Citrus Sinensis ID: 024794

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MNSLTAKPCFIYQPPSSSVTVVSCRPKLFSSVRCPIKTKKNNNGRLALRIQAYDSSKNESNNNGSNDSKPPNGALPKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKRRRRCCACDEHIH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccccEEEEEEEcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHcccccccccccccccccccccEEcccccccccccEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHcccccHccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccHccc
Coil and Loop (DISEMBL)
mnsltakpcfiyqppsssvtvvscrpklfssvrcpiktkknnngrLALRIQAYdssknesnnngsndskppngalpkgrRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNmigtlppqfFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQvalpevldkkdtpdyapgtqknvsgevfrwnnvsgpekidAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTlepqnlkrrrrccacdehih
Flexible Loop (DISEMBL)
mnsltakpcfiyqppsssvtvvsCRPKlfssvrcpiktkknnngrlaLRIQAYDSsknesnnngsndskppngalPKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEvldkkdtpdyapgtqknvsgevfrwnnvsgpekiDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEylktlepqnlkrrrrccacdehih
Low Complexity Region (SEG)
MNSLTAKPCFIYQPPSSSVTVVSCRPKLFSSVRCPIKTKKNNNGRLALRIQAYdssknesnnngsndskPPNGALPKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKRRRRCCACDEHIH
Disordered region (IsUnstruct)
********CFIYQPPSSSVTVVSCRPKLFSSVRCPIKT********AL********************************DILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEV*****************SGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQL*********ELLEYLKTLE*******RRCCAC*****
Disordered Region (DISOPRED)
**********************************************************************************LLEYVKNVQPEF***********VVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLEL********************************************IDAKKYIEF***********************LEYLKTLE******************
Disordered Region (DISEMBL)
MNSLTAKPCFIYQPPSSSVTVVSCRPKLFSSVRCPIKTKKNNNGRLALRIQAYDS**************PPNGALPKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKRRRRCCACDEHIH
Disordered Region (DISPRO)
******KPC******SSSVTVVS***KLFSSVRCPIKTKKNNNGRLALRIQAYD************************RRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQ*************************EVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKRR***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSLTAKPCFIYQPPSSSVTVVSCRPKLFSSVRCPIKTKKNNNGRLALRIQAYDSSKNESNNNGSNDSKPPNGALPKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPExxxxxxxxxxxxxxxxxxxxxxxxxxxxGQNELLEYLKTLEPQNLKRRRRCCACDEHIH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
225459864	333	PREDICTED: uncharacterized protein LOC10	0.893	0.702	0.774	2e-93
358248580	345	uncharacterized protein LOC100815202 [Gl	0.866	0.657	0.775	7e-92
449452967	331	PREDICTED: uncharacterized protein LOC10	0.980	0.776	0.703	4e-89
255539126	348	conserved hypothetical protein [Ricinus	0.900	0.678	0.784	3e-88
356517424	341	PREDICTED: uncharacterized protein LOC10	0.820	0.630	0.792	1e-87
118487779	343	unknown [Populus trichocarpa]	0.862	0.658	0.804	5e-87
388491314	341	unknown [Lotus japonicus]	0.820	0.630	0.756	2e-85
224083247	308	predicted protein [Populus trichocarpa]	0.874	0.743	0.785	4e-85
326510833	330	predicted protein [Hordeum vulgare subsp	0.755	0.6	0.763	4e-83
224065695	340	predicted protein [Populus trichocarpa]	0.862	0.664	0.773	1e-82

>gi|225459864|ref|XP_002285932.1| PREDICTED: uncharacterized protein LOC100247161 [Vitis vinifera] gi|302141665|emb|CBI18868.3| unnamed protein product [Vitis vinifera]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 185/239 (77%), Positives = 203/239 (84%), Gaps = 5/239 (2%)

Query: 21  VVSCRPKLFSSVRCPIKTKKNNNGRLALRIQAYDSSKNESNNNGSNDSKPPNGAL-PKGR 79
           +V  R +L+SS+R P   K+ + GR ALR Q+++S  N S+N  +NDSKPPNG+  PK R
Sbjct: 24  LVLNRSQLYSSIRFP--RKRKSRGRFALRAQSFESPPNNSSN--ANDSKPPNGSFQPKSR 79

Query: 80  RDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQ 139
           RDILLEYVKNVQPEFMELFVKRAP+QVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQ
Sbjct: 80  RDILLEYVKNVQPEFMELFVKRAPQQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQ 139

Query: 140 LMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNV 199
           LMYSVMMTGYMFKNAQYRLELQQSLEQ ALPEV +KKD  DYAPGTQKNVSGEV RWNNV
Sbjct: 140 LMYSVMMTGYMFKNAQYRLELQQSLEQAALPEVQEKKDDQDYAPGTQKNVSGEVIRWNNV 199

Query: 200 SGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKRRRRCCACD 258
           SG EKIDA KYIE LEAE+EELNRQ+GRK+ NGQNELLEYLK+LEPQNLK        D
Sbjct: 200 SGLEKIDAVKYIELLEAEVEELNRQVGRKSANGQNELLEYLKSLEPQNLKDLTSSAGED 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248580|ref|NP_001240161.1| uncharacterized protein LOC100815202 [Glycine max] gi|255641632|gb|ACU21088.1| unknown [Glycine max]

 Score =  342 bits (878), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 180/232 (77%), Positives = 199/232 (85%), Gaps = 5/232 (2%)

Query: 30  SSVRCPIKTKKNNNGRLALRIQAYDSSKNESNNNGS--NDSKPPNGALPKGRRDILLEYV 87
           SS+  P   K  + GR  LR++AYDSS N+++N  S   DSKPPNG L K RR+ILLEYV
Sbjct: 41  SSISFPRNLK--HKGRFGLRVEAYDSSNNDTSNPASAGGDSKPPNGTLSKSRREILLEYV 98

Query: 88  KNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMT 147
           KNVQPEFMELFVKRAP+QVVDAMRQTVTNMIGTLPPQFFAVT+TTVAENLAQLMYS+MMT
Sbjct: 99  KNVQPEFMELFVKRAPQQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQLMYSIMMT 158

Query: 148 GYMFKNAQYRLELQQSLEQ-VALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKID 206
           GYMFKNAQYRLELQ+ LEQ VALP+V DKKD PDYAPGTQKNVSGEV RWNNVSGPEKID
Sbjct: 159 GYMFKNAQYRLELQEGLEQVVALPDVQDKKDVPDYAPGTQKNVSGEVIRWNNVSGPEKID 218

Query: 207 AKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKRRRRCCACD 258
           AKKYIE LEAEIEELNRQ+GR+++NGQNELLEYLK+LEP+NLK        D
Sbjct: 219 AKKYIELLEAEIEELNRQVGRQSSNGQNELLEYLKSLEPRNLKELTSSAGED 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452967|ref|XP_004144230.1| PREDICTED: uncharacterized protein LOC101214493 [Cucumis sativus] gi|449489317|ref|XP_004158277.1| PREDICTED: uncharacterized protein LOC101231379 [Cucumis sativus]

 Score =  333 bits (854), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 185/263 (70%), Positives = 210/263 (79%), Gaps = 6/263 (2%)

Query: 1   MNSLTAKPCF--IYQPPSSSVTVVSCRPKLFSSVRCPIKTKKNNNGRLALRIQAYDSSKN 58
           M+SLT KP F           +        FSS+  P+K +   NG ++ R++AYDSSK+
Sbjct: 1   MSSLTLKPFFPTTKFSFPPPSSSSFFAFPRFSSISFPLKPR---NG-VSFRLRAYDSSKS 56

Query: 59  ESNNNGSNDSKPPNGALPKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMI 118
           ++++  S DSKPPNG LPK RRDILLEYVKNVQPEFMELFV++AP+QVV+AMRQTVTNMI
Sbjct: 57  DNSDASSADSKPPNGTLPKTRRDILLEYVKNVQPEFMELFVQKAPQQVVEAMRQTVTNMI 116

Query: 119 GTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDT 178
           GTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQ RLELQQSLEQVALPE  D+KD 
Sbjct: 117 GTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQNRLELQQSLEQVALPEPKDEKDD 176

Query: 179 PDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLE 238
            +YA GTQKNV+GEV RWNNVSGPE IDAK+YIE LEAEIEELNRQ+GRK+TNGQNELLE
Sbjct: 177 SNYAAGTQKNVTGEVIRWNNVSGPESIDAKRYIELLEAEIEELNRQVGRKSTNGQNELLE 236

Query: 239 YLKTLEPQNLKRRRRCCACDEHI 261
           YLKTLEPQNLK        D  +
Sbjct: 237 YLKTLEPQNLKELTSSAGEDAVV 259

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539126|ref|XP_002510628.1| conserved hypothetical protein [Ricinus communis] gi|223551329|gb|EEF52815.1| conserved hypothetical protein [Ricinus communis]

 Score =  330 bits (847), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 189/241 (78%), Positives = 207/241 (85%), Gaps = 5/241 (2%)

Query: 18  SVTVVSCRPKLFSSVRCPIKTKKNNNGRLALRIQAYDSSKNESNNNGSNDSKPPNGALPK 77
           S  ++S RP    S+    K   +  GRL LRI+AYDSSKN+S++N S DSKPP+ +LPK
Sbjct: 38  STFILSGRP----SISFSRKRNTSIKGRLGLRIRAYDSSKNDSSSN-SADSKPPSSSLPK 92

Query: 78  GRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENL 137
            R+DILLEYVKNVQPEFMELFVKRAP+QVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENL
Sbjct: 93  TRKDILLEYVKNVQPEFMELFVKRAPQQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENL 152

Query: 138 AQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWN 197
           AQLMYSVMMTGYMFKNAQYR+ELQQSLEQVALPEV +KKD PDYAPGTQKNVSGEV RWN
Sbjct: 153 AQLMYSVMMTGYMFKNAQYRMELQQSLEQVALPEVEEKKDVPDYAPGTQKNVSGEVIRWN 212

Query: 198 NVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKRRRRCCAC 257
           NVSG EK+DAKKYIE LEAEIEELNRQ+GRK+TNGQNELLEYLK+LEPQNLK        
Sbjct: 213 NVSGAEKMDAKKYIELLEAEIEELNRQVGRKSTNGQNELLEYLKSLEPQNLKELTSSAGE 272

Query: 258 D 258
           D
Sbjct: 273 D 273

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517424|ref|XP_003527387.1| PREDICTED: uncharacterized protein LOC100783908 [Glycine max]

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 172/217 (79%), Positives = 190/217 (87%), Gaps = 2/217 (0%)

Query: 44  GRLALRIQAYDSSKNESNNNGS-NDSKPPNGALPKGRRDILLEYVKNVQPEFMELFVKRA 102
           GR  LR++AYDSS N+++N  S  DSKPPNG L K RR+ILLEYVKNVQPEFMELFVKRA
Sbjct: 50  GRFGLRVEAYDSSNNDNSNPASAGDSKPPNGTLSKSRREILLEYVKNVQPEFMELFVKRA 109

Query: 103 PEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQ 162
           P+QVVDAMRQTVTNMIGTLPPQFFAVT+TTVAENLAQLMYS+MMTGYMFKNAQYRLELQ+
Sbjct: 110 PQQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQLMYSIMMTGYMFKNAQYRLELQE 169

Query: 163 SLEQ-VALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEEL 221
           SLEQ VALP+V DKKD PD+A GTQKNVSGEV RWNNVSGPEKIDAKKYIE LEAEIEEL
Sbjct: 170 SLEQVVALPDVQDKKDVPDFASGTQKNVSGEVIRWNNVSGPEKIDAKKYIELLEAEIEEL 229

Query: 222 NRQLGRKATNGQNELLEYLKTLEPQNLKRRRRCCACD 258
           + Q+GR+ +N QNELLEYLK+LEP+NLK        D
Sbjct: 230 SCQVGRQTSNAQNELLEYLKSLEPRNLKELTSTAGED 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487779|gb|ABK95713.1| unknown [Populus trichocarpa]

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 185/230 (80%), Positives = 203/230 (88%), Gaps = 4/230 (1%)

Query: 24  CRPKLFSSVRCPI-KTKKNNNGRLALRIQAYDSSKNESNNNGS-NDSKPPNGAL-PKGRR 80
            RP+L SSV  P  K K  NNGRL  R++AYDSSK++S++N    D+KPPNG++ PK RR
Sbjct: 30  TRPRLCSSVSFPRNKEKYCNNGRLGFRVKAYDSSKDDSSSNNKSGDAKPPNGSVQPKNRR 89

Query: 81  DILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQL 140
           +ILLEYVKNVQPEFMELFVKRAP QVVDAMRQTVTNMIGTLPPQFFAVT+TTVAENLAQL
Sbjct: 90  EILLEYVKNVQPEFMELFVKRAPPQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQL 149

Query: 141 MYSVMMTGYMFKNAQYRLELQQSLEQVALPEVL-DKKDTPDYAPGTQKNVSGEVFRWNNV 199
           MYSVMMTGYMFKNAQ+RLELQQSLEQVALP+   +KKD PDYAPGTQKNVSGEV RWNNV
Sbjct: 150 MYSVMMTGYMFKNAQHRLELQQSLEQVALPDAQEEKKDEPDYAPGTQKNVSGEVLRWNNV 209

Query: 200 SGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
           SGPE+IDAKKYIE LEAEIEELN Q+GRK  NGQNELLEYLK+LEPQNLK
Sbjct: 210 SGPERIDAKKYIELLEAEIEELNSQVGRKTANGQNELLEYLKSLEPQNLK 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491314|gb|AFK33723.1| unknown [Lotus japonicus]

 Score =  321 bits (823), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 165/218 (75%), Positives = 186/218 (85%), Gaps = 3/218 (1%)

Query: 41  NNNGRLALRIQAYDSSKNESNNNGSNDSKPPNGALPKGRRDILLEYVKNVQPEFMELFVK 100
           N  GR  LR++AYDSS N +   G ++SKPPNG L K RR+ILLEYVKNVQPEFME+FVK
Sbjct: 52  NRKGRSPLRVEAYDSSTNPA---GDSNSKPPNGTLSKSRREILLEYVKNVQPEFMEMFVK 108

Query: 101 RAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLEL 160
           RAP+QVVDAMRQTVTNMIGTLPPQFFAVT+TTVAEN AQLMYSVMMTGYMFKNAQYRLEL
Sbjct: 109 RAPQQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENPAQLMYSVMMTGYMFKNAQYRLEL 168

Query: 161 QQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEE 220
           Q+ LE VALP+V DKKD PDYA G ++NVSGEV RWN+VSGPE+IDAKKYIE LE EIEE
Sbjct: 169 QEGLEHVALPDVQDKKDKPDYALGHKRNVSGEVLRWNHVSGPERIDAKKYIELLEVEIEE 228

Query: 221 LNRQLGRKATNGQNELLEYLKTLEPQNLKRRRRCCACD 258
           LNRQ+GR+++N QNELLEYLK+LEP+NLK        D
Sbjct: 229 LNRQVGRQSSNAQNELLEYLKSLEPRNLKDLTSSAGED 266

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083247|ref|XP_002306971.1| predicted protein [Populus trichocarpa] gi|222856420|gb|EEE93967.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 183/233 (78%), Positives = 200/233 (85%), Gaps = 4/233 (1%)

Query: 30  SSVRCPI-KTKKNNNGRLALRIQAYDSSKNESNNNGS-NDSKPPNGAL-PKGRRDILLEY 86
           SSV  P  K K  NNGRL  R++AYDSSK++S++N    D+KPPNG++ PK RR+ILLEY
Sbjct: 1   SSVSFPRNKEKYCNNGRLGFRVKAYDSSKDDSSSNNKSGDAKPPNGSVQPKNRREILLEY 60

Query: 87  VKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMM 146
           VKNVQPEFMELFVKRAP QVVDAMRQTVTNMIGTLPPQFFAVT+TTVAENLAQLMYSVMM
Sbjct: 61  VKNVQPEFMELFVKRAPPQVVDAMRQTVTNMIGTLPPQFFAVTITTVAENLAQLMYSVMM 120

Query: 147 TGYMFKNAQYRLELQQSLEQVALPEVL-DKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKI 205
           TGYMFKNAQ+RLELQQSLEQVALP+   +KKD PDYAPGTQKNVSGEV RWNNVSGPE+I
Sbjct: 121 TGYMFKNAQHRLELQQSLEQVALPDAQEEKKDEPDYAPGTQKNVSGEVLRWNNVSGPERI 180

Query: 206 DAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLKRRRRCCACD 258
           DAKKYIE LEAEIEELN Q+GRK  NGQNELLEYLK+LEPQNLK        D
Sbjct: 181 DAKKYIELLEAEIEELNSQVGRKTANGQNELLEYLKSLEPQNLKDLTSSAGED 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326510833|dbj|BAJ91764.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  313 bits (803), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 152/199 (76%), Positives = 165/199 (82%)

Query: 60  SNNNGSNDSKPPNGALPKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIG 119
           +  NG N     N  LPK RRDILLEYVK VQPEFMELFVKRAP QVVDAMR TVTNMIG
Sbjct: 50  AGTNGVNGDAGANNNLPKNRRDILLEYVKGVQPEFMELFVKRAPTQVVDAMRHTVTNMIG 109

Query: 120 TLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTP 179
           TLPPQFFAVTVTTVAENLAQLMYSV+MTGYMF+NAQYRLELQQSLEQ+ALPE  ++KD+ 
Sbjct: 110 TLPPQFFAVTVTTVAENLAQLMYSVLMTGYMFRNAQYRLELQQSLEQIALPEPKEEKDSE 169

Query: 180 DYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEY 239
           DYAPGTQK VSGEV RWN  +GPEKIDA KYIE LEAEI+EL+RQ+ RK++ G NELLEY
Sbjct: 170 DYAPGTQKKVSGEVIRWNKTTGPEKIDAVKYIELLEAEIDELSRQVARKSSQGSNELLEY 229

Query: 240 LKTLEPQNLKRRRRCCACD 258
           LKTLEPQNLK        D
Sbjct: 230 LKTLEPQNLKELASSAGED 248

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065695|ref|XP_002301925.1| predicted protein [Populus trichocarpa] gi|222843651|gb|EEE81198.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 178/230 (77%), Positives = 198/230 (86%), Gaps = 4/230 (1%)

Query: 24  CRPKLFSSVRCPI-KTKKNNNGRLALRIQAYDSSKNESNNNGS--NDSKPPNGALPKGRR 80
            R +L SSV  P  K    +  R   R++AYDSSKN+S++N +   D+KPPNG +PK RR
Sbjct: 27  TRSRLCSSVCFPGNKGSYCSERRFGFRVKAYDSSKNDSSSNNNNSGDAKPPNGTMPKTRR 86

Query: 81  DILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQL 140
           +ILLEYVKNVQPEFMELFVKR+P+QVVDAMRQTV NMIGTLPPQFFAVTVTTVAENLAQL
Sbjct: 87  EILLEYVKNVQPEFMELFVKRSPQQVVDAMRQTVANMIGTLPPQFFAVTVTTVAENLAQL 146

Query: 141 MYSVMMTGYMFKNAQYRLELQQSLEQVALPEVL-DKKDTPDYAPGTQKNVSGEVFRWNNV 199
           MYSVMMTGYMFKNAQYRL+LQQSLEQVALP+   +KKD PDYAPGTQKNVSGEV RWNNV
Sbjct: 147 MYSVMMTGYMFKNAQYRLDLQQSLEQVALPDAQEEKKDEPDYAPGTQKNVSGEVIRWNNV 206

Query: 200 SGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEPQNLK 249
           SGPE+IDAKKYIE LEAEIEELN Q+GRK+ NGQNELLEYLK+LEP NLK
Sbjct: 207 SGPERIDAKKYIELLEAEIEELNSQVGRKSANGQNELLEYLKSLEPLNLK 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2026669	341	AT1G63610 "AT1G63610" [Arabido	0.935	0.718	0.670	2.9e-80
TAIR|locus:2060495	386	AT2G14910 [Arabidopsis thalian	0.599	0.406	0.290	1.3e-10
TAIR|locus:2147875	355	AT5G14970 "AT5G14970" [Arabido	0.549	0.405	0.272	2.2e-10
GENEDB_PFALCIPARUM|PFE1330c	796	PFE1330c "hypothetical protein	0.576	0.189	0.246	3.2e-06
UNIPROTKB|Q8I3J8	796	PFE1330c "Putative uncharacter	0.576	0.189	0.246	3.2e-06

TAIR|locus:2026669 AT1G63610 "AT1G63610" [Arabidopsis thaliana (taxid:3702)]

 Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
 Identities = 175/261 (67%), Positives = 197/261 (75%)

Query:     1 MNSLTAKPCFIYQPPSSSVT--VVSCRPKLF---SSVRCPIKT---KKNNNGRL-ALRIQ 51
             M SL+ +   +  PPS      + +  PKL    SSV  P+KT   K +  G L  LR++
Sbjct:     1 MCSLSMQFSLLQSPPSRPCPSFLANHEPKLSTTSSSVTFPLKTNTWKCSGTGNLLVLRVK 60

Query:    52 AYXXXXXXXXXXXXXXXXPPNGAL--PKGRRDILLEYVKNVQPEFMELFVKRAPEQVVDA 109
             AY                PPNG    PK RRDILLEYV+NV+PEFME+FVKRAP+ VV+A
Sbjct:    61 AYGSSSDSSADSST----PPNGTRQQPKSRRDILLEYVQNVKPEFMEMFVKRAPKHVVEA 116

Query:   110 MRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLELQQSLEQVAL 169
             MRQTVTNMIGTLPPQFFAVTVT+VAENLAQLM SV+MTGYMF+NAQYRLELQQSLEQVAL
Sbjct:   117 MRQTVTNMIGTLPPQFFAVTVTSVAENLAQLMMSVLMTGYMFRNAQYRLELQQSLEQVAL 176

Query:   170 PEVLDKKD-TPDYAPGTQKNVSGEVFRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRK 228
             PE  D+K    DYAPGTQKNVSGEV RWNNVSGPEKIDAKKYIE LEAEIEELNRQ+GRK
Sbjct:   177 PEPRDQKGGDEDYAPGTQKNVSGEVIRWNNVSGPEKIDAKKYIELLEAEIEELNRQVGRK 236

Query:   229 ATNGQNELLEYLKTLEPQNLK 249
             + N QNE+LEYLK+LEPQNLK
Sbjct:   237 SANQQNEILEYLKSLEPQNLK 257

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010207 "photosystem II assembly" evidence=RCA

TAIR|locus:2060495 AT2G14910 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 48/165 (29%), Positives = 92/165 (55%)

Query:    79 RRDILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLA 138
             ++ +L + ++ ++P  + L  K  P   +DAM++T++ M+G LP   F V + ++ E L+
Sbjct:    77 KKCVLSDLIQEIEPLDVSLIQKDVPVTTLDAMKRTISGMLGLLPSDRFQVHIESLWEPLS 136

Query:   139 QLMYSVMMTGYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDY-APGT---QKNVSGEV- 193
             +L+ S MMTGY  +NA+YRL L+++L+           +  +Y   GT   + +VS +  
Sbjct:   137 KLLVSSMMTGYTLRNAEYRLFLEKNLDMSGGGLDSHASENTEYDMEGTFPDEDHVSSKRD 196

Query:   194 FRWNNVSGPEKIDAKKYIEFLEAEIEELNRQLGRKATNGQNELLE 238
              R  N+S  E ID ++ +  + +E +E   +L  + ++ + EL E
Sbjct:   197 SRTQNLS--ETID-EEGLGRVSSEAQEYILRLQSQLSSVKKELQE 238

GO:0009507 "chloroplast" evidence=ISM

GO:0015996 "chlorophyll catabolic process" evidence=RCA

TAIR|locus:2147875 AT5G14970 "AT5G14970" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
 Identities = 42/154 (27%), Positives = 81/154 (52%)

Query:    82 ILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLM 141
             ++   V  +QP    +  K   +   D+M+QT+++M+G LP   F+V+VT   + L +L+
Sbjct:    79 VIANLVNRIQPLDTSVISKGLSDSAKDSMKQTISSMLGLLPSDQFSVSVTISEQPLYRLL 138

Query:   142 YSVMMTGYMFKNAQYRLELQQSLEQVALP--EVLDKKDTPDYAPGTQKNVSGE----VFR 195
              S ++TGY   NA+YR+ L+++ +    P  E  D+    +   G++K +S +    V  
Sbjct:   139 ISSIITGYTLWNAEYRVSLRRNFDIPIDPRKEEEDQSSKDNVRFGSEKGMSEDLGNCVEE 198

Query:   196 WNNVS----GPEKIDAKKYIEFLEAEIEELNRQL 225
             +  +S    G    +A  YI+ L++E+  +  +L
Sbjct:   199 FERLSPQVFGDLSPEALSYIQLLQSELSSMKEEL 232

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0015996 "chlorophyll catabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GENEDB_PFALCIPARUM|PFE1330c PFE1330c "hypothetical protein, conserved" [Plasmodium falciparum (taxid:5833)]

 Score = 136 (52.9 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 39/158 (24%), Positives = 75/158 (47%)

Query:    89 NVQP-EFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMT 147
             ++ P E +  F +   E+V +A++  + N+IG +       ++    E +   +  +++T
Sbjct:   462 SISPNELINRFFENTSERVKEAVKNIIFNIIGNIQKYTIETSILITYEKIYNFLLQIILT 521

Query:   148 GYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDA 207
             GYM KNA YRL L +SL       +L+KKD  D     Q++V+ +  + N     +  + 
Sbjct:   522 GYMIKNADYRLTLNESLYDQN--NILNKKDY-DQQEDEQEDVNKQKQQNNQYQEDDLFNL 578

Query:   208 KKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEP 245
             KK    L ++   +N  +  +  N + E+L     + P
Sbjct:   579 KKSFHTLFSD-NNINN-ISEEQLN-KGEMLNSKHIINP 613

GO:0020011 "apicoplast" evidence=RCA

UNIPROTKB|Q8I3J8 PFE1330c "Putative uncharacterized protein" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 136 (52.9 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 39/158 (24%), Positives = 75/158 (47%)

Query:    89 NVQP-EFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQLMYSVMMT 147
             ++ P E +  F +   E+V +A++  + N+IG +       ++    E +   +  +++T
Sbjct:   462 SISPNELINRFFENTSERVKEAVKNIIFNIIGNIQKYTIETSILITYEKIYNFLLQIILT 521

Query:   148 GYMFKNAQYRLELQQSLEQVALPEVLDKKDTPDYAPGTQKNVSGEVFRWNNVSGPEKIDA 207
             GYM KNA YRL L +SL       +L+KKD  D     Q++V+ +  + N     +  + 
Sbjct:   522 GYMIKNADYRLTLNESLYDQN--NILNKKDY-DQQEDEQEDVNKQKQQNNQYQEDDLFNL 578

Query:   208 KKYIEFLEAEIEELNRQLGRKATNGQNELLEYLKTLEP 245
             KK    L ++   +N  +  +  N + E+L     + P
Sbjct:   579 KKSFHTLFSD-NNINN-ISEEQLN-KGEMLNSKHIINP 613


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      262       246    0.0010  113 3  11 22  0.44    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  591 (63 KB)
  Total size of DFA:  172 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.31u 0.08s 23.39t   Elapsed:  00:00:05
  Total cpu time:  23.31u 0.08s 23.39t   Elapsed:  00:00:05
  Start:  Sat May 11 01:10:29 2013   End:  Sat May 11 01:10:34 2013

GO:0020011 "apicoplast" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
pfam05542	85	pfam05542, DUF760, Protein of unknown function (DU	7e-36

>gnl|CDD|203271 pfam05542, DUF760, Protein of unknown function (DUF760)

 Score =  122 bits (309), Expect = 7e-36
 Identities = 38/84 (45%), Positives = 60/84 (71%)

Query: 81  DILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTLPPQFFAVTVTTVAENLAQL 140
           ++LL+Y++++ PE +      A  +V++AMR+ V+ ++G+LP   F VT+ T  ENLAQL
Sbjct: 1   NVLLQYIQSLPPETLARLADSASPEVLEAMRRNVSGLLGSLPSDHFEVTIQTSRENLAQL 60

Query: 141 MYSVMMTGYMFKNAQYRLELQQSL 164
           + S MMTGY  +NA+ RLEL++SL
Sbjct: 61  LASSMMTGYFLRNAEQRLELERSL 84

This family contains several uncharacterized plant proteins. Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
PF05542	86	DUF760: Protein of unknown function (DUF760); Inte	100.0
PF05542	86	DUF760: Protein of unknown function (DUF760); Inte	96.08

>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins

Probab=100.00  E-value=2.3e-34  Score=222.73  Aligned_cols=85  Identities=44%  Similarity=0.733  Sum_probs=83.5

Q ss_pred             hHHHHHHHhcChhHHHHHhccCcHHHHHHHHHHHHHhhcCC-CCCCcceEEEecHHhHHHHHHHHHhHhHhhchhhhHHH
Q 024794           81 DILLEYVKNVQPEFMELFVKRAPEQVVDAMRQTVTNMIGTL-PPQFFAVTVTTVAENLAQLMYSVMMTGYMFKNAQYRLE  159 (262)
Q Consensus        81 N~Ll~YLqsl~Pe~is~lsk~aSpeV~eaM~~tV~gLLG~L-P~~~F~vtItTsrE~LArLL~S~MMTGYfLRNAE~Rl~  159 (262)
                      |.||+|||+++||.+++|++++||||+|+|+++|++|||.+ |+++|+++|+|+|++||+|++|+|||||||||||||++
T Consensus         1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~~~i~~s~~~La~L~~~~mm~GYfLr~~E~R~~   80 (86)
T PF05542_consen    1 NDLLQYIQSLKPERIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFNVTIQTSRENLAQLLAWSMMTGYFLRNAEQRLE   80 (86)
T ss_pred             ChHHHHHHHCCHHHHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCcceeEECHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHhhhh
Q 024794          160 LQQSLE  165 (262)
Q Consensus       160 Le~sL~  165 (262)
                      ||++|.
T Consensus        81 Le~sL~   86 (86)
T PF05542_consen   81 LERSLK   86 (86)
T ss_pred             HHHhcC
Confidence            999974

>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins

Probab=96.08  E-value=0.0011  Score=51.60  Aligned_cols=29  Identities=24%  Similarity=0.544  Sum_probs=25.2

Q ss_pred             chHHHHhhcCCccchhcccc--CcccccccC
Q 024794          234 NELLEYLKTLEPQNLKRRRR--CCACDEHIH  262 (262)
Q Consensus       234 NdLLdYLRSL~pe~v~eLs~--~~~~~e~i~  262 (262)
                      |+|++||++|+|+.+++|++  +|.|.|+|+
T Consensus         1 n~L~~yi~~l~pe~~~~l~~~~s~ev~e~m~   31 (86)
T PF05542_consen    1 NDLLQYIQSLKPERIQQLSEPASPEVLEAMK   31 (86)
T ss_pred             ChHHHHHHHCCHHHHHHhhccCCHHHHHHHH
Confidence            89999999999999999995  567777763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	80.04

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=80.04  E-value=1.6  Score=32.21  Aligned_cols=24  Identities=13%  Similarity=0.307  Sum_probs=20.8

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhhH
Q 024794          205 IDAKKYIEFLEAEIEELNRQLGRK  228 (262)
Q Consensus       205 ~dA~~YI~~Le~el~eL~~q~~~~  228 (262)
                      -.|.+||..|+.++.+|+.++.+.
T Consensus        53 ~~Ai~YI~~L~~~~~~L~~e~~~L   76 (80)
T 1hlo_A           53 DKATEYIQYMRRKNHTHQQDIDDL   76 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            359999999999999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	85.96

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.96  E-value=0.23  Score=33.51  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=20.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhh
Q 024794          205 IDAKKYIEFLEAEIEELNRQLGR  227 (262)
Q Consensus       205 ~dA~~YI~~Le~el~eL~~q~~~  227 (262)
                      -+|-+||..|+.++.+|+.+..+
T Consensus        29 ~~Ai~YI~~Lq~~~~~L~~e~~~   51 (61)
T d1uklc_          29 RKAIDYIKYLQQVNHKLRQENMV   51 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999988765