTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            999999999999999999999997643 4688999874

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=8.2e-28  Score=192.24  Aligned_cols=150  Identities=29%  Similarity=0.409  Sum_probs=128.2

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      ++||||+++++++...++++ ++++|+|++|||||||+++|||++|.+.+.|..+.. ...|+++|+|++|+|++  .++
T Consensus         2 ~~~KA~v~~~~~~~~~~~i~-~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~-~~~p~v~g~e~~G~v~~--~~~   77 (152)
T d1xa0a1           2 SAFQAFVVNKTETEFTAGVQ-TISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIV-KTYPFVPGIDLAGVVVS--SQH   77 (152)
T ss_dssp             CEEEEEEEEEETTEEEEEEE-EEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSC-CSSSBCCCSEEEEEEEE--CCS
T ss_pred             CceEEEEEEecCCceEEEEE-EccCCCCCCCEEEEEEEEeCCChHHHHHHhhccccc-ccccceeeeeeeeeeec--cCC
Confidence            56999999999998878888 999999999999999999999999999888876543 56789999999999998  556


Q ss_pred             CCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH-HcCCCCCCEEEEEc
Q 024775          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE-RTGFSAGKSILVLN  240 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~-~~~~~~g~~VlI~G  240 (262)
                      ..|++||+|+......   +....|+|+||++++++.++++|++++ .++++++++..|+|.++. +.+++ |++|||+|
T Consensus        78 ~~~~~g~~v~~~~~~~---~~~~~G~~aEy~~v~~~~~~~iP~~l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1          78 PRFREGDEVIATGYEI---GVTHFGGYSEYARLHGEWLVPLPKGLE-RIAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             SSCCTTCEEEEESTTB---TTTBCCSSBSEEEECGGGCEECCTTHH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CccccCCEEEEecCcc---ccccCCCcceeeeehhhccccCCCCCC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            7899999999875321   223469999999999999999999997 467888888888888875 56775 99999975

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=6.4e-28  Score=198.78  Aligned_cols=150  Identities=17%  Similarity=0.270  Sum_probs=124.9

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      |+.+|||+++++++++  |+++ ++++|++++|||||||.++|||++|++.++|..+.  .++|+++|||++|+|+++|+
T Consensus         1 m~~k~kA~v~~~~~~p--l~i~-ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~--~~~P~vlGHE~~G~V~~vG~   75 (184)
T d1vj0a1           1 MGLKAHAMVLEKFNQP--LVYK-EFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPR--VPLPIILGHEGAGRVVEVNG   75 (184)
T ss_dssp             CCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTT--CCSSBCCCCEEEEEEEEESS
T ss_pred             CCceEEEEEEecCCCC--cEEE-EeeCCCCCCCEEEEEEEEECCCCCchhheeccCCc--cccccccceeeeeeeeEEec
Confidence            6788999999999976  7777 89999999999999999999999999999998764  46899999999999999999


Q ss_pred             CCC-----CCCCCCEEEEecCccc-------------------cCC--------CCCCCceeeEEEec-CCCeEECCCCC
Q 024775          160 QVK-----EFKEGDEVYGDINEKA-------------------LEG--------PKQFGSLAEYTAVE-ERLLAPKPKNL  206 (262)
Q Consensus       160 ~v~-----~~~~Gd~V~~~~~~~~-------------------~~~--------~~~~G~~ae~~~v~-~~~~~~lP~~~  206 (262)
                      +|+     .+++||+|+......|                   ..+        ....|+|+||++++ +..++++|+++
T Consensus        76 ~v~~~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~~ip~~l  155 (184)
T d1vj0a1          76 EKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKI  155 (184)
T ss_dssp             CCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTC
T ss_pred             cccccccccccceeeeEeccccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEEECCCCC
Confidence            986     4689999987542110                   111        12378999999995 67899999999


Q ss_pred             CHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEc
Q 024775          207 DFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN  240 (262)
Q Consensus       207 ~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~G  240 (262)
                      ++++      ++.+|+++++++++++|++|||+-
T Consensus       156 ~~~~------pl~~A~~a~~~~~~~~G~~VlI~~  183 (184)
T d1vj0a1         156 THRL------PLKEANKALELMESREALKVILYP  183 (184)
T ss_dssp             CEEE------EGGGHHHHHHHHHHTSCSCEEEEC
T ss_pred             CHHH------HHHHHHHHHHHhCCCcCCEEEEee
Confidence            8653      234688899999999999999983

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.95  E-value=1.8e-27  Score=194.59  Aligned_cols=151  Identities=28%  Similarity=0.337  Sum_probs=123.2

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCC------CCCCCCCCCCccEEEEEEEe
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKA------TDSPLPTVPGYDVAGVVVKV  157 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~------~~~~~p~~~G~e~vG~Vv~v  157 (262)
                      |||++++++|++  |+++ +++.|+|++|||||||.++|||++|++.++|.++.      ...++|+++|||++|+|+++
T Consensus         1 MKA~~~~~~G~p--l~i~-dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~   77 (177)
T d1jvba1           1 MRAVRLVEIGKP--LSLQ-EIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV   77 (177)
T ss_dssp             CEEEEECSTTSC--CEEE-ECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEE
T ss_pred             CeEEEEEeCCCC--CEEE-EeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeee
Confidence            899999999987  7777 99999999999999999999999999999986542      23568999999999999999


Q ss_pred             CCCCCCCCCCCEEEEecCcc------------------ccCCCCCCCceeeEEEecCCC-eEECCCCCCHhhHhcccchH
Q 024775          158 GTQVKEFKEGDEVYGDINEK------------------ALEGPKQFGSLAEYTAVEERL-LAPKPKNLDFVQAAGLPLAI  218 (262)
Q Consensus       158 G~~v~~~~~Gd~V~~~~~~~------------------~~~~~~~~G~~ae~~~v~~~~-~~~lP~~~~~~~aa~l~~~~  218 (262)
                      |+++++|++||+|++.....                  ...+....|+|+||+++++.. ++++|+..+.+.++....++
T Consensus        78 g~~v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~~~~~~~~~a~~~~~~~  157 (177)
T d1jvba1          78 GDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEA  157 (177)
T ss_dssp             CTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEECSSSCCCCEEEEEGGGH
T ss_pred             ccCccccccCceEeeeeccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEEECCCCChHHHHHHHHHHH
Confidence            99999999999998754321                  123345679999999998655 55666655544444446788


Q ss_pred             HHHHHHHHHcCCCCCCEEEE
Q 024775          219 ETAYEGLERTGFSAGKSILV  238 (262)
Q Consensus       219 ~tA~~al~~~~~~~g~~VlI  238 (262)
                      .++++++..+++ .|++|||
T Consensus       158 ~~a~~~~~~~~~-~G~~VlI  176 (177)
T d1jvba1         158 NEAIDNLENFKA-IGRQVLI  176 (177)
T ss_dssp             HHHHHHHHTTCC-CSEEEEE
T ss_pred             HHHHHHHHhhcc-cCCceEC
Confidence            899999988887 5999987

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=1.3e-27  Score=186.54  Aligned_cols=131  Identities=33%  Similarity=0.480  Sum_probs=117.7

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      ||||+++++|++  ++++ +.+.|++++|||+||+++++||++|++.++|.++.. ..+|+++|||++|+|         
T Consensus         1 MkA~~~~~~G~~--l~~~-e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~-~~~P~v~G~E~~G~V---------   67 (131)
T d1iz0a1           1 MKAWVLKRLGGP--LELV-DLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTR-LHPPFIPGMEVVGVV---------   67 (131)
T ss_dssp             CEEEEECSTTSC--EEEE-ECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSC-CCSSBCCCCEEEEEE---------
T ss_pred             CcEEEEccCCCC--CEEE-EccCCCCCCCEEEEEEEEEecccccccccccccccc-ccceeEeeeeeEEee---------
Confidence            899999999876  7777 999999999999999999999999999999976543 578999999999999         


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEE
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVL  239 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~  239 (262)
                        +||+|+++..         .|+|+||++++++.++++|+++++++++.+++.+.|||++|.+.. +.|++||++
T Consensus        68 --vGd~V~~~~~---------~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g-~~g~tvl~l  131 (131)
T d1iz0a1          68 --EGRRYAALVP---------QGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG-HTGKVVVRL  131 (131)
T ss_dssp             --TTEEEEEECS---------SCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT-CCBEEEEEC
T ss_pred             --ccceEEEEec---------cCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc-cCCCEEEEC
Confidence              3999998874         799999999999999999999999999999999999999996432 569999874

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=3.3e-30  Score=215.51  Aligned_cols=163  Identities=20%  Similarity=0.279  Sum_probs=132.3

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCC-------CCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEE
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVK-------EDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVK  156 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~-------~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~  156 (262)
                      +||++++++++   ++++ +++.|+++       +|||+|||.+++||++|++.++|..+   .++|+++|||++|+|++
T Consensus         2 ~kA~v~~~~~~---le~~-e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~---~~~P~v~GHE~~G~Vv~   74 (201)
T d1kola1           2 NRGVVYLGSGK---VEVQ-KIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT---AQVGLVLGHEITGEVIE   74 (201)
T ss_dssp             EEEEEEEETTE---EEEE-EECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC---CCTTCBCCCCEEEEEEE
T ss_pred             cEEEEEeCCCc---eEEE-EecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcc---cccceeccceeeeeeec
Confidence            79999999986   6776 88888764       59999999999999999999998765   46799999999999999


Q ss_pred             eCCCCCCCCCCCEEEEecCccc----------------------------cCCCCCCCceeeEEEecC--CCeEECCCCC
Q 024775          157 VGTQVKEFKEGDEVYGDINEKA----------------------------LEGPKQFGSLAEYTAVEE--RLLAPKPKNL  206 (262)
Q Consensus       157 vG~~v~~~~~Gd~V~~~~~~~~----------------------------~~~~~~~G~~ae~~~v~~--~~~~~lP~~~  206 (262)
                      +|++|+.|++||+|+..+...|                            .......|+|+||+++|.  ..++++|++.
T Consensus        75 vG~~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~iPd~~  154 (201)
T d1kola1          75 KGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRD  154 (201)
T ss_dssp             ECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHH
T ss_pred             cccccccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEEECCCCC
Confidence            9999999999999975432110                            011234689999999985  3699999987


Q ss_pred             CHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775          207 DFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE  258 (262)
Q Consensus       207 ~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga  258 (262)
                      ...+++.+...+.++++++.+.+.+.|+    +| +|++|++++|+||.+||
T Consensus       155 ~~~~~~~~~~~~~~~~~a~~~~~~~~g~----~g-~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         155 KAMEKINIAEVVGVQVISLDDAPRGYGE----FD-AGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             HHHHTCCHHHHHTEEEECGGGHHHHHHH----HH-HTCSCEEEECTTCSSCC
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCCCeE----Ee-eCHHHHHHHHHHHHcCC
Confidence            7777777777777777777665555554    36 99999999999999986

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.94  E-value=7.8e-27  Score=193.80  Aligned_cols=146  Identities=23%  Similarity=0.288  Sum_probs=122.4

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      ++|+|+++.+.+.+  |+++ +++.|+|++|||||||.+++||++|++.+.|.++   .++|+++|||++|+|+++|+++
T Consensus         2 k~~~Aav~~~~g~~--l~l~-~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~---~~~P~i~GHE~~G~V~~vG~~v   75 (194)
T d1f8fa1           2 KDIIAAVTPCKGAD--FELQ-ALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP---VPLPAVLGHEGSGIIEAIGPNV   75 (194)
T ss_dssp             EEEEEEEBCSTTCC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSBCCCCEEEEEEEEECTTC
T ss_pred             ceeEEEEEcCCCCC--cEEE-EeeCCCCCCCEEEEEEEEEEecCchHhhhhhccc---ccCCcccccceEEEeeecCccc
Confidence            56899999998876  6777 9999999999999999999999999999998765   4689999999999999999999


Q ss_pred             CCCCCCCEEEEecCccc---------------------cCCC--------------------CCCCceeeEEEecCCCeE
Q 024775          162 KEFKEGDEVYGDINEKA---------------------LEGP--------------------KQFGSLAEYTAVEERLLA  200 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~---------------------~~~~--------------------~~~G~~ae~~~v~~~~~~  200 (262)
                      ++|++||+|+..+.. |                     +.+.                    ...|+|+||.++++.+++
T Consensus        76 ~~~~vGDrVv~~~~~-Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~  154 (194)
T d1f8fa1          76 TELQVGDHVVLSYGY-CGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTV  154 (194)
T ss_dssp             CSCCTTCEEEECCCC-CSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEE
T ss_pred             eeEccCceeeeeccc-ccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEE
Confidence            999999999764321 0                     0000                    013789999999999999


Q ss_pred             ECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCc
Q 024775          201 PKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEF  259 (262)
Q Consensus       201 ~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~  259 (262)
                      ++|++++++++                        ++|.| +|++|++++|+||.+|++
T Consensus       155 ~ip~~i~~~~~------------------------~~i~g-~g~~g~~aiq~a~~~g~~  188 (194)
T d1f8fa1         155 KVTKDFPFDQL------------------------VKFYA-FDEINQAAIDSRKGITLK  188 (194)
T ss_dssp             EECTTCCGGGG------------------------EEEEE-GGGHHHHHHHHHHTSCSE
T ss_pred             ECCCCCCcccE------------------------EEEeC-cHHHHHHHHHHHHHcCCC
Confidence            99999876543                        34445 999999999999999985

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.93  E-value=5.9e-26  Score=188.89  Aligned_cols=153  Identities=24%  Similarity=0.298  Sum_probs=122.3

Q ss_pred             cccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCC
Q 024775           80 VPSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGT  159 (262)
Q Consensus        80 ~p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~  159 (262)
                      -+.+|||+++++++++  |+++ ++++|+|++|||||||.++|||++|++.++|..+   .++|.++|||++|+|+++|+
T Consensus         5 ~~~k~KAavl~~~~~~--l~i~-ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~---~~~P~i~GHE~~G~Vv~vG~   78 (198)
T d2jhfa1           5 KVIKCKAAVLWEEKKP--FSIE-EVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLV---TPLPVIAGHEAAGIVESIGE   78 (198)
T ss_dssp             SCEEEEEEEBCSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSC---CCSSBCCCCSEEEEEEEECT
T ss_pred             CceEEEEEEEecCCCC--CEEE-EEECCCCCCCEEEEEEEEEecccccceeecCCcc---cccceecccceeEEEEecCc
Confidence            4667999999999876  6777 9999999999999999999999999999999765   46799999999999999999


Q ss_pred             CCCCCCCCCEEEEecCcccc---------------------------------------CCCCCCCceeeEEEecCCCeE
Q 024775          160 QVKEFKEGDEVYGDINEKAL---------------------------------------EGPKQFGSLAEYTAVEERLLA  200 (262)
Q Consensus       160 ~v~~~~~Gd~V~~~~~~~~~---------------------------------------~~~~~~G~~ae~~~v~~~~~~  200 (262)
                      +++.+++||+|++.....|.                                       ......|+|+||+++++.+++
T Consensus        79 ~v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~  158 (198)
T d2jhfa1          79 GVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVA  158 (198)
T ss_dssp             TCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEE
T ss_pred             cccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHHeE
Confidence            99999999999875431110                                       001124899999999999999


Q ss_pred             ECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEc
Q 024775          201 PKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLN  240 (262)
Q Consensus       201 ~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~G  240 (262)
                      ++|+.++++.++....++.+...+.  ..+++|++|+|..
T Consensus       159 ~~p~~~~~e~l~~~~~~~~~v~~g~--~~l~~G~~VaVi~  196 (198)
T d2jhfa1         159 KIDAAFALDPLITHVLPFEKINEGF--DLLRSGESIRTIL  196 (198)
T ss_dssp             ECCTTSCCGGGEEEEEEGGGHHHHH--HHHHTTCCSEEEE
T ss_pred             ECCCCCCHHHHHHHHHHHHhhhhCC--ceeeCCCEEEEEE
Confidence            9999988876666544443322222  3467899998863

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=9.5e-26  Score=179.06  Aligned_cols=134  Identities=23%  Similarity=0.248  Sum_probs=115.1

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||+++++++++..++++ +++.|++++|||+|||.|++||+.|.+.+.|.++.. ..+|.++|+|++|+|+++|.+  .
T Consensus         1 MkA~v~~~~~~~~~l~i~-~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~-~~~p~v~G~e~~G~V~~~~~~--~   76 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQ-TLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKII-RNFPMIPGIDFAGTVRTSEDP--R   76 (146)
T ss_dssp             CEEEEEECC---CEEEEE-ECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCC-CSSSBCCCSEEEEEEEEECST--T
T ss_pred             CeEEEEEcCCCceEEEEE-EcCCCCCCCCEEEEEEeeccCccceeeEEEeecccc-cccceeccccccccceeeccC--C
Confidence            899999999999889998 999999999999999999999999999999976543 567899999999999998764  6


Q ss_pred             CCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHH
Q 024775          164 FKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEG  224 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~a  224 (262)
                      +++||+|++....   .+...+|+|+||+++|+++++++|+++++++|++++++..||+..
T Consensus        77 ~~~g~~v~~~~~~---~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~  134 (146)
T d1o89a1          77 FHAGQEVLLTGWG---VGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAII  134 (146)
T ss_dssp             CCTTCEEEEECTT---BTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHH
T ss_pred             ccceeeEEeeccc---ceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999886532   233457999999999999999999999999999999888777543

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.93  E-value=7.5e-28  Score=197.25  Aligned_cols=149  Identities=19%  Similarity=0.234  Sum_probs=115.8

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||+++.++++   ++++ +.+.|+++++|||||+.++|||++|++.+++..+.  .++|.++|||++|+|+++|+++++
T Consensus         1 MKa~v~~~~~~---l~i~-e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~--~~~P~i~GhE~~G~V~~vG~~v~~   74 (177)
T d1jqba1           1 MKGFAMLGINK---LGWI-EKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALG--DRKNMILGHEAVGEVVEVGSEVKD   74 (177)
T ss_dssp             CEEEEEEETTE---EEEE-ECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTC--CCSSEECCCCEEEEEEEECTTCCS
T ss_pred             CeEEEEEeCCC---eEEE-EeeCCCCCCCEEEEEEEEEecCCCcccccccCCCC--CCCCccCcceeeEEeeecccccce
Confidence            89999999987   7777 99999999999999999999999999877654332  467899999999999999999999


Q ss_pred             CCCCCEEEEecCccc---------------------cCCCCCCCceeeEEEecC--CCeEECCCCCCHhhHhcccchHHH
Q 024775          164 FKEGDEVYGDINEKA---------------------LEGPKQFGSLAEYTAVEE--RLLAPKPKNLDFVQAAGLPLAIET  220 (262)
Q Consensus       164 ~~~Gd~V~~~~~~~~---------------------~~~~~~~G~~ae~~~v~~--~~~~~lP~~~~~~~aa~l~~~~~t  220 (262)
                      |++||+|+..+...|                     ..+...+|+|+||+++|.  .+++++|+++++++++.....   
T Consensus        75 ~~vGdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~~~---  151 (177)
T d1jqba1          75 FKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVYH---  151 (177)
T ss_dssp             CCTTCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGEEEEEE---
T ss_pred             ecCCCcEEEeeeeccccccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeEEECCCCcchHHHHHHHHH---
Confidence            999999987543211                     122345799999999986  468999999998887665332   


Q ss_pred             HHHHHHHcCCCCCCEEEEEcCchHHHHHH
Q 024775          221 AYEGLERTGFSAGKSILVLNGSGGVGSLV  249 (262)
Q Consensus       221 A~~al~~~~~~~g~~VlI~Ga~G~vG~~a  249 (262)
                      ++..+       ++.++|+| .|++|+.+
T Consensus       152 ~~~~~-------~~~vlv~g-~gp~gl~a  172 (177)
T d1jqba1         152 GFDHI-------EEALLLMK-DKPKDLIK  172 (177)
T ss_dssp             SGGGH-------HHHHHHHH-HCCTTCSE
T ss_pred             HHHHh-------cCceEEEC-CCHHHhhe
Confidence            22222       23356666 66666543

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=2.9e-28  Score=196.89  Aligned_cols=157  Identities=28%  Similarity=0.294  Sum_probs=134.7

Q ss_pred             cceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCC
Q 024775           82 SEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQV  161 (262)
Q Consensus        82 ~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v  161 (262)
                      ++|||++++++++...|+++ +++.|++++|||||||+|+|||++|++.+.|..+.. ...|.++|+|++|+|++  +.+
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~-~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~-~~~~~~~g~e~~G~v~~--~~~   77 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVK-TISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIV-REYPLILGIDAAGTVVS--SND   77 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEE-EEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTC-SSCSEECCSEEEEEEEE--CSS
T ss_pred             CcEEEEEEEecCCCeEEEEE-EcCCCCCCCCEEEEEEEEecccchhhheeeeccccc-ccceeeeeeeccccccc--ccc
Confidence            56999999999998889998 999999999999999999999999999999876643 46678999999999998  456


Q ss_pred             CCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcC
Q 024775          162 KEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNG  241 (262)
Q Consensus       162 ~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga  241 (262)
                      ..+++||+|+.....   .+...+|+|+||+++|++.++++|+++++++|+.+++...|||.++...+...+++|||+|+
T Consensus        78 ~~~~~g~~v~~~~~~---~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~~~~~~~~Vli~ga  154 (162)
T d1tt7a1          78 PRFAEGDEVIATSYE---LGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLEETPGALKDILQNRI  154 (162)
T ss_dssp             TTCCTTCEEEEESTT---BTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECSTTHHHHHHHTTTTCC
T ss_pred             cccccceeeEeeecc---ceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence            789999999886542   23345799999999999999999999999999999999999997765444556678899887


Q ss_pred             chHH
Q 024775          242 SGGV  245 (262)
Q Consensus       242 ~G~v  245 (262)
                      .|++
T Consensus       155 ~G~v  158 (162)
T d1tt7a1         155 QGRV  158 (162)
T ss_dssp             SSEE
T ss_pred             cceE
Confidence            7753

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.92  E-value=8.2e-28  Score=195.62  Aligned_cols=160  Identities=19%  Similarity=0.202  Sum_probs=131.5

Q ss_pred             cceeEEEEcccCCc-ceEEEEe-eecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCC--------CCCCCCCCCccEE
Q 024775           82 SEMKAWLYGEYGGV-DVLKFDE-KVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKAT--------DSPLPTVPGYDVA  151 (262)
Q Consensus        82 ~~~ka~v~~~~g~~-~~l~~~~-~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~--------~~~~p~~~G~e~v  151 (262)
                      .+|||++++++|++ +.|++++ +++.|++++|||||||++++||++|+++++|..+..        ...+|.++|+|++
T Consensus         2 ~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~   81 (175)
T d1gu7a1           2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL   81 (175)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred             ceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccc
Confidence            36999999999987 3444431 677888999999999999999999999998865432        2356788999999


Q ss_pred             EEEEEeCCCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccchHHHHHHHHH--HcC
Q 024775          152 GVVVKVGTQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPLAIETAYEGLE--RTG  229 (262)
Q Consensus       152 G~Vv~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~~~~tA~~al~--~~~  229 (262)
                      |+|+++|.++..++.||+|+....        ..|+|+||++++++.++++|++++.+.+  +++..+|||+++.  ..+
T Consensus        82 g~V~~~~~~~~~~~~g~~v~~~~~--------~~g~~aey~~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~  151 (175)
T d1gu7a1          82 FEVIKVGSNVSSLEAGDWVIPSHV--------NFGTWRTHALGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDG  151 (175)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESSS--------CCCCSBSEEEEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCS
T ss_pred             cccccccccccccccccceecccc--------ccccccceeeehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcC
Confidence            999999999999999999987543        3689999999999999999998754444  3455668888875  357


Q ss_pred             CCCCCEEEEEcC-chHHHHHHHH
Q 024775          230 FSAGKSILVLNG-SGGVGSLVIQ  251 (262)
Q Consensus       230 ~~~g~~VlI~Ga-~G~vG~~aiq  251 (262)
                      +++||+|||+|+ +|++|+++||
T Consensus       152 ~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         152 TKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             SSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             CCCCCEEEEECccchhhhheEEe
Confidence            999999999984 4789998876

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.2e-24  Score=178.30  Aligned_cols=141  Identities=22%  Similarity=0.183  Sum_probs=113.7

Q ss_pred             eeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCCCCC
Q 024775           84 MKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQVKE  163 (262)
Q Consensus        84 ~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~v~~  163 (262)
                      |||++...++++  |+++ +++.|+|++|||||||.++|||++|++.++|..+.  ..+|.++|||++|+|+++|++|++
T Consensus         1 m~a~~~~~~~~p--l~i~-ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~--~~~P~i~GhE~~G~V~~vG~~V~~   75 (179)
T d1uufa1           1 IKAVGAYSAKQP--LEPM-DITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG--TVYPCVPGHEIVGRVVAVGDQVEK   75 (179)
T ss_dssp             CEEEEBSSTTSC--CEEE-ECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC--CCSSBCCCCCEEEEEEEECTTCCS
T ss_pred             CeEEEEccCCCC--CEEE-EecCCCCCCCEEEEEEEEECCCCCcceeeeeeecc--ccccccccccccccchhhcccccc
Confidence            899999999887  7777 99999999999999999999999999999997654  567999999999999999999999


Q ss_pred             CCCCCEEEEecCc---------------cc------------cCCCCCCCceeeEEEecCCCeEECCCCCCHhhHhcccc
Q 024775          164 FKEGDEVYGDINE---------------KA------------LEGPKQFGSLAEYTAVEERLLAPKPKNLDFVQAAGLPL  216 (262)
Q Consensus       164 ~~~Gd~V~~~~~~---------------~~------------~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~~~aa~l~~  216 (262)
                      +++||+|......               .|            .......|+|+||+++++++++++|+.....   .+..
T Consensus        76 ~~vGdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~~~~~---~~a~  152 (179)
T d1uufa1          76 YAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVADIEM---IRAD  152 (179)
T ss_dssp             CCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCCCEEE---ECGG
T ss_pred             CCCCCEEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEECCCCCcCh---hHhc
Confidence            9999999653210               00            0011235899999999999999999665322   2234


Q ss_pred             hHHHHHHHHHHcCCCC
Q 024775          217 AIETAYEGLERTGFSA  232 (262)
Q Consensus       217 ~~~tA~~al~~~~~~~  232 (262)
                      .+.++|+++.++.++-
T Consensus       153 ~l~~a~~a~~~a~v~~  168 (179)
T d1uufa1         153 QINEAYERMLRGDVKY  168 (179)
T ss_dssp             GHHHHHHHHHTTCSSS
T ss_pred             hhHHHHHHHHHhCccc
Confidence            5678999998776653

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.91  E-value=7.9e-24  Score=176.02  Aligned_cols=151  Identities=21%  Similarity=0.229  Sum_probs=120.4

Q ss_pred             ccceeEEEEcccCCcceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeCCC
Q 024775           81 PSEMKAWLYGEYGGVDVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVGTQ  160 (262)
Q Consensus        81 p~~~ka~v~~~~g~~~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG~~  160 (262)
                      .-+|||+++++++++  |+++ ++++|+|++|||||||.++|||++|++.++|..+   ..+|.++|||++|+|+++|++
T Consensus         6 ~~~~KAav~~~~g~~--l~i~-ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~---~~~P~i~GHE~~G~Vv~~G~~   79 (198)
T d1p0fa1           6 DITCKAAVAWEPHKP--LSLE-TITVAPPKAHEVRIKILASGICGSDSSVLKEIIP---SKFPVILGHEAVGVVESIGAG   79 (198)
T ss_dssp             CEEEEEEEBSSTTSC--CEEE-EEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC---CCSSBCCCCCEEEEEEEECTT
T ss_pred             ceEEEEEEEccCCCC--CEEE-EEECCCCCCCEEEEEEEEEEEecccceeeeeccc---cccccccceeeeeeeeecCcc
Confidence            347999999999876  6777 9999999999999999999999999999999765   568999999999999999999


Q ss_pred             CCCCCCCCEEEEecCccc-------------c--------------------------CCCCCCCceeeEEEecCCCeEE
Q 024775          161 VKEFKEGDEVYGDINEKA-------------L--------------------------EGPKQFGSLAEYTAVEERLLAP  201 (262)
Q Consensus       161 v~~~~~Gd~V~~~~~~~~-------------~--------------------------~~~~~~G~~ae~~~v~~~~~~~  201 (262)
                      ++++++||+|++.....|             +                          ......|+|+||+.+++..+++
T Consensus        80 v~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~k  159 (198)
T d1p0fa1          80 VTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAK  159 (198)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEE
T ss_pred             cccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEE
Confidence            999999999987542111             0                          0001247899999999999999


Q ss_pred             CCCCCCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHH
Q 024775          202 KPKNLDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGS  247 (262)
Q Consensus       202 lP~~~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~  247 (262)
                      +|+.++.+.++...+.+.+         +.+++.|+|.| +|++|+
T Consensus       160 ip~~~~~~~~~~~~~~~~~---------v~~~~~vlv~G-~G~iGl  195 (198)
T d1p0fa1         160 IDPKINVNFLVSTKLTLDQ---------INKAFELLSSG-QGVRSI  195 (198)
T ss_dssp             ECTTSCGGGGEEEEECGGG---------HHHHHHHTTTS-SCSEEE
T ss_pred             CCCCCCHHHHHHhhcchhh---------cCCCCEEEEEC-CCcceE
Confidence            9999988776655444322         33444577777 777664

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.74  E-value=4.3e-17  Score=128.62  Aligned_cols=134  Identities=15%  Similarity=0.174  Sum_probs=103.2

Q ss_pred             ceeEEEEccc--CCc--ceEEEEeeecCCCCCCCeEEEEEEEEecChhhHHhHcCCCCCCCCCCCCCCCccEEEEEEEeC
Q 024775           83 EMKAWLYGEY--GGV--DVLKFDEKVTVPQVKEDQVLIKVVAAALNPVDGKRRQGKFKATDSPLPTVPGYDVAGVVVKVG  158 (262)
Q Consensus        83 ~~ka~v~~~~--g~~--~~l~~~~~~~~p~~~~~eVlVkV~a~~i~~sD~~~~~g~~~~~~~~~p~~~G~e~vG~Vv~vG  158 (262)
                      +.|+|++.++  |.+  +.|+++ +.++|+|++||||||++|.++++..+..+..      .+.+..+..+++|+|++  
T Consensus         3 ~~k~~vl~~~P~G~P~~~~f~l~-e~~ip~~~~gevLvk~~~~svDp~~R~~~~~------~~~g~~~~g~~vg~Vv~--   73 (147)
T d1v3va1           3 KAKSWTLKKHFQGKPTQSDFELK-TVELPPLKNGEVLLEALFLSVDPYMRIASKR------LKEGAVMMGQQVARVVE--   73 (147)
T ss_dssp             EEEEEEESSCCCSSCCGGGEEEE-EEECCCCCTTCEEEEEEEEECCTHHHHHGGG------SCTTSBCCCCEEEEEEE--
T ss_pred             ccEEEEEccCCCCCCcccceEEE-EEECCCCCCCEEEEEEEEEeEcccccccccc------cccCCccccceEEEEEE--
Confidence            4799999887  433  569999 8999999999999999999999987655432      23345677789999988  


Q ss_pred             CCCCCCCCCCEEEEecCccccCCCCCCCceeeEEEecCCCeEECCCCCCH-----hhHhcccchHHH-HHHHHHHcCCCC
Q 024775          159 TQVKEFKEGDEVYGDINEKALEGPKQFGSLAEYTAVEERLLAPKPKNLDF-----VQAAGLPLAIET-AYEGLERTGFSA  232 (262)
Q Consensus       159 ~~v~~~~~Gd~V~~~~~~~~~~~~~~~G~~ae~~~v~~~~~~~lP~~~~~-----~~aa~l~~~~~t-A~~al~~~~~~~  232 (262)
                      +++.+|++||+|++            .++|+||.+++...+.++|+..+.     ...+++....+| ||.++ ....+.
T Consensus        74 S~~~~f~~GD~V~g------------~~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl-~~~~k~  140 (147)
T d1v3va1          74 SKNSAFPAGSIVLA------------QSGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEM-LNGANL  140 (147)
T ss_dssp             ESCTTSCTTCEEEE------------CCCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHH-HTTCCS
T ss_pred             eCCCcccCCCEEEE------------ccCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHh-hCCCCC
Confidence            77889999999987            478999999999999999866432     234445455555 55455 333567


Q ss_pred             CCEEEE
Q 024775          233 GKSILV  238 (262)
Q Consensus       233 g~~VlI  238 (262)
                      |++||+
T Consensus       141 Getvv~  146 (147)
T d1v3va1         141 GKAVVT  146 (147)
T ss_dssp             SEEEEE
T ss_pred             CCEEEe
Confidence            999987

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.19  E-value=9.5e-12  Score=99.58  Aligned_cols=56  Identities=29%  Similarity=0.390  Sum_probs=53.3

Q ss_pred             CCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       206 ~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +++++||.+++++.|||+++++.++++||+|||+||+|++|++++|+||.+|++|+
T Consensus         1 ls~eeAA~l~~~~~TA~~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi   56 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVL   56 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccchhhhhhhhcccccccc
Confidence            57899999999999999999999999999999999999999999999999999875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.05  E-value=1.3e-10  Score=91.98  Aligned_cols=55  Identities=24%  Similarity=0.335  Sum_probs=51.9

Q ss_pred             CCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       206 ~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ++++++|.+++++.|||++++++++++||+|+|+| +|++|++++|+||.+|++|+
T Consensus         1 v~f~~aA~l~ca~~Ta~~al~~~~~~~g~~VlV~G-aG~vG~~~~~~ak~~G~~Vi   55 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGLKQTNARPGQWVAISG-IGGLGHVAVQYARAMGLHVA   55 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEee-ccccHHHHHHHHHHcCCccc
Confidence            57999999999999999999999999999999998 79999999999999999874

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=9e-11  Score=81.55  Aligned_cols=56  Identities=25%  Similarity=0.077  Sum_probs=50.5

Q ss_pred             CCHhhHhcccchHHHHHHHHH----HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          206 LDFVQAAGLPLAIETAYEGLE----RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       206 ~~~~~aa~l~~~~~tA~~al~----~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +++++++.++.+..|||.++.    ....+++++|||+||+|++|.+++|+||.+|++|.
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi   60 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVV   60 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEE
Confidence            578999999999999998873    24678999999999999999999999999999885

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.94  E-value=4.4e-10  Score=88.68  Aligned_cols=55  Identities=27%  Similarity=0.323  Sum_probs=51.9

Q ss_pred             CCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       206 ~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +++++||.++++..|||+++++.++++||+|+|+| +|++|++++|+|+..|++|+
T Consensus         1 ls~eeAA~l~~~~~Ta~~al~~~~~~~g~~vlv~G-~G~iG~~a~~~a~~~g~~v~   55 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKALKVTGAKPGEWVAIYG-IGGLGHVAVQYAKAMGLNVV   55 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHHTCCTTCEEEEEC-CSTTHHHHHHHHHHTTCEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEee-cccchhhhhHHHhcCCCeEe
Confidence            57899999999999999999999999999999997 79999999999999999874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=6e-10  Score=88.39  Aligned_cols=54  Identities=26%  Similarity=0.247  Sum_probs=49.9

Q ss_pred             CHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          207 DFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       207 ~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +++.||.+.|+..|+|+++++.++++||+|+|+| +|++|++++|+||.+|++|+
T Consensus         2 p~e~AApl~cag~Ta~~al~~~~~~~g~~vlI~G-aG~vG~~a~q~ak~~G~~vi   55 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPLVRNGCGPGKKVGIVG-LGGIGSMGTLISKAMGAETY   55 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHHTTCSTTCEEEEEC-CSHHHHHHHHHHHHHTCEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEC-CCCcchhHHHHhhhcccccc
Confidence            4577888999999999999999999999999998 69999999999999999874

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=6.1e-10  Score=88.32  Aligned_cols=55  Identities=24%  Similarity=0.225  Sum_probs=50.1

Q ss_pred             CCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       206 ~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+++.+|.+.|+..|+|++++++++++||+|+|+| +|++|++++|+||.+|++++
T Consensus         4 ~~~a~~Apl~Cag~Tay~al~~~~~~~G~~VlI~G-aG~vG~~a~qlak~~Ga~~i   58 (168)
T d1uufa2           4 EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVG-IGGLGHMGIKLAHAMGAHVV   58 (168)
T ss_dssp             GGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHhCCCCCCEEEEec-cchHHHHHHHHhhcccccch
Confidence            45678888899999999999999999999999998 69999999999999999764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.83  E-value=2.6e-09  Score=84.51  Aligned_cols=53  Identities=26%  Similarity=0.461  Sum_probs=50.6

Q ss_pred             CCHhhHhcccchHHHHHHHHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCC
Q 024775          206 LDFVQAAGLPLAIETAYEGLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLE  258 (262)
Q Consensus       206 ~~~~~aa~l~~~~~tA~~al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga  258 (262)
                      +++.+||.++++..|||+++++.++++||+|+|+|++|++|++++|+++..|+
T Consensus         1 l~~~eAA~l~c~~~Ta~~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~   53 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSG   53 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeccccceeeeeeccccccc
Confidence            57899999999999999999999999999999999889999999999999996

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.58  E-value=3.9e-08  Score=77.83  Aligned_cols=53  Identities=23%  Similarity=0.338  Sum_probs=47.2

Q ss_pred             CHhhHhcccchHHHHHHHHHHc--CCCCCCEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775          207 DFVQAAGLPLAIETAYEGLERT--GFSAGKSILVLNGSGGVGSLVIQVCYYYLEFF  260 (262)
Q Consensus       207 ~~~~aa~l~~~~~tA~~al~~~--~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V  260 (262)
                      .+.++|.+++++.|||+++++.  .+++|++|+|+| +|++|++++|+|+.+|+++
T Consensus         5 ~l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~G-aG~vG~~~~~~a~~~g~~~   59 (172)
T d1h2ba2           5 KLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVG-VGGLGHIAVQLLKVMTPAT   59 (172)
T ss_dssp             HHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEEC-CSHHHHHHHHHHHHHCCCE
T ss_pred             hHHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeC-CChHHHHHHHHHHhhcCcc
Confidence            3578899999999999999764  589999999998 7999999999999999853

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.15  E-value=6.2e-07  Score=71.39  Aligned_cols=34  Identities=24%  Similarity=0.162  Sum_probs=32.1

Q ss_pred             cCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          228 TGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       228 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .+.++|++|||+||+|+||.+++|+||.+|++|+
T Consensus        27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Vi   60 (176)
T d1xa0a2          27 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVE   60 (176)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCCCCEEEEEeccchHHHHHHHHHHHcCCceE
Confidence            5788999999999999999999999999999985

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.6e-06  Score=68.92  Aligned_cols=37  Identities=30%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             HHHcCC-CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          225 LERTGF-SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       225 l~~~~~-~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      +++.+. ..+++|||+||+|++|.+++|+||.+|++|+
T Consensus        23 l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Vi   60 (177)
T d1o89a2          23 LEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVV   60 (177)
T ss_dssp             HHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEE
T ss_pred             HHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeE
Confidence            344554 4566999999999999999999999999975

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=4.2e-06  Score=65.71  Aligned_cols=35  Identities=34%  Similarity=0.422  Sum_probs=32.9

Q ss_pred             HcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          227 RTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       227 ~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      ..++++|++|||+||+|++|++++|+||.+|++|+
T Consensus        23 ~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi   57 (174)
T d1yb5a2          23 SACVKAGESVLVHGASGGVGLAACQIARAYGLKIL   57 (174)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEE
T ss_pred             HhCCCCCCEEEEEeccccccccccccccccCcccc
Confidence            57899999999999999999999999999999875

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=4.9e-05  Score=60.23  Aligned_cols=27  Identities=22%  Similarity=0.178  Sum_probs=25.6

Q ss_pred             CEEEEEcCchHHHHHHHHHHHHcCCcc
Q 024775          234 KSILVLNGSGGVGSLVIQVCYYYLEFF  260 (262)
Q Consensus       234 ~~VlI~Ga~G~vG~~aiqlAk~~Ga~V  260 (262)
                      ++|||+||+|++|++++|+||.+|+++
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~   58 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSR   58 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcc
Confidence            889999999999999999999999963

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=92.80  E-value=0.042  Score=37.51  Aligned_cols=29  Identities=14%  Similarity=0.094  Sum_probs=26.4

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|++|+|+| .|..|+.+++++...|++|+
T Consensus         4 ~~K~v~ViG-lG~sG~s~a~~L~~~g~~v~   32 (93)
T d2jfga1           4 QGKNVVIIG-LGLTGLSCVDFFLARGVTPR   32 (93)
T ss_dssp             TTCCEEEEC-CSHHHHHHHHHHHHTTCCCE
T ss_pred             CCCEEEEEe-ECHHHHHHHHHHHHCCCEEE
Confidence            578899999 89999999999999999875

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=87.42  E-value=0.23  Score=37.85  Aligned_cols=28  Identities=14%  Similarity=0.127  Sum_probs=25.0

Q ss_pred             CCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          233 GKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       233 g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .-+|+|+| +|.+|+.|++.|+.+|+.|+
T Consensus        32 pa~V~ViG-aGvaG~~A~~~A~~lGA~V~   59 (168)
T d1pjca1          32 PGKVVILG-GGVVGTEAAKMAVGLGAQVQ   59 (168)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             CcEEEEEC-CChHHHHHHHHHhhCCCEEE
Confidence            35688888 99999999999999999874

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=86.83  E-value=0.52  Score=32.93  Aligned_cols=37  Identities=8%  Similarity=-0.021  Sum_probs=31.1

Q ss_pred             HHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          224 GLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .++.....++++|+|.| +|.+|+-.++.++.+|.+|.
T Consensus        13 ~~~~l~~~~~~~vvVvG-gG~ig~E~A~~l~~~g~~vt   49 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVG-GSKTAVEYGCFFNATGRRTV   49 (121)
T ss_dssp             HHHHCCSCCCSEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHhhCCCCEEEEEC-CCHHHHHHHHHHHhcchhhe
Confidence            34556778899999999 99999999999999998763

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=85.38  E-value=0.26  Score=38.39  Aligned_cols=29  Identities=14%  Similarity=0.254  Sum_probs=27.1

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|.+|.|+| .|.+|..++++++.+|++|+
T Consensus        42 ~gk~vgIiG-~G~IG~~va~~l~~fg~~V~   70 (197)
T d1j4aa1          42 RDQVVGVVG-TGHIGQVFMQIMEGFGAKVI   70 (197)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             cCCeEEEec-ccccchhHHHhHhhhccccc
Confidence            588999999 99999999999999999885

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=83.71  E-value=0.37  Score=37.35  Aligned_cols=30  Identities=17%  Similarity=0.170  Sum_probs=27.5

Q ss_pred             CCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          231 SAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       231 ~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      -.|.+|.|+| .|.+|...+++++.+|++|+
T Consensus        47 L~gktvgIiG-~G~IG~~va~~l~~fg~~v~   76 (193)
T d1mx3a1          47 IRGETLGIIG-LGRVGQAVALRAKAFGFNVL   76 (193)
T ss_dssp             CTTCEEEEEC-CSHHHHHHHHHHHTTTCEEE
T ss_pred             eeCceEEEec-cccccccceeeeecccccee
Confidence            3688999999 99999999999999999874

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=83.25  E-value=0.36  Score=37.48  Aligned_cols=29  Identities=14%  Similarity=0.291  Sum_probs=26.9

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|.+|.|+| .|.+|..++++++.+|++|+
T Consensus        44 ~~ktvgIiG-~G~IG~~va~~l~~fg~~v~   72 (199)
T d1dxya1          44 GQQTVGVMG-TGHIGQVAIKLFKGFGAKVI   72 (199)
T ss_dssp             GGSEEEEEC-CSHHHHHHHHHHHHTTCEEE
T ss_pred             cceeeeeee-cccccccccccccccceeee
Confidence            578999999 99999999999999999885

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.71  E-value=0.36  Score=38.09  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=29.5

Q ss_pred             HHHHcCCCCCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          224 GLERTGFSAGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       224 al~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .++...+++|++||..| +|. |..++.+|+..|.+|+
T Consensus        70 ml~~L~l~~g~~VLeIG-sGs-GY~taila~l~g~~V~  105 (215)
T d1jg1a_          70 MLEIANLKPGMNILEVG-TGS-GWNAALISEIVKTDVY  105 (215)
T ss_dssp             HHHHHTCCTTCCEEEEC-CTT-SHHHHHHHHHHCSCEE
T ss_pred             HHHhhccCccceEEEec-CCC-ChhHHHHHHhhCceeE
Confidence            45778999999999998 544 8888889988887775

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=81.93  E-value=0.5  Score=36.12  Aligned_cols=29  Identities=21%  Similarity=0.204  Sum_probs=27.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|.+|.|+| .|.+|...+++++.+|++|+
T Consensus        41 ~gk~vgIiG-~G~IG~~va~~l~~~g~~v~   69 (181)
T d1qp8a1          41 QGEKVAVLG-LGEIGTRVGKILAALGAQVR   69 (181)
T ss_dssp             TTCEEEEES-CSTHHHHHHHHHHHTTCEEE
T ss_pred             cCceEEEec-cccccccceeeeeccccccc
Confidence            688999999 99999999999999999874

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.72  E-value=0.91  Score=34.35  Aligned_cols=51  Identities=20%  Similarity=0.237  Sum_probs=40.7

Q ss_pred             hcccchHHHHHHHHHHcCCC-CCCEEEEEcCchHHHHHHHHHHHHcCCccCC
Q 024775          212 AGLPLAIETAYEGLERTGFS-AGKSILVLNGSGGVGSLVIQVCYYYLEFFFS  262 (262)
Q Consensus       212 a~l~~~~~tA~~al~~~~~~-~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~~  262 (262)
                      +.+|+....-+..|++.++. .|.+|+|.|-+.-+|.-...++...|++|++
T Consensus        17 ~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~   68 (170)
T d1a4ia1          17 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTT   68 (170)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEE
T ss_pred             CCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEE
Confidence            44566666666667766654 8999999998889999999999999998863

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.21  E-value=0.54  Score=32.68  Aligned_cols=29  Identities=10%  Similarity=0.077  Sum_probs=26.0

Q ss_pred             CCCEEEEEcCchHHHHHHHHHHHHcCCccC
Q 024775          232 AGKSILVLNGSGGVGSLVIQVCYYYLEFFF  261 (262)
Q Consensus       232 ~g~~VlI~Ga~G~vG~~aiqlAk~~Ga~V~  261 (262)
                      .|.+|||.| .|.+|..-++.+...||+|+
T Consensus        11 ~~k~vlVvG-~G~va~~ka~~ll~~ga~v~   39 (113)
T d1pjqa1          11 RDRDCLIVG-GGDVAERKARLLLEAGARLT   39 (113)
T ss_dssp             BTCEEEEEC-CSHHHHHHHHHHHHTTBEEE
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence            578999999 99999999999999999763