Citrus Sinensis ID: 024780

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
MKLERYNKNGNEKKSAQVLATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDVCPNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQRIHQ
ccccccccccccccccccEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcc
ccccccccccccccccEEEcccccccccccccccccccccccccHEEcccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcc
mklerynkngnekKSAQVLATVSSstektgrpiegfhpslwgdhfltlasdcetndtTHQEEYEALKQEVRSMITatadtpaqKLQLVDAVQRLGVAYHFEQEIEDALEKIyhddfdnnddvdlYSVSLRFRLLRqqgfkvpcdvfekfkddegkFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLksmvsddvcpnnLAEQINHAldcplrralprvetrfflsvyprvdkhdKTLLKFAKLDFNLVQRIHQ
mklerynkngnekksaqVLATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDVCPNNLAEQINHALDCPLRRALPRVETRFflsvyprvdkhdKTLLkfakldfnlvqrihq
MKLERYNKNGNEKKSAQVLATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHddfdnnddvdLYSVSLRFRLLRQQGFKVPCDVfekfkddegkfkASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDVCPNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQRIHQ
**********************************GFHPSLWGDHFLTLASDCET******************MITATADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDVCPNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQ****
*************************************PSLWGDHFLTLASD**********EYEALKQEVRSMITATADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDVCPNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQRIHQ
*****************************GRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDVCPNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQRIHQ
**************SAQ*L****SSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDVCPNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQRIH*
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SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
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MKLERYNKNGNEKKSAQVLATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDVCPNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQRIHQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query262 2.2.26 [Sep-21-2011]
Q94JS8 560 (E)-beta-farnesene syntha N/A no 0.931 0.435 0.657 5e-88
Q6Q3H3 557 (-)-germacrene D synthase yes no 0.942 0.443 0.524 7e-70
Q6Q3H2 556 Valencene synthase OS=Vit no no 0.938 0.442 0.513 7e-68
Q43714 555 (+)-delta-cadinene syntha N/A no 0.935 0.441 0.510 2e-67
Q39760 554 (+)-delta-cadinene syntha N/A no 0.889 0.420 0.514 6e-65
O49853 554 (+)-delta-cadinene syntha N/A no 0.889 0.420 0.514 8e-65
B5A435 559 Sesquiterpene synthase OS N/A no 0.881 0.413 0.514 2e-64
P93665 554 (+)-delta-cadinene syntha N/A no 0.889 0.420 0.510 2e-63
E3W207 559 Sesquiterpene synthase OS N/A no 0.881 0.413 0.506 2e-63
Q39761 554 (+)-delta-cadinene syntha N/A no 0.889 0.420 0.502 3e-63
>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1 Back     alignment and function desciption
 Score =  323 bits (829), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 165/251 (65%), Positives = 194/251 (77%), Gaps = 7/251 (2%)

Query: 15  SAQVLATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMI 74
           S  +LA VSSSTE+T RPI  FHP+LWG+HFL  A+D ET D   QE++ ALKQEVR MI
Sbjct: 5   SIPLLAAVSSSTEETVRPIADFHPTLWGNHFLKSAADVETIDAATQEQHAALKQEVRRMI 64

Query: 75  TATADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLL 134
           T TA+  AQKL ++DAVQRLGVAYHFE+EIED L K+ HD     D  DLY VSLRFRL 
Sbjct: 65  TTTANKLAQKLHMIDAVQRLGVAYHFEKEIEDELGKVSHD----LDSDDLYVVSLRFRLF 120

Query: 135 RQQGFKVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTH 194
           RQQG K+ CDVF+KFKDDEGKFK SL+ D++G+LSLYEA +LAIRGEDILDEAI FT TH
Sbjct: 121 RQQGVKISCDVFDKFKDDEGKFKESLINDIRGMLSLYEAAYLAIRGEDILDEAIVFTTTH 180

Query: 195 LKSM--VSDDVCPN-NLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAK 251
           LKS+  +SD    N NLAEQI H+L  PLR+A  R+E R+FL +Y R D HD+TLLKFAK
Sbjct: 181 LKSVISISDHSHANSNLAEQIRHSLQIPLRKAAARLEARYFLDIYSRDDLHDETLLKFAK 240

Query: 252 LDFNLVQRIHQ 262
           LDFN++Q  HQ
Sbjct: 241 LDFNILQAAHQ 251
Sesquiterpene cyclase catalyzing the production of beta-farnesene from farnesyl diphosphate.
Citrus junos (taxid: 135197)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 4EC: 7
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|Q43714|DCS3_GOSAR (+)-delta-cadinene synthase isozyme A OS=Gossypium arboreum GN=CAD1-A PE=2 SV=1 Back     alignment and function description
>sp|Q39760|DCS2_GOSAR (+)-delta-cadinene synthase isozyme XC14 OS=Gossypium arboreum PE=2 SV=1 Back     alignment and function description
>sp|O49853|DCS4_GOSAR (+)-delta-cadinene synthase isozyme C2 OS=Gossypium arboreum GN=CAD1-C2 PE=2 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|P93665|DCS1_GOSHI (+)-delta-cadinene synthase OS=Gossypium hirsutum GN=CDN1 PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|Q39761|DCS1_GOSAR (+)-delta-cadinene synthase isozyme XC1 OS=Gossypium arboreum PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
9864189 555 terpene synthase [Citrus junos] 0.946 0.446 0.931 1e-126
75250254 560 RecName: Full=(E)-beta-farnesene synthas 0.931 0.435 0.657 3e-86
300079902 560 (E)-beta-farnesene synthase [Citrus reti 0.931 0.435 0.649 4e-86
313585892 551 Tps2-1 [Clausena lansium] 0.916 0.435 0.622 7e-82
261343328 548 terpene synthase 1 [Citrus sinensis] 0.904 0.432 0.618 7e-77
33316389 548 valencene synthase [Citrus sinensis] 0.904 0.432 0.614 5e-76
19880625 548 putative terpene synthase [Citrus x para 0.904 0.432 0.618 9e-76
147828675 557 hypothetical protein VITISV_013313 [Viti 0.942 0.443 0.524 2e-68
147856860 557 hypothetical protein VITISV_030783 [Viti 0.942 0.443 0.524 2e-68
359493937 557 PREDICTED: (-)-germacrene D synthase [Vi 0.942 0.443 0.524 3e-68
>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos] Back     alignment and taxonomy information
 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/248 (93%), Positives = 240/248 (96%)

Query: 15  SAQVLATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMI 74
           SAQVLATVSSSTEKT RPI GFHP+LWGD+FLTLASDC+T+DTTHQEEYEALKQEVRSMI
Sbjct: 2   SAQVLATVSSSTEKTVRPIAGFHPNLWGDYFLTLASDCKTDDTTHQEEYEALKQEVRSMI 61

Query: 75  TATADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLL 134
           TATADTPAQKLQLVDAVQRLGVAYHFEQEIEDA+EKIYHDDFDNNDDVDLY+VSLRFRLL
Sbjct: 62  TATADTPAQKLQLVDAVQRLGVAYHFEQEIEDAMEKIYHDDFDNNDDVDLYTVSLRFRLL 121

Query: 135 RQQGFKVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTH 194
           RQQGFKVPCDVF KFKDDEGKFKASLV+DV GILSLYEAGHLAIRGE ILDEAIAFTRTH
Sbjct: 122 RQQGFKVPCDVFAKFKDDEGKFKASLVRDVHGILSLYEAGHLAIRGEGILDEAIAFTRTH 181

Query: 195 LKSMVSDDVCPNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDF 254
           L+SMVS DVCPNNLAEQINH LDCPLRRALPRVETRFFLSVYPR DKHDKTLLKF+KLDF
Sbjct: 182 LQSMVSQDVCPNNLAEQINHTLDCPLRRALPRVETRFFLSVYPRDDKHDKTLLKFSKLDF 241

Query: 255 NLVQRIHQ 262
           NLVQRIHQ
Sbjct: 242 NLVQRIHQ 249

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|75250254|sp|Q94JS8.1|FARS_CITJU RecName: Full=(E)-beta-farnesene synthase; Short=CjFS; AltName: Full=Terpene synthase 10 gi|14134188|gb|AAK54279.1| (E)-beta-farnesene synthase [Citrus junos] Back     alignment and taxonomy information
>gi|300079902|gb|ADJ67476.1| (E)-beta-farnesene synthase [Citrus reticulata] Back     alignment and taxonomy information
>gi|313585892|gb|ADR71055.1| Tps2-1 [Clausena lansium] Back     alignment and taxonomy information
>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis] Back     alignment and taxonomy information
>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis] Back     alignment and taxonomy information
>gi|19880625|gb|AAM00426.1|AF411120_1 putative terpene synthase [Citrus x paradisi] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
UNIPROTKB|B5A435 559 B5A435 "Sesquiterpene synthase 0.893 0.418 0.466 1.1e-53
UNIPROTKB|J7LJN5 555 J7LJN5 "Beta-caryophyllene syn 0.866 0.409 0.429 6.9e-47
UNIPROTKB|E2E2N7 555 TPS4 "Bicyclogermacrene syntha 0.858 0.405 0.412 6.2e-46
UNIPROTKB|B2KSJ5 571 B2KSJ5 "(+)-gamma-cadinene syn 0.881 0.404 0.392 4.4e-45
UNIPROTKB|B3TPQ6 550 B3TPQ6 "Beta-cubebene synthase 0.908 0.432 0.407 3.5e-43
UNIPROTKB|J7LP58 564 J7LP58 "Alpha-copaene/delta-ca 0.946 0.439 0.380 3.5e-43
UNIPROTKB|J7LMP2 565 J7LMP2 "Bicyclogermacrene synt 0.946 0.438 0.384 8.4e-42
UNIPROTKB|B5A434 576 B5A434 "(+)-alpha-terpineol sy 0.877 0.399 0.407 1.2e-40
UNIPROTKB|Q49SP4 545 Q49SP4 "Germacrene D synthase 0.870 0.418 0.377 3.7e-39
UNIPROTKB|B3TPQ7 592 B3TPQ7 "Alpha-terpineol syntha 0.973 0.430 0.366 6.6e-38
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
 Identities = 112/240 (46%), Positives = 153/240 (63%)

Query:    27 EKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQ 86
             ++  RPI  F PS+WGD F+  A + E      + + E LK++VR  + AT D P Q+L 
Sbjct:    15 KELSRPIANFPPSIWGDRFINYACEDENEQAQKERQVEELKEQVRRELAATVDKPLQQLN 74

Query:    87 LVDAVQRLGVAYHFEQEIEDALEKIY-HXXXXXX---XXXXLYSVSLRFRLLRQQGFKVP 142
             ++DA QRLG+AYHFE EIE++LE IY H             LYSV+L FRLLRQ G+KV 
Sbjct:    75 IIDATQRLGIAYHFENEIEESLEHIYLHTYVENNCFQGSHDLYSVALWFRLLRQDGYKVS 134

Query:   143 CDVXXXXXXXXXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDD 202
             CDV             SL++D +G+L LYEA HL++ GE++LD+A+ F +T L+S+V+  
Sbjct:   135 CDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGEEMLDDALEFAKTRLESIVNHL 194

Query:   203 VCPNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQRIHQ 262
               P  LAEQ+ HAL  PLR+ LPR+E  +F  +Y   D H+K LLK AKLDFNL+Q +H+
Sbjct:   195 NYP--LAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDSHNKALLKLAKLDFNLLQSLHK 252
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B5A434 B5A434 "(+)-alpha-terpineol synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ7 B3TPQ7 "Alpha-terpineol synthase, chloroplastic" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
cd00684 542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-113
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 6e-90
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 6e-24
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 3e-18
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  336 bits (863), Expect = e-113
 Identities = 114/238 (47%), Positives = 168/238 (70%), Gaps = 7/238 (2%)

Query: 31  RPIEGFHPSLWGD-HFLTLASDCETNDTTHQEEYEALKQEVRSMITAT--ADTPAQKLQL 87
           RP   F PSLWGD HFL+L+SD  + +   +EE E LK+EVR M+  +       ++L L
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSD-YSEEDELEEEIEELKEEVRKMLEDSEYPVDLFERLWL 59

Query: 88  VDAVQRLGVAYHFEQEIEDALEKIY--HDDFDNNDDVDLYSVSLRFRLLRQQGFKVPCDV 145
           +D +QRLG++YHFE EI++ L+ IY    +   +++ DLY+ +L FRLLRQ G+ V  DV
Sbjct: 60  IDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDV 119

Query: 146 FEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDD-VC 204
           F+KFKD++GKFK SL +DV+G+LSLYEA HL+  GEDILDEA++FT  HL+  +  + + 
Sbjct: 120 FKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWII 179

Query: 205 PNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQRIHQ 262
             +L+ +I +AL+ PL  +LPR+E R+++  Y + D H++TLL+ AKLDFN++Q +HQ
Sbjct: 180 DPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQ 237

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 262
cd00684 542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PLN02592 800 ent-copalyl diphosphate synthase 100.0
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=4.6e-78  Score=596.06  Aligned_cols=229  Identities=50%  Similarity=0.865  Sum_probs=212.2

Q ss_pred             CCCCCCCCCCCcc-cccccCCCCccccchHHHHHHHHHHHHHHHHhhc--CCChhhhhhhhHHHHHhCcccccHHHHHHH
Q 024780           31 RPIEGFHPSLWGD-HFLTLASDCETNDTTHQEEYEALKQEVRSMITAT--ADTPAQKLQLVDAVQRLGVAYHFEQEIEDA  107 (262)
Q Consensus        31 Rr~a~~~PsiW~d-~fl~~~~~~~~~~~~~~~~~e~LkeeVr~ml~~~--~~d~~~~L~lID~LqRLGI~yhFe~EI~~~  107 (262)
                      ||+++|+||+||| .|+++++++.. ...+.+++++||++||+||...  +.|++++|+|||+||||||+|||++||+++
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~-~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~   79 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSE-EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEI   79 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcch-hHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence            7899999999999 66666554432 2267889999999999999864  679999999999999999999999999999


Q ss_pred             HHHHHhccCC-C-CCCCchhhHHHHHHHHHhcCccccccccccccccccccccchhhcHHHHHHHHHhhccCCcCchHHH
Q 024780          108 LEKIYHDDFD-N-NDDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILD  185 (262)
Q Consensus       108 L~~iy~~~~~-~-~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~Fkd~~G~F~~~l~~Dv~glLsLYeAS~L~~~gE~iLd  185 (262)
                      |++||++|.+ . ....||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||||||||||+++||+|||
T Consensus        80 L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLd  159 (542)
T cd00684          80 LDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILD  159 (542)
T ss_pred             HHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHH
Confidence            9999998832 1 2357999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhcC---CCCChhHHHHHHHhcCCCccCCcchhHHhhhhhccCCCCCCCHHHHHHHHHhhHHHHhhcC
Q 024780          186 EAIAFTRTHLKSMVSD---DVCPNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQRIHQ  262 (262)
Q Consensus       186 eA~~Ft~~~L~~~~~~---~~~~~~L~~~V~~aL~~P~h~~l~RleaR~yI~~Y~~~~~~n~~LLelAklDFn~~Qs~hq  262 (262)
                      ||+.||++||++.++.   ++++  |+++|++||++||||++||||||+||+.|++++++|++||||||+|||+||++||
T Consensus       160 eA~~ft~~~L~~~~~~~~~~~~~--l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq  237 (542)
T cd00684         160 EALSFTTKHLEEKLESNWIIDPD--LSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQ  237 (542)
T ss_pred             HHHHHHHHHHHHHhhccCCCCch--HHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHH
Confidence            9999999999999986   6777  9999999999999999999999999999999999999999999999999999997

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
3g4d_A 554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 3e-55
1hxg_A 548 Crystal Structure Of Teas W273sC440W Length = 548 4e-49
1hxc_A 548 Crystal Structure Of Teas C440w Length = 548 4e-49
1hx9_A 548 Crystal Structure Of Teas W273s Form 1 Length = 548 5e-49
5eau_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 5e-49
5eat_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 6e-49
5eas_A 548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 7e-49
3m01_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 3e-48
3lz9_A 550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 4e-48
4di5_A 535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 5e-47
3n0f_A 555 Crystal Structure Of Isoprene Synthase From Grey Po 2e-33
2j5c_A 569 Rational Conversion Of Substrate And Product Specif 7e-25
1n1b_A 549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 3e-23
2ong_A 543 Crystal Structure Of Of Limonene Synthase With 2- F 1e-20
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 1e-18
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 2e-15
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 4e-15
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 7e-14
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  211 bits (537), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 110/239 (46%), Positives = 150/239 (62%), Gaps = 6/239 (2%)
Query: 24  SSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQ 83
           SS +   RP   F PS+WGD FL      +  D   ++ ++ LK+EVR MI A      Q
Sbjct: 15  SSNKDEMRPKADFQPSIWGDLFLNCPD--KNIDAETEKRHQQLKEEVRKMIVAPMANSTQ 72
Query: 84  KLQLVDAVQRLGVAYHFEQEIEDALEKIYHXXXXXXXXXXLYSVSLRFRLLRQQGFKVPC 143
           KL  +D+VQRLGV+YHF +EIED LE IYH          LY+ S+RFRLLR+ G+ V C
Sbjct: 73  KLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAEND--LYTTSIRFRLLREHGYNVSC 130
Query: 144 DVXXXXXXXXXXXXASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDV 203
           DV            +S+  DV+G+L LY+A +L + GEDILDEAI+FT  HL   V+   
Sbjct: 131 DVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVASLD 190
Query: 204 CPNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDKHDKTLLKFAKLDFNLVQRIHQ 262
            P  L+E+++HAL   +RR LPRVE R +LSVY  ++ H+K LL+FAK+DFN++Q +H+
Sbjct: 191 HP--LSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHR 247
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 7e-80
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 1e-79
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 2e-79
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 9e-79
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 1e-77
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 2e-73
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 5e-55
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 4e-54
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 1e-52
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 2e-52
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
 Score =  249 bits (637), Expect = 7e-80
 Identities = 108/244 (44%), Positives = 164/244 (67%), Gaps = 7/244 (2%)

Query: 20  ATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATAD 79
           A V++  E+  RP+  F PSLWGD FL+ +   +  +  + +E EALK++ R+M+ AT  
Sbjct: 6   AAVANYEEEIVRPVADFSPSLWGDQFLSFSIKNQVAEK-YAKEIEALKEQTRNMLLATGM 64

Query: 80  TPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLLRQQGF 139
             A  L L+D ++RLG++YHFE+EI+D L++IY+ + + ND   L + +L+FRLLRQ GF
Sbjct: 65  KLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQNSNCND---LCTSALQFRLLRQHGF 121

Query: 140 KVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMV 199
            +  ++F KF+D+ GKFK SL  DV G+L+LYEA H+    +DIL++A+AF+  HL+S  
Sbjct: 122 NISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA 181

Query: 200 SDDVCPNNLAEQINHALDCPLRRALPRVETRFFLSVYPRVDK-HDKTLLKFAKLDFNLVQ 258
                 + L EQ+ HAL+  L + +PRVETRFF+S     ++  +  LL+FAKLDFNL+Q
Sbjct: 182 PH--LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQ 239

Query: 259 RIHQ 262
            +H+
Sbjct: 240 MLHK 243
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
3m00_A 550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3g4d_A 554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
2ong_A 543 4S-limonene synthase; monoterpene synthase, monote 100.0
3n0f_A 555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2j5c_A 569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1n1b_A 549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.5
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
Probab=100.00  E-value=8.1e-81  Score=615.27  Aligned_cols=240  Identities=45%  Similarity=0.806  Sum_probs=213.4

Q ss_pred             hhhhhhhhhccccCccCCCCCCCCCCCCcccccccCCCCccccchHHHHHHHHHHHHHHHHhhcCCChhhhhhhhHHHHH
Q 024780           14 KSAQVLATVSSSTEKTGRPIEGFHPSLWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQR   93 (262)
Q Consensus        14 ~~~~~~~~~~~~~~~~~Rr~a~~~PsiW~d~fl~~~~~~~~~~~~~~~~~e~LkeeVr~ml~~~~~d~~~~L~lID~LqR   93 (262)
                      |+|++   +++..+++.||+||||||+|||+||++.+.. ..++.+.+++++||++||+||.+...+++++|+|||+|||
T Consensus         3 ~~~~~---~~~~~~~~~R~~~~~~ps~W~d~fl~~~~~~-~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqr   78 (550)
T 3m00_A            3 MASAA---VANYEEEIVRPVADFSPSLWGDQFLSFSIKN-QVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIER   78 (550)
T ss_dssp             ----------------CCCCCCCCCCTTTTTTSCCCCCH-HHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred             ccccc---ccccccccCCCCCCCCcccccccccccCCcc-hhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence            66666   2333556789999999999999999975432 2356788999999999999997435799999999999999


Q ss_pred             hCcccccHHHHHHHHHHHHhccCCCCCCCchhhHHHHHHHHHhcCccccccccccccccccccccchhhcHHHHHHHHHh
Q 024780           94 LGVAYHFEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEA  173 (262)
Q Consensus        94 LGI~yhFe~EI~~~L~~iy~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DvF~~Fkd~~G~F~~~l~~Dv~glLsLYeA  173 (262)
                      |||+|||++||+++|++||++|..   ..||++|||+|||||||||+||||||++|+|++|+|++++.+||+|||+||||
T Consensus        79 LGi~~hF~~EI~~~L~~i~~~~~~---~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~l~~d~~glL~LYeA  155 (550)
T 3m00_A           79 LGISYHFEKEIDDILDQIYNQNSN---CNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEA  155 (550)
T ss_dssp             TTCGGGCHHHHHHHHHHHHHHCCC---CSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGGGGGCHHHHHHHHHH
T ss_pred             cCchhhhHHHHHHHHHHHHHhccc---CCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCccccchhchHHHHHHHHH
Confidence            999999999999999999998832   47999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCcCchHHHHHHHHHHHHHHhhhcCCCCChhHHHHHHHhcCCCccCCcchhHHhhhhh-ccCCCCCCCHHHHHHHHH
Q 024780          174 GHLAIRGEDILDEAIAFTRTHLKSMVSDDVCPNNLAEQINHALDCPLRRALPRVETRFFLS-VYPRVDKHDKTLLKFAKL  252 (262)
Q Consensus       174 S~L~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~L~~~V~~aL~~P~h~~l~RleaR~yI~-~Y~~~~~~n~~LLelAkl  252 (262)
                      |||++|||+|||+|+.||++||++.++.++++  |+++|.|||++||||++||||||+||+ .|++++++|++|||||||
T Consensus       156 s~l~~~gE~iLdeA~~fs~~~L~~~~~~~~~~--l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~~~~~n~~lLelAkl  233 (550)
T 3m00_A          156 SHVRTHADDILEDALAFSTIHLESAAPHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKL  233 (550)
T ss_dssp             HTTCCTTCGGGTTHHHHHHHHHHHHGGGCCTT--HHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCTTCCHHHHHHHHH
T ss_pred             HhcCCCCcHHHHHHHHHHHHHHHHHHhccCcc--HHHHHHHHhCCCccCCchHHHHHHHHHHHhcccccccHHHHHHHHH
Confidence            99999999999999999999999988777778  999999999999999999999999999 999999999999999999


Q ss_pred             hhHHHHhhcC
Q 024780          253 DFNLVQRIHQ  262 (262)
Q Consensus       253 DFn~~Qs~hq  262 (262)
                      |||+||++||
T Consensus       234 dFn~~Q~~hq  243 (550)
T 3m00_A          234 DFNLLQMLHK  243 (550)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhH
Confidence            9999999997
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 262
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 1e-75
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 1e-72
d5easa2 328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 2e-05
d1n1ba2 328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 6e-05
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score =  226 bits (577), Expect = 1e-75
 Identities = 89/197 (45%), Positives = 134/197 (68%), Gaps = 6/197 (3%)

Query: 40  LWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQRLGVAYH 99
           LWGD FL+ + D +  +  + +E EALK++ RSM+ AT    A  L L+D ++RLG++YH
Sbjct: 1   LWGDQFLSFSIDNQVAEK-YAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYH 59

Query: 100 FEQEIEDALEKIYHDDFDNNDDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGKFKAS 159
           FE+EI++ L++IY+    N++  DL + +L+FRLLRQ GF +  ++F KF+D+ GKFK S
Sbjct: 60  FEKEIDEILDQIYNQ---NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKES 116

Query: 160 LVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMVSDDVCPNNLAEQINHALDCP 219
           L  DV G+L+LYEA H+    +DIL++A+AF+  HL+S        + L EQ+ HAL+  
Sbjct: 117 LASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAPH--LKSPLREQVTHALEQC 174

Query: 220 LRRALPRVETRFFLSVY 236
           L + +PRVETRFF+S  
Sbjct: 175 LHKGVPRVETRFFISSI 191
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpenoid cyclase N-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=2.7e-73  Score=496.06  Aligned_cols=195  Identities=46%  Similarity=0.834  Sum_probs=182.6

Q ss_pred             CCcccccccCCCCccccchHHHHHHHHHHHHHHHHhhcCCChhhhhhhhHHHHHhCcccccHHHHHHHHHHHHhccCCCC
Q 024780           40 LWGDHFLTLASDCETNDTTHQEEYEALKQEVRSMITATADTPAQKLQLVDAVQRLGVAYHFEQEIEDALEKIYHDDFDNN  119 (262)
Q Consensus        40 iW~d~fl~~~~~~~~~~~~~~~~~e~LkeeVr~ml~~~~~d~~~~L~lID~LqRLGI~yhFe~EI~~~L~~iy~~~~~~~  119 (262)
                      +|||+||++.++ +..++.+.+++++||++||+||.+...++.++|+|||+||||||+|||++||+++|++||+.|.   
T Consensus         1 iWgd~Fl~~~~~-~~~~~~~~~~~e~Lk~eVr~ml~~~~~~~~~~L~lID~LqRLGi~yhFe~EI~~~L~~i~~~~~---   76 (197)
T d5easa1           1 LWGDQFLSFSID-NQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQIYNQNS---   76 (197)
T ss_dssp             CCGGGGSCCCCC-HHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCC---
T ss_pred             CCCCcccCCCCC-chhHHHHHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC---
Confidence            799999997653 3446688999999999999999875579999999999999999999999999999999999872   


Q ss_pred             CCCchhhHHHHHHHHHhcCccccccccccccccccccccchhhcHHHHHHHHHhhccCCcCchHHHHHHHHHHHHHHhhh
Q 024780          120 DDVDLYSVSLRFRLLRQQGFKVPCDVFEKFKDDEGKFKASLVKDVQGILSLYEAGHLAIRGEDILDEAIAFTRTHLKSMV  199 (262)
Q Consensus       120 ~~~dL~~~AL~FRLLRqhGy~VS~DvF~~Fkd~~G~F~~~l~~Dv~glLsLYeAS~L~~~gE~iLdeA~~Ft~~~L~~~~  199 (262)
                      ...||++|||+|||||||||+||||||++|+|++|+|++++++||+|||+|||||||+++||+|||+|+.||+++|++.+
T Consensus        77 ~~~dl~~~AL~FRLLRqhGy~Vs~dvF~~Fkd~~G~f~~~l~~D~~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~  156 (197)
T d5easa1          77 NCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAA  156 (197)
T ss_dssp             CCCSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCGGGGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHG
T ss_pred             CCCcHHHHHHHHHHHHHcCcccCHHHHhhhccCCCCcccchhHhHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            34699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCChhHHHHHHHhcCCCccCCcchhHHhhhh-hccCCCC
Q 024780          200 SDDVCPNNLAEQINHALDCPLRRALPRVETRFFL-SVYPRVD  240 (262)
Q Consensus       200 ~~~~~~~~L~~~V~~aL~~P~h~~l~RleaR~yI-~~Y~~~~  240 (262)
                      +.++++  |+++|.|||++|+|||++|||||||| ++|++++
T Consensus       157 ~~~~~~--l~~~V~~aL~~P~h~~l~rleaR~yI~~~Ye~e~  196 (197)
T d5easa1         157 PHLKSP--LREQVTHALEQCLHKGVPRVETRFFISSIYDKEQ  196 (197)
T ss_dssp             GGCCTT--HHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGGCT
T ss_pred             hhcCcc--HHHHHHHHhCCCccCCCcHHHHHHHHHHHhcccC
Confidence            988888  99999999999999999999999999 5798875
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure