Citrus Sinensis ID: 024797

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVPFLY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHccccEEEEEEccHHHHHHHHHHHccccHHHHcccccccccEEEccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHccccccEEEEEEccHHHHHHHHHHHHcccccccEEEEEEccHHHcccccccccccEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHcccccccccccccHHHccHHHHHHHHHHHcHHHcHHHHcccHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEcccccccHHHcccccccccEEEEHEEEEEccccHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHcccccccccEEEEEEcccccccccccccccccEEEEEEEEcccc
Coil and Loop (DISEMBL)
mkrghrgspsssegppaqrfkqnpegdshfledeSTKVFARKVADHysrrtnqtleereaspiihLKKLNNWIKSVLVQLYARRGDVVLdlacgkggdlikwdkakIGYYVGidiaegsiedcrtryngdadhhqrrkkfsfparlicgdcyevhldkvladdapfdicscqfamhySWSTEARARRALANVSAllrpggtfigtmpdANVIIKKLREVEGLAIGNSVYWIRLDEefadkkfkssrpfgiqykfhlevpfly
Flexible Loop (DISEMBL)
mkrghrgspsssegppaqrfkqnpegdshfleDESTKVFARKVADhysrrtnqtleereaspiihlkklNNWIKSVLVQLYARRGDVVLDLAcgkggdlikwdkakIGYYVGIDIAEGSIEDCRTRYngdadhhqrrkkfsfpARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLrpggtfigtmpDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKkfkssrpfgiqykfhlevpfly
Low Complexity Region (SEG)
MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVPFLY
Disordered region (IsUnstruct)
*************************************************************PIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVPFL*
Disordered Region (DISOPRED)
******************************************VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVPFLY
Disordered Region (DISEMBL)
*************************GDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVPFLY
Disordered Region (DISPRO)
************************************KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVPFLY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVPFLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q9LHQ7	370	mRNA cap guanine-N7 methy	yes	no	0.980	0.694	0.863	1e-127
Q6Z9U7	369	mRNA cap guanine-N7 methy	yes	no	0.977	0.693	0.723	1e-105
O74880	360	mRNA cap guanine-N7 methy	yes	no	0.778	0.566	0.427	2e-42
Q1MTD3	400	mRNA cap guanine-N7 methy	yes	no	0.801	0.525	0.420	1e-40
P0CO64	700	mRNA cap guanine-N7 methy	yes	no	0.767	0.287	0.415	2e-38
P0CO65	700	mRNA cap guanine-N7 methy	N/A	no	0.767	0.287	0.415	2e-38
Q4R7K1	476	mRNA cap guanine-N7 methy	N/A	no	0.782	0.430	0.395	6e-37
Q6CKI0	426	mRNA cap guanine-N7 methy	yes	no	0.793	0.488	0.404	2e-36
O43148	476	mRNA cap guanine-N7 methy	yes	no	0.782	0.430	0.391	4e-36
Q6FML4	417	mRNA cap guanine-N7 methy	yes	no	0.786	0.494	0.396	5e-36

>sp|Q9LHQ7|MCES1_ARATH mRNA cap guanine-N7 methyltransferase 1 OS=Arabidopsis thaliana GN=At3g20650 PE=2 SV=1

 Score =  454 bits (1168), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/257 (86%), Positives = 235/257 (91%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG   SPSSS  PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct: 1   MKRGFSDSPSSSAPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYAR  D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct: 121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
           TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE EGL IGNSVYWIR  EE++ K
Sbjct: 181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLREAEGLEIGNSVYWIRFGEEYSQK 240

Query: 241 KFKSSRPFGIQYKFHLE 257
           KFKSS PFGI+Y FHLE
Sbjct: 241 KFKSSSPFGIEYVFHLE 257

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 5EC: 6

>sp|Q6Z9U7|MCES1_ORYSJ mRNA cap guanine-N7 methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Os08g0180000 PE=2 SV=1

 Score =  382 bits (980), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/257 (72%), Positives = 206/257 (80%), Gaps = 1/257 (0%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           M +  R  PSSS     +R      G          +  AR+VADHYS R+NQTLEERE 
Sbjct: 1   MNKRPRDEPSSSFASAPKRQYGAGGGGYGGHGYSEERSSARRVADHYSARSNQTLEEREN 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYA  GD VLDLACGKGGDLIKWDKAK+GYYVG+DIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYAHPGDCVLDLACGKGGDLIKWDKAKVGYYVGVDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           +DC TRYNGD D  QRRKKFSFPARLIC DCYE  LD+ L +DAPFDICSCQFA+HYSWS
Sbjct: 121 KDCMTRYNGDTDQ-QRRKKFSFPARLICADCYEARLDEHLYEDAPFDICSCQFALHYSWS 179

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
           TEARAR+ALANVSALLRPGG FIGTMPDANVIIK+LRE +G+  GN VYWI   EE+A+K
Sbjct: 180 TEARARQALANVSALLRPGGVFIGTMPDANVIIKRLRETDGMEFGNGVYWISFGEEYAEK 239

Query: 241 KFKSSRPFGIQYKFHLE 257
           KF +SRPFGI+YKFHLE
Sbjct: 240 KFPASRPFGIKYKFHLE 256

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|O74880|MCES_SCHPO mRNA cap guanine-N7 methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pcm1 PE=1 SV=2

 Score =  172 bits (436), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/222 (42%), Positives = 133/222 (59%), Gaps = 18/222 (8%)

Query: 43  VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGD----VVLDLACGKGGD 98
           V  HY+ R +   ++R+ SPII LK+ NNWIKSVL+Q +A        +VLD+ CGKGGD
Sbjct: 65  VRSHYNARPDLGYKKRQFSPIIQLKRFNNWIKSVLIQKFAPHASDYPILVLDMGCGKGGD 124

Query: 99  LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158
           LIKWDKA I  Y+GIDIAE S+   + RY        R    SF A    GDC+   +++
Sbjct: 125 LIKWDKAGIDGYIGIDIAEVSVNQAKKRY--------REMHASFDALFYAGDCFSSSINE 176

Query: 159 VLADDA-PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217
           +L  D   FD+ S QF MHY++ +E + R  L NVS  L  GG  IGT+P+++VI+K ++
Sbjct: 177 LLPPDQRKFDVVSLQFCMHYAFESEEKVRVLLGNVSKCLPRGGVMIGTIPNSDVIVKHIK 236

Query: 218 EVEG--LAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLE 257
            ++      GN +Y +R  E    + F+   P+GIQY F+LE
Sbjct: 237 MLKPGEKEWGNDIYKVRFPES-PPRSFRP--PYGIQYYFYLE 275

Responsible for methylating the 5'-cap structure of mRNAs.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q1MTD3|MCES_DANRE mRNA cap guanine-N7 methyltransferase OS=Danio rerio GN=rnmt PE=2 SV=1

 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/226 (42%), Positives = 124/226 (54%), Gaps = 16/226 (7%)

Query: 40  ARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQ------LYARRGDVVLDLAC 93
           ++KVA HY++     L ER  S I++++  NNW+KSVL+          RR   VLDL C
Sbjct: 70  SQKVATHYNKIKECGLAERNKSRIVYMRNFNNWLKSVLIAEILDKVRQKRREVTVLDLGC 129

Query: 94  GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153
           GKGGDL+KW K +I   V  DIA  SIE C+ RYN D          +F A  I  DC  
Sbjct: 130 GKGGDLLKWKKGRIDKLVCADIAAVSIEQCQQRYN-DVRRRGHPNDRTFSAEFITADCSR 188

Query: 154 VHLDKVLAD-DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI 212
             L + L D +  FD+CSCQF  HYS+ +E++A   L N    LRPGG FIGT PDA  +
Sbjct: 189 ELLSEKLQDPELQFDVCSCQFVYHYSFESESQADTMLRNACERLRPGGFFIGTTPDAYEL 248

Query: 213 IKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLE 257
           +K+L E +  + GN V+ +   +       K   P FG QY F LE
Sbjct: 249 VKRLEESDSNSFGNEVFSVTFQK-------KGEYPLFGCQYDFSLE 287

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|P0CO64|MCES_CRYNJ mRNA cap guanine-N7 methyltransferase OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=ABD1 PE=3 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 18/219 (8%)

Query: 43  VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRG-DVVLDLACGKGGDLIK 101
           VA+HY+ R    +E RE SPII LKK NNWIKSVL+  +A R    VLD+ CGKGGDL K
Sbjct: 411 VAEHYNSRPEVGVERREFSPIIGLKKFNNWIKSVLIGKFAYRPRGKVLDVGCGKGGDLNK 470

Query: 102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161
           W +A+I  YVG+D+A+ S++         AD ++R  K  F A     DC+   L  VL+
Sbjct: 471 WKQARIALYVGLDVADQSVQQA-------ADRYRRMPKPGFDAFFYAHDCFSNPLSDVLS 523

Query: 162 DDAP----FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217
            +      +D  + QF MHY++   A+AR  + NVS  LR GG FIGT+P+A ++++   
Sbjct: 524 PELQIKDLYDNVTMQFCMHYAFENAAKARMMIENVSRYLRRGGIFIGTIPNAELLLQLPD 583

Query: 218 EVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHL 256
             E L  GNS Y I    +F +++ K    +G  Y+F+L
Sbjct: 584 RDEELRFGNSCYSI----QFTERRHKGV--YGHDYRFYL 616

Responsible for methylating the 5'-cap structure of mRNAs.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|P0CO65|MCES_CRYNB mRNA cap guanine-N7 methyltransferase OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=ABD1 PE=3 SV=1

 Score =  159 bits (402), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/219 (41%), Positives = 128/219 (58%), Gaps = 18/219 (8%)

Query: 43  VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRG-DVVLDLACGKGGDLIK 101
           VA+HY+ R    +E RE SPII LKK NNWIKSVL+  +A R    VLD+ CGKGGDL K
Sbjct: 411 VAEHYNSRPEVGVERREFSPIIGLKKFNNWIKSVLIGKFAYRPRGKVLDVGCGKGGDLNK 470

Query: 102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161
           W +A+I  YVG+D+A+ S++         AD ++R  K  F A     DC+   L  VL+
Sbjct: 471 WKQARIALYVGLDVADQSVQQA-------ADRYRRMPKPGFDAFFYAHDCFSNPLSDVLS 523

Query: 162 DDAP----FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217
            +      +D  + QF MHY++   A+AR  + NVS  LR GG FIGT+P+A ++++   
Sbjct: 524 PELQIKDLYDNVTMQFCMHYAFENAAKARMMIENVSRYLRRGGIFIGTIPNAELLLQLPD 583

Query: 218 EVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHL 256
             E L  GNS Y I    +F +++ K    +G  Y+F+L
Sbjct: 584 RDEELRFGNSCYSI----QFTERRHKGV--YGHDYRFYL 616

Responsible for methylating the 5'-cap structure of mRNAs.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q4R7K1|MCES_MACFA mRNA cap guanine-N7 methyltransferase OS=Macaca fascicularis GN=RNMT PE=2 SV=1

 Score =  154 bits (389), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 89/225 (39%), Positives = 122/225 (54%), Gaps = 20/225 (8%)

Query: 43  VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY-------ARRGDVVLDLACGK 95
           VA HY+      LE+R  S I +L+  NNW+KSVL+  +        +R   VLDL CGK
Sbjct: 149 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGK 208

Query: 96  GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCY-E 153
           GGDL+KW K +I   V  DIA+ SI+ C+ RY    D   RR  ++ F A  I  DC  E
Sbjct: 209 GGDLLKWKKGRINKLVCTDIADVSIKQCQQRYE---DMKNRRDSEYIFSAEFITADCSKE 265

Query: 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213
           + ++K       FDICSCQF  HYS+ +  +A   L N    L PGG FIGT P++  +I
Sbjct: 266 LLIEKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELI 325

Query: 214 KKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLE 257
           ++L   E  + GN +Y ++  +       K   P FG +Y F+LE
Sbjct: 326 RRLEASETESFGNEIYTVKFQK-------KGDYPLFGCKYDFNLE 363

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q6CKI0|MCES_KLULA mRNA cap guanine-N7 methyltransferase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ABD1 PE=3 SV=1

 Score =  152 bits (385), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/225 (40%), Positives = 123/225 (54%), Gaps = 17/225 (7%)

Query: 43  VADHYSRRTNQTLE-EREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
           V  HY+ RT  + +  R  SPII L+  NN IK +L+  + R GDVVL+LACGKGGDL K
Sbjct: 119 VRQHYNERTFLSKKHNRNYSPIIKLRNFNNAIKYILIDKFTRAGDVVLELACGKGGDLRK 178

Query: 102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161
           +  A I  ++GIDI+  SI +   RY+         K   +   LI GDC+   L   + 
Sbjct: 179 YGAAGISQFIGIDISNASITEALKRYHS-------MKNLEYQVILITGDCFGESLGVAVE 231

Query: 162 D----DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217
                  P DI SCQFA+HY++ TE +ARR L NV   L+ GG F GT+PD+  I  K+ 
Sbjct: 232 SFPECRFPCDIVSCQFALHYAFETEEKARRMLLNVVKSLKIGGYFFGTIPDSEFIRYKMN 291

Query: 218 E----VEGLAIGNSVYWIRL-DEEFADKKFKSSRPFGIQYKFHLE 257
           +    VE  + GNS+Y +   + E+     +   PFG  Y F LE
Sbjct: 292 KIPESVEKPSWGNSIYKVTFSNNEYQKNGNEFPSPFGQMYTFWLE 336

Responsible for methylating the 5'-cap structure of mRNAs.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|O43148|MCES_HUMAN mRNA cap guanine-N7 methyltransferase OS=Homo sapiens GN=RNMT PE=1 SV=1

 Score =  151 bits (382), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 121/225 (53%), Gaps = 20/225 (8%)

Query: 43  VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY-------ARRGDVVLDLACGK 95
           VA HY+      LE+R  S I +L+  NNW+KSVL+  +        +R   VLDL CGK
Sbjct: 149 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGK 208

Query: 96  GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCY-E 153
           GGDL+KW K +I   V  DIA+ S++ C+ RY    D   RR  ++ F A  I  D   E
Sbjct: 209 GGDLLKWKKGRINKLVCTDIADVSVKQCQQRYE---DMKNRRDSEYIFSAEFITADSSKE 265

Query: 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213
           + +DK       FDICSCQF  HYS+ +  +A   L N    L PGG FIGT P++  +I
Sbjct: 266 LLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELI 325

Query: 214 KKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLE 257
           ++L   E  + GN +Y ++  +       K   P FG +Y F+LE
Sbjct: 326 RRLEASETESFGNEIYTVKFQK-------KGDYPLFGCKYDFNLE 363

mRNA-capping methyltransferase that methylates the N7 position of the added guanosine to the 5'-cap structure of mRNAs. Binds RNA containing 5'-terminal GpppC.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

>sp|Q6FML4|MCES_CANGA mRNA cap guanine-N7 methyltransferase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=ABD1 PE=3 SV=1

 Score =  151 bits (381), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 90/227 (39%), Positives = 127/227 (55%), Gaps = 21/227 (9%)

Query: 43  VADHYSRRT---NQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDL 99
           V +HY+ RT   N+T  +R  SPII L+  NN IK +L+  +   GDVVL+L CGKGGDL
Sbjct: 110 VREHYNERTYIANRT--KRNQSPIIKLRNFNNAIKFMLIDKFTHTGDVVLELGCGKGGDL 167

Query: 100 IKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV 159
            K+  A I  ++GIDI+  SI++   RY       Q  K   F A LI GDC+   L   
Sbjct: 168 RKYGAAGISQFIGIDISNASIQEAHKRY-------QSMKNLDFQAILITGDCFGESLGVA 220

Query: 160 LAD----DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215
           +        P D+ S QF +HY++ TE +ARRAL NVS  L+ GG F GT+PD+  +  K
Sbjct: 221 VEPFPECRFPCDVVSTQFCLHYAFETEEKARRALLNVSKSLKVGGRFFGTIPDSEFLRYK 280

Query: 216 L----REVEGLAIGNSVYWIRL-DEEFADKKFKSSRPFGIQYKFHLE 257
           L    ++V+    GN +Y I+  + ++ +   +   P+G  Y F LE
Sbjct: 281 LNKIGKDVQEPKWGNQIYSIKFSNNDYHENGNEFPSPYGQMYTFWLE 327

Responsible for methylating the 5'-cap structure of mRNAs.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 5

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
225461191	372	PREDICTED: mRNA cap guanine-N7 methyltra	0.980	0.690	0.891	1e-134
356517255	372	PREDICTED: mRNA cap guanine-N7 methyltra	0.980	0.690	0.863	1e-132
356526183	371	PREDICTED: mRNA cap guanine-N7 methyltra	0.980	0.692	0.856	1e-131
449468524	370	PREDICTED: mRNA cap guanine-N7 methyltra	0.977	0.691	0.852	1e-127
42565060	370	mRNA cap guanine-N7 methyltransferase 1	0.980	0.694	0.863	1e-125
357511455	372	mRNA cap guanine-N7 methyltransferase [M	0.980	0.690	0.840	1e-125
255574992	367	mRNA (guanine-7-)methyltransferase, puta	0.961	0.686	0.841	1e-125
297835020	370	mRNA capping enzyme family protein [Arab	0.980	0.694	0.863	1e-125
42572501	369	mRNA cap guanine-N7 methyltransferase 1	0.977	0.693	0.859	1e-123
224117368	369	predicted protein [Populus trichocarpa]	0.961	0.682	0.799	1e-119

>gi|225461191|ref|XP_002283163.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1 [Vitis vinifera] gi|302143175|emb|CBI20470.3| unnamed protein product [Vitis vinifera]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 229/257 (89%), Positives = 240/257 (93%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG+  SPS+S GPP  RF+ NPEGDS FLEDESTK FARKVADHYS RTNQTLEEREA
Sbjct: 1   MKRGYTESPSTSLGPPHSRFRHNPEGDSQFLEDESTKNFARKVADHYSARTNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYARRGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYARRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           EDCRTRYNGDADHHQRRKKF+FPARLICGDC+EV LD+VL DDAPFDICSCQFAMHYSWS
Sbjct: 121 EDCRTRYNGDADHHQRRKKFTFPARLICGDCFEVPLDRVLEDDAPFDICSCQFAMHYSWS 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
           TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE EGLAIGNSVYWIR DE+F+ K
Sbjct: 181 TEARARRALANVSALLRPGGIFIGTMPDANVIIKKLREAEGLAIGNSVYWIRFDEDFSKK 240

Query: 241 KFKSSRPFGIQYKFHLE 257
           KFK+S PFGI+YKFHLE
Sbjct: 241 KFKTSSPFGIKYKFHLE 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517255|ref|XP_003527304.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1-like [Glycine max]

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 222/257 (86%), Positives = 239/257 (92%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG++ SPSSS GPP  R + +P+G +HF+EDESTK+FARKVADHYS R+NQTLEEREA
Sbjct: 1   MKRGYQESPSSSLGPPHSRARHDPQGGAHFVEDESTKIFARKVADHYSARSNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYARRGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYARRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           +DCRTRYNGDADHHQRRKKF+FPARLICGDCYEV LDKVLADDAPFDICSCQFA+HYSWS
Sbjct: 121 KDCRTRYNGDADHHQRRKKFTFPARLICGDCYEVRLDKVLADDAPFDICSCQFALHYSWS 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
           TEARAR+ALANVSALLRPGG FIGTMPDANVIIKKLRE EGL  GN VYW+R DEEF+DK
Sbjct: 181 TEARARQALANVSALLRPGGIFIGTMPDANVIIKKLREAEGLTFGNRVYWVRFDEEFSDK 240

Query: 241 KFKSSRPFGIQYKFHLE 257
           KFKSS PFGI+Y FHLE
Sbjct: 241 KFKSSSPFGIKYTFHLE 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526183|ref|XP_003531699.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1-like [Glycine max]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 220/257 (85%), Positives = 238/257 (92%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG++ S S+S GPP  R + +P+G +HFLEDESTK+FARKVADHYS R+NQTLEEREA
Sbjct: 1   MKRGYQESHSTSLGPPQSRARHDPQGSAHFLEDESTKIFARKVADHYSARSNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYARRGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYARRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           +DCRTRYNGDADHHQRRKKF+FPARLICGDCYEV LDKVLADDAPFD+CSCQFA+HYSWS
Sbjct: 121 KDCRTRYNGDADHHQRRKKFTFPARLICGDCYEVRLDKVLADDAPFDLCSCQFALHYSWS 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
           TE RAR+ALANVSALLRPGG FIGTMPDANVIIKKLRE EGL  GNSVYW+R DEEF+DK
Sbjct: 181 TEVRARQALANVSALLRPGGIFIGTMPDANVIIKKLREAEGLTFGNSVYWVRFDEEFSDK 240

Query: 241 KFKSSRPFGIQYKFHLE 257
           KFKSS PFGI+Y FHLE
Sbjct: 241 KFKSSSPFGIKYTFHLE 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468524|ref|XP_004151971.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1-like [Cucumis sativus] gi|449496924|ref|XP_004160264.1| PREDICTED: mRNA cap guanine-N7 methyltransferase 1-like [Cucumis sativus]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/257 (85%), Positives = 233/257 (90%), Gaps = 1/257 (0%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG+  SPS+S GPP  R K NPEGD+ F EDESTK+FARKVA+HYS RTNQTLEEREA
Sbjct: 1   MKRGYSESPSASLGPPQSRPKYNPEGDAEF-EDESTKIFARKVAEHYSARTNQTLEEREA 59

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           S IIHLKKLNNWIKSVLVQLYARRGD VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 60  SVIIHLKKLNNWIKSVLVQLYARRGDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 119

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           EDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  LD VLADDAPFDICSCQFA+HYSWS
Sbjct: 120 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEARLDHVLADDAPFDICSCQFALHYSWS 179

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
           TEARARRALAN+SALLRPGG  IGTMPDANVI+KKLRE +GL  GNSVYWIR DEE+A+K
Sbjct: 180 TEARARRALANISALLRPGGVLIGTMPDANVIVKKLREAQGLMFGNSVYWIRFDEEYAEK 239

Query: 241 KFKSSRPFGIQYKFHLE 257
           KF +S PFGI+Y FHLE
Sbjct: 240 KFNASSPFGIKYLFHLE 256

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565060|ref|NP_188701.2| mRNA cap guanine-N7 methyltransferase 1 [Arabidopsis thaliana] gi|75273308|sp|Q9LHQ7.1|MCES1_ARATH RecName: Full=mRNA cap guanine-N7 methyltransferase 1; AltName: Full=mRNA (guanine-N(7)-)-methyltransferase 1; AltName: Full=mRNA cap methyltransferase 1 gi|9294344|dbj|BAB02241.1| mRNA cap methyltransferase-like protein [Arabidopsis thaliana] gi|28973781|gb|AAO64206.1| unknown protein [Arabidopsis thaliana] gi|29824183|gb|AAP04052.1| unknown protein [Arabidopsis thaliana] gi|110736712|dbj|BAF00319.1| hypothetical protein [Arabidopsis thaliana] gi|332642886|gb|AEE76407.1| mRNA cap guanine-N7 methyltransferase 1 [Arabidopsis thaliana]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/257 (86%), Positives = 235/257 (91%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG   SPSSS  PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct: 1   MKRGFSDSPSSSAPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYAR  D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct: 121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
           TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE EGL IGNSVYWIR  EE++ K
Sbjct: 181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLREAEGLEIGNSVYWIRFGEEYSQK 240

Query: 241 KFKSSRPFGIQYKFHLE 257
           KFKSS PFGI+Y FHLE
Sbjct: 241 KFKSSSPFGIEYVFHLE 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511455|ref|XP_003626016.1| mRNA cap guanine-N7 methyltransferase [Medicago truncatula] gi|355501031|gb|AES82234.1| mRNA cap guanine-N7 methyltransferase [Medicago truncatula]

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/257 (84%), Positives = 233/257 (90%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG+R SPSSS G P  + + N +GD +FLEDESTK +ARKVADHYS R+NQTLEEREA
Sbjct: 1   MKRGYRESPSSSFGQPHSKPRHNSQGDENFLEDESTKNYARKVADHYSARSNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYA RGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYACRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           +DCRTRYNGDADHHQRRKKF+FPARL+CGDCYEV LDKVLA+DAPFDICSCQFA+HYSWS
Sbjct: 121 KDCRTRYNGDADHHQRRKKFTFPARLLCGDCYEVRLDKVLAEDAPFDICSCQFALHYSWS 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
           TEARAR+ALANVSALLRPGG FIGTMPDANVI KKLRE EGL  GNSVY +  DEEF+DK
Sbjct: 181 TEARARQALANVSALLRPGGVFIGTMPDANVITKKLREAEGLTFGNSVYSVWFDEEFSDK 240

Query: 241 KFKSSRPFGIQYKFHLE 257
           KFKSS PFGI+Y FHLE
Sbjct: 241 KFKSSHPFGIKYTFHLE 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574992|ref|XP_002528402.1| mRNA (guanine-7-)methyltransferase, putative [Ricinus communis] gi|223532190|gb|EEF33995.1| mRNA (guanine-7-)methyltransferase, putative [Ricinus communis]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 217/258 (84%), Positives = 233/258 (90%), Gaps = 6/258 (2%)

Query: 1   MKRGHRGSPSSS-EGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEERE 59
           MKRG+  SPS+S +GPP  R +  P+G++HF ED     F +KVADHYS RTNQTLEERE
Sbjct: 1   MKRGYSESPSTSGDGPPKSRIRYTPQGEAHFSED-----FVQKVADHYSARTNQTLEERE 55

Query: 60  ASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGS 119
           ASPIIHLKKLNNWIKSVLVQLYARRGD VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGS
Sbjct: 56  ASPIIHLKKLNNWIKSVLVQLYARRGDAVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGS 115

Query: 120 IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW 179
           IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV LDKVLADDAPFDICSCQFA+HYSW
Sbjct: 116 IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVRLDKVLADDAPFDICSCQFALHYSW 175

Query: 180 STEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFAD 239
           STEARARRALANVSALLRPGGTFIGTMPDANVI+KKLRE +G   GNSVYWIR DEE+++
Sbjct: 176 STEARARRALANVSALLRPGGTFIGTMPDANVIVKKLREAKGPVFGNSVYWIRFDEEYSE 235

Query: 240 KKFKSSRPFGIQYKFHLE 257
           KKFK S P+GI+YKFHLE
Sbjct: 236 KKFKYSAPYGIKYKFHLE 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835020|ref|XP_002885392.1| mRNA capping enzyme family protein [Arabidopsis lyrata subsp. lyrata] gi|297331232|gb|EFH61651.1| mRNA capping enzyme family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  453 bits (1165), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 222/257 (86%), Positives = 235/257 (91%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG   SPSSS  PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct: 1   MKRGFSESPSSSGPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYAR  D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct: 121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
           TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE EGL IGNSVYWIR  EE++ K
Sbjct: 181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLREAEGLEIGNSVYWIRFGEEYSQK 240

Query: 241 KFKSSRPFGIQYKFHLE 257
           KFKSS PFGI+Y FHLE
Sbjct: 241 KFKSSSPFGIEYVFHLE 257

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572501|ref|NP_974346.1| mRNA cap guanine-N7 methyltransferase 1 [Arabidopsis thaliana] gi|332642887|gb|AEE76408.1| mRNA cap guanine-N7 methyltransferase 1 [Arabidopsis thaliana]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 221/257 (85%), Positives = 235/257 (91%), Gaps = 1/257 (0%)

Query: 1   MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
           MKRG   SPSSS  PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct: 1   MKRGFSDSPSSSAPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           SPIIHLKKLNNWIKSVL+QLYAR  D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct: 61  SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
           EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct: 121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
           TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE EGL IGNSVYWIR  EE++ +
Sbjct: 181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLREAEGLEIGNSVYWIRFGEEYS-Q 239

Query: 241 KFKSSRPFGIQYKFHLE 257
           KFKSS PFGI+Y FHLE
Sbjct: 240 KFKSSSPFGIEYVFHLE 256

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117368|ref|XP_002317555.1| predicted protein [Populus trichocarpa] gi|222860620|gb|EEE98167.1| predicted protein [Populus trichocarpa]

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 207/259 (79%), Positives = 225/259 (86%), Gaps = 7/259 (2%)

Query: 1   MKRGHRGSPS--SSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEER 58
           MKRG+  SPS  S+ GPP  R K  PEG++ F  D     F ++VADHYS RTNQTLEER
Sbjct: 1   MKRGYPTSPSNSSASGPPKSRLKYTPEGEADFSND-----FVQRVADHYSARTNQTLEER 55

Query: 59  EASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118
           EASPIIHLKKLNNWIKSVLVQ Y  +GD VLDLACGKGGDLIKWDKAK GYYVGIDIAEG
Sbjct: 56  EASPIIHLKKLNNWIKSVLVQQYTGKGDAVLDLACGKGGDLIKWDKAKAGYYVGIDIAEG 115

Query: 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS 178
           S+EDCRTRYNGDADHHQRRKKF+FPARLICGDC+E+ LD+VL DDAPFDI SCQFA+HYS
Sbjct: 116 SMEDCRTRYNGDADHHQRRKKFTFPARLICGDCFELQLDEVLVDDAPFDIVSCQFALHYS 175

Query: 179 WSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFA 238
           WSTEARARRALAN+SALLRPGGTFIGTMPDANVIIKKLRE EGLA GNSVYW+R DEEF+
Sbjct: 176 WSTEARARRALANISALLRPGGTFIGTMPDANVIIKKLREAEGLAFGNSVYWVRFDEEFS 235

Query: 239 DKKFKSSRPFGIQYKFHLE 257
            KKF+SS PFGI+Y FHLE
Sbjct: 236 QKKFRSSSPFGIKYYFHLE 254

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2083420	370	AT3G20650 "AT3G20650" [Arabido	0.980	0.694	0.863	1.1e-121
POMBASE|SPCC330.10	360	pcm1 "P-TEFb-cap methyltransfe	0.778	0.566	0.432	9.6e-41
ZFIN|ZDB-GENE-041008-25	400	rnmt "RNA (guanine-7-) methylt	0.923	0.605	0.394	4.2e-40
UNIPROTKB|Q4R7K1	476	RNMT "mRNA cap guanine-N7 meth	0.782	0.430	0.395	5.1e-37
UNIPROTKB|E1BYM1	415	RNMT "mRNA cap guanine-N7 meth	0.790	0.498	0.403	6.5e-35
UNIPROTKB|F1MHQ5	477	RNMT "mRNA cap guanine-N7 meth	0.790	0.433	0.392	1.1e-34
UNIPROTKB|E2R4R3	478	RNMT "mRNA cap guanine-N7 meth	0.790	0.433	0.383	1.1e-34
SGD|S000000440	436	ABD1 "Methyltransferase" [Sacc	0.793	0.477	0.395	1.7e-34
MGI|MGI:1915147	465	Rnmt "RNA (guanine-7-) methylt	0.782	0.440	0.391	5.8e-34
RGD|1309242	461	Rnmt "RNA (guanine-7-) methylt	0.935	0.531	0.358	7.4e-34

TAIR|locus:2083420 AT3G20650 "AT3G20650" [Arabidopsis thaliana (taxid:3702)]

 Score = 1197 (426.4 bits), Expect = 1.1e-121, P = 1.1e-121
 Identities = 222/257 (86%), Positives = 235/257 (91%)

Query:     1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA 60
             MKRG   SPSSS  PP+ RFK NPEGDS FLEDE+TK FARKVADHYSRRTNQTLEEREA
Sbjct:     1 MKRGFSDSPSSSAPPPSSRFKSNPEGDSQFLEDETTKNFARKVADHYSRRTNQTLEEREA 60

Query:    61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
             SPIIHLKKLNNWIKSVL+QLYAR  D VLDLACGKGGDLIKWDKA+IGYYVGIDIAEGSI
Sbjct:    61 SPIIHLKKLNNWIKSVLIQLYARPDDAVLDLACGKGGDLIKWDKARIGYYVGIDIAEGSI 120

Query:   121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
             EDCRTRYNGDADHHQRRKKFSFP+RL+CGDC+EV LDK+L +DAPFDICSCQFAMHYSW+
Sbjct:   121 EDCRTRYNGDADHHQRRKKFSFPSRLLCGDCFEVELDKILEEDAPFDICSCQFAMHYSWT 180

Query:   181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
             TEARARRALANVSALLRPGG FIGTMPDANVIIKKLRE EGL IGNSVYWIR  EE++ K
Sbjct:   181 TEARARRALANVSALLRPGGVFIGTMPDANVIIKKLREAEGLEIGNSVYWIRFGEEYSQK 240

Query:   241 KFKSSRPFGIQYKFHLE 257
             KFKSS PFGI+Y FHLE
Sbjct:   241 KFKSSSPFGIEYVFHLE 257

GO:0003824 "catalytic activity" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;ISS

GO:0015824 "proline transport" evidence=RCA

POMBASE|SPCC330.10 pcm1 "P-TEFb-cap methyltransferase Pcm1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 96/222 (43%), Positives = 134/222 (60%)

Query:    43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGD----VVLDLACGKGGD 98
             V  HY+ R +   ++R+ SPII LK+ NNWIKSVL+Q +A        +VLD+ CGKGGD
Sbjct:    65 VRSHYNARPDLGYKKRQFSPIIQLKRFNNWIKSVLIQKFAPHASDYPILVLDMGCGKGGD 124

Query:    99 LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK 158
             LIKWDKA I  Y+GIDIAE S+   + RY        R    SF A    GDC+   +++
Sbjct:   125 LIKWDKAGIDGYIGIDIAEVSVNQAKKRY--------REMHASFDALFYAGDCFSSSINE 176

Query:   159 VLA-DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR 217
             +L  D   FD+ S QF MHY++ +E + R  L NVS  L  GG  IGT+P+++VI+K ++
Sbjct:   177 LLPPDQRKFDVVSLQFCMHYAFESEEKVRVLLGNVSKCLPRGGVMIGTIPNSDVIVKHIK 236

Query:   218 EVE-G-LAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLE 257
              ++ G    GN +Y +R  E    + F+   P+GIQY F+LE
Sbjct:   237 MLKPGEKEWGNDIYKVRFPES-PPRSFRP--PYGIQYYFYLE 275

GO:0001510 "RNA methylation" evidence=IC

GO:0003723 "RNA binding" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IGI

GO:0005634 "nucleus" evidence=IGI;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006370 "7-methylguanosine mRNA capping" evidence=IGI

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=ISS

GO:0032153 "cell division site" evidence=IDA

GO:0070693 "P-TEFb-cap methyltransferase complex" evidence=IDA

ZFIN|ZDB-GENE-041008-25 rnmt "RNA (guanine-7-) methyltransferase" [Danio rerio (taxid:7955)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 103/261 (39%), Positives = 140/261 (53%)

Query:     8 SPSSSEGPPAQRFKQNPEGDSHFLEDE---STKVFARKVADHYSRRTNQTLEEREASPII 64
             S SSS     +R   + E D H    +      + ++KVA HY++     L ER  S I+
Sbjct:    35 STSSSSSSVKRRRDGDEEDDDHSPSKKLVTEDSLHSQKVATHYNKIKECGLAERNKSRIV 94

Query:    65 HLKKLNNWIKSVLV-----QLYARRGDV-VLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118
             +++  NNW+KSVL+     ++  +R +V VLDL CGKGGDL+KW K +I   V  DIA  
Sbjct:    95 YMRNFNNWLKSVLIAEILDKVRQKRREVTVLDLGCGKGGDLLKWKKGRIDKLVCADIAAV 154

Query:   119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD-DAPFDICSCQFAMHY 177
             SIE C+ RYN D          +F A  I  DC    L + L D +  FD+CSCQF  HY
Sbjct:   155 SIEQCQQRYN-DVRRRGHPNDRTFSAEFITADCSRELLSEKLQDPELQFDVCSCQFVYHY 213

Query:   178 SWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEF 237
             S+ +E++A   L N    LRPGG FIGT PDA  ++K+L E +  + GN V+ +   +  
Sbjct:   214 SFESESQADTMLRNACERLRPGGFFIGTTPDAYELVKRLEESDSNSFGNEVFSVTFQK-- 271

Query:   238 ADKKFKSSRP-FGIQYKFHLE 257
                  K   P FG QY F LE
Sbjct:   272 -----KGEYPLFGCQYDFSLE 287

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0006397 "mRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q4R7K1 RNMT "mRNA cap guanine-N7 methyltransferase" [Macaca fascicularis (taxid:9541)]

 Score = 374 (136.7 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
 Identities = 89/225 (39%), Positives = 124/225 (55%)

Query:    43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYA------RRGDV-VLDLACGK 95
             VA HY+      LE+R  S I +L+  NNW+KSVL+  +       ++ D+ VLDL CGK
Sbjct:   149 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGK 208

Query:    96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCY-E 153
             GGDL+KW K +I   V  DIA+ SI+ C+ RY    D   RR  ++ F A  I  DC  E
Sbjct:   209 GGDLLKWKKGRINKLVCTDIADVSIKQCQQRYE---DMKNRRDSEYIFSAEFITADCSKE 265

Query:   154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213
             + ++K       FDICSCQF  HYS+ +  +A   L N    L PGG FIGT P++  +I
Sbjct:   266 LLIEKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELI 325

Query:   214 KKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLE 257
             ++L   E  + GN +Y ++  +       K   P FG +Y F+LE
Sbjct:   326 RRLEASETESFGNEIYTVKFQK-------KGDYPLFGCKYDFNLE 363

GO:0003723 "RNA binding" evidence=ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005845 "mRNA cap binding complex" evidence=ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

UNIPROTKB|E1BYM1 RNMT "mRNA cap guanine-N7 methyltransferase" [Gallus gallus (taxid:9031)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 90/223 (40%), Positives = 122/223 (54%)

Query:    43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLV-----QLYARRGDV-VLDLACGKG 96
             VA HY+      LE+R  S I +L+  NNW KSVL+     ++  ++ D+ VLDL CGKG
Sbjct:    88 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWTKSVLIGEFIDRVRQKKSDITVLDLGCGKG 147

Query:    97 GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL 156
             GDL+KW K +I   V  DIA+ S++ C+ RY  D     R  +  F A  I  D  +  L
Sbjct:   148 GDLLKWRKGRIKKLVCTDIADISVQQCKQRYE-DMKARCRYNERIFDAEFIQADSTKDLL 206

Query:   157 DKVLAD-DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215
                 +D D  FDICSCQF  HYS+ T  +A   L N    L PGG FIGT P++  ++K+
Sbjct:   207 SSKYSDPDTRFDICSCQFVYHYSFETYEQADMMLKNACGNLSPGGYFIGTTPNSFELVKR 266

Query:   216 LREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLE 257
             L   E  + GN VY ++ ++       K   P FG +Y FHLE
Sbjct:   267 LEASETNSFGNDVYNVKFEK-------KGEYPLFGCKYDFHLE 302

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005845 "mRNA cap binding complex" evidence=IEA

UNIPROTKB|F1MHQ5 RNMT "mRNA cap guanine-N7 methyltransferase" [Bos taurus (taxid:9913)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 88/224 (39%), Positives = 121/224 (54%)

Query:    43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYA-------RRGDVVLDLACGK 95
             VA HY+      LE+R  S I +L+  NNW+KSVL+  +        +R   VLDL CGK
Sbjct:   149 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRNITVLDLGCGK 208

Query:    96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EV 154
             GGDL+KW K +I   V  DIA+ S+  C+ RY  D  +  R  ++ F A  I  DC  E+
Sbjct:   209 GGDLLKWKKGRIDKLVCTDIADVSVRQCQQRYE-DMKNRCRDNEYIFSAEFITADCSKEL 267

Query:   155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214
               DK    +  FDICSCQF  HYS+ +  +A   L N    L PGG FIGT P++  +I+
Sbjct:   268 LTDKFRDREMCFDICSCQFVCHYSFESYEQADVMLRNACERLSPGGYFIGTTPNSFELIR 327

Query:   215 KLREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLE 257
             +L   E  + GN +Y ++  +       K   P FG +Y F+LE
Sbjct:   328 RLEASETESFGNEIYTVKFQK-------KGDYPLFGCKYDFNLE 364

GO:0005845 "mRNA cap binding complex" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

UNIPROTKB|E2R4R3 RNMT "mRNA cap guanine-N7 methyltransferase" [Canis lupus familiaris (taxid:9615)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 86/224 (38%), Positives = 124/224 (55%)

Query:    43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYA------RRGDV-VLDLACGK 95
             VA HY+      LE+R  S I +L+  NNW+KSVL+  +       ++ D+ VLDL CGK
Sbjct:   150 VAAHYNELQEVGLEKRSQSRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGK 209

Query:    96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY-EV 154
             GGDL+KW K +I   V  DIA+ S++ C+ RY  D  +  R  ++ F A  +  DC  E+
Sbjct:   210 GGDLLKWKKGRINKLVCTDIADVSVKQCQQRYE-DMKNRCRDNEYIFNAEFVTADCSKEL 268

Query:   155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK 214
               +K    +  FDICSCQF  HYS+ +  +A   L N    L PGG FIGT P++  +I+
Sbjct:   269 LFNKFRDPETCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIR 328

Query:   215 KLREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLE 257
             +L   E  + GN +Y ++  +       K   P FG +Y F+LE
Sbjct:   329 RLEASETESFGNEIYTVKFQK-------KGDYPLFGCKYDFNLE 365

GO:0005634 "nucleus" evidence=IEA

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

SGD|S000000440 ABD1 "Methyltransferase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
 Identities = 89/225 (39%), Positives = 125/225 (55%)

Query:    43 VADHYSRRTN-QTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
             V +HY+ RT      +R  SPII L+  NN IK +L+  Y + GDVVL+L CGKGGDL K
Sbjct:   122 VREHYNERTIIANRAKRNLSPIIKLRNFNNAIKYMLIDKYTKPGDVVLELGCGKGGDLRK 181

Query:   102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161
             +  A I  ++GIDI+  SI++   RY          +   +   LI GDC+   L   + 
Sbjct:   182 YGAAGISQFIGIDISNASIQEAHKRYRS-------MRNLDYQVVLITGDCFGESLGVAVE 234

Query:   162 D--DA--PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL- 216
                D   P DI S QF +HY++ TE +ARRAL NV+  L+ GG F GT+PD+  I  KL 
Sbjct:   235 PFPDCRFPCDIVSTQFCLHYAFETEEKARRALLNVAKSLKIGGHFFGTIPDSEFIRYKLN 294

Query:   217 ---REVEGLAIGNSVYWIRLDEEFADKK-FKSSRPFGIQYKFHLE 257
                +EVE  + GNS+Y +  +     K  ++ + P+G  Y + LE
Sbjct:   295 KFPKEVEKPSWGNSIYKVTFENNSYQKNDYEFTSPYGQMYTYWLE 339

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISS;IDA

GO:0006370 "7-methylguanosine mRNA capping" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IEA;IPI

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=IPI

GO:0036265 "RNA (guanine-N7)-methylation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

MGI|MGI:1915147 Rnmt "RNA (guanine-7-) methyltransferase" [Mus musculus (taxid:10090)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 88/225 (39%), Positives = 127/225 (56%)

Query:    43 VADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLV-----QLYARRG-DV-VLDLACGK 95
             VA HY+      L +R  S I +L+  NNWIKS+L+     ++  R+  D+ VLDL CGK
Sbjct:   138 VAAHYNELQEVGLAKRSQSRIFYLRNFNNWIKSILIGEILEKVRQRKTRDITVLDLGCGK 197

Query:    96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCY-E 153
             GGDL+KW K +I   V  DIA+ S++ C+ RY    D   RR  +  F A  I  DC  E
Sbjct:   198 GGDLLKWRKGRISRLVCADIADISMKQCQQRYE---DMRCRRDNEHIFSAEFITADCSKE 254

Query:   154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII 213
             + ++K    +  FD+CSCQFA HYS+ ++ +A   L N    L PGG FIGT P++  +I
Sbjct:   255 LLVEKFRDPEMYFDVCSCQFACHYSFESQVQADTMLRNACGRLNPGGYFIGTTPNSFELI 314

Query:   214 KKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLE 257
             ++L   E  + GN +Y ++  +       K + P FG +Y F+LE
Sbjct:   315 RRLEASETESFGNEIYTVKFQK-------KGNYPLFGCKYDFNLE 352

GO:0003723 "RNA binding" evidence=ISO

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005845 "mRNA cap binding complex" evidence=ISO

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISO

GO:0080009 "mRNA methylation" evidence=ISO

RGD|1309242 Rnmt "RNA (guanine-7-) methyltransferase" [Rattus norvegicus (taxid:10116)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 98/273 (35%), Positives = 145/273 (53%)

Query:     1 MKRGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKV------FARKVADHYSRRTNQT 54
             ++RG       S G   +R ++    D+  LE ++ K        +  VA HY+      
Sbjct:    88 LERGGGSEDEPSPGGLTERKRKLQPQDA--LETQTRKFQKLEEGHSSAVAAHYNELQEVG 145

Query:    55 LEEREASPIIHLKKLNNWIKSVLV-----QLYARRG-DV-VLDLACGKGGDLIKWDKAKI 107
             L +R  S I +L+  NNWIKS+L+     ++  R+  D+ VLDL CGKGGDL+KW K +I
Sbjct:   146 LVKRSQSRIFYLRNFNNWIKSILIGEILEKVRQRKNRDITVLDLGCGKGGDLLKWRKGRI 205

Query:   108 GYYVGIDIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCY-EVHLDKVLADDAP 165
                V  DIA+ S++ C+ RY    D   RR  ++ F A  I  DC  E+ ++K    +  
Sbjct:   206 SRLVCADIADISMKQCQQRYE---DMKCRRDNEYIFSAEFITADCSKELLVEKFHDPEMY 262

Query:   166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIG 225
             FDICSCQFA HYS+ +  +A   L N    L PGG FIGT P++  +I++L   E  + G
Sbjct:   263 FDICSCQFACHYSFESLEQADMMLRNACGRLNPGGYFIGTTPNSFELIRRLEASETESFG 322

Query:   226 NSVYWIRLDEEFADKKFKSSRP-FGIQYKFHLE 257
             N +Y ++  +       K + P FG +Y F+LE
Sbjct:   323 NEIYTVKFQK-------KGNYPLFGCKYDFNLE 348

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA;ISO;ISS

GO:0004482 "mRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISO;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO;ISS

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005845 "mRNA cap binding complex" evidence=ISO;ISS

GO:0006370 "7-methylguanosine mRNA capping" evidence=ISO;ISS

GO:0008150 "biological_process" evidence=ND

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LHQ7	MCES1_ARATH	2, ., 1, ., 1, ., 5, 6	0.8638	0.9809	0.6945	yes	no
Q6Z9U7	MCES1_ORYSJ	2, ., 1, ., 1, ., 5, 6	0.7237	0.9770	0.6937	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.976
4th Layer	2.1.1.56	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
pfam03291	327	pfam03291, Pox_MCEL, mRNA capping enzyme	8e-98
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	2e-10
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	2e-10
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-09
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	2e-09
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	2e-09
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	4e-07
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	5e-07
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	6e-05
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	8e-05
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	2e-04
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	2e-04

>gnl|CDD|217477 pfam03291, Pox_MCEL, mRNA capping enzyme

 Score =  288 bits (740), Expect = 8e-98
 Identities = 97/240 (40%), Positives = 130/240 (54%), Gaps = 18/240 (7%)

Query: 30  FLEDESTKVFARKVADHYSRRTNQT--LEEREASPIIHLKKLNNWIKSVLVQLYAR---- 83
               E+       VA HY+        L++R+ S I  L+  NNWIKS+L+ LYA     
Sbjct: 1   EGPFETESNIVDIVAAHYNELPESGIDLKKRQDSTIDQLRNFNNWIKSLLISLYASKTFQ 60

Query: 84  --RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGD-ADHHQRRKKF 140
                 VLDL CGKGGDL K+ K  I   +G DIAE SIE  + RYN   +    +  KF
Sbjct: 61  DKPKRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERYNDLNSRSKSKYYKF 120

Query: 141 SFPARLICGDCYEVHLDKVLADDA-PFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199
            F A  I GDC+   + +V       FDI S QFA+HYS+ +E +AR  L N++ LL  G
Sbjct: 121 DFIAEFITGDCFVSSVREVFEPGQRKFDIVSWQFAIHYSFESEEKARTMLRNLAELLASG 180

Query: 200 GTFIGTMPDANVIIKKLR--EVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLE 257
           G FIGT PD + IIKKL    VE  + GNS+Y++  +++          PFGI+Y ++LE
Sbjct: 181 GKFIGTTPDGDFIIKKLTATFVEHKSFGNSIYYVSFEKD------PPRPPFGIKYVYNLE 234

This family of enzymes are related to pfam03919. Length = 327

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 24/115 (20%)

Query: 89  LDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC 148
           LD+ CG G       +       G+D++   +   R R                  + + 
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP---------------RKFVV 45

Query: 149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
           GD  ++        D  FD+      +H+         RAL  ++ +L+PGG  +
Sbjct: 46  GDAEDLPF-----PDESFDVVVSSLVLHHL----PDPERALREIARVLKPGGKLV 91

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 26/116 (22%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 88  VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147
           VLDL CG G   +           G+DI+  ++E  R                +    ++
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKA---------AAALLADNVEVL 52

Query: 148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
            GD  E+  +     D  FD+      +H+         R L     LL+PGG  +
Sbjct: 53  KGDAEELPPEA----DESFDVIISDPPLHHL---VEDLARFLEEARRLLKPGGVLV 101

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 53.5 bits (129), Expect = 2e-09
 Identities = 24/121 (19%), Positives = 37/121 (30%), Gaps = 22/121 (18%)

Query: 84  RGDVVLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142
            G  VLD+ CG G   I+  +   G    G+D++   +E  R                  
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPR-------- 52

Query: 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202
               + GD         L     FD                     L  +++LL+PGG  
Sbjct: 53  -ITFVQGD-----APDALDLLEGFDAVFIGGGGG-------DLLELLDALASLLKPGGRL 99

Query: 203 I 203
           +
Sbjct: 100 V 100

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 18/115 (15%)

Query: 89  LDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147
           LD+ CG G  L    +A  G  Y G+DI+  ++E    R          R +        
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLD------ 54

Query: 148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202
                   LD +  D   FD+      +H+     A  R  L N+  LL+PGG  
Sbjct: 55  -------VLDAIDLDPGSFDVVVASNVLHHL----ADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 28/114 (24%), Positives = 46/114 (40%), Gaps = 18/114 (15%)

Query: 88  VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147
           +LDL CG G  L    +A      G+DI++ ++E  + R           +      R +
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERL----------RDKGPKVRFV 50

Query: 148 CGDCYEVHLDKVLADDAPFDICSCQFA-MHYSWSTEARARRALANVSALLRPGG 200
             D  ++       ++  FD+  C    + Y    + RA   L   + LLRPGG
Sbjct: 51  VADARDLP-----FEEGSFDLVICAGLSLDYLSPKQLRA--LLREAARLLRPGG 97

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 35/132 (26%), Positives = 48/132 (36%), Gaps = 23/132 (17%)

Query: 80  LYARRGDVVLDLACGKGGDL--IKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR 137
           L  + GD VLD+ CG G D   +       G  VGID +E  +   + R  G        
Sbjct: 15  LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGP----- 69

Query: 138 KKFSFPARLICGDCYEVHLDKVLADDAPFDIC-SCQFAMHYSWSTEARARRALANVSALL 196
                    + GD   +        D  FD   S +   H          RALA ++ +L
Sbjct: 70  -----NVEFVRGDADGLPF-----PDGSFDAVRSDRVLQHL-----EDPARALAEIARVL 114

Query: 197 RPGGTFIGTMPD 208
           RPGG  +    D
Sbjct: 115 RPGGRVVVLDTD 126

Length = 241

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 47.8 bits (114), Expect = 5e-07
 Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 21/125 (16%)

Query: 83  RRGDVVLDLACGKGGDLIKWDKAKIGY----YVGIDIAEGSIEDCRTRYNGDADHHQRRK 138
           + G  VLDL CG G        A+        VGIDI+E +IE  +            +K
Sbjct: 2   KSGIKVLDLGCGTGYLTFIL--AEKLGPGAEVVGIDISEEAIEKAKEN---------AKK 50

Query: 139 KFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP 198
                   I GD  E  L ++  +D  FD+      +++    +      L  +  +L+P
Sbjct: 51  LGYENVEFIQGDIEE--LPQLQLEDNSFDVVISNEVLNHLPDPDK----VLEEIIRVLKP 104

Query: 199 GGTFI 203
           GG  I
Sbjct: 105 GGVLI 109

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 41.3 bits (97), Expect = 6e-05
 Identities = 27/124 (21%), Positives = 38/124 (30%), Gaps = 17/124 (13%)

Query: 85  GDVVLDLACGKGGDLIK-WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143
           GD VLD   G G  L+           VG+++   +    R R                 
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAP--------R 52

Query: 144 ARLICGDCYEVHLDKVLADDAPFD-ICSCQF---AMHYSWSTEARARRALANVSALLRPG 199
            R++ GD  E+        D  FD +                     R LA    LL+PG
Sbjct: 53  VRVVVGDARELLE----LPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPG 108

Query: 200 GTFI 203
           G  +
Sbjct: 109 GVLV 112

This family contains methyltransferase domains. Length = 117

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 42.6 bits (101), Expect = 8e-05
 Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 33/140 (23%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKW-DKAKIGYYVGIDIAEGSIEDCRTRYNGD 130
           W ++++  L  + GD VLD+ACG G   +        G  VG+DI+E  +E         
Sbjct: 39  WRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLE--------- 89

Query: 131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLAD-------DAPFDICSCQFAMHYSWSTEA 183
                        AR         +++ V+ D       D  FD  +  F +        
Sbjct: 90  ------------VAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNV----T 133

Query: 184 RARRALANVSALLRPGGTFI 203
              +AL  +  +L+PGG  +
Sbjct: 134 DIDKALKEMYRVLKPGGRLL 153

Length = 238

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 32/85 (37%), Positives = 40/85 (47%), Gaps = 15/85 (17%)

Query: 37  KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKG 96
           ++F   +A  Y    N  L     S  +H      W +  +  L  R GD VLDLACG  
Sbjct: 15  EMFDS-IAPKYDL-MNDLL-----SFGLHRV----WRRKTIKWLGVRPGDKVLDLACGT- 62

Query: 97  GDL-IKWDKA--KIGYYVGIDIAEG 118
           GDL I   KA  K G  VG+D +EG
Sbjct: 63  GDLAIALAKAVGKTGEVVGLDFSEG 87

Length = 239

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 41.4 bits (94), Expect = 2e-04
 Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 17/131 (12%)

Query: 81  YARRGDVVLDLACGKGGD-LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK 139
               G  VLD+ CG G   L+     +  Y VG+D++   +   R R  G          
Sbjct: 45  LLPGGLGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL----- 99

Query: 140 FSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199
                  +  D     L     D A FD+      +H          +AL  +  +L+PG
Sbjct: 100 ----VDFVVADALGGVLP--FEDSASFDLVISLLVLHL-----LPPAKALRELLRVLKPG 148

Query: 200 GTFIGTMPDAN 210
           G  + +    +
Sbjct: 149 GRLVLSDLLRD 159

Length = 257

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	100.0
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.97
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.92
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.9
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.86
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.85
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.83
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.82
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.82
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.82
PLN02244	340	tocopherol O-methyltransferase	99.82
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.81
PRK05785	226	hypothetical protein; Provisional	99.81
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.8
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.79
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.77
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.77
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.77
PRK11207	197	tellurite resistance protein TehB; Provisional	99.75
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.74
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.74
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.73
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.73
PLN02490	340	MPBQ/MSBQ methyltransferase	99.73
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.72
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.72
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.71
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.71
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.7
PLN02336	475	phosphoethanolamine N-methyltransferase	99.7
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.7
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.7
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.7
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.7
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.7
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.69
KOG4300	252	consensus Predicted methyltransferase [General fun	99.69
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.68
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.67
PRK12335	287	tellurite resistance protein TehB; Provisional	99.67
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.67
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.66
PRK06922	677	hypothetical protein; Provisional	99.66
PRK08317	241	hypothetical protein; Provisional	99.66
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.66
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.66
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.66
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.64
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.64
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.64
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.64
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.63
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.63
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.63
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.61
PLN03075	296	nicotianamine synthase; Provisional	99.61
KOG1271	227	consensus Methyltransferases [General function pre	99.61
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.6
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.6
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.6
TIGR03438	301	probable methyltransferase. This model represents	99.6
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.6
PRK06202	232	hypothetical protein; Provisional	99.59
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.58
PLN02336	475	phosphoethanolamine N-methyltransferase	99.58
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.57
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.57
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.57
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.57
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.56
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.55
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.55
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.54
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.54
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.53
PRK14967	223	putative methyltransferase; Provisional	99.53
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.52
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.52
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.52
PRK04266	226	fibrillarin; Provisional	99.51
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.51
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.51
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.5
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.5
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.49
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.49
KOG2361	264	consensus Predicted methyltransferase [General fun	99.48
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.48
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.48
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.48
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.47
PRK07402	196	precorrin-6B methylase; Provisional	99.47
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.46
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.46
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.46
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.43
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.43
PRK04457	262	spermidine synthase; Provisional	99.43
PRK14968	188	putative methyltransferase; Provisional	99.42
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.41
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.4
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.4
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.4
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.4
KOG3010	261	consensus Methyltransferase [General function pred	99.39
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.39
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.39
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.38
PTZ00146	293	fibrillarin; Provisional	99.38
PRK00811	283	spermidine synthase; Provisional	99.38
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.37
TIGR00438	188	rrmJ cell division protein FtsJ.	99.36
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.35
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.35
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.35
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.34
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.34
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.34
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.33
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.33
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	99.32
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.32
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.32
COG4123	248	Predicted O-methyltransferase [General function pr	99.32
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.31
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.28
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	99.28
PHA03411	279	putative methyltransferase; Provisional	99.27
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.27
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.26
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.25
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.25
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.24
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.24
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.24
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.22
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.21
KOG2904	328	consensus Predicted methyltransferase [General fun	99.2
PRK01581	374	speE spermidine synthase; Validated	99.19
PLN02366	308	spermidine synthase	99.19
PHA03412	241	putative methyltransferase; Provisional	99.18
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.17
COG2890	280	HemK Methylase of polypeptide chain release factor	99.17
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	99.16
KOG2899	288	consensus Predicted methyltransferase [General fun	99.16
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	99.16
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	99.16
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.16
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	99.14
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.14
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.13
PRK03612	521	spermidine synthase; Provisional	99.13
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	99.12
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	99.11
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	99.1
PLN02476	278	O-methyltransferase	99.09
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.07
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	99.06
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.05
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	99.04
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.03
KOG2940	325	consensus Predicted methyltransferase [General fun	99.03
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	99.02
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	99.02
COG4122	219	Predicted O-methyltransferase [General function pr	99.01
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.0
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.0
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.98
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.98
KOG1331	293	consensus Predicted methyltransferase [General fun	98.97
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.97
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.97
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	98.95
PLN02672	1082	methionine S-methyltransferase	98.95
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.94
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.94
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.9
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.89
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.87
PLN02823	336	spermine synthase	98.87
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.83
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.82
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.82
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.82
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.81
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.81
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.8
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.8
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.79
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.76
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.75
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.75
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.72
PRK04148	134	hypothetical protein; Provisional	98.69
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	98.69
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.68
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	98.68
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.66
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	98.66
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.66
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.65
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.65
PRK00536	262	speE spermidine synthase; Provisional	98.64
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.63
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.62
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	98.62
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.62
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.61
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.6
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.59
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.57
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.55
COG2520	341	Predicted methyltransferase [General function pred	98.52
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.5
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.49
COG2521	287	Predicted archaeal methyltransferase [General func	98.48
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.47
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	98.47
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	98.46
KOG2730	263	consensus Methylase [General function prediction o	98.44
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.43
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	98.43
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.41
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.38
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	98.34
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.33
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.33
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.31
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.29
PF13679	141	Methyltransf_32: Methyltransferase domain	98.27
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.25
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.22
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.15
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	98.12
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.12
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.11
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.1
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.06
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	98.04
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.04
COG4076	252	Predicted RNA methylase [General function predicti	98.02
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	98.02
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.02
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.99
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.89
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	97.86
COG3897	218	Predicted methyltransferase [General function pred	97.85
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	97.85
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.81
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.8
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.74
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	97.73
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.67
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.55
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.54
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	97.49
COG0286	489	HsdM Type I restriction-modification system methyl	97.49
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.44
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.4
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.38
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	97.36
PRK10742	250	putative methyltransferase; Provisional	97.35
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	97.27
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	97.26
KOG3115	249	consensus Methyltransferase-like protein [General	97.23
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.18
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.16
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	97.08
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.02
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.0
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.98
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	96.93
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	96.92
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.87
PRK11524	284	putative methyltransferase; Provisional	96.85
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.82
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	96.68
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.66
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	96.65
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	96.59
PHA01634	156	hypothetical protein	96.5
PRK13699	227	putative methylase; Provisional	96.42
KOG1501	636	consensus Arginine N-methyltransferase [General fu	96.41
COG4301	321	Uncharacterized conserved protein [Function unknow	96.39
PLN02668	386	indole-3-acetate carboxyl methyltransferase	96.36
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.28
COG4798	238	Predicted methyltransferase [General function pred	96.26
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	96.21
COG3129	292	Predicted SAM-dependent methyltransferase [General	96.2
PF03269	177	DUF268: Caenorhabditis protein of unknown function	96.2
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	96.1
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	96.07
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.04
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.01
KOG3924	419	consensus Putative protein methyltransferase invol	95.85
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.74
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	95.68
KOG2920	282	consensus Predicted methyltransferase [General fun	95.68
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.51
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.42
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	95.38
PRK11524	284	putative methyltransferase; Provisional	95.08
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	94.98
KOG1227	351	consensus Putative methyltransferase [General func	94.95
COG1565	370	Uncharacterized conserved protein [Function unknow	94.92
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	94.77
KOG2539	491	consensus Mitochondrial/chloroplast ribosome small	94.39
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	94.36
PRK13699	227	putative methylase; Provisional	94.31
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.26
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	94.22
COG3315	297	O-Methyltransferase involved in polyketide biosynt	94.14
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	94.14
PF03514	374	GRAS: GRAS domain family; InterPro: IPR005202 Sequ	93.9
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	93.57
TIGR00497	501	hsdM type I restriction system adenine methylase (	93.44
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	93.28
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	93.06
PF04072	183	LCM: Leucine carboxyl methyltransferase; InterPro:	93.03
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	92.88
PTZ00357	1072	methyltransferase; Provisional	92.83
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	92.83
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	92.59
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	92.24
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	92.22
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	92.06
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	92.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	91.71
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	91.47
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	91.41
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	91.31
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	91.08
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.04
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	90.89
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	90.67
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	90.46
PRK10669	558	putative cation:proton antiport protein; Provision	90.39
COG1568	354	Predicted methyltransferases [General function pre	90.36
PRK03562	621	glutathione-regulated potassium-efflux system prot	90.08
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	89.79
PRK03659	601	glutathione-regulated potassium-efflux system prot	89.71
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	89.35
PRK10458	467	DNA cytosine methylase; Provisional	89.34
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	88.67
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	88.59
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	88.46
KOG2078	495	consensus tRNA modification enzyme [RNA processing	88.43
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	88.29
PLN02740	381	Alcohol dehydrogenase-like	87.82
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	87.16
COG0863	302	DNA modification methylase [DNA replication, recom	87.12
COG2933	358	Predicted SAM-dependent methyltransferase [General	87.0
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	86.16
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	86.01
KOG2352	482	consensus Predicted spermine/spermidine synthase [	85.84
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	85.22
PRK09496	453	trkA potassium transporter peripheral membrane com	85.2
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	85.01
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	84.95
PLN02827	378	Alcohol dehydrogenase-like	84.92
PLN02586	360	probable cinnamyl alcohol dehydrogenase	84.89
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	84.81
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	84.64
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	84.61
PLN02494	477	adenosylhomocysteinase	84.12
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	83.71
COG1255	129	Uncharacterized protein conserved in archaea [Func	83.37
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	83.26
COG0569	225	TrkA K+ transport systems, NAD-binding component [	83.12
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	83.0
PRK09496	453	trkA potassium transporter peripheral membrane com	82.98
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	82.56
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	82.44
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	82.39
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	82.36
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	82.21
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	81.87
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	81.39
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	81.03
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	80.75
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	80.59
PRK07417	279	arogenate dehydrogenase; Reviewed	80.41
KOG2912	419	consensus Predicted DNA methylase [Function unknow	80.39

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=100.00  E-value=1.5e-34  Score=234.55  Aligned_cols=222  Identities=54%  Similarity=0.926  Sum_probs=192.5

Q ss_pred             cchhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEE
Q 024797           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI  113 (262)
Q Consensus        34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gv  113 (262)
                      ..+..+-+.++++|++....+...+..++++.++++++|++.+|......++..++|+|||-|..++.+-+++.+.++|+
T Consensus        67 ~~~~~~~~~Va~HYN~~~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igi  146 (389)
T KOG1975|consen   67 EANESKSSEVAEHYNERTEVGREKRQRSPIIFLRNFNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGI  146 (389)
T ss_pred             hhccchhHHHHHHHHHHHHHhHhhhccCceeehhhhhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEee
Confidence            34556788999999999999999999999999999999999999999999999999999999999999988888899999


Q ss_pred             eCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc-CCCCCeeEEEEcccccccCCCHHHHHHHHHHH
Q 024797          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL-ADDAPFDICSCQFAMHYSWSTEARARRALANV  192 (262)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~  192 (262)
                      ||++..+++|+++....-.   ...+....+.|+++|.....+.+.. +++.+||+|.|.+++||.|.+.+..+.+|+++
T Consensus       147 DIAevSI~qa~~RYrdm~~---r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nv  223 (389)
T KOG1975|consen  147 DIAEVSINQARKRYRDMKN---RFKKFIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNV  223 (389)
T ss_pred             ehhhccHHHHHHHHHHHHh---hhhcccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHH
Confidence            9999999999999873211   1124556789999998765554433 23445999999999999999999999999999


Q ss_pred             HhccCCCcEEEEEeCChHHHHHHHhhhcCCccccceEEEEcCchhhhccCCCCCCcceeEEEEecCCC
Q 024797          193 SALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVPF  260 (262)
Q Consensus       193 ~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~y~f~l~~~~  260 (262)
                      .+.|+|||++|.++||.+.++++++..+...|||.+|+++|...+ .+.+. -.+||.+|+|+|++.+
T Consensus       224 a~~LkpGG~FIgTiPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~-~k~~~-~p~fG~kY~F~LedaV  289 (389)
T KOG1975|consen  224 AKCLKPGGVFIGTIPDSDVIIKRLRAGEVERFGNDIYKVTYEIEF-QKEFD-VPPFGAKYRFHLEDAV  289 (389)
T ss_pred             HhhcCCCcEEEEecCcHHHHHHHHHhccchhhcceeeeEeeeeec-ccccC-CCCccceEEEEccccc
Confidence            999999999999999999999999998888999999999999444 44444 5789999999999864

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.97  E-value=1e-29  Score=215.42  Aligned_cols=218  Identities=50%  Similarity=0.873  Sum_probs=155.1

Q ss_pred             hHHHHHHHHHhhhhcccc--HhhhhcCccccchhHHHHHHHHHHHHhcc------CCCeEEEecCCCCcchHHHHhcCCC
Q 024797           37 KVFARKVADHYSRRTNQT--LEEREASPIIHLKKLNNWIKSVLVQLYAR------RGDVVLDLACGKGGDLIKWDKAKIG  108 (262)
Q Consensus        37 ~~~~~~~a~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~  108 (262)
                      ...-+.++++|+......  ...+..++++.++.++.|++.+|......      ++.+|||+|||-|..+..|...+..
T Consensus         7 ~~~~~~v~~hYn~~~~~~~~~~~R~~S~i~~lR~fNNwvKs~LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~   86 (331)
T PF03291_consen    7 SDVTDVVAEHYNQRPEVGIDLKERQESPIFHLRNFNNWVKSVLIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIK   86 (331)
T ss_dssp             ---------------------------TCHHHHHHHHHHHHHHHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-S
T ss_pred             ccHHHHHHHHHhccccccchhhhhhhChhHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCC
Confidence            345567899998877666  77888999999999999999999988877      8899999999999999999888888


Q ss_pred             eEEEEeCChhHHHHHHHHhccCcccc-ccccCCCCCeEEEeCcccccccccccCCC-CCeeEEEEcccccccCCCHHHHH
Q 024797          109 YYVGIDIAEGSIEDCRTRYNGDADHH-QRRKKFSFPARLICGDCYEVHLDKVLADD-APFDICSCQFAMHYSWSTEARAR  186 (262)
Q Consensus       109 ~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~  186 (262)
                      .++|+|+|...|+.|+++..+..... .+.........++++|.....+.....+. ..||+|.|.+++||++.+.+..+
T Consensus        87 ~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar  166 (331)
T PF03291_consen   87 HYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKAR  166 (331)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHH
Confidence            99999999999999999994322111 11122345678899998765554433233 69999999999999999999999


Q ss_pred             HHHHHHHhccCCCcEEEEEeCChHHHHHHHhh----hcCCccccceEEEEcCchhhhccCCCCCCcceeEEEEecCCC
Q 024797          187 RALANVSALLRPGGTFIGTMPDANVIIKKLRE----VEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVPF  260 (262)
Q Consensus       187 ~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~y~f~l~~~~  260 (262)
                      .+|.++.+.|+|||++|.++||.+.+..++.+    .....+++.+|.++|+.+      ....+||.+|.|+|++.+
T Consensus       167 ~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~------~~~~~fG~~Y~F~L~~~v  238 (331)
T PF03291_consen  167 QFLKNVSSLLKPGGYFIGTTPDSDEIVKRLREKKSNSEKKKFGNSVYSIEFDSD------DFFPPFGAKYDFYLEDAV  238 (331)
T ss_dssp             HHHHHHHHTEEEEEEEEEEEE-HHHHHCCHHC-EEECCCSCSETSSEEEEESCC------SS--CTTEEEEEEETTCS
T ss_pred             HHHHHHHHhcCCCCEEEEEecCHHHHHHHHHhhcccccccccCCccEEEEeccc------CCCCCCCcEEEEEecCcC
Confidence            99999999999999999999999999888877    457789999999999988      233569999999999864

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.92  E-value=8.7e-25  Score=175.79  Aligned_cols=144  Identities=26%  Similarity=0.467  Sum_probs=123.7

Q ss_pred             cchhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEE
Q 024797           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVG  112 (262)
Q Consensus        34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~g  112 (262)
                      ...+..|++++..||. .+.         +.++.....|.+.+.......+|.+|||+|||||..+..+++. +.++|+|
T Consensus        11 ~~v~~vF~~ia~~YD~-~n~---------~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~   80 (238)
T COG2226          11 EKVQKVFDKVAKKYDL-MND---------LMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVG   80 (238)
T ss_pred             HHHHHHHHhhHHHHHh-hcc---------cccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEE
Confidence            3455799999999984 333         3347888899999998887778999999999999999988763 5678999


Q ss_pred             EeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHH
Q 024797          113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV  192 (262)
Q Consensus       113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~  192 (262)
                      +|+|+.|++.|+++..+.+.         .+++|+++|+.++|+     ++++||+|++.++++++    .+++++|+++
T Consensus        81 ~D~s~~ML~~a~~k~~~~~~---------~~i~fv~~dAe~LPf-----~D~sFD~vt~~fglrnv----~d~~~aL~E~  142 (238)
T COG2226          81 LDISESMLEVAREKLKKKGV---------QNVEFVVGDAENLPF-----PDNSFDAVTISFGLRNV----TDIDKALKEM  142 (238)
T ss_pred             EECCHHHHHHHHHHhhccCc---------cceEEEEechhhCCC-----CCCccCEEEeeehhhcC----CCHHHHHHHH
Confidence            99999999999999874322         239999999999998     89999999999999988    7899999999


Q ss_pred             HhccCCCcEEEEE
Q 024797          193 SALLRPGGTFIGT  205 (262)
Q Consensus       193 ~~~L~~gG~li~~  205 (262)
                      +|+|||||++++.
T Consensus       143 ~RVlKpgG~~~vl  155 (238)
T COG2226         143 YRVLKPGGRLLVL  155 (238)
T ss_pred             HHhhcCCeEEEEE
Confidence            9999999998764

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.90  E-value=6.2e-24  Score=172.51  Aligned_cols=143  Identities=27%  Similarity=0.505  Sum_probs=85.0

Q ss_pred             chhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEE
Q 024797           35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVG  112 (262)
Q Consensus        35 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g  112 (262)
                      ..+..|+.++..||. .+...         ++.....|.+.++......++.+|||+|||+|..+..+++.  +.++|+|
T Consensus         8 ~v~~~Fd~ia~~YD~-~n~~l---------s~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~   77 (233)
T PF01209_consen    8 YVRKMFDRIAPRYDR-MNDLL---------SFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVG   77 (233)
T ss_dssp             ---------------------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEE
T ss_pred             HHHHHHHHHHHHhCC-Ccccc---------CCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEE
Confidence            345699999999984 43332         25566677777777777788999999999999988888763  4568999


Q ss_pred             EeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHH
Q 024797          113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV  192 (262)
Q Consensus       113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~  192 (262)
                      +|+|+.|++.|+++....+         ..+++++++|++++|+     ++++||+|++.++++++    .++.+.++++
T Consensus        78 vD~s~~ML~~a~~k~~~~~---------~~~i~~v~~da~~lp~-----~d~sfD~v~~~fglrn~----~d~~~~l~E~  139 (233)
T PF01209_consen   78 VDISPGMLEVARKKLKREG---------LQNIEFVQGDAEDLPF-----PDNSFDAVTCSFGLRNF----PDRERALREM  139 (233)
T ss_dssp             EES-HHHHHHHHHHHHHTT-----------SEEEEE-BTTB--S------TT-EEEEEEES-GGG-----SSHHHHHHHH
T ss_pred             ecCCHHHHHHHHHHHHhhC---------CCCeeEEEcCHHHhcC-----CCCceeEEEHHhhHHhh----CCHHHHHHHH
Confidence            9999999999999987422         2369999999999998     78999999999999987    6688899999


Q ss_pred             HhccCCCcEEEEE
Q 024797          193 SALLRPGGTFIGT  205 (262)
Q Consensus       193 ~~~L~~gG~li~~  205 (262)
                      +|+|||||.+++.
T Consensus       140 ~RVLkPGG~l~il  152 (233)
T PF01209_consen  140 YRVLKPGGRLVIL  152 (233)
T ss_dssp             HHHEEEEEEEEEE
T ss_pred             HHHcCCCeEEEEe
Confidence            9999999998754

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.86  E-value=8.3e-21  Score=157.46  Aligned_cols=149  Identities=21%  Similarity=0.318  Sum_probs=112.7

Q ss_pred             cchhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEE
Q 024797           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYV  111 (262)
Q Consensus        34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~  111 (262)
                      ...++.|+.++..|+.. +....         +.....|.+..+......++.+|||+|||+|.++..+++.  +.++|+
T Consensus        33 ~~v~~~f~~~A~~YD~~-~~~~s---------~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~  102 (261)
T PLN02233         33 NERQALFNRIAPVYDNL-NDLLS---------LGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVM  102 (261)
T ss_pred             HHHHHHHHHhhhHHHHh-hhhhc---------CChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEE
Confidence            44667999999999842 22110         2223345554555555667889999999999988877653  345899


Q ss_pred             EEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHH
Q 024797          112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN  191 (262)
Q Consensus       112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~  191 (262)
                      |+|+|++|++.|+++....      ......+++++++|+.++++     ++++||+|++.++++|+    +++..++++
T Consensus       103 gvD~S~~ml~~A~~r~~~~------~~~~~~~i~~~~~d~~~lp~-----~~~sfD~V~~~~~l~~~----~d~~~~l~e  167 (261)
T PLN02233        103 GLDFSSEQLAVAASRQELK------AKSCYKNIEWIEGDATDLPF-----DDCYFDAITMGYGLRNV----VDRLKAMQE  167 (261)
T ss_pred             EEECCHHHHHHHHHHhhhh------hhccCCCeEEEEcccccCCC-----CCCCEeEEEEecccccC----CCHHHHHHH
Confidence            9999999999998765310      01123468999999999887     68899999999999988    578899999


Q ss_pred             HHhccCCCcEEEEEeC
Q 024797          192 VSALLRPGGTFIGTMP  207 (262)
Q Consensus       192 ~~~~L~~gG~li~~~~  207 (262)
                      ++|+|||||.+++...
T Consensus       168 i~rvLkpGG~l~i~d~  183 (261)
T PLN02233        168 MYRVLKPGSRVSILDF  183 (261)
T ss_pred             HHHHcCcCcEEEEEEC
Confidence            9999999999988754

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.85  E-value=5.1e-20  Score=155.89  Aligned_cols=109  Identities=17%  Similarity=0.212  Sum_probs=91.9

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ++.+|||||||+|.++..+++. ...|+|+|+|++|++.|+++....        ....++.++++|+.+++.     ++
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~--------~~~~~i~~~~~dae~l~~-----~~  196 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMD--------PVTSTIEYLCTTAEKLAD-----EG  196 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhc--------CcccceeEEecCHHHhhh-----cc
Confidence            5679999999999988887654 348999999999999999875421        123468999999988765     56


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      ++||+|++..+++|+    .++..+++++.++|||||.+++++.+..
T Consensus       197 ~~FD~Vi~~~vLeHv----~d~~~~L~~l~r~LkPGG~liist~nr~  239 (322)
T PLN02396        197 RKFDAVLSLEVIEHV----ANPAEFCKSLSALTIPNGATVLSTINRT  239 (322)
T ss_pred             CCCCEEEEhhHHHhc----CCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence            899999999999998    5678999999999999999999988764

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.83  E-value=1.2e-19  Score=143.82  Aligned_cols=144  Identities=23%  Similarity=0.315  Sum_probs=117.7

Q ss_pred             hHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-C------CCe
Q 024797           37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K------IGY  109 (262)
Q Consensus        37 ~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~------~~~  109 (262)
                      ...|+.+|..|+ ..+....         ...++-|-...+..+.+.++.++||++||+|-.+..+++. .      ..+
T Consensus        63 ~~vF~~vA~~YD-~mND~mS---------lGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~  132 (296)
T KOG1540|consen   63 HHVFESVAKKYD-IMNDAMS---------LGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESK  132 (296)
T ss_pred             HHHHHHHHHHHH-HHHHHhh---------cchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCce
Confidence            358999999997 3444322         5666778777777888888999999999999888888763 2      257


Q ss_pred             EEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHH
Q 024797          110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRAL  189 (262)
Q Consensus       110 v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l  189 (262)
                      |+++|+|++|+..++++..+.+...      ...+.|+++|++++|+     ++++||..++.+.+.++    .++++++
T Consensus       133 V~v~Dinp~mL~vgkqRa~~~~l~~------~~~~~w~~~dAE~LpF-----dd~s~D~yTiafGIRN~----th~~k~l  197 (296)
T KOG1540|consen  133 VTVLDINPHMLAVGKQRAKKRPLKA------SSRVEWVEGDAEDLPF-----DDDSFDAYTIAFGIRNV----THIQKAL  197 (296)
T ss_pred             EEEEeCCHHHHHHHHHHHhhcCCCc------CCceEEEeCCcccCCC-----CCCcceeEEEecceecC----CCHHHHH
Confidence            9999999999999999986433221      2348999999999998     89999999999999977    7899999


Q ss_pred             HHHHhccCCCcEEEEE
Q 024797          190 ANVSALLRPGGTFIGT  205 (262)
Q Consensus       190 ~~~~~~L~~gG~li~~  205 (262)
                      ++++|+|||||++.+-
T Consensus       198 ~EAYRVLKpGGrf~cL  213 (296)
T KOG1540|consen  198 REAYRVLKPGGRFSCL  213 (296)
T ss_pred             HHHHHhcCCCcEEEEE
Confidence            9999999999998653

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.82  E-value=3.2e-20  Score=146.97  Aligned_cols=152  Identities=16%  Similarity=0.205  Sum_probs=112.0

Q ss_pred             cchhHHHHHHHHHhhhhccccHhhhhcCccccchhH-HHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEE
Q 024797           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKL-NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVG  112 (262)
Q Consensus        34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g  112 (262)
                      ....+.|+.++..|++.......-..      +... ..|++........-++.+|||+|||.|.++..+++.+ ..|+|
T Consensus        14 ~~e~~~F~~la~~wwd~~g~f~~LH~------~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~G-a~Vtg   86 (243)
T COG2227          14 YKELDKFEALASRWWDPEGEFKPLHK------INPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLG-ASVTG   86 (243)
T ss_pred             HHHHHHHHHHHhhhcCCCCceeeeee------eccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCC-CeeEE
Confidence            34557889999999753322111000      1111 1233333221111478999999999999999998766 58999


Q ss_pred             EeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHH
Q 024797          113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV  192 (262)
Q Consensus       113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~  192 (262)
                      +|+++++++.|+.+..+.          +..+++.+..++++..     ..++||+|+|.-+++|+    +++..+++.+
T Consensus        87 iD~se~~I~~Ak~ha~e~----------gv~i~y~~~~~edl~~-----~~~~FDvV~cmEVlEHv----~dp~~~~~~c  147 (243)
T COG2227          87 IDASEKPIEVAKLHALES----------GVNIDYRQATVEDLAS-----AGGQFDVVTCMEVLEHV----PDPESFLRAC  147 (243)
T ss_pred             ecCChHHHHHHHHhhhhc----------cccccchhhhHHHHHh-----cCCCccEEEEhhHHHcc----CCHHHHHHHH
Confidence            999999999999987743          2336678888777764     44899999999999999    7788899999


Q ss_pred             HhccCCCcEEEEEeCChHH
Q 024797          193 SALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       193 ~~~L~~gG~li~~~~~~~~  211 (262)
                      .+.+||||.++++++|...
T Consensus       148 ~~lvkP~G~lf~STinrt~  166 (243)
T COG2227         148 AKLVKPGGILFLSTINRTL  166 (243)
T ss_pred             HHHcCCCcEEEEeccccCH
Confidence            9999999999999998653

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.82  E-value=1e-19  Score=127.52  Aligned_cols=95  Identities=27%  Similarity=0.439  Sum_probs=82.8

Q ss_pred             EEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeE
Q 024797           89 LDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDI  168 (262)
Q Consensus        89 LDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~  168 (262)
                      ||+|||+|..+..+++.+...|+|+|+|+.+++.++++..            ..++.+.++|+.++++     ++++||+
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~------------~~~~~~~~~d~~~l~~-----~~~sfD~   63 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK------------NEGVSFRQGDAEDLPF-----PDNSFDV   63 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT------------TSTEEEEESBTTSSSS------TT-EEE
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc------------ccCchheeehHHhCcc-----ccccccc
Confidence            8999999999999887756789999999999999999876            3446699999999988     7899999


Q ss_pred             EEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          169 CSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       169 V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      |++..+++|+    +++.++++++.|+|||||+++|
T Consensus        64 v~~~~~~~~~----~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   64 VFSNSVLHHL----EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EEEESHGGGS----SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccceeec----cCHHHHHHHHHHHcCcCeEEeC
Confidence            9999999998    8899999999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.82  E-value=2.6e-19  Score=146.32  Aligned_cols=144  Identities=21%  Similarity=0.416  Sum_probs=116.0

Q ss_pred             chhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEE
Q 024797           35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVG  112 (262)
Q Consensus        35 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~g  112 (262)
                      ....+|+.++..|+... ..         .++.....|...++..+...++.+|||+|||+|..+..+++.  +.++|+|
T Consensus         6 ~~~~~f~~~a~~yd~~~-~~---------~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~g   75 (231)
T TIGR02752         6 RVHKVFEKIYKKYDRMN-SV---------ISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIG   75 (231)
T ss_pred             HHHHHHHHhhhHHhHHH-HH---------hcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEE
Confidence            35679999999998532 21         224567778887888777778899999999999988888764  3458999


Q ss_pred             EeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHH
Q 024797          113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV  192 (262)
Q Consensus       113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~  192 (262)
                      +|+|+.+++.|+++....+         ..+++++++|+..+++     ++++||+|++.++++++    ++..++++++
T Consensus        76 vD~s~~~~~~a~~~~~~~~---------~~~v~~~~~d~~~~~~-----~~~~fD~V~~~~~l~~~----~~~~~~l~~~  137 (231)
T TIGR02752        76 LDFSENMLSVGRQKVKDAG---------LHNVELVHGNAMELPF-----DDNSFDYVTIGFGLRNV----PDYMQVLREM  137 (231)
T ss_pred             EECCHHHHHHHHHHHHhcC---------CCceEEEEechhcCCC-----CCCCccEEEEecccccC----CCHHHHHHHH
Confidence            9999999999998876321         2358999999988765     57899999999999887    5567899999


Q ss_pred             HhccCCCcEEEEEe
Q 024797          193 SALLRPGGTFIGTM  206 (262)
Q Consensus       193 ~~~L~~gG~li~~~  206 (262)
                      .++|+|||.+++..
T Consensus       138 ~~~Lk~gG~l~~~~  151 (231)
T TIGR02752       138 YRVVKPGGKVVCLE  151 (231)
T ss_pred             HHHcCcCeEEEEEE
Confidence            99999999998754

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02244 tocopherol O-methyltransferase

Probab=99.82  E-value=6.1e-19  Score=151.65  Aligned_cols=118  Identities=17%  Similarity=0.229  Sum_probs=97.1

Q ss_pred             HHHHHHHHHhc-----cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEE
Q 024797           72 WIKSVLVQLYA-----RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL  146 (262)
Q Consensus        72 ~~~~~l~~~~~-----~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~  146 (262)
                      .+..++.....     .++.+|||+|||+|.++..+++....+|+|+|+|+.|++.++++....        +...++.+
T Consensus       101 ~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~--------g~~~~v~~  172 (340)
T PLN02244        101 MIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ--------GLSDKVSF  172 (340)
T ss_pred             HHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc--------CCCCceEE
Confidence            34445544444     567899999999999998887654558999999999999999876632        23456999


Q ss_pred             EeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       147 ~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +++|+.++++     ++++||+|++..+++|+    .+...+++++.++|||||.+++..
T Consensus       173 ~~~D~~~~~~-----~~~~FD~V~s~~~~~h~----~d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        173 QVADALNQPF-----EDGQFDLVWSMESGEHM----PDKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             EEcCcccCCC-----CCCCccEEEECCchhcc----CCHHHHHHHHHHHcCCCcEEEEEE
Confidence            9999998877     67899999999999998    567899999999999999999865

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.81  E-value=2.9e-19  Score=129.44  Aligned_cols=109  Identities=29%  Similarity=0.470  Sum_probs=88.8

Q ss_pred             CCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc-cccccccccC
Q 024797           84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVHLDKVLA  161 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~  161 (262)
                      |+.+|||+|||+|.++..+++ .+..+++|+|+|+.|++.|+++..+        .....+++++++|+ ....      
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~i~~~~~d~~~~~~------   66 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE--------EGLSDRITFVQGDAEFDPD------   66 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH--------TTTTTTEEEEESCCHGGTT------
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh--------cCCCCCeEEEECccccCcc------
Confidence            578999999999999999987 4666899999999999999999842        23467899999999 3333      


Q ss_pred             CCCCeeEEEEcc-cccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          162 DDAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       162 ~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ..++||+|++.+ ++++++ ..++...+++++.+.|+|||+++++.+
T Consensus        67 ~~~~~D~v~~~~~~~~~~~-~~~~~~~~l~~~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   67 FLEPFDLVICSGFTLHFLL-PLDERRRVLERIRRLLKPGGRLVINTC  112 (112)
T ss_dssp             TSSCEEEEEECSGSGGGCC-HHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             cCCCCCEEEECCCcccccc-chhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            346799999999 555442 236789999999999999999999753

...

>PRK05785 hypothetical protein; Provisional

Probab=99.81  E-value=5.5e-19  Score=143.44  Aligned_cols=129  Identities=22%  Similarity=0.337  Sum_probs=99.5

Q ss_pred             chhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhc--cCCCeEEEecCCCCcchHHHHhcCCCeEEE
Q 024797           35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYA--RRGDVVLDLACGKGGDLIKWDKAKIGYYVG  112 (262)
Q Consensus        35 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g  112 (262)
                      ..++.|+.++..|+.. +...         ++.....|.+.++..+..  .++.+|||+|||+|..+..+++....+|+|
T Consensus        10 ~v~~~f~~iA~~YD~~-n~~~---------s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~g   79 (226)
T PRK05785         10 ELQEAYNKIPKAYDRA-NRFI---------SFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVA   79 (226)
T ss_pred             HHHHHHHhhhHHHHHh-hhhc---------cCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEE
Confidence            3557999999999853 2211         123344566655554432  357899999999999888876543458999


Q ss_pred             EeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHH
Q 024797          113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV  192 (262)
Q Consensus       113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~  192 (262)
                      +|+|++|++.|+++.                 .++++|+..+|+     ++++||+|++.++++|+    .++.++++++
T Consensus        80 vD~S~~Ml~~a~~~~-----------------~~~~~d~~~lp~-----~d~sfD~v~~~~~l~~~----~d~~~~l~e~  133 (226)
T PRK05785         80 LDYAENMLKMNLVAD-----------------DKVVGSFEALPF-----RDKSFDVVMSSFALHAS----DNIEKVIAEF  133 (226)
T ss_pred             ECCCHHHHHHHHhcc-----------------ceEEechhhCCC-----CCCCEEEEEecChhhcc----CCHHHHHHHH
Confidence            999999999998642                 247889988887     78999999999999987    6788999999


Q ss_pred             HhccCCC
Q 024797          193 SALLRPG  199 (262)
Q Consensus       193 ~~~L~~g  199 (262)
                      +|+|||.
T Consensus       134 ~RvLkp~  140 (226)
T PRK05785        134 TRVSRKQ  140 (226)
T ss_pred             HHHhcCc
Confidence            9999995

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.80  E-value=5.9e-19  Score=146.25  Aligned_cols=149  Identities=20%  Similarity=0.286  Sum_probs=110.2

Q ss_pred             HHHHHHHHHhhhhccccHhhhhcCccccchhHHHH--HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeC
Q 024797           38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNW--IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDI  115 (262)
Q Consensus        38 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~  115 (262)
                      ..||.++++|.+........+       .+...-|  +..++..+. .++.+|||+|||+|.++..+++.. .+|+|+|+
T Consensus         4 ~~fd~~a~~f~~~~y~~~~g~-------~r~~~~~~~~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g-~~v~~vD~   74 (255)
T PRK11036          4 RNFDDIAEKFSRNIYGTTKGQ-------IRQAILWQDLDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELG-HQVILCDL   74 (255)
T ss_pred             CChhhHHHHHHHhccCCCccH-------HHHHHHHHHHHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcC-CEEEEEEC
Confidence            468899999987554432211       1111111  233443333 456799999999999998887653 58999999


Q ss_pred             ChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhc
Q 024797          116 AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL  195 (262)
Q Consensus       116 s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~  195 (262)
                      |++|++.|+++....        +...+++++++|+.+++..    .+++||+|++..+++|+    .++..++.++.++
T Consensus        75 s~~~l~~a~~~~~~~--------g~~~~v~~~~~d~~~l~~~----~~~~fD~V~~~~vl~~~----~~~~~~l~~~~~~  138 (255)
T PRK11036         75 SAEMIQRAKQAAEAK--------GVSDNMQFIHCAAQDIAQH----LETPVDLILFHAVLEWV----ADPKSVLQTLWSV  138 (255)
T ss_pred             CHHHHHHHHHHHHhc--------CCccceEEEEcCHHHHhhh----cCCCCCEEEehhHHHhh----CCHHHHHHHHHHH
Confidence            999999999987632        2245689999998876421    46789999999999988    5667899999999


Q ss_pred             cCCCcEEEEEeCChHH
Q 024797          196 LRPGGTFIGTMPDANV  211 (262)
Q Consensus       196 L~~gG~li~~~~~~~~  211 (262)
                      |+|||.+++..++...
T Consensus       139 LkpgG~l~i~~~n~~~  154 (255)
T PRK11036        139 LRPGGALSLMFYNANG  154 (255)
T ss_pred             cCCCeEEEEEEECccH
Confidence            9999999988777653

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.79  E-value=2.6e-18  Score=142.14  Aligned_cols=137  Identities=21%  Similarity=0.325  Sum_probs=104.5

Q ss_pred             cchhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEE
Q 024797           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI  113 (262)
Q Consensus        34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gv  113 (262)
                      ...+..|+..+..|++...               ........++..+...++.+|||+|||+|.++..+... ...++|+
T Consensus         7 ~~i~~~F~~aa~~Y~~~~~---------------~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~   70 (251)
T PRK10258          7 QAIAAAFGRAAAHYEQHAE---------------LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER-GSQVTAL   70 (251)
T ss_pred             HHHHHHHHHHHHhHhHHHH---------------HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc-CCeEEEE
Confidence            3456788888888874211               11112233344443345679999999999888877654 4589999


Q ss_pred             eCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHH
Q 024797          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS  193 (262)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~  193 (262)
                      |+|+.|++.|+++..              ...++++|+..+++     ++++||+|+++.+++++    .++..++.++.
T Consensus        71 D~s~~~l~~a~~~~~--------------~~~~~~~d~~~~~~-----~~~~fD~V~s~~~l~~~----~d~~~~l~~~~  127 (251)
T PRK10258         71 DLSPPMLAQARQKDA--------------ADHYLAGDIESLPL-----ATATFDLAWSNLAVQWC----GNLSTALRELY  127 (251)
T ss_pred             ECCHHHHHHHHhhCC--------------CCCEEEcCcccCcC-----CCCcEEEEEECchhhhc----CCHHHHHHHHH
Confidence            999999999998754              24678999988776     67899999999999987    66889999999


Q ss_pred             hccCCCcEEEEEeCCh
Q 024797          194 ALLRPGGTFIGTMPDA  209 (262)
Q Consensus       194 ~~L~~gG~li~~~~~~  209 (262)
                      ++|+|||.++++++..
T Consensus       128 ~~Lk~gG~l~~~~~~~  143 (251)
T PRK10258        128 RVVRPGGVVAFTTLVQ  143 (251)
T ss_pred             HHcCCCeEEEEEeCCC
Confidence            9999999999987543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.77  E-value=6.6e-18  Score=139.22  Aligned_cols=142  Identities=19%  Similarity=0.365  Sum_probs=103.7

Q ss_pred             HHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHh---cCCCeEEEEeC
Q 024797           39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDI  115 (262)
Q Consensus        39 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~  115 (262)
                      +-+.+++.|++........+        ..+...+..++.. ...++.+|||+|||+|..+..+++   .+..+++|+|+
T Consensus        20 f~~~~a~~yd~~~~~~~p~y--------~~~~~~~~~~~~~-~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~   90 (247)
T PRK15451         20 FDERVAEVFPDMIQRSVPGY--------SNIISMIGMLAER-FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDN   90 (247)
T ss_pred             cChHHHHhhhhHHHhcCCCh--------HHHHHHHHHHHHH-hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeC
Confidence            33457778876554432211        2222222222222 245778999999999998887765   24568999999


Q ss_pred             ChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhc
Q 024797          116 AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL  195 (262)
Q Consensus       116 s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~  195 (262)
                      |+.|++.|+++....        +...+++++++|+.+++.       +.+|+|+++.++||+  +.++...++++++++
T Consensus        91 S~~ml~~A~~~~~~~--------~~~~~v~~~~~d~~~~~~-------~~~D~vv~~~~l~~l--~~~~~~~~l~~i~~~  153 (247)
T PRK15451         91 SPAMIERCRRHIDAY--------KAPTPVDVIEGDIRDIAI-------ENASMVVLNFTLQFL--EPSERQALLDKIYQG  153 (247)
T ss_pred             CHHHHHHHHHHHHhc--------CCCCCeEEEeCChhhCCC-------CCCCEEehhhHHHhC--CHHHHHHHHHHHHHh
Confidence            999999999988632        223468999999987754       358999999999988  566788999999999


Q ss_pred             cCCCcEEEEEe
Q 024797          196 LRPGGTFIGTM  206 (262)
Q Consensus       196 L~~gG~li~~~  206 (262)
                      |+|||.+++..
T Consensus       154 LkpGG~l~l~e  164 (247)
T PRK15451        154 LNPGGALVLSE  164 (247)
T ss_pred             cCCCCEEEEEE
Confidence            99999998864

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.77  E-value=9.5e-18  Score=139.33  Aligned_cols=117  Identities=18%  Similarity=0.234  Sum_probs=97.5

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ...++..+...++.+|||+|||+|..+..++.....+|+|+|+|+.|++.|+++...           ..++.+.++|+.
T Consensus        41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~-----------~~~i~~~~~D~~  109 (263)
T PTZ00098         41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD-----------KNKIEFEANDIL  109 (263)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc-----------CCceEEEECCcc
Confidence            445666666778899999999999988887654445899999999999999987652           245899999998


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ..++     ++++||+|++..+++|+  +..++..++++++++|+|||.++++.+
T Consensus       110 ~~~~-----~~~~FD~V~s~~~l~h~--~~~d~~~~l~~i~r~LkPGG~lvi~d~  157 (263)
T PTZ00098        110 KKDF-----PENTFDMIYSRDAILHL--SYADKKKLFEKCYKWLKPNGILLITDY  157 (263)
T ss_pred             cCCC-----CCCCeEEEEEhhhHHhC--CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            7776     67899999999888887  556789999999999999999998754

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.77  E-value=7.1e-18  Score=128.97  Aligned_cols=109  Identities=30%  Similarity=0.491  Sum_probs=91.0

Q ss_pred             cCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .++.+|||+|||+|.++..++.  .+..+++|+|+|++|++.|++++.+.+        .. +++|.++|+.+++..  .
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~--------~~-ni~~~~~d~~~l~~~--~   70 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELG--------LD-NIEFIQGDIEDLPQE--L   70 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTT--------ST-TEEEEESBTTCGCGC--S
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccc--------cc-ccceEEeehhccccc--c
Confidence            3578999999999999999984  345689999999999999999876432        22 699999999986620  0


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                       + +.||+|++..+++|+    .++..+++++.+.|++||.+++..+.
T Consensus        71 -~-~~~D~I~~~~~l~~~----~~~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   71 -E-EKFDIIISNGVLHHF----PDPEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             -S-TTEEEEEEESTGGGT----SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             -C-CCeeEEEEcCchhhc----cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence             2 799999999999988    67889999999999999999988876

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.75  E-value=1.6e-17  Score=132.32  Aligned_cols=105  Identities=16%  Similarity=0.173  Sum_probs=86.6

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|..+..+++.+ .+|+|+|+|+.|++.+++.....+.         .++++.+.|+.++++     
T Consensus        28 ~~~~~~vLDiGcG~G~~a~~La~~g-~~V~gvD~S~~~i~~a~~~~~~~~~---------~~v~~~~~d~~~~~~-----   92 (197)
T PRK11207         28 VVKPGKTLDLGCGNGRNSLYLAANG-FDVTAWDKNPMSIANLERIKAAENL---------DNLHTAVVDLNNLTF-----   92 (197)
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHCC-CEEEEEeCCHHHHHHHHHHHHHcCC---------CcceEEecChhhCCc-----
Confidence            4467899999999999999887653 4899999999999999987763221         247888899877654     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                       +++||+|++..+++|+  +.++...+++++.++|+|||.+++
T Consensus        93 -~~~fD~I~~~~~~~~~--~~~~~~~~l~~i~~~LkpgG~~~~  132 (197)
T PRK11207         93 -DGEYDFILSTVVLMFL--EAKTIPGLIANMQRCTKPGGYNLI  132 (197)
T ss_pred             -CCCcCEEEEecchhhC--CHHHHHHHHHHHHHHcCCCcEEEE
Confidence             4679999999999887  667889999999999999999544

>TIGR00740 methyltransferase, putative

Probab=99.74  E-value=6e-17  Score=133.01  Aligned_cols=109  Identities=18%  Similarity=0.360  Sum_probs=90.5

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc---CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ..++.+|||+|||+|..+..+++.   +..+++|+|+|+.|++.|++++...        ....++.++++|+..+++  
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~--  120 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY--------HSEIPVEILCNDIRHVEI--  120 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc--------CCCCCeEEEECChhhCCC--
Confidence            357789999999999988888763   4568999999999999999987632        123458999999988764  


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                           ..+|+|++..++||+  ..++...++++++++|+|||.+++..+
T Consensus       121 -----~~~d~v~~~~~l~~~--~~~~~~~~l~~i~~~LkpgG~l~i~d~  162 (239)
T TIGR00740       121 -----KNASMVILNFTLQFL--PPEDRIALLTKIYEGLNPNGVLVLSEK  162 (239)
T ss_pred             -----CCCCEEeeecchhhC--CHHHHHHHHHHHHHhcCCCeEEEEeec
Confidence                 358999999999988  666789999999999999999998753

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.74  E-value=1.5e-17  Score=137.83  Aligned_cols=108  Identities=19%  Similarity=0.258  Sum_probs=89.4

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      .++..+...++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|++.                ++.++++|+.+
T Consensus        20 ~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~----------------~~~~~~~d~~~   83 (255)
T PRK14103         20 DLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER----------------GVDARTGDVRD   83 (255)
T ss_pred             HHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc----------------CCcEEEcChhh
Confidence            3455555567889999999999998888764 345899999999999999753                27789999876


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ++      ++++||+|+++.++||+    .++..++++++++|+|||.+++.++.
T Consensus        84 ~~------~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~~  128 (255)
T PRK14103         84 WK------PKPDTDVVVSNAALQWV----PEHADLLVRWVDELAPGSWIAVQVPG  128 (255)
T ss_pred             CC------CCCCceEEEEehhhhhC----CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence            63      45789999999999998    56788999999999999999998753

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.73  E-value=1.4e-17  Score=118.44  Aligned_cols=96  Identities=27%  Similarity=0.521  Sum_probs=79.2

Q ss_pred             EEEecCCCCcchHHHHhcC----CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           88 VLDLACGKGGDLIKWDKAK----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        88 vLDiGcG~G~~~~~l~~~~----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      |||+|||+|..+..++...    ..+++|+|+|++|++.++++....          ..+++++++|+.+++.     ..
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~----------~~~~~~~~~D~~~l~~-----~~   65 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED----------GPKVRFVQADARDLPF-----SD   65 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT----------TTTSEEEESCTTCHHH-----HS
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc----------CCceEEEECCHhHCcc-----cC
Confidence            7999999999999887642    368999999999999999987631          2369999999999876     57


Q ss_pred             CCeeEEEEcc-cccccCCCHHHHHHHHHHHHhccCCCc
Q 024797          164 APFDICSCQF-AMHYSWSTEARARRALANVSALLRPGG  200 (262)
Q Consensus       164 ~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~L~~gG  200 (262)
                      ++||+|++.+ +++|+  +.+....+++++.++|+|||
T Consensus        66 ~~~D~v~~~~~~~~~~--~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   66 GKFDLVVCSGLSLHHL--SPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSEEEEEE-TTGGGGS--SHHHHHHHHHHHHHTEEEEE
T ss_pred             CCeeEEEEcCCccCCC--CHHHHHHHHHHHHHHhCCCC
Confidence            8999999955 49998  88899999999999999998

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.73  E-value=3.4e-17  Score=136.05  Aligned_cols=111  Identities=20%  Similarity=0.361  Sum_probs=91.8

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +.++..+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++..              ++.++.+|+.
T Consensus        21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~--------------~~~~~~~d~~   86 (258)
T PRK01683         21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLP--------------DCQFVEADIA   86 (258)
T ss_pred             HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCC--------------CCeEEECchh
Confidence            33455555567889999999999999888764 45689999999999999998754              3788999987


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .+.      ++++||+|+++.+++|+    .+...+++++.++|+|||.+++.+++
T Consensus        87 ~~~------~~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~~~~~~~~  132 (258)
T PRK01683         87 SWQ------PPQALDLIFANASLQWL----PDHLELFPRLVSLLAPGGVLAVQMPD  132 (258)
T ss_pred             ccC------CCCCccEEEEccChhhC----CCHHHHHHHHHHhcCCCcEEEEECCC
Confidence            654      35689999999999988    56788999999999999999998754

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.73  E-value=2.6e-17  Score=139.96  Aligned_cols=103  Identities=16%  Similarity=0.151  Sum_probs=86.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|..+..+++. +...++++|+|++|++.|+++..            ..++.++.+|+.++++     
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~------------~~~i~~i~gD~e~lp~-----  174 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP------------LKECKIIEGDAEDLPF-----  174 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh------------ccCCeEEeccHHhCCC-----
Confidence            46789999999999988877653 34589999999999999998754            2347889999988876     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ++++||+|++..+++|+    .+...+++++.++|+|||.+++..
T Consensus       175 ~~~sFDvVIs~~~L~~~----~d~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        175 PTDYADRYVSAGSIEYW----PDPQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             CCCceeEEEEcChhhhC----CCHHHHHHHHHHhcCCCcEEEEEE
Confidence            67899999999999987    456789999999999999987754

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.72  E-value=3.3e-17  Score=134.31  Aligned_cols=115  Identities=22%  Similarity=0.284  Sum_probs=99.4

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ++.++..+.+.+|.+|||||||.|.++..+++.-..+|+|+++|+++.+.+++++...        ++..+++++..|..
T Consensus        61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~--------gl~~~v~v~l~d~r  132 (283)
T COG2230          61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAAR--------GLEDNVEVRLQDYR  132 (283)
T ss_pred             HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHc--------CCCcccEEEecccc
Confidence            4455666778899999999999999999998876669999999999999999988754        34557999999988


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ++.        ++||-|++...++|+  ..+....+++.+.++|+|||.+++-
T Consensus       133 d~~--------e~fDrIvSvgmfEhv--g~~~~~~ff~~~~~~L~~~G~~llh  175 (283)
T COG2230         133 DFE--------EPFDRIVSVGMFEHV--GKENYDDFFKKVYALLKPGGRMLLH  175 (283)
T ss_pred             ccc--------cccceeeehhhHHHh--CcccHHHHHHHHHhhcCCCceEEEE
Confidence            764        449999999999999  7788999999999999999998654

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.72  E-value=9.2e-17  Score=127.72  Aligned_cols=106  Identities=22%  Similarity=0.242  Sum_probs=84.7

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...++.+|||+|||+|..+..+++.+ ..|+|+|+|+.|++.++++....          ..++.+.++|+...++    
T Consensus        27 ~~~~~~~vLDiGcG~G~~a~~la~~g-~~V~~iD~s~~~l~~a~~~~~~~----------~~~v~~~~~d~~~~~~----   91 (195)
T TIGR00477        27 KTVAPCKTLDLGCGQGRNSLYLSLAG-YDVRAWDHNPASIASVLDMKARE----------NLPLRTDAYDINAAAL----   91 (195)
T ss_pred             ccCCCCcEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHHh----------CCCceeEeccchhccc----
Confidence            34456799999999999999887654 48999999999999998876521          1236677788765543    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        +++||+|++..+++|+  +.++...+++++.++|+|||++++.
T Consensus        92 --~~~fD~I~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~lli~  132 (195)
T TIGR00477        92 --NEDYDFIFSTVVFMFL--QAGRVPEIIANMQAHTRPGGYNLIV  132 (195)
T ss_pred             --cCCCCEEEEecccccC--CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence              3679999999999887  6677889999999999999985543

Part of a tellurite-reducing operon tehA and tehB

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.71  E-value=7.8e-17  Score=133.85  Aligned_cols=116  Identities=22%  Similarity=0.264  Sum_probs=89.7

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ++.++..+.+.+|.+|||||||.|.++..+++....+|+|+.+|+++.+.+++++.+.        ++..++++.++|..
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~--------gl~~~v~v~~~D~~  122 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREA--------GLEDRVEVRLQDYR  122 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCS--------TSSSTEEEEES-GG
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhc--------CCCCceEEEEeecc
Confidence            3445556677899999999999999999998764458999999999999999998854        34567999999987


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +++        .+||.|++..+++|+  ..++...+++++.++|+|||.+++..
T Consensus       123 ~~~--------~~fD~IvSi~~~Ehv--g~~~~~~~f~~~~~~LkpgG~~~lq~  166 (273)
T PF02353_consen  123 DLP--------GKFDRIVSIEMFEHV--GRKNYPAFFRKISRLLKPGGRLVLQT  166 (273)
T ss_dssp             G-----------S-SEEEEESEGGGT--CGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred             ccC--------CCCCEEEEEechhhc--ChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence            653        499999999999999  66788999999999999999998653

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.71  E-value=2.7e-17  Score=131.31  Aligned_cols=111  Identities=21%  Similarity=0.283  Sum_probs=88.8

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      |.+|||+|||+|.++..|++.+ ..|+|+|++++|++.|++........+   .....++.+.+.+++...        +
T Consensus        90 g~~ilDvGCGgGLLSepLArlg-a~V~GID~s~~~V~vA~~h~~~dP~~~---~~~~y~l~~~~~~~E~~~--------~  157 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLG-AQVTGIDASDDMVEVANEHKKMDPVLE---GAIAYRLEYEDTDVEGLT--------G  157 (282)
T ss_pred             CceEEEeccCccccchhhHhhC-CeeEeecccHHHHHHHHHhhhcCchhc---cccceeeehhhcchhhcc--------c
Confidence            4789999999999999998766 489999999999999999843211110   111224667777776653        5


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      .||+|+|..+++|+    +++..++..+.+.|+|||.+++++-+...
T Consensus       158 ~fDaVvcsevleHV----~dp~~~l~~l~~~lkP~G~lfittinrt~  200 (282)
T KOG1270|consen  158 KFDAVVCSEVLEHV----KDPQEFLNCLSALLKPNGRLFITTINRTI  200 (282)
T ss_pred             ccceeeeHHHHHHH----hCHHHHHHHHHHHhCCCCceEeeehhhhH
Confidence            59999999999999    89999999999999999999999877653

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.70  E-value=1.2e-16  Score=136.06  Aligned_cols=110  Identities=20%  Similarity=0.172  Sum_probs=88.2

Q ss_pred             HHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      .+...++.+|||+|||+|.++..++..+...|+|+|+|+.++.+++......        ....++.++.+|+.+++.  
T Consensus       117 ~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~--------~~~~~i~~~~~d~e~lp~--  186 (322)
T PRK15068        117 HLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLL--------GNDQRAHLLPLGIEQLPA--  186 (322)
T ss_pred             hhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhc--------CCCCCeEEEeCCHHHCCC--
Confidence            3334567899999999999999888766667999999999987655432210        113468999999988764  


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                          +++||+|++..+++|.    .++..++++++++|+|||.+++++
T Consensus       187 ----~~~FD~V~s~~vl~H~----~dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        187 ----LKAFDTVFSMGVLYHR----RSPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             ----cCCcCEEEECChhhcc----CCHHHHHHHHHHhcCCCcEEEEEE
Confidence                5789999999999998    567889999999999999999874

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.70  E-value=1.5e-16  Score=143.27  Aligned_cols=113  Identities=21%  Similarity=0.254  Sum_probs=93.5

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ++..+...++.+|||+|||+|..+..++.....+|+|+|+|+.+++.|+++..          ....++.+.++|+...+
T Consensus       258 l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~----------~~~~~v~~~~~d~~~~~  327 (475)
T PLN02336        258 FVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI----------GRKCSVEFEVADCTKKT  327 (475)
T ss_pred             HHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh----------cCCCceEEEEcCcccCC
Confidence            44444456778999999999998888876545589999999999999988764          22346899999998877


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +     ++++||+|++..+++|+    .++..++++++++|+|||.++++.+
T Consensus       328 ~-----~~~~fD~I~s~~~l~h~----~d~~~~l~~~~r~LkpgG~l~i~~~  370 (475)
T PLN02336        328 Y-----PDNSFDVIYSRDTILHI----QDKPALFRSFFKWLKPGGKVLISDY  370 (475)
T ss_pred             C-----CCCCEEEEEECCccccc----CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            6     56889999999999998    5678999999999999999998753

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.70  E-value=5.3e-16  Score=125.89  Aligned_cols=140  Identities=21%  Similarity=0.406  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCC--CeEEEEe
Q 024797           37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGID  114 (262)
Q Consensus        37 ~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD  114 (262)
                      .++|+.++.+|+..... .         .......|...++......++.+|||+|||+|..+..+++...  .+++|+|
T Consensus         2 ~~~~~~~~~~y~~~~~~-~---------~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD   71 (223)
T TIGR01934         2 QEMFDRIAPKYDLLNDL-L---------SFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVD   71 (223)
T ss_pred             HhHHHHHHhhhhHHHHH-H---------hcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEE
Confidence            35889999999864221 1         1223345666666666666788999999999999888876543  4899999


Q ss_pred             CChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHh
Q 024797          115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA  194 (262)
Q Consensus       115 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~  194 (262)
                      +++.+++.++++..           ...++.+..+|+.+.+.     +.++||+|++..+++++    .++..+++++.+
T Consensus        72 ~~~~~~~~~~~~~~-----------~~~~i~~~~~d~~~~~~-----~~~~~D~i~~~~~~~~~----~~~~~~l~~~~~  131 (223)
T TIGR01934        72 FSSEMLEVAKKKSE-----------LPLNIEFIQADAEALPF-----EDNSFDAVTIAFGLRNV----TDIQKALREMYR  131 (223)
T ss_pred             CCHHHHHHHHHHhc-----------cCCCceEEecchhcCCC-----CCCcEEEEEEeeeeCCc----ccHHHHHHHHHH
Confidence            99999999988764           13458899999988765     56789999999999877    667899999999


Q ss_pred             ccCCCcEEEEEe
Q 024797          195 LLRPGGTFIGTM  206 (262)
Q Consensus       195 ~L~~gG~li~~~  206 (262)
                      +|+|||.+++..
T Consensus       132 ~L~~gG~l~~~~  143 (223)
T TIGR01934       132 VLKPGGRLVILE  143 (223)
T ss_pred             HcCCCcEEEEEE
Confidence            999999998754

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00452 methyltransferase, putative

Probab=99.70  E-value=1.2e-16  Score=134.79  Aligned_cols=113  Identities=19%  Similarity=0.094  Sum_probs=87.7

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ++..+...++.+|||+|||+|.++..++..+...|+|+|+|+.|+.+++......        ....++.+..+++.+++
T Consensus       113 ~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~--------~~~~~v~~~~~~ie~lp  184 (314)
T TIGR00452       113 VLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLL--------DNDKRAILEPLGIEQLH  184 (314)
T ss_pred             HHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHh--------ccCCCeEEEECCHHHCC
Confidence            3444445678899999999999888887666668999999999998754321100        01235778888888776


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .      ..+||+|++.++++|.    .++..++++++++|+|||.|++.+
T Consensus       185 ~------~~~FD~V~s~gvL~H~----~dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       185 E------LYAFDTVFSMGVLYHR----KSPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             C------CCCcCEEEEcchhhcc----CCHHHHHHHHHHhcCCCCEEEEEE
Confidence            3      3589999999999998    667889999999999999999864

Known examples to date are restricted to the proteobacteria.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.70  E-value=2.1e-16  Score=129.61  Aligned_cols=105  Identities=25%  Similarity=0.471  Sum_probs=89.0

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..+.+|||+|||+|.++..++.. ...+++|+|+|+.+++.++++..             .++.++++|+.+.++     
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-------------~~~~~~~~d~~~~~~-----   94 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-------------ENVQFICGDAEKLPL-----   94 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-------------CCCeEEecchhhCCC-----
Confidence            34578999999999998888764 34469999999999999988754             257899999988775     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ++++||+|++..+++|.    .+...++.++.++|+|||.+++.++..
T Consensus        95 ~~~~fD~vi~~~~l~~~----~~~~~~l~~~~~~L~~~G~l~~~~~~~  138 (240)
T TIGR02072        95 EDSSFDLIVSNLALQWC----DDLSQALSELARVLKPGGLLAFSTFGP  138 (240)
T ss_pred             CCCceeEEEEhhhhhhc----cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            57889999999999987    667889999999999999999987654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.70  E-value=3.5e-16  Score=124.94  Aligned_cols=100  Identities=14%  Similarity=0.181  Sum_probs=82.8

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|..+..++.. +...++|+|+|++|++.|+++..              ++.+.++|+.+ ++     
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~--------------~~~~~~~d~~~-~~-----  101 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP--------------NINIIQGSLFD-PF-----  101 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC--------------CCcEEEeeccC-CC-----
Confidence            46778999999999999888764 45689999999999999998654              26778888877 54     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ++++||+|++..+++|+  ++++..++++++.+++  ++.+++..
T Consensus       102 ~~~sfD~V~~~~vL~hl--~p~~~~~~l~el~r~~--~~~v~i~e  142 (204)
T TIGR03587       102 KDNFFDLVLTKGVLIHI--NPDNLPTAYRELYRCS--NRYILIAE  142 (204)
T ss_pred             CCCCEEEEEECChhhhC--CHHHHHHHHHHHHhhc--CcEEEEEE
Confidence            67899999999999998  6778899999999998  45665543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.70  E-value=4.2e-16  Score=127.83  Aligned_cols=146  Identities=27%  Similarity=0.417  Sum_probs=111.0

Q ss_pred             cchhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcC--CCeEE
Q 024797           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYV  111 (262)
Q Consensus        34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~  111 (262)
                      ...+++|+.++.+|+... ...         .......|...++..+...++.+|||+|||+|.++..++...  ..+++
T Consensus        11 ~~~~~~~~~~~~~y~~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~   80 (239)
T PRK00216         11 EKVAEMFDSIAPKYDLMN-DLL---------SFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVV   80 (239)
T ss_pred             HHHHHHHHHhhhhHHHHH-HHH---------hcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEE
Confidence            345679999999997421 100         012233456666666656677899999999999988887654  46899


Q ss_pred             EEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHH
Q 024797          112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN  191 (262)
Q Consensus       112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~  191 (262)
                      |+|+++.+++.++++....        ....++.+..+|+.+.+.     +.+.||+|++..++++.    .+...++..
T Consensus        81 ~~D~s~~~~~~a~~~~~~~--------~~~~~~~~~~~d~~~~~~-----~~~~~D~I~~~~~l~~~----~~~~~~l~~  143 (239)
T PRK00216         81 GLDFSEGMLAVGREKLRDL--------GLSGNVEFVQGDAEALPF-----PDNSFDAVTIAFGLRNV----PDIDKALRE  143 (239)
T ss_pred             EEeCCHHHHHHHHHhhccc--------ccccCeEEEecccccCCC-----CCCCccEEEEecccccC----CCHHHHHHH
Confidence            9999999999999987521        223468899999987764     56789999999999887    567889999


Q ss_pred             HHhccCCCcEEEEEe
Q 024797          192 VSALLRPGGTFIGTM  206 (262)
Q Consensus       192 ~~~~L~~gG~li~~~  206 (262)
                      +.++|+|||.+++..
T Consensus       144 ~~~~L~~gG~li~~~  158 (239)
T PRK00216        144 MYRVLKPGGRLVILE  158 (239)
T ss_pred             HHHhccCCcEEEEEE
Confidence            999999999987753

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.69  E-value=8.4e-17  Score=123.85  Aligned_cols=100  Identities=27%  Similarity=0.435  Sum_probs=80.7

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||.|.++..+...+. +++|+|+++.+++.  ..                 +.....+......     
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--~~-----------------~~~~~~~~~~~~~-----   74 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--RN-----------------VVFDNFDAQDPPF-----   74 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--TT-----------------SEEEEEECHTHHC-----
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--hh-----------------hhhhhhhhhhhhc-----
Confidence            36788999999999998888865555 89999999999988  11                 2233333333333     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      ++++||+|+++.+++|+    +++..+|+++.++|+|||++++++++..
T Consensus        75 ~~~~fD~i~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~~~~~~~~  119 (161)
T PF13489_consen   75 PDGSFDLIICNDVLEHL----PDPEEFLKELSRLLKPGGYLVISDPNRD  119 (161)
T ss_dssp             HSSSEEEEEEESSGGGS----SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred             cccchhhHhhHHHHhhc----ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence            57899999999999999    5799999999999999999999998753

...

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.69  E-value=4.2e-16  Score=120.00  Aligned_cols=106  Identities=21%  Similarity=0.300  Sum_probs=89.5

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeE-EEeCcccccccccccCCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR-LICGDCYEVHLDKVLADD  163 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~~~  163 (262)
                      ...|||+|||+|....++--.+..+|+++|+++.|-+.+.+.+.+.         -..++. |++++.++++..    ++
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~---------k~~~~~~fvva~ge~l~~l----~d  143 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK---------KPLQVERFVVADGENLPQL----AD  143 (252)
T ss_pred             ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc---------cCcceEEEEeechhcCccc----cc
Confidence            3468999999999888774346668999999999999999988753         244566 999999998832    78


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +++|+|++.+++...    +++.+.|+++.++|+|||++++.-+
T Consensus       144 ~s~DtVV~TlvLCSv----e~~~k~L~e~~rlLRpgG~iifiEH  183 (252)
T KOG4300|consen  144 GSYDTVVCTLVLCSV----EDPVKQLNEVRRLLRPGGRIIFIEH  183 (252)
T ss_pred             CCeeeEEEEEEEecc----CCHHHHHHHHHHhcCCCcEEEEEec
Confidence            999999999999855    8999999999999999999988653

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.68  E-value=7.2e-16  Score=119.15  Aligned_cols=108  Identities=22%  Similarity=0.296  Sum_probs=84.4

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ...-.++||+|||.|.++..|+.. +..++++|+|+.+++.|+++...           ..+|.+.++|+.+..      
T Consensus        41 ~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~-----------~~~V~~~~~dvp~~~------  102 (201)
T PF05401_consen   41 RRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG-----------LPHVEWIQADVPEFW------  102 (201)
T ss_dssp             TSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT------------SSEEEEES-TTT--------
T ss_pred             ccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC-----------CCCeEEEECcCCCCC------
Confidence            344578999999999999998654 46899999999999999999873           356999999997753      


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      |+++||+|++..+++|+ .+.++...++..+.+.|+|||.||+....
T Consensus       103 P~~~FDLIV~SEVlYYL-~~~~~L~~~l~~l~~~L~pgG~LV~g~~r  148 (201)
T PF05401_consen  103 PEGRFDLIVLSEVLYYL-DDAEDLRAALDRLVAALAPGGHLVFGHAR  148 (201)
T ss_dssp             -SS-EEEEEEES-GGGS-SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred             CCCCeeEEEEehHhHcC-CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence            68999999999999887 44678999999999999999999998653

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.67  E-value=9.4e-18  Score=118.84  Aligned_cols=98  Identities=24%  Similarity=0.355  Sum_probs=61.7

Q ss_pred             EEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCee
Q 024797           89 LDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD  167 (262)
Q Consensus        89 LDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  167 (262)
                      ||+|||+|.++..++.. +..+++|+|+|+.|++.+++++....         ..+......+..+....   ...++||
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~---------~~~~~~~~~~~~~~~~~---~~~~~fD   68 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELG---------NDNFERLRFDVLDLFDY---DPPESFD   68 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT------------EEEEE--SSS---C---CC----S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC---------CcceeEEEeecCChhhc---ccccccc
Confidence            79999999999998775 55579999999999998888876422         11223333332222110   0236999


Q ss_pred             EEEEcccccccCCCHHHHHHHHHHHHhccCCCcEE
Q 024797          168 ICSCQFAMHYSWSTEARARRALANVSALLRPGGTF  202 (262)
Q Consensus       168 ~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~l  202 (262)
                      +|++.+++||+    +++..++++++++|+|||.|
T Consensus        69 ~V~~~~vl~~l----~~~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   69 LVVASNVLHHL----EDIEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             EEEEE-TTS------S-HHHHHHHHTTT-TSS-EE
T ss_pred             eehhhhhHhhh----hhHHHHHHHHHHHcCCCCCC
Confidence            99999999998    77889999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.67  E-value=9.8e-16  Score=129.04  Aligned_cols=103  Identities=17%  Similarity=0.260  Sum_probs=85.6

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ++.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.++++....          ..++.+.+.|+.....      +
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g-~~V~avD~s~~ai~~~~~~~~~~----------~l~v~~~~~D~~~~~~------~  182 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLG-FDVTAVDINQQSLENLQEIAEKE----------NLNIRTGLYDINSASI------Q  182 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHc----------CCceEEEEechhcccc------c
Confidence            45699999999999999887654 48999999999999999887632          2257888888876543      5


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ++||+|++..+++|+  +.++...+++++.++|+|||++++.
T Consensus       183 ~~fD~I~~~~vl~~l--~~~~~~~~l~~~~~~LkpgG~~l~v  222 (287)
T PRK12335        183 EEYDFILSTVVLMFL--NRERIPAIIKNMQEHTNPGGYNLIV  222 (287)
T ss_pred             CCccEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            789999999999987  6678899999999999999996654

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.67  E-value=7.7e-16  Score=120.30  Aligned_cols=106  Identities=16%  Similarity=0.274  Sum_probs=84.9

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...++.++||+|||.|+.+..+++.+. .|+++|.|+.+++.+++...+.          ...++..+.|+.+..+    
T Consensus        27 ~~~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~----------~l~i~~~~~Dl~~~~~----   91 (192)
T PF03848_consen   27 PLLKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEE----------GLDIRTRVADLNDFDF----   91 (192)
T ss_dssp             TTS-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHT----------T-TEEEEE-BGCCBS-----
T ss_pred             hhcCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhc----------CceeEEEEecchhccc----
Confidence            344678999999999999999987776 7999999999999988776532          3348889999988765    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        ++.||+|++..+++|+  ..+....+++.+.+.++|||++++.
T Consensus        92 --~~~yD~I~st~v~~fL--~~~~~~~i~~~m~~~~~pGG~~li~  132 (192)
T PF03848_consen   92 --PEEYDFIVSTVVFMFL--QRELRPQIIENMKAATKPGGYNLIV  132 (192)
T ss_dssp             --TTTEEEEEEESSGGGS---GGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             --cCCcCEEEEEEEeccC--CHHHHHHHHHHHHhhcCCcEEEEEE
Confidence              4789999999999988  6677889999999999999998774

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.66  E-value=2.2e-16  Score=122.44  Aligned_cols=109  Identities=22%  Similarity=0.335  Sum_probs=95.5

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ++.++...+..+|.|+|||+|..+..+++. +...++|+|.|++|++.|+++..              +++|..+|+.++
T Consensus        22 Lla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp--------------~~~f~~aDl~~w   87 (257)
T COG4106          22 LLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLP--------------DATFEEADLRTW   87 (257)
T ss_pred             HHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCC--------------CCceecccHhhc
Confidence            555556677889999999999888888764 55679999999999999998866              489999999887


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .      ++..+|+++++.+++++    ++..++|.++...|.|||.|.+-+|+
T Consensus        88 ~------p~~~~dllfaNAvlqWl----pdH~~ll~rL~~~L~Pgg~LAVQmPd  131 (257)
T COG4106          88 K------PEQPTDLLFANAVLQWL----PDHPELLPRLVSQLAPGGVLAVQMPD  131 (257)
T ss_pred             C------CCCccchhhhhhhhhhc----cccHHHHHHHHHhhCCCceEEEECCC
Confidence            6      67889999999999998    77889999999999999999999985

>PRK06922 hypothetical protein; Provisional

Probab=99.66  E-value=1.1e-15  Score=137.69  Aligned_cols=109  Identities=22%  Similarity=0.361  Sum_probs=88.8

Q ss_pred             cCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--cccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKV  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~  159 (262)
                      .++.+|||+|||+|..+..+++ .+...++|+|+|+.|++.|+++....          ..++.++++|+.+++  +   
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~----------g~~ie~I~gDa~dLp~~f---  483 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNE----------GRSWNVIKGDAINLSSSF---  483 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc----------CCCeEEEEcchHhCcccc---
Confidence            3678999999999988877765 35568999999999999999876421          235788999988765  3   


Q ss_pred             cCCCCCeeEEEEcccccccCC---------CHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          160 LADDAPFDICSCQFAMHYSWS---------TEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~---------~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                        ++++||+|+++.++|+++.         +.++...+++++.++|||||.+++..
T Consensus       484 --edeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        484 --EKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             --CCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence              5789999999998886532         24678999999999999999999874

>PRK08317 hypothetical protein; Provisional

Probab=99.66  E-value=1.7e-15  Score=124.21  Aligned_cols=116  Identities=28%  Similarity=0.431  Sum_probs=94.5

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      ..++......++.+|||+|||+|.++..++..  +..+++|+|+|+.+++.++++..          ....++.+.++|+
T Consensus         9 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~----------~~~~~~~~~~~d~   78 (241)
T PRK08317          9 ARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA----------GLGPNVEFVRGDA   78 (241)
T ss_pred             HHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh----------CCCCceEEEeccc
Confidence            33445555678889999999999988888764  34689999999999999988733          1134688999998


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ...++     ++++||+|++..+++|+    .++..+++++.++|+|||.+++..++
T Consensus        79 ~~~~~-----~~~~~D~v~~~~~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~  126 (241)
T PRK08317         79 DGLPF-----PDGSFDAVRSDRVLQHL----EDPARALAEIARVLRPGGRVVVLDTD  126 (241)
T ss_pred             ccCCC-----CCCCceEEEEechhhcc----CCHHHHHHHHHHHhcCCcEEEEEecC
Confidence            87765     56899999999999988    56788999999999999999887653

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.66  E-value=7.3e-16  Score=127.93  Aligned_cols=115  Identities=17%  Similarity=0.220  Sum_probs=85.5

Q ss_pred             CCCeEEEecCCCCcc----hHHHHhc------CCCeEEEEeCChhHHHHHHHHhccC----ccc------ccc-------
Q 024797           84 RGDVVLDLACGKGGD----LIKWDKA------KIGYYVGIDIAEGSIEDCRTRYNGD----ADH------HQR-------  136 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~----~~~l~~~------~~~~v~gvD~s~~~~~~a~~~~~~~----~~~------~~~-------  136 (262)
                      ++.+|||+|||+|..    +..+++.      ...+|+|+|+|+.|++.|++..-..    +..      .+.       
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            457999999999974    3333321      1347999999999999999864210    000      000       


Q ss_pred             -ccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          137 -RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       137 -~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                       ......+|.|.++|+.+.+.     +.++||+|+|.++++|+  +.+...+++++++++|+|||+|++.
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~-----~~~~fD~I~crnvl~yf--~~~~~~~~l~~l~~~L~pGG~L~lg  241 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESP-----PLGDFDLIFCRNVLIYF--DEPTQRKLLNRFAEALKPGGYLFLG  241 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCC-----ccCCCCEEEechhHHhC--CHHHHHHHHHHHHHHhCCCeEEEEE
Confidence             00122468999999988764     57899999999999998  7778899999999999999999985

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.66  E-value=8.5e-16  Score=128.61  Aligned_cols=106  Identities=21%  Similarity=0.359  Sum_probs=87.3

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++.+|||+|||+|..+..+++.  ..++|+|+|+|+.|++.|+++....+         ..+++++++|+.++++   
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g---------~~~v~~~~~d~~~l~~---  142 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAG---------YTNVEFRLGEIEALPV---  142 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcC---------CCCEEEEEcchhhCCC---
Confidence            467899999999999876655542  34579999999999999999876322         1358899999988776   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        +++.||+|+++.+++|.    .+...+++++.++|+|||++++.
T Consensus       143 --~~~~fD~Vi~~~v~~~~----~d~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        143 --ADNSVDVIISNCVINLS----PDKERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             --CCCceeEEEEcCcccCC----CCHHHHHHHHHHHcCCCcEEEEE
Confidence              57799999999999876    45678999999999999999885

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.66  E-value=2.6e-15  Score=120.56  Aligned_cols=125  Identities=22%  Similarity=0.225  Sum_probs=90.2

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCcc----ccccccCCCCCeEEEe
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDAD----HHQRRKKFSFPARLIC  148 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~----~~~~~~~~~~~v~~~~  148 (262)
                      +...+..+...++.+|||+|||.|+.+..++..+. .|+|+|+|+.+++.+.+.......    ++.+. ....++++.+
T Consensus        23 l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~  100 (213)
T TIGR03840        23 LVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTR-YRAGNIEIFC  100 (213)
T ss_pred             HHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceecccccee-eecCceEEEE
Confidence            33344433334678999999999999999986555 799999999999986443211000    00000 0134689999


Q ss_pred             CcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       149 ~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      +|+.+++..    ..+.||.|+-..+++|+  +++.+..+++.+.++|+|||.+++.
T Consensus       101 ~D~~~~~~~----~~~~fD~i~D~~~~~~l--~~~~R~~~~~~l~~lLkpgG~~ll~  151 (213)
T TIGR03840       101 GDFFALTAA----DLGPVDAVYDRAALIAL--PEEMRQRYAAHLLALLPPGARQLLI  151 (213)
T ss_pred             ccCCCCCcc----cCCCcCEEEechhhccC--CHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            999887631    13679999998888888  7888999999999999999975544

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.64  E-value=2.6e-15  Score=130.77  Aligned_cols=112  Identities=21%  Similarity=0.231  Sum_probs=91.4

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      ..++..+...++.+|||+|||+|.++..+++....+|+|+|+|+++++.|+++..            ...+++..+|...
T Consensus       157 ~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~------------~l~v~~~~~D~~~  224 (383)
T PRK11705        157 DLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA------------GLPVEIRLQDYRD  224 (383)
T ss_pred             HHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc------------cCeEEEEECchhh
Confidence            3344555567889999999999999988876544589999999999999999875            2237788888654


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +        +++||+|++..+++|+  +..+...+++++.++|+|||.+++...
T Consensus       225 l--------~~~fD~Ivs~~~~ehv--g~~~~~~~l~~i~r~LkpGG~lvl~~i  268 (383)
T PRK11705        225 L--------NGQFDRIVSVGMFEHV--GPKNYRTYFEVVRRCLKPDGLFLLHTI  268 (383)
T ss_pred             c--------CCCCCEEEEeCchhhC--ChHHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            3        3689999999999988  666778999999999999999998653

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.64  E-value=4.5e-15  Score=116.63  Aligned_cols=114  Identities=20%  Similarity=0.200  Sum_probs=87.2

Q ss_pred             ccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+|||+|..+..++. .+..+|+|+|+|+.|++.|+++....+        . .+++++++|+.+++     
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~--------l-~~i~~~~~d~~~~~-----  108 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELG--------L-KNVTVVHGRAEEFG-----  108 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcC--------C-CCEEEEeccHhhCC-----
Confidence            34588999999999998888765 455689999999999999999887432        2 23899999998764     


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC-hHHHHHHHhh
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD-ANVIIKKLRE  218 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~-~~~~~~~~~~  218 (262)
                       ..++||+|++...        .++..+++.+.++|+|||.+++.... ...-+..+.+
T Consensus       109 -~~~~fDlV~~~~~--------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~  158 (187)
T PRK00107        109 -QEEKFDVVTSRAV--------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPK  158 (187)
T ss_pred             -CCCCccEEEEccc--------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHH
Confidence             2568999998652        33577999999999999999887643 3333444444

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.64  E-value=2.4e-15  Score=116.04  Aligned_cols=110  Identities=25%  Similarity=0.315  Sum_probs=90.1

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||.|.++..+........+|+|++++.+..|.++-                +.++++|+.+-- .  .+
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG----------------v~Viq~Dld~gL-~--~f   71 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG----------------VSVIQGDLDEGL-A--DF   71 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC----------------CCEEECCHHHhH-h--hC
Confidence            4789999999999999998887766668999999999998887653                678999986531 1  13


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHh
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR  217 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~  217 (262)
                      ++++||.|+++.+++++    ..+..+|+++.|+   |...++++||...+-.++.
T Consensus        72 ~d~sFD~VIlsqtLQ~~----~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~R~~  120 (193)
T PF07021_consen   72 PDQSFDYVILSQTLQAV----RRPDEVLEEMLRV---GRRAIVSFPNFGHWRNRLQ  120 (193)
T ss_pred             CCCCccEEehHhHHHhH----hHHHHHHHHHHHh---cCeEEEEecChHHHHHHHH
Confidence            79999999999999988    7888898888655   7789999999977655443

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.64  E-value=2.8e-15  Score=119.80  Aligned_cols=117  Identities=21%  Similarity=0.274  Sum_probs=89.3

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc-cccc--ccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVH--LDK  158 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~--~~~  158 (262)
                      .++.+|||+|||+|..+..+++. +..+|+|+|+|+++++.|+++....        . ..++.++++|+ ..++  +  
T Consensus        39 ~~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~--------~-~~~v~~~~~d~~~~l~~~~--  107 (202)
T PRK00121         39 NDAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE--------G-LTNLRLLCGDAVEVLLDMF--  107 (202)
T ss_pred             CCCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc--------C-CCCEEEEecCHHHHHHHHc--
Confidence            46789999999999999888764 4457999999999999999887632        1 24589999998 6554  3  


Q ss_pred             ccCCCCCeeEEEEcccccccCC----CHHHHHHHHHHHHhccCCCcEEEEEeCChHHHH
Q 024797          159 VLADDAPFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMPDANVII  213 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~----~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~  213 (262)
                         ++++||+|++++...+...    .......++++++++|+|||.+++.+++.....
T Consensus       108 ---~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~  163 (202)
T PRK00121        108 ---PDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAE  163 (202)
T ss_pred             ---CccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHH
Confidence               5678999998765432200    001246789999999999999999988776543

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.63  E-value=3.7e-15  Score=124.66  Aligned_cols=110  Identities=19%  Similarity=0.358  Sum_probs=84.3

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-C---CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC  148 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~  148 (262)
                      +...+......+..+|||+|||+|.++..+++. +   ...++|+|+|+.|++.|+++..              ++.+.+
T Consensus        74 i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~--------------~~~~~~  139 (272)
T PRK11088         74 VANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYP--------------QVTFCV  139 (272)
T ss_pred             HHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCC--------------CCeEEE
Confidence            333343333345678999999999988887653 1   1369999999999999987643              378999


Q ss_pred             CcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       149 ~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      +|+.++++     ++++||+|++.+..           ..+.++.|+|+|||.+++.++....+
T Consensus       140 ~d~~~lp~-----~~~sfD~I~~~~~~-----------~~~~e~~rvLkpgG~li~~~p~~~~l  187 (272)
T PRK11088        140 ASSHRLPF-----ADQSLDAIIRIYAP-----------CKAEELARVVKPGGIVITVTPGPRHL  187 (272)
T ss_pred             eecccCCC-----cCCceeEEEEecCC-----------CCHHHHHhhccCCCEEEEEeCCCcch
Confidence            99988887     67899999976542           13578999999999999998877544

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.63  E-value=7.5e-15  Score=115.09  Aligned_cols=101  Identities=17%  Similarity=0.174  Sum_probs=80.5

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ++.+|||+|||+|..+..++.. +..+|+|+|+|+.|++.++++..+.+         ..+++++++|+.++.      .
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~---------~~~i~~i~~d~~~~~------~  106 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELG---------LNNVEIVNGRAEDFQ------H  106 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhC---------CCCeEEEecchhhcc------c
Confidence            5789999999999988887653 44689999999999999988776322         135899999998763      3


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .++||+|++.. ++       +...+++.+.++|+|||.+++...
T Consensus       107 ~~~fD~I~s~~-~~-------~~~~~~~~~~~~LkpgG~lvi~~~  143 (181)
T TIGR00138       107 EEQFDVITSRA-LA-------SLNVLLELTLNLLKVGGYFLAYKG  143 (181)
T ss_pred             cCCccEEEehh-hh-------CHHHHHHHHHHhcCCCCEEEEEcC
Confidence            57899999876 33       245678888999999999998764

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.63  E-value=1.1e-14  Score=106.99  Aligned_cols=112  Identities=21%  Similarity=0.161  Sum_probs=85.0

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ++..+...++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++....+         ..+++++.+|+...
T Consensus        11 ~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~~~~~~~~~~~~   81 (124)
T TIGR02469        11 TLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFG---------VSNIVIVEGDAPEA   81 (124)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhC---------CCceEEEecccccc
Confidence            444444556789999999999999988774 34689999999999999998876321         12478888887642


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ...    ..++||+|++.....       ....+++.+.+.|+|||.+++.+.
T Consensus        82 ~~~----~~~~~D~v~~~~~~~-------~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        82 LED----SLPEPDRVFIGGSGG-------LLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             Chh----hcCCCCEEEECCcch-------hHHHHHHHHHHHcCCCCEEEEEec
Confidence            110    246899999876543       346899999999999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.61  E-value=3.3e-15  Score=121.50  Aligned_cols=104  Identities=22%  Similarity=0.252  Sum_probs=86.3

Q ss_pred             CeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           86 DVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      .+|||+|||+|..+..+++. +..+++|+|+|+++++.+++++...        +...+++++.+|+...+.      .+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~--------gl~~~i~~~~~d~~~~~~------~~   66 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL--------GLQGRIRIFYRDSAKDPF------PD   66 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--------CCCcceEEEecccccCCC------CC
Confidence            37999999999988888764 3457999999999999999987632        334568999999866553      45


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +||+|++..+++|+    .+...+++++.++|+|||.+++..+
T Consensus        67 ~fD~I~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~  105 (224)
T smart00828       67 TYDLVFGFEVIHHI----KDKMDLFSNISRHLKDGGHLVLADF  105 (224)
T ss_pred             CCCEeehHHHHHhC----CCHHHHHHHHHHHcCCCCEEEEEEc
Confidence            89999999999988    5578999999999999999998753

>PLN03075 nicotianamine synthase; Provisional

Probab=99.61  E-value=8.9e-15  Score=121.43  Aligned_cols=111  Identities=11%  Similarity=0.035  Sum_probs=89.3

Q ss_pred             ccCCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ..++.+|+|||||.|.++..++.   .+.++++|+|+++++++.|++.+..       ..++..+++|.++|+.+...  
T Consensus       121 ~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~-------~~gL~~rV~F~~~Da~~~~~--  191 (296)
T PLN03075        121 NGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS-------DPDLSKRMFFHTADVMDVTE--  191 (296)
T ss_pred             cCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh-------ccCccCCcEEEECchhhccc--
Confidence            34778999999998866554433   3556899999999999999998842       12345679999999987532  


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                         ..+.||+|++. +++++  +.+++.++++++++.|+|||.+++...
T Consensus       192 ---~l~~FDlVF~~-ALi~~--dk~~k~~vL~~l~~~LkPGG~Lvlr~~  234 (296)
T PLN03075        192 ---SLKEYDVVFLA-ALVGM--DKEEKVKVIEHLGKHMAPGALLMLRSA  234 (296)
T ss_pred             ---ccCCcCEEEEe-ccccc--ccccHHHHHHHHHHhcCCCcEEEEecc
Confidence               24789999999 88887  667889999999999999999999863

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.61  E-value=4.7e-15  Score=112.04  Aligned_cols=137  Identities=23%  Similarity=0.324  Sum_probs=95.8

Q ss_pred             hhHHHHHHHHHHHHhccCC-CeEEEecCCCCcchHHHHhcCCC-eEEEEeCChhHHHHHHHHhccCccccccccCCCCCe
Q 024797           67 KKLNNWIKSVLVQLYARRG-DVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA  144 (262)
Q Consensus        67 ~~~~~~~~~~l~~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v  144 (262)
                      .++..|+..........+. .+|||+|||+|.++..|++.+.. ..+|+|.|+.+++.|+..+..        .+....+
T Consensus        49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~--------~~~~n~I  120 (227)
T KOG1271|consen   49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER--------DGFSNEI  120 (227)
T ss_pred             HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh--------cCCCcce
Confidence            3555666555443323333 49999999999999999876544 499999999999999877663        2334459


Q ss_pred             EEEeCcccccccccccCCCCCeeEEEEccccccc---CCC-HHHHHHHHHHHHhccCCCcEEEEEeCCh--HHHHHHH
Q 024797          145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS---WST-EARARRALANVSALLRPGGTFIGTMPDA--NVIIKKL  216 (262)
Q Consensus       145 ~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~~~-~~~~~~~l~~~~~~L~~gG~li~~~~~~--~~~~~~~  216 (262)
                      +|.+.|+....+     ..++||+|+--+++.-+   .+. ...+...+..+.+.|+|||+++|+..|.  +.+.+.+
T Consensus       121 ~f~q~DI~~~~~-----~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f  193 (227)
T KOG1271|consen  121 RFQQLDITDPDF-----LSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEF  193 (227)
T ss_pred             eEEEeeccCCcc-----cccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHH
Confidence            999999988655     56788888755543322   011 1223567888999999999999998775  3444443

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.60  E-value=2.2e-14  Score=123.37  Aligned_cols=164  Identities=14%  Similarity=0.134  Sum_probs=107.6

Q ss_pred             chhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEE
Q 024797           35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGI  113 (262)
Q Consensus        35 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gv  113 (262)
                      ..+..|+..++.|........-.........-.....-...++.......+..+||||||+|.++..+++. +...++|+
T Consensus        73 ~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGI  152 (390)
T PRK14121         73 ILKKALKIFSELFCADIISHNLAENSKKLSLKKPYILDIDNFLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGI  152 (390)
T ss_pred             HHHHHHHHHHHHhhccccccccccccccccccccccCCHHHHHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEE
Confidence            34578888888886333222100000000000000000122344444556779999999999999999874 45579999


Q ss_pred             eCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHH----HHHHH
Q 024797          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR----ARRAL  189 (262)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~----~~~~l  189 (262)
                      |+++.+++.|.+++...+         ..++.++++|+..+..  . .+++++|.|++++...|.  ....    ...++
T Consensus       153 EI~~~~i~~a~~ka~~~g---------L~NV~~i~~DA~~ll~--~-~~~~s~D~I~lnFPdPW~--KkrHRRlv~~~fL  218 (390)
T PRK14121        153 EIHTPSIEQVLKQIELLN---------LKNLLIINYDARLLLE--L-LPSNSVEKIFVHFPVPWD--KKPHRRVISEDFL  218 (390)
T ss_pred             ECCHHHHHHHHHHHHHcC---------CCcEEEEECCHHHhhh--h-CCCCceeEEEEeCCCCcc--ccchhhccHHHHH
Confidence            999999999998876432         2359999999875421  1 267899999987755432  1111    25789


Q ss_pred             HHHHhccCCCcEEEEEeCChHHH
Q 024797          190 ANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       190 ~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      .+++++|+|||.+.+.+.+.++.
T Consensus       219 ~e~~RvLkpGG~l~l~TD~~~y~  241 (390)
T PRK14121        219 NEALRVLKPGGTLELRTDSELYF  241 (390)
T ss_pred             HHHHHHcCCCcEEEEEEECHHHH
Confidence            99999999999999998877654

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.60  E-value=1.9e-14  Score=115.30  Aligned_cols=112  Identities=16%  Similarity=0.156  Sum_probs=85.6

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      ...++..+...++.+|||+|||+|..+..+++.  ..++|+++|+++++++.|++++...        +...+++++.+|
T Consensus        61 ~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~--------~~~~~v~~~~~d  132 (205)
T PRK13944         61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL--------GYWGVVEVYHGD  132 (205)
T ss_pred             HHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--------CCCCcEEEEECC
Confidence            344555555678899999999999988777653  2468999999999999999887632        223358899999


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +.+...     ..++||+|++..++.++    .      .++.+.|+|||+|++.+.
T Consensus       133 ~~~~~~-----~~~~fD~Ii~~~~~~~~----~------~~l~~~L~~gG~lvi~~~  174 (205)
T PRK13944        133 GKRGLE-----KHAPFDAIIVTAAASTI----P------SALVRQLKDGGVLVIPVE  174 (205)
T ss_pred             cccCCc-----cCCCccEEEEccCcchh----h------HHHHHhcCcCcEEEEEEc
Confidence            876432     35789999999888765    1      367899999999988653

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.60  E-value=1.1e-14  Score=115.78  Aligned_cols=119  Identities=18%  Similarity=0.301  Sum_probs=88.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      +...+|||+|||+|.++..++.. +...++|+|+++.+++.|+++....+        + .++.++++|+.+++..  ..
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~--------l-~ni~~i~~d~~~~~~~--~~   83 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLG--------L-KNLHVLCGDANELLDK--FF   83 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhC--------C-CCEEEEccCHHHHHHh--hC
Confidence            45679999999999999988764 45579999999999999998876322        1 3699999999765310  11


Q ss_pred             CCCCeeEEEEcccccccCCC----HHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          162 DDAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      +++.+|.|++++...+.-..    .-....++++++++|+|||.+++.+.+....
T Consensus        84 ~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~  138 (194)
T TIGR00091        84 PDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLF  138 (194)
T ss_pred             CCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHH
Confidence            45689999988754432000    0011578999999999999999998877644

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR03438 probable methyltransferase

Probab=99.60  E-value=6.9e-14  Score=118.47  Aligned_cols=156  Identities=17%  Similarity=0.159  Sum_probs=102.4

Q ss_pred             CCCccccccchhHHHHHHHH--HhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHH
Q 024797           26 GDSHFLEDESTKVFARKVAD--HYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWD  103 (262)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~a~--~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~  103 (262)
                      .+..++=++.-...|+++..  .|..  .+.+          ...+..+...+...+  .++.+|||+|||+|..+..++
T Consensus        17 lp~~~~yd~~G~~lf~~i~~~peYy~--tr~E----------~~il~~~~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll   82 (301)
T TIGR03438        17 LPPKYFYDARGSELFEQICELPEYYP--TRTE----------AAILERHADEIAAAT--GAGCELVELGSGSSRKTRLLL   82 (301)
T ss_pred             CCchhcccchHHHHHHHHHCCCcccc--HHHH----------HHHHHHHHHHHHHhh--CCCCeEEecCCCcchhHHHHH
Confidence            34445445566677887755  2321  1100          133334444443333  466799999999999999887


Q ss_pred             hcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-ccccccCCCCCeeEEEEcccccccCC
Q 024797          104 KAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKVLADDAPFDICSCQFAMHYSWS  180 (262)
Q Consensus       104 ~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~fD~V~~~~~l~~~~~  180 (262)
                      +..  ..+|+|+|+|++|++.|++++...        ....++.++++|+.+. ++.... ..+...++++...++++  
T Consensus        83 ~~l~~~~~~~~iDiS~~mL~~a~~~l~~~--------~p~~~v~~i~gD~~~~~~~~~~~-~~~~~~~~~~gs~~~~~--  151 (301)
T TIGR03438        83 DALRQPARYVPIDISADALKESAAALAAD--------YPQLEVHGICADFTQPLALPPEP-AAGRRLGFFPGSTIGNF--  151 (301)
T ss_pred             HhhccCCeEEEEECCHHHHHHHHHHHHhh--------CCCceEEEEEEcccchhhhhccc-ccCCeEEEEecccccCC--
Confidence            753  357999999999999999886521        1123477889998763 331000 01133344445567776  


Q ss_pred             CHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          181 TEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       181 ~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ++++...+|++++++|+|||.+++.+
T Consensus       152 ~~~e~~~~L~~i~~~L~pgG~~lig~  177 (301)
T TIGR03438       152 TPEEAVAFLRRIRQLLGPGGGLLIGV  177 (301)
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            67888999999999999999999875

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.60  E-value=2.5e-14  Score=115.28  Aligned_cols=127  Identities=19%  Similarity=0.193  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccc---cccccCCCCCeEEE
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH---HQRRKKFSFPARLI  147 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~~~~~~~~~v~~~  147 (262)
                      ..+...+..+...++.+|||+|||.|+.+..++..+. .|+|||+|+.+++.+.+........   .....-...++++.
T Consensus        24 ~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~  102 (218)
T PRK13255         24 PLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIY  102 (218)
T ss_pred             HHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEE
Confidence            3344444333445678999999999999999986555 7999999999999875322100000   00000113468999


Q ss_pred             eCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       148 ~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      ++|+.+++..    ..+.||+|+-..+++|+  +++.+..++..+.++|+|||.+++
T Consensus       103 ~~D~~~l~~~----~~~~fd~v~D~~~~~~l--~~~~R~~~~~~l~~lL~pgG~~~l  153 (218)
T PRK13255        103 CGDFFALTAA----DLADVDAVYDRAALIAL--PEEMRERYVQQLAALLPAGCRGLL  153 (218)
T ss_pred             ECcccCCCcc----cCCCeeEEEehHhHhhC--CHHHHHHHHHHHHHHcCCCCeEEE
Confidence            9999887531    23589999999999988  788899999999999999997443

>PRK06202 hypothetical protein; Provisional

Probab=99.59  E-value=1.9e-14  Score=117.61  Aligned_cols=103  Identities=20%  Similarity=0.199  Sum_probs=79.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-----CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      .++.+|||+|||+|.++..++..     ...+++|+|+|++|++.|+++..            ..++.+.+.++..++. 
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~------------~~~~~~~~~~~~~l~~-  125 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPR------------RPGVTFRQAVSDELVA-  125 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccc------------cCCCeEEEEecccccc-
Confidence            46679999999999988777541     23479999999999999988754            2236666776666554 


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                          ++++||+|+++.++||+  +.++...+++++.++++  |.+++..
T Consensus       126 ----~~~~fD~V~~~~~lhh~--~d~~~~~~l~~~~r~~~--~~~~i~d  166 (232)
T PRK06202        126 ----EGERFDVVTSNHFLHHL--DDAEVVRLLADSAALAR--RLVLHND  166 (232)
T ss_pred             ----cCCCccEEEECCeeecC--ChHHHHHHHHHHHHhcC--eeEEEec
Confidence                46799999999999998  55556789999999998  4455444

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.58  E-value=4.6e-14  Score=109.81  Aligned_cols=118  Identities=21%  Similarity=0.319  Sum_probs=86.7

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCC-eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ++..+...++.+|||+|||+|.++..+++.... +|+++|+++.+++.+++++...        +... ++++..|+.+.
T Consensus        23 L~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n--------~~~~-v~~~~~d~~~~   93 (170)
T PF05175_consen   23 LLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN--------GLEN-VEVVQSDLFEA   93 (170)
T ss_dssp             HHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT--------TCTT-EEEEESSTTTT
T ss_pred             HHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--------Cccc-ccccccccccc
Confidence            333344447889999999999999988775443 6999999999999999988732        2222 88999998664


Q ss_pred             ccccccCCCCCeeEEEEcccccccCC-CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .      ++++||+|+++-.++.-.. .......++..+.+.|+|||.+++....
T Consensus        94 ~------~~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~  142 (170)
T PF05175_consen   94 L------PDGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVINS  142 (170)
T ss_dssp             C------CTTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             c------cccceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence            2      4689999999876653311 1235788999999999999999776543

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.58  E-value=1.6e-14  Score=130.06  Aligned_cols=110  Identities=19%  Similarity=0.311  Sum_probs=88.4

Q ss_pred             HHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc--c
Q 024797           77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--V  154 (262)
Q Consensus        77 l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~--~  154 (262)
                      +..+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.+++...           ...++.++++|+..  +
T Consensus        30 l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~~-----------~~~~i~~~~~d~~~~~~   97 (475)
T PLN02336         30 LSLLPPYEGKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESING-----------HYKNVKFMCADVTSPDL   97 (475)
T ss_pred             HhhcCccCCCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHhc-----------cCCceEEEEeccccccc
Confidence            33333446779999999999999988765 4589999999999998765432           13468899999864  3


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ++     ++++||+|++.++++|+  +.+....+++++.++|+|||++++.
T Consensus        98 ~~-----~~~~fD~I~~~~~l~~l--~~~~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336         98 NI-----SDGSVDLIFSNWLLMYL--SDKEVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             CC-----CCCCEEEEehhhhHHhC--CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            33     56899999999999998  5566889999999999999999885

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.57  E-value=5.6e-14  Score=114.98  Aligned_cols=146  Identities=17%  Similarity=0.197  Sum_probs=102.5

Q ss_pred             hhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHH-HHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEe
Q 024797           36 TKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLV-QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGID  114 (262)
Q Consensus        36 ~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD  114 (262)
                      ....++.+++.|++.....-.         ...+.......+. .....++.+|||+|||+|.++..+++.. ..++++|
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~iD   77 (233)
T PRK05134          8 EIAKFSALAARWWDPNGEFKP---------LHRINPLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLG-ADVTGID   77 (233)
T ss_pred             HHHHHHHHHHHHhccCCCcHH---------HHHhhHHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcC-CeEEEEc
Confidence            445778888888643321111         1222222222222 2224568899999999999888776643 4799999


Q ss_pred             CChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHh
Q 024797          115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA  194 (262)
Q Consensus       115 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~  194 (262)
                      +++.+++.++++....          ...+.+...++...+..    ..++||+|++..+++|.    .+...+++.+.+
T Consensus        78 ~s~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~~~~----~~~~fD~Ii~~~~l~~~----~~~~~~l~~~~~  139 (233)
T PRK05134         78 ASEENIEVARLHALES----------GLKIDYRQTTAEELAAE----HPGQFDVVTCMEMLEHV----PDPASFVRACAK  139 (233)
T ss_pred             CCHHHHHHHHHHHHHc----------CCceEEEecCHHHhhhh----cCCCccEEEEhhHhhcc----CCHHHHHHHHHH
Confidence            9999999999876521          22467778887665421    35789999999999887    567789999999


Q ss_pred             ccCCCcEEEEEeCCh
Q 024797          195 LLRPGGTFIGTMPDA  209 (262)
Q Consensus       195 ~L~~gG~li~~~~~~  209 (262)
                      +|+|||.++++.++.
T Consensus       140 ~L~~gG~l~v~~~~~  154 (233)
T PRK05134        140 LVKPGGLVFFSTLNR  154 (233)
T ss_pred             HcCCCcEEEEEecCC
Confidence            999999999987653

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.57  E-value=5.5e-14  Score=113.92  Aligned_cols=114  Identities=23%  Similarity=0.281  Sum_probs=88.0

Q ss_pred             HHHHHHHHHh--ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC
Q 024797           72 WIKSVLVQLY--ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (262)
Q Consensus        72 ~~~~~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (262)
                      +...++..+.  ..++.+|||+|||+|.++..++.. ...++|+|+|++|++.|+++....        ....++.+.++
T Consensus        41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~--------~~~~~i~~~~~  111 (219)
T TIGR02021        41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGR--------DVAGNVEFEVN  111 (219)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhc--------CCCCceEEEEC
Confidence            3444444443  346789999999999999888764 448999999999999999987632        11236889999


Q ss_pred             cccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       150 d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      |+...+        ++||+|++..+++|+  +.++...++.++.+++++++.+.+
T Consensus       112 d~~~~~--------~~fD~ii~~~~l~~~--~~~~~~~~l~~i~~~~~~~~~i~~  156 (219)
T TIGR02021       112 DLLSLC--------GEFDIVVCMDVLIHY--PASDMAKALGHLASLTKERVIFTF  156 (219)
T ss_pred             ChhhCC--------CCcCEEEEhhHHHhC--CHHHHHHHHHHHHHHhCCCEEEEE
Confidence            987642        689999999999887  566788899999999987665554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.57  E-value=5.6e-14  Score=113.10  Aligned_cols=111  Identities=19%  Similarity=0.146  Sum_probs=85.3

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      ...++..+...++.+|||+|||+|..+..+++.  ..++|+++|+++++++.|++++...+         ..++.++++|
T Consensus        65 ~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g---------~~~v~~~~gd  135 (212)
T PRK13942         65 VAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLG---------YDNVEVIVGD  135 (212)
T ss_pred             HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCeEEEECC
Confidence            344555556678999999999999988777653  34689999999999999999887432         2358999999


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +.....     +.++||+|++..+..++          ...+.+.|+|||++++...
T Consensus       136 ~~~~~~-----~~~~fD~I~~~~~~~~~----------~~~l~~~LkpgG~lvi~~~  177 (212)
T PRK13942        136 GTLGYE-----ENAPYDRIYVTAAGPDI----------PKPLIEQLKDGGIMVIPVG  177 (212)
T ss_pred             cccCCC-----cCCCcCEEEECCCcccc----------hHHHHHhhCCCcEEEEEEc
Confidence            876543     46789999998876543          2356778999999988653

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.57  E-value=1.9e-14  Score=104.94  Aligned_cols=113  Identities=25%  Similarity=0.342  Sum_probs=85.8

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      |.+|||+|||+|.++..+++....+++|+|+++..++.++.++...        ....+++++++|+.....   ..+++
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~--------~~~~~~~~~~~D~~~~~~---~~~~~   69 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRN--------GLDDRVEVIVGDARDLPE---PLPDG   69 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHC--------TTTTTEEEEESHHHHHHH---TCTTT
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHc--------cCCceEEEEECchhhchh---hccCc
Confidence            4689999999999999887766568999999999999999988732        334569999999977651   01578


Q ss_pred             CeeEEEEcccccccCCC----HHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          165 PFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~----~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +||+|+++-.+......    ......+++++.++|+|||.+++.+++
T Consensus        70 ~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~~  117 (117)
T PF13659_consen   70 KFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITPA  117 (117)
T ss_dssp             -EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             eeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence            99999998765432111    124578899999999999999987763

...

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.56  E-value=7.3e-14  Score=112.84  Aligned_cols=111  Identities=19%  Similarity=0.142  Sum_probs=85.1

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      ..++..+...++.+|||+|||+|..+..+++.  ..++|+++|+++++++.|++++...+.         .+++++++|+
T Consensus        67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~---------~~v~~~~~d~  137 (215)
T TIGR00080        67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL---------DNVIVIVGDG  137 (215)
T ss_pred             HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC---------CCeEEEECCc
Confidence            44555556678899999999999999887764  235699999999999999998874322         3589999998


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .....     ...+||+|++.....++          ...+.+.|+|||++++.+..
T Consensus       138 ~~~~~-----~~~~fD~Ii~~~~~~~~----------~~~~~~~L~~gG~lv~~~~~  179 (215)
T TIGR00080       138 TQGWE-----PLAPYDRIYVTAAGPKI----------PEALIDQLKEGGILVMPVGE  179 (215)
T ss_pred             ccCCc-----ccCCCCEEEEcCCcccc----------cHHHHHhcCcCcEEEEEEcC
Confidence            76432     34689999988766544          24578889999999986543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.55  E-value=2.6e-13  Score=107.30  Aligned_cols=108  Identities=17%  Similarity=0.093  Sum_probs=82.7

Q ss_pred             HHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           77 LVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        77 l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      +..+...++.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++....+         ..+++++++|+.. +
T Consensus        24 ~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~---------~~~i~~~~~d~~~-~   93 (187)
T PRK08287         24 LSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFG---------CGNIDIIPGEAPI-E   93 (187)
T ss_pred             HHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhC---------CCCeEEEecCchh-h
Confidence            34445567889999999999999888764 44689999999999999998775321         1348888888642 2


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +      .++||+|++.....+       ...++..+.++|+|||.+++...
T Consensus        94 ~------~~~~D~v~~~~~~~~-------~~~~l~~~~~~Lk~gG~lv~~~~  132 (187)
T PRK08287         94 L------PGKADAIFIGGSGGN-------LTAIIDWSLAHLHPGGRLVLTFI  132 (187)
T ss_pred             c------CcCCCEEEECCCccC-------HHHHHHHHHHhcCCCeEEEEEEe
Confidence            2      357999998765543       35678999999999999988754

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.55  E-value=2.9e-15  Score=117.17  Aligned_cols=138  Identities=17%  Similarity=0.232  Sum_probs=99.9

Q ss_pred             HHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCCh
Q 024797           38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE  117 (262)
Q Consensus        38 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~  117 (262)
                      ..||+.++.|+......+.          ..+-..+..++......+-.++||+|||||-.+..+ +....+++|+|+|+
T Consensus        89 ~LFD~~Ae~Fd~~LVdkL~----------Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~l-R~~a~~ltGvDiS~  157 (287)
T COG4976          89 TLFDQYAERFDHILVDKLG----------YSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEAL-RDMADRLTGVDISE  157 (287)
T ss_pred             HHHHHHHHHHHHHHHHHhc----------CccHHHHHHHHHhccCCccceeeecccCcCcccHhH-HHHHhhccCCchhH
Confidence            4899999999865433322          112223444555555555679999999999877766 44455799999999


Q ss_pred             hHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccC
Q 024797          118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR  197 (262)
Q Consensus       118 ~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~  197 (262)
                      +|+++|.++--              --...++++..+...   ..+.+||+|+...++.|+    -..+.++.-+...|+
T Consensus       158 nMl~kA~eKg~--------------YD~L~~Aea~~Fl~~---~~~er~DLi~AaDVl~Yl----G~Le~~~~~aa~~L~  216 (287)
T COG4976         158 NMLAKAHEKGL--------------YDTLYVAEAVLFLED---LTQERFDLIVAADVLPYL----GALEGLFAGAAGLLA  216 (287)
T ss_pred             HHHHHHHhccc--------------hHHHHHHHHHHHhhh---ccCCcccchhhhhHHHhh----cchhhHHHHHHHhcC
Confidence            99999988632              122345554432210   046889999999999998    778999999999999


Q ss_pred             CCcEEEEEeC
Q 024797          198 PGGTFIGTMP  207 (262)
Q Consensus       198 ~gG~li~~~~  207 (262)
                      |||.+.|++.
T Consensus       217 ~gGlfaFSvE  226 (287)
T COG4976         217 PGGLFAFSVE  226 (287)
T ss_pred             CCceEEEEec
Confidence            9999999974

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.54  E-value=3.3e-13  Score=107.65  Aligned_cols=117  Identities=20%  Similarity=0.267  Sum_probs=89.2

Q ss_pred             HHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           77 LVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        77 l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      +..+...++.+|||+|||+|.++..+++.  ..++|+++|+++.+++.++++....        +...++.++++|+.+.
T Consensus        33 l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~--------g~~~~v~~~~~d~~~~  104 (198)
T PRK00377         33 LSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF--------GVLNNIVLIKGEAPEI  104 (198)
T ss_pred             HHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh--------CCCCCeEEEEechhhh
Confidence            34555678899999999999998887653  4468999999999999999887632        2234688899998653


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      ...    ..+.||+|++....       ..+..+++.+.++|+|||.+++.....+.+
T Consensus       105 l~~----~~~~~D~V~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~  151 (198)
T PRK00377        105 LFT----INEKFDRIFIGGGS-------EKLKEIISASWEIIKKGGRIVIDAILLETV  151 (198)
T ss_pred             Hhh----cCCCCCEEEECCCc-------ccHHHHHHHHHHHcCCCcEEEEEeecHHHH
Confidence            210    24689999986532       346788999999999999999887766544

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.54  E-value=1.1e-13  Score=108.72  Aligned_cols=109  Identities=16%  Similarity=0.165  Sum_probs=83.9

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..++.... +++|+|+|+.+++.++++....          ..+++++++|+.+..      
T Consensus        17 ~~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~~~d~~~~~------   79 (179)
T TIGR00537        17 ELKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLN----------NVGLDVVMTDLFKGV------   79 (179)
T ss_pred             hcCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHc----------CCceEEEEccccccc------
Confidence            34667899999999999888876554 8999999999999999987521          234788899976642      


Q ss_pred             CCCCeeEEEEcccccccCCC-----------------HHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHYSWST-----------------EARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~-----------------~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                       .++||+|+++..+++....                 ......++.++.++|+|||.+++..+.
T Consensus        80 -~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~  142 (179)
T TIGR00537        80 -RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSS  142 (179)
T ss_pred             -CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEec
Confidence             3589999998877654110                 112567899999999999999887643

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.53  E-value=2.7e-13  Score=117.05  Aligned_cols=122  Identities=13%  Similarity=0.134  Sum_probs=88.4

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +.++..+....+.+|||+|||+|.++..+++. +..+|+++|+|+.+++.|++++...+..      ...++++...|+.
T Consensus       218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~------~~~~v~~~~~D~l  291 (378)
T PRK15001        218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPE------ALDRCEFMINNAL  291 (378)
T ss_pred             HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcc------cCceEEEEEcccc
Confidence            33444443334569999999999999888764 4568999999999999999987532110      0235788888875


Q ss_pred             ccccccccCCCCCeeEEEEcccccccC-CCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSW-STEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~-~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ...      +..+||+|+|+-.+|... .+.....+++..+.++|+|||.+++...
T Consensus       292 ~~~------~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~n  341 (378)
T PRK15001        292 SGV------EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN  341 (378)
T ss_pred             ccC------CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence            432      346899999987765331 1334467899999999999999988753

>PRK14967 putative methyltransferase; Provisional

Probab=99.53  E-value=2.3e-13  Score=110.54  Aligned_cols=126  Identities=21%  Similarity=0.253  Sum_probs=88.9

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      .+......++.+|||+|||+|.++..++.....+++++|+|+.+++.+++++...          ..++.++++|+... 
T Consensus        28 ~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~----------~~~~~~~~~d~~~~-   96 (223)
T PRK14967         28 ALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA----------GVDVDVRRGDWARA-   96 (223)
T ss_pred             HHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh----------CCeeEEEECchhhh-
Confidence            3333344677899999999999888887655558999999999999999877521          22477888887653 


Q ss_pred             cccccCCCCCeeEEEEcccccccC-----------------CCHHHHHHHHHHHHhccCCCcEEEEEeCC---hHHHHHH
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSW-----------------STEARARRALANVSALLRPGGTFIGTMPD---ANVIIKK  215 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~-----------------~~~~~~~~~l~~~~~~L~~gG~li~~~~~---~~~~~~~  215 (262)
                      .     ++++||+|+++.......                 +.......++.++.++|+|||.+++....   .......
T Consensus        97 ~-----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~  171 (223)
T PRK14967         97 V-----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTR  171 (223)
T ss_pred             c-----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHH
Confidence            2     457899999975332110                 01123567889999999999999886543   3344444


Q ss_pred             Hh
Q 024797          216 LR  217 (262)
Q Consensus       216 ~~  217 (262)
                      +.
T Consensus       172 l~  173 (223)
T PRK14967        172 LS  173 (223)
T ss_pred             HH
Confidence            43

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.52  E-value=2.7e-13  Score=110.60  Aligned_cols=100  Identities=24%  Similarity=0.253  Sum_probs=78.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..+++... .|+|+|+|+.|++.|+++....        +...++.+.++|+..        .
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~--------~~~~~i~~~~~d~~~--------~  124 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEA--------GLAGNITFEVGDLES--------L  124 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhc--------CCccCcEEEEcCchh--------c
Confidence            4678999999999999888876543 6999999999999999987632        122368888888432        3


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcE
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT  201 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~  201 (262)
                      +++||+|++..+++|+  +.+....+++++.+.+++++.
T Consensus       125 ~~~fD~v~~~~~l~~~--~~~~~~~~l~~l~~~~~~~~~  161 (230)
T PRK07580        125 LGRFDTVVCLDVLIHY--PQEDAARMLAHLASLTRGSLI  161 (230)
T ss_pred             cCCcCEEEEcchhhcC--CHHHHHHHHHHHHhhcCCeEE
Confidence            5789999999999887  566788899999887754443

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.52  E-value=2e-13  Score=116.13  Aligned_cols=113  Identities=14%  Similarity=0.040  Sum_probs=89.4

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ++......++.+|||+|||+|.++..+++. +..+++++|+ +.+++.+++++.+.        +...+++++.+|+.+.
T Consensus       141 l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--------gl~~rv~~~~~d~~~~  211 (306)
T TIGR02716       141 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--------GVADRMRGIAVDIYKE  211 (306)
T ss_pred             HHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC--------CccceEEEEecCccCC
Confidence            333344456789999999999999888774 4568999998 78999999887643        3345699999998765


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ++     +  .+|+|++..++|++  +.+....++++++++|+|||++++..
T Consensus       212 ~~-----~--~~D~v~~~~~lh~~--~~~~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       212 SY-----P--EADAVLFCRILYSA--NEQLSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             CC-----C--CCCEEEeEhhhhcC--ChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            54     2  36999999988876  56667889999999999999998763

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.52  E-value=7.1e-13  Score=112.18  Aligned_cols=109  Identities=17%  Similarity=0.232  Sum_probs=78.4

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ++.+|||+|||+|.++..+++.+ ..|+|+|+|+.|++.|+++.......    .....++.|.++|+..+        +
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g-~~V~gvD~S~~ml~~A~~~~~~~~~~----~~~~~~~~f~~~Dl~~l--------~  210 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEG-AIVSASDISAAMVAEAERRAKEALAA----LPPEVLPKFEANDLESL--------S  210 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHhcccc----cccccceEEEEcchhhc--------C
Confidence            57799999999999998887653 48999999999999999987632110    00123477888887542        4


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ++||+|+|..+++|+  +.+....+++.+.+ +.+||.++...++
T Consensus       211 ~~fD~Vv~~~vL~H~--p~~~~~~ll~~l~~-l~~g~liIs~~p~  252 (315)
T PLN02585        211 GKYDTVTCLDVLIHY--PQDKADGMIAHLAS-LAEKRLIISFAPK  252 (315)
T ss_pred             CCcCEEEEcCEEEec--CHHHHHHHHHHHHh-hcCCEEEEEeCCc
Confidence            789999999999887  44555667777775 4566655543344

>PRK04266 fibrillarin; Provisional

Probab=99.51  E-value=3e-13  Score=109.44  Aligned_cols=110  Identities=15%  Similarity=0.154  Sum_probs=80.2

Q ss_pred             HHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           79 QLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      .+...++.+|||+|||+|..+..++.. +.+.|+|+|+++.|++.+.+++.+           ..++.++.+|+......
T Consensus        67 ~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~-----------~~nv~~i~~D~~~~~~~  135 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEE-----------RKNIIPILADARKPERY  135 (226)
T ss_pred             hCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhh-----------cCCcEEEECCCCCcchh
Confidence            355678899999999999999888763 346899999999999987766542           13588899998652100


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ..  -.++||+|++...      .+.....++.++.++|||||.++++++
T Consensus       136 ~~--l~~~~D~i~~d~~------~p~~~~~~L~~~~r~LKpGG~lvI~v~  177 (226)
T PRK04266        136 AH--VVEKVDVIYQDVA------QPNQAEIAIDNAEFFLKDGGYLLLAIK  177 (226)
T ss_pred             hh--ccccCCEEEECCC------ChhHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            00  1356999986432      122345678999999999999999644

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.51  E-value=2.9e-13  Score=108.78  Aligned_cols=133  Identities=11%  Similarity=0.065  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCc-cc--cccccCCCCCeE
Q 024797           69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA-DH--HQRRKKFSFPAR  145 (262)
Q Consensus        69 ~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~-~~--~~~~~~~~~~v~  145 (262)
                      .+.++...+..+...++.+||+.|||.|..+..|+..+. .|+|+|+|+.+++.+.+...... ..  .....-....++
T Consensus        28 pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~  106 (226)
T PRK13256         28 PNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIE  106 (226)
T ss_pred             CCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceE
Confidence            334444444444445678999999999999999987666 69999999999999866321100 00  000001134689


Q ss_pred             EEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          146 LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       146 ~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +.++|+.+++...  ...+.||+|+-..+++++  +++.+.+..+.+.++|+|||.+++.+
T Consensus       107 ~~~gD~f~l~~~~--~~~~~fD~VyDra~~~Al--pp~~R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        107 IYVADIFNLPKIA--NNLPVFDIWYDRGAYIAL--PNDLRTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             EEEccCcCCCccc--cccCCcCeeeeehhHhcC--CHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            9999999885310  013689999999999988  88889999999999999999976654

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.51  E-value=1.3e-13  Score=113.48  Aligned_cols=110  Identities=17%  Similarity=0.123  Sum_probs=82.1

Q ss_pred             HHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      .+..-.|.+|||||||+|.++..++..+...|+|+|.+.....+......-.+        ....+..+...+++++   
T Consensus       110 ~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg--------~~~~~~~lplgvE~Lp---  178 (315)
T PF08003_consen  110 HLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG--------QDPPVFELPLGVEDLP---  178 (315)
T ss_pred             hhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC--------CCccEEEcCcchhhcc---
Confidence            33345789999999999999999988888889999999887666433221100        0112233323445554   


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                         ..+.||+|+|.+++.|.    .++...|.+++..|++||.+|+.+
T Consensus       179 ---~~~~FDtVF~MGVLYHr----r~Pl~~L~~Lk~~L~~gGeLvLET  219 (315)
T PF08003_consen  179 ---NLGAFDTVFSMGVLYHR----RSPLDHLKQLKDSLRPGGELVLET  219 (315)
T ss_pred             ---ccCCcCEEEEeeehhcc----CCHHHHHHHHHHhhCCCCEEEEEE
Confidence               25789999999999998    778899999999999999999764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.50  E-value=2.2e-12  Score=99.11  Aligned_cols=121  Identities=21%  Similarity=0.255  Sum_probs=97.2

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      .+..+.+.++++++|||||+|..+..++. .+.++++++|-++++++..+++....+         ..++.++.+++-+.
T Consensus        26 ~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg---------~~n~~vv~g~Ap~~   96 (187)
T COG2242          26 TLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG---------VDNLEVVEGDAPEA   96 (187)
T ss_pred             HHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC---------CCcEEEEeccchHh
Confidence            45567788999999999999999999975 467789999999999999999987544         34599999998664


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE  218 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~  218 (262)
                      -.     ...++|.|++.+. -       ....+++.+...|+|||++++.....+.....+..
T Consensus        97 L~-----~~~~~daiFIGGg-~-------~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~  147 (187)
T COG2242          97 LP-----DLPSPDAIFIGGG-G-------NIEEILEAAWERLKPGGRLVANAITLETLAKALEA  147 (187)
T ss_pred             hc-----CCCCCCEEEECCC-C-------CHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHH
Confidence            32     2237999999887 3       25789999999999999999988776655444433

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.50  E-value=1e-12  Score=102.47  Aligned_cols=114  Identities=19%  Similarity=0.256  Sum_probs=85.6

Q ss_pred             HHHHHHHhccC--CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           74 KSVLVQLYARR--GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        74 ~~~l~~~~~~~--~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      .+.+..+..+.  +.-|||||||+|..+..+...+ -.++|+|+|+.|++.|.++.-+              -.++.+|+
T Consensus        38 eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G-h~wiGvDiSpsML~~a~~~e~e--------------gdlil~DM  102 (270)
T KOG1541|consen   38 ERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG-HQWIGVDISPSMLEQAVERELE--------------GDLILCDM  102 (270)
T ss_pred             HHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC-ceEEeecCCHHHHHHHHHhhhh--------------cCeeeeec
Confidence            34455444444  6689999999996666654333 4699999999999999874321              45778887


Q ss_pred             -cccccccccCCCCCeeEEEEcccccccCC-------CHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          152 -YEVHLDKVLADDAPFDICSCQFAMHYSWS-------TEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       152 -~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-------~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                       +-+|+     .++.||.+|+..++++++.       +...+..++..++.+|++|+..++-..
T Consensus       103 G~Glpf-----rpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY  161 (270)
T KOG1541|consen  103 GEGLPF-----RPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY  161 (270)
T ss_pred             CCCCCC-----CCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEec
Confidence             45666     7899999999998887753       334456788889999999999998874

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.49  E-value=5.6e-13  Score=108.36  Aligned_cols=108  Identities=21%  Similarity=0.332  Sum_probs=87.1

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      .+.+|||+|||+|.++..+++.. ..++|+|+++.+++.+++++...+         ..++.+.+.|+.+.+..    ..
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~-~~v~~iD~s~~~~~~a~~~~~~~~---------~~~~~~~~~d~~~~~~~----~~  110 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG-ANVTGIDASEENIEVAKLHAKKDP---------LLKIEYRCTSVEDLAEK----GA  110 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHHHHHcC---------CCceEEEeCCHHHhhcC----CC
Confidence            47799999999999888776644 369999999999999998775211         11478888888776541    23


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ++||+|++..+++|.    .++..++.++.++|+|||.+++..++.
T Consensus       111 ~~~D~i~~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~i~~~~~  152 (224)
T TIGR01983       111 KSFDVVTCMEVLEHV----PDPQAFIRACAQLLKPGGILFFSTINR  152 (224)
T ss_pred             CCccEEEehhHHHhC----CCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            789999999999987    567889999999999999999887654

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.49  E-value=4.3e-13  Score=112.97  Aligned_cols=105  Identities=21%  Similarity=0.177  Sum_probs=80.3

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|+++....        +....+.+...+...  .     
T Consensus       157 ~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n--------~~~~~~~~~~~~~~~--~-----  221 (288)
T TIGR00406       157 DLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELN--------QVSDRLQVKLIYLEQ--P-----  221 (288)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHc--------CCCcceEEEeccccc--c-----
Confidence            3577899999999999888777666668999999999999999987632        223345556655322  1     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .+++||+|+++...       .....++.++.++|+|||.++++...
T Consensus       222 ~~~~fDlVvan~~~-------~~l~~ll~~~~~~LkpgG~li~sgi~  261 (288)
T TIGR00406       222 IEGKADVIVANILA-------EVIKELYPQFSRLVKPGGWLILSGIL  261 (288)
T ss_pred             cCCCceEEEEecCH-------HHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence            35789999987643       34567899999999999999997653

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.48  E-value=5.8e-13  Score=105.32  Aligned_cols=130  Identities=18%  Similarity=0.246  Sum_probs=97.2

Q ss_pred             hhHHHHHHHHHHHHhcc---CCCeEEEecCCCCcchHHHHhc-CC--CeEEEEeCChhHHHHHHHHhccCccccccccCC
Q 024797           67 KKLNNWIKSVLVQLYAR---RGDVVLDLACGKGGDLIKWDKA-KI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF  140 (262)
Q Consensus        67 ~~~~~~~~~~l~~~~~~---~~~~vLDiGcG~G~~~~~l~~~-~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~  140 (262)
                      -..++|+..-...+..-   ...+|||+|||.|..+..+++. +.  -.++++|.|+.+++..++....          .
T Consensus        51 fkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~----------~  120 (264)
T KOG2361|consen   51 FKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY----------D  120 (264)
T ss_pred             cchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc----------c
Confidence            44556765555544432   2237999999999999888873 22  3699999999999999987542          1


Q ss_pred             CCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          141 SFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       141 ~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ..++...+.|+....+.... +.+++|+|++.+++.-+  .++....++.+++++|||||.|++.....
T Consensus       121 e~~~~afv~Dlt~~~~~~~~-~~~svD~it~IFvLSAi--~pek~~~a~~nl~~llKPGG~llfrDYg~  186 (264)
T KOG2361|consen  121 ESRVEAFVWDLTSPSLKEPP-EEGSVDIITLIFVLSAI--HPEKMQSVIKNLRTLLKPGGSLLFRDYGR  186 (264)
T ss_pred             hhhhcccceeccchhccCCC-CcCccceEEEEEEEecc--ChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence            34566677777654432222 67899999999999877  77889999999999999999999976544

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.48  E-value=3.8e-13  Score=107.95  Aligned_cols=109  Identities=20%  Similarity=0.226  Sum_probs=77.7

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc-
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-  158 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-  158 (262)
                      ..++.+|||+|||+|.++..+++.  ..+.|+|+|+++ |.     .              ..++.++++|+.+.+... 
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-----~--------------~~~v~~i~~D~~~~~~~~~  108 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-----P--------------IVGVDFLQGDFRDELVLKA  108 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-----C--------------CCCcEEEecCCCChHHHHH
Confidence            367889999999999998888764  345899999998 20     1              124889999998754100 


Q ss_pred             c--cCCCCCeeEEEEcccccccCCCHHH-------HHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          159 V--LADDAPFDICSCQFAMHYSWSTEAR-------ARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       159 ~--~~~~~~fD~V~~~~~l~~~~~~~~~-------~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      .  ...+++||+|+++.+.++.-....+       ...++.++.++|+|||.+++.+...+
T Consensus       109 i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~  169 (209)
T PRK11188        109 LLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE  169 (209)
T ss_pred             HHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence            0  0146789999998776543111111       25689999999999999999776543

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.48  E-value=2e-12  Score=108.49  Aligned_cols=114  Identities=18%  Similarity=0.178  Sum_probs=85.0

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++...        +...++.++++|+.+. +     
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~--------~~~~~i~~~~~D~~~~-~-----  185 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH--------GLEDRVTLIQSDLFAA-L-----  185 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEECchhhc-c-----
Confidence            34578999999999999988764 4458999999999999999987632        2234689999998542 2     


Q ss_pred             CCCCeeEEEEcccc------ccc-----C----------CCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          162 DDAPFDICSCQFAM------HYS-----W----------STEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       162 ~~~~fD~V~~~~~l------~~~-----~----------~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      +.++||+|+++--.      .++     .          +..+....++..+.++|+|||.+++.+.+..
T Consensus       186 ~~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~  255 (284)
T TIGR03533       186 PGRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM  255 (284)
T ss_pred             CCCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence            34689999987311      110     0          0123457789999999999999999987643

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.48  E-value=9.7e-13  Score=112.88  Aligned_cols=115  Identities=16%  Similarity=0.213  Sum_probs=86.2

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ++..+......+|||+|||+|.++..+++. +..+++++|+|+.|++.|++++...          ....+++..|+...
T Consensus       188 Ll~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n----------~l~~~~~~~D~~~~  257 (342)
T PRK09489        188 LLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN----------GLEGEVFASNVFSD  257 (342)
T ss_pred             HHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----------CCCCEEEEcccccc
Confidence            333333334568999999999998888764 4457999999999999999887632          12246677776542


Q ss_pred             ccccccCCCCCeeEEEEcccccccCC-CHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                             ..++||+|+++..+|.... .......+++++.++|+|||.+++...
T Consensus       258 -------~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        258 -------IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             -------cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence                   2478999999988875322 245678999999999999999988764

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.47  E-value=4.9e-13  Score=114.81  Aligned_cols=118  Identities=22%  Similarity=0.231  Sum_probs=89.1

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ....++.+|||+|||+|.++...+.. ...++|+|+++.|+..|++++...+.        . ++.+.++|+.+++.   
T Consensus       178 ~~~~~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~--------~-~i~~~~~D~~~l~~---  244 (329)
T TIGR01177       178 ARVTEGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGI--------E-DFFVKRGDATKLPL---  244 (329)
T ss_pred             hCCCCcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCC--------C-CCeEEecchhcCCc---
Confidence            34567889999999999988776543 45799999999999999988764322        2 27889999998876   


Q ss_pred             cCCCCCeeEEEEccccccc--C---CCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          160 LADDAPFDICSCQFAMHYS--W---STEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~--~---~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                        ++++||+|+++..+...  .   ........++.++.++|+|||++++.+++...+
T Consensus       245 --~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~~~~  300 (329)
T TIGR01177       245 --SSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTRIDL  300 (329)
T ss_pred             --ccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCCCCH
Confidence              46789999997432110  0   012346889999999999999999888765433

This family is found exclusively in the Archaea.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.47  E-value=2.1e-12  Score=102.83  Aligned_cols=114  Identities=18%  Similarity=0.194  Sum_probs=84.0

Q ss_pred             HHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-
Q 024797           77 LVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-  154 (262)
Q Consensus        77 l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-  154 (262)
                      +..+...++.+|||+|||+|.++..++.. +..+++++|+|+++++.+++++...+         ..+++++++|+.+. 
T Consensus        33 ~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~---------~~~v~~~~~d~~~~~  103 (196)
T PRK07402         33 ISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFG---------VKNVEVIEGSAPECL  103 (196)
T ss_pred             HHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---------CCCeEEEECchHHHH
Confidence            33444567889999999999998888653 45689999999999999999876322         13588999998542 


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      +.     ....+|.+++...        .....++.++.++|+|||.+++..++.+.+
T Consensus       104 ~~-----~~~~~d~v~~~~~--------~~~~~~l~~~~~~LkpgG~li~~~~~~~~~  148 (196)
T PRK07402        104 AQ-----LAPAPDRVCIEGG--------RPIKEILQAVWQYLKPGGRLVATASSLEGL  148 (196)
T ss_pred             hh-----CCCCCCEEEEECC--------cCHHHHHHHHHHhcCCCeEEEEEeecHHHH
Confidence            11     1234577655321        235788999999999999999998887654

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.46  E-value=1.8e-12  Score=102.07  Aligned_cols=106  Identities=14%  Similarity=0.146  Sum_probs=80.9

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ...+.||+|||-|+.+..++...+..|-.+|..+..++.|++.+...         ...-.++.+..++++..     +.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~---------~~~v~~~~~~gLQ~f~P-----~~  120 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD---------NPRVGEFYCVGLQDFTP-----EE  120 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCG---------GCCEEEEEES-GGG---------T
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhccc---------CCCcceEEecCHhhccC-----CC
Confidence            35689999999999999887777889999999999999999877621         12235678888877653     45


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ++||+|.+.+++.|+  +.++..++|+++...|+|+|.+++.
T Consensus       121 ~~YDlIW~QW~lghL--TD~dlv~fL~RCk~~L~~~G~IvvK  160 (218)
T PF05891_consen  121 GKYDLIWIQWCLGHL--TDEDLVAFLKRCKQALKPNGVIVVK  160 (218)
T ss_dssp             T-EEEEEEES-GGGS---HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcEeEEEehHhhccC--CHHHHHHHHHHHHHhCcCCcEEEEE
Confidence            799999999999999  8899999999999999999999984

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.46  E-value=1.3e-12  Score=105.42  Aligned_cols=107  Identities=17%  Similarity=0.176  Sum_probs=81.2

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ++..+...++.+|||+|||+|..+..++.. ..+++++|+++++++.+++++...+         ..++++.++|+....
T Consensus        70 l~~~l~~~~~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~---------~~~v~~~~~d~~~~~  139 (212)
T PRK00312         70 MTELLELKPGDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLG---------LHNVSVRHGDGWKGW  139 (212)
T ss_pred             HHHhcCCCCCCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCC---------CCceEEEECCcccCC
Confidence            444455678899999999999888766544 3589999999999999999886432         124889999975432


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .     +.++||+|++...++++          ...+.+.|+|||.+++.+.
T Consensus       140 ~-----~~~~fD~I~~~~~~~~~----------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        140 P-----AYAPFDRILVTAAAPEI----------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             C-----cCCCcCEEEEccCchhh----------hHHHHHhcCCCcEEEEEEc
Confidence            1     34789999998866543          2457789999999998765

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.46  E-value=8.6e-13  Score=104.92  Aligned_cols=102  Identities=25%  Similarity=0.336  Sum_probs=79.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc-cc-ccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VH-LDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~-~~~~~  160 (262)
                      .++.+|||+|||+|.++..++......++|+|+|+++++.+++.                +++++++|+.+ ++ +    
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~----------------~~~~~~~d~~~~l~~~----   71 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR----------------GVNVIQGDLDEGLEAF----   71 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc----------------CCeEEEEEhhhccccc----
Confidence            46789999999999998887655445689999999999998642                26778888765 32 3    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                       ++++||+|+++.+++|+    .++..+++++.+++   |.+++++|+...+
T Consensus        72 -~~~sfD~Vi~~~~l~~~----~d~~~~l~e~~r~~---~~~ii~~p~~~~~  115 (194)
T TIGR02081        72 -PDKSFDYVILSQTLQAT----RNPEEILDEMLRVG---RHAIVSFPNFGYW  115 (194)
T ss_pred             -CCCCcCEEEEhhHhHcC----cCHHHHHHHHHHhC---CeEEEEcCChhHH
Confidence             56789999999999998    66778888887764   4567777876544

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.43  E-value=5.9e-12  Score=106.71  Aligned_cols=111  Identities=18%  Similarity=0.195  Sum_probs=83.4

Q ss_pred             CeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           86 DVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      .+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++...        +...+++++++|+.+. +     +.+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~--------~l~~~i~~~~~D~~~~-l-----~~~  200 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH--------GLEDRVTLIESDLFAA-L-----PGR  200 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--------CCCCcEEEEECchhhh-C-----CCC
Confidence            68999999999999888764 4568999999999999999988632        2234689999998552 2     346


Q ss_pred             CeeEEEEcccc-------------cccC--------CCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          165 PFDICSCQFAM-------------HYSW--------STEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       165 ~fD~V~~~~~l-------------~~~~--------~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      +||+|+++--.             .|-.        +..+....++..+.++|+|||.+++.+.+..
T Consensus       201 ~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~  267 (307)
T PRK11805        201 RYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSR  267 (307)
T ss_pred             CccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcCH
Confidence            89999987311             1100        0123457889999999999999999886543

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=1e-12  Score=108.89  Aligned_cols=103  Identities=25%  Similarity=0.370  Sum_probs=78.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++...++.+..+++|+|+++.+++.|+++....+.        ...+.....+....+      .
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v--------~~~~~~~~~~~~~~~------~  226 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGV--------ELLVQAKGFLLLEVP------E  226 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCC--------chhhhcccccchhhc------c
Confidence            48899999999999999988888888999999999999999998873221        111222223322222      3


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .++||+|+++- +-      +-...+...+.+.|+|||+++++-
T Consensus       227 ~~~~DvIVANI-LA------~vl~~La~~~~~~lkpgg~lIlSG  263 (300)
T COG2264         227 NGPFDVIVANI-LA------EVLVELAPDIKRLLKPGGRLILSG  263 (300)
T ss_pred             cCcccEEEehh-hH------HHHHHHHHHHHHHcCCCceEEEEe
Confidence            46999999876 32      336788899999999999999874

>PRK04457 spermidine synthase; Provisional

Probab=99.43  E-value=3e-12  Score=106.17  Aligned_cols=115  Identities=12%  Similarity=0.011  Sum_probs=83.3

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|.++..+++. +..+++++|+++++++.|++.+..        .....+++++++|+.+.-..    
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~--------~~~~~rv~v~~~Da~~~l~~----  132 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL--------PENGERFEVIEADGAEYIAV----  132 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC--------CCCCCceEEEECCHHHHHHh----
Confidence            45678999999999988877663 455799999999999999998752        11235789999998654211    


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ..++||+|++...-....+..-....+++.+.+.|+|||++++...+.
T Consensus       133 ~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~  180 (262)
T PRK04457        133 HRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR  180 (262)
T ss_pred             CCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence            246899999864211110111123689999999999999999976543

>PRK14968 putative methyltransferase; Provisional

Probab=99.42  E-value=4.2e-12  Score=100.29  Aligned_cols=112  Identities=22%  Similarity=0.251  Sum_probs=82.8

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..++.. ..+++|+|+|+++++.+++++...+..       ...+.++++|+.+..      .
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~-------~~~~~~~~~d~~~~~------~   87 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIR-------NNGVEVIRSDLFEPF------R   87 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCC-------CcceEEEeccccccc------c
Confidence            57789999999999998888766 568999999999999998887632211       112778888876532      3


Q ss_pred             CCCeeEEEEccccccc-----------------CCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          163 DAPFDICSCQFAMHYS-----------------WSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~-----------------~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +++||+|+++..+...                 .........+++++.++|+|||.+++..++
T Consensus        88 ~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~  150 (188)
T PRK14968         88 GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS  150 (188)
T ss_pred             ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence            4589999987543220                 011334677899999999999999887664

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.41  E-value=3.4e-12  Score=100.16  Aligned_cols=110  Identities=22%  Similarity=0.281  Sum_probs=88.7

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +..+++.+.+.++.+|||||||+|..+.-+++ -.++|+.+|..+...+.|++++..++..         ||.+.++|..
T Consensus        61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~-l~~~V~siEr~~~L~~~A~~~L~~lg~~---------nV~v~~gDG~  130 (209)
T COG2518          61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLAR-LVGRVVSIERIEELAEQARRNLETLGYE---------NVTVRHGDGS  130 (209)
T ss_pred             HHHHHHHhCCCCCCeEEEECCCchHHHHHHHH-HhCeEEEEEEcHHHHHHHHHHHHHcCCC---------ceEEEECCcc
Confidence            55677777889999999999999988877755 3449999999999999999999865543         4999999986


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .---     +..+||.|++..+...+  +        +.+.+.|++||++++-+.
T Consensus       131 ~G~~-----~~aPyD~I~Vtaaa~~v--P--------~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         131 KGWP-----EEAPYDRIIVTAAAPEV--P--------EALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             cCCC-----CCCCcCEEEEeeccCCC--C--------HHHHHhcccCCEEEEEEc
Confidence            5422     56899999999988755  1        346788999999998665

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.40  E-value=2.2e-12  Score=106.59  Aligned_cols=98  Identities=22%  Similarity=0.285  Sum_probs=72.5

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|+++....+        ....+.+..             
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~--------~~~~~~~~~-------------  175 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG--------VELNVYLPQ-------------  175 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC--------CCceEEEcc-------------
Confidence            35788999999999988877766555579999999999999999876311        111122111             


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .+.+||+|+++...       .....++.++.++|+|||.++++..
T Consensus       176 ~~~~fD~Vvani~~-------~~~~~l~~~~~~~LkpgG~lilsgi  214 (250)
T PRK00517        176 GDLKADVIVANILA-------NPLLELAPDLARLLKPGGRLILSGI  214 (250)
T ss_pred             CCCCcCEEEEcCcH-------HHHHHHHHHHHHhcCCCcEEEEEEC
Confidence            12279999986533       3456789999999999999999854

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.40  E-value=2e-12  Score=103.26  Aligned_cols=111  Identities=22%  Similarity=0.293  Sum_probs=82.3

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      ...++..+...++.+|||||||+|..+..++.  ...+.|+++|..+..++.|++++...+.         .++.++++|
T Consensus        61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~---------~nv~~~~gd  131 (209)
T PF01135_consen   61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI---------DNVEVVVGD  131 (209)
T ss_dssp             HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT---------HSEEEEES-
T ss_pred             HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc---------CceeEEEcc
Confidence            45567777788999999999999988887765  3455799999999999999999885432         369999999


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ......     +..+||.|++..+...+          -..+.+.|++||+|++-+.
T Consensus       132 g~~g~~-----~~apfD~I~v~~a~~~i----------p~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  132 GSEGWP-----EEAPFDRIIVTAAVPEI----------PEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             GGGTTG-----GG-SEEEEEESSBBSS------------HHHHHTEEEEEEEEEEES
T ss_pred             hhhccc-----cCCCcCEEEEeeccchH----------HHHHHHhcCCCcEEEEEEc
Confidence            765322     45789999999888643          1347778999999998654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.40  E-value=3.4e-12  Score=102.71  Aligned_cols=130  Identities=23%  Similarity=0.281  Sum_probs=91.9

Q ss_pred             chhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhcc-Cccc--cccccCCCC
Q 024797           66 LKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG-DADH--HQRRKKFSF  142 (262)
Q Consensus        66 ~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~--~~~~~~~~~  142 (262)
                      ....+..+...+..+...++.+||..|||.|..+..|+..+. .|+|+|+|+.+++.+.+.... ....  .....-...
T Consensus        19 ~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~   97 (218)
T PF05724_consen   19 QGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAG   97 (218)
T ss_dssp             -TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTS
T ss_pred             CCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCC
Confidence            344445566666665667778999999999999998887654 799999999999998543321 0000  000001134


Q ss_pred             CeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEE
Q 024797          143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF  202 (262)
Q Consensus       143 ~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~l  202 (262)
                      +|++.++|+.+++..    ..++||+|+=..+++-+  +++.+.+..+.+.++|+|||.+
T Consensus        98 ~i~~~~gDfF~l~~~----~~g~fD~iyDr~~l~Al--pp~~R~~Ya~~l~~ll~p~g~~  151 (218)
T PF05724_consen   98 RITIYCGDFFELPPE----DVGKFDLIYDRTFLCAL--PPEMRERYAQQLASLLKPGGRG  151 (218)
T ss_dssp             SEEEEES-TTTGGGS----CHHSEEEEEECSSTTTS---GGGHHHHHHHHHHCEEEEEEE
T ss_pred             ceEEEEcccccCChh----hcCCceEEEEecccccC--CHHHHHHHHHHHHHHhCCCCcE
Confidence            689999999997642    23589999988888766  6778999999999999999994

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.40  E-value=6.1e-12  Score=88.60  Aligned_cols=103  Identities=26%  Similarity=0.377  Sum_probs=82.3

Q ss_pred             eEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCe
Q 024797           87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF  166 (262)
Q Consensus        87 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f  166 (262)
                      +|||+|||.|.++..++.....+++++|+++.++..+++....         ....++.+...|+.+...    ...++|
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~----~~~~~~   67 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA---------LLADNVEVLKGDAEELPP----EADESF   67 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc---------ccccceEEEEcChhhhcc----ccCCce
Confidence            5899999999998888765566899999999999999853321         123458888999877643    135789


Q ss_pred             eEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          167 DICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       167 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      |+|++...++++   ......+++.+.+.|++||.+++.
T Consensus        68 d~i~~~~~~~~~---~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          68 DVIISDPPLHHL---VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             EEEEEccceeeh---hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            999999998862   377899999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=99.39  E-value=8.8e-13  Score=104.33  Aligned_cols=114  Identities=14%  Similarity=0.254  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC
Q 024797           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (262)
Q Consensus        70 ~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (262)
                      .+|+..+...-  .....++|+|||+|. +...++....+|+|+|+|+.|++.|++..+..        -..........
T Consensus        21 tdw~~~ia~~~--~~h~~a~DvG~G~Gq-a~~~iae~~k~VIatD~s~~mL~~a~k~~~~~--------y~~t~~~ms~~   89 (261)
T KOG3010|consen   21 TDWFKKIASRT--EGHRLAWDVGTGNGQ-AARGIAEHYKEVIATDVSEAMLKVAKKHPPVT--------YCHTPSTMSSD   89 (261)
T ss_pred             HHHHHHHHhhC--CCcceEEEeccCCCc-chHHHHHhhhhheeecCCHHHHHHhhcCCCcc--------cccCCcccccc
Confidence            55666554322  122289999999994 44444555778999999999999998875520        00001111112


Q ss_pred             cccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCc-EEEE
Q 024797          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIG  204 (262)
Q Consensus       150 d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG-~li~  204 (262)
                      ++..     +...++++|+|++..++|++     +.+.+++.+.|+||+.| .+.+
T Consensus        90 ~~v~-----L~g~e~SVDlI~~Aqa~HWF-----dle~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen   90 EMVD-----LLGGEESVDLITAAQAVHWF-----DLERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             cccc-----ccCCCcceeeehhhhhHHhh-----chHHHHHHHHHHcCCCCCEEEE
Confidence            2222     22247899999999999987     56889999999998876 5544

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.39  E-value=8.6e-12  Score=104.95  Aligned_cols=110  Identities=15%  Similarity=0.218  Sum_probs=83.1

Q ss_pred             CeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           86 DVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      .+|||+|||+|.++..++.. +..+++|+|+|+.+++.|+++....        +...++.++++|+.+. +     +..
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~--------~~~~~v~~~~~d~~~~-~-----~~~  181 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN--------QLEHRVEFIQSNLFEP-L-----AGQ  181 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEECchhcc-C-----cCC
Confidence            68999999999998888764 3458999999999999999987632        2233589999998652 2     344


Q ss_pred             CeeEEEEcc-------------ccccc--------CCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          165 PFDICSCQF-------------AMHYS--------WSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       165 ~fD~V~~~~-------------~l~~~--------~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      +||+|+++-             +..|-        .+.......++..+.++|+|||.+++.+.+.
T Consensus       182 ~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~  247 (284)
T TIGR00536       182 KIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW  247 (284)
T ss_pred             CccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence            899999863             11111        0112357789999999999999999988754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.39  E-value=8.5e-12  Score=103.12  Aligned_cols=111  Identities=21%  Similarity=0.195  Sum_probs=82.6

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..+.+|||+|||+|.++..++.. +...++|+|+++.+++.|+++....+.         .++.++++|+.+. +     
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~---------~~~~~~~~d~~~~-~-----  150 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL---------DNVTFLQSDWFEP-L-----  150 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC---------CeEEEEECchhcc-C-----
Confidence            34568999999999999988764 345899999999999999998763221         2588999998662 3     


Q ss_pred             CCCCeeEEEEcccccc------cCC----------------CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHY------SWS----------------TEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~------~~~----------------~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +.++||+|+++..+..      +..                .......++.++.++|+|||.+++....
T Consensus       151 ~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~  219 (251)
T TIGR03534       151 PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGY  219 (251)
T ss_pred             cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence            4678999998653321      100                0122357889999999999999998753

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.38  E-value=2.8e-12  Score=107.25  Aligned_cols=111  Identities=23%  Similarity=0.295  Sum_probs=80.4

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.+++..++.+.++|+|+|+++.+++.|+++....        +...++.+.  ...+  .     
T Consensus       159 ~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N--------~~~~~~~v~--~~~~--~-----  221 (295)
T PF06325_consen  159 VKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELN--------GVEDRIEVS--LSED--L-----  221 (295)
T ss_dssp             SSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHT--------T-TTCEEES--CTSC--T-----
T ss_pred             ccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHc--------CCCeeEEEE--Eecc--c-----
Confidence            4578899999999999988887778889999999999999999998732        333344332  1112  1     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe---CChHHHHHHH
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM---PDANVIIKKL  216 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~---~~~~~~~~~~  216 (262)
                      ..++||+|+++-..       +-...++..+.+.|+|||+++++-   ...+.+...+
T Consensus       222 ~~~~~dlvvANI~~-------~vL~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~  272 (295)
T PF06325_consen  222 VEGKFDLVVANILA-------DVLLELAPDIASLLKPGGYLILSGILEEQEDEVIEAY  272 (295)
T ss_dssp             CCS-EEEEEEES-H-------HHHHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHH
T ss_pred             ccccCCEEEECCCH-------HHHHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHH
Confidence            34899999987644       345778888999999999999874   2334555555

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PTZ00146 fibrillarin; Provisional

Probab=99.38  E-value=4.2e-12  Score=105.18  Aligned_cols=108  Identities=19%  Similarity=0.159  Sum_probs=78.1

Q ss_pred             HHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc-
Q 024797           79 QLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-  155 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-  155 (262)
                      .+.+.++.+|||+|||+|.++..++..  ..+.|+++|+++.|++...+....           ..++.++.+|+.... 
T Consensus       127 ~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~-----------r~NI~~I~~Da~~p~~  195 (293)
T PTZ00146        127 NIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKK-----------RPNIVPIIEDARYPQK  195 (293)
T ss_pred             eeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----------cCCCEEEECCccChhh
Confidence            445678899999999999999988763  356899999998766444443321           135888999986421 


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +.   ...+.||+|++....      +.+...++.++.++|||||.|++.+
T Consensus       196 y~---~~~~~vDvV~~Dva~------pdq~~il~~na~r~LKpGG~~vI~i  237 (293)
T PTZ00146        196 YR---MLVPMVDVIFADVAQ------PDQARIVALNAQYFLKNGGHFIISI  237 (293)
T ss_pred             hh---cccCCCCEEEEeCCC------cchHHHHHHHHHHhccCCCEEEEEE
Confidence            11   023579999988742      1345667778999999999999864

>PRK00811 spermidine synthase; Provisional

Probab=99.38  E-value=5.4e-12  Score=105.90  Aligned_cols=119  Identities=18%  Similarity=0.190  Sum_probs=86.4

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...+.+||++|||+|..+..+++. ...+|+++|+++.+++.|++.+...+...    ....+++++.+|+..+-..   
T Consensus        74 ~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~----~~d~rv~v~~~Da~~~l~~---  146 (283)
T PRK00811         74 HPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGA----YDDPRVELVIGDGIKFVAE---  146 (283)
T ss_pred             CCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcccc----ccCCceEEEECchHHHHhh---
Confidence            346679999999999999988775 45689999999999999999875321100    0145689999998764321   


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                       ..++||+|++...-.+.....-....+++.+.+.|+|||++++...+
T Consensus       147 -~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~  193 (283)
T PRK00811        147 -TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGS  193 (283)
T ss_pred             -CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCC
Confidence             35789999987644332111112367889999999999999986543

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.37  E-value=9.9e-12  Score=105.49  Aligned_cols=108  Identities=18%  Similarity=0.215  Sum_probs=81.2

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      .++..+...++.+|||+|||+|.++..+++..  .+.|+++|+++++++.|++++...+         ..++.++++|+.
T Consensus        71 ~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g---------~~nV~~i~gD~~  141 (322)
T PRK13943         71 LFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLG---------IENVIFVCGDGY  141 (322)
T ss_pred             HHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcC---------CCcEEEEeCChh
Confidence            34444556678899999999999988887632  3479999999999999999876432         235889999976


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ....     ..++||+|++.....++          ...+.+.|+|||.+++..
T Consensus       142 ~~~~-----~~~~fD~Ii~~~g~~~i----------p~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        142 YGVP-----EFAPYDVIFVTVGVDEV----------PETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             hccc-----ccCCccEEEECCchHHh----------HHHHHHhcCCCCEEEEEe
Confidence            6543     34679999988765432          234678999999998865

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.36  E-value=5.1e-12  Score=99.98  Aligned_cols=107  Identities=21%  Similarity=0.237  Sum_probs=74.4

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc-
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-  158 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-  158 (262)
                      ..++.+|||+|||+|.++..+++.  ..++++++|+|+.+      ..              .++.++++|+.+..... 
T Consensus        30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~--------------~~i~~~~~d~~~~~~~~~   89 (188)
T TIGR00438        30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PI--------------ENVDFIRGDFTDEEVLNK   89 (188)
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cC--------------CCceEEEeeCCChhHHHH
Confidence            367889999999999988877653  34579999999854      11              13778888886643100 


Q ss_pred             c--cCCCCCeeEEEEccccc--------ccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          159 V--LADDAPFDICSCQFAMH--------YSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       159 ~--~~~~~~fD~V~~~~~l~--------~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      .  ..+.++||+|++..+.+        |. ...+....++..+.++|+|||.+++.....
T Consensus        90 l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~  149 (188)
T TIGR00438        90 IRERVGDDKVDVVMSDAAPNISGYWDIDHL-RSIDLVELALDIAKEVLKPKGNFVVKVFQG  149 (188)
T ss_pred             HHHHhCCCCccEEEcCCCCCCCCCccccHH-HHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence            0  01456899999865422        11 012335789999999999999999976543

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.35  E-value=1.7e-11  Score=98.35  Aligned_cols=119  Identities=20%  Similarity=0.234  Sum_probs=98.3

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      ++......++.+|||.|.|+|.++..++.  .+.++|+.+|+-++.++.|++++.+.        .+..++.+..+|+.+
T Consensus        86 I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~--------~l~d~v~~~~~Dv~~  157 (256)
T COG2519          86 IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF--------GLGDRVTLKLGDVRE  157 (256)
T ss_pred             HHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh--------ccccceEEEeccccc
Confidence            44455678999999999999999999985  46689999999999999999999854        334558889999987


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHh
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR  217 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~  217 (262)
                      ...      ...||+|++..         +++.+++..++++|+|||.+++.+|..+.+.+-+.
T Consensus       158 ~~~------~~~vDav~LDm---------p~PW~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~  206 (256)
T COG2519         158 GID------EEDVDAVFLDL---------PDPWNVLEHVSDALKPGGVVVVYSPTVEQVEKTVE  206 (256)
T ss_pred             ccc------ccccCEEEEcC---------CChHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHH
Confidence            764      34899998644         66789999999999999999999999877654433

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.35  E-value=1.1e-11  Score=110.12  Aligned_cols=118  Identities=19%  Similarity=0.222  Sum_probs=86.1

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +.+.++.+|||+|||+|..+..++..  ..+.|+++|+++.+++.+++++...+.         .++.++++|+..++..
T Consensus       248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~---------~~v~~~~~D~~~~~~~  318 (434)
T PRK14901        248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL---------KSIKILAADSRNLLEL  318 (434)
T ss_pred             hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC---------CeEEEEeCChhhcccc
Confidence            34567899999999999999888763  346899999999999999998874332         2489999998776410


Q ss_pred             cccCCCCCeeEEEEcc------cccccCC-----CHH-------HHHHHHHHHHhccCCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQF------AMHYSWS-----TEA-------RARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~------~l~~~~~-----~~~-------~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .. ...++||.|++..      ++.+..+     +..       .+.+++.++.+.|||||.|+.++.
T Consensus       319 ~~-~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc  385 (434)
T PRK14901        319 KP-QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC  385 (434)
T ss_pred             cc-cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            00 0356899999743      3332210     111       257889999999999999987764

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.35  E-value=2e-11  Score=105.85  Aligned_cols=112  Identities=14%  Similarity=0.134  Sum_probs=82.7

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|.++..++.. +..+++|+|+|+.|++.|+++....          ..++.++++|+.+....    
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~----------g~rV~fi~gDl~e~~l~----  315 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL----------GARVEFAHGSWFDTDMP----  315 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----------CCcEEEEEcchhccccc----
Confidence            35569999999999998888753 4568999999999999999987632          23689999998654321    


Q ss_pred             CCCCeeEEEEcccccc-----c----------------CCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHY-----S----------------WSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~-----~----------------~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ..++||+|+++-...-     .                -+..+..+.++..+.+.|+|||.+++.+..
T Consensus       316 ~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~  383 (423)
T PRK14966        316 SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF  383 (423)
T ss_pred             cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc
Confidence            2457999999753210     0                011223567888889999999999987754

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.34  E-value=3e-11  Score=101.28  Aligned_cols=113  Identities=19%  Similarity=0.226  Sum_probs=83.7

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ...++.+|||+|||+|..+..++.. +...++|+|+|+.+++.|+++...         ....++.++++|+... .   
T Consensus       105 ~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~---------~~~~~i~~~~~d~~~~-~---  171 (275)
T PRK09328        105 LLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH---------GLGARVEFLQGDWFEP-L---  171 (275)
T ss_pred             cccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh---------CCCCcEEEEEccccCc-C---
Confidence            3456789999999999998888764 356899999999999999998651         1234689999998542 1   


Q ss_pred             cCCCCCeeEEEEcccccc------c----------------CCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          160 LADDAPFDICSCQFAMHY------S----------------WSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~------~----------------~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                        +.++||+|+++....-      +                ....+....++.++.++|+|||.+++.+..
T Consensus       172 --~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~  240 (275)
T PRK09328        172 --PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY  240 (275)
T ss_pred             --CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc
Confidence              3478999998642210      0                011244578899999999999999998743

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.34  E-value=1.2e-11  Score=96.21  Aligned_cols=111  Identities=14%  Similarity=0.125  Sum_probs=80.9

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      .++..+...++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++..           ..+++++++|+.++
T Consensus         4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~-----------~~~v~ii~~D~~~~   71 (169)
T smart00650        4 KIVRAANLRPGDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA-----------ADNLTVIHGDALKF   71 (169)
T ss_pred             HHHHhcCCCCcCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc-----------CCCEEEEECchhcC
Confidence            3445555567789999999999999998876 56899999999999999988752           23689999999888


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +.     ++..||.|+++..++ .  ..+....++...  .+.++|.+++...
T Consensus        72 ~~-----~~~~~d~vi~n~Py~-~--~~~~i~~~l~~~--~~~~~~~l~~q~e  114 (169)
T smart00650       72 DL-----PKLQPYKVVGNLPYN-I--STPILFKLLEEP--PAFRDAVLMVQKE  114 (169)
T ss_pred             Cc-----cccCCCEEEECCCcc-c--HHHHHHHHHhcC--CCcceEEEEEEHH
Confidence            75     455799999876554 2  233334443321  2457888887543

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.34  E-value=1.8e-11  Score=108.45  Aligned_cols=116  Identities=16%  Similarity=0.129  Sum_probs=86.2

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +.+.++.+|||+|||+|..+..++..  ..+.|+++|+|+.+++.+++++...+.         .++.+.++|+..++..
T Consensus       233 l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~---------~~v~~~~~Da~~l~~~  303 (431)
T PRK14903        233 MELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL---------SSIEIKIADAERLTEY  303 (431)
T ss_pred             hCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC---------CeEEEEECchhhhhhh
Confidence            34568889999999999998888763  356899999999999999999874332         2488999998776410


Q ss_pred             cccCCCCCeeEEEEcccc---cccCC--------CH-------HHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          158 KVLADDAPFDICSCQFAM---HYSWS--------TE-------ARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l---~~~~~--------~~-------~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                          ..++||.|++....   ..+-.        +.       ..+.+++.++.+.|+|||.++.++..
T Consensus       304 ----~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs  368 (431)
T PRK14903        304 ----VQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT  368 (431)
T ss_pred             ----hhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence                35689999975322   11100        11       23577899999999999999988764

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.33  E-value=2.1e-11  Score=108.84  Aligned_cols=113  Identities=19%  Similarity=0.206  Sum_probs=84.1

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ...++.+|||+|||+|..+..++..  ..+.|+++|+|+.+++.+++++...+.         .+++++++|+..+.   
T Consensus       247 ~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~---------~~v~~~~~Da~~~~---  314 (445)
T PRK14904        247 NPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI---------TIIETIEGDARSFS---  314 (445)
T ss_pred             CCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC---------CeEEEEeCcccccc---
Confidence            4457889999999999988777652  345899999999999999999874332         24899999987764   


Q ss_pred             ccCCCCCeeEEEEcc------ccccc-----CCCHH-------HHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          159 VLADDAPFDICSCQF------AMHYS-----WSTEA-------RARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~------~l~~~-----~~~~~-------~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                         ++++||+|++..      .+...     ..+.+       .+..++.++.++|+|||++++++..
T Consensus       315 ---~~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs  379 (445)
T PRK14904        315 ---PEEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS  379 (445)
T ss_pred             ---cCCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence               356899999642      11100     00222       3457899999999999999998854

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.33  E-value=3e-11  Score=107.26  Aligned_cols=115  Identities=24%  Similarity=0.289  Sum_probs=84.1

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      +.+.++.+|||+|||+|..+..++... .+.|+++|+++.+++.+++++...          +.++.++++|+...+.. 
T Consensus       240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~----------g~~~~~~~~D~~~~~~~-  308 (427)
T PRK10901        240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL----------GLKATVIVGDARDPAQW-  308 (427)
T ss_pred             cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc----------CCCeEEEEcCcccchhh-
Confidence            345688999999999999998887643 358999999999999999988732          22467899998765310 


Q ss_pred             ccCCCCCeeEEEEccccc------cc-----CCCH-------HHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          159 VLADDAPFDICSCQFAMH------YS-----WSTE-------ARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~------~~-----~~~~-------~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                        .+.++||.|++.....      +-     ....       ..+.+++..+.++|+|||.+++++.
T Consensus       309 --~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc  373 (427)
T PRK10901        309 --WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC  373 (427)
T ss_pred             --cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence              1356899999644211      00     0112       2245789999999999999998774

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=99.32  E-value=2.4e-11  Score=96.29  Aligned_cols=123  Identities=18%  Similarity=0.259  Sum_probs=86.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ......+||||||.|.++..++. .+...++|+|++...+..+.+++...+         ..|+.++++|+..+- ... 
T Consensus        15 ~~~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~---------l~Nv~~~~~da~~~l-~~~-   83 (195)
T PF02390_consen   15 GNDNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRG---------LKNVRFLRGDARELL-RRL-   83 (195)
T ss_dssp             TSCCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHT---------TSSEEEEES-CTTHH-HHH-
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhc---------ccceEEEEccHHHHH-hhc-
Confidence            34455899999999999999987 456679999999999999988887433         456999999987732 111 


Q ss_pred             CCCCCeeEEEEcccccccCCC----HHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHH
Q 024797          161 ADDAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPDANVIIKK  215 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~  215 (262)
                      .+++++|.|++++.--|....    .--...++..++++|+|||.+.+.+.+.++....
T Consensus        84 ~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~  142 (195)
T PF02390_consen   84 FPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWM  142 (195)
T ss_dssp             STTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHH
T ss_pred             ccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHH
Confidence            257899999987733221000    0012678999999999999999999887665433

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.32  E-value=1.2e-11  Score=102.98  Aligned_cols=115  Identities=17%  Similarity=0.139  Sum_probs=84.7

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +.+.++.+|||+|||+|..+..++..  ..+.|+++|+++.+++.+++++...+.         .++.+++.|+..++. 
T Consensus        67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~---------~~v~~~~~D~~~~~~-  136 (264)
T TIGR00446        67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV---------LNVAVTNFDGRVFGA-  136 (264)
T ss_pred             hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---------CcEEEecCCHHHhhh-
Confidence            34568899999999999999887663  345899999999999999999874322         348899999876543 


Q ss_pred             cccCCCCCeeEEEEccc------ccccC-----CCH-------HHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          158 KVLADDAPFDICSCQFA------MHYSW-----STE-------ARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~------l~~~~-----~~~-------~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                          ..+.||.|++...      +.+-.     -+.       ..+..+|..+.+.|+|||+|+.++..
T Consensus       137 ----~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs  201 (264)
T TIGR00446       137 ----AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCS  201 (264)
T ss_pred             ----hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence                3456999997531      11100     011       13466999999999999999888653

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.32  E-value=4.2e-11  Score=98.86  Aligned_cols=138  Identities=20%  Similarity=0.268  Sum_probs=98.6

Q ss_pred             cHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCcc
Q 024797           54 TLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDAD  132 (262)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~  132 (262)
                      ..........|+...+..=-+.++..+....+.+|||+|||.|-++..+++. +..+++.+|+|..+++.|++++...+ 
T Consensus       128 ~~~~~t~pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~-  206 (300)
T COG2813         128 ELTFKTLPGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANG-  206 (300)
T ss_pred             ceEEEeCCCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcC-
Confidence            3334445556666666555566666666666779999999999999998874 56689999999999999999987422 


Q ss_pred             ccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCC-HHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          133 HHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST-EARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       133 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                              ..+..+...|..+--       .++||+|+|+--+|--... ..-..+++....+.|++||.|.+...
T Consensus       207 --------~~~~~v~~s~~~~~v-------~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         207 --------VENTEVWASNLYEPV-------EGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             --------CCccEEEEecccccc-------cccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence                    222355666655432       3499999999877632111 11235899999999999999987754

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.32  E-value=9.3e-12  Score=100.61  Aligned_cols=116  Identities=19%  Similarity=0.214  Sum_probs=88.7

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ....+|||+|||+|..++.+++. ...+++|||+.+++.+.|++...        .+.+..+++++++|+.++....   
T Consensus        43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~--------ln~l~~ri~v~~~Di~~~~~~~---  111 (248)
T COG4123          43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVA--------LNPLEERIQVIEADIKEFLKAL---  111 (248)
T ss_pred             ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHH--------hCcchhceeEehhhHHHhhhcc---
Confidence            34779999999999999888765 44689999999999999999887        3456788999999998765321   


Q ss_pred             CCCCeeEEEEccccccc----C----------CCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          162 DDAPFDICSCQFAMHYS----W----------STEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~----~----------~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ...+||+|+|+--..-.    .          ...-+.+.+++.+.+.||+||.+.+..+-.
T Consensus       112 ~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~e  173 (248)
T COG4123         112 VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPE  173 (248)
T ss_pred             cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHH
Confidence            23579999997532111    0          011235788999999999999998876543

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.31  E-value=7e-12  Score=96.48  Aligned_cols=82  Identities=21%  Similarity=0.301  Sum_probs=67.2

Q ss_pred             EEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHH
Q 024797          111 VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA  190 (262)
Q Consensus       111 ~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~  190 (262)
                      +|+|+|++|++.|+++.....      .....+++++++|+.++++     ++++||+|++.++++++    .++..+++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~------~~~~~~i~~~~~d~~~lp~-----~~~~fD~v~~~~~l~~~----~d~~~~l~   65 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKA------RSCYKCIEWIEGDAIDLPF-----DDCEFDAVTMGYGLRNV----VDRLRAMK   65 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhccc------ccCCCceEEEEechhhCCC-----CCCCeeEEEecchhhcC----CCHHHHHH
Confidence            489999999999987654110      1112368999999999887     67899999999999987    67889999


Q ss_pred             HHHhccCCCcEEEEEeC
Q 024797          191 NVSALLRPGGTFIGTMP  207 (262)
Q Consensus       191 ~~~~~L~~gG~li~~~~  207 (262)
                      +++++|||||.+++...
T Consensus        66 ei~rvLkpGG~l~i~d~   82 (160)
T PLN02232         66 EMYRVLKPGSRVSILDF   82 (160)
T ss_pred             HHHHHcCcCeEEEEEEC
Confidence            99999999999987643

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.28  E-value=3.2e-11  Score=105.43  Aligned_cols=116  Identities=15%  Similarity=0.137  Sum_probs=82.6

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-CCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|.++...+..+..+|+++|+|+.+++.|++++...        ++. .+++++++|+.+... ....
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~N--------gl~~~~v~~i~~D~~~~l~-~~~~  289 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN--------KLDLSKAEFVRDDVFKLLR-TYRD  289 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCCcEEEEEccHHHHHH-HHHh
Confidence            367899999999999888766555668999999999999999988732        222 368999999876521 1100


Q ss_pred             CCCCeeEEEEccccccc-----CCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          162 DDAPFDICSCQFAMHYS-----WSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~-----~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ..++||+|+++--..--     .........++..+.++|+|||.++.+..
T Consensus       290 ~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             cCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            24589999987532100     00112455667788999999999987654

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.28  E-value=2.4e-11  Score=96.00  Aligned_cols=115  Identities=17%  Similarity=0.223  Sum_probs=73.3

Q ss_pred             CCCeEEEecCCCCcchHHH----Hh---cCC---CeEEEEeCChhHHHHHHHHhc-cCccc---------cc-cc-----
Q 024797           84 RGDVVLDLACGKGGDLIKW----DK---AKI---GYYVGIDIAEGSIEDCRTRYN-GDADH---------HQ-RR-----  137 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l----~~---~~~---~~v~gvD~s~~~~~~a~~~~~-~~~~~---------~~-~~-----  137 (262)
                      +..+|+-+||++|.-.-.+    ..   ...   -+++|+|+|+.+++.|++..- .....         .. ..     
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            4569999999999843322    12   112   269999999999999987531 11110         00 00     


Q ss_pred             ---cCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          138 ---KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       138 ---~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                         ..+..+|.|.+.|+.+.+.     +.+.||+|+|.+++.|+  +.+.+.++++.+++.|+|||+|++.
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~-----~~~~fD~I~CRNVlIYF--~~~~~~~vl~~l~~~L~pgG~L~lG  174 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDP-----PFGRFDLIFCRNVLIYF--DPETQQRVLRRLHRSLKPGGYLFLG  174 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S-----------EEEEEE-SSGGGS---HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred             eEChHHcCceEEEecccCCCCc-----ccCCccEEEecCEEEEe--CHHHHHHHHHHHHHHcCCCCEEEEe
Confidence               1122468999999887222     46899999999999999  8889999999999999999999985

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PHA03411 putative methyltransferase; Provisional

Probab=99.27  E-value=4.2e-11  Score=98.24  Aligned_cols=104  Identities=17%  Similarity=0.123  Sum_probs=78.7

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ....+|||+|||+|.++..++... ..+++|+|+++.|++.++++..              ++.++++|+.++..     
T Consensus        63 ~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~--------------~v~~v~~D~~e~~~-----  123 (279)
T PHA03411         63 HCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLP--------------EAEWITSDVFEFES-----  123 (279)
T ss_pred             ccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc--------------CCEEEECchhhhcc-----
Confidence            345799999999998888776542 4589999999999999988643              37899999987642     


Q ss_pred             CCCCeeEEEEcccccccCCC-HHH---------------HHHHHHHHHhccCCCcEEEEEe
Q 024797          162 DDAPFDICSCQFAMHYSWST-EAR---------------ARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~-~~~---------------~~~~l~~~~~~L~~gG~li~~~  206 (262)
                       ..+||+|+++..+.+.... ..+               ...++.....+|+|+|.+++..
T Consensus       124 -~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y  183 (279)
T PHA03411        124 -NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY  183 (279)
T ss_pred             -cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence             4689999998877764111 011               2456777889999999876654

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.27  E-value=6.1e-11  Score=96.79  Aligned_cols=108  Identities=17%  Similarity=0.150  Sum_probs=82.3

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .++.+|||+|||+|..+..++..  ..++++++|+++++++.|++++...        ++..+++++.+|+.+.- ..+.
T Consensus        67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~--------gl~~~i~~~~gda~~~L-~~l~  137 (234)
T PLN02781         67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA--------GVDHKINFIQSDALSAL-DQLL  137 (234)
T ss_pred             hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEEccHHHHH-HHHH
Confidence            46789999999999877776653  4568999999999999999998743        33456999999986641 1110


Q ss_pred             --CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                        .+.++||+|++...       .+....++..+.+.|+|||.+++..
T Consensus       138 ~~~~~~~fD~VfiDa~-------k~~y~~~~~~~~~ll~~GG~ii~dn  178 (234)
T PLN02781        138 NNDPKPEFDFAFVDAD-------KPNYVHFHEQLLKLVKVGGIIAFDN  178 (234)
T ss_pred             hCCCCCCCCEEEECCC-------HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence              02468999987652       2455678899999999999998753

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.26  E-value=4.9e-11  Score=111.80  Aligned_cols=113  Identities=19%  Similarity=0.242  Sum_probs=86.3

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-CCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...        +.. .+++++++|+.+....    .
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~n--------g~~~~~v~~i~~D~~~~l~~----~  605 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALN--------GLSGRQHRLIQADCLAWLKE----A  605 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--------CCCccceEEEEccHHHHHHH----c
Confidence            57899999999999999988776667999999999999999998732        222 4689999998764210    1


Q ss_pred             CCCeeEEEEccccc-------ccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          163 DAPFDICSCQFAMH-------YSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       163 ~~~fD~V~~~~~l~-------~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .++||+|+++--..       ..+....+...++..+.++|+|||.+++++..
T Consensus       606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~  658 (702)
T PRK11783        606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNK  658 (702)
T ss_pred             CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            46899999864210       11123456778899999999999999887643

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.25  E-value=1e-10  Score=105.55  Aligned_cols=110  Identities=17%  Similarity=0.148  Sum_probs=81.2

Q ss_pred             CCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      +.+|||+|||+|.++..++.. +..+++++|+|+.+++.|+++....        +...++.++++|+.+. .     +.
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~--------~l~~~v~~~~~D~~~~-~-----~~  204 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY--------EVTDRIQIIHSNWFEN-I-----EK  204 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc--------CCccceeeeecchhhh-C-----cC
Confidence            468999999999998887754 4568999999999999999987632        2234688999997542 2     34


Q ss_pred             CCeeEEEEccccc--------------cc--------CCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          164 APFDICSCQFAMH--------------YS--------WSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       164 ~~fD~V~~~~~l~--------------~~--------~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ++||+|+++-...              |-        -+..+....++..+.++|+|||.+++.+..
T Consensus       205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~  271 (506)
T PRK01544        205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF  271 (506)
T ss_pred             CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC
Confidence            6899999864211              10        001234567888999999999999988753

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.25  E-value=1.8e-10  Score=94.98  Aligned_cols=109  Identities=21%  Similarity=0.213  Sum_probs=78.2

Q ss_pred             CCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      +.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++...            .++++++|+.+... ..  ..
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------------~~~~~~~D~~~~l~-~~--~~  151 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------------GGTVHEGDLYDALP-TA--LR  151 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------------CCEEEEeechhhcc-hh--cC
Confidence            458999999999999888754 3447999999999999999987621            14688888765321 00  13


Q ss_pred             CCeeEEEEccccc------ccC----------------CCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          164 APFDICSCQFAMH------YSW----------------STEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       164 ~~fD~V~~~~~l~------~~~----------------~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ++||+|+++--..      .+.                +..+....++..+.++|+|||.+++.+..
T Consensus       152 ~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~  218 (251)
T TIGR03704       152 GRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE  218 (251)
T ss_pred             CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            5799999875321      110                01123467888899999999999988754

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.24  E-value=9.3e-11  Score=104.12  Aligned_cols=119  Identities=18%  Similarity=0.157  Sum_probs=83.6

Q ss_pred             HHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           79 QLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      .+.+.++.+|||+|||+|..+..+++. +.++++++|+++++++.+++++...+.        ...+.+..+|....+..
T Consensus       233 ~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~--------~~~v~~~~~d~~~~~~~  304 (426)
T TIGR00563       233 WLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGL--------TIKAETKDGDGRGPSQW  304 (426)
T ss_pred             HhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCC--------CeEEEEecccccccccc
Confidence            345668899999999999999888763 356899999999999999998874321        22244466676543210


Q ss_pred             cccCCCCCeeEEEEcc------cccccCC-----CH-------HHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          158 KVLADDAPFDICSCQF------AMHYSWS-----TE-------ARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~------~l~~~~~-----~~-------~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                         .+.++||.|++..      ++.+..+     ++       ..+..+|.++.++|||||.++.++..
T Consensus       305 ---~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs  370 (426)
T TIGR00563       305 ---AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS  370 (426)
T ss_pred             ---ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence               1356899999642      3332210     11       12578999999999999999988753

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.24  E-value=1.2e-10  Score=104.12  Aligned_cols=115  Identities=21%  Similarity=0.197  Sum_probs=83.9

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +...++.+|||+|||+|..+..++..  +.+.++++|+++.+++.+++++...+.         .++.++++|+..+...
T Consensus       246 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~---------~~v~~~~~D~~~~~~~  316 (444)
T PRK14902        246 LDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL---------TNIETKALDARKVHEK  316 (444)
T ss_pred             hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---------CeEEEEeCCcccccch
Confidence            34467889999999999999888763  456899999999999999998874322         2389999998775310


Q ss_pred             cccCCCCCeeEEEEcccc------ccc-----CCCHH-------HHHHHHHHHHhccCCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQFAM------HYS-----WSTEA-------RARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l------~~~-----~~~~~-------~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                          -.+.||+|++....      .+.     ..+..       .+..++..+.++|+|||.++.++.
T Consensus       317 ----~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystc  380 (444)
T PRK14902        317 ----FAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTC  380 (444)
T ss_pred             ----hcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence                12689999986421      110     00111       235689999999999999997664

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.24  E-value=1.1e-10  Score=95.18  Aligned_cols=123  Identities=20%  Similarity=0.278  Sum_probs=91.7

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      .++..+.+.||.+|||.|.|+|.++..+++  .+.++|+.+|+.++.++.|++++...        ++..++.+.+.|+.
T Consensus        31 ~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~--------gl~~~v~~~~~Dv~  102 (247)
T PF08704_consen   31 YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH--------GLDDNVTVHHRDVC  102 (247)
T ss_dssp             HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT--------TCCTTEEEEES-GG
T ss_pred             HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc--------CCCCCceeEeccee
Confidence            355566778999999999999999999986  47789999999999999999998853        44567999999986


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhcc-CCCcEEEEEeCChHHHHHHH
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL-RPGGTFIGTMPDANVIIKKL  216 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L-~~gG~li~~~~~~~~~~~~~  216 (262)
                      ..-+...  .+..+|.|++..         +++..++..+.++| ++||++++-.|..+...+-+
T Consensus       103 ~~g~~~~--~~~~~DavfLDl---------p~Pw~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~  156 (247)
T PF08704_consen  103 EEGFDEE--LESDFDAVFLDL---------PDPWEAIPHAKRALKKPGGRICCFSPCIEQVQKTV  156 (247)
T ss_dssp             CG--STT---TTSEEEEEEES---------SSGGGGHHHHHHHE-EEEEEEEEEESSHHHHHHHH
T ss_pred             ccccccc--ccCcccEEEEeC---------CCHHHHHHHHHHHHhcCCceEEEECCCHHHHHHHH
Confidence            5333100  146899998755         44566889999999 89999999999988664443

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>TIGR00417 speE spermidine synthase

Probab=99.22  E-value=3.5e-10  Score=94.45  Aligned_cols=115  Identities=19%  Similarity=0.165  Sum_probs=82.6

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..+.+||++|||+|..+..+++.. ..+++++|+++++++.+++.+...+.     .-...+++++.+|+...-..    
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~-----~~~~~~v~i~~~D~~~~l~~----  141 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAG-----SYDDPRVDLQIDDGFKFLAD----  141 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcc-----cccCCceEEEECchHHHHHh----
Confidence            445699999999999888877654 56799999999999999997753210     00124578888887653211    


Q ss_pred             CCCCeeEEEEcccccccCCCHHH--HHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEAR--ARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~--~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ..++||+|++.......  ....  ...+++.+.+.|+|||.+++...+
T Consensus       142 ~~~~yDvIi~D~~~~~~--~~~~l~~~ef~~~~~~~L~pgG~lv~~~~~  188 (270)
T TIGR00417       142 TENTFDVIIVDSTDPVG--PAETLFTKEFYELLKKALNEDGIFVAQSES  188 (270)
T ss_pred             CCCCccEEEEeCCCCCC--cccchhHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            25789999987653221  1112  467889999999999999987554

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.21  E-value=1.5e-10  Score=103.32  Aligned_cols=126  Identities=17%  Similarity=0.163  Sum_probs=85.7

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      ++..++..+...++.+|||+|||+|.++..+++.. ..|+|+|+|+.|++.|++++...+         ..+++++++|+
T Consensus       285 l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~---------~~~v~~~~~d~  354 (443)
T PRK13168        285 MVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNG---------LDNVTFYHANL  354 (443)
T ss_pred             HHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcC---------CCceEEEEeCh
Confidence            34444444445677899999999999998887654 589999999999999999876322         23589999998


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHh
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR  217 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~  217 (262)
                      .+... .....+++||+|+++-.-.-       ....+..+.+ ++|++.+++++ |+..+.+.+.
T Consensus       355 ~~~l~-~~~~~~~~fD~Vi~dPPr~g-------~~~~~~~l~~-~~~~~ivyvSC-np~tlaRDl~  410 (443)
T PRK13168        355 EEDFT-DQPWALGGFDKVLLDPPRAG-------AAEVMQALAK-LGPKRIVYVSC-NPATLARDAG  410 (443)
T ss_pred             HHhhh-hhhhhcCCCCEEEECcCCcC-------hHHHHHHHHh-cCCCeEEEEEe-ChHHhhccHH
Confidence            65321 00013467999998654321       2344555555 68899888886 5555544443

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.20  E-value=5.8e-10  Score=89.98  Aligned_cols=130  Identities=15%  Similarity=0.109  Sum_probs=90.2

Q ss_pred             HHHHHHHHHH---HhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeE
Q 024797           70 NNWIKSVLVQ---LYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR  145 (262)
Q Consensus        70 ~~~~~~~l~~---~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~  145 (262)
                      .+|+..++..   .....+..|||+|||+|..+..++.. +...++++|.|+.++..|.+++..+        .+...+.
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~--------~l~g~i~  202 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL--------KLSGRIE  202 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH--------hhcCceE
Confidence            3455555443   33446678999999999999988763 5668999999999999999988743        3344566


Q ss_pred             EEeCcccccccccccCCCCCeeEEEEccccc----------------------ccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          146 LICGDCYEVHLDKVLADDAPFDICSCQFAMH----------------------YSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       146 ~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~----------------------~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                      ++..+++.-.........++.|+++++--..                      --.+..+....++.-+.|+|+|||.+.
T Consensus       203 v~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~  282 (328)
T KOG2904|consen  203 VIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQ  282 (328)
T ss_pred             EEecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEE
Confidence            6655554332222212568999999874211                      001233456778888999999999999


Q ss_pred             EEeC
Q 024797          204 GTMP  207 (262)
Q Consensus       204 ~~~~  207 (262)
                      +.+.
T Consensus       283 le~~  286 (328)
T KOG2904|consen  283 LELV  286 (328)
T ss_pred             EEec
Confidence            9875

>PRK01581 speE spermidine synthase; Validated

Probab=99.19  E-value=1.9e-10  Score=97.96  Aligned_cols=120  Identities=16%  Similarity=0.114  Sum_probs=83.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHH--hccCccccccccCCCCCeEEEeCccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTR--YNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ...+.+||++|||.|..+..+++.. ..++++||+++++++.|++.  +.+.+.    ..-...+++++.+|+..+-.. 
T Consensus       148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~----~~~~DpRV~vvi~Da~~fL~~-  222 (374)
T PRK01581        148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNK----SAFFDNRVNVHVCDAKEFLSS-  222 (374)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcc----ccCCCCceEEEECcHHHHHHh-
Confidence            3456799999999998888887753 56899999999999999962  111000    001145799999998874321 


Q ss_pred             ccCCCCCeeEEEEccccccc-CCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          159 VLADDAPFDICSCQFAMHYS-WSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~-~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                         ..++||+|++...-... ....-.-..+++.+++.|+|||++++...++
T Consensus       223 ---~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp  271 (374)
T PRK01581        223 ---PSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSP  271 (374)
T ss_pred             ---cCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecCCh
Confidence               35689999988521100 0011223678999999999999998875444

>PLN02366 spermidine synthase

Probab=99.19  E-value=3e-10  Score=96.01  Aligned_cols=117  Identities=19%  Similarity=0.142  Sum_probs=84.5

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...+.+||+||||.|..+..+++.+ ..+++.+|+++.+++.|++.+...+.     ..-..+++++.+|+...-..   
T Consensus        89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~-----~~~dpRv~vi~~Da~~~l~~---  160 (308)
T PLN02366         89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAV-----GFDDPRVNLHIGDGVEFLKN---  160 (308)
T ss_pred             CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhcc-----ccCCCceEEEEChHHHHHhh---
Confidence            3567899999999999998888764 46799999999999999998763211     01145799999998654210   


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .+.++||+|++...-.+.....-.-..+++.+++.|+|||.++.-.
T Consensus       161 ~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        161 APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            0256899999876443321111124678999999999999998743

>PHA03412 putative methyltransferase; Provisional

Probab=99.18  E-value=1.6e-10  Score=92.73  Aligned_cols=98  Identities=17%  Similarity=0.192  Sum_probs=73.1

Q ss_pred             CCCeEEEecCCCCcchHHHHhc----CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      .+.+|||+|||+|.++..+++.    ....++++|+++.+++.|+++..              ++.++++|+...+.   
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~--------------~~~~~~~D~~~~~~---  111 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP--------------EATWINADALTTEF---  111 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc--------------CCEEEEcchhcccc---
Confidence            4679999999999998877653    24479999999999999998754              37889999876543   


Q ss_pred             cCCCCCeeEEEEccccccc--------CCCHHHHHHHHHHHHhccCCCcE
Q 024797          160 LADDAPFDICSCQFAMHYS--------WSTEARARRALANVSALLRPGGT  201 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~--------~~~~~~~~~~l~~~~~~L~~gG~  201 (262)
                         +++||+|+++--+.-.        .........++..+.+++++|+.
T Consensus       112 ---~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        112 ---DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             ---cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence               4689999998643311        01223356688888887777775

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.17  E-value=6e-10  Score=88.42  Aligned_cols=108  Identities=7%  Similarity=-0.023  Sum_probs=78.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..++.....+|+++|+++.+++.+++++...+         ..++.++++|+.+....    .
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~---------~~~v~~~~~D~~~~l~~----~  118 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLK---------AGNARVVNTNALSFLAQ----P  118 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhC---------CCcEEEEEchHHHHHhh----c
Confidence            3577999999999999986555556689999999999999999876322         12589999998653210    2


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHh--ccCCCcEEEEEeCC
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPD  208 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~--~L~~gG~li~~~~~  208 (262)
                      ..+||+|+++--+..     .....++..+..  +|.|+|.++++.+.
T Consensus       119 ~~~fDlV~~DPPy~~-----g~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        119 GTPHNVVFVDPPFRK-----GLLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             CCCceEEEECCCCCC-----ChHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            356999998876431     123445555544  48999999998764

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=1.4e-09  Score=90.96  Aligned_cols=105  Identities=21%  Similarity=0.286  Sum_probs=78.7

Q ss_pred             eEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCC
Q 024797           87 VVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP  165 (262)
Q Consensus        87 ~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  165 (262)
                      +|||+|||+|..+..++... ...|+|+|+|+.+++.|++++...+        + .++.++++|+..--       .++
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~--------l-~~~~~~~~dlf~~~-------~~~  176 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNG--------L-VRVLVVQSDLFEPL-------RGK  176 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcC--------C-ccEEEEeeeccccc-------CCc
Confidence            79999999999999887643 3489999999999999999987432        2 34666677765532       358


Q ss_pred             eeEEEEccccc-----cc----------------CCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          166 FDICSCQFAMH-----YS----------------WSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       166 fD~V~~~~~l~-----~~----------------~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ||+|+++--..     +.                .+..+....++.++.+.|+|||.+++...
T Consensus       177 fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g  239 (280)
T COG2890         177 FDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG  239 (280)
T ss_pred             eeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence            99999874110     00                01234568889999999999999999876

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.16  E-value=3.7e-10  Score=92.87  Aligned_cols=98  Identities=20%  Similarity=0.232  Sum_probs=79.6

Q ss_pred             cCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .+..+|||||+|.|.++..+++ .+.-+++.+|+ +.+++.+++ .              .+++++.+|+. -++     
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-~--------------~rv~~~~gd~f-~~~-----  156 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-A--------------DRVEFVPGDFF-DPL-----  156 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-T--------------TTEEEEES-TT-TCC-----
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-c--------------cccccccccHH-hhh-----
Confidence            4556899999999999999887 45668999998 778888887 2              25999999998 444     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC--cEEEEEe
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG--GTFIGTM  206 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g--G~li~~~  206 (262)
                      |.  +|++++..++|++  +.++...+|+++++.|+||  |+|+|..
T Consensus       157 P~--~D~~~l~~vLh~~--~d~~~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  157 PV--ADVYLLRHVLHDW--SDEDCVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             SS--ESEEEEESSGGGS---HHHHHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             cc--ccceeeehhhhhc--chHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence            33  9999999999998  8899999999999999999  9988753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.16  E-value=2.1e-10  Score=90.86  Aligned_cols=121  Identities=21%  Similarity=0.273  Sum_probs=77.7

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCcccccccc------------------------
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK------------------------  138 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~------------------------  138 (262)
                      .+..+|||||..|.++..+++. +...++|+||++..+..|++.+...........                        
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~  137 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF  137 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence            5678999999999999999874 555699999999999999998753211100000                        


Q ss_pred             --CCCCCeEEEeCccccccccc-ccCCCCCeeEEEEcccccccC--CCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          139 --KFSFPARLICGDCYEVHLDK-VLADDAPFDICSCQFAMHYSW--STEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       139 --~~~~~v~~~~~d~~~~~~~~-~~~~~~~fD~V~~~~~l~~~~--~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        ..+.++.|...+..- .-.+ +......||+|+|..+-.++.  -..+-...+++++.+.|.|||+||+.
T Consensus       138 t~~~p~n~~f~~~n~vl-e~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvE  208 (288)
T KOG2899|consen  138 TTDFPDNVWFQKENYVL-ESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVE  208 (288)
T ss_pred             cccCCcchhcccccEEE-ecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEc
Confidence              111111111111000 0000 001357899999987543331  23456899999999999999999986

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=99.16  E-value=1.9e-10  Score=96.31  Aligned_cols=117  Identities=17%  Similarity=0.186  Sum_probs=88.2

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      +...++..-+.-.+.+|||+|||+|.++.+.++++..+|+++|.|. +++.|.+....        +++...++++++.+
T Consensus        48 Yr~~i~~n~~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~--------N~~~~ii~vi~gkv  118 (346)
T KOG1499|consen   48 YRNAILQNKHLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKD--------NGLEDVITVIKGKV  118 (346)
T ss_pred             HHHHHhcchhhcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHh--------cCccceEEEeecce
Confidence            3344444444568899999999999999999888888999999987 55888887763        34455689999999


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                      .++.+     |.+++|+|++-+.=..++ -..-+..++-.--++|+|||.++
T Consensus       119 Edi~L-----P~eKVDiIvSEWMGy~Ll-~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  119 EDIEL-----PVEKVDIIVSEWMGYFLL-YESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             EEEec-----CccceeEEeehhhhHHHH-HhhhhhhhhhhhhhccCCCceEc
Confidence            98876     578999999865322211 12235667777889999999976

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=99.16  E-value=4.3e-10  Score=93.81  Aligned_cols=116  Identities=17%  Similarity=0.174  Sum_probs=83.7

Q ss_pred             CCeEEEecCCCCcchHHH----Hhc-----CCCeEEEEeCChhHHHHHHHHhcc-C---ccc------ccc---------
Q 024797           85 GDVVLDLACGKGGDLIKW----DKA-----KIGYYVGIDIAEGSIEDCRTRYNG-D---ADH------HQR---------  136 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l----~~~-----~~~~v~gvD~s~~~~~~a~~~~~~-~---~~~------~~~---------  136 (262)
                      .-+|+..||++|.-.-.+    ...     ..-+|+|+|+|+.+++.|++..-. .   +..      .+.         
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            469999999999843222    121     123699999999999999876311 0   000      000         


Q ss_pred             ---ccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          137 ---RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       137 ---~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                         ...+...|.|.+.|+.+.++.    +.+.||+|+|.+++.|+  +.+...+++..+++.|+|||+|++..
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~----~~~~fD~I~cRNvliyF--~~~~~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWA----VPGPFDAIFCRNVMIYF--DKTTQERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCc----cCCCcceeeHhhHHhcC--CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence               012335688999998764431    35789999999999999  88899999999999999999988753

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.16  E-value=3.1e-10  Score=87.07  Aligned_cols=75  Identities=20%  Similarity=0.220  Sum_probs=63.3

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .-.+.+|+|+|||||.++...+..+..+|+|+|+++++++.++++..+          +..++.|+++|+.++.      
T Consensus        43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~----------l~g~v~f~~~dv~~~~------  106 (198)
T COG2263          43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE----------LLGDVEFVVADVSDFR------  106 (198)
T ss_pred             CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh----------hCCceEEEEcchhhcC------
Confidence            346778999999999999887777777999999999999999999873          3556999999998864      


Q ss_pred             CCCCeeEEEEccc
Q 024797          162 DDAPFDICSCQFA  174 (262)
Q Consensus       162 ~~~~fD~V~~~~~  174 (262)
                        +.+|.|+++--
T Consensus       107 --~~~dtvimNPP  117 (198)
T COG2263         107 --GKFDTVIMNPP  117 (198)
T ss_pred             --CccceEEECCC
Confidence              67888888753

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=99.14  E-value=6.3e-10  Score=89.71  Aligned_cols=118  Identities=21%  Similarity=0.285  Sum_probs=90.1

Q ss_pred             CeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           86 DVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      ..+||||||.|.++..+|+. +...++|||+....+..|.+++.+.++.         |+.+++.|+..+-.  .+.+++
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~---------Nlri~~~DA~~~l~--~~~~~~  118 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK---------NLRLLCGDAVEVLD--YLIPDG  118 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC---------cEEEEcCCHHHHHH--hcCCCC
Confidence            58999999999999999874 5557999999999999999988754322         69999999876421  122567


Q ss_pred             CeeEEEEcccccccCC----CHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHH
Q 024797          165 PFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMPDANVIIK  214 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~----~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~  214 (262)
                      +.|-|.+++.=-|...    -.--...+++.+.++|+|||.|.+.+.+.+++..
T Consensus       119 sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~y~e~  172 (227)
T COG0220         119 SLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEEYFEW  172 (227)
T ss_pred             CeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEecCHHHHHH
Confidence            9999998884433200    0001257899999999999999999988876655

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.14  E-value=4.9e-10  Score=95.66  Aligned_cols=112  Identities=14%  Similarity=0.136  Sum_probs=76.0

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ++.+|||+|||+|.++..++... ..|+|+|+|+.+++.|++++...+        . .+++++++|+.++...    ..
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~--------l-~~v~~~~~D~~~~~~~----~~  238 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELG--------L-TNVQFQALDSTQFATA----QG  238 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcC--------C-CceEEEEcCHHHHHHh----cC
Confidence            56899999999999999887644 589999999999999999886422        2 3599999999775421    23


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHh
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLR  217 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~  217 (262)
                      +.||+|+++-.-.-+      ...++ +....++|++.+++++ ++..+.+.+.
T Consensus       239 ~~~D~Vv~dPPr~G~------~~~~~-~~l~~~~~~~ivyvsc-~p~t~~rd~~  284 (315)
T PRK03522        239 EVPDLVLVNPPRRGI------GKELC-DYLSQMAPRFILYSSC-NAQTMAKDLA  284 (315)
T ss_pred             CCCeEEEECCCCCCc------cHHHH-HHHHHcCCCeEEEEEC-CcccchhHHh
Confidence            579999987432111      12222 2333467777666664 3333444433

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.13  E-value=6e-10  Score=93.76  Aligned_cols=130  Identities=22%  Similarity=0.318  Sum_probs=92.5

Q ss_pred             cccchhHHHHHHHHHHH-HhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC
Q 024797           63 IIHLKKLNNWIKSVLVQ-LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS  141 (262)
Q Consensus        63 ~~~~~~~~~~~~~~l~~-~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  141 (262)
                      .+.+..+..-+.+.+.+ ....+|..|||.-||||.++.....-+ .+++|+|++..|++-|+.++...++.        
T Consensus       175 f~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G-~~viG~Did~~mv~gak~Nl~~y~i~--------  245 (347)
T COG1041         175 FFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMG-ARVIGSDIDERMVRGAKINLEYYGIE--------  245 (347)
T ss_pred             ccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcC-ceEeecchHHHHHhhhhhhhhhhCcC--------
Confidence            33334444444444443 446788999999999999988763333 37999999999999999998854321        


Q ss_pred             CCeEEEeC-cccccccccccCCCCCeeEEEEccccccc----CCC-HHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          142 FPARLICG-DCYEVHLDKVLADDAPFDICSCQFAMHYS----WST-EARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       142 ~~v~~~~~-d~~~~~~~~~~~~~~~fD~V~~~~~l~~~----~~~-~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                       ...+... |+..+|+     +++++|.|++..-.--.    -.. .+...++++.++++|++||++++..|
T Consensus       246 -~~~~~~~~Da~~lpl-----~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         246 -DYPVLKVLDATNLPL-----RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             -ceeEEEecccccCCC-----CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence             2434444 9999987     56689999986522111    001 24578899999999999999999888

>PRK03612 spermidine synthase; Provisional

Probab=99.13  E-value=4.5e-10  Score=101.96  Aligned_cols=117  Identities=15%  Similarity=0.049  Sum_probs=82.8

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCC-CeEEEEeCChhHHHHHHHH--hccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTR--YNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      +++.+|||+|||+|..+..+++.+. .+++++|+++++++.++++  +.+.+..    .-...+++++.+|+.+.-..  
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~----~~~dprv~vi~~Da~~~l~~--  369 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGG----ALDDPRVTVVNDDAFNWLRK--  369 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhcc----ccCCCceEEEEChHHHHHHh--
Confidence            4678999999999998888877654 6899999999999999983  3211100    00135689999998764221  


Q ss_pred             cCCCCCeeEEEEcccccccCC-CHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          160 LADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                        .+++||+|+++........ ..-.-.++++.+.+.|+|||.+++...
T Consensus       370 --~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~  416 (521)
T PRK03612        370 --LAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQST  416 (521)
T ss_pred             --CCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecC
Confidence              3478999999864332100 001125688999999999999998654

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=99.12  E-value=4.8e-10  Score=90.53  Aligned_cols=95  Identities=18%  Similarity=0.214  Sum_probs=75.2

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ...++||||+|.|..+..++ ....+|+++|.|+.|....+++-                .+  +.+..++..     .+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~-~~f~~v~aTE~S~~Mr~rL~~kg----------------~~--vl~~~~w~~-----~~  149 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLA-PLFKEVYATEASPPMRWRLSKKG----------------FT--VLDIDDWQQ-----TD  149 (265)
T ss_pred             cCCceEEecCCCcHHHHHHH-hhcceEEeecCCHHHHHHHHhCC----------------Ce--EEehhhhhc-----cC
Confidence            45689999999999999885 45668999999999987776642                22  223333332     35


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .+||+|.|.+++...    .++..+|+.+++.|+|+|++++.+
T Consensus       150 ~~fDvIscLNvLDRc----~~P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  150 FKFDVISCLNVLDRC----DRPLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             CceEEEeehhhhhcc----CCHHHHHHHHHHHhCCCCEEEEEE
Confidence            689999999999877    778999999999999999998764

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=99.11  E-value=8.3e-10  Score=86.70  Aligned_cols=122  Identities=20%  Similarity=0.207  Sum_probs=85.5

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      +|.+.....+.+|||||||+|.++..+++. +.-...-.|.++..+.-.+....+.+..|     +.   .-+..|+...
T Consensus        17 vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~N-----v~---~P~~lDv~~~   88 (204)
T PF06080_consen   17 VLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPN-----VR---PPLALDVSAP   88 (204)
T ss_pred             HHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcc-----cC---CCeEeecCCC
Confidence            444443344446999999999999999874 44467889999988766666555433322     11   1345555444


Q ss_pred             ccccc---cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          155 HLDKV---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       155 ~~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +....   ....+.||+|+|.+++|.+  +....+.+|+.+.++|++||.|++.-|
T Consensus        89 ~w~~~~~~~~~~~~~D~i~~~N~lHI~--p~~~~~~lf~~a~~~L~~gG~L~~YGP  142 (204)
T PF06080_consen   89 PWPWELPAPLSPESFDAIFCINMLHIS--PWSAVEGLFAGAARLLKPGGLLFLYGP  142 (204)
T ss_pred             CCccccccccCCCCcceeeehhHHHhc--CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence            22111   0135689999999999977  888899999999999999999998643

The function of this family is unknown.

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=99.10  E-value=3.8e-10  Score=88.23  Aligned_cols=100  Identities=18%  Similarity=0.268  Sum_probs=62.4

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ++...|-|+|||.+.++..+  ...-.|...|+-..                        +-.+..+|+...|+     +
T Consensus        71 ~~~~viaD~GCGdA~la~~~--~~~~~V~SfDLva~------------------------n~~Vtacdia~vPL-----~  119 (219)
T PF05148_consen   71 PKSLVIADFGCGDAKLAKAV--PNKHKVHSFDLVAP------------------------NPRVTACDIANVPL-----E  119 (219)
T ss_dssp             -TTS-EEEES-TT-HHHHH----S---EEEEESS-S------------------------STTEEES-TTS-S-------
T ss_pred             CCCEEEEECCCchHHHHHhc--ccCceEEEeeccCC------------------------CCCEEEecCccCcC-----C
Confidence            34579999999999877554  22236999998541                        12367899999998     7


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe-----CChHHHHHHHhh
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM-----PDANVIIKKLRE  218 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~-----~~~~~~~~~~~~  218 (262)
                      ++++|++++..++..     .+...++.++.|+||+||.|.|.-     .+.+.+.+.+..
T Consensus       120 ~~svDv~VfcLSLMG-----Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~  175 (219)
T PF05148_consen  120 DESVDVAVFCLSLMG-----TNWPDFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKK  175 (219)
T ss_dssp             TT-EEEEEEES---S-----S-HHHHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHC
T ss_pred             CCceeEEEEEhhhhC-----CCcHHHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHH
Confidence            899999999888864     467889999999999999998764     344555555543

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PLN02476 O-methyltransferase

Probab=99.09  E-value=2.1e-09  Score=89.05  Aligned_cols=107  Identities=13%  Similarity=0.171  Sum_probs=83.8

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .++.+|||+|+|+|..+..++..  ..++++.+|.+++.++.|++.+...        ++..+++++.+|+.+.- ..+.
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a--------Gl~~~I~li~GdA~e~L-~~l~  187 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA--------GVSHKVNVKHGLAAESL-KSMI  187 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEEcCHHHHH-HHHH
Confidence            46789999999999988888763  3568999999999999999999854        33457999999986531 1110


Q ss_pred             --CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       161 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        ...++||+|++...       .......+..+.+.|+|||.+++.
T Consensus       188 ~~~~~~~FD~VFIDa~-------K~~Y~~y~e~~l~lL~~GGvIV~D  227 (278)
T PLN02476        188 QNGEGSSYDFAFVDAD-------KRMYQDYFELLLQLVRVGGVIVMD  227 (278)
T ss_pred             hcccCCCCCEEEECCC-------HHHHHHHHHHHHHhcCCCcEEEEe
Confidence              01368999998763       356788899999999999999986

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.07  E-value=3.2e-09  Score=83.14  Aligned_cols=128  Identities=23%  Similarity=0.244  Sum_probs=82.3

Q ss_pred             hhHHHHHHHHHHH-HhccCCCeEEEecCCCCcchHHHHh-cCCC---------eEEEEeCChhHHHHHHHHhccCccccc
Q 024797           67 KKLNNWIKSVLVQ-LYARRGDVVLDLACGKGGDLIKWDK-AKIG---------YYVGIDIAEGSIEDCRTRYNGDADHHQ  135 (262)
Q Consensus        67 ~~~~~~~~~~l~~-~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~---------~v~gvD~s~~~~~~a~~~~~~~~~~~~  135 (262)
                      ..++..+...+.. ....++..|||..||+|.++.+.+. ....         .++|+|+++++++.|++++...     
T Consensus        10 a~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a-----   84 (179)
T PF01170_consen   10 APLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA-----   84 (179)
T ss_dssp             TSS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-----
T ss_pred             CCCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-----
Confidence            4444555544443 3456788999999999999887654 2222         2899999999999999998743     


Q ss_pred             cccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCC----HHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       136 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                         +....+.+.++|+..++.     .++.+|+|+++.-.-.-...    .+-...+++++.++|++ ..++++..+
T Consensus        85 ---g~~~~i~~~~~D~~~l~~-----~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~  152 (179)
T PF01170_consen   85 ---GVEDYIDFIQWDARELPL-----PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSN  152 (179)
T ss_dssp             ---T-CGGEEEEE--GGGGGG-----TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESC
T ss_pred             ---ccCCceEEEecchhhccc-----ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECC
Confidence               334568999999999985     57899999998644322111    23346678999999999 444444443

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=99.06  E-value=1.2e-09  Score=94.44  Aligned_cols=118  Identities=19%  Similarity=0.219  Sum_probs=90.7

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      .|.+|||+-|=||.++...+..+..+|++||+|..+++.|++++.-.+..       ..++.|+++|+..+-- ......
T Consensus       217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~-------~~~~~~i~~Dvf~~l~-~~~~~g  288 (393)
T COG1092         217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLD-------GDRHRFIVGDVFKWLR-KAERRG  288 (393)
T ss_pred             cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCC-------ccceeeehhhHHHHHH-HHHhcC
Confidence            48999999999999999998888889999999999999999998743221       3458899999977532 111134


Q ss_pred             CCeeEEEEccc-c----cccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          164 APFDICSCQFA-M----HYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       164 ~~fD~V~~~~~-l----~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      .+||+|++.-. +    ...+....+...++..+.++|+|||.+++++...
T Consensus       289 ~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         289 EKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             CcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            58999998531 1    1113345778899999999999999999887643

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.05  E-value=5.7e-09  Score=91.12  Aligned_cols=115  Identities=14%  Similarity=0.103  Sum_probs=80.7

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..++.. ...|+|+|+++.+++.|++++...+        . .+++++++|+.+....    .
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~--------~-~~~~~~~~d~~~~~~~----~  297 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLG--------L-DNLSFAALDSAKFATA----Q  297 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcC--------C-CcEEEEECCHHHHHHh----c
Confidence            35679999999999999988754 3589999999999999999886322        1 3699999998764321    1


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhhh
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREV  219 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~  219 (262)
                      ..+||+|+++---..+      ...++..+. .++|++.+++++ |+..+.+.+..-
T Consensus       298 ~~~~D~vi~DPPr~G~------~~~~l~~l~-~~~p~~ivyvsc-~p~TlaRDl~~L  346 (374)
T TIGR02085       298 MSAPELVLVNPPRRGI------GKELCDYLS-QMAPKFILYSSC-NAQTMAKDIAEL  346 (374)
T ss_pred             CCCCCEEEECCCCCCC------cHHHHHHHH-hcCCCeEEEEEe-CHHHHHHHHHHh
Confidence            2459999987543322      234445454 478988887775 555665555543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=99.04  E-value=3.9e-09  Score=87.05  Aligned_cols=114  Identities=18%  Similarity=0.181  Sum_probs=83.6

Q ss_pred             CCeEEEecCCCCcchHHH----HhcC------CCeEEEEeCChhHHHHHHHHhcc-----Cccc------cccc------
Q 024797           85 GDVVLDLACGKGGDLIKW----DKAK------IGYYVGIDIAEGSIEDCRTRYNG-----DADH------HQRR------  137 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l----~~~~------~~~v~gvD~s~~~~~~a~~~~~~-----~~~~------~~~~------  137 (262)
                      .-+|+-+||++|.-.-.+    .+..      .-+++|+|+|..+++.|+...-.     .+..      .+..      
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            569999999999853322    1211      23699999999999999865422     1111      0000      


Q ss_pred             ---cCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          138 ---KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       138 ---~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                         ..+...|.|.+.|+...++     ..+.||+|+|.+++.|+  +.+.+.+++..++..|+|||+|++.
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~-----~~~~fD~IfCRNVLIYF--d~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSP-----FLGKFDLIFCRNVLIYF--DEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEChHHhcccEEeecCCCCCcc-----ccCCCCEEEEcceEEee--CHHHHHHHHHHHHHHhCCCCEEEEc
Confidence               1222457888888766552     25789999999999999  8899999999999999999999985

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.03  E-value=1.1e-09  Score=87.24  Aligned_cols=108  Identities=22%  Similarity=0.275  Sum_probs=82.1

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ....+||||||++|.-+..++..  ..++++.+|++++..+.|++.+...        ++..+++++.+|+.+.-- .+.
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a--------g~~~~I~~~~gda~~~l~-~l~  114 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA--------GLDDRIEVIEGDALEVLP-ELA  114 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT--------TGGGGEEEEES-HHHHHH-HHH
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc--------CCCCcEEEEEeccHhhHH-HHH
Confidence            46779999999999988888763  4578999999999999999988743        334579999999865311 110


Q ss_pred             --CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                        .+.++||+|++...-       ......+..+.+.|+|||.+++..
T Consensus       115 ~~~~~~~fD~VFiDa~K-------~~y~~y~~~~~~ll~~ggvii~DN  155 (205)
T PF01596_consen  115 NDGEEGQFDFVFIDADK-------RNYLEYFEKALPLLRPGGVIIADN  155 (205)
T ss_dssp             HTTTTTSEEEEEEESTG-------GGHHHHHHHHHHHEEEEEEEEEET
T ss_pred             hccCCCceeEEEEcccc-------cchhhHHHHHhhhccCCeEEEEcc
Confidence              024689999987743       345678888899999999999874

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.03  E-value=5.7e-10  Score=87.78  Aligned_cols=107  Identities=17%  Similarity=0.324  Sum_probs=90.7

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ....++|||||-|.....+.....++++-+|.|-.|++.++..-.           ....+...++|-+.+++     .+
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-----------p~i~~~~~v~DEE~Ldf-----~e  135 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-----------PSIETSYFVGDEEFLDF-----KE  135 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-----------CceEEEEEecchhcccc-----cc
Confidence            456899999999999988877788899999999999999987532           12336678899888887     78


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      +++|+|+++..+|+.    .+....+.+++..|||+|.++.++-..+
T Consensus       136 ns~DLiisSlslHW~----NdLPg~m~~ck~~lKPDg~Fiasmlggd  178 (325)
T KOG2940|consen  136 NSVDLIISSLSLHWT----NDLPGSMIQCKLALKPDGLFIASMLGGD  178 (325)
T ss_pred             cchhhhhhhhhhhhh----ccCchHHHHHHHhcCCCccchhHHhccc
Confidence            999999999999988    7888999999999999999998765444

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=99.02  E-value=2.5e-09  Score=89.08  Aligned_cols=139  Identities=17%  Similarity=0.306  Sum_probs=92.5

Q ss_pred             ccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-C
Q 024797           64 IHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-F  142 (262)
Q Consensus        64 ~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~  142 (262)
                      ...+..+.|+...      ..+.+|||+-|=+|.++...+..+..+|+.||.|+.+++.+++++.-.        ++. .
T Consensus       109 lDqR~nR~~v~~~------~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lN--------g~~~~  174 (286)
T PF10672_consen  109 LDQRENRKWVRKY------AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALN--------GLDLD  174 (286)
T ss_dssp             GGGHHHHHHHHHH------CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHT--------T-CCT
T ss_pred             HHHHhhHHHHHHH------cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--------CCCcc
Confidence            3345555555543      468899999999999999888778778999999999999999998732        222 4


Q ss_pred             CeEEEeCcccccccccccCCCCCeeEEEEccc-cc-ccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC----hHHHHHHH
Q 024797          143 PARLICGDCYEVHLDKVLADDAPFDICSCQFA-MH-YSWSTEARARRALANVSALLRPGGTFIGTMPD----ANVIIKKL  216 (262)
Q Consensus       143 ~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~-l~-~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~----~~~~~~~~  216 (262)
                      +++++++|+.+.-- ... ..++||+|++.-- +. .-+.-..+...++..+.++|+|||.|++++.+    .+.+.+.+
T Consensus       175 ~~~~~~~Dvf~~l~-~~~-~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~  252 (286)
T PF10672_consen  175 RHRFIQGDVFKFLK-RLK-KGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAV  252 (286)
T ss_dssp             CEEEEES-HHHHHH-HHH-HTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHH
T ss_pred             ceEEEecCHHHHHH-HHh-cCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHH
Confidence            68999999876421 111 3468999998531 10 00112356788999999999999999887754    34444444


Q ss_pred             hh
Q 024797          217 RE  218 (262)
Q Consensus       217 ~~  218 (262)
                      ..
T Consensus       253 ~~  254 (286)
T PF10672_consen  253 AE  254 (286)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=99.02  E-value=2.1e-09  Score=89.12  Aligned_cols=116  Identities=17%  Similarity=0.210  Sum_probs=86.9

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      +.++.......+..|||+|||+|.++.+.+..+.++|++++-|+ |.+.|++....        +++..++.++.+.+++
T Consensus       167 ~Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~--------N~~~~rItVI~GKiEd  237 (517)
T KOG1500|consen  167 RAILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVAS--------NNLADRITVIPGKIED  237 (517)
T ss_pred             HHHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhc--------CCccceEEEccCcccc
Confidence            34444444457889999999999888888788888999999876 99999998773        4567789999999999


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +.+      +++.|+|++-- +.+++.+..-.+.. -.+++.|+|.|.++-++
T Consensus       238 ieL------PEk~DviISEP-MG~mL~NERMLEsY-l~Ark~l~P~GkMfPT~  282 (517)
T KOG1500|consen  238 IEL------PEKVDVIISEP-MGYMLVNERMLESY-LHARKWLKPNGKMFPTV  282 (517)
T ss_pred             ccC------chhccEEEecc-chhhhhhHHHHHHH-HHHHhhcCCCCcccCcc
Confidence            886      57899998643 33333344434433 44569999999987654

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.01  E-value=4.6e-09  Score=83.78  Aligned_cols=107  Identities=21%  Similarity=0.226  Sum_probs=84.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe-Cccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLDK  158 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~  158 (262)
                      ..++.+|||+|.+.|.-++.++..  ..++++.+|+++++.+.|++++.+.+.        ..++..+. +|+.+.-.. 
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~--------~~~i~~~~~gdal~~l~~-  127 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGV--------DDRIELLLGGDALDVLSR-  127 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCC--------cceEEEEecCcHHHHHHh-
Confidence            457889999999999888877763  367899999999999999999986544        44577777 576543211 


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                        ...++||+|++..       ...+...++..+.+.|+|||.+++..
T Consensus       128 --~~~~~fDliFIDa-------dK~~yp~~le~~~~lLr~GGliv~DN  166 (219)
T COG4122         128 --LLDGSFDLVFIDA-------DKADYPEYLERALPLLRPGGLIVADN  166 (219)
T ss_pred             --ccCCCccEEEEeC-------ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence              1368999999766       34567889999999999999999863

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.00  E-value=5.5e-09  Score=87.34  Aligned_cols=85  Identities=14%  Similarity=0.130  Sum_probs=65.5

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +..++..+...++.+|||+|||+|.++..+++... +|+|+|++++|++.+++++.            ..+++++++|+.
T Consensus        31 ~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~------------~~~v~~i~~D~~   97 (272)
T PRK00274         31 LDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFA------------EDNLTIIEGDAL   97 (272)
T ss_pred             HHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhc------------cCceEEEEChhh
Confidence            44455555566788999999999999998887644 89999999999999988764            246999999998


Q ss_pred             ccccccccCCCCCeeEEEEcccc
Q 024797          153 EVHLDKVLADDAPFDICSCQFAM  175 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l  175 (262)
                      ++++     ++-.++.|+++...
T Consensus        98 ~~~~-----~~~~~~~vv~NlPY  115 (272)
T PRK00274         98 KVDL-----SELQPLKVVANLPY  115 (272)
T ss_pred             cCCH-----HHcCcceEEEeCCc
Confidence            8765     22115788776543

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.00  E-value=5.3e-09  Score=93.20  Aligned_cols=121  Identities=18%  Similarity=0.197  Sum_probs=81.2

Q ss_pred             HHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797           77 LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (262)
Q Consensus        77 l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (262)
                      +..+...++.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++...+         ..+++++++|+.+.. 
T Consensus       285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~---------~~nv~~~~~d~~~~l-  353 (431)
T TIGR00479       285 LEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNG---------IANVEFLAGTLETVL-  353 (431)
T ss_pred             HHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhC---------CCceEEEeCCHHHHH-
Confidence            33333456789999999999999988754 4589999999999999999876322         236999999986531 


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHH
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL  216 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~  216 (262)
                      .......++||+|++.-.-.-+      ...+++.+.+ ++|++.+++++ |+..+...+
T Consensus       354 ~~~~~~~~~~D~vi~dPPr~G~------~~~~l~~l~~-l~~~~ivyvsc-~p~tlard~  405 (431)
T TIGR00479       354 PKQPWAGQIPDVLLLDPPRKGC------AAEVLRTIIE-LKPERIVYVSC-NPATLARDL  405 (431)
T ss_pred             HHHHhcCCCCCEEEECcCCCCC------CHHHHHHHHh-cCCCEEEEEcC-CHHHHHHHH
Confidence            1111134579999976532211      2345555444 78988777764 455554443

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.98  E-value=6.1e-09  Score=92.37  Aligned_cols=103  Identities=21%  Similarity=0.251  Sum_probs=72.4

Q ss_pred             CCeEEEecCCCCcchHHHHhcC-----CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           85 GDVVLDLACGKGGDLIKWDKAK-----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      +..|||+|||+|-++...++..     ..+|++|+-++.++...+++...        .++..+|+++++|++++..   
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~--------n~w~~~V~vi~~d~r~v~l---  255 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA--------NGWGDKVTVIHGDMREVEL---  255 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH--------TTTTTTEEEEES-TTTSCH---
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh--------cCCCCeEEEEeCcccCCCC---
Confidence            5689999999998877665542     45899999999888777665442        3456779999999999886   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                         +.++|+||+=..= .+. ..+.....|..+.+.|+|||.++
T Consensus       256 ---pekvDIIVSElLG-sfg-~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  256 ---PEKVDIIVSELLG-SFG-DNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             ---SS-EEEEEE---B-TTB-TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             ---CCceeEEEEeccC-Ccc-ccccCHHHHHHHHhhcCCCCEEe
Confidence               4699999963311 111 11344567889999999999876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.98  E-value=3.6e-09  Score=87.80  Aligned_cols=87  Identities=20%  Similarity=0.210  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      .+++.++..+...++.+|||+|||+|.++..+++. ..+++|+|+++.+++.+++++..           ..+++++++|
T Consensus        16 ~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~-----------~~~v~ii~~D   83 (258)
T PRK14896         16 RVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA-----------AGNVEIIEGD   83 (258)
T ss_pred             HHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc-----------CCCEEEEEec
Confidence            34555665555667889999999999999998876 45899999999999999987752           2469999999


Q ss_pred             ccccccccccCCCCCeeEEEEccccc
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMH  176 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~  176 (262)
                      +..+++       ..||.|+++...+
T Consensus        84 ~~~~~~-------~~~d~Vv~NlPy~  102 (258)
T PRK14896         84 ALKVDL-------PEFNKVVSNLPYQ  102 (258)
T ss_pred             cccCCc-------hhceEEEEcCCcc
Confidence            988765       3479998876654

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=98.97  E-value=1e-09  Score=89.30  Aligned_cols=102  Identities=25%  Similarity=0.402  Sum_probs=83.7

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ..+..++|+|||.|..+..   .+...++|.|++...+..+++.-.               .....+|+..+|.     .
T Consensus        44 ~~gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~~~~---------------~~~~~ad~l~~p~-----~  100 (293)
T KOG1331|consen   44 PTGSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKRSGG---------------DNVCRADALKLPF-----R  100 (293)
T ss_pred             CCcceeeecccCCcccCcC---CCcceeeecchhhhhccccccCCC---------------ceeehhhhhcCCC-----C
Confidence            4588999999999976542   344579999999988888876432               2578899999887     6


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +.+||.++...++||+ .+......+++++.++|+|||...+.+..
T Consensus       101 ~~s~d~~lsiavihhl-sT~~RR~~~l~e~~r~lrpgg~~lvyvwa  145 (293)
T KOG1331|consen  101 EESFDAALSIAVIHHL-STRERRERALEELLRVLRPGGNALVYVWA  145 (293)
T ss_pred             CCccccchhhhhhhhh-hhHHHHHHHHHHHHHHhcCCCceEEEEeh
Confidence            8999999999999997 56667888999999999999998887653

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.97  E-value=5.9e-09  Score=81.22  Aligned_cols=115  Identities=20%  Similarity=0.146  Sum_probs=73.1

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+|||+|..++.++.. +...|+.+|..+ .++..+.++...+.      ....++.+...|..+.......
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~------~~~~~v~v~~L~Wg~~~~~~~~  115 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS------LLDGRVSVRPLDWGDELDSDLL  115 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------------EEEE--TTS-HHHHHH
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc------cccccccCcEEEecCccccccc
Confidence            457889999999999888877765 566899999998 99988888763211      1234577777776442111111


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                       +..+||+|++.-++..    .+....+++.+.+.|+++|.+++..+.
T Consensus       116 -~~~~~D~IlasDv~Y~----~~~~~~L~~tl~~ll~~~~~vl~~~~~  158 (173)
T PF10294_consen  116 -EPHSFDVILASDVLYD----EELFEPLVRTLKRLLKPNGKVLLAYKR  158 (173)
T ss_dssp             -S-SSBSEEEEES--S-----GGGHHHHHHHHHHHBTT-TTEEEEEE-
T ss_pred             -ccccCCEEEEecccch----HHHHHHHHHHHHHHhCCCCEEEEEeCE
Confidence             4568999999998874    367888999999999999998777653

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.97  E-value=7.4e-09  Score=81.77  Aligned_cols=111  Identities=8%  Similarity=-0.096  Sum_probs=77.6

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ++.+|||++||+|.++..++..+...|+++|.++.+++.+++++...        +...+++++++|+...-. ......
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~--------~~~~~~~~~~~D~~~~l~-~~~~~~  119 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALL--------KSGEQAEVVRNSALRALK-FLAKKP  119 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh--------CCcccEEEEehhHHHHHH-HhhccC
Confidence            57899999999999999998777778999999999999999987632        223458899999855311 111012


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHH--HhccCCCcEEEEEeCC
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANV--SALLRPGGTFIGTMPD  208 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~--~~~L~~gG~li~~~~~  208 (262)
                      ..||+|+..--+..     .....++..+  ..+|+++|.+++..+.
T Consensus       120 ~~~dvv~~DPPy~~-----~~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       120 TFDNVIYLDPPFFN-----GALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             CCceEEEECcCCCC-----CcHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            34788887654432     1123334433  3478999999987654

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=98.95  E-value=9.2e-09  Score=77.17  Aligned_cols=119  Identities=16%  Similarity=0.155  Sum_probs=95.2

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      +++...+....+..|||+|.|+|-++..+++.  ....++.++.|++.+....+....              +.++.+|+
T Consensus        38 ~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~--------------~~ii~gda  103 (194)
T COG3963          38 RKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG--------------VNIINGDA  103 (194)
T ss_pred             HHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCC--------------ccccccch
Confidence            44555667778889999999999999999875  344699999999999999998762              66899998


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .++.-.-.......||.|++..-+-.+  +.....++++.+...|.+||.++--...
T Consensus       104 ~~l~~~l~e~~gq~~D~viS~lPll~~--P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         104 FDLRTTLGEHKGQFFDSVISGLPLLNF--PMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             hhHHHHHhhcCCCeeeeEEeccccccC--cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            877621122256789999998877666  6777889999999999999998865544

>PLN02672 methionine S-methyltransferase

Probab=98.95  E-value=7.1e-09  Score=99.75  Aligned_cols=121  Identities=17%  Similarity=0.149  Sum_probs=84.1

Q ss_pred             CCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCcccc-------ccccCCCCCeEEEeCccccccc
Q 024797           85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHH-------QRRKKFSFPARLICGDCYEVHL  156 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-------~~~~~~~~~v~~~~~d~~~~~~  156 (262)
                      +.+|||+|||+|..+..++.. +..+++|+|+|+.+++.|++++...+...       ...+....+++++++|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            468999999999999988764 44689999999999999999886422110       0001223469999999876431


Q ss_pred             ccccCCCCCeeEEEEcccc--------------c-------c-----c--------CCCHHHHHHHHHHHHhccCCCcEE
Q 024797          157 DKVLADDAPFDICSCQFAM--------------H-------Y-----S--------WSTEARARRALANVSALLRPGGTF  202 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l--------------~-------~-----~--------~~~~~~~~~~l~~~~~~L~~gG~l  202 (262)
                      .    ...+||+|+++--.              .       |     .        -+.....++++.++.++|+|||.+
T Consensus       199 ~----~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l  274 (1082)
T PLN02672        199 D----NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIM  274 (1082)
T ss_pred             c----cCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEE
Confidence            0    12369999986421              0       0     0        112233478889999999999999


Q ss_pred             EEEeCCh
Q 024797          203 IGTMPDA  209 (262)
Q Consensus       203 i~~~~~~  209 (262)
                      ++.+...
T Consensus       275 ~lEiG~~  281 (1082)
T PLN02672        275 IFNMGGR  281 (1082)
T ss_pred             EEEECcc
Confidence            9998643

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.94  E-value=3.5e-08  Score=80.90  Aligned_cols=112  Identities=21%  Similarity=0.173  Sum_probs=88.3

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-C--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-K--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .+-+||||+||.|+.....+.. +  ...+...|.|+..++..++.+.+.+.        ..-++|.++|+++...... 
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL--------~~i~~f~~~dAfd~~~l~~-  205 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGL--------EDIARFEQGDAFDRDSLAA-  205 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCC--------ccceEEEecCCCCHhHhhc-
Confidence            5669999999999998887663 2  35799999999999999999886443        4446999999987532111 


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                       -+...|++++++.++.+ ++.+.....+..+.+.+.|||++|.+.
T Consensus       206 -l~p~P~l~iVsGL~ElF-~Dn~lv~~sl~gl~~al~pgG~lIyTg  249 (311)
T PF12147_consen  206 -LDPAPTLAIVSGLYELF-PDNDLVRRSLAGLARALEPGGYLIYTG  249 (311)
T ss_pred             -cCCCCCEEEEecchhhC-CcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence             24557999999988876 444557778999999999999999986

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.94  E-value=3.9e-09  Score=84.59  Aligned_cols=86  Identities=19%  Similarity=0.310  Sum_probs=68.9

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .....|-|+|||.+.++.    .....|+.+|+-+                        .+-.++.+|+.+.|+     +
T Consensus       179 ~~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a------------------------~~~~V~~cDm~~vPl-----~  225 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS----SERHKVHSFDLVA------------------------VNERVIACDMRNVPL-----E  225 (325)
T ss_pred             cCceEEEecccchhhhhh----ccccceeeeeeec------------------------CCCceeeccccCCcC-----c
Confidence            345689999999987554    3444699999843                        124578999999998     7


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +++.|++++..++.-     .++..++.++.|+|++||.++|.-
T Consensus       226 d~svDvaV~CLSLMg-----tn~~df~kEa~RiLk~gG~l~IAE  264 (325)
T KOG3045|consen  226 DESVDVAVFCLSLMG-----TNLADFIKEANRILKPGGLLYIAE  264 (325)
T ss_pred             cCcccEEEeeHhhhc-----ccHHHHHHHHHHHhccCceEEEEe
Confidence            999999998877753     578899999999999999998864

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.90  E-value=1.7e-08  Score=82.64  Aligned_cols=107  Identities=14%  Similarity=0.117  Sum_probs=82.7

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .+..+|||+|++.|.-+..++..  ..++++.+|.+++..+.|++.+...        ++..+++++.+|+.+.- ..+.
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a--------g~~~~I~~~~G~a~e~L-~~l~  148 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA--------GVAHKIDFREGPALPVL-DQMI  148 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC--------CCCCceEEEeccHHHHH-HHHH
Confidence            46779999999999888877653  4568999999999999999998843        34567999999986531 1111


Q ss_pred             C---CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          161 A---DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       161 ~---~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .   ..++||+|++...       .......+..+.+.|+|||.+++.
T Consensus       149 ~~~~~~~~fD~iFiDad-------K~~Y~~y~~~~l~ll~~GGviv~D  189 (247)
T PLN02589        149 EDGKYHGTFDFIFVDAD-------KDNYINYHKRLIDLVKVGGVIGYD  189 (247)
T ss_pred             hccccCCcccEEEecCC-------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence            0   1368999998763       355677888899999999999875

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.89  E-value=8.3e-09  Score=86.83  Aligned_cols=89  Identities=17%  Similarity=0.329  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      ++..++......++.+|||||||+|.++..++.. ..+++++|+++.+++.+++++...        +...+++++++|+
T Consensus        24 i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~--------~~~~~v~ii~~Da   94 (294)
T PTZ00338         24 VLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNS--------PLASKLEVIEGDA   94 (294)
T ss_pred             HHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhc--------CCCCcEEEEECCH
Confidence            4555666666678899999999999999988764 357999999999999999887521        1234699999999


Q ss_pred             cccccccccCCCCCeeEEEEccccc
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMH  176 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~  176 (262)
                      ...++       ..||+|+++...+
T Consensus        95 l~~~~-------~~~d~VvaNlPY~  112 (294)
T PTZ00338         95 LKTEF-------PYFDVCVANVPYQ  112 (294)
T ss_pred             hhhcc-------cccCEEEecCCcc
Confidence            87654       3689998766544

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.87  E-value=1.9e-08  Score=78.93  Aligned_cols=114  Identities=19%  Similarity=0.144  Sum_probs=80.1

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      -++.++||+.||+|.++.+.+..+..+|+.||.++.++...++++...+.        ..++.++++|+...-.. ....
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~--------~~~~~v~~~d~~~~l~~-~~~~  111 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGL--------EDKIRVIKGDAFKFLLK-LAKK  111 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT---------GGGEEEEESSHHHHHHH-HHHC
T ss_pred             cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCC--------CcceeeeccCHHHHHHh-hccc
Confidence            37899999999999999998888888999999999999999999874332        33578889986543211 1013


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHH--hccCCCcEEEEEeCCh
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPDA  209 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~--~~L~~gG~li~~~~~~  209 (262)
                      ..+||+|++.--...-    .....++..+.  .+|+++|.+++.....
T Consensus       112 ~~~fDiIflDPPY~~~----~~~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  112 GEKFDIIFLDPPYAKG----LYYEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             TS-EEEEEE--STTSC----HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             CCCceEEEECCCcccc----hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            6789999988755432    11466777776  7999999999987654

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PLN02823 spermine synthase

Probab=98.87  E-value=7.7e-08  Score=82.32  Aligned_cols=115  Identities=18%  Similarity=0.198  Sum_probs=81.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..+.+||.+|+|.|..+..+++. ...+++.+|+++++++.|++.+.....     .-...+++++.+|+..+-..    
T Consensus       102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~-----~~~dprv~v~~~Da~~~L~~----  172 (336)
T PLN02823        102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNRE-----AFCDKRLELIINDARAELEK----  172 (336)
T ss_pred             CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccc-----cccCCceEEEEChhHHHHhh----
Confidence            35679999999999888888774 456799999999999999998753110     01146799999998775321    


Q ss_pred             CCCCeeEEEEcccccccCCCH--HHHHHHHH-HHHhccCCCcEEEEEe
Q 024797          162 DDAPFDICSCQFAMHYSWSTE--ARARRALA-NVSALLRPGGTFIGTM  206 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~--~~~~~~l~-~~~~~L~~gG~li~~~  206 (262)
                      ..++||+|++...-...-.+.  -.-..+++ .+.+.|+|||++++..
T Consensus       173 ~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~  220 (336)
T PLN02823        173 RDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA  220 (336)
T ss_pred             CCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence            357899999874211000000  01246777 8999999999998764

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.83  E-value=3.4e-07  Score=77.72  Aligned_cols=124  Identities=15%  Similarity=0.157  Sum_probs=84.4

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-----CCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-CCeEEEeCccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHL  156 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~  156 (262)
                      .++..|+|+|||+|+-+..++..     ....++++|+|.++++.+.+++...        ..+ ..+.-+++|..+...
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~--------~~p~l~v~~l~gdy~~~l~  146 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLG--------NFSHVRCAGLLGTYDDGLA  146 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhc--------cCCCeEEEEEEecHHHHHh
Confidence            46678999999999987766552     2346999999999999999887611        111 234458888755311


Q ss_pred             --ccccCCCCCeeEEEEcc-cccccCCCHHHHHHHHHHHHh-ccCCCcEEEEEeC---ChHHHHHHHh
Q 024797          157 --DKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSA-LLRPGGTFIGTMP---DANVIIKKLR  217 (262)
Q Consensus       157 --~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~-~L~~gG~li~~~~---~~~~~~~~~~  217 (262)
                        .... ......+|+..+ ++.++  ++.....+|+++++ .|+|||.|++.+.   +.+.+...+.
T Consensus       147 ~l~~~~-~~~~~r~~~flGSsiGNf--~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~l~~AY~  211 (319)
T TIGR03439       147 WLKRPE-NRSRPTTILWLGSSIGNF--SRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPDKVLRAYN  211 (319)
T ss_pred             hccccc-ccCCccEEEEeCccccCC--CHHHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHhc
Confidence              0000 123356666655 77777  77888999999999 9999999999763   3444444443

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.82  E-value=2.7e-08  Score=89.96  Aligned_cols=122  Identities=11%  Similarity=0.118  Sum_probs=89.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..+..+||||||.|.++..++.. +...++|+|++...+..+.++....+.         .|+.+++.|+..+..  . +
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l---------~N~~~~~~~~~~~~~--~-~  413 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI---------TNFLLFPNNLDLILN--D-L  413 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC---------CeEEEEcCCHHHHHH--h-c
Confidence            35678999999999999999874 555799999999999888877654332         357788887653321  1 2


Q ss_pred             CCCCeeEEEEcccccccCC----CHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHH
Q 024797          162 DDAPFDICSCQFAMHYSWS----TEARARRALANVSALLRPGGTFIGTMPDANVIIKKL  216 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~----~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~  216 (262)
                      +++++|.|++++.--|...    -.--...++..++++|+|||.+.+.+.+.++....+
T Consensus       414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~  472 (506)
T PRK01544        414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAI  472 (506)
T ss_pred             CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH
Confidence            6788999998875433200    001126789999999999999999998887665543

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.82  E-value=5.8e-08  Score=80.39  Aligned_cols=86  Identities=22%  Similarity=0.189  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      .++..++..+...++.+|||+|||+|.++..+++.. ..++++|+++.+++.+++++..           ..+++++++|
T Consensus        16 ~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~-~~v~~iE~d~~~~~~l~~~~~~-----------~~~v~v~~~D   83 (253)
T TIGR00755        16 SVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRA-KKVTAIEIDPRLAEILRKLLSL-----------YERLEVIEGD   83 (253)
T ss_pred             HHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC-CcEEEEECCHHHHHHHHHHhCc-----------CCcEEEEECc
Confidence            345556666666678899999999999999887654 4699999999999999887641           3458999999


Q ss_pred             ccccccccccCCCCCee---EEEEcccc
Q 024797          151 CYEVHLDKVLADDAPFD---ICSCQFAM  175 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD---~V~~~~~l  175 (262)
                      +...++     +  .+|   +|+++..+
T Consensus        84 ~~~~~~-----~--~~d~~~~vvsNlPy  104 (253)
T TIGR00755        84 ALKVDL-----P--DFPKQLKVVSNLPY  104 (253)
T ss_pred             hhcCCh-----h--HcCCcceEEEcCCh
Confidence            988765     2  355   67665543

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=3.1e-08  Score=77.16  Aligned_cols=116  Identities=21%  Similarity=0.272  Sum_probs=81.9

Q ss_pred             HHHHHh--ccCCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCC-CCCeEEEeC
Q 024797           76 VLVQLY--ARRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICG  149 (262)
Q Consensus        76 ~l~~~~--~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~  149 (262)
                      ++..+.  ..|+.+.||+|+|+|.++.-++.   ......+|||.-++.++.+++++...-........+ ..++.++.+
T Consensus        72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG  151 (237)
T KOG1661|consen   72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG  151 (237)
T ss_pred             HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence            344444  57999999999999998876653   233345999999999999999886432100001111 245788899


Q ss_pred             cccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       150 d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      |......     +..+||.|.+..+..          +..+++...|++||.+++-.
T Consensus       152 Dgr~g~~-----e~a~YDaIhvGAaa~----------~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  152 DGRKGYA-----EQAPYDAIHVGAAAS----------ELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             CccccCC-----ccCCcceEEEccCcc----------ccHHHHHHhhccCCeEEEee
Confidence            9877654     678999999876543          34466778899999998854

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.81  E-value=3.7e-08  Score=79.65  Aligned_cols=96  Identities=18%  Similarity=0.184  Sum_probs=60.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeE-EEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR-LICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+++.|+....+.-              .++. +...|+......+...
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~--------------~~v~~~~~~ni~~~~~~~~~~  139 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQD--------------ERVKVLERTNIRYVTPADIFP  139 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcC--------------CCeeEeecCCcccCCHhHcCC
Confidence            367799999999999999998877778999999998887622211              1122 3333444322211110


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .-..+|+++++..            .++..+.+.|++ |.+++-
T Consensus       140 d~~~~DvsfiS~~------------~~l~~i~~~l~~-~~~~~L  170 (228)
T TIGR00478       140 DFATFDVSFISLI------------SILPELDLLLNP-NDLTLL  170 (228)
T ss_pred             CceeeeEEEeehH------------hHHHHHHHHhCc-CeEEEE
Confidence            1235665554332            246788899999 776654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.81  E-value=6.3e-08  Score=82.13  Aligned_cols=85  Identities=18%  Similarity=0.214  Sum_probs=57.8

Q ss_pred             CCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe-CcccccccccccC
Q 024797           84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLDKVLA  161 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~~  161 (262)
                      ++.+|||||||+|.....++. ....+++|+|+++.+++.|++++...       .++..++.+.+ .|...+. .....
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N-------p~l~~~I~~~~~~~~~~i~-~~i~~  185 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN-------PGLNGAIRLRLQKDSKAIF-KGIIH  185 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-------cCCcCcEEEEEccchhhhh-hcccc
Confidence            457999999999976666554 33457999999999999999988731       02445677654 3332221 11111


Q ss_pred             CCCCeeEEEEccccc
Q 024797          162 DDAPFDICSCQFAMH  176 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~  176 (262)
                      +.+.||+|+|+--++
T Consensus       186 ~~~~fDlivcNPPf~  200 (321)
T PRK11727        186 KNERFDATLCNPPFH  200 (321)
T ss_pred             cCCceEEEEeCCCCc
Confidence            457899999997665

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.80  E-value=7.9e-08  Score=85.71  Aligned_cols=115  Identities=17%  Similarity=0.174  Sum_probs=84.6

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      .+.++.+|||++||+|.-+..++..  ..+.+++.|+++.-++..++++...+..         ++.+.+.|...+... 
T Consensus       110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~---------nv~v~~~D~~~~~~~-  179 (470)
T PRK11933        110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS---------NVALTHFDGRVFGAA-  179 (470)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC---------eEEEEeCchhhhhhh-
Confidence            4578899999999999998888763  4568999999999999999998855433         378888887765321 


Q ss_pred             ccCCCCCeeEEEEccc------cccc------CC------CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          159 VLADDAPFDICSCQFA------MHYS------WS------TEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~------l~~~------~~------~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                         ..+.||.|++..-      +..-      |.      -...+.++|..+.+.|||||+|+-++..
T Consensus       180 ---~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT  244 (470)
T PRK11933        180 ---LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT  244 (470)
T ss_pred             ---chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence               2467999995431      1110      00      0123478899999999999999888764

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.80  E-value=5e-08  Score=77.27  Aligned_cols=100  Identities=23%  Similarity=0.301  Sum_probs=70.9

Q ss_pred             ccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+.||-|.++..+++ .....|+++|+++.+++..++++..        +++...+..+++|+..+.     
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~l--------Nkv~~~i~~~~~D~~~~~-----  165 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRL--------NKVENRIEVINGDAREFL-----  165 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHH--------TT-TTTEEEEES-GGG-------
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHH--------cCCCCeEEEEcCCHHHhc-----
Confidence            46789999999999999999987 3555799999999999999998873        345567899999998875     


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                       +.+.+|-|+++..-.        ...+|..+.+.+++||++-
T Consensus       166 -~~~~~drvim~lp~~--------~~~fl~~~~~~~~~~g~ih  199 (200)
T PF02475_consen  166 -PEGKFDRVIMNLPES--------SLEFLDAALSLLKEGGIIH  199 (200)
T ss_dssp             --TT-EEEEEE--TSS--------GGGGHHHHHHHEEEEEEEE
T ss_pred             -CccccCEEEECChHH--------HHHHHHHHHHHhcCCcEEE
Confidence             368899998865322        2357788999999999864

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.79  E-value=6.1e-09  Score=76.22  Aligned_cols=78  Identities=23%  Similarity=0.312  Sum_probs=63.4

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      -.|.+++|+|||.|.+.....-.....|+|+|+++++++.++++..+          ...++.++++|+.++.+     .
T Consensus        47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeE----------fEvqidlLqcdildle~-----~  111 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEE----------FEVQIDLLQCDILDLEL-----K  111 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHH----------hhhhhheeeeeccchhc-----c
Confidence            37889999999999887555445666899999999999999998774          24557899999988766     5


Q ss_pred             CCCeeEEEEcccc
Q 024797          163 DAPFDICSCQFAM  175 (262)
Q Consensus       163 ~~~fD~V~~~~~l  175 (262)
                      .+.||.++.+--+
T Consensus       112 ~g~fDtaviNppF  124 (185)
T KOG3420|consen  112 GGIFDTAVINPPF  124 (185)
T ss_pred             CCeEeeEEecCCC
Confidence            6889999987644

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.76  E-value=1e-07  Score=79.37  Aligned_cols=114  Identities=18%  Similarity=0.141  Sum_probs=84.7

Q ss_pred             CeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           86 DVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      .+||-||.|.|..+..+++.. ..+++.||+++..++.|++.+......     ....+++++..|..++--.    ...
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~-----~~dpRv~i~i~Dg~~~v~~----~~~  148 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGG-----ADDPRVEIIIDDGVEFLRD----CEE  148 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccc-----cCCCceEEEeccHHHHHHh----CCC
Confidence            699999999999999998854 668999999999999999998743211     1147799999998765321    234


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +||+|++...-.--....-.-..+++.+++.|+++|+++....+
T Consensus       149 ~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~  192 (282)
T COG0421         149 KFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQAGS  192 (282)
T ss_pred             cCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEecCC
Confidence            89999987643200000011367999999999999999987544

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.75  E-value=7.2e-08  Score=82.32  Aligned_cols=136  Identities=21%  Similarity=0.314  Sum_probs=82.1

Q ss_pred             CccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHh--------cCCCeEEEEeCChhHHHHHHHHhccCcc
Q 024797           61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK--------AKIGYYVGIDIAEGSIEDCRTRYNGDAD  132 (262)
Q Consensus        61 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~--------~~~~~v~gvD~s~~~~~~a~~~~~~~~~  132 (262)
                      +..+.+..+...+..++   ...++.+|||.+||+|.++..+..        .....++|+|+++.++..|+.++.-.+.
T Consensus        26 G~~~TP~~i~~l~~~~~---~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~  102 (311)
T PF02384_consen   26 GQFYTPREIVDLMVKLL---NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGI  102 (311)
T ss_dssp             GGC---HHHHHHHHHHH---TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTH
T ss_pred             ceeehHHHHHHHHHhhh---hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcc
Confidence            34455666655544443   556677899999999999887765        2455799999999999999876542211


Q ss_pred             ccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEccccccc-C----------------CCHHHHHHHHHHHHhc
Q 024797          133 HHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS-W----------------STEARARRALANVSAL  195 (262)
Q Consensus       133 ~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~-~----------------~~~~~~~~~l~~~~~~  195 (262)
                      .       .....+.++|....+...   ....||+|+++--+... +                .....-..++..+.+.
T Consensus       103 ~-------~~~~~i~~~d~l~~~~~~---~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~  172 (311)
T PF02384_consen  103 D-------NSNINIIQGDSLENDKFI---KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSL  172 (311)
T ss_dssp             H-------CBGCEEEES-TTTSHSCT---ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHT
T ss_pred             c-------cccccccccccccccccc---cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhh
Confidence            1       112347788865544310   14689999987533211 0                0111223588999999


Q ss_pred             cCCCcEEEEEeCCh
Q 024797          196 LRPGGTFIGTMPDA  209 (262)
Q Consensus       196 L~~gG~li~~~~~~  209 (262)
                      |++||++++.+|+.
T Consensus       173 Lk~~G~~~~Ilp~~  186 (311)
T PF02384_consen  173 LKPGGRAAIILPNG  186 (311)
T ss_dssp             EEEEEEEEEEEEHH
T ss_pred             cccccceeEEecch
Confidence            99999998888754

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.75  E-value=6.3e-08  Score=84.43  Aligned_cols=106  Identities=15%  Similarity=0.157  Sum_probs=79.8

Q ss_pred             CCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      +.+|||++||+|..+..++.. +...|+++|+++.+++.+++++...+         ..++.+.++|+..+..     ..
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~---------~~~~~v~~~Da~~~l~-----~~  123 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNG---------LENEKVFNKDANALLH-----EE  123 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhC---------CCceEEEhhhHHHHHh-----hc
Confidence            468999999999999988753 44589999999999999999886322         1236788999866421     14


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      +.||+|++.-.        .....++..+.+.+++||.++++..|...+
T Consensus       124 ~~fD~V~lDP~--------Gs~~~~l~~al~~~~~~gilyvSAtD~~~L  164 (382)
T PRK04338        124 RKFDVVDIDPF--------GSPAPFLDSAIRSVKRGGLLCVTATDTAPL  164 (382)
T ss_pred             CCCCEEEECCC--------CCcHHHHHHHHHHhcCCCEEEEEecCchhh
Confidence            57999998641        113457777778889999999997766555

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=7.6e-07  Score=67.94  Aligned_cols=111  Identities=16%  Similarity=0.214  Sum_probs=78.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .....+||||||+|-.+.++++.  +...+.++|+++.+++...+.+.-          ...++..++.|+..--     
T Consensus        42 ~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~----------n~~~~~~V~tdl~~~l-----  106 (209)
T KOG3191|consen   42 HNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARC----------NRVHIDVVRTDLLSGL-----  106 (209)
T ss_pred             cCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHh----------cCCccceeehhHHhhh-----
Confidence            34778999999999988888763  444688999999999998876652          1334678888876543     


Q ss_pred             CCCCCeeEEEEccccc---------------cc--CCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          161 ADDAPFDICSCQFAMH---------------YS--WSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~---------------~~--~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                       ..+++|+++.+-...               +.  .+..+-..+++..+-.+|.|.|.+++.....
T Consensus       107 -~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~  171 (209)
T KOG3191|consen  107 -RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA  171 (209)
T ss_pred             -ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh
Confidence             248889888654211               00  1123335677788888999999998776543

>PRK04148 hypothetical protein; Provisional

Probab=98.69  E-value=3.4e-07  Score=67.36  Aligned_cols=94  Identities=12%  Similarity=0.034  Sum_probs=65.8

Q ss_pred             cCCCeEEEecCCCCc-chHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||.|. ++..+.+. ...|+++|+++..++.+++..                +.++++|+++..+.    
T Consensus        15 ~~~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~~----------------~~~v~dDlf~p~~~----   73 (134)
T PRK04148         15 GKNKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKLG----------------LNAFVDDLFNPNLE----   73 (134)
T ss_pred             ccCCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHhC----------------CeEEECcCCCCCHH----
Confidence            356789999999996 55555543 348999999999999887753                67899999876541    


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      --..+|+|++..       ++.+.+..+.++.+.+  |.-+++..
T Consensus        74 ~y~~a~liysir-------pp~el~~~~~~la~~~--~~~~~i~~  109 (134)
T PRK04148         74 IYKNAKLIYSIR-------PPRDLQPFILELAKKI--NVPLIIKP  109 (134)
T ss_pred             HHhcCCEEEEeC-------CCHHHHHHHHHHHHHc--CCCEEEEc
Confidence            135789998654       4455566666666554  34466543

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.69  E-value=8.4e-08  Score=78.60  Aligned_cols=122  Identities=20%  Similarity=0.246  Sum_probs=78.8

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccc----------ccc---------ccCCCCCe
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH----------HQR---------RKKFSFPA  144 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~----------~~~---------~~~~~~~v  144 (262)
                      ++.++||||||+-.+-..-+......++..|.++..++..++.+...+.-          ..+         ...+...|
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V  135 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV  135 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence            56789999999954433223345667999999999999888777543110          000         00111224


Q ss_pred             E-EEeCcccccccccc-cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          145 R-LICGDCYEVHLDKV-LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       145 ~-~~~~d~~~~~~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      + ++.+|+.+.+.... ..-+.+||+|++.++++.+..+.+....+++++.++|||||.|++.
T Consensus       136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~  198 (256)
T PF01234_consen  136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILA  198 (256)
T ss_dssp             EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            3 77788866442111 0012359999999999999999999999999999999999999875

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.68  E-value=6.5e-08  Score=81.03  Aligned_cols=87  Identities=17%  Similarity=0.179  Sum_probs=67.5

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      ++.++..+.+.++..+||++||.|.++..+++..  .++|+|+|.++.|++.|++++.+           ..++.++++|
T Consensus         8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-----------~~ri~~i~~~   76 (296)
T PRK00050          8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-----------FGRFTLVHGN   76 (296)
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-----------CCcEEEEeCC
Confidence            3445666666788899999999999999998753  47899999999999999988752           3468999999


Q ss_pred             ccccccccccCCC--CCeeEEEEcc
Q 024797          151 CYEVHLDKVLADD--APFDICSCQF  173 (262)
Q Consensus       151 ~~~~~~~~~~~~~--~~fD~V~~~~  173 (262)
                      +.++...  . +.  .++|.|++..
T Consensus        77 f~~l~~~--l-~~~~~~vDgIl~DL   98 (296)
T PRK00050         77 FSNLKEV--L-AEGLGKVDGILLDL   98 (296)
T ss_pred             HHHHHHH--H-HcCCCccCEEEECC
Confidence            8876421  1 11  2799999865

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=98.68  E-value=1.4e-07  Score=74.39  Aligned_cols=115  Identities=17%  Similarity=0.217  Sum_probs=82.0

Q ss_pred             chhHHHHHHHHHHHHhcc-CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCe
Q 024797           66 LKKLNNWIKSVLVQLYAR-RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA  144 (262)
Q Consensus        66 ~~~~~~~~~~~l~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v  144 (262)
                      -+.+.+|++......... ...++|||||=+......-  ...-.|+.||+++.                        .-
T Consensus        32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~------------------------~~   85 (219)
T PF11968_consen   32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ------------------------HP   85 (219)
T ss_pred             hHHHHHHhhhhccccccccccceEEeecccCCCCcccc--cCceeeEEeecCCC------------------------CC
Confidence            356667776665433221 2369999999765433321  22224999999761                        13


Q ss_pred             EEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcE-----EEEEeCCh
Q 024797          145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT-----FIGTMPDA  209 (262)
Q Consensus       145 ~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~-----li~~~~~~  209 (262)
                      .+.++|+.+.|++..  +.++||+|+++.++.++ +++..+-+.+.++++.|+|+|.     |++..|.+
T Consensus        86 ~I~qqDFm~rplp~~--~~e~FdvIs~SLVLNfV-P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~  152 (219)
T PF11968_consen   86 GILQQDFMERPLPKN--ESEKFDVISLSLVLNFV-PDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP  152 (219)
T ss_pred             CceeeccccCCCCCC--cccceeEEEEEEEEeeC-CCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence            357888887766321  46799999999999987 6788899999999999999999     88888754

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.66  E-value=1.1e-07  Score=78.30  Aligned_cols=117  Identities=15%  Similarity=0.146  Sum_probs=81.4

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .+.+.+||-||.|.|..+..+++.. ..+++.||+++.+++.|++.+......     ....+++++.+|+..+-..   
T Consensus        74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~-----~~d~r~~i~~~Dg~~~l~~---  145 (246)
T PF01564_consen   74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEG-----LDDPRVRIIIGDGRKFLKE---  145 (246)
T ss_dssp             SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTT-----GGSTTEEEEESTHHHHHHT---
T ss_pred             CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccc-----cCCCceEEEEhhhHHHHHh---
Confidence            4568899999999999999887755 568999999999999999987631110     1246799999998765321   


Q ss_pred             CCCC-CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          161 ADDA-PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       161 ~~~~-~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                       ..+ +||+|++...-.......-.-..+++.+.+.|+|||.+++...
T Consensus       146 -~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~  192 (246)
T PF01564_consen  146 -TQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAG  192 (246)
T ss_dssp             -SSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -ccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEcc
Confidence             234 8999998653311100001136789999999999999998753

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=98.66  E-value=2e-06  Score=70.92  Aligned_cols=113  Identities=19%  Similarity=0.167  Sum_probs=78.1

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccc-------------cc---------------
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH-------------HQ---------------  135 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-------------~~---------------  135 (262)
                      ...+||-.|||.|+++..++..+. .+.|.|.|--|+-..+-.+......             |.               
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv  134 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV  134 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence            356899999999999999987765 7999999999977665543310000             00               


Q ss_pred             ---cccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          136 ---RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       136 ---~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                         .......+.....||+.+.-..+.  ..+.||+|+..+.+.    +.++....++.+.++|||||..|
T Consensus       135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~--~~~~~d~VvT~FFID----TA~Ni~~Yi~tI~~lLkpgG~WI  199 (270)
T PF07942_consen  135 DPSSELPSPSNLSMCAGDFLEVYGPDE--NKGSFDVVVTCFFID----TAENIIEYIETIEHLLKPGGYWI  199 (270)
T ss_pred             CcccccCCCCceeEecCccEEecCCcc--cCCcccEEEEEEEee----chHHHHHHHHHHHHHhccCCEEE
Confidence               001122345666677666543100  137999999886554    66899999999999999999654

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.66  E-value=6.4e-08  Score=76.03  Aligned_cols=105  Identities=26%  Similarity=0.262  Sum_probs=65.1

Q ss_pred             CCCeEEEecCCCCcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc----
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD----  157 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~----  157 (262)
                      ++.+|||+||++|.++..++...  ...|+|+|+.+.        ..            ...+.++++|+.+....    
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~--------~~------------~~~~~~i~~d~~~~~~~~~i~   82 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM--------DP------------LQNVSFIQGDITNPENIKDIR   82 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST--------GS-------------TTEEBTTGGGEEEEHSHHGG
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc--------cc------------ccceeeeecccchhhHHHhhh
Confidence            45899999999999999988765  568999999885        00            12366677776543211    


Q ss_pred             cccC-CCCCeeEEEEccccccc----CC---CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          158 KVLA-DDAPFDICSCQFAMHYS----WS---TEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       158 ~~~~-~~~~fD~V~~~~~l~~~----~~---~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .... ....+|+|++..+....    .+   ........+.-+.+.|+|||.+++.+..
T Consensus        83 ~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~  141 (181)
T PF01728_consen   83 KLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK  141 (181)
T ss_dssp             GSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred             hhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence            1110 12689999998832211    00   1133445566667889999999987743

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.65  E-value=3.5e-07  Score=71.61  Aligned_cols=97  Identities=18%  Similarity=0.154  Sum_probs=75.1

Q ss_pred             eEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCC
Q 024797           87 VVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP  165 (262)
Q Consensus        87 ~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  165 (262)
                      +++|+|+|.|--+..++- .+..+++.+|.+..-+...+....+++..         |++++++.+++ ..     ...+
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~---------nv~v~~~R~E~-~~-----~~~~  115 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS---------NVEVINGRAEE-PE-----YRES  115 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S---------SEEEEES-HHH-TT-----TTT-
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC---------CEEEEEeeecc-cc-----cCCC
Confidence            899999999988887764 45668999999999888887776655443         49999999988 22     4689


Q ss_pred             eeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       166 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ||+|++..+-.        ...++.-+...+++||.+++.-
T Consensus       116 fd~v~aRAv~~--------l~~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  116 FDVVTARAVAP--------LDKLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             EEEEEEESSSS--------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ccEEEeehhcC--------HHHHHHHHHHhcCCCCEEEEEc
Confidence            99999887653        4577888999999999987754

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.65  E-value=4.7e-07  Score=70.21  Aligned_cols=114  Identities=18%  Similarity=0.158  Sum_probs=83.7

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      -.+.++||+-+|+|.++.+.+..+...++.||.+..++...+++....        +...++.++.+|+... +.... .
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l--------~~~~~~~~~~~da~~~-L~~~~-~  111 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKAL--------GLEGEARVLRNDALRA-LKQLG-T  111 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh--------CCccceEEEeecHHHH-HHhcC-C
Confidence            468899999999999999998888889999999999999999998743        3346688899998733 11110 2


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHH--HHhccCCCcEEEEEeCCh
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALAN--VSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~--~~~~L~~gG~li~~~~~~  209 (262)
                      .+.||+|++.--++.   ..-+....+..  -..+|+|+|.+++.....
T Consensus       112 ~~~FDlVflDPPy~~---~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         112 REPFDLVFLDPPYAK---GLLDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             CCcccEEEeCCCCcc---chhhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            235999998876652   11222233333  568899999999987654

>PRK00536 speE spermidine synthase; Provisional

Probab=98.64  E-value=4.6e-07  Score=74.67  Aligned_cols=104  Identities=13%  Similarity=0.018  Sum_probs=76.8

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..+.+.+||=+|.|.|..+.++++++. +|+.||+++++++.+++.++....     .--..+++++.. +.+  .    
T Consensus        69 ~h~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~-----~~~DpRv~l~~~-~~~--~----  135 (262)
T PRK00536         69 TKKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHE-----VKNNKNFTHAKQ-LLD--L----  135 (262)
T ss_pred             hCCCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHH-----hhcCCCEEEeeh-hhh--c----
Confidence            345678999999999999999998764 999999999999999997764221     011345665541 111  0    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                       ..++||+|++....         ...+.+.+++.|+|||.++.-..
T Consensus       136 -~~~~fDVIIvDs~~---------~~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        136 -DIKKYDLIICLQEP---------DIHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             -cCCcCCEEEEcCCC---------ChHHHHHHHHhcCCCcEEEECCC
Confidence             24789999987532         24677889999999999998543

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.63  E-value=2.2e-07  Score=73.96  Aligned_cols=126  Identities=21%  Similarity=0.206  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      .+..++..+...+++..+|+|||.|......+. .+..+.+||++.+...+.|.............-......+.+..+|
T Consensus        30 ~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gd  109 (205)
T PF08123_consen   30 FVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGD  109 (205)
T ss_dssp             HHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccC
Confidence            355566666778899999999999998776543 5676799999999988887754432110000000113457888999


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      +.+.+.....  -...|+|++++...    + ++....|.+....||+|-++|-
T Consensus       110 fl~~~~~~~~--~s~AdvVf~Nn~~F----~-~~l~~~L~~~~~~lk~G~~IIs  156 (205)
T PF08123_consen  110 FLDPDFVKDI--WSDADVVFVNNTCF----D-PDLNLALAELLLELKPGARIIS  156 (205)
T ss_dssp             TTTHHHHHHH--GHC-SEEEE--TTT------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred             ccccHhHhhh--hcCCCEEEEecccc----C-HHHHHHHHHHHhcCCCCCEEEE
Confidence            8765432110  13469999988653    2 4556666788888988877654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.62  E-value=4.3e-07  Score=78.99  Aligned_cols=113  Identities=12%  Similarity=0.123  Sum_probs=73.8

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC---
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA---  161 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---  161 (262)
                      +.+|||++||+|.++..+++. ..+|+|+|+++.+++.|++++...+         ..+++++++|+.+.- .....   
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~---------~~~v~~~~~d~~~~l-~~~~~~~~  275 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANG---------IDNVQIIRMSAEEFT-QAMNGVRE  275 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhC---------CCcEEEEECCHHHHH-HHHhhccc
Confidence            357999999999999977654 4589999999999999999876322         236899999986642 11100   


Q ss_pred             ---------CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797          162 ---------DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE  218 (262)
Q Consensus       162 ---------~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~  218 (262)
                               ...+||+|++.---.-+      ...+++.+.+   +++++++++ |+..+.+.+..
T Consensus       276 ~~~~~~~~~~~~~~D~v~lDPPR~G~------~~~~l~~l~~---~~~ivyvSC-~p~tlarDl~~  331 (362)
T PRK05031        276 FNRLKGIDLKSYNFSTIFVDPPRAGL------DDETLKLVQA---YERILYISC-NPETLCENLET  331 (362)
T ss_pred             ccccccccccCCCCCEEEECCCCCCC------cHHHHHHHHc---cCCEEEEEe-CHHHHHHHHHH
Confidence                     01258999976532211      2344444443   677777665 44555554444

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=98.62  E-value=2e-07  Score=78.41  Aligned_cols=97  Identities=21%  Similarity=0.216  Sum_probs=81.0

Q ss_pred             CeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCC
Q 024797           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP  165 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  165 (262)
                      ...+|+|.|.|+.+..++. ...++-|+++....+..++..+.             ..|+.+-+|+.+- .     |.  
T Consensus       179 ~~avDvGgGiG~v~k~ll~-~fp~ik~infdlp~v~~~a~~~~-------------~gV~~v~gdmfq~-~-----P~--  236 (342)
T KOG3178|consen  179 NVAVDVGGGIGRVLKNLLS-KYPHIKGINFDLPFVLAAAPYLA-------------PGVEHVAGDMFQD-T-----PK--  236 (342)
T ss_pred             ceEEEcCCcHhHHHHHHHH-hCCCCceeecCHHHHHhhhhhhc-------------CCcceeccccccc-C-----CC--
Confidence            6899999999999999887 66679999999888888777662             1277788888664 3     33  


Q ss_pred             eeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       166 fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      -|+|++-+++||+  +.++..++|+++++.|+|||.+++..
T Consensus       237 ~daI~mkWiLhdw--tDedcvkiLknC~~sL~~~GkIiv~E  275 (342)
T KOG3178|consen  237 GDAIWMKWILHDW--TDEDCVKILKNCKKSLPPGGKIIVVE  275 (342)
T ss_pred             cCeEEEEeecccC--ChHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            3699999999999  88999999999999999999988753

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.62  E-value=8.7e-07  Score=83.49  Aligned_cols=118  Identities=15%  Similarity=0.114  Sum_probs=82.1

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-------------------------------------------CCCeEEEEeCChhH
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-------------------------------------------KIGYYVGIDIAEGS  119 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-------------------------------------------~~~~v~gvD~s~~~  119 (262)
                      .++..++|.+||+|.++++.+..                                           ....++|+|+++.+
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            35789999999999998876431                                           01258999999999


Q ss_pred             HHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhcc---
Q 024797          120 IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL---  196 (262)
Q Consensus       120 ~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L---  196 (262)
                      ++.|++++...        ++...+.+.++|+.+++...   ..++||+|+++--...-.....+...+...+.+.+   
T Consensus       269 v~~A~~N~~~~--------g~~~~i~~~~~D~~~~~~~~---~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~  337 (702)
T PRK11783        269 IQAARKNARRA--------GVAELITFEVKDVADLKNPL---PKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQ  337 (702)
T ss_pred             HHHHHHHHHHc--------CCCcceEEEeCChhhccccc---ccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHh
Confidence            99999998743        33456899999998875410   23579999998654332223344444544444444   


Q ss_pred             CCCcEEEEEeCChHH
Q 024797          197 RPGGTFIGTMPDANV  211 (262)
Q Consensus       197 ~~gG~li~~~~~~~~  211 (262)
                      .+|+.+++.+++...
T Consensus       338 ~~g~~~~llt~~~~l  352 (702)
T PRK11783        338 FGGWNAALFSSSPEL  352 (702)
T ss_pred             CCCCeEEEEeCCHHH
Confidence            489999888887653

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.61  E-value=4.3e-07  Score=78.69  Aligned_cols=114  Identities=11%  Similarity=0.032  Sum_probs=72.9

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc---C
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL---A  161 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~  161 (262)
                      +.+|||++||+|.++..+++. ...|+|+|+++++++.|++++...+         ..++.++++|+.++......   .
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~---------~~~v~~~~~d~~~~~~~~~~~~~~  267 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANN---------IDNVQIIRMSAEEFTQAMNGVREF  267 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcC---------CCcEEEEEcCHHHHHHHHhhcccc
Confidence            347999999999999977654 3589999999999999999886322         23589999998764210000   0


Q ss_pred             ---C-----CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797          162 ---D-----DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE  218 (262)
Q Consensus       162 ---~-----~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~  218 (262)
                         .     ...||+|++.---.-+      ...++..+.   +|++++++++ |+..+.+.+..
T Consensus       268 ~~~~~~~~~~~~~d~v~lDPPR~G~------~~~~l~~l~---~~~~ivYvsC-~p~tlaRDl~~  322 (353)
T TIGR02143       268 RRLKGIDLKSYNCSTIFVDPPRAGL------DPDTCKLVQ---AYERILYISC-NPETLKANLEQ  322 (353)
T ss_pred             ccccccccccCCCCEEEECCCCCCC------cHHHHHHHH---cCCcEEEEEc-CHHHHHHHHHH
Confidence               0     1237999875532111      233444443   3677777664 44555554443

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.60  E-value=2.7e-07  Score=80.09  Aligned_cols=107  Identities=11%  Similarity=0.080  Sum_probs=82.4

Q ss_pred             CCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      +.+|||+.||+|..++.++..  +...|+++|+++++++.+++++...+         ..+++++++|+..+...    .
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~---------~~~~~v~~~Da~~~l~~----~  111 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNS---------VENIEVPNEDAANVLRY----R  111 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhC---------CCcEEEEchhHHHHHHH----h
Confidence            358999999999999998875  45689999999999999999886321         12478999998766321    2


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      ..+||+|.+.- +.       .+..++..+.+.+++||.+.++..|...+
T Consensus       112 ~~~fDvIdlDP-fG-------s~~~fld~al~~~~~~glL~vTaTD~~~L  153 (374)
T TIGR00308       112 NRKFHVIDIDP-FG-------TPAPFVDSAIQASAERGLLLVTATDTSAL  153 (374)
T ss_pred             CCCCCEEEeCC-CC-------CcHHHHHHHHHhcccCCEEEEEecccHHh
Confidence            35799998765 32       23468889999999999999996655443

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.59  E-value=5.8e-08  Score=85.18  Aligned_cols=117  Identities=19%  Similarity=0.240  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHHHhc--cCC--CeEEEecCCCCcchHHHHhcCCCeEEEE---eCChhHHHHHHHHhccCccccccccCC
Q 024797           68 KLNNWIKSVLVQLYA--RRG--DVVLDLACGKGGDLIKWDKAKIGYYVGI---DIAEGSIEDCRTRYNGDADHHQRRKKF  140 (262)
Q Consensus        68 ~~~~~~~~~l~~~~~--~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gv---D~s~~~~~~a~~~~~~~~~~~~~~~~~  140 (262)
                      ....+++.+...+..  ..+  .++||+|||.|.++..++.... ....+   |..+.+++.|-++.-            
T Consensus        97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleRGv------------  163 (506)
T PF03141_consen   97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALERGV------------  163 (506)
T ss_pred             CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhcCc------------
Confidence            444555544443332  222  3799999999999999876443 22222   444556666655421            


Q ss_pred             CCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          141 SFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       141 ~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +  ..+-..--..+|+     +++.||+|-|..++....   .+-..+|-++.|+|+|||+++.+.|
T Consensus       164 p--a~~~~~~s~rLPf-----p~~~fDmvHcsrc~i~W~---~~~g~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  164 P--AMIGVLGSQRLPF-----PSNAFDMVHCSRCLIPWH---PNDGFLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             c--hhhhhhccccccC-----Cccchhhhhcccccccch---hcccceeehhhhhhccCceEEecCC
Confidence            1  1111222356777     899999999998776541   1224688999999999999999876

; GO: 0008168 methyltransferase activity

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.57  E-value=2e-06  Score=73.72  Aligned_cols=141  Identities=16%  Similarity=0.139  Sum_probs=95.2

Q ss_pred             chhHHHHHHHHHHHHh-ccCCCeEEEecCCCCcchHHHHhcCC---------------------------------C---
Q 024797           66 LKKLNNWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKAKI---------------------------------G---  108 (262)
Q Consensus        66 ~~~~~~~~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------~---  108 (262)
                      ...+.+-+...+..+. -.++..++|.-||+|.+.++.+.-..                                 .   
T Consensus       172 ~ApLketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~  251 (381)
T COG0116         172 PAPLKETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG  251 (381)
T ss_pred             CCCchHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc
Confidence            3444444544444433 34567999999999999887654211                                 1   


Q ss_pred             ----eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCH--
Q 024797          109 ----YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE--  182 (262)
Q Consensus       109 ----~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~--  182 (262)
                          .++|+|+++.+++.|+.++...        +....|+|.++|+..++.     +.+.+|+||++--.---+.+.  
T Consensus       252 ~~~~~~~G~Did~r~i~~Ak~NA~~A--------Gv~d~I~f~~~d~~~l~~-----~~~~~gvvI~NPPYGeRlg~~~~  318 (381)
T COG0116         252 KELPIIYGSDIDPRHIEGAKANARAA--------GVGDLIEFKQADATDLKE-----PLEEYGVVISNPPYGERLGSEAL  318 (381)
T ss_pred             CccceEEEecCCHHHHHHHHHHHHhc--------CCCceEEEEEcchhhCCC-----CCCcCCEEEeCCCcchhcCChhh
Confidence                3779999999999999998743        456679999999998874     227899999986322111122  


Q ss_pred             -H-HHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhhh
Q 024797          183 -A-RARRALANVSALLRPGGTFIGTMPDANVIIKKLREV  219 (262)
Q Consensus       183 -~-~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~  219 (262)
                       . ....+.+.+++.++..+.+++++...-.....++..
T Consensus       319 v~~LY~~fg~~lk~~~~~ws~~v~tt~e~~~~~~~~ra~  357 (381)
T COG0116         319 VAKLYREFGRTLKRLLAGWSRYVFTTSEDLLFCLGLRAD  357 (381)
T ss_pred             HHHHHHHHHHHHHHHhcCCceEEEEccHHHHHHHhhhhc
Confidence             2 345666677788888888888876654444444443

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.55  E-value=8e-07  Score=72.06  Aligned_cols=85  Identities=24%  Similarity=0.349  Sum_probs=67.7

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +..++......+++.|||+|-|||.++..+++.+ .+|+++++++.|+....++....        ......+++.+|+.
T Consensus        47 ~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~-kkVvA~E~Dprmvael~krv~gt--------p~~~kLqV~~gD~l  117 (315)
T KOG0820|consen   47 IDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAG-KKVVAVEIDPRMVAELEKRVQGT--------PKSGKLQVLHGDFL  117 (315)
T ss_pred             HHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhc-CeEEEEecCcHHHHHHHHHhcCC--------CccceeeEEecccc
Confidence            4445555667899999999999999999998654 48999999999999999988732        22356889999988


Q ss_pred             ccccccccCCCCCeeEEEEcc
Q 024797          153 EVHLDKVLADDAPFDICSCQF  173 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~  173 (262)
                      ..++       ..||+++.+.
T Consensus       118 K~d~-------P~fd~cVsNl  131 (315)
T KOG0820|consen  118 KTDL-------PRFDGCVSNL  131 (315)
T ss_pred             cCCC-------cccceeeccC
Confidence            7654       5789999854

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.52  E-value=1.2e-06  Score=74.54  Aligned_cols=103  Identities=24%  Similarity=0.188  Sum_probs=83.3

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .+|.+|||+-||-|.++..++..+...|+++|+++.+++..++++.-        ++....+..+++|+.....     .
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~L--------N~v~~~v~~i~gD~rev~~-----~  253 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRL--------NKVEGRVEPILGDAREVAP-----E  253 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHh--------cCccceeeEEeccHHHhhh-----c
Confidence            46999999999999999999887666699999999999999999873        3445558899999988864     2


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      -+.+|-|++...-        ....++..+.+.+++||.+.+..
T Consensus       254 ~~~aDrIim~~p~--------~a~~fl~~A~~~~k~~g~iHyy~  289 (341)
T COG2520         254 LGVADRIIMGLPK--------SAHEFLPLALELLKDGGIIHYYE  289 (341)
T ss_pred             cccCCEEEeCCCC--------cchhhHHHHHHHhhcCcEEEEEe
Confidence            3789999876532        23567788888888999987654

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.50  E-value=1.4e-06  Score=79.59  Aligned_cols=117  Identities=14%  Similarity=0.054  Sum_probs=72.3

Q ss_pred             CCCeEEEecCCCCcchHHHHhcC---------CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAK---------IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~---------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ...+|||.|||+|.++..++...         ...++|+|+++.++..++.++...+         ...+.+.+.|....
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~---------~~~~~i~~~d~l~~  101 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA---------LLEINVINFNSLSY  101 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC---------CCCceeeecccccc
Confidence            34689999999999998876521         1358999999999999998876321         11233444443321


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCH------------------------------------------HHHHHHH-HH
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTE------------------------------------------ARARRAL-AN  191 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~------------------------------------------~~~~~~l-~~  191 (262)
                      .........+.||+|+++--..-.-...                                          .....++ ..
T Consensus       102 ~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~  181 (524)
T TIGR02987       102 VLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEI  181 (524)
T ss_pred             cccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHH
Confidence            1100000235799999875333110000                                          0111233 56


Q ss_pred             HHhccCCCcEEEEEeCCh
Q 024797          192 VSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       192 ~~~~L~~gG~li~~~~~~  209 (262)
                      +.+.|++||++.+.+|+.
T Consensus       182 ~~~lL~~~G~~~~I~P~s  199 (524)
T TIGR02987       182 SLEIANKNGYVSIISPAS  199 (524)
T ss_pred             HHHhcCCCCEEEEEEChH
Confidence            889999999999888864

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=8.2e-07  Score=78.47  Aligned_cols=123  Identities=20%  Similarity=0.227  Sum_probs=84.1

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      .+..+...+++++||+-||.|.+++.++ ....+|+|+|+++++++.|++++...+         ..|+.|..++++.+.
T Consensus       285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA-~~~~~V~gvEi~~~aV~~A~~NA~~n~---------i~N~~f~~~~ae~~~  354 (432)
T COG2265         285 ALEWLELAGGERVLDLYCGVGTFGLPLA-KRVKKVHGVEISPEAVEAAQENAAANG---------IDNVEFIAGDAEEFT  354 (432)
T ss_pred             HHHHHhhcCCCEEEEeccCCChhhhhhc-ccCCEEEEEecCHHHHHHHHHHHHHcC---------CCcEEEEeCCHHHHh
Confidence            3334444577899999999999999996 355689999999999999999987433         345999999998876


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE  218 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~  218 (262)
                      ....  ....+|+|+..---.-+      -..+++.+ ..++|..+++++ .|+..+.+.+..
T Consensus       355 ~~~~--~~~~~d~VvvDPPR~G~------~~~~lk~l-~~~~p~~IvYVS-CNP~TlaRDl~~  407 (432)
T COG2265         355 PAWW--EGYKPDVVVVDPPRAGA------DREVLKQL-AKLKPKRIVYVS-CNPATLARDLAI  407 (432)
T ss_pred             hhcc--ccCCCCEEEECCCCCCC------CHHHHHHH-HhcCCCcEEEEe-CCHHHHHHHHHH
Confidence            4211  23578999976532211      12344444 445777777776 455555544433

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.48  E-value=3.4e-07  Score=72.57  Aligned_cols=116  Identities=22%  Similarity=0.294  Sum_probs=84.6

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ++.+.+|||.+.|-|..++..++.+...|+-++.+++.++.|+-+-=.       .......++++.+|+.+.-- +  +
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwS-------r~l~~~~i~iilGD~~e~V~-~--~  201 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWS-------RELFEIAIKIILGDAYEVVK-D--F  201 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCC-------ccccccccEEecccHHHHHh-c--C
Confidence            457899999999999999888877777899999999999988753110       01112358999999865421 1  2


Q ss_pred             CCCCeeEEEEccc-ccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          162 DDAPFDICSCQFA-MHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       162 ~~~~fD~V~~~~~-l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ++.+||+|+..-- +.+.  ..-.-.++.++++|+|+|||.++=.+.++
T Consensus       202 ~D~sfDaIiHDPPRfS~A--geLYseefY~El~RiLkrgGrlFHYvG~P  248 (287)
T COG2521         202 DDESFDAIIHDPPRFSLA--GELYSEEFYRELYRILKRGGRLFHYVGNP  248 (287)
T ss_pred             CccccceEeeCCCccchh--hhHhHHHHHHHHHHHcCcCCcEEEEeCCC
Confidence            6889999996542 1111  23345789999999999999998766554

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.47  E-value=9.9e-07  Score=72.19  Aligned_cols=88  Identities=16%  Similarity=0.138  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      .++.++......+++.|||||+|.|.++..+++... +|+++++++.++...++....           ..+++++.+|+
T Consensus        18 v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~-----------~~n~~vi~~Da   85 (259)
T COG0030          18 VIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAP-----------YDNLTVINGDA   85 (259)
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhccc-----------ccceEEEeCch
Confidence            366677777777889999999999999999987554 799999999999999988641           45799999999


Q ss_pred             cccccccccCCCCCeeEEEEcccc
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAM  175 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l  175 (262)
                      ...++....    .++.|+++--.
T Consensus        86 Lk~d~~~l~----~~~~vVaNlPY  105 (259)
T COG0030          86 LKFDFPSLA----QPYKVVANLPY  105 (259)
T ss_pred             hcCcchhhc----CCCEEEEcCCC
Confidence            988872111    57888876544

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=98.47  E-value=3e-07  Score=79.21  Aligned_cols=107  Identities=21%  Similarity=0.226  Sum_probs=88.7

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++..++|+|||-|.....+.......++|+|.++..+..+........+++        ...++.+|+...++     
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~--------k~~~~~~~~~~~~f-----  174 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDN--------KCNFVVADFGKMPF-----  174 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhh--------hcceehhhhhcCCC-----
Confidence            34677899999999998888766666689999999999998887765433332        34457888888877     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      +++.||.+.+.-+.+|.    .+...++.++.++++|||+++..
T Consensus       175 edn~fd~v~~ld~~~~~----~~~~~~y~Ei~rv~kpGG~~i~~  214 (364)
T KOG1269|consen  175 EDNTFDGVRFLEVVCHA----PDLEKVYAEIYRVLKPGGLFIVK  214 (364)
T ss_pred             CccccCcEEEEeecccC----CcHHHHHHHHhcccCCCceEEeH
Confidence            79999999999999998    77899999999999999999874

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.46  E-value=1.8e-06  Score=68.01  Aligned_cols=116  Identities=26%  Similarity=0.285  Sum_probs=79.9

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++..|+|+||.+|..+..+++.  ..+.|+|+|+.+         .           ....+|.++++|++.-+....
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p---------~-----------~~~~~V~~iq~d~~~~~~~~~  102 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILP---------M-----------KPIPGVIFLQGDITDEDTLEK  102 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcc---------c-----------ccCCCceEEeeeccCccHHHH
Confidence            357899999999999999988763  334599999977         1           113459999999976543211


Q ss_pred             ---cCCCCCeeEEEEcccc--------cccCCCHHHHHHHHHHHHhccCCCcEEEEEeC---ChHHHHHHHhh
Q 024797          160 ---LADDAPFDICSCQFAM--------HYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLRE  218 (262)
Q Consensus       160 ---~~~~~~fD~V~~~~~l--------~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~---~~~~~~~~~~~  218 (262)
                         .....++|+|++.++-        .|. ........++.-+..+|+|||.+++.+.   +.+.++..++.
T Consensus       103 l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~-r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~  174 (205)
T COG0293         103 LLEALGGAPVDVVLSDMAPNTSGNRSVDHA-RSMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRR  174 (205)
T ss_pred             HHHHcCCCCcceEEecCCCCcCCCccccHH-HHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHH
Confidence               1134568999987643        332 1223346677778889999999998764   55566666554

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.44  E-value=1.1e-06  Score=69.08  Aligned_cols=131  Identities=21%  Similarity=0.297  Sum_probs=88.0

Q ss_pred             ccchhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEE
Q 024797           33 DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVG  112 (262)
Q Consensus        33 ~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~g  112 (262)
                      +..-+..|......|.........++...-+.+...+...+...+....  ....|+|..||.|..+..++.... .|++
T Consensus        45 ~p~l~kywk~ryrlfsrfd~gi~md~e~wfsvTpe~ia~~iA~~v~~~~--~~~~iidaf~g~gGntiqfa~~~~-~Vis  121 (263)
T KOG2730|consen   45 NPELFKYWKNRYRLFSRFDSGIYMDREGWFSVTPEKIAEHIANRVVACM--NAEVIVDAFCGVGGNTIQFALQGP-YVIA  121 (263)
T ss_pred             ChHHHHHHHHHHHHHHhhccceeecccceEEeccHHHHHHHHHHHHHhc--CcchhhhhhhcCCchHHHHHHhCC-eEEE
Confidence            3455567776666666544444455555555556666666655554443  456899999999888877764443 7999


Q ss_pred             EeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccc
Q 024797          113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAM  175 (262)
Q Consensus       113 vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l  175 (262)
                      ||+++.-+..|+.+++-.|        .+.+|+|+|||+.++- ..+.+....+|+|+.+...
T Consensus       122 IdiDPikIa~AkhNaeiYG--------I~~rItFI~GD~ld~~-~~lq~~K~~~~~vf~sppw  175 (263)
T KOG2730|consen  122 IDIDPVKIACARHNAEVYG--------VPDRITFICGDFLDLA-SKLKADKIKYDCVFLSPPW  175 (263)
T ss_pred             EeccHHHHHHHhccceeec--------CCceeEEEechHHHHH-HHHhhhhheeeeeecCCCC
Confidence            9999999999999887544        4568999999987652 1111133457788765533

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.43  E-value=6.1e-06  Score=71.52  Aligned_cols=118  Identities=18%  Similarity=0.232  Sum_probs=84.1

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhcC---CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKAK---IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (262)
                      +.+.++.+|||+++++|.=+..++...   ...|+++|.++.-+...++++...+..|         +...+.|...++-
T Consensus       152 L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n---------v~~~~~d~~~~~~  222 (355)
T COG0144         152 LDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN---------VIVVNKDARRLAE  222 (355)
T ss_pred             cCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc---------eEEEecccccccc
Confidence            456789999999999999888887632   2357999999999999999988665443         7788888765432


Q ss_pred             ccccCCCCCeeEEEEcc------ccccc------CC------CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          157 DKVLADDAPFDICSCQF------AMHYS------WS------TEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~------~l~~~------~~------~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ..  ...++||.|++..      ++.--      +.      -...+.++|..+.+.|||||.|+-++.+
T Consensus       223 ~~--~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS  290 (355)
T COG0144         223 LL--PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS  290 (355)
T ss_pred             cc--cccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence            10  0223699999753      22100      00      1123578899999999999999988753

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=98.43  E-value=3e-06  Score=67.22  Aligned_cols=105  Identities=20%  Similarity=0.218  Sum_probs=71.9

Q ss_pred             HHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhH----HHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           79 QLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGS----IEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~----~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      .+...++.+||-+|+++|.....+..  ...+.|++|++|+..    +..|+++               .|+-.+..|+.
T Consensus        68 ~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---------------~NIiPIl~DAr  132 (229)
T PF01269_consen   68 NIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---------------PNIIPILEDAR  132 (229)
T ss_dssp             --S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---------------TTEEEEES-TT
T ss_pred             ccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---------------CceeeeeccCC
Confidence            34567899999999999988888765  457799999999965    4444443               35888999987


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ....-..  --+.+|+|++.-+..      +..+-++.++...||+||.+++.+
T Consensus       133 ~P~~Y~~--lv~~VDvI~~DVaQp------~Qa~I~~~Na~~fLk~gG~~~i~i  178 (229)
T PF01269_consen  133 HPEKYRM--LVEMVDVIFQDVAQP------DQARIAALNARHFLKPGGHLIISI  178 (229)
T ss_dssp             SGGGGTT--TS--EEEEEEE-SST------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ChHHhhc--ccccccEEEecCCCh------HHHHHHHHHHHhhccCCcEEEEEE
Confidence            5332111  135899999876542      456677888889999999999875

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=3.2e-06  Score=68.63  Aligned_cols=118  Identities=16%  Similarity=0.168  Sum_probs=88.7

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      ..++..+...||.+|||-|.|+|.++..+++  .+.++++-+|+-..-.+.|.+.+.+        +..+.++++..-|+
T Consensus        95 a~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~--------hgi~~~vt~~hrDV  166 (314)
T KOG2915|consen   95 AMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFRE--------HGIGDNVTVTHRDV  166 (314)
T ss_pred             HHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHH--------hCCCcceEEEEeec
Confidence            3455666788999999999999999999887  4678999999999888889888875        34678899999998


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcE-EEEEeCChHH
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT-FIGTMPDANV  211 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~-li~~~~~~~~  211 (262)
                      ...-+..   .+..+|.|++..         +.+..++..+..+||.+|. ++.-.|-.+.
T Consensus       167 c~~GF~~---ks~~aDaVFLDl---------PaPw~AiPha~~~lk~~g~r~csFSPCIEQ  215 (314)
T KOG2915|consen  167 CGSGFLI---KSLKADAVFLDL---------PAPWEAIPHAAKILKDEGGRLCSFSPCIEQ  215 (314)
T ss_pred             ccCCccc---cccccceEEEcC---------CChhhhhhhhHHHhhhcCceEEeccHHHHH
Confidence            7655421   367899998755         3344566777788988774 4443444443

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.38  E-value=3.9e-06  Score=66.94  Aligned_cols=97  Identities=18%  Similarity=0.142  Sum_probs=75.6

Q ss_pred             CCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           85 GDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      +.+++|||+|.|--+..++- .+..+|+.+|....-+...+....+++..         |++++++.++++..      .
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~---------nv~i~~~RaE~~~~------~  132 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE---------NVEIVHGRAEEFGQ------E  132 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC---------CeEEehhhHhhccc------c
Confidence            58999999999988887763 45556999999998888887777665544         39999999988763      3


Q ss_pred             CC-eeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          164 AP-FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       164 ~~-fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      .. ||+|++..+-.        ...++.-+...+++||.+++
T Consensus       133 ~~~~D~vtsRAva~--------L~~l~e~~~pllk~~g~~~~  166 (215)
T COG0357         133 KKQYDVVTSRAVAS--------LNVLLELCLPLLKVGGGFLA  166 (215)
T ss_pred             cccCcEEEeehccc--------hHHHHHHHHHhcccCCcchh
Confidence            34 99999877543        45677778999999988754

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.34  E-value=7.9e-06  Score=68.37  Aligned_cols=108  Identities=18%  Similarity=0.175  Sum_probs=69.0

Q ss_pred             cCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..+.+|||+|||+|.-+-.+..  .....++++|.|+.|++.++........        ...... .........    
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~--------~~~~~~-~~~~~~~~~----   98 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPN--------NRNAEW-RRVLYRDFL----   98 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccc--------cccchh-hhhhhcccc----
Confidence            3567999999999964433322  2345799999999999999887653110        000101 111110000    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                       +....|+|++.++|..+.+  ..+..+++.+.+.+.+  .||+.-|.
T Consensus        99 -~~~~~DLvi~s~~L~EL~~--~~r~~lv~~LW~~~~~--~LVlVEpG  141 (274)
T PF09243_consen   99 -PFPPDDLVIASYVLNELPS--AARAELVRSLWNKTAP--VLVLVEPG  141 (274)
T ss_pred             -cCCCCcEEEEehhhhcCCc--hHHHHHHHHHHHhccC--cEEEEcCC
Confidence             1223499999999998833  7788899999888876  76666553

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.33  E-value=1.4e-05  Score=69.41  Aligned_cols=122  Identities=20%  Similarity=0.223  Sum_probs=69.8

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ++..+...++ +|||+-||.|.+++.++. ...+|+|||+++.+++.|++++...+         ..+++|+++++.++.
T Consensus       189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~-~~~~V~gvE~~~~av~~A~~Na~~N~---------i~n~~f~~~~~~~~~  257 (352)
T PF05958_consen  189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAK-KAKKVIGVEIVEEAVEDARENAKLNG---------IDNVEFIRGDAEDFA  257 (352)
T ss_dssp             HHHHCTT-TT-EEEEES-TTTCCHHHHHC-CSSEEEEEES-HHHHHHHHHHHHHTT-----------SEEEEE--SHHCC
T ss_pred             HHHHhhcCCC-cEEEEeecCCHHHHHHHh-hCCeEEEeeCCHHHHHHHHHHHHHcC---------CCcceEEEeeccchh
Confidence            3333433344 899999999999999864 55689999999999999999987433         346999988875532


Q ss_pred             cc-----------cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797          156 LD-----------KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE  218 (262)
Q Consensus       156 ~~-----------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~  218 (262)
                      ..           ........+|+|+..-.-.-+  .    ..++..+.+   +. .++-...|+..+.+.+..
T Consensus       258 ~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~--~----~~~~~~~~~---~~-~ivYvSCnP~tlaRDl~~  321 (352)
T PF05958_consen  258 KALAKAREFNRLKGIDLKSFKFDAVILDPPRAGL--D----EKVIELIKK---LK-RIVYVSCNPATLARDLKI  321 (352)
T ss_dssp             CHHCCS-GGTTGGGS-GGCTTESEEEE---TT-S--C----HHHHHHHHH---SS-EEEEEES-HHHHHHHHHH
T ss_pred             HHHHhhHHHHhhhhhhhhhcCCCEEEEcCCCCCc--h----HHHHHHHhc---CC-eEEEEECCHHHHHHHHHH
Confidence            10           000023468999875422211  1    223333332   23 555555777777666554

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.33  E-value=9e-06  Score=61.46  Aligned_cols=101  Identities=25%  Similarity=0.465  Sum_probs=69.4

Q ss_pred             EEEecCCCCcchHHHHhc-CC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCC-eEEEeCcccc--cccccccCC
Q 024797           88 VLDLACGKGGDLIKWDKA-KI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGDCYE--VHLDKVLAD  162 (262)
Q Consensus        88 vLDiGcG~G~~~~~l~~~-~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~--~~~~~~~~~  162 (262)
                      ++|+|||+|... .+... .. ..++|+|+++.++..++.....          .... +.+..+|...  .++     .
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~-----~  115 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG----------AGLGLVDFVVADALGGVLPF-----E  115 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh----------cCCCceEEEEeccccCCCCC-----C
Confidence            999999999865 22222 22 3789999999999995554321          0111 5677777765  454     3


Q ss_pred             C-CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          163 D-APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       163 ~-~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      . ..||++......++.  .   ....+.++.+.|+|+|.+++.....
T Consensus       116 ~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~l~~~g~~~~~~~~~  158 (257)
T COG0500         116 DSASFDLVISLLVLHLL--P---PAKALRELLRVLKPGGRLVLSDLLR  158 (257)
T ss_pred             CCCceeEEeeeeehhcC--C---HHHHHHHHHHhcCCCcEEEEEeccC
Confidence            4 489999444444443  2   7889999999999999998887643

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.31  E-value=1.2e-06  Score=66.83  Aligned_cols=76  Identities=25%  Similarity=0.437  Sum_probs=52.9

Q ss_pred             CeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCC
Q 024797           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP  165 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  165 (262)
                      ..|+|+.||.|..+..+++. ..+|+++|+++..++.|+.++...+.        ..++.++++|+.++... .. ....
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv--------~~~I~~i~gD~~~~~~~-~~-~~~~   69 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGV--------ADNIDFICGDFFELLKR-LK-SNKI   69 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT---------GGGEEEEES-HHHHGGG-B------
T ss_pred             CEEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCC--------CCcEEEEeCCHHHHHhh-cc-cccc
Confidence            36999999999999999765 55899999999999999999875443        45799999999775321 10 1112


Q ss_pred             eeEEEEc
Q 024797          166 FDICSCQ  172 (262)
Q Consensus       166 fD~V~~~  172 (262)
                      +|+|+++
T Consensus        70 ~D~vFlS   76 (163)
T PF09445_consen   70 FDVVFLS   76 (163)
T ss_dssp             -SEEEE-
T ss_pred             ccEEEEC
Confidence            8999975

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.29  E-value=1.7e-05  Score=63.03  Aligned_cols=108  Identities=19%  Similarity=0.184  Sum_probs=80.8

Q ss_pred             cCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      -.++++||+|.=+|.-+..++.  ...++|+++|++++..+.+.+.....        +....++++++++.+.- .++.
T Consensus        72 ~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a--------gv~~KI~~i~g~a~esL-d~l~  142 (237)
T KOG1663|consen   72 LNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA--------GVDHKITFIEGPALESL-DELL  142 (237)
T ss_pred             hCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc--------cccceeeeeecchhhhH-HHHH
Confidence            3678999999999877666654  46779999999999999998776643        34557999999875421 1111


Q ss_pred             --CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                        .+.++||.++...       ..........++.+.+|+||+|++..
T Consensus       143 ~~~~~~tfDfaFvDa-------dK~nY~~y~e~~l~Llr~GGvi~~DN  183 (237)
T KOG1663|consen  143 ADGESGTFDFAFVDA-------DKDNYSNYYERLLRLLRVGGVIVVDN  183 (237)
T ss_pred             hcCCCCceeEEEEcc-------chHHHHHHHHHHHhhcccccEEEEec
Confidence              1468999998654       22445588999999999999999853

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.27  E-value=1.7e-05  Score=59.64  Aligned_cols=118  Identities=24%  Similarity=0.218  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHH-HhccCCCeEEEecCCCCcchHHHHh-----cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCC
Q 024797           69 LNNWIKSVLVQ-LYARRGDVVLDLACGKGGDLIKWDK-----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF  142 (262)
Q Consensus        69 ~~~~~~~~l~~-~~~~~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~  142 (262)
                      +...+..+... ....+..+|+|+|||.|.++..++.     ...-.|+|+|.++..++.+.++......      ....
T Consensus         9 ~~~~i~~~~~~~~~~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~------~~~~   82 (141)
T PF13679_consen    9 MAELIDSLCDSVGESKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGS------DLEK   82 (141)
T ss_pred             HHHHHHHHHHHhhccCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcc------hhhc
Confidence            33334444333 2235678999999999999988876     5556899999999999999888764321      1123


Q ss_pred             CeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       143 ~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +..+..++.....      .....++++...+.--      --..+++.+.+   ++-.+++.+|
T Consensus        83 ~~~~~~~~~~~~~------~~~~~~~~vgLHaCG~------Ls~~~l~~~~~---~~~~~l~~vp  132 (141)
T PF13679_consen   83 RLSFIQGDIADES------SSDPPDILVGLHACGD------LSDRALRLFIR---PNARFLVLVP  132 (141)
T ss_pred             cchhhccchhhhc------ccCCCeEEEEeecccc------hHHHHHHHHHH---cCCCEEEEcC
Confidence            4556666554432      2455677775544431      23344555544   5555555444

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.25  E-value=7.5e-06  Score=71.88  Aligned_cols=107  Identities=22%  Similarity=0.300  Sum_probs=86.9

Q ss_pred             cCCC-eEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGD-VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~-~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .+.. ++|-+|||.-.+...+.+.+...++-+|+|+..++.+..+..          .......+...|+..+.+     
T Consensus        46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~----------~~~~~~~~~~~d~~~l~f-----  110 (482)
T KOG2352|consen   46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA----------KERPEMQMVEMDMDQLVF-----  110 (482)
T ss_pred             chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc----------cCCcceEEEEecchhccC-----
Confidence            3445 999999999988888877788889999999999988877653          114457889999998887     


Q ss_pred             CCCCeeEEEEcccccccCCCHHH------HHHHHHHHHhccCCCcEEEE
Q 024797          162 DDAPFDICSCQFAMHYSWSTEAR------ARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~------~~~~l~~~~~~L~~gG~li~  204 (262)
                      ++++||+|+.-+.+++++.+...      ....+.+++++|++||+++.
T Consensus       111 edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s  159 (482)
T KOG2352|consen  111 EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS  159 (482)
T ss_pred             CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence            89999999999999887654433      34678999999999999654

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.22  E-value=2.8e-05  Score=64.76  Aligned_cols=91  Identities=18%  Similarity=0.220  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      ..++.++..+...++..|||+|+|.|.++..++... .+++++|+++.+++..++++..           ..+++++.+|
T Consensus        17 ~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~-----------~~~~~vi~~D   84 (262)
T PF00398_consen   17 NIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS-----------NPNVEVINGD   84 (262)
T ss_dssp             HHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT-----------CSSEEEEES-
T ss_pred             HHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh-----------cccceeeecc
Confidence            345566666666789999999999999999998766 6899999999999999987652           4579999999


Q ss_pred             ccccccccccCCCCCeeEEEEcccc
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAM  175 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l  175 (262)
                      +..+......  .+....|+++...
T Consensus        85 ~l~~~~~~~~--~~~~~~vv~NlPy  107 (262)
T PF00398_consen   85 FLKWDLYDLL--KNQPLLVVGNLPY  107 (262)
T ss_dssp             TTTSCGGGHC--SSSEEEEEEEETG
T ss_pred             hhccccHHhh--cCCceEEEEEecc
Confidence            9988763211  2345666665444

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.15  E-value=1.7e-05  Score=66.70  Aligned_cols=116  Identities=22%  Similarity=0.313  Sum_probs=83.7

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +.+.++..|||+++|+|.-+..++..  ..+.+++.|+++.-+...+.++...+.         .++.....|.......
T Consensus        81 L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~---------~~v~~~~~D~~~~~~~  151 (283)
T PF01189_consen   81 LDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV---------FNVIVINADARKLDPK  151 (283)
T ss_dssp             HTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT----------SSEEEEESHHHHHHHH
T ss_pred             ccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC---------ceEEEEeecccccccc
Confidence            45678899999999999988887763  457899999999999999988875543         3477777887665211


Q ss_pred             cccCCCCCeeEEEEcc------cccccCC------------CHHHHHHHHHHHHhcc----CCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQF------AMHYSWS------------TEARARRALANVSALL----RPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~------~l~~~~~------------~~~~~~~~l~~~~~~L----~~gG~li~~~~  207 (262)
                      .   ....||.|++..      ++..-.+            -...+.++|+.+.+.+    +|||+++-++.
T Consensus       152 ~---~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC  220 (283)
T PF01189_consen  152 K---PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC  220 (283)
T ss_dssp             H---HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred             c---cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence            0   234699999743      1111100            0123577899999999    99999998875

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=98.12  E-value=4.9e-07  Score=70.36  Aligned_cols=94  Identities=15%  Similarity=0.183  Sum_probs=69.6

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      .+.++||+|+|.|..+..++ .....|+++++|..|..+.+++--              +|    ....+...     .+
T Consensus       112 ~~~~lLDlGAGdGeit~~m~-p~feevyATElS~tMr~rL~kk~y--------------nV----l~~~ew~~-----t~  167 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMA-PTFEEVYATELSWTMRDRLKKKNY--------------NV----LTEIEWLQ-----TD  167 (288)
T ss_pred             CCeeEEeccCCCcchhhhhc-chHHHHHHHHhhHHHHHHHhhcCC--------------ce----eeehhhhh-----cC
Confidence            34689999999999888773 345579999999999988876421              11    11112111     34


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCC-CcEEEEE
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRP-GGTFIGT  205 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~-gG~li~~  205 (262)
                      -++|+|.|.+.+...    .++-++++.++.+|+| +|.+|+.
T Consensus       168 ~k~dli~clNlLDRc----~~p~kLL~Di~~vl~psngrviva  206 (288)
T KOG3987|consen  168 VKLDLILCLNLLDRC----FDPFKLLEDIHLVLAPSNGRVIVA  206 (288)
T ss_pred             ceeehHHHHHHHHhh----cChHHHHHHHHHHhccCCCcEEEE
Confidence            579999999988755    5677899999999999 8988765

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.12  E-value=7.4e-05  Score=59.61  Aligned_cols=117  Identities=15%  Similarity=0.060  Sum_probs=78.4

Q ss_pred             EEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCe
Q 024797           88 VLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF  166 (262)
Q Consensus        88 vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f  166 (262)
                      |.||||--|.+...+++.+ ..+++++|+++.-++.|++.....        ++..++++.++|..+.-.     +.+..
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~--------~l~~~i~~rlgdGL~~l~-----~~e~~   67 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY--------GLEDRIEVRLGDGLEVLK-----PGEDV   67 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--------T-TTTEEEEE-SGGGG-------GGG--
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--------CCcccEEEEECCcccccC-----CCCCC
Confidence            6899999999999998754 446999999999999999998843        445679999999755321     23337


Q ss_pred             eEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhhhcCCc
Q 024797          167 DICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLA  223 (262)
Q Consensus       167 D~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~  223 (262)
                      |+|++.+.=-      .....++.+....++....|++.-.+....++.+....++.
T Consensus        68 d~ivIAGMGG------~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~  118 (205)
T PF04816_consen   68 DTIVIAGMGG------ELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFE  118 (205)
T ss_dssp             -EEEEEEE-H------HHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEE
T ss_pred             CEEEEecCCH------HHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCE
Confidence            8888766332      55778888888888777778886555555555555544433

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.11  E-value=2.9e-05  Score=65.86  Aligned_cols=94  Identities=14%  Similarity=0.185  Sum_probs=68.6

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.++||+||++|.++..+++.+. .|++||..+ |-...   ..            ..+|....+|......     +
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~~L---~~------------~~~V~h~~~d~fr~~p-----~  267 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQSL---MD------------TGQVEHLRADGFKFRP-----P  267 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCHhh---hC------------CCCEEEEeccCcccCC-----C
Confidence            5789999999999999999987766 899999655 22211   11            4468888888766542     2


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC--cEEEEEe
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG--GTFIGTM  206 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g--G~li~~~  206 (262)
                      .+.+|+|+|..+..        +..+..-+.++|..|  ...|++.
T Consensus       268 ~~~vDwvVcDmve~--------P~rva~lm~~Wl~~g~cr~aIfnL  305 (357)
T PRK11760        268 RKNVDWLVCDMVEK--------PARVAELMAQWLVNGWCREAIFNL  305 (357)
T ss_pred             CCCCCEEEEecccC--------HHHHHHHHHHHHhcCcccEEEEEE
Confidence            57899999987653        456777788888766  4566654

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.10  E-value=4.5e-05  Score=62.64  Aligned_cols=130  Identities=14%  Similarity=0.115  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHHHHHhcc-CCCeEEEecCCC--CcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC
Q 024797           67 KKLNNWIKSVLVQLYAR-RGDVVLDLACGK--GGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS  141 (262)
Q Consensus        67 ~~~~~~~~~~l~~~~~~-~~~~vLDiGcG~--G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  141 (262)
                      +.-+.|+.+.+..+... .-...||+|||-  -...-.+++  .+..+|+-+|.++..+..++..+...         ..
T Consensus        50 r~nR~Fl~RaVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~---------~~  120 (267)
T PF04672_consen   50 RANRAFLRRAVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADN---------PR  120 (267)
T ss_dssp             HHHHHHHHHHHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT----------TT
T ss_pred             HHHHHHHHHHHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCC---------CC
Confidence            34445566666655544 335799999994  234555554  46678999999999999999987631         11


Q ss_pred             CCeEEEeCccccccc-------ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          142 FPARLICGDCYEVHL-------DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       142 ~~v~~~~~d~~~~~~-------~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ....++++|+.+..-       ..++ .-.+-=.|++..++||+ ++.+++..++..++..|.||.+|+++..
T Consensus       121 g~t~~v~aD~r~p~~iL~~p~~~~~l-D~~rPVavll~~vLh~v-~D~~dp~~iv~~l~d~lapGS~L~ish~  191 (267)
T PF04672_consen  121 GRTAYVQADLRDPEAILAHPEVRGLL-DFDRPVAVLLVAVLHFV-PDDDDPAGIVARLRDALAPGSYLAISHA  191 (267)
T ss_dssp             SEEEEEE--TT-HHHHHCSHHHHCC---TTS--EEEECT-GGGS--CGCTHHHHHHHHHCCS-TT-EEEEEEE
T ss_pred             ccEEEEeCCCCCHHHHhcCHHHHhcC-CCCCCeeeeeeeeeccC-CCccCHHHHHHHHHHhCCCCceEEEEec
Confidence            237899999876431       0111 22333356667788876 4556789999999999999999999853

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.06  E-value=6.9e-05  Score=64.59  Aligned_cols=116  Identities=16%  Similarity=0.155  Sum_probs=83.2

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +.+.++.+|||+++.+|.-+.+++.  ...+.+++.|.+..-+...+.++..+|..+         ......|...++..
T Consensus       237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n---------tiv~n~D~~ef~~~  307 (460)
T KOG1122|consen  237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN---------TIVSNYDGREFPEK  307 (460)
T ss_pred             cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc---------eEEEccCccccccc
Confidence            3466899999999999998877765  466789999999999999999887655433         55667777665422


Q ss_pred             cccCCCCCeeEEEEcccccc--c---------C-------CCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQFAMHY--S---------W-------STEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~--~---------~-------~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .  ++. +||-|+...-..-  +         +       .-...++++|..+...+++||+|+-++.
T Consensus       308 ~--~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC  372 (460)
T KOG1122|consen  308 E--FPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC  372 (460)
T ss_pred             c--cCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence            1  133 8999996431111  0         0       0123457889999999999999998764

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=98.04  E-value=2.7e-05  Score=59.88  Aligned_cols=106  Identities=24%  Similarity=0.249  Sum_probs=69.8

Q ss_pred             ccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC-ccccccc--
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHL--  156 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~--  156 (262)
                      ..|+.+|||+||.+|..+....+  .+.+.|.|||+-.        ..+            ...+.++++ |+.+...  
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh--------~~p------------~~Ga~~i~~~dvtdp~~~~  126 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH--------IEP------------PEGATIIQGNDVTDPETYR  126 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee--------ccC------------CCCcccccccccCCHHHHH
Confidence            45899999999999998887655  4778899999854        111            233666666 6654321  


Q ss_pred             --ccccCCCCCeeEEEEccccc--------ccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          157 --DKVLADDAPFDICSCQFAMH--------YSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       157 --~~~~~~~~~fD~V~~~~~l~--------~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                        .+.+ ++..+|+|++.+.-.        |. ...+....++.-....++|+|.+++.+++.
T Consensus       127 ki~e~l-p~r~VdvVlSDMapnaTGvr~~Dh~-~~i~LC~s~l~~al~~~~p~g~fvcK~w~g  187 (232)
T KOG4589|consen  127 KIFEAL-PNRPVDVVLSDMAPNATGVRIRDHY-RSIELCDSALLFALTLLIPNGSFVCKLWDG  187 (232)
T ss_pred             HHHHhC-CCCcccEEEeccCCCCcCcchhhHH-HHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence              1122 567899999876322        11 012233445555667789999999998753

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.04  E-value=2.1e-05  Score=66.16  Aligned_cols=91  Identities=18%  Similarity=0.147  Sum_probs=67.4

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      ++.++..+.+.++..++|.-||.|.++..++.. +.++|+|+|.++.+++.|++++..          ...++.+++++.
T Consensus         9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~----------~~~R~~~i~~nF   78 (305)
T TIGR00006         9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD----------FEGRVVLIHDNF   78 (305)
T ss_pred             HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh----------cCCcEEEEeCCH
Confidence            344555566678889999999999999999874 347999999999999999998762          234688999988


Q ss_pred             cccccccccCCCCCeeEEEEcc
Q 024797          152 YEVHLDKVLADDAPFDICSCQF  173 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~  173 (262)
                      .++...-......++|.|+...
T Consensus        79 ~~l~~~l~~~~~~~vDgIl~DL  100 (305)
T TIGR00006        79 ANFFEHLDELLVTKIDGILVDL  100 (305)
T ss_pred             HHHHHHHHhcCCCcccEEEEec
Confidence            7654210001235689998754

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.02  E-value=9.2e-06  Score=62.45  Aligned_cols=100  Identities=16%  Similarity=0.155  Sum_probs=75.5

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      .+.+.|+|+|+|.++... .+...+|++++.++.....|.+++.-         +...+++++.+|+....+       .
T Consensus        33 ~d~~~DLGaGsGiLs~~A-a~~A~rViAiE~dPk~a~~a~eN~~v---------~g~~n~evv~gDA~~y~f-------e   95 (252)
T COG4076          33 EDTFADLGAGSGILSVVA-AHAAERVIAIEKDPKRARLAEENLHV---------PGDVNWEVVVGDARDYDF-------E   95 (252)
T ss_pred             hhceeeccCCcchHHHHH-HhhhceEEEEecCcHHHHHhhhcCCC---------CCCcceEEEecccccccc-------c
Confidence            378999999999766654 44577899999999999999998642         224569999999998875       4


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                      ..|+|+|-+.=--+  -.+.+-.++..+.+.|+.++.++
T Consensus        96 ~ADvvicEmlDTaL--i~E~qVpV~n~vleFLr~d~tii  132 (252)
T COG4076          96 NADVVICEMLDTAL--IEEKQVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             ccceeHHHHhhHHh--hcccccHHHHHHHHHhhcCCccc
Confidence            56999885521111  12456678888888999999887

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=98.02  E-value=0.0001  Score=61.14  Aligned_cols=109  Identities=16%  Similarity=0.080  Sum_probs=65.8

Q ss_pred             CCeEEEecCCCCcchHHHHhc--C-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           85 GDVVLDLACGKGGDLIKWDKA--K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~--~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      +.+|+=||||+=-++..++..  . ...++++|+++++++.+++.....       .++..++.|+++|..+...     
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-------~~L~~~m~f~~~d~~~~~~-----  188 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-------LGLSKRMSFITADVLDVTY-----  188 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----------HH-SSEEEEES-GGGG-G-----
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-------ccccCCeEEEecchhcccc-----
Confidence            359999999986565555442  2 346899999999999999876511       1335679999999877654     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +-..||+|+...... +  +.+...+++.++.+.++||..+++-..+
T Consensus       189 dl~~~DvV~lAalVg-~--~~e~K~~Il~~l~~~m~~ga~l~~Rsa~  232 (276)
T PF03059_consen  189 DLKEYDVVFLAALVG-M--DAEPKEEILEHLAKHMAPGARLVVRSAH  232 (276)
T ss_dssp             G----SEEEE-TT-S-------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred             ccccCCEEEEhhhcc-c--ccchHHHHHHHHHhhCCCCcEEEEecch
Confidence            346899998766443 2  4567889999999999999999886443

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.02  E-value=0.00012  Score=57.69  Aligned_cols=106  Identities=19%  Similarity=0.093  Sum_probs=79.8

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+||++|-|-|....++-+.+...-+-++..++.+...++..-          .-..+|..+.+-.++... ++  +
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw----------~ek~nViil~g~WeDvl~-~L--~  166 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGW----------REKENVIILEGRWEDVLN-TL--P  166 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhccc----------ccccceEEEecchHhhhc-cc--c
Confidence            6789999999999966665544566678899999999999887643          113567777776554321 11  5


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ++.||-|+-.-.-.+.    ++...+.+.+.+.|||+|++-+.
T Consensus       167 d~~FDGI~yDTy~e~y----Edl~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  167 DKHFDGIYYDTYSELY----EDLRHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             ccCcceeEeechhhHH----HHHHHHHHHHhhhcCCCceEEEe
Confidence            7889999866554555    88999999999999999998654

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.99  E-value=0.00011  Score=57.33  Aligned_cols=109  Identities=14%  Similarity=0.108  Sum_probs=76.6

Q ss_pred             HHhccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           79 QLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      .+...++++||=+|+.+|.....+.. .+.+.+++|++|+.+....-..+.+           ..|+-.+.+|+....--
T Consensus        71 ~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~-----------R~Ni~PIL~DA~~P~~Y  139 (231)
T COG1889          71 NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK-----------RPNIIPILEDARKPEKY  139 (231)
T ss_pred             cCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh-----------CCCceeeecccCCcHHh
Confidence            34567899999999999998888765 3567899999999876655444432           33477788998653211


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ..  --+.+|+|+..-+--      ...+-+..++...|++||.+++.+
T Consensus       140 ~~--~Ve~VDviy~DVAQp------~Qa~I~~~Na~~FLk~~G~~~i~i  180 (231)
T COG1889         140 RH--LVEKVDVIYQDVAQP------NQAEILADNAEFFLKKGGYVVIAI  180 (231)
T ss_pred             hh--hcccccEEEEecCCc------hHHHHHHHHHHHhcccCCeEEEEE
Confidence            11  135699998765432      445667778899999999776653

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.89  E-value=0.00012  Score=62.08  Aligned_cols=118  Identities=15%  Similarity=0.063  Sum_probs=81.9

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHH--hccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTR--YNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      +...+||-+|.|.|--+.++++.+ ..+++-+|++|+|++.++..  +...+.    ..-...+++++..|+.++-..  
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~----~sf~dpRv~Vv~dDAf~wlr~--  361 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQ----GSFSDPRVTVVNDDAFQWLRT--  361 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhcc----CCccCCeeEEEeccHHHHHHh--
Confidence            345689999999998888888765 77899999999999999843  221111    112346799999998776432  


Q ss_pred             cCCCCCeeEEEEcccccccCC-CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          160 LADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                        ..+.||.||....=..-.. ..-.-..+..-+.+.|+++|.+++...+
T Consensus       362 --a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags  409 (508)
T COG4262         362 --AADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS  409 (508)
T ss_pred             --hcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence              3568999997652110000 1112356778899999999999986543

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=97.86  E-value=1.7e-05  Score=56.45  Aligned_cols=100  Identities=21%  Similarity=0.225  Sum_probs=44.7

Q ss_pred             EEecCCCCcchHHHHhc--CC--CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           89 LDLACGKGGDLIKWDKA--KI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        89 LDiGcG~G~~~~~l~~~--~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      ||+|+..|..+..+++.  ..  .+++++|..+. .+.+++.+.+        ..+..++++++++..+.- ...  +.+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~--------~~~~~~~~~~~g~s~~~l-~~~--~~~   68 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKK--------AGLSDRVEFIQGDSPDFL-PSL--PDG   68 (106)
T ss_dssp             --------------------------EEEESS---------------------GGG-BTEEEEES-THHHH-HHH--HH-
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhh--------cCCCCeEEEEEcCcHHHH-HHc--CCC
Confidence            68999999887777652  22  37999999995 2222222221        123456999999986541 111  247


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ++|+|+....-     ..+.....+..+...|+|||.+++.
T Consensus        69 ~~dli~iDg~H-----~~~~~~~dl~~~~~~l~~ggviv~d  104 (106)
T PF13578_consen   69 PIDLIFIDGDH-----SYEAVLRDLENALPRLAPGGVIVFD  104 (106)
T ss_dssp             -EEEEEEES--------HHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             CEEEEEECCCC-----CHHHHHHHHHHHHHHcCCCeEEEEe
Confidence            89999987732     2366778899999999999999874

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=97.85  E-value=5.3e-05  Score=58.76  Aligned_cols=107  Identities=21%  Similarity=0.175  Sum_probs=75.2

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      .+++|||+|+|+|-.....++.+...|+..|+.+..+..++-+...          ....+.+...|...        ++
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~a----------ngv~i~~~~~d~~g--------~~  140 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAA----------NGVSILFTHADLIG--------SP  140 (218)
T ss_pred             ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhh----------ccceeEEeeccccC--------CC
Confidence            6889999999999888777777777899999998777666655442          23457777777654        25


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      ..||+|+...++..    .....+++.-..+....|-.+++..|....+
T Consensus       141 ~~~Dl~LagDlfy~----~~~a~~l~~~~~~l~~~g~~vlvgdp~R~~l  185 (218)
T COG3897         141 PAFDLLLAGDLFYN----HTEADRLIPWKDRLAEAGAAVLVGDPGRAYL  185 (218)
T ss_pred             cceeEEEeeceecC----chHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence            78999998876652    3556677774444445555566666655443

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=97.85  E-value=0.0001  Score=58.08  Aligned_cols=161  Identities=16%  Similarity=0.188  Sum_probs=81.5

Q ss_pred             hhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccc---cc-----
Q 024797           67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADH---HQ-----  135 (262)
Q Consensus        67 ~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~---~~-----  135 (262)
                      +.-.+..++.+..+....+-++.|.+||.|.++-.+.-   ..-..|+|.|+++++++.|++++.-+...   .+     
T Consensus        34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~  113 (246)
T PF11599_consen   34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELR  113 (246)
T ss_dssp             HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHH
Confidence            33334444444433334556999999999987665432   23346999999999999999987433211   00     


Q ss_pred             -------------------------cccCCCCCeEEEeCcccccccccccCCCCCeeEEEEccccccc--CC---CHHHH
Q 024797          136 -------------------------RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS--WS---TEARA  185 (262)
Q Consensus       136 -------------------------~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~--~~---~~~~~  185 (262)
                                               ...+........+.|+++.............|+|+...-.-++  |.   +....
T Consensus       114 ~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~  193 (246)
T PF11599_consen  114 ELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPV  193 (246)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcH
Confidence                                     1112234467888888773321111123446999986533322  22   34456


Q ss_pred             HHHHHHHHhccCCCcEEEEEeCChHHHHHHHhhhcCCccccc
Q 024797          186 RRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNS  227 (262)
Q Consensus       186 ~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~  227 (262)
                      ..+|..++.+|..+++++++.-........++..+.+++|..
T Consensus       194 ~~ml~~l~~vLp~~sVV~v~~k~~Ki~~~~~r~~~rlKvGkR  235 (246)
T PF11599_consen  194 AQMLNSLAPVLPERSVVAVSDKGRKIPHDRFRRLERLKVGKR  235 (246)
T ss_dssp             HHHHHHHHCCS-TT-EEEEEESSSS---TTS--SEEEEETTE
T ss_pred             HHHHHHHHhhCCCCcEEEEecCCcccccchhHHHHHHhccce
Confidence            889999999996667776644333333334444444455544

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.81  E-value=0.00014  Score=64.33  Aligned_cols=63  Identities=19%  Similarity=0.362  Sum_probs=51.7

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      .+.+..+||+.||+|.++..++ .+.+.|+||++++++++-|++++...+         ..|++|+++-++++
T Consensus       381 l~~~k~llDv~CGTG~iglala-~~~~~ViGvEi~~~aV~dA~~nA~~Ng---------isNa~Fi~gqaE~~  443 (534)
T KOG2187|consen  381 LPADKTLLDVCCGTGTIGLALA-RGVKRVIGVEISPDAVEDAEKNAQING---------ISNATFIVGQAEDL  443 (534)
T ss_pred             CCCCcEEEEEeecCCceehhhh-ccccceeeeecChhhcchhhhcchhcC---------ccceeeeecchhhc
Confidence            4567899999999999988875 466789999999999999999887433         45699999955543

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.80  E-value=0.00012  Score=58.79  Aligned_cols=100  Identities=16%  Similarity=0.152  Sum_probs=72.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeE-EEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR-LICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~-~~~~d~~~~~~~~~~~  161 (262)
                      .++..+||+|+.||.++..+++.+...|+++|..-..+.---+.              ..++. ....++..+.....  
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~--------------d~rV~~~E~tN~r~l~~~~~--  141 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN--------------DPRVIVLERTNVRYLTPEDF--  141 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc--------------CCcEEEEecCChhhCCHHHc--
Confidence            36889999999999999999998888999999987655433221              22333 44455555432211  


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                       .+..|+++|.-++.       ....+|..+..+++++|.++.-+
T Consensus       142 -~~~~d~~v~DvSFI-------SL~~iLp~l~~l~~~~~~~v~Lv  178 (245)
T COG1189         142 -TEKPDLIVIDVSFI-------SLKLILPALLLLLKDGGDLVLLV  178 (245)
T ss_pred             -ccCCCeEEEEeehh-------hHHHHHHHHHHhcCCCceEEEEe
Confidence             23679999988775       34778999999999999887643

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.74  E-value=0.00025  Score=59.46  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHHHHhcc--CCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCe
Q 024797           68 KLNNWIKSVLVQLYAR--RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA  144 (262)
Q Consensus        68 ~~~~~~~~~l~~~~~~--~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v  144 (262)
                      .+..|+..+|......  ..-++||||+|..-.-..+.. ...-+++|+|+++.+++.|++.....       ..+..+|
T Consensus        84 nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N-------~~L~~~I  156 (299)
T PF05971_consen   84 NYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN-------PNLESRI  156 (299)
T ss_dssp             HHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT--------T-TTTE
T ss_pred             HHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc-------cccccce
Confidence            4556777776544322  245899999998754333322 23457999999999999999998731       1456678


Q ss_pred             EEEeCcccccccccccCCCCCeeEEEEcccccc
Q 024797          145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHY  177 (262)
Q Consensus       145 ~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~  177 (262)
                      +++...-...-+.....+.+.||.++|+--++-
T Consensus       157 ~l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~  189 (299)
T PF05971_consen  157 ELRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS  189 (299)
T ss_dssp             EEEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred             EEEEcCCccccchhhhcccceeeEEecCCcccc
Confidence            876654222112222224578999999887763

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.73  E-value=9.1e-06  Score=60.46  Aligned_cols=55  Identities=22%  Similarity=0.316  Sum_probs=48.5

Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE  218 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~  218 (262)
                      .+++.|+|++-.+++|+  +.+.-..+++++++.|||||+|-+.+|+.......+..
T Consensus        44 ~dns~d~iyaeHvlEHl--t~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~   98 (185)
T COG4627          44 EDNSVDAIYAEHVLEHL--TYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQH   98 (185)
T ss_pred             CCcchHHHHHHHHHHHH--hHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhh
Confidence            78999999999999999  77778899999999999999999999998776555544

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.67  E-value=0.00043  Score=51.38  Aligned_cols=88  Identities=20%  Similarity=0.261  Sum_probs=59.8

Q ss_pred             eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccc-----cccCCCHH
Q 024797          109 YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAM-----HYSWSTEA  183 (262)
Q Consensus       109 ~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l-----~~~~~~~~  183 (262)
                      +|+|+|+-+++++.+++++.+.+        ...++++++.+-..+...  . +.+++|+++.+...     +-+....+
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~--------~~~~v~li~~sHe~l~~~--i-~~~~v~~~iFNLGYLPggDk~i~T~~~   69 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAG--------LEDRVTLILDSHENLDEY--I-PEGPVDAAIFNLGYLPGGDKSITTKPE   69 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT---------GSGEEEEES-GGGGGGT-----S--EEEEEEEESB-CTS-TTSB--HH
T ss_pred             CEEEEECHHHHHHHHHHHHHhcC--------CCCcEEEEECCHHHHHhh--C-ccCCcCEEEEECCcCCCCCCCCCcCcH
Confidence            58999999999999999998532        334799999887776531  1 23589999876532     11122345


Q ss_pred             HHHHHHHHHHhccCCCcEEEEEeC
Q 024797          184 RARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       184 ~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .-..+++.+.+.|+|||.+++.+.
T Consensus        70 TTl~Al~~al~lL~~gG~i~iv~Y   93 (140)
T PF06962_consen   70 TTLKALEAALELLKPGGIITIVVY   93 (140)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             HHHHHHHHHHHhhccCCEEEEEEe
Confidence            567889999999999999988774

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=0.00013  Score=54.88  Aligned_cols=116  Identities=17%  Similarity=0.151  Sum_probs=73.8

Q ss_pred             cCCCeEEEecCCC-CcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..+.+|||+|.|- |.-++.++. .....|..+|-++++++-.++......     . ....++..+..+...-..   .
T Consensus        28 ~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~-----~-s~~tsc~vlrw~~~~aqs---q   98 (201)
T KOG3201|consen   28 IRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNM-----A-SSLTSCCVLRWLIWGAQS---Q   98 (201)
T ss_pred             HhHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccc-----c-cccceehhhHHHHhhhHH---H
Confidence            3568899999985 433333332 355579999999999998887654100     0 001112122211111000   0


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      .....||+|++..++..-    +....+++.++..|+|.|..++..|....
T Consensus        99 ~eq~tFDiIlaADClFfd----E~h~sLvdtIk~lL~p~g~Al~fsPRRg~  145 (201)
T KOG3201|consen   99 QEQHTFDIILAADCLFFD----EHHESLVDTIKSLLRPSGRALLFSPRRGQ  145 (201)
T ss_pred             HhhCcccEEEeccchhHH----HHHHHHHHHHHHHhCcccceeEecCcccc
Confidence            135689999999887643    77888999999999999998888886543

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.54  E-value=0.00022  Score=53.46  Aligned_cols=43  Identities=14%  Similarity=0.202  Sum_probs=36.5

Q ss_pred             eEEEecCCCCcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhcc
Q 024797           87 VVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNG  129 (262)
Q Consensus        87 ~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~  129 (262)
                      ++||+|||.|..+..++.... .+++++|+++.+.+.+++++..
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~   44 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKL   44 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHH
Confidence            489999999999888876443 3799999999999999988763

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=97.49  E-value=0.0005  Score=54.46  Aligned_cols=110  Identities=21%  Similarity=0.274  Sum_probs=56.5

Q ss_pred             CCCeEEEecCCCCcchHHHHh-----cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDK-----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      +++.|+|+|.-.|.-+..++.     ...++|+|+|+.-.........          .+....++++++||..+.....
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e----------~hp~~~rI~~i~Gds~d~~~~~  101 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIE----------SHPMSPRITFIQGDSIDPEIVD  101 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGG----------G----TTEEEEES-SSSTHHHH
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHh----------hccccCceEEEECCCCCHHHHH
Confidence            678999999999987776654     2556899999965433222111          1233467999999987654211


Q ss_pred             c---cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          159 V---LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       159 ~---~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .   ......-.+|+... -|.    .+...+.|+.....+++|+++|+....
T Consensus       102 ~v~~~~~~~~~vlVilDs-~H~----~~hvl~eL~~y~plv~~G~Y~IVeDt~  149 (206)
T PF04989_consen  102 QVRELASPPHPVLVILDS-SHT----HEHVLAELEAYAPLVSPGSYLIVEDTI  149 (206)
T ss_dssp             TSGSS----SSEEEEESS---------SSHHHHHHHHHHT--TT-EEEETSHH
T ss_pred             HHHHhhccCCceEEEECC-Ccc----HHHHHHHHHHhCccCCCCCEEEEEecc
Confidence            1   10123344665444 221    144577888899999999999985433

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=97.49  E-value=0.0014  Score=59.46  Aligned_cols=137  Identities=20%  Similarity=0.275  Sum_probs=84.5

Q ss_pred             CccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHh---cC--CCeEEEEeCChhHHHHHHHHhccCccccc
Q 024797           61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK---AK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQ  135 (262)
Q Consensus        61 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~  135 (262)
                      +..+.++.+...+..++   .+.+..+|+|..||+|++.....+   ..  ...++|.|+++.....|+.++--.+.   
T Consensus       166 GEfyTP~~v~~liv~~l---~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi---  239 (489)
T COG0286         166 GEFYTPREVSELIVELL---DPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI---  239 (489)
T ss_pred             CccCChHHHHHHHHHHc---CCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC---
Confidence            45566676655544443   445677999999999998776544   12  24699999999999999988763222   


Q ss_pred             cccCCCCCeEEEeCcccccccccccCCCCCeeEEEEccccc-------------------cc-CCC-HHHHHHHHHHHHh
Q 024797          136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH-------------------YS-WST-EARARRALANVSA  194 (262)
Q Consensus       136 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~-------------------~~-~~~-~~~~~~~l~~~~~  194 (262)
                           ...+....+|-..-|...-....+.||.|+++--+.                   +- +.+ ...-..++..+..
T Consensus       240 -----~~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~  314 (489)
T COG0286         240 -----EGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILY  314 (489)
T ss_pred             -----CccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHH
Confidence                 112344444433332210001236799888764221                   00 111 1122788999999


Q ss_pred             ccCCCcEEEEEeCC
Q 024797          195 LLRPGGTFIGTMPD  208 (262)
Q Consensus       195 ~L~~gG~li~~~~~  208 (262)
                      .|+|||+..+.+|+
T Consensus       315 ~l~~~g~aaivl~~  328 (489)
T COG0286         315 KLKPGGRAAIVLPD  328 (489)
T ss_pred             hcCCCceEEEEecC
Confidence            99999987776664

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.44  E-value=0.0086  Score=47.67  Aligned_cols=117  Identities=14%  Similarity=0.048  Sum_probs=83.1

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      +.+.++.|+||--|.+...+.+. ....+++.|+++..++.|.+.+..        .++...++..++|....-.     
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~--------~~l~~~i~vr~~dgl~~l~-----   81 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK--------NNLSERIDVRLGDGLAVLE-----   81 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh--------cCCcceEEEeccCCccccC-----
Confidence            45667999999999999998874 556799999999999999998873        4556678888888743221     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE  218 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~  218 (262)
                      .+..+|+|+..+.=-      .....++.+-.+.|+.=-++++.-.+....++.+..
T Consensus        82 ~~d~~d~ivIAGMGG------~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~  132 (226)
T COG2384          82 LEDEIDVIVIAGMGG------TLIREILEEGKEKLKGVERLILQPNIHTYELREWLS  132 (226)
T ss_pred             ccCCcCEEEEeCCcH------HHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHH
Confidence            455789998766332      457788888888887544566542222333444333

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.40  E-value=0.00073  Score=57.00  Aligned_cols=91  Identities=22%  Similarity=0.245  Sum_probs=61.4

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      ++.++..+.+.++..++|.--|.|.++..+++. +.++++|+|-++.+++.|++++.          ....++.++.+++
T Consensus         9 l~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~----------~~~~r~~~~~~~F   78 (310)
T PF01795_consen    9 LKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK----------KFDDRFIFIHGNF   78 (310)
T ss_dssp             HHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC----------CCCTTEEEEES-G
T ss_pred             HHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh----------hccceEEEEeccH
Confidence            344555666788899999999999999999874 45799999999999999998876          2356789999988


Q ss_pred             cccccccccC-CCCCeeEEEEcc
Q 024797          152 YEVHLDKVLA-DDAPFDICSCQF  173 (262)
Q Consensus       152 ~~~~~~~~~~-~~~~fD~V~~~~  173 (262)
                      .++...-... ....+|.|+...
T Consensus        79 ~~l~~~l~~~~~~~~~dgiL~DL  101 (310)
T PF01795_consen   79 SNLDEYLKELNGINKVDGILFDL  101 (310)
T ss_dssp             GGHHHHHHHTTTTS-EEEEEEE-
T ss_pred             HHHHHHHHHccCCCccCEEEEcc
Confidence            7664211111 235799998753

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=0.0019  Score=47.96  Aligned_cols=122  Identities=14%  Similarity=0.124  Sum_probs=80.0

Q ss_pred             hhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEE
Q 024797           67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL  146 (262)
Q Consensus        67 ~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~  146 (262)
                      ..-.+.+...+..+..++..+.+|+|+|.|+.....++.+....+|+++++-.+.+++-+.-.        .+......|
T Consensus        55 pAtteQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R--------~g~~k~trf  126 (199)
T KOG4058|consen   55 PATTEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWR--------AGCAKSTRF  126 (199)
T ss_pred             CccHHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHH--------Hhcccchhh
Confidence            333444555666666677789999999999999888776655789999999999888766442        244556778


Q ss_pred             EeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE-eCChH
Q 024797          147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT-MPDAN  210 (262)
Q Consensus       147 ~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~-~~~~~  210 (262)
                      ...|+-..++       ..|.-|++..+-..+       ..+-.++..-+..+..++.+ +|-+.
T Consensus       127 ~RkdlwK~dl-------~dy~~vviFgaes~m-------~dLe~KL~~E~p~nt~vvacRFPLP~  177 (199)
T KOG4058|consen  127 RRKDLWKVDL-------RDYRNVVIFGAESVM-------PDLEDKLRTELPANTRVVACRFPLPT  177 (199)
T ss_pred             hhhhhhhccc-------cccceEEEeehHHHH-------hhhHHHHHhhCcCCCeEEEEecCCCc
Confidence            8888776665       234444444433222       33334566566777776644 45444

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=97.36  E-value=0.002  Score=53.71  Aligned_cols=112  Identities=16%  Similarity=0.130  Sum_probs=65.4

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCcccc---------c-----------------c--
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH---------Q-----------------R--  136 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~---------~-----------------~--  136 (262)
                      ..+||-.|||.|+++..++..+. .+-|=++|--|+-...=.+.--..+|         .                 .  
T Consensus       151 ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~  229 (369)
T KOG2798|consen  151 KIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIH  229 (369)
T ss_pred             CceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCcccc
Confidence            46899999999999999876544 45666777766554432221000000         0                 0  


Q ss_pred             ---ccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          137 ---RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       137 ---~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                         ..+.......-.||+.+.--.  ....+.||+|+..+.+.    +..+....++.+.++|+|||+.+
T Consensus       230 p~~~~~~~~~fsicaGDF~evy~~--s~~~~~~d~VvTcfFID----Ta~NileYi~tI~~iLk~GGvWi  293 (369)
T KOG2798|consen  230 PASSNGNTGSFSICAGDFLEVYGT--SSGAGSYDVVVTCFFID----TAHNILEYIDTIYKILKPGGVWI  293 (369)
T ss_pred             ccccCCCCCCccccccceeEEecC--cCCCCccceEEEEEEee----chHHHHHHHHHHHHhccCCcEEE
Confidence               000000111122343322100  00235799999876554    66889999999999999999866

>PRK10742 putative methyltransferase; Provisional

Probab=97.35  E-value=0.0009  Score=54.52  Aligned_cols=96  Identities=9%  Similarity=-0.064  Sum_probs=65.9

Q ss_pred             HHHHHhccCCC--eEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccC-CCCCeEEEeCccc
Q 024797           76 VLVQLYARRGD--VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLICGDCY  152 (262)
Q Consensus        76 ~l~~~~~~~~~--~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~  152 (262)
                      ++....++++.  +|||+-+|.|+.+..++..++ .|+++|-++.+....+..+....... .... ...+++++++|..
T Consensus        78 l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~-~~~~~~~~ri~l~~~da~  155 (250)
T PRK10742         78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADA-EIGGWLQERLQLIHASSL  155 (250)
T ss_pred             HHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhcc-ccchhhhceEEEEeCcHH
Confidence            33444456666  899999999999999887665 59999999999988888776321100 0001 1245888899976


Q ss_pred             ccccccccCCCCCeeEEEEcccccc
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHY  177 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~  177 (262)
                      ++-..    ....||+|++.-.+.|
T Consensus       156 ~~L~~----~~~~fDVVYlDPMfp~  176 (250)
T PRK10742        156 TALTD----ITPRPQVVYLDPMFPH  176 (250)
T ss_pred             HHHhh----CCCCCcEEEECCCCCC
Confidence            65321    2347999998776654

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=97.27  E-value=0.0018  Score=51.97  Aligned_cols=106  Identities=19%  Similarity=0.218  Sum_probs=72.9

Q ss_pred             HHHHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhH----HHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           77 LVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGS----IEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        77 l~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~----~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      +.+++.+|+.+||-+|+++|........  .+.+.|++++.|...    +..|+++               .|+..+.-|
T Consensus       149 vdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---------------tNiiPIiED  213 (317)
T KOG1596|consen  149 VDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---------------TNIIPIIED  213 (317)
T ss_pred             ccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---------------CCceeeecc
Confidence            3456778999999999999988777654  456679999999764    4444443               246667777


Q ss_pred             ccccc-cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          151 CYEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       151 ~~~~~-~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +.... ++.   .-+-+|+|++.-.-      ++..+.+.-+++..|++||.+++++
T Consensus       214 ArhP~KYRm---lVgmVDvIFaDvaq------pdq~RivaLNA~~FLk~gGhfvisi  261 (317)
T KOG1596|consen  214 ARHPAKYRM---LVGMVDVIFADVAQ------PDQARIVALNAQYFLKNGGHFVISI  261 (317)
T ss_pred             CCCchheee---eeeeEEEEeccCCC------chhhhhhhhhhhhhhccCCeEEEEE
Confidence            75421 111   12467888765432      2445566677899999999999986

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.00088  Score=56.68  Aligned_cols=113  Identities=14%  Similarity=0.158  Sum_probs=63.5

Q ss_pred             CCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           84 RGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ...+|||+|.|+|.-+..+-.  .....++.++.|+..-+...........     .....+..-++.|-..++      
T Consensus       113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-----~~td~r~s~vt~dRl~lp------  181 (484)
T COG5459         113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-----EKTDWRASDVTEDRLSLP------  181 (484)
T ss_pred             CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-----ccCCCCCCccchhccCCC------
Confidence            456799999999954433311  1233577778887554444433321100     001111111222222222      


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ....|++|++..-+-+. ..+..+...++.++..+.|||.|++..+.
T Consensus       182 ~ad~ytl~i~~~eLl~d-~~ek~i~~~ie~lw~l~~~gg~lVivErG  227 (484)
T COG5459         182 AADLYTLAIVLDELLPD-GNEKPIQVNIERLWNLLAPGGHLVIVERG  227 (484)
T ss_pred             ccceeehhhhhhhhccc-cCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence            35667877776655444 23334556889999999999999988653

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=97.23  E-value=0.0015  Score=51.20  Aligned_cols=119  Identities=13%  Similarity=0.155  Sum_probs=68.8

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ..-.+.|||||-|.++..++.. +..-++|.+|-...-++.++++.-+...  .+.+...++.+...++..+- ++. +.
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~--~a~~~~~ni~vlr~namk~l-pn~-f~  135 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRT--SAEGQYPNISVLRTNAMKFL-PNF-FE  135 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcc--ccccccccceeeeccchhhc-cch-hh
Confidence            3457999999999999998754 3435899999999988888887532211  11222344556555543321 111 12


Q ss_pred             CCCeeEEEEcccccccCCCH----HHHHHHHHHHHhccCCCcEEEEEe
Q 024797          163 DAPFDICSCQFAMHYSWSTE----ARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~----~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .++.+-.+..+---|++...    --....+.+..-+|++||.++..+
T Consensus       136 kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit  183 (249)
T KOG3115|consen  136 KGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT  183 (249)
T ss_pred             hcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence            23333333222222221000    001456788889999999987654

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.18  E-value=0.0027  Score=52.86  Aligned_cols=90  Identities=18%  Similarity=0.191  Sum_probs=68.2

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      +...+..+.+.++...+|.--|.|.++..++...  .++++|+|-++.+++.|++++.          ....++.+++.+
T Consensus        12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~----------~~~~r~~~v~~~   81 (314)
T COG0275          12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK----------EFDGRVTLVHGN   81 (314)
T ss_pred             HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh----------ccCCcEEEEeCc
Confidence            4556666778889999999999999999998743  4679999999999999999886          234578899988


Q ss_pred             ccccccccccCCCCCeeEEEEc
Q 024797          151 CYEVHLDKVLADDAPFDICSCQ  172 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~  172 (262)
                      +.++...-.....+++|-|+..
T Consensus        82 F~~l~~~l~~~~i~~vDGiL~D  103 (314)
T COG0275          82 FANLAEALKELGIGKVDGILLD  103 (314)
T ss_pred             HHHHHHHHHhcCCCceeEEEEe
Confidence            7665431111124578888864

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.16  E-value=0.0024  Score=51.97  Aligned_cols=79  Identities=19%  Similarity=0.194  Sum_probs=55.4

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ++.+|+|||||.--++..+... ....|+|+|++..+++.....+..+          ..+..+...|...-+      +
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l----------~~~~~~~v~Dl~~~~------~  168 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL----------GVPHDARVRDLLSDP------P  168 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT----------T-CEEEEEE-TTTSH------T
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh----------CCCcceeEeeeeccC------C
Confidence            5789999999987777766553 3347999999999999999887643          344667777876654      4


Q ss_pred             CCCeeEEEEccccccc
Q 024797          163 DAPFDICSCQFAMHYS  178 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~  178 (262)
                      ....|+.++.=+++.+
T Consensus       169 ~~~~DlaLllK~lp~l  184 (251)
T PF07091_consen  169 KEPADLALLLKTLPCL  184 (251)
T ss_dssp             TSEESEEEEET-HHHH
T ss_pred             CCCcchhhHHHHHHHH
Confidence            6779999987777654

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=97.08  E-value=0.0018  Score=56.53  Aligned_cols=109  Identities=17%  Similarity=0.139  Sum_probs=76.1

Q ss_pred             CCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCC-CeEEEeCccccccccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDCYEVHLDKVL  160 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~  160 (262)
                      .+.+|||.-+|+|.=++.++..  ....|+.-|+|+++++.+++++.-        ++... .+++.+.|+..+-..   
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~--------N~~~~~~~~v~~~DAn~ll~~---  117 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL--------NGLEDERIEVSNMDANVLLYS---  117 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH--------CT-SGCCEEEEES-HHHHHCH---
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh--------ccccCceEEEehhhHHHHhhh---
Confidence            3568999999999888877764  455799999999999999999763        23333 588889998765321   


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                       ....||+|=+.-        --.+..++..+.+.++.||.|.++..|...+
T Consensus       118 -~~~~fD~IDlDP--------fGSp~pfldsA~~~v~~gGll~vTaTD~a~L  160 (377)
T PF02005_consen  118 -RQERFDVIDLDP--------FGSPAPFLDSALQAVKDGGLLCVTATDTAVL  160 (377)
T ss_dssp             -STT-EEEEEE----------SS--HHHHHHHHHHEEEEEEEEEEE--HHHH
T ss_pred             -ccccCCEEEeCC--------CCCccHhHHHHHHHhhcCCEEEEeccccccc
Confidence             367899996432        2345678999999999999999998776654

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.02  E-value=0.031  Score=45.35  Aligned_cols=108  Identities=14%  Similarity=0.049  Sum_probs=63.4

Q ss_pred             cCCCeEEEecCCCCcchHHHH-hcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWD-KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      -.+.+||-+|=.-- .++.++ .....+++.+|+++.+++..++...+.          +.+++....|+.+- +++.  
T Consensus        43 L~gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~----------gl~i~~~~~DlR~~-LP~~--  108 (243)
T PF01861_consen   43 LEGKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEE----------GLPIEAVHYDLRDP-LPEE--  108 (243)
T ss_dssp             STT-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH----------T--EEEE---TTS----TT--
T ss_pred             ccCCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc----------CCceEEEEeccccc-CCHH--
Confidence            36889999996543 222222 245668999999999999999887643          33488899998653 2110  


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCc-EEEEEeCCh
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMPDA  209 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG-~li~~~~~~  209 (262)
                      -.++||++++.-..     +.+-...++.+....|+..| ..++...+.
T Consensus       109 ~~~~fD~f~TDPPy-----T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~  152 (243)
T PF01861_consen  109 LRGKFDVFFTDPPY-----TPEGLKLFLSRGIEALKGEGCAGYFGFTHK  152 (243)
T ss_dssp             TSS-BSEEEE---S-----SHHHHHHHHHHHHHTB-STT-EEEEEE-TT
T ss_pred             HhcCCCEEEeCCCC-----CHHHHHHHHHHHHHHhCCCCceEEEEEecC
Confidence            13899999987633     56788999999999998866 566665443

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.00  E-value=0.0014  Score=58.15  Aligned_cols=98  Identities=16%  Similarity=0.146  Sum_probs=62.2

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCC--eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc-cccccccccC
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIG--YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVHLDKVLA  161 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~~  161 (262)
                      -..|+|+.+|.|.++..+...+.-  .|+-+ ..+..+.....+--               +- ...|. +.++.     
T Consensus       366 iRNVMDMnAg~GGFAAAL~~~~VWVMNVVP~-~~~ntL~vIydRGL---------------IG-~yhDWCE~fsT-----  423 (506)
T PF03141_consen  366 IRNVMDMNAGYGGFAAALIDDPVWVMNVVPV-SGPNTLPVIYDRGL---------------IG-VYHDWCEAFST-----  423 (506)
T ss_pred             eeeeeeecccccHHHHHhccCCceEEEeccc-CCCCcchhhhhccc---------------ch-hccchhhccCC-----
Confidence            347999999999999998654421  23333 23334444333311               11 12232 22332     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      =+.+||+|-+...+... ...-+...+|-++-|+|+|||.+++-
T Consensus       424 YPRTYDLlHA~~lfs~~-~~rC~~~~illEmDRILRP~G~~iiR  466 (506)
T PF03141_consen  424 YPRTYDLLHADGLFSLY-KDRCEMEDILLEMDRILRPGGWVIIR  466 (506)
T ss_pred             CCcchhheehhhhhhhh-cccccHHHHHHHhHhhcCCCceEEEe
Confidence            25789999998877654 23345788999999999999999984

; GO: 0008168 methyltransferase activity

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.98  E-value=0.0019  Score=54.54  Aligned_cols=121  Identities=21%  Similarity=0.209  Sum_probs=77.7

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccC-CCCCeEEEeCcccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ...+|+.|+|.-.|||.++...+. -.+.|+|.||+-.++...+... +.-..|.++.+ ...-+.++.+|..+-+++  
T Consensus       205 mv~pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~-~si~aNFkQYg~~~~fldvl~~D~sn~~~r--  280 (421)
T KOG2671|consen  205 MVKPGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGED-ESIKANFKQYGSSSQFLDVLTADFSNPPLR--  280 (421)
T ss_pred             ccCCCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCC-cchhHhHHHhCCcchhhheeeecccCcchh--
Confidence            457999999999999998877643 3337999999988877432111 01111222222 233467888998887775  


Q ss_pred             cCCCCCeeEEEEcc------------------------cccccCCC-----HHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          160 LADDAPFDICSCQF------------------------AMHYSWST-----EARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       160 ~~~~~~fD~V~~~~------------------------~l~~~~~~-----~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                        ....||+|+|.-                        ...|....     ..-....+.-..++|..||++++=.|
T Consensus       281 --sn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p  355 (421)
T KOG2671|consen  281 --SNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP  355 (421)
T ss_pred             --hcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence              467899999852                        11122000     11234567778899999999998665

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=96.93  E-value=0.01  Score=50.81  Aligned_cols=121  Identities=21%  Similarity=0.205  Sum_probs=74.1

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhc---C--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKA---K--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~---~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      +...|+.+|||+++.+|.-+..+++.   .  .+.|++=|.+..-+...........         ..+..+...|+..+
T Consensus       151 L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~---------~~~~~v~~~~~~~~  221 (375)
T KOG2198|consen  151 LGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP---------SPNLLVTNHDASLF  221 (375)
T ss_pred             cccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC---------Ccceeeecccceec
Confidence            34579999999999999998887763   1  3479999999875555444332111         22344444444433


Q ss_pred             cccc---c-cCCCCCeeEEEEcc------ccccc---CCC----------HHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          155 HLDK---V-LADDAPFDICSCQF------AMHYS---WST----------EARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       155 ~~~~---~-~~~~~~fD~V~~~~------~l~~~---~~~----------~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      +-..   . ......||-|+|.-      .+.+.   |..          ..-+..++.+..+.||+||.++-++.+.
T Consensus       222 p~~~~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  222 PNIYLKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             cccccccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence            3210   0 00235789998742      11100   000          1235678999999999999999988643

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=96.92  E-value=0.0069  Score=50.27  Aligned_cols=120  Identities=18%  Similarity=0.113  Sum_probs=83.6

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      +..++++|-||-|.|......+++ ..+.+.-+|+.+..++..++..+......     -..+|.+.-||...+-- .. 
T Consensus       119 ~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy-----~~~~v~l~iGDG~~fl~-~~-  191 (337)
T KOG1562|consen  119 HPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGY-----EGKKVKLLIGDGFLFLE-DL-  191 (337)
T ss_pred             CCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhccc-----CCCceEEEeccHHHHHH-Hh-
Confidence            346789999999999998887765 45579999999999999998877543321     13568888888655421 11 


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                       ..++||+|+....=.-........+..+.-+.+.||++|+++..-.+.
T Consensus       192 -~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~  239 (337)
T KOG1562|consen  192 -KENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECM  239 (337)
T ss_pred             -ccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEeccee
Confidence             468999999765322211111235667888999999999987755333

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.87  E-value=0.0058  Score=52.28  Aligned_cols=94  Identities=18%  Similarity=0.154  Sum_probs=64.5

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc-cccccccc
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD-CYEVHLDK  158 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d-~~~~~~~~  158 (262)
                      ...|+++|+-+|+|. |.++..+++....+|+++|.|++-++.|++.-.               ..++... ......  
T Consensus       163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA---------------d~~i~~~~~~~~~~--  225 (339)
T COG1064         163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA---------------DHVINSSDSDALEA--  225 (339)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC---------------cEEEEcCCchhhHH--
Confidence            457899999999982 455666666445789999999999999998654               2333332 111111  


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                         -.+.||+|+..-. .          ..+....+.|++||.+++.
T Consensus       226 ---~~~~~d~ii~tv~-~----------~~~~~~l~~l~~~G~~v~v  258 (339)
T COG1064         226 ---VKEIADAIIDTVG-P----------ATLEPSLKALRRGGTLVLV  258 (339)
T ss_pred             ---hHhhCcEEEECCC-h----------hhHHHHHHHHhcCCEEEEE
Confidence               1234999987554 3          3457788899999998764

>PRK11524 putative methyltransferase; Provisional

Probab=96.85  E-value=0.0034  Score=52.91  Aligned_cols=49  Identities=24%  Similarity=0.212  Sum_probs=40.3

Q ss_pred             HHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhc
Q 024797           79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      .....+|+.|||.-||+|..+.... ....+++|+|++++-++.|++++.
T Consensus       203 ~~~S~~GD~VLDPF~GSGTT~~AA~-~lgR~~IG~Ei~~~Y~~~a~~Rl~  251 (284)
T PRK11524        203 LASSNPGDIVLDPFAGSFTTGAVAK-ASGRKFIGIEINSEYIKMGLRRLD  251 (284)
T ss_pred             HHhCCCCCEEEECCCCCcHHHHHHH-HcCCCEEEEeCCHHHHHHHHHHHH
Confidence            3445799999999999997666543 445579999999999999999975

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.82  E-value=0.0034  Score=50.64  Aligned_cols=51  Identities=27%  Similarity=0.423  Sum_probs=35.8

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHH
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT  125 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~  125 (262)
                      ++.++ .....+++.|||.-||+|..+.... ....+++|+|++++.++.|++
T Consensus       181 ~~~lI-~~~t~~gdiVlDpF~GSGTT~~aa~-~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  181 IERLI-KASTNPGDIVLDPFAGSGTTAVAAE-ELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             HHHHH-HHHS-TT-EEEETT-TTTHHHHHHH-HTT-EEEEEESSHHHHHHHHH
T ss_pred             HHHHH-HhhhccceeeehhhhccChHHHHHH-HcCCeEEEEeCCHHHHHHhcC
Confidence            33343 3446789999999999997666554 444579999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=96.68  E-value=0.02  Score=49.33  Aligned_cols=118  Identities=14%  Similarity=0.136  Sum_probs=59.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc----------CCC-------eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeE
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA----------KIG-------YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR  145 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~----------~~~-------~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~  145 (262)
                      ...-+|+|+||..|..+..++..          ...       .|+--|+-..=....-+.+........  .....-+.
T Consensus        15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~--~~~~~f~~   92 (334)
T PF03492_consen   15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLK--KFRNYFVS   92 (334)
T ss_dssp             TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHH--HTTSEEEE
T ss_pred             CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccC--CCceEEEE
Confidence            34558999999999988765431          111       466667543322211111110000000  00001122


Q ss_pred             EEeCcccccccccccCCCCCeeEEEEcccccccCC------C-----------------------------HHHHHHHHH
Q 024797          146 LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS------T-----------------------------EARARRALA  190 (262)
Q Consensus       146 ~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~------~-----------------------------~~~~~~~l~  190 (262)
                      -+-+.+..-     ++|+++.|++++..++||+-.      +                             ..|...+|+
T Consensus        93 gvpgSFy~r-----LfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~  167 (334)
T PF03492_consen   93 GVPGSFYGR-----LFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLK  167 (334)
T ss_dssp             EEES-TTS-------S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCchhhhc-----cCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHH
Confidence            233444332     238999999999999988721      0                             135567788


Q ss_pred             HHHhccCCCcEEEEEeC
Q 024797          191 NVSALLRPGGTFIGTMP  207 (262)
Q Consensus       191 ~~~~~L~~gG~li~~~~  207 (262)
                      .-.+=|+|||++++++.
T Consensus       168 ~Ra~ELv~GG~mvl~~~  184 (334)
T PF03492_consen  168 ARAEELVPGGRMVLTFL  184 (334)
T ss_dssp             HHHHHEEEEEEEEEEEE
T ss_pred             HhhheeccCcEEEEEEe
Confidence            88888999999998864

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.66  E-value=0.0049  Score=51.68  Aligned_cols=72  Identities=22%  Similarity=0.333  Sum_probs=54.5

Q ss_pred             eEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCe
Q 024797           87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF  166 (262)
Q Consensus        87 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f  166 (262)
                      +++|+.||.|.+...+...+...+.++|+++.+++..+.++..               ..+++|+.++...+.   .+.+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~---------------~~~~~Di~~~~~~~~---~~~~   63 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN---------------KLIEGDITKIDEKDF---IPDI   63 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC---------------CCccCccccCchhhc---CCCC
Confidence            6999999999998888666776789999999999998887651               256778777654211   3569


Q ss_pred             eEEEEccccc
Q 024797          167 DICSCQFAMH  176 (262)
Q Consensus       167 D~V~~~~~l~  176 (262)
                      |+++.....+
T Consensus        64 D~l~~gpPCq   73 (275)
T cd00315          64 DLLTGGFPCQ   73 (275)
T ss_pred             CEEEeCCCCh
Confidence            9999876443

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=96.65  E-value=0.012  Score=48.21  Aligned_cols=115  Identities=15%  Similarity=-0.057  Sum_probs=67.5

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      ..+||++|+|+|-.++.++......|+..|+..........+... +   .....++..+.....+....+..... .+.
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~-~---~~l~~~g~~v~v~~L~Wg~~~~~~~~-~~~  161 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKN-N---IALNQLGGSVIVAILVWGNALDVSFR-LPN  161 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhh-h---hhhhhcCCceeEEEEecCCcccHhhc-cCC
Confidence            457999999999666655555666888888866443333221110 0   00112222344444443332221111 122


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .||+|++.-++.+-    .....++..++..|..+|.+++..+-
T Consensus       162 ~~DlilasDvvy~~----~~~e~Lv~tla~ll~~~~~i~l~~~l  201 (248)
T KOG2793|consen  162 PFDLILASDVVYEE----ESFEGLVKTLAFLLAKDGTIFLAYPL  201 (248)
T ss_pred             cccEEEEeeeeecC----CcchhHHHHHHHHHhcCCeEEEEEec
Confidence            29999998887643    55677788888889899977666653

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=96.59  E-value=0.047  Score=45.37  Aligned_cols=114  Identities=14%  Similarity=-0.003  Sum_probs=73.7

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc----
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL----  160 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~----  160 (262)
                      ...|+.+|||-=.-...+.......++=+|. +++++.-++.+.+.+.      ....+..++.+|+. ..+...+    
T Consensus        82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~------~~~~~~~~v~~Dl~-~~w~~~L~~~g  153 (260)
T TIGR00027        82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGA------EPPAHRRAVPVDLR-QDWPAALAAAG  153 (260)
T ss_pred             CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCC------CCCCceEEeccCch-hhHHHHHHhCC
Confidence            4579999998743333331112234666665 3355555555653221      12456788888886 2221111    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +....--++++-+++.|+  +.+...++++.+.+...||+.+++...+
T Consensus       154 fd~~~ptl~i~EGvl~YL--~~~~v~~ll~~i~~~~~~gs~l~~d~~~  199 (260)
T TIGR00027       154 FDPTAPTAWLWEGLLMYL--TEEAVDALLAFIAELSAPGSRLAFDYVR  199 (260)
T ss_pred             CCCCCCeeeeecchhhcC--CHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            123445688888899998  8889999999999999999999998654

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PHA01634 hypothetical protein

Probab=96.50  E-value=0.017  Score=41.87  Aligned_cols=45  Identities=7%  Similarity=-0.000  Sum_probs=40.8

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      .+.+|+|||++-|..++.++..+.+.|++++.++...+..++...
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k   72 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCA   72 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhh
Confidence            688999999999998888887888899999999999999988765

>PRK13699 putative methylase; Provisional

Probab=96.42  E-value=0.011  Score=48.12  Aligned_cols=48  Identities=21%  Similarity=0.328  Sum_probs=39.3

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhcc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG  129 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~  129 (262)
                      ...+++.|||.-||+|..+....+ ...+++|+|++++..+.+.+++..
T Consensus       160 ~s~~g~~vlDpf~Gsgtt~~aa~~-~~r~~~g~e~~~~y~~~~~~r~~~  207 (227)
T PRK13699        160 FTHPNAIVLDPFAGSGSTCVAALQ-SGRRYIGIELLEQYHRAGQQRLAA  207 (227)
T ss_pred             hCCCCCEEEeCCCCCCHHHHHHHH-cCCCEEEEecCHHHHHHHHHHHHH
Confidence            356899999999999977665543 344799999999999999998763

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=96.41  E-value=0.0049  Score=53.79  Aligned_cols=61  Identities=18%  Similarity=0.137  Sum_probs=47.7

Q ss_pred             eEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        87 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      .|||+|.|+|.++...++.+...|++++.=..|++.|++...+        ++..+++.++..--.+..
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~k--------ng~SdkI~vInkrStev~  129 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHK--------NGMSDKINVINKRSTEVK  129 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhc--------CCCccceeeeccccceee
Confidence            6999999999888877777777899999999999999998763        344566666665444443

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.27  Score=40.06  Aligned_cols=111  Identities=17%  Similarity=0.194  Sum_probs=73.8

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-----CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      .+.+.+|+|+|+..-+..++..     ...+++.+|+|...++...+.+..        .-....+.-+++|.+. ++..
T Consensus        78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~--------~y~~l~v~~l~~~~~~-~La~  148 (321)
T COG4301          78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILR--------EYPGLEVNALCGDYEL-ALAE  148 (321)
T ss_pred             CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHH--------hCCCCeEeehhhhHHH-HHhc
Confidence            4679999999998777766552     234799999999988876554431        1112335566777532 1111


Q ss_pred             ccCCCCCeeE-EEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          159 VLADDAPFDI-CSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       159 ~~~~~~~fD~-V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +  +...--+ ++...++-.+  ++.+...++..+...|+||-.+++.+.
T Consensus       149 ~--~~~~~Rl~~flGStlGN~--tp~e~~~Fl~~l~~a~~pGd~~LlGvD  194 (321)
T COG4301         149 L--PRGGRRLFVFLGSTLGNL--TPGECAVFLTQLRGALRPGDYFLLGVD  194 (321)
T ss_pred             c--cCCCeEEEEEecccccCC--ChHHHHHHHHHHHhcCCCcceEEEecc
Confidence            1  2222233 3334466666  788899999999999999999998764

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=96.36  E-value=0.072  Score=46.60  Aligned_cols=47  Identities=15%  Similarity=0.224  Sum_probs=36.1

Q ss_pred             CCCCCeeEEEEcccccccCCC----------------------------------HHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 ADDAPFDICSCQFAMHYSWST----------------------------------EARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~----------------------------------~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +|.++.+++++..++||+-.-                                  ..|...+|+.-++-|.|||.+++++
T Consensus       158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~  237 (386)
T PLN02668        158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC  237 (386)
T ss_pred             cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence            488999999999999887210                                  1235567777788899999999986


Q ss_pred             C
Q 024797          207 P  207 (262)
Q Consensus       207 ~  207 (262)
                      .
T Consensus       238 ~  238 (386)
T PLN02668        238 L  238 (386)
T ss_pred             e
Confidence            3

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.28  E-value=0.0044  Score=50.19  Aligned_cols=96  Identities=17%  Similarity=0.126  Sum_probs=50.8

Q ss_pred             HHHHhccCC--CeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           77 LVQLYARRG--DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        77 l~~~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      +.....+++  .+|||+-+|-|+.+..++..+. +|++++-|+-+....+..+.............-.+++++.+|..++
T Consensus        66 ~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~  144 (234)
T PF04445_consen   66 AKAVGLKPGMRPSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY  144 (234)
T ss_dssp             HHHTT-BTTB---EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH
T ss_pred             HHHhCCCCCCCCEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH
Confidence            333334554  4899999999999988775544 7999999998777666544321100000001124689999998775


Q ss_pred             ccccccCCCCCeeEEEEcccccc
Q 024797          155 HLDKVLADDAPFDICSCQFAMHY  177 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~  177 (262)
                      -.    .++++||+|++.-.+.+
T Consensus       145 L~----~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  145 LR----QPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             CC----CHSS--SEEEE--S---
T ss_pred             Hh----hcCCCCCEEEECCCCCC
Confidence            32    15789999998765543

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=96.26  E-value=0.029  Score=43.85  Aligned_cols=111  Identities=19%  Similarity=0.126  Sum_probs=62.7

Q ss_pred             ccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHH----H--HHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSI----E--DCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~----~--~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      .+++.+|+|+=-|.|.++.-+..  ...+.|+++=..+...    +  ..+....+         ....|++.+-.+...
T Consensus        46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e---------~~~aN~e~~~~~~~A  116 (238)
T COG4798          46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAARE---------PVYANVEVIGKPLVA  116 (238)
T ss_pred             cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhh---------hhhhhhhhhCCcccc
Confidence            47899999999999998887754  3555777764443211    0  00111110         112234444444443


Q ss_pred             cccccccCCCCCeeEEEEccccccc---CCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYS---WSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~---~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +.      +....|++......|-+   .-......++...+++.|||||.+++..+
T Consensus       117 ~~------~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH  167 (238)
T COG4798         117 LG------APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDH  167 (238)
T ss_pred             cC------CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEec
Confidence            33      23444555442211111   00134568899999999999999988653

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=96.21  E-value=0.0026  Score=44.91  Aligned_cols=42  Identities=24%  Similarity=0.418  Sum_probs=31.8

Q ss_pred             CeeEEEEccccccc--CCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          165 PFDICSCQFAMHYS--WSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       165 ~fD~V~~~~~l~~~--~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +||+|+|..+..++  --.++-...+++.+++.|+|||.||+.-
T Consensus         1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEp   44 (110)
T PF06859_consen    1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEP   44 (110)
T ss_dssp             -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred             CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeC
Confidence            48999998875433  1244567889999999999999999974

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.20  E-value=0.036  Score=44.53  Aligned_cols=86  Identities=14%  Similarity=0.226  Sum_probs=51.4

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      +..++||||.|.--.-..+-.+.. -+++|.|+++.+++.|+..+...       .++...++.....-..--+....-.
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N-------~~l~~~I~lr~qk~~~~if~giig~  150 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISAN-------PGLERAIRLRRQKDSDAIFNGIIGK  150 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcC-------cchhhheeEEeccCccccccccccc
Confidence            456899999886422111111222 25899999999999999887521       1233345544332222112222224


Q ss_pred             CCCeeEEEEccccc
Q 024797          163 DAPFDICSCQFAMH  176 (262)
Q Consensus       163 ~~~fD~V~~~~~l~  176 (262)
                      .+.||.++|+--+|
T Consensus       151 nE~yd~tlCNPPFh  164 (292)
T COG3129         151 NERYDATLCNPPFH  164 (292)
T ss_pred             cceeeeEecCCCcc
Confidence            68899999998887

>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species

Probab=96.20  E-value=0.0038  Score=47.10  Aligned_cols=45  Identities=22%  Similarity=0.368  Sum_probs=35.4

Q ss_pred             CCCeeEEEEcccccccC-------CCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          163 DAPFDICSCQFAMHYSW-------STEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~-------~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .++||.+.|..+++|+-       -++.--.+.+.++.++||+||.|++.+|
T Consensus        61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vP  112 (177)
T PF03269_consen   61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVP  112 (177)
T ss_pred             hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEee
Confidence            57899999999998871       1122235677899999999999999987

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.10  E-value=0.024  Score=48.61  Aligned_cols=107  Identities=19%  Similarity=0.123  Sum_probs=76.5

Q ss_pred             CCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ..+|||.-||+|.=++.++.. +..+++.-|+|+++++.++++...         +.+.+...+..|+..+-..    ..
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~---------N~~~~~~v~n~DAN~lm~~----~~  119 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRL---------NSGEDAEVINKDANALLHE----LH  119 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHh---------cCcccceeecchHHHHHHh----cC
Confidence            679999999999888777653 343899999999999999998863         1133355555777665331    23


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      ..||+|=+.-        --.+.-++..+.+.++.||++.++..|...+
T Consensus       120 ~~fd~IDiDP--------FGSPaPFlDaA~~s~~~~G~l~vTATD~a~L  160 (380)
T COG1867         120 RAFDVIDIDP--------FGSPAPFLDAALRSVRRGGLLCVTATDTAPL  160 (380)
T ss_pred             CCccEEecCC--------CCCCchHHHHHHHHhhcCCEEEEEecccccc
Confidence            7789885322        1234567888888889999999987655433

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.07  E-value=0.0036  Score=55.41  Aligned_cols=112  Identities=15%  Similarity=0.150  Sum_probs=81.2

Q ss_pred             CCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ++.+|||.=|++|.-++.++..  +...+++-|.++.+++..+++..-        .+....++....|+..+-..... 
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~--------N~v~~ive~~~~DA~~lM~~~~~-  179 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVEL--------NGVEDIVEPHHSDANVLMYEHPM-  179 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhh--------cCchhhcccccchHHHHHHhccc-
Confidence            5678999999999988888763  556799999999999998887762        22334466677776554332111 


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      ....||+|=+.-        -.....+|+.+.+.++.||.|.++..|...+
T Consensus       180 ~~~~FDvIDLDP--------yGs~s~FLDsAvqav~~gGLL~vT~TD~aVL  222 (525)
T KOG1253|consen  180 VAKFFDVIDLDP--------YGSPSPFLDSAVQAVRDGGLLCVTCTDMAVL  222 (525)
T ss_pred             cccccceEecCC--------CCCccHHHHHHHHHhhcCCEEEEEecchHhh
Confidence            347899985432        2334668899999999999999998766544

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.04  E-value=0.044  Score=47.65  Aligned_cols=98  Identities=19%  Similarity=0.205  Sum_probs=62.4

Q ss_pred             cCCCeEEEecCCC-CcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc-cccccc
Q 024797           83 RRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKV  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~  159 (262)
                      .++.+|+-+|||+ |.++..+++ .+...|+.+|.+++-++.|++...               .........+ ......
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g---------------~~~~~~~~~~~~~~~~~  231 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGG---------------ADVVVNPSEDDAGAEIL  231 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCC---------------CeEeecCccccHHHHHH
Confidence            3455899999998 655555555 466789999999999999998654               1111111110 000000


Q ss_pred             cCCC-CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          160 LADD-APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       160 ~~~~-~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .... ..+|+++-....          ...+..+.+.+++||.+++.
T Consensus       232 ~~t~g~g~D~vie~~G~----------~~~~~~ai~~~r~gG~v~~v  268 (350)
T COG1063         232 ELTGGRGADVVIEAVGS----------PPALDQALEALRPGGTVVVV  268 (350)
T ss_pred             HHhCCCCCCEEEECCCC----------HHHHHHHHHHhcCCCEEEEE
Confidence            0012 369999865542          23778899999999998654

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.01  E-value=0.036  Score=50.41  Aligned_cols=103  Identities=16%  Similarity=0.101  Sum_probs=62.8

Q ss_pred             cCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc--------
Q 024797           83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--------  153 (262)
Q Consensus        83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~--------  153 (262)
                      .++.+|+-+|||. |......++.....|+++|.+++.++.+++.-.                ++...|..+        
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA----------------~~v~i~~~e~~~~~~gy  226 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA----------------EFLELDFEEEGGSGDGY  226 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC----------------eEEEeccccccccccch
Confidence            3689999999997 555555555433479999999999999887322                211111100        


Q ss_pred             ---ccc------ccccCC-CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          154 ---VHL------DKVLAD-DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       154 ---~~~------~~~~~~-~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                         +.-      .....+ -..+|+|+.......    ...+..+.++..+.+||||.++..
T Consensus       227 a~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg----~~aP~lit~~~v~~mkpGgvIVdv  284 (509)
T PRK09424        227 AKVMSEEFIKAEMALFAEQAKEVDIIITTALIPG----KPAPKLITAEMVASMKPGSVIVDL  284 (509)
T ss_pred             hhhcchhHHHHHHHHHHhccCCCCEEEECCCCCc----ccCcchHHHHHHHhcCCCCEEEEE
Confidence               000      000001 146899997665431    122333458999999999997654

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=95.85  E-value=0.052  Score=46.98  Aligned_cols=129  Identities=14%  Similarity=0.092  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhcc--CccccccccCCCCCeE
Q 024797           69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNG--DADHHQRRKKFSFPAR  145 (262)
Q Consensus        69 ~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~--~~~~~~~~~~~~~~v~  145 (262)
                      .-+.+.++..++...+++...|+|+|-|......+. .+...-+|+++....-+.|......  ...++.-  +-...+.
T Consensus       177 ~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fG--k~~~~~~  254 (419)
T KOG3924|consen  177 QLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFG--KKPNKIE  254 (419)
T ss_pred             hHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhC--CCcCcee
Confidence            334566777888889999999999999998887765 4555678888876655554432211  0000000  0023366


Q ss_pred             EEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          146 LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       146 ~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .+++++........+  ....++|+++++..    +++. ..-+.++..-+++|-+++-.-
T Consensus       255 ~i~gsf~~~~~v~eI--~~eatvi~vNN~~F----dp~L-~lr~~eil~~ck~gtrIiS~~  308 (419)
T KOG3924|consen  255 TIHGSFLDPKRVTEI--QTEATVIFVNNVAF----DPEL-KLRSKEILQKCKDGTRIISSK  308 (419)
T ss_pred             ecccccCCHHHHHHH--hhcceEEEEecccC----CHHH-HHhhHHHHhhCCCcceEeccc
Confidence            778877654432222  34568888887664    3333 333458999999999988653

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.74  E-value=0.023  Score=39.93  Aligned_cols=33  Identities=24%  Similarity=0.271  Sum_probs=22.3

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCCh
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE  117 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~  117 (262)
                      +....+|+|||+|-+.--|...+. .=.|+|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence            456799999999955554433333 467888744

; GO: 0008168 methyltransferase activity

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=95.68  E-value=0.067  Score=47.10  Aligned_cols=109  Identities=23%  Similarity=0.211  Sum_probs=65.7

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc-cc--
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VH--  155 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~--  155 (262)
                      ...++.+||..|||. |..+..+++... ..++++|.+++.++.+++...               +.++...-.+ +.  
T Consensus       181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~---------------~~vi~~~~~~~~~~~  245 (386)
T cd08283         181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG---------------AETINFEEVDDVVEA  245 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---------------cEEEcCCcchHHHHH
Confidence            345788999999987 777777766433 369999999999998887532               1111111110 00  


Q ss_pred             cccccCCCCCeeEEEEcccc-----------cccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 LDKVLADDAPFDICSCQFAM-----------HYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l-----------~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ..... ....+|+|+-.-.-           .|.+....+....+.++.+.|+++|.++..
T Consensus       246 l~~~~-~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  305 (386)
T cd08283         246 LRELT-GGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSII  305 (386)
T ss_pred             HHHHc-CCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEE
Confidence            00011 23468988764311           111112233456788899999999998764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=95.68  E-value=0.0079  Score=49.74  Aligned_cols=115  Identities=14%  Similarity=0.023  Sum_probs=60.9

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccc-cccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH-HQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...+++|||+|||.|.........+...+...|.|.+.++.-.--....... .........-......+..+..+.   
T Consensus       114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~---  190 (282)
T KOG2920|consen  114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFN---  190 (282)
T ss_pred             EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhh---
Confidence            4578999999999998888776666567889999887763211100000000 000000000011112211111110   


Q ss_pred             CCCC--CeeEEEEcccccccCCCHHHHHHH-HHHHHhccCCCcEEEE
Q 024797          161 ADDA--PFDICSCQFAMHYSWSTEARARRA-LANVSALLRPGGTFIG  204 (262)
Q Consensus       161 ~~~~--~fD~V~~~~~l~~~~~~~~~~~~~-l~~~~~~L~~gG~li~  204 (262)
                       ..+  .||+|.+.-.+...    .....+ .......++++|.+++
T Consensus       191 -~t~~~~ydlIlsSetiy~~----~~~~~~~~~~r~~l~~~D~~~~~  232 (282)
T KOG2920|consen  191 -HTERTHYDLILSSETIYSI----DSLAVLYLLHRPCLLKTDGVFYV  232 (282)
T ss_pred             -hccccchhhhhhhhhhhCc----chhhhhHhhhhhhcCCccchhhh
Confidence             123  78888877766432    333444 6677778888998765

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.51  E-value=0.1  Score=44.11  Aligned_cols=101  Identities=18%  Similarity=0.118  Sum_probs=62.9

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc---ccccc
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD---CYEVH  155 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d---~~~~~  155 (262)
                      ..+.+.+||-+|+|+ |..+..+++ -+..+|+.+|+++.-++.|++ +.-             .+......   ...+.
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga-------------~~~~~~~~~~~~~~~~  231 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGA-------------TVTDPSSHKSSPQELA  231 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCC-------------eEEeeccccccHHHHH
Confidence            346899999999998 555555555 366789999999999999998 431             11111111   01100


Q ss_pred             --cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          156 --LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       156 --~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                        ..... ....+|+.+-...++          ..++.....++.||.+++..
T Consensus       232 ~~v~~~~-g~~~~d~~~dCsG~~----------~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  232 ELVEKAL-GKKQPDVTFDCSGAE----------VTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             HHHHhhc-cccCCCeEEEccCch----------HHHHHHHHHhccCCEEEEec
Confidence              00111 234588887655443          34566678899999977654

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.42  E-value=0.09  Score=45.41  Aligned_cols=97  Identities=14%  Similarity=0.092  Sum_probs=57.0

Q ss_pred             ccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++++||-.|||. |..+..+++. +...++++|.+++.++.+++.-..            .-+.....++.+...   
T Consensus       167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~------------~vi~~~~~~~~~~~~---  231 (343)
T PRK09880        167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD------------KLVNPQNDDLDHYKA---  231 (343)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc------------EEecCCcccHHHHhc---
Confidence            34688999999864 4455555554 344699999999999888763220            000000111111111   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        ..+.+|+|+-...-          ...+..+.+.|++||.++..
T Consensus       232 --~~g~~D~vid~~G~----------~~~~~~~~~~l~~~G~iv~~  265 (343)
T PRK09880        232 --EKGYFDVSFEVSGH----------PSSINTCLEVTRAKGVMVQV  265 (343)
T ss_pred             --cCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence              22458988754321          13456778889999998764

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=95.38  E-value=0.081  Score=47.52  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=71.7

Q ss_pred             CeEEEecCCCCcchHHHHhc-----CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           86 DVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..|+-+|+|.|-+....++.     ..-++++++-++.++-....+--         .....+|+++.+|+..+..    
T Consensus       369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~---------~~W~~~Vtii~~DMR~w~a----  435 (649)
T KOG0822|consen  369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF---------ECWDNRVTIISSDMRKWNA----  435 (649)
T ss_pred             EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch---------hhhcCeeEEEeccccccCC----
Confidence            46888899999876655441     23368999999998877765321         2345679999999999873    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                       +..+.|++++-. +..+ .+.+.-.+-|.-+.+.|||+|+.|=
T Consensus       436 -p~eq~DI~VSEL-LGSF-GDNELSPECLDG~q~fLkpdgIsIP  476 (649)
T KOG0822|consen  436 -PREQADIIVSEL-LGSF-GDNELSPECLDGAQKFLKPDGISIP  476 (649)
T ss_pred             -chhhccchHHHh-hccc-cCccCCHHHHHHHHhhcCCCceEcc
Confidence             357889987522 1111 1223445678899999999998763

>PRK11524 putative methyltransferase; Provisional

Probab=95.08  E-value=0.092  Score=44.26  Aligned_cols=61  Identities=13%  Similarity=0.166  Sum_probs=39.7

Q ss_pred             eEEEeCcccccccccccCCCCCeeEEEEccccc----c--c---CCC---HHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMH----Y--S---WST---EARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       144 v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~----~--~---~~~---~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ..++++|+.+..-  . .++++||+|+++--..    +  .   +..   ..-...++.++.++|||||.+++...
T Consensus         9 ~~i~~gD~~~~l~--~-l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~   81 (284)
T PRK11524          9 KTIIHGDALTELK--K-IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNS   81 (284)
T ss_pred             CEEEeccHHHHHH--h-cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            5678899876421  0 1578999999854221    0  0   000   01235789999999999999988644

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.98  E-value=0.043  Score=44.01  Aligned_cols=102  Identities=19%  Similarity=0.196  Sum_probs=66.8

Q ss_pred             CCeEEEecCCCCcchHHHHhc-----C-----CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           85 GDVVLDLACGKGGDLIKWDKA-----K-----IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~-----~-----~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      -.+++|+.+.+|..+..+.+.     .     ...+++||+-+ |       .+            ...|.-+++|+...
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-M-------aP------------I~GV~qlq~DIT~~  101 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-M-------AP------------IEGVIQLQGDITSA  101 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-C-------Cc------------cCceEEeecccCCH
Confidence            468999999999988877552     1     11399999865 1       11            33477889998764


Q ss_pred             ccccc---cCCCCCeeEEEEccc-----ccccCC---CHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          155 HLDKV---LADDAPFDICSCQFA-----MHYSWS---TEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       155 ~~~~~---~~~~~~fD~V~~~~~-----l~~~~~---~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .-.+.   .+...+.|+|+|.++     +|-+ +   -.+.+..+|.-...+|+|||.++..+.
T Consensus       102 stae~Ii~hfggekAdlVvcDGAPDvTGlHd~-DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif  164 (294)
T KOG1099|consen  102 STAEAIIEHFGGEKADLVVCDGAPDVTGLHDL-DEYVQAQLLLAALNIATCVLKPGGSFVAKIF  164 (294)
T ss_pred             hHHHHHHHHhCCCCccEEEeCCCCCccccccH-HHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence            32110   124568999999873     4432 0   112234556677889999999987653

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=94.95  E-value=0.018  Score=47.97  Aligned_cols=96  Identities=18%  Similarity=0.162  Sum_probs=66.0

Q ss_pred             CCCeEEEecCCCCcchH-HHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGKGGDLI-KWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~-~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .+..|+|+-+|-|.++. ++...+.+.|+++|.++.+++..++.+..        ++..++...+.+|-....      +
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~--------N~V~~r~~i~~gd~R~~~------~  259 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEA--------NNVMDRCRITEGDNRNPK------P  259 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHh--------cchHHHHHhhhccccccC------c
Confidence            56899999999999999 67677888899999999999999987762        222344455566654443      3


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcE
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT  201 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~  201 (262)
                      ....|-|....    +    +..++-+..+-++|+|.|-
T Consensus       260 ~~~AdrVnLGL----l----PSse~~W~~A~k~Lk~egg  290 (351)
T KOG1227|consen  260 RLRADRVNLGL----L----PSSEQGWPTAIKALKPEGG  290 (351)
T ss_pred             cccchheeecc----c----cccccchHHHHHHhhhcCC
Confidence            56667765432    1    2234455566777887544

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=94.92  E-value=0.14  Score=44.10  Aligned_cols=64  Identities=9%  Similarity=0.026  Sum_probs=50.3

Q ss_pred             hhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc---------CCCeEEEEeCChhHHHHHHHHhccC
Q 024797           67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---------KIGYYVGIDIAEGSIEDCRTRYNGD  130 (262)
Q Consensus        67 ~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~---------~~~~v~gvD~s~~~~~~a~~~~~~~  130 (262)
                      ..+..|+..++.+...+.+..++|+|.|.|.+...+++.         ...++.-|++|++..+.-++.+...
T Consensus        60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~  132 (370)
T COG1565          60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT  132 (370)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence            455667777777776666778999999999988877652         2457999999999999988888743

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=94.77  E-value=0.068  Score=44.18  Aligned_cols=60  Identities=18%  Similarity=0.182  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHh-ccCCCeEEEecCCCCcchHHHHhc---------CCCeEEEEeCChhHHHHHHHHhcc
Q 024797           70 NNWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKA---------KIGYYVGIDIAEGSIEDCRTRYNG  129 (262)
Q Consensus        70 ~~~~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~---------~~~~v~gvD~s~~~~~~a~~~~~~  129 (262)
                      ..|+...+.... +..+.+|+|+|+|+|.++..++..         ...+++.||+|+.+.+..++++..
T Consensus         3 a~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~   72 (252)
T PF02636_consen    3 ARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE   72 (252)
T ss_dssp             HHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred             HHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence            345555555553 223469999999999998877652         124799999999999999998874

; PDB: 4F3N_A 1ZKD_B.

>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]

Probab=94.39  E-value=0.18  Score=44.78  Aligned_cols=110  Identities=13%  Similarity=0.091  Sum_probs=65.8

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC-ccc--ccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCY--EVHLD  157 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~--~~~~~  157 (262)
                      ..+.++|+|.|.|.-.-.+..   .....++.||.|..|.......... +..       ...+ ++.. -+.  .+|. 
T Consensus       200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~-~~~-------~g~~-~v~~~~~~r~~~pi-  269 (491)
T KOG2539|consen  200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRD-GSH-------IGEP-IVRKLVFHRQRLPI-  269 (491)
T ss_pred             ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcC-hhh-------cCch-hccccchhcccCCC-
Confidence            456899999987753322211   2344699999999999998877652 000       0000 1111 011  1111 


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHH-hccCCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVS-ALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~-~~L~~gG~li~~~~  207 (262)
                         ...+.||+|++.+.++++.... .+..+.+..+ +..++||.+++.-.
T Consensus       270 ---~~~~~yDlvi~ah~l~~~~s~~-~R~~v~~s~~r~~~r~g~~lViIe~  316 (491)
T KOG2539|consen  270 ---DIKNGYDLVICAHKLHELGSKF-SRLDVPESLWRKTDRSGYFLVIIEK  316 (491)
T ss_pred             ---CcccceeeEEeeeeeeccCCch-hhhhhhHHHHHhccCCCceEEEEec
Confidence               1346699999999999874444 5555666654 45578888877643

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=94.36  E-value=0.11  Score=47.21  Aligned_cols=100  Identities=14%  Similarity=0.097  Sum_probs=59.1

Q ss_pred             CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc---------
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE---------  153 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~---------  153 (262)
                      ++.+||-+|||. |.....+++.....|+.+|.++..++.++. +.               .+++..|..+         
T Consensus       163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-lG---------------a~~v~v~~~e~g~~~~gYa  226 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-MG---------------AEFLELDFKEEGGSGDGYA  226 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cC---------------CeEEeccccccccccccce
Confidence            568999999997 555555555444469999999998887776 32               1221211100         


Q ss_pred             --c--ccc-----cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          154 --V--HLD-----KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       154 --~--~~~-----~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                        +  ++.     .....-..+|+|+....+.-    .+.+.-+.++..+.+|||+.++
T Consensus       227 ~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG----~~aP~Lit~emv~~MKpGsvIV  281 (511)
T TIGR00561       227 KVMSEEFIAAEMELFAAQAKEVDIIITTALIPG----KPAPKLITEEMVDSMKAGSVIV  281 (511)
T ss_pred             eecCHHHHHHHHHHHHHHhCCCCEEEECcccCC----CCCCeeehHHHHhhCCCCCEEE
Confidence              0  000     00001256899986654432    1233446677888999998866

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK13699 putative methylase; Provisional

Probab=94.31  E-value=0.22  Score=40.52  Aligned_cols=82  Identities=13%  Similarity=0.260  Sum_probs=48.2

Q ss_pred             eEEEeCccccc--ccccccCCCCCeeEEEEccccc----ccCC-------CHHHHHHHHHHHHhccCCCcEEEEEeC-C-
Q 024797          144 ARLICGDCYEV--HLDKVLADDAPFDICSCQFAMH----YSWS-------TEARARRALANVSALLRPGGTFIGTMP-D-  208 (262)
Q Consensus       144 v~~~~~d~~~~--~~~~~~~~~~~fD~V~~~~~l~----~~~~-------~~~~~~~~l~~~~~~L~~gG~li~~~~-~-  208 (262)
                      ++++++|+.+.  .+     +++++|+|+..--..    ....       ..+-...++.++.|+|||||.+++... + 
T Consensus         2 ~~l~~gD~le~l~~l-----pd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~   76 (227)
T PRK13699          2 SRFILGNCIDVMARF-----PDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNR   76 (227)
T ss_pred             CeEEechHHHHHHhC-----CccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecccc
Confidence            35678887654  23     688899999863221    0000       012346789999999999999876433 2 


Q ss_pred             hHHHHHHHhhhcCCccccceEEE
Q 024797          209 ANVIIKKLREVEGLAIGNSVYWI  231 (262)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~  231 (262)
                      ...+...+ ...++.+.+.+.|.
T Consensus        77 ~~~~~~al-~~~GF~l~~~IiW~   98 (227)
T PRK13699         77 VDRFMAAW-KNAGFSVVGHLVFT   98 (227)
T ss_pred             HHHHHHHH-HHCCCEEeeEEEEE
Confidence            23333333 33455555555555

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.26  E-value=0.48  Score=33.74  Aligned_cols=95  Identities=17%  Similarity=0.074  Sum_probs=60.7

Q ss_pred             CCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEE
Q 024797           93 CGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDIC  169 (262)
Q Consensus        93 cG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V  169 (262)
                      ||.|.++..+++   .....|+.+|.+++.++.+++..                +.++.+|..+....... .-...+.|
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~----------------~~~i~gd~~~~~~l~~a-~i~~a~~v   66 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG----------------VEVIYGDATDPEVLERA-GIEKADAV   66 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT----------------SEEEES-TTSHHHHHHT-TGGCESEE
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc----------------cccccccchhhhHHhhc-CccccCEE
Confidence            455666666654   33337999999999988887642                66889998765432111 22567877


Q ss_pred             EEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          170 SCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       170 ~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      ++...       .+.....+....+.+.|...+++.+.+.+.
T Consensus        67 v~~~~-------~d~~n~~~~~~~r~~~~~~~ii~~~~~~~~  101 (116)
T PF02254_consen   67 VILTD-------DDEENLLIALLARELNPDIRIIARVNDPEN  101 (116)
T ss_dssp             EEESS-------SHHHHHHHHHHHHHHTTTSEEEEEESSHHH
T ss_pred             EEccC-------CHHHHHHHHHHHHHHCCCCeEEEEECCHHH
Confidence            76442       133444555566777888899988887754

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=94.22  E-value=0.47  Score=37.17  Aligned_cols=108  Identities=13%  Similarity=0.141  Sum_probs=73.3

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-----CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      .++..|+|+|.-.|..+..++..     ...+|+++|++-..++-+....              ..+.|+.++-.+....
T Consensus        68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~--------------p~i~f~egss~dpai~  133 (237)
T COG3510          68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV--------------PDILFIEGSSTDPAIA  133 (237)
T ss_pred             cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC--------------CCeEEEeCCCCCHHHH
Confidence            36778999999999877776541     2247999999876655544332              2489999987664321


Q ss_pred             cc--cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          158 KV--LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       158 ~~--~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ..  ....+.--+.+|..+-|++    +...+.|+.+..+|..|-++++...+
T Consensus       134 eqi~~~~~~y~kIfvilDsdHs~----~hvLAel~~~~pllsaG~Y~vVeDs~  182 (237)
T COG3510         134 EQIRRLKNEYPKIFVILDSDHSM----EHVLAELKLLAPLLSAGDYLVVEDSN  182 (237)
T ss_pred             HHHHHHhcCCCcEEEEecCCchH----HHHHHHHHHhhhHhhcCceEEEeccc
Confidence            10  0022333455556667765    77788888899999999999987543

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.14  E-value=1  Score=38.22  Aligned_cols=114  Identities=20%  Similarity=0.148  Sum_probs=77.8

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC---
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA---  161 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~---  161 (262)
                      -..|+-+|||-=.-.-.+-....-.|+-+|. |+.++.=++.+.+.+.      ..+..++++..|+.+..+...+.   
T Consensus        93 ~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~------~~~~~~~~Va~Dl~~~dw~~~L~~~G  165 (297)
T COG3315          93 IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGA------TPPAHRRLVAVDLREDDWPQALAAAG  165 (297)
T ss_pred             ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCC------CCCceEEEEeccccccchHHHHHhcC
Confidence            4689999998632222221112235778887 5566666666664321      12335889999998555433221   


Q ss_pred             -CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          162 -DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       162 -~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                       ....--++++-+++.|+  +++...++|..+...+.||-.+++...
T Consensus       166 ~d~~~pt~~iaEGLl~YL--~~~~v~~ll~~I~~~~~~gS~~~~~~~  210 (297)
T COG3315         166 FDRSRPTLWIAEGLLMYL--PEEAVDRLLSRIAALSAPGSRVAFDYS  210 (297)
T ss_pred             CCcCCCeEEEeccccccC--CHHHHHHHHHHHHHhCCCCceEEEecc
Confidence             24455788888999999  888999999999999999999888765

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=94.14  E-value=0.29  Score=41.88  Aligned_cols=68  Identities=19%  Similarity=0.318  Sum_probs=50.1

Q ss_pred             EEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCee
Q 024797           88 VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD  167 (262)
Q Consensus        88 vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD  167 (262)
                      |+|+.||.|.+..-+...+...+.++|+++.+++..+.++..               .+.++|+.++...+    -..+|
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~---------------~~~~~Di~~~~~~~----~~~~d   61 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN---------------KVPFGDITKISPSD----IPDFD   61 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC---------------CCCccChhhhhhhh----CCCcC
Confidence            689999999999888666766688999999999988887651               34567777665321    23579


Q ss_pred             EEEEccc
Q 024797          168 ICSCQFA  174 (262)
Q Consensus       168 ~V~~~~~  174 (262)
                      +++...-
T Consensus        62 vl~gg~P   68 (315)
T TIGR00675        62 ILLGGFP   68 (315)
T ss_pred             EEEecCC
Confidence            9987653

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []

Probab=93.90  E-value=0.63  Score=40.87  Aligned_cols=125  Identities=14%  Similarity=0.147  Sum_probs=71.1

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHh----c----CCCeEEEEeC----ChhHHHHHHHHhccCccccccccCCCC
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDK----A----KIGYYVGIDI----AEGSIEDCRTRYNGDADHHQRRKKFSF  142 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~----~----~~~~v~gvD~----s~~~~~~a~~~~~~~~~~~~~~~~~~~  142 (262)
                      .+++.....+.-+|+|+|.|.|.-...+++    .    +.-++|||+.    +...++.+.+++.+..      ..++.
T Consensus       101 aIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA------~~lgv  174 (374)
T PF03514_consen  101 AILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFA------RSLGV  174 (374)
T ss_pred             HHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHH------HHcCc
Confidence            345555555667999999999986666554    1    2226999999    7778888877765321      12222


Q ss_pred             CeEEEe---CcccccccccccCCCCCeeEEEEcccccccCCC---HHHHHHHHHHHHhccCCCcEEEEE
Q 024797          143 PARLIC---GDCYEVHLDKVLADDAPFDICSCQFAMHYSWST---EARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       143 ~v~~~~---~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~---~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ..+|..   .++.++....+...++..=+|-+.+.+||+...   .+++...+-...+.|+|.-++++.
T Consensus       175 ~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~E  243 (374)
T PF03514_consen  175 PFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLVE  243 (374)
T ss_pred             cEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEEe
Confidence            233333   233333222221133444455566677887421   122344455566688998666654

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=93.57  E-value=1.3  Score=36.43  Aligned_cols=109  Identities=18%  Similarity=0.151  Sum_probs=59.4

Q ss_pred             CCCeEEEecCCCCcchHHHH---hc---CCCeEEEEeCChh--------------------------HHHHHHHHhccCc
Q 024797           84 RGDVVLDLACGKGGDLIKWD---KA---KIGYYVGIDIAEG--------------------------SIEDCRTRYNGDA  131 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~---~~---~~~~v~gvD~s~~--------------------------~~~~a~~~~~~~~  131 (262)
                      -+..|+|+||-.|..+..+.   +.   ...++++.|.=+.                          .++..++++...+
T Consensus        74 vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~g  153 (248)
T PF05711_consen   74 VPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYG  153 (248)
T ss_dssp             S-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTT
T ss_pred             CCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcC
Confidence            34579999999997655432   21   2345888774221                          2223333332111


Q ss_pred             cccccccCCCCCeEEEeCcccc-cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          132 DHHQRRKKFSFPARLICGDCYE-VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       132 ~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                             ....++.++.|.+.+ ++-    .+..++-++.+..-+.      +.-...|..++..|.|||++++...+.
T Consensus       154 -------l~~~~v~~vkG~F~dTLp~----~p~~~IAll~lD~DlY------esT~~aLe~lyprl~~GGiIi~DDY~~  215 (248)
T PF05711_consen  154 -------LLDDNVRFVKGWFPDTLPD----APIERIALLHLDCDLY------ESTKDALEFLYPRLSPGGIIIFDDYGH  215 (248)
T ss_dssp             -------TSSTTEEEEES-HHHHCCC-----TT--EEEEEE---SH------HHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred             -------CCcccEEEECCcchhhhcc----CCCccEEEEEEeccch------HHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence                   123579999998744 221    1334555555444332      567889999999999999999987665

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=93.44  E-value=1.5  Score=40.23  Aligned_cols=68  Identities=21%  Similarity=0.357  Sum_probs=43.8

Q ss_pred             cCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-----CCCeEEEEeCChhHHHHHHHHhc
Q 024797           60 ASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        60 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      .+..+.++.+...+..++... ..++..|.|..||+|.++......     ....++|.+....+...++.++.
T Consensus       194 ~g~~~Tp~~Iv~l~~~~~~~~-~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~  266 (501)
T TIGR00497       194 GGEFFTPQDISELLARIAIGK-KDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMI  266 (501)
T ss_pred             CceeeCcHHHHHHHHHHhccC-CCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHH
Confidence            344445555544433332211 125578999999999988754331     12358999999999999988753

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=93.28  E-value=0.73  Score=39.26  Aligned_cols=98  Identities=19%  Similarity=0.276  Sum_probs=58.9

Q ss_pred             ccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc-c
Q 024797           82 ARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-V  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~  159 (262)
                      ..++.+||..|+|. |..+..+++....++++++.+++..+.+++. .               +..+..+-....... .
T Consensus       163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~-g---------------~~~~~~~~~~~~~~~~~  226 (338)
T cd08254         163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKEL-G---------------ADEVLNSLDDSPKDKKA  226 (338)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh-C---------------CCEEEcCCCcCHHHHHH
Confidence            45778899988763 6666666665555799999999888887552 1               111111110000000 0


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ......+|+|+.....          ...+.++.+.|+++|.++..
T Consensus       227 ~~~~~~~D~vid~~g~----------~~~~~~~~~~l~~~G~~v~~  262 (338)
T cd08254         227 AGLGGGFDVIFDFVGT----------QPTFEDAQKAVKPGGRIVVV  262 (338)
T ss_pred             HhcCCCceEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence            0134578988743221          23567788999999998864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=93.06  E-value=0.16  Score=43.41  Aligned_cols=69  Identities=22%  Similarity=0.364  Sum_probs=50.7

Q ss_pred             eEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCe
Q 024797           87 VVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPF  166 (262)
Q Consensus        87 ~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f  166 (262)
                      +++|+-||.|.+...+...+...+.++|+++.+++.-+.++.                ....+|+..+....+  +. .+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~----------------~~~~~Di~~~~~~~l--~~-~~   62 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP----------------EVICGDITEIDPSDL--PK-DV   62 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT----------------EEEESHGGGCHHHHH--HH-T-
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc----------------ccccccccccccccc--cc-cc
Confidence            689999999999988877777679999999999888887753                567888877764311  22 59


Q ss_pred             eEEEEccc
Q 024797          167 DICSCQFA  174 (262)
Q Consensus       167 D~V~~~~~  174 (262)
                      |+++...-
T Consensus        63 D~l~ggpP   70 (335)
T PF00145_consen   63 DLLIGGPP   70 (335)
T ss_dssp             SEEEEE--
T ss_pred             eEEEeccC
Confidence            99997653

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues

Probab=93.03  E-value=0.59  Score=36.57  Aligned_cols=100  Identities=14%  Similarity=0.114  Sum_probs=57.4

Q ss_pred             CCC-eEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc-
Q 024797           84 RGD-VVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL-  160 (262)
Q Consensus        84 ~~~-~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-  160 (262)
                      ++. .|+.+|||-=.....+... +...++-+|+ +++++.-++.+.+.+...      ..+.+++.+|+.+..+...+ 
T Consensus        77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~------~~~~~~v~~Dl~~~~~~~~L~  149 (183)
T PF04072_consen   77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARP------PANYRYVPADLRDDSWIDALP  149 (183)
T ss_dssp             TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHH------HEESSEEES-TTSHHHHHHHH
T ss_pred             CCCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccC------CcceeEEeccccchhhHHHHH
Confidence            444 8999999975444444332 2446788887 446666666655321110      12356789998864432211 


Q ss_pred             ---CCCCCeeEEEEcccccccCCCHHHHHHHHHHH
Q 024797          161 ---ADDAPFDICSCQFAMHYSWSTEARARRALANV  192 (262)
Q Consensus       161 ---~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~  192 (262)
                         +..+.--++++-+++.|+  +.+....+++.+
T Consensus       150 ~~g~~~~~ptl~i~Egvl~Yl--~~~~~~~ll~~i  182 (183)
T PF04072_consen  150 KAGFDPDRPTLFIAEGVLMYL--SPEQVDALLRAI  182 (183)
T ss_dssp             HCTT-TTSEEEEEEESSGGGS---HHHHHHHHHHH
T ss_pred             HhCCCCCCCeEEEEcchhhcC--CHHHHHHHHHHh
Confidence               134566788888999999  777777777765

It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=92.88  E-value=0.47  Score=40.14  Aligned_cols=120  Identities=16%  Similarity=0.203  Sum_probs=75.4

Q ss_pred             CeEEEecCCCCcchHHHHhcC------------C---------CeEEEEeCCh--hHHHHHHHHhccCcccc--------
Q 024797           86 DVVLDLACGKGGDLIKWDKAK------------I---------GYYVGIDIAE--GSIEDCRTRYNGDADHH--------  134 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~~------------~---------~~v~gvD~s~--~~~~~a~~~~~~~~~~~--------  134 (262)
                      .+||-||.|.|.-+..++..-            .         ..++.||+.+  ..++.....+....+..        
T Consensus        88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~  167 (315)
T PF11312_consen   88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW  167 (315)
T ss_pred             ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence            599999999988666554310            1         2688999874  34444444443220000        


Q ss_pred             ccccCCCCCeEEEeCcccccccccc--cCCCCCeeEEEEcccccccC-CCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          135 QRRKKFSFPARLICGDCYEVHLDKV--LADDAPFDICSCQFAMHYSW-STEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       135 ~~~~~~~~~v~~~~~d~~~~~~~~~--~~~~~~fD~V~~~~~l~~~~-~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ........++.|.+.|+..+....+  .......++|...++++-++ .+...-.++|..+...++||..|+|.
T Consensus       168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVv  241 (315)
T PF11312_consen  168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVV  241 (315)
T ss_pred             ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEE
Confidence            0011223568999999987765321  11223578888888776443 23456688999999999999998764

>PTZ00357 methyltransferase; Provisional

Probab=92.83  E-value=0.49  Score=44.27  Aligned_cols=110  Identities=16%  Similarity=0.117  Sum_probs=62.5

Q ss_pred             eEEEecCCCCcchHHHHhc----C-CCeEEEEeCChhHHHHHHHHhc-cCccccccccCCCCCeEEEeCccccccccc--
Q 024797           87 VVLDLACGKGGDLIKWDKA----K-IGYYVGIDIAEGSIEDCRTRYN-GDADHHQRRKKFSFPARLICGDCYEVHLDK--  158 (262)
Q Consensus        87 ~vLDiGcG~G~~~~~l~~~----~-~~~v~gvD~s~~~~~~a~~~~~-~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--  158 (262)
                      .|+-+|+|.|-+....++.    + .-++++|+-++..+.....+.. .....+ ...-.+..|+++..|+..+....  
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n-~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQ-LAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhccccccc-ccccCCCeEEEEeCccccccccccc
Confidence            5899999999887765542    2 2269999999765544444321 000100 00011345999999999875421  


Q ss_pred             --c--cCCCCCeeEEEE--cccccccCCCHHHHHHHHHHHHhccCC----CcE
Q 024797          159 --V--LADDAPFDICSC--QFAMHYSWSTEARARRALANVSALLRP----GGT  201 (262)
Q Consensus       159 --~--~~~~~~fD~V~~--~~~l~~~~~~~~~~~~~l~~~~~~L~~----gG~  201 (262)
                        .  ...-+++|+||+  .+.+-    +.+.-.+-|.-+.+.||+    +|+
T Consensus       782 ~s~~~P~~~gKaDIVVSELLGSFG----DNELSPECLDGaQrfLKdiqhsdGI  830 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVSELLGSLG----DNELSPECLEAFHAQLEDIQLSRGI  830 (1072)
T ss_pred             ccccccccccccceehHhhhcccc----cccCCHHHHHHHHHhhhhhcccccc
Confidence              0  001147999986  22221    223334556666666665    675

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=92.83  E-value=0.61  Score=40.27  Aligned_cols=92  Identities=14%  Similarity=0.062  Sum_probs=55.5

Q ss_pred             ccCCCeEEEecCCC-CcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           82 ARRGDVVLDLACGK-GGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        82 ~~~~~~vLDiGcG~-G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ..++++||-+|||. |..+..+++.  +..+++++|.+++-++.+++ +.               ... ..+  ++.   
T Consensus       161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~---------------~~~-~~~--~~~---  218 (341)
T cd08237         161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-AD---------------ETY-LID--DIP---  218 (341)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cC---------------cee-ehh--hhh---
Confidence            35789999999875 4444444443  34579999999888877764 22               111 001  111   


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                         ....+|+|+-.-.-.       .....+....+.|++||++++.
T Consensus       219 ---~~~g~d~viD~~G~~-------~~~~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         219 ---EDLAVDHAFECVGGR-------GSQSAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             ---hccCCcEEEECCCCC-------ccHHHHHHHHHhCcCCcEEEEE
Confidence               122478887433210       0134677788999999998753

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=92.59  E-value=0.38  Score=41.63  Aligned_cols=42  Identities=17%  Similarity=0.042  Sum_probs=33.7

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHH
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT  125 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~  125 (262)
                      +-..|+|+|.|.|.++..+.-...-.|.+||-|....+.|++
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence            556899999999988887755545579999999877777764

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=92.24  E-value=0.89  Score=38.01  Aligned_cols=98  Identities=16%  Similarity=0.045  Sum_probs=55.1

Q ss_pred             ccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++.+||-+|+|+ |..+..+++. +...++++|.+++-++.+++.-..               .++..+-........
T Consensus       118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~---------------~~i~~~~~~~~~~~~  182 (280)
T TIGR03366       118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT---------------ALAEPEVLAERQGGL  182 (280)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc---------------EecCchhhHHHHHHH
Confidence            34788999998864 4444455553 333588999998888777663210               011100000000000


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      . ....+|+|+-...-          ...+..+.+.|+++|.++..
T Consensus       183 ~-~~~g~d~vid~~G~----------~~~~~~~~~~l~~~G~iv~~  217 (280)
T TIGR03366       183 Q-NGRGVDVALEFSGA----------TAAVRACLESLDVGGTAVLA  217 (280)
T ss_pred             h-CCCCCCEEEECCCC----------hHHHHHHHHHhcCCCEEEEe
Confidence            0 23458988743211          23566778899999998753

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=92.22  E-value=1.9  Score=37.04  Aligned_cols=91  Identities=10%  Similarity=-0.045  Sum_probs=55.3

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ...++.+||-.|+|. |..+..+++....++++++.+++-++.+++.-..               .++  +..+.     
T Consensus       162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~---------------~vi--~~~~~-----  219 (329)
T TIGR02822       162 SLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAA---------------SAG--GAYDT-----  219 (329)
T ss_pred             CCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCc---------------eec--ccccc-----
Confidence            456788999999864 4344445554444699999999888887764220               111  11111     


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        ..+.+|+++..-..          ...+....+.|++||++++.
T Consensus       220 --~~~~~d~~i~~~~~----------~~~~~~~~~~l~~~G~~v~~  253 (329)
T TIGR02822       220 --PPEPLDAAILFAPA----------GGLVPPALEALDRGGVLAVA  253 (329)
T ss_pred             --CcccceEEEECCCc----------HHHHHHHHHhhCCCcEEEEE
Confidence              12357876532211          13577788999999998763

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=92.06  E-value=0.69  Score=43.90  Aligned_cols=116  Identities=16%  Similarity=0.103  Sum_probs=63.7

Q ss_pred             CCCeEEEecCCCCcchHHHHhc--------C-----CCeEEEEeCCh---hHHHHHHHHhccC----------------c
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA--------K-----IGYYVGIDIAE---GSIEDCRTRYNGD----------------A  131 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~--------~-----~~~v~gvD~s~---~~~~~a~~~~~~~----------------~  131 (262)
                      +.-+|||+|-|+|......++.        +     .-+++++|..+   +.+..+.+.+.+.                +
T Consensus        57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g  136 (662)
T PRK01747         57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG  136 (662)
T ss_pred             CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence            4468999999999865544321        1     12588999643   3333333222110                0


Q ss_pred             cccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHH-HHHHHHHHHhccCCCcEEEEE
Q 024797          132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR-ARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       132 ~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~-~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .....-......+++..+|+.+.-- .   -...||+++....--.-  +++. -..++..+.+.++|||.++-.
T Consensus       137 ~~~~~~~~~~~~l~l~~gd~~~~~~-~---~~~~~d~~~lD~FsP~~--np~~W~~~~~~~l~~~~~~~~~~~t~  205 (662)
T PRK01747        137 CHRLLFDDGRVTLDLWFGDANELLP-Q---LDARADAWFLDGFAPAK--NPDMWSPNLFNALARLARPGATLATF  205 (662)
T ss_pred             ceEEEecCCcEEEEEEecCHHHHHH-h---ccccccEEEeCCCCCcc--ChhhccHHHHHHHHHHhCCCCEEEEe
Confidence            0000000111245567778754311 0   13569999987632211  1121 267899999999999988744

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=92.00  E-value=0.38  Score=42.20  Aligned_cols=60  Identities=15%  Similarity=0.126  Sum_probs=50.9

Q ss_pred             CCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       142 ~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .+++++++++.+..-.   .+++++|.++....+.++  +++...+.++++.+.++|||+++.-.
T Consensus       275 drv~i~t~si~~~L~~---~~~~s~~~~vL~D~~Dwm--~~~~~~~~~~~l~~~~~pgaRV~~Rs  334 (380)
T PF11899_consen  275 DRVRIHTDSIEEVLRR---LPPGSFDRFVLSDHMDWM--DPEQLNEEWQELARTARPGARVLWRS  334 (380)
T ss_pred             CeEEEEeccHHHHHHh---CCCCCeeEEEecchhhhC--CHHHHHHHHHHHHHHhCCCCEEEEee
Confidence            6789999998765321   157999999999999999  88999999999999999999999854

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=91.71  E-value=1.1  Score=39.14  Aligned_cols=98  Identities=17%  Similarity=0.127  Sum_probs=55.9

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (262)
                      ...++.+||=.|+|. |..+..+++. +...|+++|.+++-++.+++.-.               ..++...-.++.  .
T Consensus       188 ~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga---------------~~~i~~~~~~~~~~i  252 (371)
T cd08281         188 GVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA---------------TATVNAGDPNAVEQV  252 (371)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC---------------ceEeCCCchhHHHHH
Confidence            346788999999764 4444555553 33369999999998888865321               111111101100  0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ...  ..+.+|+|+-...-          ...+....+.|+++|.++..
T Consensus       253 ~~~--~~~g~d~vid~~G~----------~~~~~~~~~~l~~~G~iv~~  289 (371)
T cd08281         253 REL--TGGGVDYAFEMAGS----------VPALETAYEITRRGGTTVTA  289 (371)
T ss_pred             HHH--hCCCCCEEEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence            001  12368988743211          13456677889999998753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.47  E-value=1.6  Score=35.60  Aligned_cols=98  Identities=22%  Similarity=0.213  Sum_probs=57.4

Q ss_pred             cCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+||..|+|+ |..+..+++....++++++.+++..+.+++...               ..++...-......-...
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~~~~~~  197 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA---------------DHVIDYKEEDLEEELRLT  197 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC---------------ceeccCCcCCHHHHHHHh
Confidence            5788999999986 555555655555689999999887777754321               001100000000000001


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ....+|+|+....-       .   ..+..+.+.|+++|.++..
T Consensus       198 ~~~~~d~vi~~~~~-------~---~~~~~~~~~l~~~G~~v~~  231 (271)
T cd05188         198 GGGGADVVIDAVGG-------P---ETLAQALRLLRPGGRIVVV  231 (271)
T ss_pred             cCCCCCEEEECCCC-------H---HHHHHHHHhcccCCEEEEE
Confidence            24579999854321       0   3456677888999998764

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=91.41  E-value=0.39  Score=44.13  Aligned_cols=104  Identities=27%  Similarity=0.345  Sum_probs=62.5

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCC-eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc----c
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV----H  155 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~----~  155 (262)
                      +.++..|||+||.+|..+....+. +.+ -|+|+|+-+-                    ....++..++.|+..-    +
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi--------------------kp~~~c~t~v~dIttd~cr~~  101 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI--------------------KPIPNCDTLVEDITTDECRSK  101 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec--------------------ccCCccchhhhhhhHHHHHHH
Confidence            467889999999999988766552 333 5999999761                    1134455566665432    2


Q ss_pred             cccccCCCCCeeEEEEccccccc--CC-----CHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          156 LDKVLADDAPFDICSCQFAMHYS--WS-----TEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~--~~-----~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +...+ ...+.|+|+..++-.--  |.     ....-...++-+...|+.||.++-.+
T Consensus       102 l~k~l-~t~~advVLhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvtkv  158 (780)
T KOG1098|consen  102 LRKIL-KTWKADVVLHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVTKV  158 (780)
T ss_pred             HHHHH-HhCCCcEEeecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccccc
Confidence            21111 34556999876532211  00     01112345666778899999976544

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=91.31  E-value=0.66  Score=39.96  Aligned_cols=77  Identities=17%  Similarity=0.233  Sum_probs=55.6

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      ..+++|+-||.|.+..-+...+...+.++|+++.+++.-+.+...              ..++..|+.........  ..
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~--------------~~~~~~di~~~~~~~~~--~~   66 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH--------------GDIILGDIKELDGEALR--KS   66 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC--------------CceeechHhhcChhhcc--cc
Confidence            357999999999998888666776799999999999998887651              44566777655432111  11


Q ss_pred             CeeEEEEcccccc
Q 024797          165 PFDICSCQFAMHY  177 (262)
Q Consensus       165 ~fD~V~~~~~l~~  177 (262)
                      .+|+++...-.+.
T Consensus        67 ~~DvligGpPCQ~   79 (328)
T COG0270          67 DVDVLIGGPPCQD   79 (328)
T ss_pred             CCCEEEeCCCCcc
Confidence            7899997664443

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=91.08  E-value=0.61  Score=33.84  Aligned_cols=85  Identities=19%  Similarity=0.152  Sum_probs=53.4

Q ss_pred             CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--cccccCCCCCeeEEEEcc
Q 024797           96 GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKVLADDAPFDICSCQF  173 (262)
Q Consensus        96 G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~~~~~~fD~V~~~~  173 (262)
                      |..+..+++....+++++|.++.-++.+++.-.               -.++..+-.++.  .... .....+|+|+-.-
T Consensus         3 G~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga---------------~~~~~~~~~~~~~~i~~~-~~~~~~d~vid~~   66 (130)
T PF00107_consen    3 GLMAIQLAKAMGAKVIATDRSEEKLELAKELGA---------------DHVIDYSDDDFVEQIREL-TGGRGVDVVIDCV   66 (130)
T ss_dssp             HHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTE---------------SEEEETTTSSHHHHHHHH-TTTSSEEEEEESS
T ss_pred             HHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcc---------------cccccccccccccccccc-cccccceEEEEec
Confidence            556666766544789999999999999887532               122222211110  1111 1335799998543


Q ss_pred             cccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          174 AMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       174 ~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .-          ...+.....+|+++|.+++.-
T Consensus        67 g~----------~~~~~~~~~~l~~~G~~v~vg   89 (130)
T PF00107_consen   67 GS----------GDTLQEAIKLLRPGGRIVVVG   89 (130)
T ss_dssp             SS----------HHHHHHHHHHEEEEEEEEEES
T ss_pred             Cc----------HHHHHHHHHHhccCCEEEEEE
Confidence            31          346788889999999998753

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.04  E-value=0.91  Score=40.34  Aligned_cols=86  Identities=9%  Similarity=0.034  Sum_probs=53.8

Q ss_pred             CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ++++|+-+|||. |......++....+|+.+|.++.-+..|++.-                ....  +..+.        
T Consensus       201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G----------------~~~~--~~~e~--------  254 (413)
T cd00401         201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG----------------YEVM--TMEEA--------  254 (413)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC----------------CEEc--cHHHH--------
Confidence            688999999997 65555555543347999999988777776521                1111  11111        


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHH-HHhccCCCcEEEEE
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALAN-VSALLRPGGTFIGT  205 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~-~~~~L~~gG~li~~  205 (262)
                      -...|+|+..-..          ..++.. ..+.+++||+++..
T Consensus       255 v~~aDVVI~atG~----------~~~i~~~~l~~mk~Ggilvnv  288 (413)
T cd00401         255 VKEGDIFVTTTGN----------KDIITGEHFEQMKDGAIVCNI  288 (413)
T ss_pred             HcCCCEEEECCCC----------HHHHHHHHHhcCCCCcEEEEe
Confidence            1346999864322          123443 57899999998654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=90.89  E-value=1.2  Score=38.48  Aligned_cols=94  Identities=12%  Similarity=-0.011  Sum_probs=54.4

Q ss_pred             cCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeC---ChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDI---AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~---s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      .++.+||-+|+|. |.++..+++....++++++.   ++.-++.+++.-.                ..+  +..+.....
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga----------------~~v--~~~~~~~~~  232 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGA----------------TYV--NSSKTPVAE  232 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCC----------------EEe--cCCccchhh
Confidence            4788999999875 55555566544347999986   5666666654211                111  111100000


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      . ...+.+|+|+-...-          ...+....+.|++||.+++.
T Consensus       233 ~-~~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~  268 (355)
T cd08230         233 V-KLVGEFDLIIEATGV----------PPLAFEALPALAPNGVVILF  268 (355)
T ss_pred             h-hhcCCCCEEEECcCC----------HHHHHHHHHHccCCcEEEEE
Confidence            0 012468988754321          12567788999999998653

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=90.67  E-value=0.93  Score=38.38  Aligned_cols=98  Identities=9%  Similarity=0.063  Sum_probs=69.4

Q ss_pred             CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ++.+|.-+|.|. |.....++......|+-+|+|.+-+.+....+.             .++........++..     .
T Consensus       167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-------------~rv~~~~st~~~iee-----~  228 (371)
T COG0686         167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-------------GRVHTLYSTPSNIEE-----A  228 (371)
T ss_pred             CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-------------ceeEEEEcCHHHHHH-----H
Confidence            446788888885 767777766666689999999888877776654             235666555544432     2


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                      -.+.|+|+..-.+-    ....+.-+.+++.+.+|||+.++
T Consensus       229 v~~aDlvIgaVLIp----gakaPkLvt~e~vk~MkpGsViv  265 (371)
T COG0686         229 VKKADLVIGAVLIP----GAKAPKLVTREMVKQMKPGSVIV  265 (371)
T ss_pred             hhhccEEEEEEEec----CCCCceehhHHHHHhcCCCcEEE
Confidence            35789988544332    34567788899999999999886

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=90.46  E-value=2  Score=36.83  Aligned_cols=100  Identities=17%  Similarity=0.124  Sum_probs=55.2

Q ss_pred             HhccCCCeEEEecCCC-CcchHHHHhcCCCe-EEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-cc
Q 024797           80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HL  156 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~  156 (262)
                      ....++.+||=.|+|. |..+..+++....+ ++++|.+++..+.+++.-.               -.++...-.+. ..
T Consensus       159 ~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga---------------~~~i~~~~~~~~~~  223 (339)
T cd08239         159 VGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA---------------DFVINSGQDDVQEI  223 (339)
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC---------------CEEEcCCcchHHHH
Confidence            3446788999998764 43444455543334 9999999988887765321               01111110000 00


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .... ....+|+|+-...-          ...+....+.|+++|.+++.
T Consensus       224 ~~~~-~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~  261 (339)
T cd08239         224 RELT-SGAGADVAIECSGN----------TAARRLALEAVRPWGRLVLV  261 (339)
T ss_pred             HHHh-CCCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEE
Confidence            0000 23468999743221          12345667889999998753

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=90.39  E-value=2.4  Score=39.38  Aligned_cols=101  Identities=13%  Similarity=0.047  Sum_probs=60.1

Q ss_pred             CeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        86 ~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      .+|+=+|||. |+.....+......++.+|.+++.++.+++ ..               ...+.+|+.+....... .-+
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-~g---------------~~~i~GD~~~~~~L~~a-~i~  480 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-RG---------------IRAVLGNAANEEIMQLA-HLD  480 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CC---------------CeEEEcCCCCHHHHHhc-Ccc
Confidence            5788888876 444333333344479999999999888875 22               67899998775421111 224


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      +.|.+++.-.      +..+ ...+-...+...|...++..+.+.+
T Consensus       481 ~a~~viv~~~------~~~~-~~~iv~~~~~~~~~~~iiar~~~~~  519 (558)
T PRK10669        481 CARWLLLTIP------NGYE-AGEIVASAREKRPDIEIIARAHYDD  519 (558)
T ss_pred             ccCEEEEEcC------ChHH-HHHHHHHHHHHCCCCeEEEEECCHH
Confidence            6786654321      1111 2223333455577888888776654

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=90.36  E-value=2.2  Score=35.52  Aligned_cols=107  Identities=16%  Similarity=0.003  Sum_probs=71.6

Q ss_pred             CCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .+..|+-+|- .-..+..++. ....++..+|+++..+...++...+.+..|         ++.+..|+.+. ++.-  -
T Consensus       152 ~gK~I~vvGD-DDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~---------ie~~~~Dlr~p-lpe~--~  218 (354)
T COG1568         152 EGKEIFVVGD-DDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN---------IEAFVFDLRNP-LPED--L  218 (354)
T ss_pred             CCCeEEEEcC-chhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc---------hhheeehhccc-ChHH--H
Confidence            5677999982 2223333333 345579999999999999999888665543         77888887653 2110  1


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC---cEEEEEeCC
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG---GTFIGTMPD  208 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g---G~li~~~~~  208 (262)
                      ..+||+.+..-.-     +......++.+-...|+..   |++-++.-.
T Consensus       219 ~~kFDvfiTDPpe-----Ti~alk~FlgRGI~tLkg~~~aGyfgiT~re  262 (354)
T COG1568         219 KRKFDVFITDPPE-----TIKALKLFLGRGIATLKGEGCAGYFGITRRE  262 (354)
T ss_pred             HhhCCeeecCchh-----hHHHHHHHHhccHHHhcCCCccceEeeeecc
Confidence            3689999854321     2355677888877888776   777777643

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=90.08  E-value=3.1  Score=39.28  Aligned_cols=103  Identities=15%  Similarity=0.077  Sum_probs=63.9

Q ss_pred             CCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        85 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ..+|+=+|||. |......+....-.++.+|.+++.++.+++. .               ...+.+|..+....... .-
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g---------------~~v~~GDat~~~~L~~a-gi  462 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-G---------------MKVFYGDATRMDLLESA-GA  462 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-C---------------CeEEEEeCCCHHHHHhc-CC
Confidence            35788899886 5544444444444799999999999988652 2               56789998876532111 22


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      ++.|++++...      +.+ ....+-...+.+.|.-.++....|.+.
T Consensus       463 ~~A~~vvv~~~------d~~-~n~~i~~~ar~~~p~~~iiaRa~d~~~  503 (621)
T PRK03562        463 AKAEVLINAID------DPQ-TSLQLVELVKEHFPHLQIIARARDVDH  503 (621)
T ss_pred             CcCCEEEEEeC------CHH-HHHHHHHHHHHhCCCCeEEEEECCHHH
Confidence            46777775431      222 233334455556777777776666543

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=89.79  E-value=2.7  Score=32.38  Aligned_cols=62  Identities=21%  Similarity=0.178  Sum_probs=39.9

Q ss_pred             EeCcccccccccccCCCCCeeEEEEcccccc---------cCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHY---------SWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       147 ~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~---------~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      .-.|+..+..... .....||.|+-++--.-         +.....-...++..+.++|+++|.+.++..+.
T Consensus        58 ~~VDat~l~~~~~-~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~  128 (166)
T PF10354_consen   58 HGVDATKLHKHFR-LKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG  128 (166)
T ss_pred             cCCCCCccccccc-ccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            3446666543211 14578999997763221         00123456788999999999999999987543

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=89.71  E-value=3.3  Score=38.88  Aligned_cols=102  Identities=9%  Similarity=0.037  Sum_probs=62.4

Q ss_pred             CeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        86 ~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      .+|+=+|+|. |......+......++.+|.+++.++.+++. .               ...+.+|+.+....... .-.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g---------------~~v~~GDat~~~~L~~a-gi~  463 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-G---------------YKVYYGDATQLELLRAA-GAE  463 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-C---------------CeEEEeeCCCHHHHHhc-CCc
Confidence            4677777765 4333333333444799999999999988752 2               56789998875532111 224


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      +.|++++...      +.+. ...+-...|.+.|...++....|...
T Consensus       464 ~A~~vv~~~~------d~~~-n~~i~~~~r~~~p~~~IiaRa~~~~~  503 (601)
T PRK03659        464 KAEAIVITCN------EPED-TMKIVELCQQHFPHLHILARARGRVE  503 (601)
T ss_pred             cCCEEEEEeC------CHHH-HHHHHHHHHHHCCCCeEEEEeCCHHH
Confidence            6777765331      2222 22333445567888888888776643

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=89.35  E-value=4.1  Score=35.33  Aligned_cols=99  Identities=15%  Similarity=0.140  Sum_probs=55.8

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (262)
                      ...++.+||-.|||. |..+..+++. +..+|+++|.+++..+.+++.-.               -.++...-.+..  .
T Consensus       173 ~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga---------------~~~i~~~~~~~~~~i  237 (358)
T TIGR03451       173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA---------------THTVNSSGTDPVEAI  237 (358)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC---------------ceEEcCCCcCHHHHH
Confidence            346788999998764 4444555554 33359999999988888865311               111111100100  0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .... ....+|+|+-.-.-          ...+....+.+++||++++.
T Consensus       238 ~~~~-~~~g~d~vid~~g~----------~~~~~~~~~~~~~~G~iv~~  275 (358)
T TIGR03451       238 RALT-GGFGADVVIDAVGR----------PETYKQAFYARDLAGTVVLV  275 (358)
T ss_pred             HHHh-CCCCCCEEEECCCC----------HHHHHHHHHHhccCCEEEEE
Confidence            0000 22358988743221          12456677889999998753

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK10458 DNA cytosine methylase; Provisional

Probab=89.34  E-value=1.6  Score=39.46  Aligned_cols=43  Identities=12%  Similarity=0.144  Sum_probs=36.0

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY  127 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~  127 (262)
                      .-+++|+-||.|.+...+-..+...|.++|+++.+.+.-+.++
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~  130 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANW  130 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHc
Confidence            4589999999999988886666656889999999888887765

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=88.67  E-value=2.1  Score=36.34  Aligned_cols=86  Identities=12%  Similarity=-0.019  Sum_probs=51.6

Q ss_pred             cCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .++.+||=+|||. |.++..+++. +...++++|.+++.++.+....                  ++  |..+.      
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~------------------~i--~~~~~------  196 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE------------------VL--DPEKD------  196 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc------------------cc--Chhhc------
Confidence            3567899999875 5555666654 4445778888877666554310                  00  11000      


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                       ....+|+|+-.-.-          ...+..+.+.|+++|++++.
T Consensus       197 -~~~g~Dvvid~~G~----------~~~~~~~~~~l~~~G~iv~~  230 (308)
T TIGR01202       197 -PRRDYRAIYDASGD----------PSLIDTLVRRLAKGGEIVLA  230 (308)
T ss_pred             -cCCCCCEEEECCCC----------HHHHHHHHHhhhcCcEEEEE
Confidence             12458988754322          12456778899999998754

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=88.59  E-value=3.3  Score=35.44  Aligned_cols=95  Identities=23%  Similarity=0.257  Sum_probs=54.7

Q ss_pred             CCCeEEEecCCC-CcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ++.+||-.|||. |..+..+++... ..+++++.+++..+.+++.-.               -.++..+-..  ......
T Consensus       165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~---------------~~vi~~~~~~--~~~~~~  227 (339)
T cd08232         165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA---------------DETVNLARDP--LAAYAA  227 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC---------------CEEEcCCchh--hhhhhc
Confidence            678899988765 555555655433 368999999888876655311               0111111000  100000


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ..+.+|+|+.....          ...+..+.+.|+++|.++..
T Consensus       228 ~~~~vd~vld~~g~----------~~~~~~~~~~L~~~G~~v~~  261 (339)
T cd08232         228 DKGDFDVVFEASGA----------PAALASALRVVRPGGTVVQV  261 (339)
T ss_pred             cCCCccEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            12458999854321          12457788999999998754

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=88.46  E-value=1.2  Score=39.21  Aligned_cols=49  Identities=14%  Similarity=-0.007  Sum_probs=36.9

Q ss_pred             HHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 024797           78 VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY  127 (262)
Q Consensus        78 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~  127 (262)
                      ..+.+.++++||-|++|....+.. +.....+|++||+|+..+...+-+.
T Consensus        29 ~aL~i~~~d~vl~ItSaG~N~L~y-L~~~P~~I~aVDlNp~Q~aLleLKl   77 (380)
T PF11899_consen   29 EALNIGPDDRVLTITSAGCNALDY-LLAGPKRIHAVDLNPAQNALLELKL   77 (380)
T ss_pred             HHhCCCCCCeEEEEccCCchHHHH-HhcCCceEEEEeCCHHHHHHHHHHH
Confidence            344567899999999887755555 4456669999999999877766444

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=88.43  E-value=0.45  Score=41.80  Aligned_cols=62  Identities=19%  Similarity=0.165  Sum_probs=48.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-CCeEEEeCcccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYE  153 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~  153 (262)
                      ++|..|.|+.||.|-+...++... ..|++-|+++++++..+.++...        ... .+++.+.+|+..
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lN--------kv~~~~iei~Nmda~~  310 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLN--------KVDPSAIEIFNMDAKD  310 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhcccc--------ccchhheeeecccHHH
Confidence            688999999999999998886655 58999999999999999887632        222 236666666543

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=88.29  E-value=3.1  Score=35.84  Aligned_cols=44  Identities=20%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             ccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 024797           82 ARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT  125 (262)
Q Consensus        82 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~  125 (262)
                      ..++.+||=.|+|+ |..+..+++. +...+++++.+++-.+.+++
T Consensus       158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  203 (347)
T PRK10309        158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS  203 (347)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            45788999998765 4444445543 33347899999988887754

>PLN02740 Alcohol dehydrogenase-like

Probab=87.82  E-value=3.7  Score=36.01  Aligned_cols=45  Identities=20%  Similarity=0.281  Sum_probs=32.6

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhcCC-CeEEEEeCChhHHHHHHH
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRT  125 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~  125 (262)
                      ...++++||-+|||. |..+..+++... ..|+++|.+++.++.+++
T Consensus       195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~  241 (381)
T PLN02740        195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE  241 (381)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence            356788999999864 444455555433 369999999998888865

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=87.16  E-value=4.5  Score=31.52  Aligned_cols=107  Identities=13%  Similarity=0.045  Sum_probs=57.7

Q ss_pred             eEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccc--------cCCCCCeEEEeCcccccccc
Q 024797           87 VVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR--------KKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        87 ~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~--------~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +|.-+|+|+ |.-+..++....-.|+.+|.+++.++.+.+++...-....+.        .....++. ...|+...   
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~---   76 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA---   76 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG---
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH---
Confidence            356678875 433333333344489999999999999887765310000000        00011222 23333221   


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                            ...|+|+-.     +.++.+-.+.++.++.+.+.|+-.|.-.+..
T Consensus        77 ------~~adlViEa-----i~E~l~~K~~~~~~l~~~~~~~~ilasnTSs  116 (180)
T PF02737_consen   77 ------VDADLVIEA-----IPEDLELKQELFAELDEICPPDTILASNTSS  116 (180)
T ss_dssp             ------CTESEEEE------S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred             ------hhhheehhh-----ccccHHHHHHHHHHHHHHhCCCceEEecCCC
Confidence                  256887632     2345688899999999999999887766543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=87.12  E-value=2.3  Score=35.79  Aligned_cols=55  Identities=29%  Similarity=0.400  Sum_probs=42.6

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhcc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG  129 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~  129 (262)
                      ..+.+.. ...+++.|||.-+|+|..+... ......++|+|++++-++.+.+++..
T Consensus       212 ~~r~i~~-~s~~~diVlDpf~GsGtt~~aa-~~~~r~~ig~e~~~~y~~~~~~r~~~  266 (302)
T COG0863         212 IERLIRD-YSFPGDIVLDPFAGSGTTGIAA-KNLGRRFIGIEINPEYVEVALKRLQE  266 (302)
T ss_pred             HHHHHHh-cCCCCCEEeecCCCCChHHHHH-HHcCCceEEEecCHHHHHHHHHHHHh
Confidence            3444444 5678999999999999766654 34444799999999999999999873

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=87.00  E-value=4.3  Score=33.64  Aligned_cols=87  Identities=16%  Similarity=0.175  Sum_probs=58.6

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++...+|+|+.+|..+-.+.+... .|++||.-+-+-..    ..            ...|+....|...+..     .
T Consensus       210 ~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~sL----~d------------tg~v~h~r~DGfk~~P-----~  267 (358)
T COG2933         210 APGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQSL----MD------------TGQVTHLREDGFKFRP-----T  267 (358)
T ss_pred             cCCceeeecccCCCccchhhhhcce-EEEEeccchhhhhh----hc------------ccceeeeeccCccccc-----C
Confidence            6899999999999999998876555 89999976522111    11            2347777777766542     2


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG  199 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g  199 (262)
                      ..+.|-.+|..+=        .+..+-..+..+|..|
T Consensus       268 r~~idWmVCDmVE--------kP~rv~~li~~Wl~nG  296 (358)
T COG2933         268 RSNIDWMVCDMVE--------KPARVAALIAKWLVNG  296 (358)
T ss_pred             CCCCceEEeehhc--------CcHHHHHHHHHHHHcc
Confidence            4678888876643        3445555566666654

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=86.16  E-value=9.4  Score=32.38  Aligned_cols=96  Identities=18%  Similarity=0.075  Sum_probs=56.1

Q ss_pred             hccCCCeEEEecCC-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           81 YARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        81 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ...++.+||-.||| .|..+..+++.....+++++.+++..+.+++.-.               ..++...-......  
T Consensus       159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~~--  221 (330)
T cd08245         159 GPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGA---------------DEVVDSGAELDEQA--  221 (330)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCC---------------cEEeccCCcchHHh--
Confidence            44677889999887 4555555555544479999999988877754211               11111110000000  


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        ..+.+|+++....-          ...+..+.+.|+++|.++..
T Consensus       222 --~~~~~d~vi~~~~~----------~~~~~~~~~~l~~~G~~i~~  255 (330)
T cd08245         222 --AAGGADVILVTVVS----------GAAAEAALGGLRRGGRIVLV  255 (330)
T ss_pred             --ccCCCCEEEECCCc----------HHHHHHHHHhcccCCEEEEE
Confidence              12458988753211          12456778899999988764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=86.01  E-value=14  Score=28.39  Aligned_cols=100  Identities=14%  Similarity=0.068  Sum_probs=61.6

Q ss_pred             cCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc-cccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-LDKV  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~  159 (262)
                      .++.+|+-|||=+-  -..+.+  .....++..|++......                  +.+ .|..-|..... +...
T Consensus        24 ~~~~~iaclstPsl--~~~l~~~~~~~~~~~Lle~D~RF~~~------------------~~~-~F~fyD~~~p~~~~~~   82 (162)
T PF10237_consen   24 LDDTRIACLSTPSL--YEALKKESKPRIQSFLLEYDRRFEQF------------------GGD-EFVFYDYNEPEELPEE   82 (162)
T ss_pred             CCCCEEEEEeCcHH--HHHHHhhcCCCccEEEEeecchHHhc------------------CCc-ceEECCCCChhhhhhh
Confidence            35679999999663  222322  244579999998743221                  112 35555654321 1111


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                        -.++||+|++.--+-    +.+-..+....+..++++++.++++++..
T Consensus        83 --l~~~~d~vv~DPPFl----~~ec~~k~a~ti~~L~k~~~kii~~Tg~~  126 (162)
T PF10237_consen   83 --LKGKFDVVVIDPPFL----SEECLTKTAETIRLLLKPGGKIILCTGEE  126 (162)
T ss_pred             --cCCCceEEEECCCCC----CHHHHHHHHHHHHHHhCccceEEEecHHH
Confidence              147999999987662    44555666677777778899999887654

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=85.84  E-value=2  Score=38.50  Aligned_cols=114  Identities=20%  Similarity=0.146  Sum_probs=69.8

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc--cccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL--DKVL  160 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~  160 (262)
                      .+..+|-+|-|.|.+...+... +...++++++.+.|++.|+..+...-         ..+..+.-.|....-.  .+..
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q---------~~r~~V~i~dGl~~~~~~~k~~  365 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ---------SDRNKVHIADGLDFLQRTAKSQ  365 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh---------hhhhhhhHhhchHHHHHHhhcc
Confidence            4567899999999887776443 44579999999999999998875210         0112222222222111  0111


Q ss_pred             CCCCCeeEEEEcc---ccccc-CCCHHH-HHHHHHHHHhccCCCcEEEEEe
Q 024797          161 ADDAPFDICSCQF---AMHYS-WSTEAR-ARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 ~~~~~fD~V~~~~---~l~~~-~~~~~~-~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ..+..||+++..-   -.|-+ ++++.- ...++..+..+|.|.|.+++..
T Consensus       366 ~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inl  416 (482)
T KOG2352|consen  366 QEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINL  416 (482)
T ss_pred             ccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEE
Confidence            1456789888532   01111 222222 3668889999999999998865

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=85.22  E-value=5.4  Score=34.51  Aligned_cols=97  Identities=18%  Similarity=0.136  Sum_probs=57.7

Q ss_pred             hccCCCeEEEecC-C-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC----ccccc
Q 024797           81 YARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG----DCYEV  154 (262)
Q Consensus        81 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~----d~~~~  154 (262)
                      ...++.+||=.|+ | .|..+..+++....++++++.+++..+.+++.+.             . -.++..    +... 
T Consensus       155 ~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lG-------------a-~~vi~~~~~~~~~~-  219 (348)
T PLN03154        155 SPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLG-------------F-DEAFNYKEEPDLDA-  219 (348)
T ss_pred             CCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcC-------------C-CEEEECCCcccHHH-
Confidence            3567899999998 3 4666666766544579999999888777764332             0 011111    1110 


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .....  ..+.+|+|+-...           ...+....+.|+++|.+++.
T Consensus       220 ~i~~~--~~~gvD~v~d~vG-----------~~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        220 ALKRY--FPEGIDIYFDNVG-----------GDMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             HHHHH--CCCCcEEEEECCC-----------HHHHHHHHHHhccCCEEEEE
Confidence            01001  1246898874321           12557788899999998753

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=85.20  E-value=7.7  Score=34.82  Aligned_cols=95  Identities=12%  Similarity=0.082  Sum_probs=52.9

Q ss_pred             eEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           87 VVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        87 ~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      +|+=+|||  ..+..+++   .....|+++|.+++.++.+++...               +.++.+|..+....... .-
T Consensus         2 ~viIiG~G--~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~---------------~~~~~gd~~~~~~l~~~-~~   63 (453)
T PRK09496          2 KIIIVGAG--QVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLD---------------VRTVVGNGSSPDVLREA-GA   63 (453)
T ss_pred             EEEEECCC--HHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcC---------------EEEEEeCCCCHHHHHHc-CC
Confidence            56777775  45554443   334479999999988777765332               67788887653221100 13


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ..+|.|++...-       ......+....+.+.|.-.+++.+
T Consensus        64 ~~a~~vi~~~~~-------~~~n~~~~~~~r~~~~~~~ii~~~   99 (453)
T PRK09496         64 EDADLLIAVTDS-------DETNMVACQIAKSLFGAPTTIARV   99 (453)
T ss_pred             CcCCEEEEecCC-------hHHHHHHHHHHHHhcCCCeEEEEE
Confidence            467877764321       222333444455554554555544

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=85.01  E-value=2.3  Score=30.99  Aligned_cols=91  Identities=11%  Similarity=0.103  Sum_probs=44.3

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      +..+|+|+|-|.=-.....++...-.|+++|+.+.   .+.                 ..+.++.-|+++..+. .   -
T Consensus        13 ~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~-----------------~g~~~v~DDif~P~l~-i---Y   68 (127)
T PF03686_consen   13 NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP-----------------EGVNFVVDDIFNPNLE-I---Y   68 (127)
T ss_dssp             -SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S------------------------STTEE---SSS--HH-H---H
T ss_pred             CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc-----------------cCcceeeecccCCCHH-H---h
Confidence            45599999999755444444433247999999986   221                 1267888888774321 1   1


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ...|+|++..       ++.+.+..+.++++.+  |.-+++..-
T Consensus        69 ~~a~lIYSiR-------PP~El~~~il~lA~~v--~adlii~pL  103 (127)
T PF03686_consen   69 EGADLIYSIR-------PPPELQPPILELAKKV--GADLIIRPL  103 (127)
T ss_dssp             TTEEEEEEES---------TTSHHHHHHHHHHH--T-EEEEE-B
T ss_pred             cCCcEEEEeC-------CChHHhHHHHHHHHHh--CCCEEEECC
Confidence            4679998755       3333444555555443  455666543

; PDB: 2K4M_A.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=84.95  E-value=7.4  Score=33.07  Aligned_cols=98  Identities=13%  Similarity=0.019  Sum_probs=56.5

Q ss_pred             hccCCCeEEEecC--CCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc-cccc-c
Q 024797           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVH-L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~-~  156 (262)
                      ...++.+||=.|+  |.|..+..+++....++++++.+++..+.+++ +.             . -.++..+- .... .
T Consensus       135 ~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~-lG-------------a-~~vi~~~~~~~~~~~  199 (325)
T TIGR02825       135 GVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK-LG-------------F-DVAFNYKTVKSLEET  199 (325)
T ss_pred             CCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cC-------------C-CEEEeccccccHHHH
Confidence            3567889998885  34666666666544579999999888777754 22             0 01111110 0100 0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .... ..+.+|+|+-...-           ..+....+.|+++|.++..
T Consensus       200 ~~~~-~~~gvdvv~d~~G~-----------~~~~~~~~~l~~~G~iv~~  236 (325)
T TIGR02825       200 LKKA-SPDGYDCYFDNVGG-----------EFSNTVIGQMKKFGRIAIC  236 (325)
T ss_pred             HHHh-CCCCeEEEEECCCH-----------HHHHHHHHHhCcCcEEEEe
Confidence            0000 22468988742211           1346788899999999853

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PLN02827 Alcohol dehydrogenase-like

Probab=84.92  E-value=6.5  Score=34.48  Aligned_cols=44  Identities=23%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             ccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 024797           82 ARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT  125 (262)
Q Consensus        82 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~  125 (262)
                      ..++.+||-.|+|. |..+..+++. +...++++|.+++..+.+++
T Consensus       191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~  236 (378)
T PLN02827        191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT  236 (378)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            46788999998764 4444445543 33358899999988887754

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=84.89  E-value=5.6  Score=34.60  Aligned_cols=94  Identities=17%  Similarity=0.118  Sum_probs=50.6

Q ss_pred             cCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe-Cccccccccccc
Q 024797           83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~  160 (262)
                      .++.+||-.|+|. |..+..+++.....+++++.+++....+.+.+.   .           ..++. .+...  ...  
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~G---a-----------~~vi~~~~~~~--~~~--  243 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLG---A-----------DSFLVSTDPEK--MKA--  243 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCC---C-----------cEEEcCCCHHH--HHh--
Confidence            4688899898875 545555555444468888877654433322221   0           01111 11001  110  


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                       ..+.+|+|+-...-          ...+....+.|++||.++..
T Consensus       244 -~~~~~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~v  277 (360)
T PLN02586        244 -AIGTMDYIIDTVSA----------VHALGPLLGLLKVNGKLITL  277 (360)
T ss_pred             -hcCCCCEEEECCCC----------HHHHHHHHHHhcCCcEEEEe
Confidence             11247888743221          12466788899999998754

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=84.81  E-value=6.9  Score=33.26  Aligned_cols=99  Identities=18%  Similarity=0.123  Sum_probs=55.7

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhcCCCe-EEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ...++.+||-.|+|. |..+..+++....+ ++.++.+++..+.+++...               -.++..+-.......
T Consensus       156 ~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~---------------~~~~~~~~~~~~~~~  220 (334)
T cd08234         156 GIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA---------------TETVDPSREDPEAQK  220 (334)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC---------------eEEecCCCCCHHHHH
Confidence            345788999998653 44555555543334 8899999888877754321               011111111110000


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                       ......+|+|+....-          ...+..+.+.|+++|.++..
T Consensus       221 -~~~~~~vd~v~~~~~~----------~~~~~~~~~~l~~~G~~v~~  256 (334)
T cd08234         221 -EDNPYGFDVVIEATGV----------PKTLEQAIEYARRGGTVLVF  256 (334)
T ss_pred             -HhcCCCCcEEEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence             0134568999853211          23566778889999998753

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=84.64  E-value=4.2  Score=34.25  Aligned_cols=81  Identities=20%  Similarity=0.063  Sum_probs=55.2

Q ss_pred             CCCeEEEecCCCCcchHHHH----hcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc--
Q 024797           84 RGDVVLDLACGKGGDLIKWD----KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD--  157 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~----~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~--  157 (262)
                      .+..||=-|.|.| ++..++    +.+. +++..|++++..+...+.....          + .+....+|+.+...-  
T Consensus        37 ~g~~vLITGgg~G-lGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~----------g-~~~~y~cdis~~eei~~  103 (300)
T KOG1201|consen   37 SGEIVLITGGGSG-LGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKI----------G-EAKAYTCDISDREEIYR  103 (300)
T ss_pred             cCCEEEEeCCCch-HHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhc----------C-ceeEEEecCCCHHHHHH
Confidence            5788999999987 555443    3333 7889999999888877766521          1 588889998764321  


Q ss_pred             ---cccCCCCCeeEEEEcccccc
Q 024797          158 ---KVLADDAPFDICSCQFAMHY  177 (262)
Q Consensus       158 ---~~~~~~~~fD~V~~~~~l~~  177 (262)
                         ....+-+..|+++.+.++.+
T Consensus       104 ~a~~Vk~e~G~V~ILVNNAGI~~  126 (300)
T KOG1201|consen  104 LAKKVKKEVGDVDILVNNAGIVT  126 (300)
T ss_pred             HHHHHHHhcCCceEEEecccccc
Confidence               11114578999998875543

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=84.61  E-value=4.2  Score=37.38  Aligned_cols=94  Identities=14%  Similarity=-0.002  Sum_probs=65.3

Q ss_pred             CCCeEEEecCCCCcchHHHHh----cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDK----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      .+++||--|.| |.++..+.+    ...++++.+|.++..+......+.+..        ...++.+.-+|+.+...-..
T Consensus       249 ~gK~vLVTGag-GSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~--------~~~~~~~~igdVrD~~~~~~  319 (588)
T COG1086         249 TGKTVLVTGGG-GSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKF--------PELKLRFYIGDVRDRDRVER  319 (588)
T ss_pred             CCCEEEEeCCC-CcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhC--------CCcceEEEecccccHHHHHH
Confidence            57788877755 667666544    466789999999999888887776311        12457889999987653222


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHH
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARAR  186 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~  186 (262)
                      ....-+.|+|+...++.|++-...++.
T Consensus       320 ~~~~~kvd~VfHAAA~KHVPl~E~nP~  346 (588)
T COG1086         320 AMEGHKVDIVFHAAALKHVPLVEYNPE  346 (588)
T ss_pred             HHhcCCCceEEEhhhhccCcchhcCHH
Confidence            224567999999999998844333343

>PLN02494 adenosylhomocysteinase

Probab=84.12  E-value=3.6  Score=37.15  Aligned_cols=88  Identities=11%  Similarity=-0.015  Sum_probs=53.1

Q ss_pred             CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .+.+|+-+|+|. |......++....+|+++|.++.....+...-                ..+  .++.+. +      
T Consensus       253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G----------------~~v--v~leEa-l------  307 (477)
T PLN02494        253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG----------------YQV--LTLEDV-V------  307 (477)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC----------------Cee--ccHHHH-H------
Confidence            688999999997 55555555443347999999886544443321                111  122111 1      


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                       ...|+|++.-.-.+         .+..+..+.+|+||+++..-
T Consensus       308 -~~ADVVI~tTGt~~---------vI~~e~L~~MK~GAiLiNvG  341 (477)
T PLN02494        308 -SEADIFVTTTGNKD---------IIMVDHMRKMKNNAIVCNIG  341 (477)
T ss_pred             -hhCCEEEECCCCcc---------chHHHHHhcCCCCCEEEEcC
Confidence             34699987433222         23366788899999987654

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=83.71  E-value=11  Score=32.49  Aligned_cols=53  Identities=25%  Similarity=0.242  Sum_probs=37.9

Q ss_pred             HHHHHhccCCCeEEEecCCC-CcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhc
Q 024797           76 VLVQLYARRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      .+......++++|.-+|||. |.....-++ .+.++++++|+++.-++.|++.-.
T Consensus       177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA  231 (366)
T COG1062         177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA  231 (366)
T ss_pred             hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC
Confidence            33444567899999999986 322222222 467789999999999999998644

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=83.37  E-value=7.2  Score=27.95  Aligned_cols=88  Identities=14%  Similarity=0.039  Sum_probs=51.5

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      ..+|+|+|.|-=......++...-.++++|+.+.   .|.                 ..+.+..-|+++....    --.
T Consensus        14 ~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~-----------------~g~~~v~DDitnP~~~----iY~   69 (129)
T COG1255          14 RGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP-----------------EGLRFVVDDITNPNIS----IYE   69 (129)
T ss_pred             CCcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc-----------------ccceEEEccCCCccHH----Hhh
Confidence            3489999998654444433333347999999885   221                 2377888888774431    113


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ..|+|.+.-       ++++....+-.+.+.+.  -.+++.
T Consensus        70 ~A~lIYSiR-------pppEl~~~ildva~aVg--a~l~I~  101 (129)
T COG1255          70 GADLIYSIR-------PPPELQSAILDVAKAVG--APLYIK  101 (129)
T ss_pred             CccceeecC-------CCHHHHHHHHHHHHhhC--CCEEEE
Confidence            457776533       44555555555655544  334443

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=83.26  E-value=9.2  Score=31.51  Aligned_cols=94  Identities=19%  Similarity=0.112  Sum_probs=54.8

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhcCCCe-EEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~-v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ...++.+||-.|||. |..+..+++..... +++++.+++..+.+++.-.            .  -.+.... ... .  
T Consensus        94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~------------~--~~~~~~~-~~~-~--  155 (277)
T cd08255          94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGP------------A--DPVAADT-ADE-I--  155 (277)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCC------------C--ccccccc-hhh-h--
Confidence            346788899888765 54555555543335 9999999888877665320            0  0000000 000 1  


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                         ....+|+|+.....          ...+....+.|+++|.++..
T Consensus       156 ---~~~~~d~vl~~~~~----------~~~~~~~~~~l~~~g~~~~~  189 (277)
T cd08255         156 ---GGRGADVVIEASGS----------PSALETALRLLRDRGRVVLV  189 (277)
T ss_pred             ---cCCCCCEEEEccCC----------hHHHHHHHHHhcCCcEEEEE
Confidence               23468988743211          12456778889999998753

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=83.12  E-value=3.8  Score=33.21  Aligned_cols=70  Identities=14%  Similarity=0.161  Sum_probs=43.6

Q ss_pred             eEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHH-HhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           87 VVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRT-RYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        87 ~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      +++=+|||. |..+...+......|+.+|.+++.++.... ...               +..+++|..+.....-. .-.
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~---------------~~~v~gd~t~~~~L~~a-gi~   65 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELD---------------THVVIGDATDEDVLEEA-GID   65 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcc---------------eEEEEecCCCHHHHHhc-CCC
Confidence            567788876 433333333343479999999998887433 333               77888988765431111 235


Q ss_pred             CeeEEEEc
Q 024797          165 PFDICSCQ  172 (262)
Q Consensus       165 ~fD~V~~~  172 (262)
                      .+|++++.
T Consensus        66 ~aD~vva~   73 (225)
T COG0569          66 DADAVVAA   73 (225)
T ss_pred             cCCEEEEe
Confidence            68888864

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=83.00  E-value=3.8  Score=36.10  Aligned_cols=72  Identities=13%  Similarity=0.050  Sum_probs=48.3

Q ss_pred             CeEEEecCCC-CcchHHH-HhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc-ccccCC
Q 024797           86 DVVLDLACGK-GGDLIKW-DKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLAD  162 (262)
Q Consensus        86 ~~vLDiGcG~-G~~~~~l-~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~~  162 (262)
                      .+||-+|||. |+..... ++.....|+..|-|.+.++.+.....             .+++.++.|+.+.+- ..++  
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-------------~~v~~~~vD~~d~~al~~li--   66 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-------------GKVEALQVDAADVDALVALI--   66 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-------------ccceeEEecccChHHHHHHH--
Confidence            4799999975 4444433 33454689999999988888876543             258889999877632 1222  


Q ss_pred             CCCeeEEEEcc
Q 024797          163 DAPFDICSCQF  173 (262)
Q Consensus       163 ~~~fD~V~~~~  173 (262)
                       ..+|+|+...
T Consensus        67 -~~~d~VIn~~   76 (389)
T COG1748          67 -KDFDLVINAA   76 (389)
T ss_pred             -hcCCEEEEeC
Confidence             3458888654

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=82.98  E-value=12  Score=33.55  Aligned_cols=72  Identities=13%  Similarity=-0.072  Sum_probs=45.5

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...+|+=+|+|.  ++..+++   .....++.+|.+++.++..++...              .+.++.+|..+.......
T Consensus       230 ~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~--------------~~~~i~gd~~~~~~L~~~  293 (453)
T PRK09496        230 PVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEELP--------------NTLVLHGDGTDQELLEEE  293 (453)
T ss_pred             CCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCC--------------CCeEEECCCCCHHHHHhc
Confidence            356788888864  4444433   334479999999998888776542              266788888654321111


Q ss_pred             CCCCCeeEEEEc
Q 024797          161 ADDAPFDICSCQ  172 (262)
Q Consensus       161 ~~~~~fD~V~~~  172 (262)
                       .-..+|.|++.
T Consensus       294 -~~~~a~~vi~~  304 (453)
T PRK09496        294 -GIDEADAFIAL  304 (453)
T ss_pred             -CCccCCEEEEC
Confidence             23567887753

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=82.56  E-value=7.7  Score=32.85  Aligned_cols=95  Identities=12%  Similarity=0.062  Sum_probs=55.6

Q ss_pred             ccCCCeEEEecCC--CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--cc
Q 024797           82 ARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LD  157 (262)
Q Consensus        82 ~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~  157 (262)
                      ..++.+||=.|++  .|..+..+++....++++++.+++..+.+++ +.             . -.++...-.++.  ..
T Consensus       141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~-~G-------------a-~~vi~~~~~~~~~~v~  205 (329)
T cd08294         141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE-LG-------------F-DAVFNYKTVSLEEALK  205 (329)
T ss_pred             CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH-cC-------------C-CEEEeCCCccHHHHHH
Confidence            4678899888743  3556666666544479999998888888766 22             0 111111101110  00


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      ..  ....+|+|+-...           ...+....+.|+++|.++.
T Consensus       206 ~~--~~~gvd~vld~~g-----------~~~~~~~~~~l~~~G~iv~  239 (329)
T cd08294         206 EA--APDGIDCYFDNVG-----------GEFSSTVLSHMNDFGRVAV  239 (329)
T ss_pred             HH--CCCCcEEEEECCC-----------HHHHHHHHHhhccCCEEEE
Confidence            01  1246898874221           1345778889999999875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>TIGR00936 ahcY adenosylhomocysteinase

Probab=82.44  E-value=6.1  Score=35.13  Aligned_cols=41  Identities=10%  Similarity=0.056  Sum_probs=29.0

Q ss_pred             cCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHH
Q 024797           83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDC  123 (262)
Q Consensus        83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a  123 (262)
                      ..+.+|+-+|+|. |......++....+|+++|.++.....+
T Consensus       193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A  234 (406)
T TIGR00936       193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEA  234 (406)
T ss_pred             CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHH
Confidence            3688999999997 5555555554445799999888644333

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=82.39  E-value=11  Score=31.33  Aligned_cols=110  Identities=14%  Similarity=0.064  Sum_probs=59.4

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc------CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (262)
                      .+...++|+|||.|.++..++..      ....++.||-...-. .+-.++...        .....++=+..|+.++.+
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~--------~~~~~~~R~riDI~dl~l   87 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKD--------ESEPKFERLRIDIKDLDL   87 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhcc--------CCCCceEEEEEEeeccch
Confidence            56779999999999988887652      234689999755322 222222210        001346667888888776


Q ss_pred             ccccCCC-CCeeEEEEcccccccCCCHHHHHHHHHHHHhcc-------CCCcEEEEEe
Q 024797          157 DKVLADD-APFDICSCQFAMHYSWSTEARARRALANVSALL-------RPGGTFIGTM  206 (262)
Q Consensus       157 ~~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L-------~~gG~li~~~  206 (262)
                      ..+.... ..-.+|.   .--|++-...|  ..|+-+.+..       +..|.++..+
T Consensus        88 ~~~~~~~~~~~~vv~---isKHLCG~ATD--laLRcl~~~~~~~~~~~~~~gi~iA~C  140 (259)
T PF05206_consen   88 SKLPELQNDEKPVVA---ISKHLCGAATD--LALRCLLNSQKLSEGNGSVRGIVIAPC  140 (259)
T ss_pred             hhcccccCCCCcEEE---EEccccccchh--HHHHhhccCccccccCCccCeEEEEeC
Confidence            4433211 1112222   12344333333  3444444444       3578777665

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=82.36  E-value=2.2  Score=35.08  Aligned_cols=57  Identities=16%  Similarity=0.218  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhc
Q 024797           68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        68 ~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      ++..|+...+...   +..+++|+-||+|..+..+.. ....++.-|+++..+...+..+.
T Consensus         7 ~l~~~I~~~ip~~---~~~~~vepF~G~g~V~~~~~~-~~~~vi~ND~~~~l~~~~~~~l~   63 (260)
T PF02086_consen    7 KLAKWIIELIPKN---KHKTYVEPFAGGGSVFLNLKQ-PGKRVIINDINPDLINFWKAVLK   63 (260)
T ss_dssp             GGHHHHHHHS-S----S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC---CCCEEEEEecchhHHHHHhcc-cccceeeeechHHHHHHHHHHHh
Confidence            4445544443211   678999999999987776643 55679999999988877774443

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=82.21  E-value=16  Score=30.84  Aligned_cols=91  Identities=19%  Similarity=0.078  Sum_probs=54.0

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ...++.+||=.|+|. |..+..+++....++++++.+++..+.+++ +.               +... .+.... .   
T Consensus       152 ~~~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g---------------~~~~-~~~~~~-~---  210 (319)
T cd08242         152 PITPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LG---------------VETV-LPDEAE-S---  210 (319)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cC---------------CcEE-eCcccc-c---
Confidence            446788898887643 333334444444468999999988888876 32               1110 111111 1   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                        ....+|+|+-...-          ...+..+.+.|+++|.++.
T Consensus       211 --~~~~~d~vid~~g~----------~~~~~~~~~~l~~~g~~v~  243 (319)
T cd08242         211 --EGGGFDVVVEATGS----------PSGLELALRLVRPRGTVVL  243 (319)
T ss_pred             --cCCCCCEEEECCCC----------hHHHHHHHHHhhcCCEEEE
Confidence              34568999753211          2245667788899999886

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=81.87  E-value=4.9  Score=35.96  Aligned_cols=86  Identities=12%  Similarity=0.064  Sum_probs=51.3

Q ss_pred             CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .+.+|+-+|+|. |......++....+|+.+|.++.....+...              +  ..  ..++.+.        
T Consensus       211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~--------------G--~~--v~~l~ea--------  264 (425)
T PRK05476        211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD--------------G--FR--VMTMEEA--------  264 (425)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc--------------C--CE--ecCHHHH--------
Confidence            688999999996 5444444444444899999988655444321              1  11  1122211        


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHH-HHHhccCCCcEEEEE
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALA-NVSALLRPGGTFIGT  205 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~-~~~~~L~~gG~li~~  205 (262)
                      -...|+|+..-.-          ..++. ...+.+|+|++++..
T Consensus       265 l~~aDVVI~aTG~----------~~vI~~~~~~~mK~GailiNv  298 (425)
T PRK05476        265 AELGDIFVTATGN----------KDVITAEHMEAMKDGAILANI  298 (425)
T ss_pred             HhCCCEEEECCCC----------HHHHHHHHHhcCCCCCEEEEc
Confidence            1357999764321          12343 577889999987654

>TIGR00518 alaDH alanine dehydrogenase

Probab=81.39  E-value=2.7  Score=36.94  Aligned_cols=44  Identities=14%  Similarity=0.098  Sum_probs=29.1

Q ss_pred             CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY  127 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~  127 (262)
                      ++.+|+=+|+|. |..+...+......|+.+|.+++.++.+...+
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~  210 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF  210 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc
Confidence            456799999984 54555544433337999999987766655443

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=81.03  E-value=8.4  Score=32.90  Aligned_cols=101  Identities=13%  Similarity=0.007  Sum_probs=53.8

Q ss_pred             CCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ++.+|+-+|+|. |......+.. +...++.+|.+++......+.+.               ......+  ++..     
T Consensus       177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g---------------~~~~~~~--~~~~-----  234 (311)
T cd05213         177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELG---------------GNAVPLD--ELLE-----  234 (311)
T ss_pred             cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC---------------CeEEeHH--HHHH-----
Confidence            678999999975 5444444333 44579999998765433333332               1111111  1110     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHH
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII  213 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~  213 (262)
                      .-...|+|+..-.-.+       +...+..+.+....+|.+++....+..+-
T Consensus       235 ~l~~aDvVi~at~~~~-------~~~~~~~~~~~~~~~~~~viDlavPrdi~  279 (311)
T cd05213         235 LLNEADVVISATGAPH-------YAKIVERAMKKRSGKPRLIVDLAVPRDIE  279 (311)
T ss_pred             HHhcCCEEEECCCCCc-------hHHHHHHHHhhCCCCCeEEEEeCCCCCCc
Confidence            1134799987654432       12333333333334678888876654433

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=80.75  E-value=14  Score=32.22  Aligned_cols=45  Identities=27%  Similarity=0.322  Sum_probs=31.6

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHH
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT  125 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~  125 (262)
                      ...++.+||=.|+|. |..+..+++. +...++++|.+++.++.+++
T Consensus       183 ~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~  229 (368)
T cd08300         183 KVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK  229 (368)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            346788999998764 4444445543 33369999999998888764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=80.59  E-value=3.4  Score=35.16  Aligned_cols=49  Identities=20%  Similarity=0.192  Sum_probs=34.9

Q ss_pred             HhccCCCeEEEecCCCCcchH-HHHh-cCCCeEEEEeCChhHHHHHHHHhc
Q 024797           80 LYARRGDVVLDLACGKGGDLI-KWDK-AKIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~-~l~~-~~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      ....++++|.-+|+|.=.++. .-++ .+..+++|||++++-.+.|++.-.
T Consensus       188 Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGa  238 (375)
T KOG0022|consen  188 AKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGA  238 (375)
T ss_pred             cccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCc
Confidence            345688889889888622322 2222 467789999999999999987543

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=80.41  E-value=18  Score=30.24  Aligned_cols=88  Identities=11%  Similarity=0.002  Sum_probs=49.3

Q ss_pred             eEEEecCCC-C-cchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           87 VVLDLACGK-G-GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        87 ~vLDiGcG~-G-~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      +|.=||+|. | .++..+.+.+ ..|+++|.+++.++.+.+...               +.....+. +        .-.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g-~~V~~~d~~~~~~~~a~~~g~---------------~~~~~~~~-~--------~~~   56 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIERGL---------------VDEASTDL-S--------LLK   56 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCC---------------cccccCCH-h--------Hhc
Confidence            466678775 2 2333333333 379999999988877765311               11111111 1        113


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ..|+|+..-       +......+++++...++++. ++..+.
T Consensus        57 ~aDlVilav-------p~~~~~~~~~~l~~~l~~~~-ii~d~~   91 (279)
T PRK07417         57 DCDLVILAL-------PIGLLLPPSEQLIPALPPEA-IVTDVG   91 (279)
T ss_pred             CCCEEEEcC-------CHHHHHHHHHHHHHhCCCCc-EEEeCc
Confidence            468888654       33445667888888887764 444433

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=80.39  E-value=5  Score=34.17  Aligned_cols=97  Identities=15%  Similarity=0.292  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHHHhccCCCe--EEEecCCCCcchHHHHhc---CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCC
Q 024797           68 KLNNWIKSVLVQLYARRGDV--VLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF  142 (262)
Q Consensus        68 ~~~~~~~~~l~~~~~~~~~~--vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~  142 (262)
                      ..-.|+..+|..-...++..  =+|||.|.  ..++.+..   ..-..+++|+.+..+..|+.+..+.+        +..
T Consensus        84 nYihwI~DLLss~q~~k~~i~~GiDIgtga--sci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~--------lss  153 (419)
T KOG2912|consen   84 NYIHWIEDLLSSQQSDKSTIRRGIDIGTGA--SCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNN--------LSS  153 (419)
T ss_pred             hhHHHHHHHhhcccCCCcceeeeeeccCch--hhhHHhhhchhccceeeeeeccccccchhhccccccc--------ccc
Confidence            45567777766543223333  26777665  34443321   23358899999999999999887432        333


Q ss_pred             CeEEEeCccccccccccc--CCCCCeeEEEEccc
Q 024797          143 PARLICGDCYEVHLDKVL--ADDAPFDICSCQFA  174 (262)
Q Consensus       143 ~v~~~~~d~~~~~~~~~~--~~~~~fD~V~~~~~  174 (262)
                      .+.+++-....-.+.+..  .++..||.+.|+--
T Consensus       154 ~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNPP  187 (419)
T KOG2912|consen  154 LIKVVKVEPQKTLLMDALKEESEIIYDFCMCNPP  187 (419)
T ss_pred             ceeeEEecchhhcchhhhccCccceeeEEecCCc
Confidence            444444322111111100  02445888887653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	262
1ri1_A	298	Structure And Mechanism Of Mrna Cap (Guanine N-7) M		8e-35
3bgv_A	313	Crystal Structure Of Mrna Cap Guanine-N7 Methyltran		1e-33
2vdw_A	302	Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12		2e-06
1ve3_A	227	Crystal Structure Of Ph0226 Protein From Pyrococcus		2e-04

>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7) Methyltransferase Length = 298

Iteration: 1
 Score =  143 bits (361), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 87/227 (38%), Positives = 132/227 (58%), Gaps = 20/227 (8%)
Query: 30  FLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVL 89
           F +D++ +    ++ +HY+    +  E R+ S  I+++  NN+IK+ L++LY +RGD VL
Sbjct: 10  FRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVL 69
Query: 90  DLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149
           DL CGKGGDL+K+++A IG Y G+DIAE SI D R R    A + +RR K  F A+    
Sbjct: 70  DLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVR----ARNMKRRFKVFFRAQ---- 121
Query: 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209
           D Y  H+D        FD+ S QF+ HY++ST      A  N++  LRPGG FI T+P  
Sbjct: 122 DSYGRHMDL----GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177
Query: 210 NVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHL 256
           +VI+++ ++     + N  Y I L E+  D   +S R    +Y+F L
Sbjct: 178 DVILERYKQGR---MSNDFYKIEL-EKMEDVPMESVR----EYRFTL 216

>pdb|3BGV|A Chain A, Crystal Structure Of Mrna Cap Guanine-N7 Methyltransferase In Complex With Sah Length = 313

Iteration: 1
 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 81/207 (39%), Positives = 112/207 (54%), Gaps = 20/207 (9%)
Query: 61  SPIIHLKKLNNWIKSVLVQLY-------ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI 113
           S I +L+  NNW+KSVL+  +        +R   VLDL CGKGGDL+KW K +I   V  
Sbjct: 4   SRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCT 63
Query: 114 DIAEGSIEDCRTRYNGDADHHQRR-KKFSFPARLICGDCY-EVHLDKVLADDAPFDICSC 171
           DIA+ S++ C+ RY    D   RR  ++ F A  I  D   E+ +DK       FDICSC
Sbjct: 64  DIADVSVKQCQQRYE---DMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSC 120
Query: 172 QFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWI 231
           QF  HYS+ +  +A   L N    L PGG FIGT P++  +I++L   E  + GN +Y +
Sbjct: 121 QFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTV 180
Query: 232 RLDEEFADKKFKSSRP-FGIQYKFHLE 257
           +  +       K   P FG +Y F+LE
Sbjct: 181 KFQK-------KGDYPLFGCKYDFNLE 200

>pdb|2VDW|A Chain A, Guanosine N7 Methyl-Transferase Sub-Complex (D1-D12) Of The Vaccinia Virus Mrna Capping Enzyme Length = 302

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 69/154 (44%), Gaps = 10/154 (6%)
Query: 69  LNNWIKSVLVQLYARRGDV-------VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIE 121
           L+N++K++L+ +Y  +  +       VL +  G G DL K+   +I   V  D    +I 
Sbjct: 26  LSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIA 85
Query: 122 DCRTRYNG-DADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
               RYN  ++    +  KF +    I  D +   + +V      F+I   QFA+HYS+ 
Sbjct: 86  RGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY-FGKFNIIDWQFAIHYSFH 144
Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIK 214
               A   + N+S L   GG  + T  D + + K
Sbjct: 145 PRHYA-TVMNNLSELTASGGKVLITTMDGDKLSK 177

>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 66/157 (42%), Gaps = 25/157 (15%)
Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQ 135
           L+  Y ++   VLDLACG GG    +     G+  VG+DI+E  I   R       ++ +
Sbjct: 31  LLXKYXKKRGKVLDLACGVGG--FSFLLEDYGFEVVGVDISEDXIRKAR-------EYAK 81
Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFD-ICSCQFAMHYSWSTEARARRALANVSA 194
            R+        I GD       K+  +D  FD +      +H+         +    V  
Sbjct: 82  SRES---NVEFIVGDA-----RKLSFEDKTFDYVIFIDSIVHFE---PLELNQVFKEVRR 130
Query: 195 LLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWI 231
           +L+P G FI    D   ++ +L+  E L +G   YWI
Sbjct: 131 VLKPSGKFIXYFTDLRELLPRLK--ESLVVGQK-YWI 164

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	8e-60
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	3e-55
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	2e-52
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	8e-15
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	8e-14
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	1e-13
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	2e-13
3ocj_A	305	Putative exported protein; structural genomics, PS	4e-13
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	5e-13
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	7e-13
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	9e-13
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	3e-12
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	3e-12
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	5e-12
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	5e-12
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	5e-12
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-11
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	2e-11
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	2e-11
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	6e-11
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	7e-11
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	8e-11
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	1e-10
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	1e-10
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	3e-10
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	5e-10
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	7e-10
3ege_A	261	Putative methyltransferase from antibiotic biosyn	9e-10
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	2e-09
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	2e-09
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	4e-09
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	6e-09
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	7e-09
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	1e-08
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	8e-08
3lcc_A	235	Putative methyl chloride transferase; halide methy	8e-08
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	8e-08
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	1e-07
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	1e-07
1xxl_A	239	YCGJ protein; structural genomics, protein structu	2e-07
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	2e-07
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-07
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	2e-07
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	2e-07
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	2e-07
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	3e-07
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	4e-07
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	5e-07
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	5e-07
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	5e-07
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	5e-07
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	7e-07
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	7e-07
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	1e-06
3i9f_A	170	Putative type 11 methyltransferase; structural gen	1e-06
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	2e-06
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	3e-06
3f4k_A	257	Putative methyltransferase; structural genomics, P	3e-06
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	4e-06
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	9e-06
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	4e-05
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	1e-04
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	1e-04
3cc8_A	230	Putative methyltransferase; structural genomics, j	2e-04
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	2e-04
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	3e-04
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	3e-04

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score =  190 bits (484), Expect = 8e-60
 Identities = 80/228 (35%), Positives = 121/228 (53%), Gaps = 20/228 (8%)

Query: 30  FLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVL 89
           F +D++ +    ++ +HY+    +  E R+ S  I+++  NN+IK+ L++LY +RGD VL
Sbjct: 10  FRKDQAMEGKKEEIREHYNSIRERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVL 69

Query: 90  DLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149
           DL CGKGGDL+K+++A IG Y G+DIAE SI D R R            K  F       
Sbjct: 70  DLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARN--------MKRRFKVFFRAQ 121

Query: 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209
           D Y  H+D        FD+ S QF+ HY++ST      A  N++  LRPGG FI T+P  
Sbjct: 122 DSYGRHMDL----GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177

Query: 210 NVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLE 257
           +VI+++ ++     + N  Y I L     +K          +Y+F L 
Sbjct: 178 DVILERYKQGR---MSNDFYKIEL-----EKMEDVPMESVREYRFTLL 217

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score =  179 bits (454), Expect = 3e-55
 Identities = 45/222 (20%), Positives = 82/222 (36%), Gaps = 19/222 (8%)

Query: 44  ADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARR-------GDVVLDLACGKG 96
           AD +      +    +      L  L+N++K++L+ +Y  +          VL +  G G
Sbjct: 2   ADKFRLNPEVSYFTNK-RTRGPLGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNG 60

Query: 97  GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK-KFSFPARLICGDCYEVH 155
            DL K+   +I   V  D    +I     RYN      + +  KF +    I  D +   
Sbjct: 61  ADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSS 120

Query: 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK 215
           + +V      F+I   QFA+HYS+     A   + N+S L   GG  + T  D + + K 
Sbjct: 121 VREVF-YFGKFNIIDWQFAIHYSFHPRHYA-TVMNNLSELTASGGKVLITTMDGDKLSKL 178

Query: 216 LREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLE 257
             +          + I  +   ++      +    +   +  
Sbjct: 179 TDK--------KTFIIHKNLPSSENYMSVEKIADDRIVVYNP 212

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score =  172 bits (436), Expect = 2e-52
 Identities = 77/205 (37%), Positives = 109/205 (53%), Gaps = 16/205 (7%)

Query: 61  SPIIHLKKLNNWIKSVLVQLYAR-------RGDVVLDLACGKGGDLIKWDKAKIGYYVGI 113
           S I +L+  NNW+KSVL+  +         R   VLDL CGKGGDL+KW K +I   V  
Sbjct: 4   SRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCT 63

Query: 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLADDAPFDICSCQ 172
           DIA+ S++ C+ RY      ++R  ++ F A  I  D  +  L DK       FDICSCQ
Sbjct: 64  DIADVSVKQCQQRYEDM--KNRRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQ 121

Query: 173 FAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIR 232
           F  HYS+ +  +A   L N    L PGG FIGT P++  +I++L   E  + GN +Y ++
Sbjct: 122 FVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVK 181

Query: 233 LDEEFADKKFKSSRPFGIQYKFHLE 257
             ++           FG +Y F+LE
Sbjct: 182 FQKK------GDYPLFGCKYDFNLE 200

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 71.0 bits (174), Expect = 8e-15
 Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 71  NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNG 129
           ++++ +  +   R    VLDLACG G   ++   A+ GY V G+D+ E  +   R     
Sbjct: 28  DFVEEIFKEDAKREVRRVLDLACGTGIPTLEL--AERGYEVVGLDLHEEMLRVAR----- 80

Query: 130 DADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRA 188
                ++ K+ +     + GD  E+           FD  +  F  + Y    E   R+ 
Sbjct: 81  -----RKAKERNLKIEFLQGDVLEIAFKN------EFDAVTMFFSTIMY--FDEEDLRKL 127

Query: 189 LANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEF 237
            + V+  L+PGG FI   P      +    V     G     I    E 
Sbjct: 128 FSKVAEALKPGGVFITDFPCWFYGGRDGPVVWNEQKGEEKLVIMDWREV 176

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 67.1 bits (164), Expect = 8e-14
 Identities = 32/145 (22%), Positives = 49/145 (33%), Gaps = 24/145 (16%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
           L+   A RG  +LD  CG+G        +K G+ V G D+    I+  +  +        
Sbjct: 39  LIDAMAPRGAKILDAGCGQGRIGGYL--SKQGHDVLGTDLDPILIDYAKQDFPE------ 90

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
                   AR + GD     +      +  FD+      +   +  E     ALAN+   
Sbjct: 91  --------ARWVVGDLSVDQI-----SETDFDLIVSAGNVMG-FLAEDGREPALANIHRA 136

Query: 196 LRPGGTF-IGTMPDANVIIKKLREV 219
           L   G   IG       +     EV
Sbjct: 137 LGADGRAVIGFGAGRGWVFGDFLEV 161

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 67.8 bits (166), Expect = 1e-13
 Identities = 26/158 (16%), Positives = 53/158 (33%), Gaps = 21/158 (13%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
                    D  LDLACG G                 +D+++  + +             
Sbjct: 30  KCVENNLVFDDYLDLACGTGNLTENL--CPKFKNTWAVDLSQEMLSEAE----------N 77

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSA 194
           + +      RL C D   +++++       FD+ +C   + +Y        ++    VS 
Sbjct: 78  KFRSQGLKPRLACQDISNLNINR------KFDLITCCLDSTNY-IIDSDDLKKYFKAVSN 130

Query: 195 LLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIR 232
            L+ GG FI  +     + + L   +     + V++  
Sbjct: 131 HLKEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYW 168

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 66.4 bits (162), Expect = 2e-13
 Identities = 29/194 (14%), Positives = 52/194 (26%), Gaps = 34/194 (17%)

Query: 34  ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLAC 93
           E   +F    A  Y        +       I  K++    + +L  +  +    VL+   
Sbjct: 4   EFNGLFDE-WAHTY--------DSFVQGEDIQYKEVFAHYEDILEDVVNKSFGNVLEFGV 54

Query: 94  GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE 153
           G  G+L            GI+ +       + +   +               +  GD   
Sbjct: 55  GT-GNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKE-------------FSITEGDFLS 100

Query: 154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI---GTMPDAN 210
                        D     +A H    T+     A+A  S LL  GG  +       D +
Sbjct: 101 ------FEVPTSIDTIVSTYAFH--HLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQD 152

Query: 211 VIIKKLREVEGLAI 224
              K +   +    
Sbjct: 153 AYDKTVEAAKQRGF 166

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 67.0 bits (163), Expect = 4e-13
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 17/129 (13%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHH 134
            +Q + R G VV  + CG   +L+  D +       VGID    +++             
Sbjct: 111 ALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLA------- 163

Query: 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA 194
                 +    L   D ++      L     +D+ +      Y    +AR          
Sbjct: 164 -AGHALAGQITLHRQDAWK------LDTREGYDLLTSNGLNIYE-PDDARVTELYRRFWQ 215

Query: 195 LLRPGGTFI 203
            L+PGG  +
Sbjct: 216 ALKPGGALV 224

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 65.6 bits (160), Expect = 5e-13
 Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 33/173 (19%)

Query: 33  DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLA 92
            E  + F   V+  Y  +       R+  P       + +  SV +         +LDL 
Sbjct: 4   SEIKRKFD-AVSGKYDEQ------RRKFIPCFD----DFYGVSVSIASVDTENPDILDLG 52

Query: 93  CGKGGDLIKW--DKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150
            G  G L  +  +K     +  +D++E  +E  + R+ G+              + I  D
Sbjct: 53  AG-TGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL-----------KVKYIEAD 100

Query: 151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
             +   ++       +D+     ++H     +   +       ++L+  G FI
Sbjct: 101 YSKYDFEE------KYDMVVSALSIH--HLEDEDKKELYKRSYSILKESGIFI 145

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 65.5 bits (160), Expect = 7e-13
 Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 25/129 (19%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
           LV+        +LD+ACG G  L  +   K      G++++E  +   R R         
Sbjct: 33  LVRSRTPEASSLLDVACGTGTHLEHF--TKEFGDTAGLELSEDMLTHARKRLPD------ 84

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSA 194
                   A L  GD  +  L +       F      F ++ Y   T      A+A+ + 
Sbjct: 85  --------ATLHQGDMRDFRLGR------KFSAVVSMFSSVGY-LKTTEELGAAVASFAE 129

Query: 195 LLRPGGTFI 203
            L PGG  +
Sbjct: 130 HLEPGGVVV 138

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 65.7 bits (160), Expect = 9e-13
 Identities = 40/237 (16%), Positives = 72/237 (30%), Gaps = 24/237 (10%)

Query: 3   RGHRGSPSSSEGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREASP 62
             H        G  + + ++ P    H     ++      + D Y      T  +     
Sbjct: 7   HHHHSGGLVPRGSMSNQLERGPVRTPHADVLLASVGERGVLCDFYDEGAADTYRD----- 61

Query: 63  IIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIE 121
           +I      +  +             VL+LA G G     +    +G+ V  ++++   + 
Sbjct: 62  LIQDADGTSEAR-EFATRTGPVSGPVLELAAGMGRLTFPF--LDLGWEVTALELSTSVLA 118

Query: 122 DCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWS 180
             R R        + R        L+ GD     LDK       F        +++    
Sbjct: 119 AFRKRLAEAPADVRDR------CTLVQGDMSAFALDK------RFGTVVISSGSINEL-- 164

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEF 237
            EA  R   A+V   L PGG F+ ++  +     +  E +    G S     L    
Sbjct: 165 DEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRH 221

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 63.7 bits (155), Expect = 3e-12
 Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 21/120 (17%)

Query: 84  RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143
            G  ++DL CG G       +    Y +G+D++E  +   R                   
Sbjct: 43  GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG------------ 90

Query: 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
                 D  ++HL         FD+     A+HY         R    V   L PGG F+
Sbjct: 91  ITYERADLDKLHL-----PQDSFDLAYSSLALHYV----EDVARLFRTVHQALSPGGHFV 141

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 64.3 bits (156), Expect = 3e-12
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 28/178 (15%)

Query: 31  LEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLD 90
           + D+     A +V   Y   T     E              +   +L  L       VLD
Sbjct: 18  IPDQYADGEAARVWQLYIGDTRSRTAE--------------YKAWLLGLLRQHGCHRVLD 63

Query: 91  LACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149
           +ACG G D I     + G+ V  +D ++  ++               R+K     + +  
Sbjct: 64  VACGTGVDSIML--VEEGFSVTSVDASDKMLKYALKER-------WNRRKEPAFDKWVIE 114

Query: 150 DCYEVHLDKVLADDAPFDICSCQFA----MHYSWSTEARARRALANVSALLRPGGTFI 203
           +   + LDK +     FD   C       +  S   ++  R AL N+++++RPGG  +
Sbjct: 115 EANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 63.0 bits (153), Expect = 5e-12
 Identities = 45/225 (20%), Positives = 82/225 (36%), Gaps = 39/225 (17%)

Query: 42  KVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
           +V   Y+   +Q    R              ++ +L++ Y ++   VLDLACG GG    
Sbjct: 8   RVFPTYTDINSQEYRSRIE-----------TLEPLLMK-YMKKRGKVLDLACGVGGFSFL 55

Query: 102 WDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160
                 G+ V G+DI+E  I   R          +  K        I GD  ++      
Sbjct: 56  L--EDYGFEVVGVDISEDMIRKAR----------EYAKSRESNVEFIVGDARKLSF---- 99

Query: 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVE 220
            +D  FD      ++ + +       +    V  +L+P G FI    D   ++ +L+E  
Sbjct: 100 -EDKTFDYVIFIDSIVH-F-EPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKESL 156

Query: 221 GLAIGNSVYWIRLDE-------EFADKKFKSSRPFGIQYKFHLEV 258
            +     +  +  D+       EF  ++      F +  K  +E+
Sbjct: 157 VVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVEL 201

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 63.3 bits (154), Expect = 5e-12
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 25/129 (19%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
           LV+ ++ +   +LD+ACG G  L     A     V G++++   +   R R         
Sbjct: 43  LVRRHSPKAASLLDVACGTGMHLRHL--ADSFGTVEGLELSADMLAIARRRNPD------ 94

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSA 194
                   A L  GD  +  L +       F   +C F ++ +  + +A    AL   +A
Sbjct: 95  --------AVLHHGDMRDFSLGR------RFSAVTCMFSSIGH-LAGQAELDAALERFAA 139

Query: 195 LLRPGGTFI 203
            + P G  +
Sbjct: 140 HVLPDGVVV 148

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 62.8 bits (153), Expect = 5e-12
 Identities = 26/166 (15%), Positives = 54/166 (32%), Gaps = 22/166 (13%)

Query: 78  VQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQR 136
           V      G  + D+ CG G   +        Y V G+D++E  +E  +          ++
Sbjct: 27  VLEQVEPGKRIADIGCGTGTATLLLAD---HYEVTGVDLSEEMLEIAQ----------EK 73

Query: 137 RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSAL 195
             + +        D  E+ L +      P D  +    +++Y   TEA  ++   + + L
Sbjct: 74  AMETNRHVDFWVQDMRELELPE------PVDAITILCDSLNYLQ-TEADVKQTFDSAARL 126

Query: 196 LRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKK 241
           L  GG  +  +     +                 +I   +   +  
Sbjct: 127 LTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPL 172

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 61.5 bits (149), Expect = 2e-11
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 21/120 (17%)

Query: 84  RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143
               VLDL CG G   I   +      +GID++E  + + + +                 
Sbjct: 44  NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVC---------- 93

Query: 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
                    ++ +     +   +++     A+HY     A        V   L+  G+FI
Sbjct: 94  --YEQKAIEDIAI-----EPDAYNVVLSSLALHY----IASFDDICKKVYINLKSSGSFI 142

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 31/137 (22%), Positives = 44/137 (32%), Gaps = 25/137 (18%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
           + + +L  L  + G+ +LDL CG G    K         +G D A   IE  R  Y    
Sbjct: 45  YGEDLLQLLNPQPGEFILDLGCGTGQLTEKI-AQSGAEVLGTDNAATMIEKARQNYPH-- 101

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
                             D            D P D       +H  W  E  A  A+A+
Sbjct: 102 ------------LHFDVADARN------FRVDKPLDAVFSNAMLH--WVKEPEA--AIAS 139

Query: 192 VSALLRPGGTFIGTMPD 208
           +   L+ GG F+     
Sbjct: 140 IHQALKSGGRFVAEFGG 156

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 60.7 bits (147), Expect = 2e-11
 Identities = 29/152 (19%), Positives = 56/152 (36%), Gaps = 18/152 (11%)

Query: 56  EEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW--DKAKIGYYVGI 113
           EE E    ++ ++L   + +VL  + A++   V+DL CG  G+L+             G+
Sbjct: 5   EETEKKLNLNQQRLG-TVVAVLKSVNAKK---VIDLGCG-EGNLLSLLLKDKSFEQITGV 59

Query: 114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF 173
           D++   +E  + R   D     +RK+      L         L       + +D  +   
Sbjct: 60  DVSYSVLERAKDRLKIDRLPEMQRKR----ISLFQSS-----LVYRDKRFSGYDAATVIE 110

Query: 174 AMHYSWSTEARARRALANVSALLRPGGTFIGT 205
            + +    E R +     +    RP    + T
Sbjct: 111 VIEH--LDENRLQAFEKVLFEFTRPQTVIVST 140

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 59.4 bits (144), Expect = 6e-11
 Identities = 18/179 (10%), Positives = 46/179 (25%), Gaps = 37/179 (20%)

Query: 33  DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLA 92
           D+ +K ++              +   +              + ++         V+LD+ 
Sbjct: 3   DDVSKAYSS-PTFDAEALLGTVISAED------------PDRVLIEPWATGVDGVILDVG 49

Query: 93  CGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151
            G G        A +G+ + G++ A   +E  R  +                     G  
Sbjct: 50  SGTGRWTGHL--ASLGHQIEGLEPATRLVELARQTHPS--------------VTFHHGTI 93

Query: 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210
            ++           +      +++            AL  +   +  GG  + +     
Sbjct: 94  TDLSDS-----PKRWAGLLAWYSLI--HMGPGELPDALVALRMAVEDGGGLLMSFFSGP 145

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 59.4 bits (144), Expect = 7e-11
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 22/130 (16%)

Query: 74  KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH 133
           +++L+ +  R+ + VLDL CG  G L++    +    VG+D     ++  R    G+   
Sbjct: 42  QAILLAILGRQPERVLDLGCG-EGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHL 100

Query: 134 HQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS 193
                             Y    +  +     +D+    FA+ +           L+ + 
Sbjct: 101 AS----------------YAQLAEAKVPVGKDYDLICANFALLH-----QDIIELLSAMR 139

Query: 194 ALLRPGGTFI 203
            LL PGG  +
Sbjct: 140 TLLVPGGALV 149

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 59.4 bits (144), Expect = 8e-11
 Identities = 21/171 (12%), Positives = 50/171 (29%), Gaps = 28/171 (16%)

Query: 33  DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLA 92
            E+ K F +K A +    +                 +   I   ++  +       +D+ 
Sbjct: 3   SENKKKFDKKGAKNMDEISK-----------TLFAPIYPIIAENIINRFGITAGTCIDIG 51

Query: 93  CGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY 152
            G G   I   K        +D ++   E                   +   +++ GD +
Sbjct: 52  SGPGALSIALAKQSDFSIRALDFSKHMNEIALKN--------IADANLNDRIQIVQGDVH 103

Query: 153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
            + +     +D   D+   + ++ +          A   +  +L+ GG   
Sbjct: 104 NIPI-----EDNYADLIVSRGSVFFW----EDVATAFREIYRILKSGGKTY 145

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 31/153 (20%), Positives = 56/153 (36%), Gaps = 18/153 (11%)

Query: 56  EEREASPIIHLKKL-NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW--DKAKIGYYVG 112
           EE      I L +   N + + L Q  ARR   V+DL CG  G+L+K     +      G
Sbjct: 3   EEAAVEKPISLNQQRMNGVVAALKQSNARR---VIDLGCG-QGNLLKILLKDSFFEQITG 58

Query: 113 IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQ 172
           +D++  S+E  + R +       + ++     +LI G      L         +D  +  
Sbjct: 59  VDVSYRSLEIAQERLDRLRLPRNQWER----LQLIQGA-----LTYQDKRFHGYDAATVI 109

Query: 173 FAMHYSWSTEARARRALANVSALLRPGGTFIGT 205
             + +     +R       +    +P    + T
Sbjct: 110 EVIEHL--DLSRLGAFERVLFEFAQPKIVIVTT 140

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 58.5 bits (141), Expect = 1e-10
 Identities = 19/136 (13%), Positives = 34/136 (25%), Gaps = 30/136 (22%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGY-YVGIDIAEGSIEDCRTRYNGDADHHQ 135
            +         VL+  CG G D  ++        +   D +   ++  R           
Sbjct: 41  WLSRLLTPQTRVLEAGCGHGPDAARF--GPQAARWAAYDFSPELLKLARANAPH------ 92

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
                   A +   +     L       APF +   +                +  +  L
Sbjct: 93  --------ADVYEWNGKG-ELP--AGLGAPFGLIVSRRG----------PTSVILRLPEL 131

Query: 196 LRPGGTFIGTMPDANV 211
             P   F+   P  NV
Sbjct: 132 AAPDAHFLYVGPRLNV 147

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 23/172 (13%), Positives = 43/172 (25%), Gaps = 37/172 (21%)

Query: 33  DESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLA 92
            ES   + R  A  Y       ++    + +  L                     VL+LA
Sbjct: 8   IESQLSYYRARASEYDATFVPYMDSAAPAALERL-------------RAGNIRGDVLELA 54

Query: 93  CGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC 151
            G G        + +   V  +D +   I              +  +           D 
Sbjct: 55  SGTGYWTRHL--SGLADRVTALDGSAEMIA-------------EAGRHGLDNVEFRQQDL 99

Query: 152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
           ++         D  +D       +      + R      +V + + PGG   
Sbjct: 100 FD------WTPDRQWDAVFFAHWLA--HVPDDRFEAFWESVRSAVAPGGVVE 143

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 58.7 bits (141), Expect = 5e-10
 Identities = 21/156 (13%), Positives = 51/156 (32%), Gaps = 18/156 (11%)

Query: 53  QTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW---DKAKIGY 109
           + +E     P +  +++  +    + +  A     ++D  CG  G L+         +  
Sbjct: 694 ERMEAAFFKPPLSKQRVE-YALKHIRESSAST---LVDFGCG-SGSLLDSLLDYPTSLQT 748

Query: 110 YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDIC 169
            +G+DI+   +       +   +             +     Y+  + +  +     DI 
Sbjct: 749 IIGVDISPKGLARAAKMLHVKLNKEA--------CNVKSATLYDGSILEFDSRLHDVDIG 800

Query: 170 SCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT 205
           +C   + +    E +A      V +L  P    + T
Sbjct: 801 TCLEVIEH--MEEDQACEFGEKVLSLFHPKLLIVST 834

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 56.8 bits (137), Expect = 7e-10
 Identities = 30/163 (18%), Positives = 58/163 (35%), Gaps = 35/163 (21%)

Query: 42  KVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
             A+ +++ + +  +    S II              + Y ++   VLD+ CG G    K
Sbjct: 22  SSAEFWNQNSQEMWDSGSRSTIIPF-----------FEQYVKKEAEVLDVGCGDGYGTYK 70

Query: 102 WDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160
              ++ GY   G+DI+E  I+  + R  G                 I GD   +      
Sbjct: 71  L--SRTGYKAVGVDISEVMIQKGKERGEGP------------DLSFIKGDLSSLPF---- 112

Query: 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
            ++  F+      ++ ++        RAL  +  +L+  G   
Sbjct: 113 -ENEQFEAIMAINSLEWT----EEPLRALNEIKRVLKSDGYAC 150

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 56.8 bits (137), Expect = 9e-10
 Identities = 22/163 (13%), Positives = 48/163 (29%), Gaps = 42/163 (25%)

Query: 42  KVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
            +   YS+        R              + +++  L   +G V+ D+  G GG  + 
Sbjct: 7   SIGKQYSQT-------RVPDI--------RIVNAIINLLNLPKGSVIADIGAGTGGYSVA 51

Query: 102 WDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL 160
              A  G +V  ++ +    +                           G    + L    
Sbjct: 52  L--ANQGLFVYAVEPSIVMRQQAVVHPQ---------------VEWFTGYAENLAL---- 90

Query: 161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
             D   D      A+H+ +S   ++ + +  +   +R G   +
Sbjct: 91  -PDKSVDGVISILAIHH-FSHLEKSFQEMQRI---IRDGTIVL 128

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 27/181 (14%), Positives = 43/181 (23%), Gaps = 37/181 (20%)

Query: 31  LEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLD 90
           +E + T+ F       Y        E +  S           +   L +L    G  +L+
Sbjct: 1   MEPDMTQAFDDDTLRFYRGNATAYAERQPRSA---------TLTKFLGEL--PAGAKILE 49

Query: 91  LACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG 149
           L CG G           G+ V   D +     +   R               F       
Sbjct: 50  LGCGAGYQAEAM--LAAGFDVDATDGSPELAAEASRRLGRPVRT------MLFHQ----- 96

Query: 150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA 209
                     L     +D       +             L  +   L+PGG F  +    
Sbjct: 97  ----------LDAIDAYDAVWAHACLL--HVPRDELADVLKLIWRALKPGGLFYASYKSG 144

Query: 210 N 210
            
Sbjct: 145 E 145

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 55.2 bits (132), Expect = 2e-09
 Identities = 22/143 (15%), Positives = 47/143 (32%), Gaps = 21/143 (14%)

Query: 67  KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125
            K  +  K  L ++  +   V +DL  G G ++ K     +  +Y+GID  + ++ D   
Sbjct: 7   TKTVDLSKDELTEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISK 66

Query: 126 RYNGDADHHQRRKKFSFP-ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR 184
           +        ++  K        +      +               +   ++ + W T   
Sbjct: 67  K------IIKKPSKGGLSNVVFVIAAAESL--------PFELKNIADSISILFPWGTLLE 112

Query: 185 ARR-----ALANVSALLRPGGTF 202
                    L+NV+ L +    F
Sbjct: 113 YVIKPNRDILSNVADLAKKEAHF 135

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383

 Score = 55.5 bits (133), Expect = 4e-09
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 8/131 (6%)

Query: 75  SVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDAD 132
           S L    +  G  VLDL CG G D+    K   + G  +G+D+ +  +E  R      A+
Sbjct: 74  STLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAE 133

Query: 133 HHQRRKKFSFPARLICGDCYEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
                   S   R + G    +   +     D+  DI       + S             
Sbjct: 134 KFFGSPSRS-NVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLS----TNKLALFKE 188

Query: 192 VSALLRPGGTF 202
           +  +LR GG  
Sbjct: 189 IHRVLRDGGEL 199

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203

 Score = 53.6 bits (128), Expect = 6e-09
 Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 6/140 (4%)

Query: 65  HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDC 123
           H  ++N  ++     L    G  VL   CGK  D+     +  GY+V G +++E ++E  
Sbjct: 3   HQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMSWL--SGQGYHVVGAELSEAAVERY 60

Query: 124 RTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA 183
            T          +     + A  I   C +        D         + AM        
Sbjct: 61  FTERGEQPHITSQGDFKVYAAPGIEIWCGDF-FALTARDIGHCAAFYDRAAMI--ALPAD 117

Query: 184 RARRALANVSALLRPGGTFI 203
              R + ++ AL+    + +
Sbjct: 118 MRERYVQHLEALMPQACSGL 137

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 53.4 bits (128), Expect = 7e-09
 Identities = 28/168 (16%), Positives = 50/168 (29%), Gaps = 25/168 (14%)

Query: 83  RRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFS 141
                VLD   G     +     + GY   GI+I++  ++                ++ +
Sbjct: 22  NLDKTVLDCGAGGDLPPL-SIFVEDGYKTYGIEISDLQLKKAE----------NFSRENN 70

Query: 142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT 201
           F   +  GD  ++        D           + +    +   + A+  +  +L+PGG 
Sbjct: 71  FKLNISKGDIRKLPF-----KDESMSFVYSYGTIFHMRKND--VKEAIDEIKRVLKPGGL 123

Query: 202 FIGTMPDANVIIKKLREVEGLAI------GNSVYWIRLDEEFADKKFK 243
                           E  G         G  V    +  E ADK FK
Sbjct: 124 ACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFK 171

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 52.5 bits (126), Expect = 1e-08
 Identities = 25/166 (15%), Positives = 48/166 (28%), Gaps = 38/166 (22%)

Query: 38  VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGG 97
            FA  +A+ Y      T           +       +   ++     G+ +L++  G G 
Sbjct: 2   PFAS-LAEAYEA-WYGTP-----LGAYVI-----AEEERALKGLLPPGESLLEVGAGTGY 49

Query: 98  DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157
            L +    +    VG++ +E  +   R R                 A  +      +   
Sbjct: 50  WLRRLPYPQK---VGVEPSEAMLAVGRRRAPE--------------ATWVRAWGEALPF- 91

Query: 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
                   FD+      + +         R L     +LRPGG  +
Sbjct: 92  ----PGESFDVVLLFTTLEFV----EDVERVLLEARRVLRPGGALV 129

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 50.8 bits (121), Expect = 8e-08
 Identities = 15/128 (11%), Positives = 32/128 (25%), Gaps = 17/128 (13%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQ 135
             +L       ++D ACG G        ++    V G+D+++ ++E              
Sbjct: 49  RFELLFNPELPLIDFACGNGTQTKFL--SQFFPRVIGLDVSKSALEIAAKENTAAN---- 102

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
                         D         +  +        +   H       +      ++  L
Sbjct: 103 --------ISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFH--HIPVEKRELLGQSLRIL 152

Query: 196 LRPGGTFI 203
           L   G   
Sbjct: 153 LGKQGAMY 160

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 50.8 bits (121), Expect = 8e-08
 Identities = 23/143 (16%), Positives = 39/143 (27%), Gaps = 20/143 (13%)

Query: 65  HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDC 123
              +    I  ++       G   L   CG G D++    A    +V G+DI+E ++   
Sbjct: 48  DQGRATPLIVHLVDTSSLPLGRA-LVPGCGGGHDVVAM--ASPERFVVGLDISESALAKA 104

Query: 124 RTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA 183
              Y                   +  D +             FD+               
Sbjct: 105 NETYGSSPKAEY--------FSFVKEDVFT------WRPTELFDLIFDYVFFCAI--EPE 148

Query: 184 RARRALANVSALLRPGGTFIGTM 206
                  ++  LL+P G  I  M
Sbjct: 149 MRPAWAKSMYELLKPDGELITLM 171

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 51.0 bits (122), Expect = 8e-08
 Identities = 25/141 (17%), Positives = 35/141 (24%), Gaps = 31/141 (21%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIK----WDKAKIGYYVGIDIAEGSIEDCRTRY 127
             + +L Q+   R     DL CG G         +    I    GID  +  +E    R 
Sbjct: 21  PARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVI---TGIDSDDDMLEKAADRL 77

Query: 128 NGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARR 187
                                 D                D+          W  +  A  
Sbjct: 78  PN--------------TNFGKADLAT------WKPAQKADLLYANAVFQ--WVPDHLA-- 113

Query: 188 ALANVSALLRPGGTFIGTMPD 208
            L+ +   L  GG     MPD
Sbjct: 114 VLSQLMDQLESGGVLAVQMPD 134

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 23/169 (13%), Positives = 41/169 (24%), Gaps = 35/169 (20%)

Query: 37  KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKG 96
             F                  R                 VL +   + G  VLD+  G G
Sbjct: 5   HKFDPSKIKKLDD------PSRLELFDPE---------KVLKEFGLKEGMTVLDVGTGAG 49

Query: 97  GDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV 154
             L    K   + G    ID+ E  +     +          +        ++  +  ++
Sbjct: 50  FYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEK--------VNKLGLK-NVEVLKSEENKI 100

Query: 155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
            L      D   D     F  H      +   + L  +  + +P     
Sbjct: 101 PL-----PDNTVDFIFMAFTFHEL----SEPLKFLEELKRVAKPFAYLA 140

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 26/167 (15%), Positives = 55/167 (32%), Gaps = 22/167 (13%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
            +  ++     +  + VLD+A G GG +       +   V  D+ E  ++  R    G+ 
Sbjct: 25  DLAKLMQIAALKGNEEVLDVATG-GGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG 83

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
                          + GD  ++        D  F I +C+ A H+           ++ 
Sbjct: 84  HQQ---------VEYVQGDAEQMPF-----TDERFHIVTCRIAAHHF----PNPASFVSE 125

Query: 192 VSALLRPGGTFI---GTMPDANVIIKKLREVEGLAIGNSVYWIRLDE 235
              +L+ GG  +    + P+ +        VE     +     +  +
Sbjct: 126 AYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERDYSHHRAWKKSD 172

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 31/167 (18%), Positives = 60/167 (35%), Gaps = 22/167 (13%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
            +  ++     R    VLD+  G  G         +   +G+D  +  +E   +      
Sbjct: 9   SLGLMIKTAECRAEHRVLDIGAG-AGHTALAFSPYVQECIGVDATKEMVEVASSF----- 62

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
               + K      R   G    +        D  FDI +C++A H+     +  R+A+  
Sbjct: 63  ---AQEKGVE-NVRFQQGTAESLPF-----PDDSFDIITCRYAAHHF----SDVRKAVRE 109

Query: 192 VSALLRPGGTFI---GTMPDANVIIKKLREVEGLAIGNSVYWIRLDE 235
           V+ +L+  G F+      P+  V+ + +  +  L   + V    L E
Sbjct: 110 VARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSE 156

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 25/143 (17%), Positives = 46/143 (32%), Gaps = 24/143 (16%)

Query: 70  NNWIKSVLVQLYA--RRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRT 125
           N+   S LV       +   ++D  CG G   +       +   Y GID  E  + + R 
Sbjct: 6   NDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARE 65

Query: 126 RYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARA 185
            +          +   + +  + GD  E      +  +  +DI  C   + +        
Sbjct: 66  LF----------RLLPYDSEFLEGDATE------IELNDKYDIAICHAFLLHM----TTP 105

Query: 186 RRALANVSALLRPGGTFIGTMPD 208
              L  +   ++ GG  I   P 
Sbjct: 106 ETMLQKMIHSVKKGGKIICFEPH 128

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 20/134 (14%)

Query: 74  KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH 133
           + + + L +      L++ C   G   +           ID+   +I     R    +  
Sbjct: 41  QLLRLSLSSGAVSNGLEIGCA-AGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSH- 98

Query: 134 HQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS 193
                           D  +       +    FD+      ++Y      + R A+ N+ 
Sbjct: 99  ----------ISWAATDILQ------FSTAELFDLIVVAEVLYY-LEDMTQMRTAIDNMV 141

Query: 194 ALLRPGGT-FIGTM 206
            +L PGG    G+ 
Sbjct: 142 KMLAPGGHLVFGSA 155

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 19/171 (11%), Positives = 43/171 (25%), Gaps = 21/171 (12%)

Query: 67  KKLNNWIKSVLVQLYARRGDV-----VLDLACGKGG-------DLIKWDKAKIGYYVGID 114
           + +  ++   L  +  R GD      +L +  G G         +             ++
Sbjct: 30  QCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVE 89

Query: 115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFA 174
            +   I   +             +   F         Y+  + +       +D       
Sbjct: 90  PSAEQIAKYKEL----VAKTSNLENVKFAWHKETSSEYQSRMLEKKELQ-KWDFIHMIQM 144

Query: 175 MHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIG 225
           ++Y     A     L    +LL      +  +   +    KL +  G    
Sbjct: 145 LYYVKDIPA----TLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFP 191

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 49.8 bits (119), Expect = 2e-07
 Identities = 27/128 (21%), Positives = 46/128 (35%), Gaps = 13/128 (10%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQR 136
           ++  Y +  D +LD+ CG  G +     +K     GIDI   +I    T       + + 
Sbjct: 23  IIHNYLQEDDEILDIGCG-SGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKT 81

Query: 137 RKKFSFPARLICGDCYEVHLDKVLA-DDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
             K  F       +         L+  D+ FD    Q  +      + R+ R +  V  +
Sbjct: 82  GGKAEF----KVENASS------LSFHDSSFDFAVMQAFLTSVPDPKERS-RIIKEVFRV 130

Query: 196 LRPGGTFI 203
           L+PG    
Sbjct: 131 LKPGAYLY 138

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 26/168 (15%), Positives = 41/168 (24%), Gaps = 35/168 (20%)

Query: 38  VFARKVADHYSR-RTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKG 96
              R  A  Y R R +      +                           V L+L  G G
Sbjct: 4   ALLR-AAYAYDRLRAHPPEVAGQI-----------ATAMASAVHPKGEEPVFLELGVGTG 51

Query: 97  GDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH 155
              +       GY    +D     +E  R +  G               +++  D   + 
Sbjct: 52  RIALPL--IARGYRYIALDADAAMLEVFRQKIAGVDR----------KVQVVQADARAIP 99

Query: 156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
           L      D            H          + LA    +L+PGG  +
Sbjct: 100 L-----PDESVHGVIVVHLWHLV----PDWPKVLAEAIRVLKPGGALL 138

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 10/129 (7%)

Query: 74  KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDA 131
            ++      + G+ +L++ CG+G             G+  GIDIA        T   G A
Sbjct: 33  LAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTL--GQA 90

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
            +H           +         L  +   D  FD      ++ Y     A A      
Sbjct: 91  WNHLLAGPLGDRLTVHFNTNLSDDLGPI--ADQHFDRVVLAHSLWYF----ASANALALL 144

Query: 192 VSALLRPGG 200
              +     
Sbjct: 145 FKNMAAVCD 153

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 48.7 bits (116), Expect = 4e-07
 Identities = 29/178 (16%), Positives = 55/178 (30%), Gaps = 30/178 (16%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
            I S L + Y +    VLDL  G  G    + + +    V +D ++  +E  R +     
Sbjct: 43  LIGSFLEE-YLKNPCRVLDLGGG-TGKWSLFLQERGFEVVLVDPSKEMLEVAREKG---- 96

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICS--CQFAMHYSWSTEARARRAL 189
                         ++             A+D PF   +     A+    S      +A 
Sbjct: 97  -----------VKNVVEAK----------AEDLPFPSGAFEAVLALGDVLSYVENKDKAF 135

Query: 190 ANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYW-IRLDEEFADKKFKSSR 246
           + +  +L P G  I T+ +    ++++ E +                      F S  
Sbjct: 136 SEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYA 193

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 48.3 bits (115), Expect = 5e-07
 Identities = 23/135 (17%), Positives = 47/135 (34%), Gaps = 25/135 (18%)

Query: 70  NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYN 128
           N+++ SV  Q+   +   +L LA G+G +      A +GY V  +D +   +   +    
Sbjct: 18  NDFLVSVANQIPQGK---ILCLAEGEGRNACFL--ASLGYEVTAVDQSSVGLAKAK---- 68

Query: 129 GDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRA 188
                 Q  ++       +  +     L         ++         +     +  ++ 
Sbjct: 69  ------QLAQEKGVKITTVQSN-----LADFDIVADAWEGI----VSIFCHLPSSLRQQL 113

Query: 189 LANVSALLRPGGTFI 203
              V   L+PGG FI
Sbjct: 114 YPKVYQGLKPGGVFI 128

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 48.1 bits (114), Expect = 5e-07
 Identities = 25/140 (17%), Positives = 42/140 (30%), Gaps = 31/140 (22%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYY--VGIDIAEGSIEDCRTRYNGDADHH 134
           L++   R  D +L L CG        +    G+     +D +   +   +  Y       
Sbjct: 35  LLEPELRPEDRILVLGCGNSALSY--ELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQL- 91

Query: 135 QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY-----------SWSTEA 183
                     R    D  ++         A FD+   +  +             S     
Sbjct: 92  ----------RWETMDVRKLDFP-----SASFDVVLEKGTLDALLAGERDPWTVSSEGVH 136

Query: 184 RARRALANVSALLRPGGTFI 203
              + L+ VS +L PGG FI
Sbjct: 137 TVDQVLSEVSRVLVPGGRFI 156

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 48.7 bits (116), Expect = 5e-07
 Identities = 25/133 (18%), Positives = 44/133 (33%), Gaps = 19/133 (14%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGD 130
             K +        G  VL+  CG G   +   K         IDI+  S+E  R      
Sbjct: 25  LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKAREN---- 80

Query: 131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190
                 +       + +  + + +       +D+ FD     F + +          AL 
Sbjct: 81  ----TEKNGIK-NVKFLQANIFSLPF-----EDSSFDHIFVCFVLEHL----QSPEEALK 126

Query: 191 NVSALLRPGGTFI 203
           ++  +L+PGGT  
Sbjct: 127 SLKKVLKPGGTIT 139

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 48.9 bits (116), Expect = 5e-07
 Identities = 17/130 (13%), Positives = 39/130 (30%), Gaps = 15/130 (11%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHH 134
           + + +     +++D+ CG G   ++  +        +G D++   I+       G  D +
Sbjct: 29  IDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTY 88

Query: 135 QRRKKFSFPARLICGDCYEVHLDKVL-ADDAPFDICSCQFAMHYSWSTEARARRALANVS 193
           +                 +         D    D+ +     H+         +   +  
Sbjct: 89  KN-------VSFKISSSDDFKFLGADSVDKQKIDMITAVECAHW-----FDFEKFQRSAY 136

Query: 194 ALLRPGGTFI 203
           A LR  GT  
Sbjct: 137 ANLRKDGTIA 146

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 13/141 (9%)

Query: 68  KLNNWIKSV--LVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDC 123
            + N +      ++++ + GD V+D  CG G D         + G   G DI + +I + 
Sbjct: 4   TIKNSLGQSHDYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANT 63

Query: 124 RTRYNGDADHHQRRKKFSFPARLICGD-CYEVHLDKVLADDAPFDICSCQFAMHYSWSTE 182
             +                   LI                   F++       H   +  
Sbjct: 64  TKKL--------TDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRP 115

Query: 183 ARARRALANVSALLRPGGTFI 203
               +AL+    LL  GG   
Sbjct: 116 ETTIQALSKAMELLVTGGIIT 136

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 48.0 bits (114), Expect = 7e-07
 Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 18/121 (14%)

Query: 83  RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142
               ++ D+ CG GG  +       G   G+D   G I+          + + R+     
Sbjct: 45  TEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFID--------IFNRNARQSGLQN 96

Query: 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202
               I G   ++        +   D+   + A++          R L      L+ GG  
Sbjct: 97  RVTGIVGSMDDLPF-----RNEELDLIWSEGAIYNI-----GFERGLNEWRKYLKKGGYL 146

Query: 203 I 203
            
Sbjct: 147 A 147

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 21/139 (15%), Positives = 44/139 (31%), Gaps = 12/139 (8%)

Query: 66  LKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCR 124
           +K+  +     L +       +V+D   G G D      A +   V   D+ E ++    
Sbjct: 5   IKRPIHMSHDFLAE-VLDDESIVVDATMGNGNDTAFL--AGLSKKVYAFDVQEQALGKTS 61

Query: 125 TRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR 184
            R    +D      +      L   +  + ++ + +   A F++     A     +    
Sbjct: 62  QRL---SDLGIENTEL----ILDGHENLDHYVREPI-RAAIFNLGYLPSADKSVITKPHT 113

Query: 185 ARRALANVSALLRPGGTFI 203
              A+  +   L  GG   
Sbjct: 114 TLEAIEKILDRLEVGGRLA 132

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 35/132 (26%)

Query: 76  VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYN---GDA 131
            L  ++  +  V++D  CG G         +    +  IDI   ++++ + +++     +
Sbjct: 9   YLPNIFEGKKGVIVDYGCGNGFYCKYL--LEFATKLYCIDINVIALKEVKEKFDSVITLS 66

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
           D          P                   D   D      + H     +      ++ 
Sbjct: 67  DPK------EIP-------------------DNSVDFILFANSFHDMDDKQH----VISE 97

Query: 192 VSALLRPGGTFI 203
           V  +L+  G  I
Sbjct: 98  VKRILKDDGRVI 109

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269

 Score = 46.4 bits (110), Expect = 2e-06
 Identities = 33/193 (17%), Positives = 59/193 (30%), Gaps = 37/193 (19%)

Query: 65  HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW-DKAKIGYYVGIDIAEGSIEDC 123
           H + L + I + L +    +   VLD+ CG+G     + D        G+D+++ +I+  
Sbjct: 66  HYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA 125

Query: 124 RTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA 183
             RY                        + +        D   D     +A     + E 
Sbjct: 126 AKRYPQ--------------VTFCVASSHRLPF-----SDTSMDAIIRIYAPC--KAEEL 164

Query: 184 RARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFK 243
                      +++PGG  I   P        L E++GL            E+     F 
Sbjct: 165 A---------RVVKPGGWVITATPGPR----HLMELKGLIYNEVHLHAPHAEQLEG--FT 209

Query: 244 SSRPFGIQYKFHL 256
             +   + Y   L
Sbjct: 210 LQQSAELCYPMRL 222

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 32/166 (19%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
           ++  +            +++  G  G      K K    +G++ +E   E  R R     
Sbjct: 35  YLSELQAVKCLLPEGRGVEIGVG-TGRFAVPLKIK----IGVEPSERMAEIARKR----- 84

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
                         ++ G    + L      D  FD       + +         RAL  
Sbjct: 85  -----------GVFVLKGTAENLPLK-----DESFDFALMVTTICFV----DDPERALKE 124

Query: 192 VSALLRPGGTFIGTMPDANVIIKKL--REVEGLAIGNSVYWIRLDE 235
              +L+ GG  I  + D    + +   +  E      +  +   +E
Sbjct: 125 AYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEE 170

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 46.0 bits (109), Expect = 3e-06
 Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 24/124 (19%)

Query: 83  RRGDVVLDLACGKGG---DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK 139
                + D+ CG GG    L  + K +I    GID+    IE               +  
Sbjct: 45  TDDAKIADIGCGTGGQTLFLADYVKGQI---TGIDLFPDFIEIFNEN--------AVKAN 93

Query: 140 FSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG 199
            +   + I G    +        +   D+   + A++          R +   S  L+ G
Sbjct: 94  CADRVKGITGSMDNLPF-----QNEELDLIWSEGAIYN-----IGFERGMNEWSKYLKKG 143

Query: 200 GTFI 203
           G   
Sbjct: 144 GFIA 147

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 30/133 (22%), Positives = 48/133 (36%), Gaps = 17/133 (12%)

Query: 71  NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGD 130
                ++  L  R GD VLD+ CG G   ++   A+     GI I+   +     R    
Sbjct: 48  RLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANAR---- 103

Query: 131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190
                     +        D  ++       +DA FD      ++H+         RAL 
Sbjct: 104 ----ATAAGLANRVTFSYADAMDLPF-----EDASFDAVWALESLHHM----PDRGRALR 150

Query: 191 NVSALLRPGGTFI 203
            ++ +LRPGGT  
Sbjct: 151 EMARVLRPGGTVA 163

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 44.7 bits (105), Expect = 9e-06
 Identities = 25/142 (17%), Positives = 47/142 (33%), Gaps = 21/142 (14%)

Query: 67  KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRT 125
           K++  +  +   QL ++  DVVLD+  G G    K  +       V +D  +  +E    
Sbjct: 10  KRVQEFSDAEFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISA 69

Query: 126 RYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARA 185
           +    A     +         +             A+  P      +  +   W +  R 
Sbjct: 70  K----AAAKPAKGGLPN-LLYLWAT----------AERLPPLSGVGELHVLMPWGSLLRG 114

Query: 186 RR-----ALANVSALLRPGGTF 202
                   L  ++A+ RPG +F
Sbjct: 115 VLGSSPEMLRGMAAVCRPGASF 136

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 43.1 bits (101), Expect = 4e-05
 Identities = 19/132 (14%), Positives = 34/132 (25%), Gaps = 18/132 (13%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
             ++ +  L        LD   G G                ++  +  +E+ +    G  
Sbjct: 81  GSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM- 139

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
                  KF      I        L         +D+   Q+   Y   T+A   +   +
Sbjct: 140 ----PVGKF------ILASMETATLP-----PNTYDLIVIQWTAIYL--TDADFVKFFKH 182

Query: 192 VSALLRPGGTFI 203
               L P G   
Sbjct: 183 CQQALTPNGYIF 194

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 18/121 (14%), Positives = 35/121 (28%), Gaps = 16/121 (13%)

Query: 83  RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF 142
                 LD   G G    +           +DI E  +   +T      +  +R + +  
Sbjct: 78  TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYL---GEEGKRVRNY-- 132

Query: 143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTF 202
                C    +   +        +D+   Q+ + +   T+      L      LRP G  
Sbjct: 133 ----FCCGLQDFTPE-----PDSYDVIWIQWVIGH--LTDQHLAEFLRRCKGSLRPNGII 181

Query: 203 I 203
           +
Sbjct: 182 V 182

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 34/146 (23%)

Query: 66  LKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRT 125
           L++   + K             VLD+ CG+G + ++  K +    +G+DI E  I+ C  
Sbjct: 32  LRRYIPYFKG---------CRRVLDIGCGRG-EFLELCKEEGIESIGVDINEDMIKFCEG 81

Query: 126 RYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFD-ICSCQFAMHYSWSTEAR 184
           ++N                 ++  D  E         D   D +    F  H       R
Sbjct: 82  KFN-----------------VVKSDAIEYLKSL---PDKYLDGVMISHFVEH---LDPER 118

Query: 185 ARRALANVSALLRPGGTFIGTMPDAN 210
               L+   + ++     +   P+  
Sbjct: 119 LFELLSLCYSKMKYSSYIVIESPNPT 144

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 20/157 (12%), Positives = 48/157 (30%), Gaps = 36/157 (22%)

Query: 61  SPIIHLKKLN--NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG 118
           + +   K  +  N +   L++   +    VLD+ C   G L    K       GI+    
Sbjct: 7   NSLYEEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCS-SGALGAAIKENGTRVSGIEAFPE 65

Query: 119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH-- 176
           + E  + + +                 ++ GD   + +     ++  FD           
Sbjct: 66  AAEQAKEKLD----------------HVVLGDIETMDMP---YEEEQFDCVIF---GDVL 103

Query: 177 ---YSWSTEARARRALANVSALLRPGGTFIGTMPDAN 210
              +           +  V   ++  G  + ++P+ +
Sbjct: 104 EHLFDP------WAVIEKVKPYIKQNGVILASIPNVS 134

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 25/118 (21%), Positives = 36/118 (30%), Gaps = 22/118 (18%)

Query: 88  VLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL 146
            LDL CG G + +    A  GY V   D    SI +             +  +       
Sbjct: 36  TLDLGCGNGRNSLYL--AANGYDVDAWDKNAMSIANVERI---------KSIENLDNLHT 84

Query: 147 ICGDCYEVHLDKVLADDAPFD-ICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
              D         L  D  +D I S    M      +      +AN+    +PGG  +
Sbjct: 85  RVVDLNN------LTFDRQYDFILSTVVLMF--LEAKTI-PGLIANMQRCTKPGGYNL 133

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 22/127 (17%), Positives = 40/127 (31%), Gaps = 25/127 (19%)

Query: 83  RRGDVVLDLACGKGGD---LIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK 139
           +R    LDL  G GG    L++     I     ++IA    +            +  +  
Sbjct: 81  QRQAKGLDLGAGYGGAARFLVRKFGVSI---DCLNIAPVQNKRNE--------EYNNQAG 129

Query: 140 FSFPARLICGDCYEVHLDKVLADDAPFD-ICSCQFAMHYSWSTEARARRALANVSALLRP 198
            +    +  G   E+       +D  +D I S    +H          +     + +L+P
Sbjct: 130 LADNITVKYGSFLEIPC-----EDNSYDFIWSQDAFLHS-----PDKLKVFQECARVLKP 179

Query: 199 GGTFIGT 205
            G    T
Sbjct: 180 RGVMAIT 186

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 22/134 (16%), Positives = 37/134 (27%), Gaps = 24/134 (17%)

Query: 73  IKSVLVQLYARRGDVVLDLACGKGG---DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129
            K +L  +       VLD+  G GG    + +   A      GIDI    +     R   
Sbjct: 44  TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHT---HGIDICSNIVNMANER-VS 99

Query: 130 DADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRAL 189
             +                 D            +  FD+   + A+     +     +  
Sbjct: 100 GNNK----------IIFEANDILTKEF-----PENNFDLIYSRDAILA--LSLENKNKLF 142

Query: 190 ANVSALLRPGGTFI 203
                 L+P GT +
Sbjct: 143 QKCYKWLKPTGTLL 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.9
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.89
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.87
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.84
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.84
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.83
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.81
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.81
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.81
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.81
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.8
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.8
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.8
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.79
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.79
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.79
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.79
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.79
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.79
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.79
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.79
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.79
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.79
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.78
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.78
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.78
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.78
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.78
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.77
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.77
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.77
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.77
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.77
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.77
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.77
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.77
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.77
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.77
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.77
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.77
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.76
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.75
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.75
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.75
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.75
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.75
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.75
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.74
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.74
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.74
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.74
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.74
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.73
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.73
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.73
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.73
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.73
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.73
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.72
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.72
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.72
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.72
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.72
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.72
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.72
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.72
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.72
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.72
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.72
3ocj_A	305	Putative exported protein; structural genomics, PS	99.71
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.71
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.71
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.71
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.71
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.71
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.71
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.71
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.7
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.7
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.7
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.7
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.69
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.69
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.69
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.68
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.68
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.67
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.67
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.67
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.67
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.66
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.66
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.66
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.66
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.66
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.66
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.65
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.65
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.65
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.64
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.64
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.64
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.64
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.63
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.63
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.63
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.63
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.63
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.63
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.62
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.62
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.62
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.62
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.62
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.62
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.62
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.62
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.61
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.61
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.61
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.6
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.6
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.59
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.59
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.59
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.59
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.59
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.59
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.59
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.58
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.58
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.58
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.58
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.58
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.58
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.58
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.58
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.58
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.58
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.57
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.57
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.57
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.57
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.56
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.56
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.56
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.56
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.56
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.56
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.56
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.56
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.56
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.56
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.56
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.55
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.55
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.55
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.55
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.55
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.54
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.54
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.54
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.54
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.54
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.53
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.53
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.53
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.53
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.53
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.52
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.52
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.52
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.51
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.51
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.51
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.51
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.51
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.51
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.5
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.5
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.5
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.5
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.5
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.5
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.5
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.49
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.49
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.49
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.49
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.49
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.48
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.48
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.48
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.48
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.48
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.47
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.47
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.47
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.47
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.47
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.47
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.46
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.46
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.46
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.45
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.45
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.45
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.45
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.45
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.45
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.44
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.44
2o07_A	304	Spermidine synthase; structural genomics, structur	99.44
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.44
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.43
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.43
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.43
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.43
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.43
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.42
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.42
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.42
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.42
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.41
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.41
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.41
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.4
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.4
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.39
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.39
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.38
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.38
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.37
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.36
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.35
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.35
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.35
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.34
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.33
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.33
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.33
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.32
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.32
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.32
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.28
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.27
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.27
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.27
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.26
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.25
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.24
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.24
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.23
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	99.23
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.23
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.22
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.21
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	99.16
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.15
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.15
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.14
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.12
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.09
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.09
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.03
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.01
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.01
3khk_A	544	Type I restriction-modification system methylation	99.0
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	99.0
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.98
3lkd_A	542	Type I restriction-modification system methyltrans	98.97
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.96
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.95
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.93
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.88
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.86
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.85
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.82
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.81
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.76
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.71
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.69
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.66
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.66
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.58
3ufb_A	530	Type I restriction-modification system methyltran	98.54
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	98.51
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.49
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	98.48
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.43
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.41
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.39
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.34
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.31
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	98.29
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.26
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	98.04
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.03
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.97
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	97.57
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.55
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.5
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	97.5
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.49
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.46
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.13
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	97.01
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.84
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.67
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.61
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.6
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.42
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.34
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.13
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.09
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.04
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.96
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.96
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	95.88
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.82
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.76
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.74
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.69
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.6
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.41
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.35
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.17
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.12
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.94
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	94.9
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.86
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.85
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.8
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.72
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.72
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.67
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.66
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.65
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	94.62
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	94.57
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.53
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	94.52
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	94.46
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	94.44
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	94.42
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.38
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	94.29
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.24
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.2
3me5_A	482	Cytosine-specific methyltransferase; structural ge	94.2
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.17
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.15
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	94.14
4eye_A	342	Probable oxidoreductase; structural genomics, niai	94.11
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	94.09
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.06
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	94.0
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.99
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	93.97
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	93.79
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	93.78
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	93.68
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	93.38
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	93.37
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.36
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	93.3
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.3
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.28
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.19
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	92.83
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	92.81
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	92.81
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	92.61
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	92.47
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	92.31
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	92.2
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.15
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	92.1
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	91.9
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	91.88
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	91.79
1id1_A	153	Putative potassium channel protein; RCK domain, E.	91.48
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.39
4g65_A	461	TRK system potassium uptake protein TRKA; structur	91.32
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	91.31
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	91.22
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	91.1
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	91.01
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	90.85
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	90.84
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	90.75
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	90.55
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	90.3
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	90.15
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	90.14
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	89.6
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	89.6
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	89.33
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	88.63
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	88.21
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	88.18
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	88.18
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	88.05
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	87.79
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	87.33
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	87.18
1lnq_A	336	MTHK channels, potassium channel related protein;	87.12
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	86.33
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	86.19
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	85.98
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	85.65
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	85.56
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	85.09
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	85.04
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	84.86
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	84.54
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	84.46
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	84.46
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	84.41
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	84.27
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	83.99
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	83.9
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	83.65
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	83.56
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	82.83
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	82.57
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	82.56
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	82.22
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	82.18
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	81.23
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	81.17
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	81.14
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	81.12
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	81.08
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	80.95
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	80.93
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	80.58
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	80.56
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	80.48
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	80.39
2hwk_A	320	Helicase NSP2; rossman fold, alpha/beta/alpha, mul	80.37
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	80.14

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.90  E-value=1.6e-22  Score=169.68  Aligned_cols=178  Identities=40%  Similarity=0.671  Sum_probs=139.4

Q ss_pred             ccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC
Q 024797           62 PIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS  141 (262)
Q Consensus        62 ~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  141 (262)
                      .....+.+..|+...+......++.+|||+|||+|.++..++..+...|+|+|+|+.+++.|+++....        +..
T Consensus        42 ~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------~~~  113 (298)
T 1ri5_A           42 KTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM--------KRR  113 (298)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS--------CCS
T ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc--------CCC
Confidence            334466788888888776667788999999999999999887766668999999999999999987632        222


Q ss_pred             CCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhhhcC
Q 024797          142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEG  221 (262)
Q Consensus       142 ~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~  221 (262)
                      .++.++++|+.+.++.    ++++||+|++..+++|.+...++...+++++.++|+|||.+++.+++...+...+..   
T Consensus       114 ~~v~~~~~d~~~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~---  186 (298)
T 1ri5_A          114 FKVFFRAQDSYGRHMD----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQ---  186 (298)
T ss_dssp             SEEEEEESCTTTSCCC----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHH---
T ss_pred             ccEEEEECCccccccC----CCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHcc---
Confidence            4589999999887651    367899999999998855577899999999999999999999999999877766553   


Q ss_pred             CccccceEEEEcCchhhhccCCCCCCcceeEEEEecCC
Q 024797          222 LAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVP  259 (262)
Q Consensus       222 ~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~y~f~l~~~  259 (262)
                      ..+++..|+..|....   .++  ..+|..|.|.+...
T Consensus       187 ~~~~~~~~~~~~~~~~---~~~--~~~g~~~~~~l~~~  219 (298)
T 1ri5_A          187 GRMSNDFYKIELEKME---DVP--MESVREYRFTLLDS  219 (298)
T ss_dssp             TCCBCSSEEEECCCCS---SCC--TTTCCEEEEEETTS
T ss_pred             CccCCeeEEEEeCccc---ccc--ccccceEEEEEchh
Confidence            2466777888776532   111  22678888877543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.89  E-value=6.9e-22  Score=167.46  Aligned_cols=188  Identities=39%  Similarity=0.718  Sum_probs=139.0

Q ss_pred             CccccchhHHHHHHHHHHHHh-----c--cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccc
Q 024797           61 SPIIHLKKLNNWIKSVLVQLY-----A--RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH  133 (262)
Q Consensus        61 ~~~~~~~~~~~~~~~~l~~~~-----~--~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~  133 (262)
                      ++++.++.++.|++..+....     .  .++.+|||+|||+|.++..+++.....++|+|+|+.|++.|+++....+..
T Consensus         4 s~i~~lr~~~~~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~   83 (313)
T 3bgv_A            4 SRIFYLRNFNNWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNR   83 (313)
T ss_dssp             -CTHHHHHHHHHHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSS
T ss_pred             CcchhhhhccHHHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhc
Confidence            344556677777665543321     1  267899999999999999888766668999999999999999887521100


Q ss_pred             cccccCCCCCeEEEeCcccccccccccC-CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          134 HQRRKKFSFPARLICGDCYEVHLDKVLA-DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       134 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~-~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      .  ......++.++++|+..++...... ++++||+|++.+++||++.+.++...++.++.++|+|||.+++++++.+.+
T Consensus        84 ~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l  161 (313)
T 3bgv_A           84 R--DSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFEL  161 (313)
T ss_dssp             S--CC-CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHH
T ss_pred             c--cccccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHH
Confidence            0  0001235899999998875211111 245899999999999876788889999999999999999999999999888


Q ss_pred             HHHHhhhcCCccccceEEEEcCchhhhccCCCCCCcceeEEEEe
Q 024797          213 IKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHL  256 (262)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~y~f~l  256 (262)
                      ...+.......+++..|.+.|....      .-..++.+|.|.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~f~~~~------~~~~~~~~~~f~l  199 (313)
T 3bgv_A          162 IRRLEASETESFGNEIYTVKFQKKG------DYPLFGCKYDFNL  199 (313)
T ss_dssp             HHHHTTSSSSEEECSSEEEEESCSS------CCCSSCCEEEEEE
T ss_pred             HHHHHhhccCccCCeeEEEEeCCCC------CCCCccceEEEEE
Confidence            8887776666778888888777542      1245889999988

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.87  E-value=1.9e-21  Score=160.37  Aligned_cols=141  Identities=18%  Similarity=0.357  Sum_probs=107.7

Q ss_pred             HHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc---CCCeEEEEeCC
Q 024797           40 ARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIA  116 (262)
Q Consensus        40 ~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s  116 (262)
                      .+.+++.|++...++...        ...+.+.+..++ .....++.+|||+|||+|..+..+++.   ...+|+|+|+|
T Consensus        35 ~~~va~~fdd~i~rsvP~--------Y~~~~~~i~~l~-~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s  105 (261)
T 4gek_A           35 DERVAEVFPDMIQRSVPG--------YSNIISMIGMLA-ERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNS  105 (261)
T ss_dssp             CHHHHHHHHHHHHHHSTT--------HHHHHHHHHHHH-HHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESC
T ss_pred             CcchhhhhhhhHhhcCCC--------HHHHHHHHHHHH-HHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECC
Confidence            356778887654443221        122333333332 334678999999999999999888763   23479999999


Q ss_pred             hhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhcc
Q 024797          117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL  196 (262)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L  196 (262)
                      +.|++.|++++...        +...+++++++|+.++++       +.||+|+++++++|+  +.+++..++++++++|
T Consensus       106 ~~ml~~A~~~~~~~--------~~~~~v~~~~~D~~~~~~-------~~~d~v~~~~~l~~~--~~~~~~~~l~~i~~~L  168 (261)
T 4gek_A          106 PAMIERCRRHIDAY--------KAPTPVDVIEGDIRDIAI-------ENASMVVLNFTLQFL--EPSERQALLDKIYQGL  168 (261)
T ss_dssp             HHHHHHHHHHHHTS--------CCSSCEEEEESCTTTCCC-------CSEEEEEEESCGGGS--CHHHHHHHHHHHHHHE
T ss_pred             HHHHHHHHHHHHhh--------ccCceEEEeecccccccc-------cccccceeeeeeeec--CchhHhHHHHHHHHHc
Confidence            99999999988732        334579999999988764       569999999999998  7778889999999999


Q ss_pred             CCCcEEEEEe
Q 024797          197 RPGGTFIGTM  206 (262)
Q Consensus       197 ~~gG~li~~~  206 (262)
                      +|||.|++..
T Consensus       169 kpGG~lii~e  178 (261)
T 4gek_A          169 NPGGALVLSE  178 (261)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCcEEEEEe
Confidence            9999999874

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.84  E-value=1.4e-20  Score=149.69  Aligned_cols=127  Identities=17%  Similarity=0.165  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccc---cCCCCCeEEE
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR---KKFSFPARLI  147 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~---~~~~~~v~~~  147 (262)
                      ..+...+..+...++.+|||+|||+|..+..+++.+. .|+|+|+|+.|++.|+++...........   .....+++++
T Consensus         9 ~~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~   87 (203)
T 1pjz_A            9 KDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW   87 (203)
T ss_dssp             HHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred             HHHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEE
Confidence            3444455555556788999999999999999887644 89999999999999998754200000000   0012468999


Q ss_pred             eCcccccccccccCCC-CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          148 CGDCYEVHLDKVLADD-APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       148 ~~d~~~~~~~~~~~~~-~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ++|+.+++.     ++ ++||+|++..+++|+  +.++...++++++++|||||++++.
T Consensus        88 ~~d~~~l~~-----~~~~~fD~v~~~~~l~~l--~~~~~~~~l~~~~r~LkpgG~~~l~  139 (203)
T 1pjz_A           88 CGDFFALTA-----RDIGHCAAFYDRAAMIAL--PADMRERYVQHLEALMPQACSGLLI  139 (203)
T ss_dssp             EECCSSSTH-----HHHHSEEEEEEESCGGGS--CHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred             ECccccCCc-----ccCCCEEEEEECcchhhC--CHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            999998875     33 789999999999988  6677888999999999999984433

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.84  E-value=2.1e-20  Score=157.35  Aligned_cols=144  Identities=26%  Similarity=0.367  Sum_probs=102.8

Q ss_pred             chhHHHHHHHHHHHHhcc-------CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCcccccccc
Q 024797           66 LKKLNNWIKSVLVQLYAR-------RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK  138 (262)
Q Consensus        66 ~~~~~~~~~~~l~~~~~~-------~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~  138 (262)
                      ++.++.|++..+......       ++.+|||+|||+|..+..++..+...|+|+|+|+.|++.|+++..+.+....   
T Consensus        23 ~~~~nn~vks~li~~~~~~~~~~~~~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~---   99 (302)
T 2vdw_A           23 LGILSNYVKTLLISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIK---   99 (302)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTTSSCCSCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhccCCCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhcccccc---
Confidence            345667777666543322       4689999999999888877666666899999999999999998763211000   


Q ss_pred             CCCCCeEEEeCcccccc----cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHH
Q 024797          139 KFSFPARLICGDCYEVH----LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK  214 (262)
Q Consensus       139 ~~~~~v~~~~~d~~~~~----~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~  214 (262)
                      .-..++.+.+.|+....    +... .++++||+|+|.+++||++++. +...++++++++|||||++++++++.+.+..
T Consensus       100 ~~~~~~~f~~~d~~~d~~~~~l~~~-~~~~~FD~V~~~~~lhy~~~~~-~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~  177 (302)
T 2vdw_A          100 TKYYKFDYIQETIRSDTFVSSVREV-FYFGKFNIIDWQFAIHYSFHPR-HYATVMNNLSELTASGGKVLITTMDGDKLSK  177 (302)
T ss_dssp             -CCCEEEEEECCTTSSSHHHHHHTT-CCSSCEEEEEEESCGGGTCSTT-THHHHHHHHHHHEEEEEEEEEEEECHHHHTT
T ss_pred             ccccccchhhhhcccchhhhhhhcc-ccCCCeeEEEECchHHHhCCHH-HHHHHHHHHHHHcCCCCEEEEEeCCHHHHHH
Confidence            00012567788773211    1000 1467999999999999876554 4579999999999999999999999877653

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.83  E-value=1.4e-20  Score=154.78  Aligned_cols=128  Identities=22%  Similarity=0.276  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCCh
Q 024797           38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE  117 (262)
Q Consensus        38 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~  117 (262)
                      ++|+.+++.|++.. ..          ....+.+|+...     ...+.+|||||||+|..+..++.. ..+|+|+|+|+
T Consensus         9 d~F~~~a~~Y~~~R-p~----------yp~~l~~~l~~~-----~~~~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~   71 (257)
T 4hg2_A            9 DHFTPVADAYRAFR-PR----------YPRALFRWLGEV-----APARGDALDCGCGSGQASLGLAEF-FERVHAVDPGE   71 (257)
T ss_dssp             -----------CCC-CC----------CCHHHHHHHHHH-----SSCSSEEEEESCTTTTTHHHHHTT-CSEEEEEESCH
T ss_pred             HHHHHHHHHHHHHC-CC----------cHHHHHHHHHHh-----cCCCCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcH
Confidence            47888899997421 10          123333333322     245679999999999999888754 45899999999


Q ss_pred             hHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccC
Q 024797          118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR  197 (262)
Q Consensus       118 ~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~  197 (262)
                      .|++.|++.               .++.++++|+.++++     ++++||+|++..++||+  +   ..+++.+++|+||
T Consensus        72 ~ml~~a~~~---------------~~v~~~~~~~e~~~~-----~~~sfD~v~~~~~~h~~--~---~~~~~~e~~rvLk  126 (257)
T 4hg2_A           72 AQIRQALRH---------------PRVTYAVAPAEDTGL-----PPASVDVAIAAQAMHWF--D---LDRFWAELRRVAR  126 (257)
T ss_dssp             HHHHTCCCC---------------TTEEEEECCTTCCCC-----CSSCEEEEEECSCCTTC--C---HHHHHHHHHHHEE
T ss_pred             Hhhhhhhhc---------------CCceeehhhhhhhcc-----cCCcccEEEEeeehhHh--h---HHHHHHHHHHHcC
Confidence            999887542               249999999999887     78999999999999886  3   4579999999999


Q ss_pred             CCcEEEEEeC
Q 024797          198 PGGTFIGTMP  207 (262)
Q Consensus       198 ~gG~li~~~~  207 (262)
                      |||.|++...
T Consensus       127 pgG~l~~~~~  136 (257)
T 4hg2_A          127 PGAVFAAVTY  136 (257)
T ss_dssp             EEEEEEEEEE
T ss_pred             CCCEEEEEEC
Confidence            9999987653

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.81  E-value=3.4e-20  Score=147.11  Aligned_cols=141  Identities=11%  Similarity=0.038  Sum_probs=106.9

Q ss_pred             chhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEe
Q 024797           35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGID  114 (262)
Q Consensus        35 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD  114 (262)
                      ....+|+.++..|++.......        .......++..++    ...+.+|||+|||+|.++..++... .+++|+|
T Consensus         4 ~~~~~y~~~a~~y~~~~~~~~~--------~~~~~~~~l~~~~----~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD   70 (203)
T 3h2b_A            4 DVSKAYSSPTFDAEALLGTVIS--------AEDPDRVLIEPWA----TGVDGVILDVGSGTGRWTGHLASLG-HQIEGLE   70 (203)
T ss_dssp             HHHHHHHCTTTCHHHHTCSSCC--------TTCTTHHHHHHHH----HHCCSCEEEETCTTCHHHHHHHHTT-CCEEEEC
T ss_pred             HHHHHHhhHHHHHHHHhhhhcc--------ccHHHHHHHHHHh----ccCCCeEEEecCCCCHHHHHHHhcC-CeEEEEe
Confidence            3556788887777644322110        0112222333332    2347899999999999999887663 3899999


Q ss_pred             CChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHh
Q 024797          115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA  194 (262)
Q Consensus       115 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~  194 (262)
                      +|+.|++.++++..              ++.++++|+.++++     ++++||+|++..+++|+  +.+++..+++++.+
T Consensus        71 ~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~  129 (203)
T 3h2b_A           71 PATRLVELARQTHP--------------SVTFHHGTITDLSD-----SPKRWAGLLAWYSLIHM--GPGELPDALVALRM  129 (203)
T ss_dssp             CCHHHHHHHHHHCT--------------TSEEECCCGGGGGG-----SCCCEEEEEEESSSTTC--CTTTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCC--------------CCeEEeCccccccc-----CCCCeEEEEehhhHhcC--CHHHHHHHHHHHHH
Confidence            99999999998754              48999999998876     67899999999999998  55578999999999


Q ss_pred             ccCCCcEEEEEeCCh
Q 024797          195 LLRPGGTFIGTMPDA  209 (262)
Q Consensus       195 ~L~~gG~li~~~~~~  209 (262)
                      +|+|||.+++.+++.
T Consensus       130 ~L~pgG~l~i~~~~~  144 (203)
T 3h2b_A          130 AVEDGGGLLMSFFSG  144 (203)
T ss_dssp             TEEEEEEEEEEEECC
T ss_pred             HcCCCcEEEEEEccC
Confidence            999999999987543

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.81  E-value=2.8e-19  Score=149.30  Aligned_cols=152  Identities=20%  Similarity=0.210  Sum_probs=109.5

Q ss_pred             hhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeC
Q 024797           36 TKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDI  115 (262)
Q Consensus        36 ~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~  115 (262)
                      ....|+.++..|+............     .......+..++..+. .++.+|||+|||+|.++..++.. ...|+|+|+
T Consensus        26 ~~~~fd~~a~~y~~~~~~~~~~~~~-----~~~~~~~l~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~   98 (285)
T 4htf_A           26 QDRNFDDIAEKFSRNIYGTTKGQLR-----QAILWQDLDRVLAEMG-PQKLRVLDAGGGEGQTAIKMAER-GHQVILCDL   98 (285)
T ss_dssp             ------CHHHHHHSCTTSCHHHHHH-----HHHHHHHHHHHHHHTC-SSCCEEEEETCTTCHHHHHHHHT-TCEEEEEES
T ss_pred             cccchhhHHHHHHHHhccCCcchHH-----HHHHHHHHHHHHHhcC-CCCCEEEEeCCcchHHHHHHHHC-CCEEEEEEC
Confidence            4468888999997544333221110     1112222334444443 34679999999999999988766 448999999


Q ss_pred             ChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc-cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHh
Q 024797          116 AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA  194 (262)
Q Consensus       116 s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~  194 (262)
                      |+.+++.|++++...        +...++.++++|+.+++ +     ++++||+|++..+++|+    +++..+++++.+
T Consensus        99 s~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~  161 (285)
T 4htf_A           99 SAQMIDRAKQAAEAK--------GVSDNMQFIHCAAQDVASH-----LETPVDLILFHAVLEWV----ADPRSVLQTLWS  161 (285)
T ss_dssp             CHHHHHHHHHHHHC---------CCGGGEEEEESCGGGTGGG-----CSSCEEEEEEESCGGGC----SCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc--------CCCcceEEEEcCHHHhhhh-----cCCCceEEEECchhhcc----cCHHHHHHHHHH
Confidence            999999999988632        22356999999998876 3     57899999999999998    566889999999


Q ss_pred             ccCCCcEEEEEeCChHH
Q 024797          195 LLRPGGTFIGTMPDANV  211 (262)
Q Consensus       195 ~L~~gG~li~~~~~~~~  211 (262)
                      +|+|||.+++.+++...
T Consensus       162 ~LkpgG~l~~~~~~~~~  178 (285)
T 4htf_A          162 VLRPGGVLSLMFYNAHG  178 (285)
T ss_dssp             TEEEEEEEEEEEEBHHH
T ss_pred             HcCCCeEEEEEEeCCch
Confidence            99999999999887654

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.81  E-value=6e-19  Score=144.60  Aligned_cols=122  Identities=14%  Similarity=0.113  Sum_probs=102.6

Q ss_pred             hHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEE
Q 024797           68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI  147 (262)
Q Consensus        68 ~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~  147 (262)
                      ....|...++..+...++.+|||+|||+|.++..++......|+|+|+|+.+++.|+++...           ..++.++
T Consensus        77 ~~~~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~~~  145 (254)
T 1xtp_A           77 VDIEGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-----------MPVGKFI  145 (254)
T ss_dssp             HHHHHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-----------SSEEEEE
T ss_pred             HHHHHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc-----------CCceEEE
Confidence            34456666766665567889999999999999888765566799999999999999998752           1458999


Q ss_pred             eCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       148 ~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ++|+..+++     ++++||+|++..+++|+  +.+++..+++++.++|+|||.+++..+
T Consensus       146 ~~d~~~~~~-----~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          146 LASMETATL-----PPNTYDLIVIQWTAIYL--TDADFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             ESCGGGCCC-----CSSCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EccHHHCCC-----CCCCeEEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            999988775     57899999999999998  667889999999999999999999874

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.81  E-value=2.2e-19  Score=145.50  Aligned_cols=140  Identities=14%  Similarity=0.250  Sum_probs=106.7

Q ss_pred             HHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHh-ccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeC
Q 024797           38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDI  115 (262)
Q Consensus        38 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~  115 (262)
                      ++|+.++..|+......           ......+...++..+. ..++.+|||+|||+|.++..+++.. ..+++|+|+
T Consensus         8 ~~f~~~a~~y~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~   76 (234)
T 3dtn_A            8 RKFDAVSGKYDEQRRKF-----------IPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDM   76 (234)
T ss_dssp             CCCCHHHHHHHHHHHHH-----------CTTHHHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEES
T ss_pred             HHHHHHHHHHHHhHHHh-----------CcCHHHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEEC
Confidence            46777888887533221           1112222333333332 3567899999999999999887753 558999999


Q ss_pred             ChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhc
Q 024797          116 AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL  195 (262)
Q Consensus       116 s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~  195 (262)
                      |+.+++.|+++....           .++.++++|+.+++.     + ++||+|++..+++|+  +......+++++.++
T Consensus        77 s~~~~~~a~~~~~~~-----------~~~~~~~~d~~~~~~-----~-~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~  137 (234)
T 3dtn_A           77 SEKMLEIAKNRFRGN-----------LKVKYIEADYSKYDF-----E-EKYDMVVSALSIHHL--EDEDKKELYKRSYSI  137 (234)
T ss_dssp             CHHHHHHHHHHTCSC-----------TTEEEEESCTTTCCC-----C-SCEEEEEEESCGGGS--CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhhccC-----------CCEEEEeCchhccCC-----C-CCceEEEEeCccccC--CHHHHHHHHHHHHHh
Confidence            999999999987631           269999999998875     3 899999999999998  666667899999999


Q ss_pred             cCCCcEEEEEeC
Q 024797          196 LRPGGTFIGTMP  207 (262)
Q Consensus       196 L~~gG~li~~~~  207 (262)
                      |+|||.+++..+
T Consensus       138 LkpgG~l~~~~~  149 (234)
T 3dtn_A          138 LKESGIFINADL  149 (234)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             cCCCcEEEEEEe
Confidence            999999998764

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.80  E-value=3.8e-19  Score=142.77  Aligned_cols=142  Identities=18%  Similarity=0.149  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCC
Q 024797           37 KVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA  116 (262)
Q Consensus        37 ~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s  116 (262)
                      .+.|+.+++.|+.........        .+........++..+...++.+|||+|||+|.++..++.. ..+++|+|+|
T Consensus         6 ~~~f~~~a~~y~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s   76 (220)
T 3hnr_A            6 NGLFDEWAHTYDSFVQGEDIQ--------YKEVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPS   76 (220)
T ss_dssp             ------------------CCT--------TTTTTTTHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHHT-TCEEEEECSC
T ss_pred             HHHHHHHHHHHHHHhhcchHh--------HHHHHHHHHHHHHHhhccCCCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCC
Confidence            357888888887543111100        1111112233444455568889999999999999988765 4589999999


Q ss_pred             hhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhcc
Q 024797          117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL  196 (262)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L  196 (262)
                      +.+++.++++..             .++.++++|+.+++.     + ++||+|++..+++|+  +......+++++.++|
T Consensus        77 ~~~~~~a~~~~~-------------~~~~~~~~d~~~~~~-----~-~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~L  135 (220)
T 3hnr_A           77 REMRMIAKEKLP-------------KEFSITEGDFLSFEV-----P-TSIDTIVSTYAFHHL--TDDEKNVAIAKYSQLL  135 (220)
T ss_dssp             HHHHHHHHHHSC-------------TTCCEESCCSSSCCC-----C-SCCSEEEEESCGGGS--CHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCC-------------CceEEEeCChhhcCC-----C-CCeEEEEECcchhcC--ChHHHHHHHHHHHHhc
Confidence            999999998754             248899999998875     4 899999999999998  5555556999999999


Q ss_pred             CCCcEEEEEeCC
Q 024797          197 RPGGTFIGTMPD  208 (262)
Q Consensus       197 ~~gG~li~~~~~  208 (262)
                      +|||.+++..++
T Consensus       136 kpgG~l~i~~~~  147 (220)
T 3hnr_A          136 NKGGKIVFADTI  147 (220)
T ss_dssp             CTTCEEEEEEEC
T ss_pred             CCCCEEEEEecc
Confidence            999999998654

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.80  E-value=2.8e-19  Score=145.52  Aligned_cols=141  Identities=18%  Similarity=0.281  Sum_probs=95.6

Q ss_pred             chhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEe
Q 024797           35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGID  114 (262)
Q Consensus        35 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD  114 (262)
                      ..+.+|+..++.|+........  ..    ....+..++...     ..++.+|||+|||+|.++..++.. ..+|+|+|
T Consensus        15 ~~~~~~~~~a~~~~~~~~~~~~--~~----~~~~~~~~l~~~-----~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD   82 (242)
T 3l8d_A           15 SAEKKWDSSAEFWNQNSQEMWD--SG----SRSTIIPFFEQY-----VKKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVD   82 (242)
T ss_dssp             -----------------CHHHH--TS----TTTTHHHHHHHH-----SCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEE
T ss_pred             HHHHHHHhHHHHhhhhhhhccC--cc----cHHHHHHHHHHH-----cCCCCeEEEEcCCCCHHHHHHHHc-CCeEEEEE
Confidence            3556888888888643322111  10    012222222222     357889999999999999988766 34899999


Q ss_pred             CChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHh
Q 024797          115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA  194 (262)
Q Consensus       115 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~  194 (262)
                      +|+.+++.++++..            ..++.++++|+.++++     ++++||+|++..+++|+    .++..+++++.+
T Consensus        83 ~s~~~~~~a~~~~~------------~~~~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~  141 (242)
T 3l8d_A           83 ISEVMIQKGKERGE------------GPDLSFIKGDLSSLPF-----ENEQFEAIMAINSLEWT----EEPLRALNEIKR  141 (242)
T ss_dssp             SCHHHHHHHHTTTC------------BTTEEEEECBTTBCSS-----CTTCEEEEEEESCTTSS----SCHHHHHHHHHH
T ss_pred             CCHHHHHHHHhhcc------------cCCceEEEcchhcCCC-----CCCCccEEEEcChHhhc----cCHHHHHHHHHH
Confidence            99999999998753            4468999999998876     67899999999999998    567799999999


Q ss_pred             ccCCCcEEEEEeCC
Q 024797          195 LLRPGGTFIGTMPD  208 (262)
Q Consensus       195 ~L~~gG~li~~~~~  208 (262)
                      +|+|||.+++.+++
T Consensus       142 ~L~pgG~l~i~~~~  155 (242)
T 3l8d_A          142 VLKSDGYACIAILG  155 (242)
T ss_dssp             HEEEEEEEEEEEEC
T ss_pred             HhCCCeEEEEEEcC
Confidence            99999999998753

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.80  E-value=2.2e-18  Score=140.27  Aligned_cols=147  Identities=21%  Similarity=0.349  Sum_probs=111.0

Q ss_pred             HHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChh
Q 024797           39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG  118 (262)
Q Consensus        39 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~  118 (262)
                      .|+.+++.|+.......         ....+..++...+... ..++.+|||+|||+|.++..+++.. .+++|+|+|+.
T Consensus         2 ~y~~~a~~yd~~~~~~~---------~~~~~~~~~~~~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~s~~   70 (246)
T 1y8c_A            2 CYNKFAHIYDKLIRADV---------DYKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPKF-KNTWAVDLSQE   70 (246)
T ss_dssp             CHHHHHHHHHHHTTCSC---------CHHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGGS-SEEEEECSCHH
T ss_pred             hHHHHHHHHHHHccccc---------cHHHHHHHHHHHHHHh-CCCCCeEEEeCCCCCHHHHHHHHCC-CcEEEEECCHH
Confidence            47788888875332110         0223333344343322 2367899999999999999887653 47999999999


Q ss_pred             HHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcc-cccccCCCHHHHHHHHHHHHhccC
Q 024797          119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSALLR  197 (262)
Q Consensus       119 ~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~L~  197 (262)
                      |++.|+++....          ..++.++++|+.+++.     + ++||+|++.. +++|+ .+.++...+++++.++|+
T Consensus        71 ~~~~a~~~~~~~----------~~~~~~~~~d~~~~~~-----~-~~fD~v~~~~~~l~~~-~~~~~~~~~l~~~~~~L~  133 (246)
T 1y8c_A           71 MLSEAENKFRSQ----------GLKPRLACQDISNLNI-----N-RKFDLITCCLDSTNYI-IDSDDLKKYFKAVSNHLK  133 (246)
T ss_dssp             HHHHHHHHHHHT----------TCCCEEECCCGGGCCC-----S-CCEEEEEECTTGGGGC-CSHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHhhc----------CCCeEEEecccccCCc-----c-CCceEEEEcCcccccc-CCHHHHHHHHHHHHHhcC
Confidence            999999987631          2258999999988765     3 7899999998 99987 455788999999999999


Q ss_pred             CCcEEEEEeCChHHHH
Q 024797          198 PGGTFIGTMPDANVII  213 (262)
Q Consensus       198 ~gG~li~~~~~~~~~~  213 (262)
                      |||.+++++++...+.
T Consensus       134 pgG~l~~~~~~~~~~~  149 (246)
T 1y8c_A          134 EGGVFIFDINSYYKLS  149 (246)
T ss_dssp             EEEEEEEEEECHHHHH
T ss_pred             CCcEEEEEecCHHHHH
Confidence            9999999999886543

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.79  E-value=1.4e-18  Score=143.10  Aligned_cols=139  Identities=16%  Similarity=0.172  Sum_probs=105.6

Q ss_pred             HHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHH-HHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCC
Q 024797           38 VFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLV-QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIA  116 (262)
Q Consensus        38 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s  116 (262)
                      ..|+..++.|+......           ......++..+.. .....++.+|||+|||+|.++..+++. ..+|+|+|+|
T Consensus         3 ~~~~~~a~~y~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s   70 (263)
T 2yqz_A            3 SALLRAAYAYDRLRAHP-----------PEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDAD   70 (263)
T ss_dssp             HHHHHHHHHHHHHHCCC-----------HHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTT-TCEEEEEESC
T ss_pred             CchHHHHHHHhhhcccC-----------hHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECC
Confidence            57888999997543221           1112222222221 113457889999999999999988765 4589999999


Q ss_pred             hhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhcc
Q 024797          117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL  196 (262)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L  196 (262)
                      +.|++.++++..          ....++.+.++|+.++++     ++++||+|++..+++|+    .+...+++++.++|
T Consensus        71 ~~~~~~a~~~~~----------~~~~~~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L  131 (263)
T 2yqz_A           71 AAMLEVFRQKIA----------GVDRKVQVVQADARAIPL-----PDESVHGVIVVHLWHLV----PDWPKVLAEAIRVL  131 (263)
T ss_dssp             HHHHHHHHHHTT----------TSCTTEEEEESCTTSCCS-----CTTCEEEEEEESCGGGC----TTHHHHHHHHHHHE
T ss_pred             HHHHHHHHHHhh----------ccCCceEEEEcccccCCC-----CCCCeeEEEECCchhhc----CCHHHHHHHHHHHC
Confidence            999999999862          113469999999988775     67899999999999998    56789999999999


Q ss_pred             CCCcEEEEEeC
Q 024797          197 RPGGTFIGTMP  207 (262)
Q Consensus       197 ~~gG~li~~~~  207 (262)
                      +|||.+++..+
T Consensus       132 ~pgG~l~~~~~  142 (263)
T 2yqz_A          132 KPGGALLEGWD  142 (263)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CCCcEEEEEec
Confidence            99999988744

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.79  E-value=4e-19  Score=142.12  Aligned_cols=118  Identities=14%  Similarity=0.171  Sum_probs=97.0

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      +...++..+...++ +|||+|||+|.++..+++....+++|+|+|+.+++.|++++...        +...++.++++|+
T Consensus        32 ~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~--------~~~~~~~~~~~d~  102 (219)
T 3dlc_A           32 IAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADA--------NLNDRIQIVQGDV  102 (219)
T ss_dssp             HHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHT--------TCTTTEEEEECBT
T ss_pred             HHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhc--------cccCceEEEEcCH
Confidence            34444544444444 99999999999999887764558999999999999999987632        2344699999999


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .++++     ++++||+|++..+++|+    +++..+++++.++|+|||.+++..+
T Consensus       103 ~~~~~-----~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~  149 (219)
T 3dlc_A          103 HNIPI-----EDNYADLIVSRGSVFFW----EDVATAFREIYRILKSGGKTYIGGG  149 (219)
T ss_dssp             TBCSS-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHCCC-----CcccccEEEECchHhhc----cCHHHHHHHHHHhCCCCCEEEEEec
Confidence            98876     67899999999999998    6678899999999999999999754

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.79  E-value=5.2e-19  Score=144.21  Aligned_cols=106  Identities=16%  Similarity=0.181  Sum_probs=91.6

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..+++.. ..|+|+|+|+.+++.|+++..            . ++.++++|+.++.      +
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~------------~-~v~~~~~d~~~~~------~  100 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLK------------D-GITYIHSRFEDAQ------L  100 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSC------------S-CEEEEESCGGGCC------C
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhC-CcEEEEeCCHHHHHHHHHhhh------------C-CeEEEEccHHHcC------c
Confidence            467799999999999998887644 379999999999999999875            2 5899999998763      5


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHH-hccCCCcEEEEEeCChHHH
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVS-ALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~-~~L~~gG~li~~~~~~~~~  212 (262)
                      +++||+|++..+++|+    +++..+++++. ++|+|||.+++.+++....
T Consensus       101 ~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~  147 (250)
T 2p7i_A          101 PRRYDNIVLTHVLEHI----DDPVALLKRINDDWLAEGGRLFLVCPNANAV  147 (250)
T ss_dssp             SSCEEEEEEESCGGGC----SSHHHHHHHHHHTTEEEEEEEEEEEECTTCH
T ss_pred             CCcccEEEEhhHHHhh----cCHHHHHHHHHHHhcCCCCEEEEEcCChHHH
Confidence            7899999999999998    56689999999 9999999999999876543

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.79  E-value=1.7e-18  Score=145.06  Aligned_cols=135  Identities=18%  Similarity=0.254  Sum_probs=103.4

Q ss_pred             hhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEE
Q 024797           67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL  146 (262)
Q Consensus        67 ~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~  146 (262)
                      ..+..++...   +...++.+|||+|||+|.++..++..+. +|+|+|+|+.|++.|+++.......     ....++.+
T Consensus        43 ~~~~~~l~~~---l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~-----~~~~~~~~  113 (293)
T 3thr_A           43 AEYKAWLLGL---LRQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKE-----PAFDKWVI  113 (293)
T ss_dssp             HHHHHHHHHH---HHHTTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTS-----HHHHTCEE
T ss_pred             HHHHHHHHHH---hcccCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccc-----cccceeeE
Confidence            3444444433   3345778999999999999998877644 8999999999999998875321110     01235788


Q ss_pred             EeCcccccc---cccccCCCCCeeEEEEc-ccccccCC---CHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHH
Q 024797          147 ICGDCYEVH---LDKVLADDAPFDICSCQ-FAMHYSWS---TEARARRALANVSALLRPGGTFIGTMPDANVIIKK  215 (262)
Q Consensus       147 ~~~d~~~~~---~~~~~~~~~~fD~V~~~-~~l~~~~~---~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~  215 (262)
                      .++|+..++   +     ++++||+|++. .+++|+.+   +.+++..++++++++|+|||++++++++.+.+...
T Consensus       114 ~~~d~~~~~~~~~-----~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~  184 (293)
T 3thr_A          114 EEANWLTLDKDVP-----AGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILST  184 (293)
T ss_dssp             EECCGGGHHHHSC-----CTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH
T ss_pred             eecChhhCccccc-----cCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHHhhc
Confidence            999988876   4     57899999998 89998832   13568999999999999999999999998877654

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.79  E-value=2.4e-19  Score=143.08  Aligned_cols=110  Identities=21%  Similarity=0.297  Sum_probs=91.9

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      ..++.... .++.+|||+|||+|.++..+   +..+++|+|+|+.+++.++++..              ++.++++|+.+
T Consensus        27 ~~~l~~~~-~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~~--------------~~~~~~~d~~~   88 (211)
T 2gs9_A           27 ERALKGLL-PPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRAP--------------EATWVRAWGEA   88 (211)
T ss_dssp             HHHHHTTC-CCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHCT--------------TSEEECCCTTS
T ss_pred             HHHHHHhc-CCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhCC--------------CcEEEEccccc
Confidence            33444433 37889999999999888766   33489999999999999998753              38899999988


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      +++     ++++||+|++..+++|+    +++..+++++.++|+|||.+++.+++..
T Consensus        89 ~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~~~~  136 (211)
T 2gs9_A           89 LPF-----PGESFDVVLLFTTLEFV----EDVERVLLEARRVLRPGGALVVGVLEAL  136 (211)
T ss_dssp             CCS-----CSSCEEEEEEESCTTTC----SCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred             CCC-----CCCcEEEEEEcChhhhc----CCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            776     67899999999999998    4678999999999999999999988764

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.79  E-value=6.7e-19  Score=145.97  Aligned_cols=119  Identities=25%  Similarity=0.388  Sum_probs=99.2

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      ....++..+...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++....        +...++.++++|+
T Consensus        49 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------~~~~~~~~~~~d~  120 (273)
T 3bus_A           49 LTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAA--------GLANRVTFSYADA  120 (273)
T ss_dssp             HHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHT--------TCTTTEEEEECCT
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhc--------CCCcceEEEECcc
Confidence            34455555556688999999999999999887754568999999999999999987632        2344699999999


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .++++     ++++||+|++..+++|+    .+...+++++.++|+|||.+++..+
T Consensus       121 ~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~i~~~  167 (273)
T 3bus_A          121 MDLPF-----EDASFDAVWALESLHHM----PDRGRALREMARVLRPGGTVAIADF  167 (273)
T ss_dssp             TSCCS-----CTTCEEEEEEESCTTTS----SCHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             ccCCC-----CCCCccEEEEechhhhC----CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            88876     67899999999999998    5568999999999999999998764

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.79  E-value=9.8e-19  Score=139.55  Aligned_cols=132  Identities=17%  Similarity=0.169  Sum_probs=105.8

Q ss_pred             cchhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEE
Q 024797           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI  113 (262)
Q Consensus        34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gv  113 (262)
                      .....+|+..+..|+.....                ..++..++..  ..++.+|||+|||+|.++..+++. ...|+|+
T Consensus        11 ~~~~~~~~~~~~~y~~~~~~----------------~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~v   71 (211)
T 3e23_A           11 DDTLRFYRGNATAYAERQPR----------------SATLTKFLGE--LPAGAKILELGCGAGYQAEAMLAA-GFDVDAT   71 (211)
T ss_dssp             HHHHHHHHHSHHHHTTCCCC----------------CHHHHHHHTT--SCTTCEEEESSCTTSHHHHHHHHT-TCEEEEE
T ss_pred             HHHHHHHHHHHHHHhhccch----------------hHHHHHHHHh--cCCCCcEEEECCCCCHHHHHHHHc-CCeEEEE
Confidence            45667888888888643221                2223333332  246789999999999999988765 3489999


Q ss_pred             eCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHH
Q 024797          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS  193 (262)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~  193 (262)
                      |+|+.+++.++++..               +.+.++|+..++      ++++||+|++..+++|+  +.+++..+++++.
T Consensus        72 D~s~~~~~~a~~~~~---------------~~~~~~d~~~~~------~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~  128 (211)
T 3e23_A           72 DGSPELAAEASRRLG---------------RPVRTMLFHQLD------AIDAYDAVWAHACLLHV--PRDELADVLKLIW  128 (211)
T ss_dssp             ESCHHHHHHHHHHHT---------------SCCEECCGGGCC------CCSCEEEEEECSCGGGS--CHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHhcC---------------CceEEeeeccCC------CCCcEEEEEecCchhhc--CHHHHHHHHHHHH
Confidence            999999999998864               778899988776      47899999999999998  6678999999999


Q ss_pred             hccCCCcEEEEEeC
Q 024797          194 ALLRPGGTFIGTMP  207 (262)
Q Consensus       194 ~~L~~gG~li~~~~  207 (262)
                      ++|+|||.+++.++
T Consensus       129 ~~LkpgG~l~~~~~  142 (211)
T 3e23_A          129 RALKPGGLFYASYK  142 (211)
T ss_dssp             HHEEEEEEEEEEEE
T ss_pred             HhcCCCcEEEEEEc
Confidence            99999999999865

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.79  E-value=1.2e-18  Score=142.88  Aligned_cols=116  Identities=18%  Similarity=0.146  Sum_probs=89.0

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCcccc--cccc------CCCCCeEEEeCccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH--QRRK------KFSFPARLICGDCYEV  154 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~--~~~~------~~~~~v~~~~~d~~~~  154 (262)
                      .++.+|||+|||+|..+..+++.+. .|+|+|+|+.|++.|+++........  ....      ....+++++++|+.++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            4778999999999999998877654 89999999999999987653100000  0000      0135699999999988


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      +..    ..++||+|++..+++++  +.+++..+++++.++|+|||++++.
T Consensus       146 ~~~----~~~~FD~V~~~~~l~~l--~~~~~~~~l~~~~~~LkpGG~l~l~  190 (252)
T 2gb4_A          146 PRA----NIGKFDRIWDRGALVAI--NPGDHDRYADIILSLLRKEFQYLVA  190 (252)
T ss_dssp             GGG----CCCCEEEEEESSSTTTS--CGGGHHHHHHHHHHTEEEEEEEEEE
T ss_pred             Ccc----cCCCEEEEEEhhhhhhC--CHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            751    13799999999999988  5567788999999999999998643

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.79  E-value=6.7e-19  Score=144.40  Aligned_cols=109  Identities=20%  Similarity=0.285  Sum_probs=95.8

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++..            ..++.++++|+.++++     
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~------------~~~~~~~~~d~~~~~~-----  104 (253)
T 3g5l_A           42 DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT------------SPVVCYEQKAIEDIAI-----  104 (253)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC------------CTTEEEEECCGGGCCC-----
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc------------cCCeEEEEcchhhCCC-----
Confidence            34788999999999999998887665589999999999999999865            3469999999988876     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      ++++||+|++..+++|+    +++..+++++.++|+|||.++++++++..
T Consensus       105 ~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  150 (253)
T 3g5l_A          105 EPDAYNVVLSSLALHYI----ASFDDICKKVYINLKSSGSFIFSVEHPVF  150 (253)
T ss_dssp             CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             CCCCeEEEEEchhhhhh----hhHHHHHHHHHHHcCCCcEEEEEeCCCcc
Confidence            67899999999999998    66789999999999999999999888643

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.79  E-value=7.9e-19  Score=144.62  Aligned_cols=112  Identities=20%  Similarity=0.310  Sum_probs=93.5

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ++..+...++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|+++....+         ..++.+.++|+.+++
T Consensus        29 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~~---------~~~v~~~~~d~~~l~   98 (260)
T 1vl5_A           29 LMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNG---------HQQVEYVQGDAEQMP   98 (260)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTT---------CCSEEEEECCC-CCC
T ss_pred             HHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHhcC---------CCceEEEEecHHhCC
Confidence            4444556688999999999999888887654 489999999999999999876322         135899999999887


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +     ++++||+|++..+++|+    .++..++.++.++|+|||.+++..
T Consensus        99 ~-----~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A           99 F-----TDERFHIVTCRIAAHHF----PNPASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             S-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             C-----CCCCEEEEEEhhhhHhc----CCHHHHHHHHHHHcCCCCEEEEEE
Confidence            6     67899999999999998    567899999999999999999864

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.78  E-value=5.2e-18  Score=138.20  Aligned_cols=108  Identities=16%  Similarity=0.166  Sum_probs=91.5

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ++.+|||+|||+|.++..+++.....|+|+|+|+.+++.|+++....+         ..++.++++|+..++.     ++
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~~~~~~~d~~~~~~-----~~  144 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG---------KRVRNYFCCGLQDFTP-----EP  144 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG---------GGEEEEEECCGGGCCC-----CS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC---------CceEEEEEcChhhcCC-----CC
Confidence            578999999999999988876555689999999999999999876321         2348899999988775     56


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ++||+|++..+++|+  +.+....+++++.++|+|||.+++..+
T Consensus       145 ~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~  186 (241)
T 2ex4_A          145 DSYDVIWIQWVIGHL--TDQHLAEFLRRCKGSLRPNGIIVIKDN  186 (241)
T ss_dssp             SCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCEEEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence            789999999999998  555577999999999999999998654

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.78  E-value=8.8e-19  Score=142.61  Aligned_cols=109  Identities=24%  Similarity=0.345  Sum_probs=94.3

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...++.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|+++..            ..++.+.++|+..+++    
T Consensus        40 ~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~------------~~~~~~~~~d~~~~~~----  103 (243)
T 3bkw_A           40 PEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP------------DTGITYERADLDKLHL----  103 (243)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC------------SSSEEEEECCGGGCCC----
T ss_pred             cccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc------------cCCceEEEcChhhccC----
Confidence            345788999999999999988877655589999999999999998765            2358999999988765    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                       ++++||+|++..+++|+    ++...+++++.++|+|||.+++.+++..
T Consensus       104 -~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~~~  148 (243)
T 3bkw_A          104 -PQDSFDLAYSSLALHYV----EDVARLFRTVHQALSPGGHFVFSTEHPI  148 (243)
T ss_dssp             -CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             -CCCCceEEEEecccccc----chHHHHHHHHHHhcCcCcEEEEEeCCcc
Confidence             57899999999999998    4678999999999999999999998764

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.78  E-value=5.1e-18  Score=136.00  Aligned_cols=122  Identities=19%  Similarity=0.149  Sum_probs=94.2

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ++..+...++.+|||+|||+|.++..+++. +...++|+|+|+.+++.|++++...+...    ....++.++++|+...
T Consensus        21 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~~~~~v~~~~~d~~~~   96 (217)
T 3jwh_A           21 VVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPR----NQWERLQLIQGALTYQ   96 (217)
T ss_dssp             HHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCH----HHHTTEEEEECCTTSC
T ss_pred             HHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCc----ccCcceEEEeCCcccc
Confidence            333344467889999999999999988774 33589999999999999999876322110    0012699999998766


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      +.     +.++||+|++..+++|+  +.++...+++++.++|+|||.++++ ++.
T Consensus        97 ~~-----~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~li~~-~~~  143 (217)
T 3jwh_A           97 DK-----RFHGYDAATVIEVIEHL--DLSRLGAFERVLFEFAQPKIVIVTT-PNI  143 (217)
T ss_dssp             CG-----GGCSCSEEEEESCGGGC--CHHHHHHHHHHHHTTTCCSEEEEEE-EBH
T ss_pred             cc-----cCCCcCEEeeHHHHHcC--CHHHHHHHHHHHHHHcCCCEEEEEc-cCc
Confidence            54     45789999999999998  6667799999999999999955554 443

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.78  E-value=2.7e-18  Score=141.96  Aligned_cols=108  Identities=18%  Similarity=0.254  Sum_probs=93.2

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|+++....        +...+++++++|+.++++     
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~-----  110 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQS--------GLQNRVTGIVGSMDDLPF-----  110 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHT--------TCTTTEEEEECCTTSCCC-----
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHc--------CCCcCcEEEEcChhhCCC-----
Confidence            4678899999999999999988775668999999999999999987632        334569999999988876     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ++++||+|++..+++|+  +   +..+++++.++|+|||.+++..+
T Consensus       111 ~~~~fD~i~~~~~~~~~--~---~~~~l~~~~~~LkpgG~l~~~~~  151 (267)
T 3kkz_A          111 RNEELDLIWSEGAIYNI--G---FERGLNEWRKYLKKGGYLAVSEC  151 (267)
T ss_dssp             CTTCEEEEEESSCGGGT--C---HHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEcCCceec--C---HHHHHHHHHHHcCCCCEEEEEEe
Confidence            67899999999999987  3   57899999999999999998764

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.78  E-value=2.8e-18  Score=137.22  Aligned_cols=106  Identities=15%  Similarity=0.092  Sum_probs=90.5

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..++.. ..+++|+|+|+.+++.+++. .            ..++.++++|+.++ .     
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~-~------------~~~~~~~~~d~~~~-~-----  103 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMIAEAGRH-G------------LDNVEFRQQDLFDW-T-----  103 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHGGG-C------------CTTEEEEECCTTSC-C-----
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHhc-C------------CCCeEEEecccccC-C-----
Confidence            456779999999999999888776 44899999999999999872 1            24599999999877 3     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ++++||+|++..+++|+  +.+....+++++.++|+|||.+++..++.
T Consensus       104 ~~~~~D~v~~~~~l~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          104 PDRQWDAVFFAHWLAHV--PDDRFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             CSSCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             CCCceeEEEEechhhcC--CHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            67899999999999998  55567999999999999999999987654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.77  E-value=6.8e-19  Score=145.22  Aligned_cols=129  Identities=15%  Similarity=0.223  Sum_probs=95.6

Q ss_pred             HHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChh
Q 024797           39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG  118 (262)
Q Consensus        39 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~  118 (262)
                      +|+.++..|+.....               ...+...++..+...++.+|||+|||+|.++..+++ ...+|+|+|+|+.
T Consensus         4 ~y~~~a~~y~~~~~~---------------~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~   67 (261)
T 3ege_A            4 IYNSIGKQYSQTRVP---------------DIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALAN-QGLFVYAVEPSIV   67 (261)
T ss_dssp             ---------CCSBCC---------------CHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHT-TTCEEEEECSCHH
T ss_pred             HHHHHHHHHhhcccc---------------cHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHh-CCCEEEEEeCCHH
Confidence            678888888643221               112344455555556889999999999999998876 4458999999999


Q ss_pred             HHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCC
Q 024797          119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP  198 (262)
Q Consensus       119 ~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~  198 (262)
                      |++.++++.               ++.++++|+.++++     ++++||+|++..+++|+    .++..+++++.++|+ 
T Consensus        68 ~~~~a~~~~---------------~~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~Lk-  122 (261)
T 3ege_A           68 MRQQAVVHP---------------QVEWFTGYAENLAL-----PDKSVDGVISILAIHHF----SHLEKSFQEMQRIIR-  122 (261)
T ss_dssp             HHHSSCCCT---------------TEEEECCCTTSCCS-----CTTCBSEEEEESCGGGC----SSHHHHHHHHHHHBC-
T ss_pred             HHHHHHhcc---------------CCEEEECchhhCCC-----CCCCEeEEEEcchHhhc----cCHHHHHHHHHHHhC-
Confidence            998876543               49999999988876     67899999999999998    678899999999999 


Q ss_pred             CcEEEEEeCC
Q 024797          199 GGTFIGTMPD  208 (262)
Q Consensus       199 gG~li~~~~~  208 (262)
                      ||.+++..++
T Consensus       123 gG~~~~~~~~  132 (261)
T 3ege_A          123 DGTIVLLTFD  132 (261)
T ss_dssp             SSCEEEEEEC
T ss_pred             CcEEEEEEcC
Confidence            9988777654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.77  E-value=2.2e-18  Score=141.19  Aligned_cols=123  Identities=25%  Similarity=0.438  Sum_probs=98.2

Q ss_pred             hHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEE
Q 024797           68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI  147 (262)
Q Consensus        68 ~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~  147 (262)
                      ....++..++......++.+|||+|||+|.++..+++.+ ..|+|+|+|+.|++.|+++....          ..++.++
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~l~~a~~~~~~~----------~~~v~~~   93 (252)
T 1wzn_A           25 AEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG-YEVVGLDLHEEMLRVARRKAKER----------NLKIEFL   93 (252)
T ss_dssp             HHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHT----------TCCCEEE
T ss_pred             HHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCC-CeEEEEECCHHHHHHHHHHHHhc----------CCceEEE
Confidence            334556666665555677899999999999999887654 48999999999999999987632          2358999


Q ss_pred             eCcccccccccccCCCCCeeEEEEcc-cccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          148 CGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       148 ~~d~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ++|+.+++.      .++||+|++.+ .++|+  +.++...+++++.++|+|||.+++.+++.
T Consensus        94 ~~d~~~~~~------~~~fD~v~~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~li~~~~~~  148 (252)
T 1wzn_A           94 QGDVLEIAF------KNEFDAVTMFFSTIMYF--DEEDLRKLFSKVAEALKPGGVFITDFPCW  148 (252)
T ss_dssp             ESCGGGCCC------CSCEEEEEECSSGGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEC-
T ss_pred             ECChhhccc------CCCccEEEEcCCchhcC--CHHHHHHHHHHHHHHcCCCeEEEEeccch
Confidence            999988764      46899999875 44554  66788999999999999999999988763

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.77  E-value=1.4e-18  Score=142.72  Aligned_cols=117  Identities=21%  Similarity=0.251  Sum_probs=97.0

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +..++..+...++.+|||+|||+|..+..+++.....++|+|+|+.+++.|+++....        +...++.+.++|+.
T Consensus        25 ~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~--------~~~~~v~~~~~d~~   96 (256)
T 1nkv_A           25 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL--------GVSERVHFIHNDAA   96 (256)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHT--------TCTTTEEEEESCCT
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--------CCCcceEEEECChH
Confidence            4445555566788999999999999998887654458999999999999999987632        22346999999998


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +++.      +++||+|++..+++|+    .++..+++++.++|+|||.+++..+
T Consensus        97 ~~~~------~~~fD~V~~~~~~~~~----~~~~~~l~~~~r~LkpgG~l~~~~~  141 (256)
T 1nkv_A           97 GYVA------NEKCDVAACVGATWIA----GGFAGAEELLAQSLKPGGIMLIGEP  141 (256)
T ss_dssp             TCCC------SSCEEEEEEESCGGGT----SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             hCCc------CCCCCEEEECCChHhc----CCHHHHHHHHHHHcCCCeEEEEecC
Confidence            8753      5789999999999988    4678999999999999999999764

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.77  E-value=3.1e-18  Score=139.33  Aligned_cols=141  Identities=20%  Similarity=0.319  Sum_probs=106.7

Q ss_pred             HHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChh
Q 024797           39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG  118 (262)
Q Consensus        39 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~  118 (262)
                      .|+.+++.|+.....             .....|...++..+  .++.+|||+|||+|.++..+++.  .+++|+|+|+.
T Consensus         3 ~y~~~a~~yd~~~~~-------------~~~~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~   65 (243)
T 3d2l_A            3 AYEQFAYVYDELMQD-------------VPYPEWVAWVLEQV--EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEE   65 (243)
T ss_dssp             ---CTTHHHHHHTTT-------------CCHHHHHHHHHHHS--CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHH
T ss_pred             hHHHHHHHHHHhhhc-------------ccHHHHHHHHHHHc--CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHH
Confidence            466777788643211             12234444444433  46789999999999998888655  68999999999


Q ss_pred             HHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcc-cccccCCCHHHHHHHHHHHHhccC
Q 024797          119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSALLR  197 (262)
Q Consensus       119 ~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~L~  197 (262)
                      +++.|+++....          ..++.++++|+.+++.      .++||+|++.. +++|+ .+.++...+++++.++|+
T Consensus        66 ~~~~a~~~~~~~----------~~~~~~~~~d~~~~~~------~~~fD~v~~~~~~~~~~-~~~~~~~~~l~~~~~~L~  128 (243)
T 3d2l_A           66 MLEIAQEKAMET----------NRHVDFWVQDMRELEL------PEPVDAITILCDSLNYL-QTEADVKQTFDSAARLLT  128 (243)
T ss_dssp             HHHHHHHHHHHT----------TCCCEEEECCGGGCCC------SSCEEEEEECTTGGGGC-CSHHHHHHHHHHHHHHEE
T ss_pred             HHHHHHHhhhhc----------CCceEEEEcChhhcCC------CCCcCEEEEeCCchhhc-CCHHHHHHHHHHHHHhcC
Confidence            999999987521          2458999999988764      37899999987 88876 456788999999999999


Q ss_pred             CCcEEEEEeCChHHHH
Q 024797          198 PGGTFIGTMPDANVII  213 (262)
Q Consensus       198 ~gG~li~~~~~~~~~~  213 (262)
                      |||.+++++++...+.
T Consensus       129 pgG~l~~~~~~~~~~~  144 (243)
T 3d2l_A          129 DGGKLLFDVHSPYKME  144 (243)
T ss_dssp             EEEEEEEEEECHHHHH
T ss_pred             CCeEEEEEcCCHHHHH
Confidence            9999999999886643

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.77  E-value=5.8e-18  Score=135.81  Aligned_cols=117  Identities=19%  Similarity=0.204  Sum_probs=91.5

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      +...++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|++++...+...    ....+++++++|+...+.  
T Consensus        25 l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~~~~~v~~~~~d~~~~~~--   98 (219)
T 3jwg_A           25 LKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPE----MQRKRISLFQSSLVYRDK--   98 (219)
T ss_dssp             HHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCH----HHHTTEEEEECCSSSCCG--
T ss_pred             HhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhcccc----ccCcceEEEeCccccccc--
Confidence            334578899999999999999887643 3589999999999999999876321110    001269999999976665  


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                         +.++||+|++..+++|+  +.++...+++++.++|+|||.++ .+++
T Consensus        99 ---~~~~fD~V~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~~i-~~~~  142 (219)
T 3jwg_A           99 ---RFSGYDAATVIEVIEHL--DENRLQAFEKVLFEFTRPQTVIV-STPN  142 (219)
T ss_dssp             ---GGTTCSEEEEESCGGGC--CHHHHHHHHHHHHTTTCCSEEEE-EEEB
T ss_pred             ---ccCCCCEEEEHHHHHhC--CHHHHHHHHHHHHHhhCCCEEEE-Eccc
Confidence               46899999999999998  66677899999999999999555 4444

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.77  E-value=1.6e-18  Score=142.86  Aligned_cols=117  Identities=20%  Similarity=0.248  Sum_probs=99.9

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ...++..+...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++...           ..++.++++|+.
T Consensus        44 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~~~~~d~~  112 (266)
T 3ujc_A           44 TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSG-----------NNKIIFEANDIL  112 (266)
T ss_dssp             HHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCS-----------CTTEEEEECCTT
T ss_pred             HHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhc-----------CCCeEEEECccc
Confidence            444555555668889999999999999988775345899999999999999998752           156999999999


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ++++     ++++||+|++..+++|+  +..++..+++++.++|+|||.+++..+
T Consensus       113 ~~~~-----~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          113 TKEF-----PENNFDLIYSRDAILAL--SLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             TCCC-----CTTCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCC-----CCCcEEEEeHHHHHHhc--ChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            8876     67899999999999998  778999999999999999999998864

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.77  E-value=4.6e-18  Score=136.08  Aligned_cols=111  Identities=17%  Similarity=0.180  Sum_probs=93.7

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++...           ..++.++++|+.+++     
T Consensus        48 ~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~-----------~~~~~~~~~d~~~~~-----  110 (216)
T 3ofk_A           48 SSGAVSNGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKR-----------WSHISWAATDILQFS-----  110 (216)
T ss_dssp             TTSSEEEEEEECCTTSHHHHHHGGGE-EEEEEEESCHHHHHHHHHHTTT-----------CSSEEEEECCTTTCC-----
T ss_pred             ccCCCCcEEEEcCCCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHhccc-----------CCCeEEEEcchhhCC-----
Confidence            34567899999999999999887654 4899999999999999998763           226999999998876     


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                       ++++||+|++..+++|+ .+.+....+++++.++|+|||.++++++...
T Consensus       111 -~~~~fD~v~~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  158 (216)
T 3ofk_A          111 -TAELFDLIVVAEVLYYL-EDMTQMRTAIDNMVKMLAPGGHLVFGSARDA  158 (216)
T ss_dssp             -CSCCEEEEEEESCGGGS-SSHHHHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             -CCCCccEEEEccHHHhC-CCHHHHHHHHHHHHHHcCCCCEEEEEecCCC
Confidence             36899999999999997 3456678899999999999999999876554

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.77  E-value=1.1e-17  Score=137.78  Aligned_cols=142  Identities=18%  Similarity=0.175  Sum_probs=106.8

Q ss_pred             chhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEe
Q 024797           35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGID  114 (262)
Q Consensus        35 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD  114 (262)
                      .....++.+++.|+... ....         .......+..++.... .++.+|||+|||+|.++..+++. ...++|+|
T Consensus        16 ~~~~~~~~~a~~Yd~~~-~~~~---------~~~~~~~~~~~l~~~~-~~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD   83 (260)
T 2avn_A           16 RSWEFYDRIARAYDSMY-ETPK---------WKLYHRLIGSFLEEYL-KNPCRVLDLGGGTGKWSLFLQER-GFEVVLVD   83 (260)
T ss_dssp             CHHHHHHHHHHHHGGGG-CSHH---------HHHHHHHHHHHHHHHC-CSCCEEEEETCTTCHHHHHHHTT-TCEEEEEE
T ss_pred             hhcchhhHHHHHHHHhc-cccc---------hhHHHHHHHHHHHHhc-CCCCeEEEeCCCcCHHHHHHHHc-CCeEEEEe
Confidence            45678999999997544 1111         1122223344444433 37789999999999999988765 34899999


Q ss_pred             CChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHh
Q 024797          115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA  194 (262)
Q Consensus       115 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~  194 (262)
                      +|+.|++.|+++..               ..++++|+.++++     ++++||+|++..++.|+..   ++..+++++.+
T Consensus        84 ~s~~~l~~a~~~~~---------------~~~~~~d~~~~~~-----~~~~fD~v~~~~~~~~~~~---~~~~~l~~~~~  140 (260)
T 2avn_A           84 PSKEMLEVAREKGV---------------KNVVEAKAEDLPF-----PSGAFEAVLALGDVLSYVE---NKDKAFSEIRR  140 (260)
T ss_dssp             SCHHHHHHHHHHTC---------------SCEEECCTTSCCS-----CTTCEEEEEECSSHHHHCS---CHHHHHHHHHH
T ss_pred             CCHHHHHHHHhhcC---------------CCEEECcHHHCCC-----CCCCEEEEEEcchhhhccc---cHHHHHHHHHH
Confidence            99999999998754               1278999988775     6789999999887766532   27889999999


Q ss_pred             ccCCCcEEEEEeCChHH
Q 024797          195 LLRPGGTFIGTMPDANV  211 (262)
Q Consensus       195 ~L~~gG~li~~~~~~~~  211 (262)
                      +|+|||.+++.+++...
T Consensus       141 ~LkpgG~l~~~~~~~~~  157 (260)
T 2avn_A          141 VLVPDGLLIATVDNFYT  157 (260)
T ss_dssp             HEEEEEEEEEEEEBHHH
T ss_pred             HcCCCeEEEEEeCChHH
Confidence            99999999999988753

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.77  E-value=2.7e-18  Score=141.85  Aligned_cols=136  Identities=17%  Similarity=0.200  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHh---ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccc----------
Q 024797           69 LNNWIKSVLVQLY---ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQ----------  135 (262)
Q Consensus        69 ~~~~~~~~l~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~----------  135 (262)
                      ..+|....+..+.   ..++.+|||||||+|.++..++..+..+|+|+|+|+.|++.|++++........          
T Consensus        37 ~~~~~~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~  116 (263)
T 2a14_A           37 MLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACE  116 (263)
T ss_dssp             HHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHh
Confidence            5667766665543   346789999999999877766555555799999999999999987653210000          


Q ss_pred             ----------cccCCCCCeE-EEeCccccc-ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          136 ----------RRKKFSFPAR-LICGDCYEV-HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       136 ----------~~~~~~~~v~-~~~~d~~~~-~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                                .......++. ++++|+.+. ++...  ..++||+|++++++||+..+.++...++++++++|||||.|+
T Consensus       117 ~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~--~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li  194 (263)
T 2a14_A          117 LEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPA--VLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLV  194 (263)
T ss_dssp             HTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTC--CCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             cCCCCcchhhHHHHHHhhhheEEeccccCCCCCCcc--ccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEE
Confidence                      0000011243 889998773 22100  256899999999999976667888999999999999999999


Q ss_pred             EEe
Q 024797          204 GTM  206 (262)
Q Consensus       204 ~~~  206 (262)
                      ++.
T Consensus       195 ~~~  197 (263)
T 2a14_A          195 TTV  197 (263)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.77  E-value=2.2e-18  Score=144.72  Aligned_cols=118  Identities=19%  Similarity=0.152  Sum_probs=98.0

Q ss_pred             HHHHHHHH----hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe
Q 024797           73 IKSVLVQL----YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC  148 (262)
Q Consensus        73 ~~~~l~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~  148 (262)
                      ...++..+    ...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++....        +...++.+++
T Consensus        67 ~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------~~~~~~~~~~  138 (297)
T 2o57_A           67 DEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA--------GLADNITVKY  138 (297)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHH--------TCTTTEEEEE
T ss_pred             HHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhc--------CCCcceEEEE
Confidence            34455555    45678899999999999999887653348999999999999999987532        2345699999


Q ss_pred             CcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       149 ~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +|+.++++     ++++||+|++..+++|+    .++..+++++.++|+|||.+++..+
T Consensus       139 ~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          139 GSFLEIPC-----EDNSYDFIWSQDAFLHS----PDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             CCTTSCSS-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCcccCCC-----CCCCEeEEEecchhhhc----CCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            99998876     67899999999999998    4478999999999999999998864

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.77  E-value=1.3e-18  Score=142.77  Aligned_cols=141  Identities=11%  Similarity=0.010  Sum_probs=101.5

Q ss_pred             hhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeC
Q 024797           36 TKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDI  115 (262)
Q Consensus        36 ~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~  115 (262)
                      ..+.|+.++..|.+.....             ....|+..++..+...++.+|||+|||+|.++..+++.. ..|+|+|+
T Consensus        10 ~a~~wd~~a~~f~~~~~~~-------------~~~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g-~~V~gvD~   75 (261)
T 3iv6_A           10 KAEAWELIGNQFWTIGRVA-------------ARPSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERG-ASVTVFDF   75 (261)
T ss_dssp             THHHHHTTTTHHHHTSCGG-------------GSCCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTT-CEEEEEES
T ss_pred             hhhHHHHHHHHHHHHhhcc-------------ccHHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcC-CEEEEEEC
Confidence            4467777777776432211             012345556666667788999999999999999887654 48999999


Q ss_pred             ChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhc
Q 024797          116 AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL  195 (262)
Q Consensus       116 s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~  195 (262)
                      |+.|++.|+++....               +++.++.+.+.......+++||+|+++.+++|+  ..++...++.++.++
T Consensus        76 S~~ml~~Ar~~~~~~---------------~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~--~~~~~~~~l~~l~~l  138 (261)
T 3iv6_A           76 SQRMCDDLAEALADR---------------CVTIDLLDITAEIPKELAGHFDFVLNDRLINRF--TTEEARRACLGMLSL  138 (261)
T ss_dssp             CHHHHHHHHHHTSSS---------------CCEEEECCTTSCCCGGGTTCCSEEEEESCGGGS--CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhc---------------cceeeeeecccccccccCCCccEEEEhhhhHhC--CHHHHHHHHHHHHHh
Confidence            999999999987621               223333332210000025789999999999998  677888999999999


Q ss_pred             cCCCcEEEEEeCC
Q 024797          196 LRPGGTFIGTMPD  208 (262)
Q Consensus       196 L~~gG~li~~~~~  208 (262)
                      | |||.++++++.
T Consensus       139 L-PGG~l~lS~~~  150 (261)
T 3iv6_A          139 V-GSGTVRASVKL  150 (261)
T ss_dssp             H-TTSEEEEEEEB
T ss_pred             C-cCcEEEEEecc
Confidence            9 99999998753

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.77  E-value=3.8e-18  Score=140.07  Aligned_cols=108  Identities=19%  Similarity=0.223  Sum_probs=92.7

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|..+..+++....+|+|+|+|+.+++.|+++....        +...++.++++|+.++++     
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~~~~~~~~~~d~~~~~~-----  110 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKA--------NCADRVKGITGSMDNLPF-----  110 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHT--------TCTTTEEEEECCTTSCSS-----
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHc--------CCCCceEEEECChhhCCC-----
Confidence            4577899999999999999988765559999999999999999987742        234469999999988876     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ++++||+|++..+++|+  +   ...+++++.++|+|||.+++..+
T Consensus       111 ~~~~fD~v~~~~~l~~~--~---~~~~l~~~~~~L~pgG~l~~~~~  151 (257)
T 3f4k_A          111 QNEELDLIWSEGAIYNI--G---FERGMNEWSKYLKKGGFIAVSEA  151 (257)
T ss_dssp             CTTCEEEEEEESCSCCC--C---HHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             CCCCEEEEEecChHhhc--C---HHHHHHHHHHHcCCCcEEEEEEe
Confidence            67899999999999987  2   57899999999999999999864

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.76  E-value=9.2e-18  Score=133.49  Aligned_cols=111  Identities=14%  Similarity=0.181  Sum_probs=93.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|..+..++.....+++|+|+|+.|++.|+++....          ..++.+.++|+.++++     
T Consensus        21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~~~d~~~~~~-----   85 (209)
T 2p8j_A           21 SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN----------NFKLNISKGDIRKLPF-----   85 (209)
T ss_dssp             SSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH----------TCCCCEEECCTTSCCS-----
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc----------CCceEEEECchhhCCC-----
Confidence            3567899999999999865554444558999999999999999887521          2358899999988775     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ++++||+|++..+++|+  +.+++..+++++.++|+|||.+++.+++.
T Consensus        86 ~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  131 (209)
T 2p8j_A           86 KDESMSFVYSYGTIFHM--RKNDVKEAIDEIKRVLKPGGLACINFLTT  131 (209)
T ss_dssp             CTTCEEEEEECSCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             CCCceeEEEEcChHHhC--CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence            67899999999999988  67889999999999999999999987654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.75  E-value=1.4e-17  Score=132.88  Aligned_cols=120  Identities=19%  Similarity=0.217  Sum_probs=99.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..+++....+++|+|+|+.+++.++++...           ..++.++++|+.++++     +
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~-----------~~~i~~~~~d~~~~~~-----~  104 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH-----------VPQLRWETMDVRKLDF-----P  104 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT-----------CTTCEEEECCTTSCCS-----C
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc-----------CCCcEEEEcchhcCCC-----C
Confidence            67889999999999999988776555899999999999999998752           2358999999988765     5


Q ss_pred             CCCeeEEEEcccccccC-----------CCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797          163 DAPFDICSCQFAMHYSW-----------STEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE  218 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~-----------~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~  218 (262)
                      +++||+|++..+++++.           ....+...+++++.++|+|||.+++.+++...+...+..
T Consensus       105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~  171 (215)
T 2pxx_A          105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYA  171 (215)
T ss_dssp             SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCHHHHHHHHC
T ss_pred             CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCcHHHHHHHh
Confidence            78999999998887662           114678999999999999999999999887665555443

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.75  E-value=4.7e-18  Score=136.24  Aligned_cols=115  Identities=19%  Similarity=0.183  Sum_probs=96.3

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      .++..+...++.+|||+|||+|.++..+++.  +..+|+|+|+|+.+++.++++....+         ..++.++++|+.
T Consensus        28 ~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~~~~~~~d~~   98 (219)
T 3dh0_A           28 KVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLG---------LKNVEVLKSEEN   98 (219)
T ss_dssp             HHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHT---------CTTEEEEECBTT
T ss_pred             HHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC---------CCcEEEEecccc
Confidence            3455555678889999999999999988774  34589999999999999999876321         125999999998


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ++++     ++++||+|++..+++|+    .++..+++++.++|+|||.+++..+
T Consensus        99 ~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~i~~~  144 (219)
T 3dh0_A           99 KIPL-----PDNTVDFIFMAFTFHEL----SEPLKFLEELKRVAKPFAYLAIIDW  144 (219)
T ss_dssp             BCSS-----CSSCEEEEEEESCGGGC----SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCC-----CCCCeeEEEeehhhhhc----CCHHHHHHHHHHHhCCCeEEEEEEe
Confidence            8776     67899999999999998    5678999999999999999998753

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.75  E-value=8e-18  Score=141.68  Aligned_cols=120  Identities=16%  Similarity=0.100  Sum_probs=97.6

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      .+..++..+...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++....        +...++.+.++|+
T Consensus        60 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~--------~~~~~v~~~~~d~  131 (302)
T 3hem_A           60 KRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEV--------DSPRRKEVRIQGW  131 (302)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHS--------CCSSCEEEEECCG
T ss_pred             HHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc--------CCCCceEEEECCH
Confidence            34455555556788899999999999999888762368999999999999999988732        3345699999998


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCC-----CHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWS-----TEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-----~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .++        +++||+|++..+++|+.+     +.++...+++++.++|+|||.+++...
T Consensus       132 ~~~--------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          132 EEF--------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             GGC--------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             HHc--------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            764        478999999999999843     225678999999999999999998764

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.75  E-value=6.7e-18  Score=137.43  Aligned_cols=113  Identities=21%  Similarity=0.356  Sum_probs=94.8

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      .+..+...++.+|||+|||+|.++..++... ..|+|+|+|+.+++.++++....+         ..++.+.++|+..++
T Consensus        13 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~---------~~~v~~~~~d~~~~~   82 (239)
T 1xxl_A           13 MIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKG---------VENVRFQQGTAESLP   82 (239)
T ss_dssp             HHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHT---------CCSEEEEECBTTBCC
T ss_pred             HHHHhCcCCCCEEEEEccCcCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcC---------CCCeEEEecccccCC
Confidence            4455567788999999999999988887654 489999999999999998875321         135899999998877


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +     ++++||+|++..+++|+    .++..++.++.++|+|||.+++..+
T Consensus        83 ~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~  125 (239)
T 1xxl_A           83 F-----PDDSFDIITCRYAAHHF----SDVRKAVREVARVLKQDGRFLLVDH  125 (239)
T ss_dssp             S-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             C-----CCCcEEEEEECCchhhc----cCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            6     67899999999999998    5678999999999999999998753

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.75  E-value=4.5e-18  Score=136.74  Aligned_cols=146  Identities=17%  Similarity=0.193  Sum_probs=104.9

Q ss_pred             cchhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEE
Q 024797           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGI  113 (262)
Q Consensus        34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gv  113 (262)
                      .....+|+..++.|++.......         ......+...++..+...++.+|||+|||+|.++..++.. ..+|+|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~v   80 (227)
T 3e8s_A           11 DALLDSWHQNAQAWIDAVRHGAI---------ESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADR-GIEAVGV   80 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCC---------HHHHHTHHHHHHHHHHHTCCSEEEEETCTTCHHHHHHHTT-TCEEEEE
T ss_pred             HHHHHHHHhhHHHHHHHhccccc---------ccccccccHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHC-CCEEEEE
Confidence            34567888888888753221100         0111112334455555567799999999999999888766 4489999


Q ss_pred             eCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHH
Q 024797          114 DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVS  193 (262)
Q Consensus       114 D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~  193 (262)
                      |+|+.+++.|+++.               ++.+.++|+.++.... ..+..+||+|++..+++ .    .++..+++++.
T Consensus        81 D~s~~~~~~a~~~~---------------~~~~~~~~~~~~~~~~-~~~~~~fD~v~~~~~l~-~----~~~~~~l~~~~  139 (227)
T 3e8s_A           81 DGDRTLVDAARAAG---------------AGEVHLASYAQLAEAK-VPVGKDYDLICANFALL-H----QDIIELLSAMR  139 (227)
T ss_dssp             ESCHHHHHHHHHTC---------------SSCEEECCHHHHHTTC-SCCCCCEEEEEEESCCC-S----SCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHhc---------------ccccchhhHHhhcccc-cccCCCccEEEECchhh-h----hhHHHHHHHHH
Confidence            99999999999862               2678888887762110 01345699999999998 4    45678999999


Q ss_pred             hccCCCcEEEEEeCChH
Q 024797          194 ALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       194 ~~L~~gG~li~~~~~~~  210 (262)
                      ++|+|||.+++.+++..
T Consensus       140 ~~L~pgG~l~~~~~~~~  156 (227)
T 3e8s_A          140 TLLVPGGALVIQTLHPW  156 (227)
T ss_dssp             HTEEEEEEEEEEECCTT
T ss_pred             HHhCCCeEEEEEecCcc
Confidence            99999999999988653

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.75  E-value=2.3e-17  Score=138.01  Aligned_cols=122  Identities=18%  Similarity=0.176  Sum_probs=85.7

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccc--------ccc-ccCC------------CC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADH--------HQR-RKKF------------SF  142 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~--------~~~-~~~~------------~~  142 (262)
                      ++.+|||+|||+|.....++......|+|+|+|+.|++.|++++......        +-. ....            ..
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            67899999999998444333334558999999999999999876421000        000 0000            00


Q ss_pred             CeEEEeCcccc-cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          143 PARLICGDCYE-VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       143 ~v~~~~~d~~~-~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .+.++++|+.+ +++.....++++||+|+++++++|+..+.+++..+++++.++|||||.|++.
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~  214 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLI  214 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            14577789877 5542211245779999999999996444578999999999999999999886

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.74  E-value=1e-17  Score=138.21  Aligned_cols=103  Identities=24%  Similarity=0.372  Sum_probs=88.4

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|+++..              ++.++++|+.+++.      
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~------  107 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSF-GTVEGLELSADMLAIARRRNP--------------DAVLHHGDMRDFSL------  107 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTS-SEEEEEESCHHHHHHHHHHCT--------------TSEEEECCTTTCCC------
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcC-CeEEEEECCHHHHHHHHhhCC--------------CCEEEECChHHCCc------
Confidence            466899999999999999887653 489999999999999998754              48999999988764      


Q ss_pred             CCCeeEEEEcc-cccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          163 DAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       163 ~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +++||+|++.. +++|+ .+.++...+++++.++|+|||.+++...
T Consensus       108 ~~~fD~v~~~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~i~~~  152 (263)
T 3pfg_A          108 GRRFSAVTCMFSSIGHL-AGQAELDAALERFAAHVLPDGVVVVEPW  152 (263)
T ss_dssp             SCCEEEEEECTTGGGGS-CHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             cCCcCEEEEcCchhhhc-CCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            68899999998 99987 3446788999999999999999999743

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.74  E-value=7.7e-18  Score=137.09  Aligned_cols=104  Identities=21%  Similarity=0.274  Sum_probs=88.7

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc--cccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~  160 (262)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.++++                 +.++++|+.+.  ++    
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~-----------------~~~~~~d~~~~~~~~----   97 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK-----------------FNVVKSDAIEYLKSL----   97 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT-----------------SEEECSCHHHHHHTS----
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh-----------------cceeeccHHHHhhhc----
Confidence            5678999999999999988876543 799999999999999864                 56788888765  44    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                       ++++||+|++..+++|+  +.++...+++++.++|+|||.+++.+++...
T Consensus        98 -~~~~fD~i~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  145 (240)
T 3dli_A           98 -PDKYLDGVMISHFVEHL--DPERLFELLSLCYSKMKYSSYIVIESPNPTS  145 (240)
T ss_dssp             -CTTCBSEEEEESCGGGS--CGGGHHHHHHHHHHHBCTTCCEEEEEECTTS
T ss_pred             -CCCCeeEEEECCchhhC--CcHHHHHHHHHHHHHcCCCcEEEEEeCCcch
Confidence             57899999999999998  5556799999999999999999999887653

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.74  E-value=2.9e-17  Score=138.03  Aligned_cols=125  Identities=19%  Similarity=0.218  Sum_probs=98.1

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      +...++..+. .++.+|||+|||+|.++..+++.. ..|+|+|+|+.+++.|+++....+..      ...++.++++|+
T Consensus        71 ~~~~~~~~~~-~~~~~vLDlGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~------~~~~v~~~~~d~  142 (299)
T 3g2m_A           71 EAREFATRTG-PVSGPVLELAAGMGRLTFPFLDLG-WEVTALELSTSVLAAFRKRLAEAPAD------VRDRCTLVQGDM  142 (299)
T ss_dssp             HHHHHHHHHC-CCCSCEEEETCTTTTTHHHHHTTT-CCEEEEESCHHHHHHHHHHHHTSCHH------HHTTEEEEECBT
T ss_pred             HHHHHHHhhC-CCCCcEEEEeccCCHHHHHHHHcC-CeEEEEECCHHHHHHHHHHHhhcccc------cccceEEEeCch
Confidence            3444444443 344599999999999999887663 47999999999999999988732110      014699999999


Q ss_pred             cccccccccCCCCCeeEEEEc-ccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          152 YEVHLDKVLADDAPFDICSCQ-FAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~-~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      .+++.      +++||+|++. .+++|+  +.++...+++++.++|+|||.|++.+++....
T Consensus       143 ~~~~~------~~~fD~v~~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  196 (299)
T 3g2m_A          143 SAFAL------DKRFGTVVISSGSINEL--DEADRRGLYASVREHLEPGGKFLLSLAMSEAA  196 (299)
T ss_dssp             TBCCC------SCCEEEEEECHHHHTTS--CHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred             hcCCc------CCCcCEEEECCcccccC--CHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence            98764      6889999876 556665  66788999999999999999999999887664

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.74  E-value=1.5e-17  Score=134.98  Aligned_cols=105  Identities=26%  Similarity=0.372  Sum_probs=88.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..+++... +++|+|+|+.|++.|+++..              ++.++++|+.+++.      
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~------   97 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLP--------------DATLHQGDMRDFRL------   97 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHCT--------------TCEEEECCTTTCCC------
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhCC--------------CCEEEECCHHHccc------
Confidence            5778999999999999998876543 89999999999999998754              38899999988753      


Q ss_pred             CCCeeEEEEcc-cccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          163 DAPFDICSCQF-AMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       163 ~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      +++||+|+|.. +++|+ .+.++...+++++.++|+|||.++++.++.
T Consensus        98 ~~~~D~v~~~~~~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~  144 (239)
T 3bxo_A           98 GRKFSAVVSMFSSVGYL-KTTEELGAAVASFAEHLEPGGVVVVEPWWF  144 (239)
T ss_dssp             SSCEEEEEECTTGGGGC-CSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred             CCCCcEEEEcCchHhhc-CCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence            57899999655 78776 455788999999999999999999987554

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.74  E-value=1.6e-17  Score=140.57  Aligned_cols=108  Identities=15%  Similarity=0.239  Sum_probs=92.9

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++....        ++..++.++++|+.++++     
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~-----  181 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAREL--------RIDDHVRSRVCNMLDTPF-----  181 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT--------TCTTTEEEEECCTTSCCC-----
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--------CCCCceEEEECChhcCCC-----
Confidence            4578899999999999999887753458999999999999999987742        234569999999998876     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ++++||+|++..+++|+  +   +..+++++.++|+|||.+++.++
T Consensus       182 ~~~~fD~V~~~~~l~~~--~---~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          182 DKGAVTASWNNESTMYV--D---LHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             CTTCEEEEEEESCGGGS--C---HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCEeEEEECCchhhC--C---HHHHHHHHHHHcCCCcEEEEEEc
Confidence            67899999999999987  3   78999999999999999998764

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.73  E-value=1.8e-17  Score=138.38  Aligned_cols=118  Identities=17%  Similarity=0.181  Sum_probs=95.5

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +..++..+...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++....        +...++.+.++|+.
T Consensus        53 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~--------~~~~~~~~~~~d~~  124 (287)
T 1kpg_A           53 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS--------ENLRSKRVLLAGWE  124 (287)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC--------CCCSCEEEEESCGG
T ss_pred             HHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc--------CCCCCeEEEECChh
Confidence            3444545556678899999999999999887533348999999999999999987632        22346899999986


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ++       + ++||+|++..+++|+  +.+++..+++++.++|+|||.+++..+.
T Consensus       125 ~~-------~-~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~  170 (287)
T 1kpg_A          125 QF-------D-EPVDRIVSIGAFEHF--GHERYDAFFSLAHRLLPADGVMLLHTIT  170 (287)
T ss_dssp             GC-------C-CCCSEEEEESCGGGT--CTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             hC-------C-CCeeEEEEeCchhhc--ChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence            54       3 789999999999998  4466889999999999999999987653

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.73  E-value=1.2e-17  Score=138.97  Aligned_cols=109  Identities=26%  Similarity=0.434  Sum_probs=92.7

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ++..+...++.+|||+|||+|.++..++. ....|+|+|+|+.|++.++++..              ++.+.++|+..++
T Consensus        49 l~~~l~~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~  113 (279)
T 3ccf_A           49 LLQLLNPQPGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNYP--------------HLHFDVADARNFR  113 (279)
T ss_dssp             HHHHHCCCTTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHCT--------------TSCEEECCTTTCC
T ss_pred             HHHHhCCCCCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhCC--------------CCEEEECChhhCC
Confidence            34444456788999999999999998877 55689999999999999998753              4889999998876


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      +      +++||+|++..+++|+    .++..+++++.++|+|||.+++.+++.
T Consensus       114 ~------~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~l~~~~~~~  157 (279)
T 3ccf_A          114 V------DKPLDAVFSNAMLHWV----KEPEAAIASIHQALKSGGRFVAEFGGK  157 (279)
T ss_dssp             C------SSCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             c------CCCcCEEEEcchhhhC----cCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence            4      5789999999999998    567899999999999999999988754

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.73  E-value=8.3e-18  Score=146.22  Aligned_cols=115  Identities=23%  Similarity=0.330  Sum_probs=91.2

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-----
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-----  154 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-----  154 (262)
                      ..++.+|||+|||+|..+..+++.  +..+|+|+|+|+.+++.|++++........ ......++.++++|+.++     
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-g~~~~~~v~~~~~d~~~l~~~~~  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFF-GSPSRSNVRFLKGFIENLATAEP  159 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHH-SSTTCCCEEEEESCTTCGGGCBS
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcc-cccCCCceEEEEccHHHhhhccc
Confidence            457889999999999998888764  456899999999999999987642100000 000124699999999886     


Q ss_pred             -ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          155 -HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       155 -~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                       ++     ++++||+|+++.+++|+    .++..+++++.++|||||+|++..
T Consensus       160 ~~~-----~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          160 EGV-----PDSSVDIVISNCVCNLS----TNKLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             CCC-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCC-----CCCCEEEEEEccchhcC----CCHHHHHHHHHHHcCCCCEEEEEE
Confidence             44     67899999999999998    557899999999999999999875

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.73  E-value=7.2e-17  Score=126.60  Aligned_cols=112  Identities=17%  Similarity=0.105  Sum_probs=91.4

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|++++...        +. .+++++++|+.++...   .+
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~-~~v~~~~~d~~~~~~~---~~  110 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEAL--------GL-SGATLRRGAVAAVVAA---GT  110 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHH--------TC-SCEEEEESCHHHHHHH---CC
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc--------CC-CceEEEEccHHHHHhh---cc
Confidence            578899999999999998777766668999999999999999987632        22 4699999999876421   03


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHh--ccCCCcEEEEEeCCh
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPDA  209 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~--~L~~gG~li~~~~~~  209 (262)
                      +++||+|+++..+++   ..++...++..+.+  +|+|||.+++..+..
T Consensus       111 ~~~fD~i~~~~p~~~---~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~  156 (189)
T 3p9n_A          111 TSPVDLVLADPPYNV---DSADVDAILAALGTNGWTREGTVAVVERATT  156 (189)
T ss_dssp             SSCCSEEEECCCTTS---CHHHHHHHHHHHHHSSSCCTTCEEEEEEETT
T ss_pred             CCCccEEEECCCCCc---chhhHHHHHHHHHhcCccCCCeEEEEEecCC
Confidence            678999999887765   24678899999999  999999999987654

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.73  E-value=6.1e-17  Score=130.31  Aligned_cols=111  Identities=26%  Similarity=0.398  Sum_probs=93.1

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..++.... +++|+|+|+.+++.|+++....          ..+++++++|+.++++     +
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~~~d~~~~~~-----~  100 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSR----------ESNVEFIVGDARKLSF-----E  100 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT----------TCCCEEEECCTTSCCS-----C
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhc----------CCCceEEECchhcCCC-----C
Confidence            4578999999999999988876544 8999999999999999987521          2468999999988765     5


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      +++||+|++..++++.  ...+...+++++.++|+|||.+++..++...
T Consensus       101 ~~~~D~v~~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~  147 (227)
T 1ve3_A          101 DKTFDYVIFIDSIVHF--EPLELNQVFKEVRRVLKPSGKFIMYFTDLRE  147 (227)
T ss_dssp             TTCEEEEEEESCGGGC--CHHHHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             CCcEEEEEEcCchHhC--CHHHHHHHHHHHHHHcCCCcEEEEEecChHH
Confidence            6899999999985544  4578899999999999999999999887644

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.73  E-value=2e-17  Score=134.41  Aligned_cols=110  Identities=19%  Similarity=0.170  Sum_probs=87.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc--ccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~~~  159 (262)
                      ..++.+|||+|||+|.++..++.....+|+|+|+|+.|++.|+++....          ..++.++++|+.++  ++   
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~----------~~~v~~~~~d~~~~~~~~---  124 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ----------THKVIPLKGLWEDVAPTL---  124 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC----------SSEEEEEESCHHHHGGGS---
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhc----------CCCeEEEecCHHHhhccc---
Confidence            4578899999999999998886655558999999999999999987621          34689999999887  55   


Q ss_pred             cCCCCCeeEEEE-cccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          160 LADDAPFDICSC-QFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       160 ~~~~~~fD~V~~-~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                        ++++||+|++ .+.+........+...++++++++|||||++++..
T Consensus       125 --~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          125 --PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             --CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             --CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEe
Confidence              6789999999 55432111123566788999999999999998754

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.72  E-value=7.6e-18  Score=136.93  Aligned_cols=108  Identities=19%  Similarity=0.138  Sum_probs=86.1

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||||||+|..+..+++....+++|||+|+.+++.|+++....          ..++.++.+|+......   .
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~----------~~~~~~~~~~a~~~~~~---~  124 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ----------THKVIPLKGLWEDVAPT---L  124 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGC----------SSEEEEEESCHHHHGGG---S
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhC----------CCceEEEeehHHhhccc---c
Confidence            4678899999999998888887655568999999999999999987632          44578889988654321   1


Q ss_pred             CCCCeeEEEEc-----ccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          162 DDAPFDICSCQ-----FAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       162 ~~~~fD~V~~~-----~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ++++||.|+..     ..++|.    .+...++++++|+|||||+|++..
T Consensus       125 ~~~~FD~i~~D~~~~~~~~~~~----~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          125 PDGHFDGILYDTYPLSEETWHT----HQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             CTTCEEEEEECCCCCBGGGTTT----HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             cccCCceEEEeeeecccchhhh----cchhhhhhhhhheeCCCCEEEEEe
Confidence            67889999853     344555    788999999999999999998753

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.72  E-value=1.5e-17  Score=134.84  Aligned_cols=117  Identities=18%  Similarity=0.215  Sum_probs=93.4

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +..++..... ++.+|||+|||+|.++..++. ....|+|+|+|+.+++.|+++....        ....++.++++|+.
T Consensus        56 l~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~  125 (235)
T 3lcc_A           56 IVHLVDTSSL-PLGRALVPGCGGGHDVVAMAS-PERFVVGLDISESALAKANETYGSS--------PKAEYFSFVKEDVF  125 (235)
T ss_dssp             HHHHHHTTCS-CCEEEEEETCTTCHHHHHHCB-TTEEEEEECSCHHHHHHHHHHHTTS--------GGGGGEEEECCCTT
T ss_pred             HHHHHHhcCC-CCCCEEEeCCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHHHhhcc--------CCCcceEEEECchh
Confidence            3334433332 445999999999999988865 4447999999999999999988632        12346999999998


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +++      ++++||+|++..+++|+  +.++...+++++.++|+|||.+++...
T Consensus       126 ~~~------~~~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~  172 (235)
T 3lcc_A          126 TWR------PTELFDLIFDYVFFCAI--EPEMRPAWAKSMYELLKPDGELITLMY  172 (235)
T ss_dssp             TCC------CSSCEEEEEEESSTTTS--CGGGHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCC------CCCCeeEEEEChhhhcC--CHHHHHHHHHHHHHHCCCCcEEEEEEe
Confidence            865      35699999999999998  556889999999999999999988654

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.72  E-value=5.6e-17  Score=126.66  Aligned_cols=126  Identities=13%  Similarity=0.129  Sum_probs=92.4

Q ss_pred             hhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEE
Q 024797           67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL  146 (262)
Q Consensus        67 ~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~  146 (262)
                      .....+.+.++.. ...++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|+++....        +. .++++
T Consensus         6 ~~~~~~~~~~l~~-~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~--------~~-~~v~~   74 (185)
T 3mti_A            6 KRPIHMSHDFLAE-VLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDL--------GI-ENTEL   74 (185)
T ss_dssp             CCHHHHHHHHHHT-TCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHH--------TC-CCEEE
T ss_pred             HhHHHHHHHHHHH-hCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHc--------CC-CcEEE
Confidence            3444555555543 3467899999999999999988766 668999999999999999988632        22 46899


Q ss_pred             EeCcccccccccccCCCCCeeEEEEccc-ccc----cCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          147 ICGDCYEVHLDKVLADDAPFDICSCQFA-MHY----SWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       147 ~~~d~~~~~~~~~~~~~~~fD~V~~~~~-l~~----~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ++.++..++..    .+++||+|+++.. +++    +.........+++++.++|+|||.+++.+.
T Consensus        75 ~~~~~~~l~~~----~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           75 ILDGHENLDHY----VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             EESCGGGGGGT----CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EeCcHHHHHhh----ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            99887765421    4678999988732 221    011346677889999999999999988765

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.72  E-value=2.1e-17  Score=135.79  Aligned_cols=111  Identities=20%  Similarity=0.263  Sum_probs=93.6

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ..++..+...++.+|||+|||+|.++..++.. +..+++|+|+|+.|++.++++..              ++.++++|+.
T Consensus        23 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~--------------~~~~~~~d~~   88 (259)
T 2p35_A           23 RDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLP--------------NTNFGKADLA   88 (259)
T ss_dssp             HHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHST--------------TSEEEECCTT
T ss_pred             HHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCC--------------CcEEEECChh
Confidence            34555555567889999999999999888764 35589999999999999998733              4889999998


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +++      ++++||+|++..+++|+    +++..+++++.++|+|||.+++.+++
T Consensus        89 ~~~------~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~  134 (259)
T 2p35_A           89 TWK------PAQKADLLYANAVFQWV----PDHLAVLSQLMDQLESGGVLAVQMPD  134 (259)
T ss_dssp             TCC------CSSCEEEEEEESCGGGS----TTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred             hcC------ccCCcCEEEEeCchhhC----CCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence            765      36789999999999998    56889999999999999999998864

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.72  E-value=4.2e-17  Score=130.91  Aligned_cols=132  Identities=17%  Similarity=0.228  Sum_probs=100.3

Q ss_pred             chhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEe
Q 024797           35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGID  114 (262)
Q Consensus        35 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD  114 (262)
                      .+..+|+..++.|+.......           ......+. .+...  .++.+|||+|||+|.++..++..     +|+|
T Consensus        12 ~~~~~~~~~~~~y~~~~~~~~-----------~~~~~~~~-~l~~~--~~~~~vLDiG~G~G~~~~~l~~~-----~~vD   72 (219)
T 1vlm_A           12 HMWHIFERFVNEYERWFLVHR-----------FAYLSELQ-AVKCL--LPEGRGVEIGVGTGRFAVPLKIK-----IGVE   72 (219)
T ss_dssp             CTTHHHHHTHHHHHHHHHHTH-----------HHHHHHHH-HHHHH--CCSSCEEEETCTTSTTHHHHTCC-----EEEE
T ss_pred             hheeecchhHHHHHHHHHhcc-----------hhHHHHHH-HHHHh--CCCCcEEEeCCCCCHHHHHHHHH-----hccC
Confidence            455688888888875432211           11111122 22222  24789999999999998887543     9999


Q ss_pred             CChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHh
Q 024797          115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA  194 (262)
Q Consensus       115 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~  194 (262)
                      +|+.+++.++++ .               +.++++|+..+++     ++++||+|++..+++|+    +++..+++++.+
T Consensus        73 ~s~~~~~~a~~~-~---------------~~~~~~d~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~  127 (219)
T 1vlm_A           73 PSERMAEIARKR-G---------------VFVLKGTAENLPL-----KDESFDFALMVTTICFV----DDPERALKEAYR  127 (219)
T ss_dssp             SCHHHHHHHHHT-T---------------CEEEECBTTBCCS-----CTTCEEEEEEESCGGGS----SCHHHHHHHHHH
T ss_pred             CCHHHHHHHHhc-C---------------CEEEEcccccCCC-----CCCCeeEEEEcchHhhc----cCHHHHHHHHHH
Confidence            999999999875 2               7889999988775     57899999999999998    557899999999


Q ss_pred             ccCCCcEEEEEeCChH
Q 024797          195 LLRPGGTFIGTMPDAN  210 (262)
Q Consensus       195 ~L~~gG~li~~~~~~~  210 (262)
                      +|+|||.+++.+++..
T Consensus       128 ~L~pgG~l~i~~~~~~  143 (219)
T 1vlm_A          128 ILKKGGYLIVGIVDRE  143 (219)
T ss_dssp             HEEEEEEEEEEEECSS
T ss_pred             HcCCCcEEEEEEeCCc
Confidence            9999999999887653

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.72  E-value=2.1e-17  Score=137.13  Aligned_cols=109  Identities=23%  Similarity=0.378  Sum_probs=93.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|+++....+         ..++.++++|+..+++    
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~~~~~~~d~~~~~~----  101 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNG---------IKNVKFLQANIFSLPF----  101 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---------CCSEEEEECCGGGCCS----
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---------CCCcEEEEcccccCCC----
Confidence            3578899999999999998887753 5689999999999999999876322         2359999999998876    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                       ++++||+|++..+++|+    .++..+++++.++|+|||.+++..++
T Consensus       102 -~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~  144 (276)
T 3mgg_A          102 -EDSSFDHIFVCFVLEHL----QSPEEALKSLKKVLKPGGTITVIEGD  144 (276)
T ss_dssp             -CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -CCCCeeEEEEechhhhc----CCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence             67899999999999998    45678999999999999999997643

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.72  E-value=3.7e-17  Score=128.84  Aligned_cols=108  Identities=16%  Similarity=0.137  Sum_probs=89.7

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...++.+|||+|||+|.++..++.. ..+++|+|+|+.+++.++++....+         ..++.+.++|+.+++.    
T Consensus        29 ~~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~~~~~~~d~~~~~~----   94 (199)
T 2xvm_A           29 KVVKPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIEN---------LDNLHTRVVDLNNLTF----   94 (199)
T ss_dssp             TTSCSCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHT---------CTTEEEEECCGGGCCC----
T ss_pred             hccCCCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCC---------CCCcEEEEcchhhCCC----
Confidence            3456789999999999999888766 3489999999999999998875311         1258999999988653    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                        +++||+|++..+++|+  +.++...+++++.++|+|||.+++..
T Consensus        95 --~~~~D~v~~~~~l~~~--~~~~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A           95 --DRQYDFILSTVVLMFL--EAKTIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             --CCCEEEEEEESCGGGS--CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --CCCceEEEEcchhhhC--CHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence              5789999999999998  55578999999999999999977653

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.72  E-value=3.5e-17  Score=137.56  Aligned_cols=112  Identities=14%  Similarity=0.186  Sum_probs=90.6

Q ss_pred             hccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ...++.+|||+|||+|..+..++.  ....+|+|+|+|+.+++.|+++....       .+...++.++++|+.++++..
T Consensus        33 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------~~~~~~v~~~~~d~~~~~~~~  105 (299)
T 3g5t_A           33 HDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS-------PDTYKNVSFKISSSDDFKFLG  105 (299)
T ss_dssp             CCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC-------C-CCTTEEEEECCTTCCGGGC
T ss_pred             hcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc-------cCCCCceEEEEcCHHhCCccc
Confidence            345788999999999999999886  45678999999999999999987631       012457999999999887621


Q ss_pred             -ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          159 -VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       159 -~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                       .....++||+|++..+++|+     ++..+++++.++|+|||.+++
T Consensus       106 ~~~~~~~~fD~V~~~~~l~~~-----~~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          106 ADSVDKQKIDMITAVECAHWF-----DFEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             TTTTTSSCEEEEEEESCGGGS-----CHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccCCCeeEEeHhhHHHHh-----CHHHHHHHHHHhcCCCcEEEE
Confidence             00012799999999999986     467899999999999999987

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.72  E-value=4.1e-17  Score=136.17  Aligned_cols=107  Identities=21%  Similarity=0.331  Sum_probs=92.2

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-C-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++.+|||+|||+|..+..++.. + ..+|+|+|+|+.+++.|+++....          +.++.+.++|+.++++   
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------~~~v~~~~~d~~~~~~---   86 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----------PYDSEFLEGDATEIEL---   86 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS----------SSEEEEEESCTTTCCC---
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc----------CCceEEEEcchhhcCc---
Confidence            357889999999999999888764 2 358999999999999999987632          3369999999998764   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                         +++||+|++..+++|+    .+...+++++.++|+|||.+++..++
T Consensus        87 ---~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           87 ---NDKYDIAICHAFLLHM----TTPETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             ---SSCEEEEEEESCGGGC----SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             ---CCCeeEEEECChhhcC----CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence               4689999999999998    56689999999999999999998887

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.72  E-value=1.9e-17  Score=135.10  Aligned_cols=112  Identities=12%  Similarity=0.052  Sum_probs=90.7

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..+++... +|+|+|+|+.|++.|+++..            ..++.++++|+.+++......
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~------------~~~~~~~~~d~~~~~~~~~~~  120 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT------------AANISYRLLDGLVPEQAAQIH  120 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC------------CTTEEEEECCTTCHHHHHHHH
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc------------ccCceEEECcccccccccccc
Confidence            35778999999999999999877555 89999999999999999875            336999999998865421110


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ....||+|++..+++|+  +.++...+++++.++|+|||.+++....
T Consensus       121 ~~~~~d~v~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          121 SEIGDANIYMRTGFHHI--PVEKRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             HHHCSCEEEEESSSTTS--CGGGHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             cccCccEEEEcchhhcC--CHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            11348999999999998  5557899999999999999997776543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.72  E-value=1.4e-16  Score=132.01  Aligned_cols=114  Identities=16%  Similarity=0.035  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHH-hcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWD-KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~-~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      .++.-+......++.+|||||||+|.++..++ +....+|+|+|+|++|++.|++++...        +. .+++++++|
T Consensus       110 l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~--------gl-~~v~~v~gD  180 (298)
T 3fpf_A          110 LLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL--------GV-DGVNVITGD  180 (298)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH--------TC-CSEEEEESC
T ss_pred             HHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc--------CC-CCeEEEECc
Confidence            33333444556789999999999998765443 335568999999999999999987632        23 569999999


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +.+++       +++||+|++....       ++..++++++.++|||||++++...+
T Consensus       181 a~~l~-------d~~FDvV~~~a~~-------~d~~~~l~el~r~LkPGG~Lvv~~~~  224 (298)
T 3fpf_A          181 ETVID-------GLEFDVLMVAALA-------EPKRRVFRNIHRYVDTETRIIYRTYT  224 (298)
T ss_dssp             GGGGG-------GCCCSEEEECTTC-------SCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred             hhhCC-------CCCcCEEEECCCc-------cCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence            98753       5789999986542       45788999999999999999987754

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.71  E-value=6.3e-17  Score=136.40  Aligned_cols=113  Identities=20%  Similarity=0.303  Sum_probs=93.7

Q ss_pred             HhccCCCeEEEecCCCCcchHHHH--hcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWD--KAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~--~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      ....++.+|||+|||+|..+..++  ..+..+|+|+|+|+.+++.|+++....        +...+++++++|+.++++ 
T Consensus       114 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~-  184 (305)
T 3ocj_A          114 RHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH--------ALAGQITLHRQDAWKLDT-  184 (305)
T ss_dssp             HHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS--------TTGGGEEEEECCGGGCCC-
T ss_pred             hhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc--------CCCCceEEEECchhcCCc-
Confidence            345688999999999999988874  344568999999999999999998743        223459999999998875 


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                          + ++||+|++..+++|+ ++......+++++.++|+|||.+++...
T Consensus       185 ----~-~~fD~v~~~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~~  228 (305)
T 3ocj_A          185 ----R-EGYDLLTSNGLNIYE-PDDARVTELYRRFWQALKPGGALVTSFL  228 (305)
T ss_dssp             ----C-SCEEEEECCSSGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             ----c-CCeEEEEECChhhhc-CCHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence                4 899999999999886 4555566799999999999999999873

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.71  E-value=5.8e-17  Score=137.35  Aligned_cols=118  Identities=12%  Similarity=0.130  Sum_probs=95.9

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +..++..+...++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++....        +...++.+.++|+.
T Consensus        79 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~  150 (318)
T 2fk8_A           79 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASI--------DTNRSRQVLLQGWE  150 (318)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTS--------CCSSCEEEEESCGG
T ss_pred             HHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------CCCCceEEEECChH
Confidence            3444444555678899999999999998887652348999999999999999987632        22346899999986


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +++        ++||+|++..+++|+  +.+++..+++++.++|+|||.+++.++.
T Consensus       151 ~~~--------~~fD~v~~~~~l~~~--~~~~~~~~l~~~~~~LkpgG~l~~~~~~  196 (318)
T 2fk8_A          151 DFA--------EPVDRIVSIEAFEHF--GHENYDDFFKRCFNIMPADGRMTVQSSV  196 (318)
T ss_dssp             GCC--------CCCSEEEEESCGGGT--CGGGHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             HCC--------CCcCEEEEeChHHhc--CHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            642        689999999999998  5567899999999999999999988753

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.71  E-value=1.9e-17  Score=127.50  Aligned_cols=102  Identities=15%  Similarity=0.233  Sum_probs=86.9

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      +...++.+|||+|||+|.++..+++... +++|+|+|+.+++.++++..              ++.+.++|   .++   
T Consensus        13 ~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~--------------~v~~~~~d---~~~---   71 (170)
T 3i9f_A           13 IFEGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEKFD--------------SVITLSDP---KEI---   71 (170)
T ss_dssp             HHSSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHHCT--------------TSEEESSG---GGS---
T ss_pred             cCcCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHhCC--------------CcEEEeCC---CCC---
Confidence            3456788999999999999998876543 89999999999999998732              48899998   444   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                        ++++||+|++..+++|+    +++..+++++.++|+|||.+++..+.
T Consensus        72 --~~~~~D~v~~~~~l~~~----~~~~~~l~~~~~~L~pgG~l~~~~~~  114 (170)
T 3i9f_A           72 --PDNSVDFILFANSFHDM----DDKQHVISEVKRILKDDGRVIIIDWR  114 (170)
T ss_dssp             --CTTCEEEEEEESCSTTC----SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             --CCCceEEEEEccchhcc----cCHHHHHHHHHHhcCCCCEEEEEEcC
Confidence              57899999999999998    56789999999999999999988643

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.71  E-value=1.2e-16  Score=129.12  Aligned_cols=116  Identities=20%  Similarity=0.242  Sum_probs=94.8

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.++++....+...    ....++.+.++|+..+++     
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~-----   97 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQ----KTGGKAEFKVENASSLSF-----   97 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCS----SSSCEEEEEECCTTSCCS-----
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCcc----ccCcceEEEEecccccCC-----
Confidence            357889999999999999988776 4489999999999999999887433211    112358999999988876     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ++++||+|++..+++|+ .+......+++++.++|+|||.+++..+.
T Consensus        98 ~~~~~D~v~~~~~l~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~~~  143 (235)
T 3sm3_A           98 HDSSFDFAVMQAFLTSV-PDPKERSRIIKEVFRVLKPGAYLYLVEFG  143 (235)
T ss_dssp             CTTCEEEEEEESCGGGC-CCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             CCCceeEEEEcchhhcC-CCHHHHHHHHHHHHHHcCCCeEEEEEECC
Confidence            67899999999999987 34555669999999999999999998653

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.71  E-value=1.7e-16  Score=145.96  Aligned_cols=134  Identities=17%  Similarity=0.204  Sum_probs=104.8

Q ss_pred             chhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCC
Q 024797           66 LKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP  143 (262)
Q Consensus        66 ~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  143 (262)
                      ......++..++..+...++.+|||+|||+|.++..+++..  ...|+|+|+|+.|++.|++++......  . .....+
T Consensus       703 PPL~eqRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnA--k-r~gl~n  779 (950)
T 3htx_A          703 PPLSKQRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNK--E-ACNVKS  779 (950)
T ss_dssp             SCHHHHHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTT--T-CSSCSE
T ss_pred             chHHHHHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccch--h-hcCCCc
Confidence            34444556666666666688999999999999999887654  258999999999999999865421000  0 011246


Q ss_pred             eEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       144 v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      ++++++|+.+++.     ++++||+|++..+++|+  +......+++++.++|+|| .+++++|+.+
T Consensus       780 VefiqGDa~dLp~-----~d~sFDlVV~~eVLeHL--~dp~l~~~L~eI~RvLKPG-~LIISTPN~e  838 (950)
T 3htx_A          780 ATLYDGSILEFDS-----RLHDVDIGTCLEVIEHM--EEDQACEFGEKVLSLFHPK-LLIVSTPNYE  838 (950)
T ss_dssp             EEEEESCTTSCCT-----TSCSCCEEEEESCGGGS--CHHHHHHHHHHHHHTTCCS-EEEEEECBGG
T ss_pred             eEEEECchHhCCc-----ccCCeeEEEEeCchhhC--ChHHHHHHHHHHHHHcCCC-EEEEEecCch
Confidence            9999999999876     67899999999999999  6666678999999999999 9999998864

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.71  E-value=7.4e-17  Score=134.64  Aligned_cols=106  Identities=16%  Similarity=0.171  Sum_probs=90.6

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..+++.+. .|+|+|+|+.+++.|+++....          +.++.++++|+.+.+.     
T Consensus       118 ~~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~~~d~~~~~~-----  181 (286)
T 3m70_A          118 IISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKE----------NLNISTALYDINAANI-----  181 (286)
T ss_dssp             HSCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT----------TCCEEEEECCGGGCCC-----
T ss_pred             ccCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHc----------CCceEEEEeccccccc-----
Confidence            34788999999999999998877644 8999999999999999987632          2269999999988763     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                       +++||+|++..+++|+  +.+....+++++.++|+|||.+++..
T Consensus       182 -~~~fD~i~~~~~~~~~--~~~~~~~~l~~~~~~LkpgG~l~i~~  223 (286)
T 3m70_A          182 -QENYDFIVSTVVFMFL--NRERVPSIIKNMKEHTNVGGYNLIVA  223 (286)
T ss_dssp             -CSCEEEEEECSSGGGS--CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -cCCccEEEEccchhhC--CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence             6889999999999998  66678899999999999999977654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.71  E-value=9.6e-17  Score=132.15  Aligned_cols=123  Identities=14%  Similarity=0.169  Sum_probs=90.1

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCcccc-----------cc---------ccCCCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH-----------QR---------RKKFSF  142 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-----------~~---------~~~~~~  142 (262)
                      .++.+|||+|||+|.++..++......|+|+|+|+.|++.|++++...+...           ..         ...+..
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            4567999999999999888766554589999999999999998876321000           00         000001


Q ss_pred             Ce-EEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          143 PA-RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       143 ~v-~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ++ .+.++|+.+...... ...++||+|++..+++++....+++..+++++.++|+|||.+++..
T Consensus       135 ~v~~~~~~d~~~~~~~~~-~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGG-VSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             HEEEEEECCTTSSSTTTT-CCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hheeEEEeeeccCCCCCc-cccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEe
Confidence            26 899999887542100 0227899999999999665555789999999999999999999875

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.71  E-value=7.4e-17  Score=135.20  Aligned_cols=127  Identities=21%  Similarity=0.273  Sum_probs=92.7

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccc-----------------------------
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADH-----------------------------  133 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----------------------------  133 (262)
                      ++.+|||||||+|.++..++.. +..+|+|+|+|+.|++.|++++...+..                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            6789999999999999988875 4568999999999999999987643211                             


Q ss_pred             --------------------cccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccC--CCHHHHHHHHHH
Q 024797          134 --------------------HQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW--STEARARRALAN  191 (262)
Q Consensus       134 --------------------~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~~~~~l~~  191 (262)
                                          +......+.++.|.++|+............++||+|+|..+++|+.  .+.+.+..++++
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~  205 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR  205 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence                                0011123357999999987644110111468999999999997651  023478899999


Q ss_pred             HHhccCCCcEEEEEeCChH
Q 024797          192 VSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       192 ~~~~L~~gG~li~~~~~~~  210 (262)
                      ++++|+|||+|++......
T Consensus       206 ~~~~LkpGG~lil~~~~~~  224 (292)
T 3g07_A          206 IYRHLRPGGILVLEPQPWS  224 (292)
T ss_dssp             HHHHEEEEEEEEEECCCHH
T ss_pred             HHHHhCCCcEEEEecCCch
Confidence            9999999999999876543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.70  E-value=2.3e-16  Score=123.58  Aligned_cols=106  Identities=25%  Similarity=0.314  Sum_probs=91.3

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..++.. ..+++|+|+|+.+++.++++..              ++.++++|+.++++     
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~~--------------~~~~~~~d~~~~~~-----  103 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDFP--------------EARWVVGDLSVDQI-----  103 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHCT--------------TSEEEECCTTTSCC-----
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhCC--------------CCcEEEcccccCCC-----
Confidence            467889999999999999888766 4489999999999999998764              38899999988765     


Q ss_pred             CCCCeeEEEEc-ccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          162 DDAPFDICSCQ-FAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       162 ~~~~fD~V~~~-~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ++++||+|++. .+++|+  +.++...++.++.++|+|||.+++.+++.
T Consensus       104 ~~~~~D~i~~~~~~~~~~--~~~~~~~~l~~~~~~l~~~G~l~~~~~~~  150 (195)
T 3cgg_A          104 SETDFDLIVSAGNVMGFL--AEDGREPALANIHRALGADGRAVIGFGAG  150 (195)
T ss_dssp             CCCCEEEEEECCCCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             CCCceeEEEECCcHHhhc--ChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence            56889999998 678776  67778999999999999999999987653

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.70  E-value=1.8e-16  Score=124.96  Aligned_cols=127  Identities=19%  Similarity=0.271  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeE
Q 024797           68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR  145 (262)
Q Consensus        68 ~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~  145 (262)
                      ....+...++ .....++.+|||+|||+|.++..+++.  +.++|+|+|+|+.+++.|++++...+        ...++.
T Consensus         7 ~~~~~~~~~~-~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--------~~~~v~   77 (197)
T 3eey_A            7 NSLGQSHDYI-KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLN--------LIDRVT   77 (197)
T ss_dssp             CHHHHHHHHH-HHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTT--------CGGGEE
T ss_pred             hHHHHHHHHH-HhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------CCCCeE
Confidence            3333344333 334577889999999999999988775  45689999999999999999887422        234699


Q ss_pred             EEeCcccccccccccCCCCCeeEEEEcccc-----cccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          146 LICGDCYEVHLDKVLADDAPFDICSCQFAM-----HYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       146 ~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l-----~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ++++|+.+++..    .+++||+|+++..+     +.......+...+++++.++|+|||.+++...
T Consensus        78 ~~~~d~~~~~~~----~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           78 LIKDGHQNMDKY----IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             EECSCGGGGGGT----CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEECCHHHHhhh----ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            999998877521    45889999988755     11223456777899999999999999998864

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.70  E-value=6.3e-17  Score=135.59  Aligned_cols=115  Identities=9%  Similarity=-0.030  Sum_probs=81.5

Q ss_pred             cCCCeEEEecCCCCcchHHHH----hc-CCCe--EEEEeCChhHHHHHHHHhccCccccccccCCCCCe--EEEeCcccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWD----KA-KIGY--YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA--RLICGDCYE  153 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~----~~-~~~~--v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v--~~~~~d~~~  153 (262)
                      .++.+|||||||+|.++..++    .. +...  ++|+|+|++|++.|+++....        ....++  .+.++++.+
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~--------~~~~~v~~~~~~~~~~~  122 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKT--------SNLENVKFAWHKETSSE  122 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTC--------SSCTTEEEEEECSCHHH
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhc--------cCCCcceEEEEecchhh
Confidence            456799999999997654332    22 3333  499999999999999987521        011234  345666554


Q ss_pred             ccccc-ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          154 VHLDK-VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       154 ~~~~~-~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ++... ..+++++||+|++..+++|+    +++..++++++++|||||.+++...+.
T Consensus       123 ~~~~~~~~~~~~~fD~V~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~~~~  175 (292)
T 2aot_A          123 YQSRMLEKKELQKWDFIHMIQMLYYV----KDIPATLKFFHSLLGTNAKMLIIVVSG  175 (292)
T ss_dssp             HHHHHHTTTCCCCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred             hhhhhccccCCCceeEEEEeeeeeec----CCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            33100 00146889999999999998    678899999999999999999876543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.70  E-value=7.8e-16  Score=122.28  Aligned_cols=114  Identities=18%  Similarity=0.197  Sum_probs=90.9

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ++..+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++....        +...++.++++|+.+..
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~--------g~~~~v~~~~~d~~~~~  117 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTY--------GLSPRMRAVQGTAPAAL  117 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHT--------TCTTTEEEEESCTTGGG
T ss_pred             HHHhcCCCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--------CCCCCEEEEeCchhhhc
Confidence            444555678899999999999999988876 668999999999999999987632        22336999999998732


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      .     ..+.||+|++..++.        .. +++++.++|+|||.+++.....+.+
T Consensus       118 ~-----~~~~~D~v~~~~~~~--------~~-~l~~~~~~LkpgG~lv~~~~~~~~~  160 (204)
T 3njr_A          118 A-----DLPLPEAVFIGGGGS--------QA-LYDRLWEWLAPGTRIVANAVTLESE  160 (204)
T ss_dssp             T-----TSCCCSEEEECSCCC--------HH-HHHHHHHHSCTTCEEEEEECSHHHH
T ss_pred             c-----cCCCCCEEEECCccc--------HH-HHHHHHHhcCCCcEEEEEecCcccH
Confidence            2     345799999877441        34 8999999999999999998876544

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.69  E-value=1.9e-16  Score=125.25  Aligned_cols=107  Identities=14%  Similarity=0.140  Sum_probs=88.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++ +|||+|||+|.++..+++.. .+++|+|+|+.+++.|+++....          ..++.+.++|+.++++     +
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~----------~~~~~~~~~d~~~~~~-----~   91 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASLG-YEVTAVDQSSVGLAKAKQLAQEK----------GVKITTVQSNLADFDI-----V   91 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHH----------TCCEEEECCBTTTBSC-----C
T ss_pred             CCC-CEEEECCCCCHhHHHHHhCC-CeEEEEECCHHHHHHHHHHHHhc----------CCceEEEEcChhhcCC-----C
Confidence            456 99999999999998887653 48999999999999999987521          2258999999988775     5


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      +++||+|++..  .|+  ..++...+++++.++|+|||.+++.+++..
T Consensus        92 ~~~fD~v~~~~--~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~  135 (202)
T 2kw5_A           92 ADAWEGIVSIF--CHL--PSSLRQQLYPKVYQGLKPGGVFILEGFAPE  135 (202)
T ss_dssp             TTTCSEEEEEC--CCC--CHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred             cCCccEEEEEh--hcC--CHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence            78999999853  344  667899999999999999999999986543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.69  E-value=5.4e-16  Score=121.38  Aligned_cols=122  Identities=17%  Similarity=0.217  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCC-CeEEEeC
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICG  149 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~v~~~~~  149 (262)
                      .....++..+...++.+|||+|||+|.++..+++. ..+++|+|+|+.+++.++++....+        ... ++.++++
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~  109 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNN--------LDNYDIRVVHS  109 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTT--------CTTSCEEEEEC
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcC--------CCccceEEEEC
Confidence            34444555555567889999999999999988776 5689999999999999999876321        111 3899999


Q ss_pred             cccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       150 d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      |+.+..      ++++||+|+++..+++   .......+++++.++|+|||.+++.+++..
T Consensus       110 d~~~~~------~~~~~D~v~~~~~~~~---~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~  161 (194)
T 1dus_A          110 DLYENV------KDRKYNKIITNPPIRA---GKEVLHRIIEEGKELLKDNGEIWVVIQTKQ  161 (194)
T ss_dssp             STTTTC------TTSCEEEEEECCCSTT---CHHHHHHHHHHHHHHEEEEEEEEEEEESTH
T ss_pred             chhccc------ccCCceEEEECCCccc---chhHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence            987742      4678999999888775   346788999999999999999999988754

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.69  E-value=5.1e-16  Score=120.14  Aligned_cols=119  Identities=14%  Similarity=0.090  Sum_probs=91.1

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      +...++..+...++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.|++++...        +...++ ++++|
T Consensus        13 ~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~~-~~~~d   83 (178)
T 3hm2_A           13 VRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL--------GVSDRI-AVQQG   83 (178)
T ss_dssp             HHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTT--------TCTTSE-EEECC
T ss_pred             HHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHh--------CCCCCE-EEecc
Confidence            3445555666678889999999999999988765 3557999999999999999987642        223357 88888


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      +.+ .+..   ..++||+|++..++++        ..+++++.++|+|||.+++.....+.
T Consensus        84 ~~~-~~~~---~~~~~D~i~~~~~~~~--------~~~l~~~~~~L~~gG~l~~~~~~~~~  132 (178)
T 3hm2_A           84 APR-AFDD---VPDNPDVIFIGGGLTA--------PGVFAAAWKRLPVGGRLVANAVTVES  132 (178)
T ss_dssp             TTG-GGGG---CCSCCSEEEECC-TTC--------TTHHHHHHHTCCTTCEEEEEECSHHH
T ss_pred             hHh-hhhc---cCCCCCEEEECCcccH--------HHHHHHHHHhcCCCCEEEEEeecccc
Confidence            754 2210   2378999999998875        56889999999999999998876543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.68  E-value=1.8e-16  Score=127.23  Aligned_cols=117  Identities=20%  Similarity=0.309  Sum_probs=89.6

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-ccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~  159 (262)
                      ..++.+|||||||+|.++..+++. +...|+|+|+|+.+++.|+++....+         ..++.++++|+.++ +.  .
T Consensus        32 ~~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~---------l~nv~~~~~Da~~~l~~--~  100 (218)
T 3dxy_A           32 GREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEG---------LSNLRVMCHDAVEVLHK--M  100 (218)
T ss_dssp             SSCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTT---------CSSEEEECSCHHHHHHH--H
T ss_pred             CCCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhC---------CCcEEEEECCHHHHHHH--H
Confidence            457789999999999999998864 45579999999999999999876432         23599999998774 20  0


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHH------HHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARA------RRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~------~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                       .++++||.|++.+...+.  .....      ..++.++.++|+|||.+++.+.+....
T Consensus       101 -~~~~~~d~v~~~~~~p~~--~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~  156 (218)
T 3dxy_A          101 -IPDNSLRMVQLFFPDPWH--KARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYA  156 (218)
T ss_dssp             -SCTTCEEEEEEESCCCCC--SGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHH
T ss_pred             -cCCCChheEEEeCCCCcc--chhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHH
Confidence             167899999988654432  11111      259999999999999999998876543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.68  E-value=4.9e-16  Score=124.27  Aligned_cols=118  Identities=13%  Similarity=0.161  Sum_probs=89.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+|||+|.++..+++. +...++|+|+|+.+++.|+++....+         ..++.++++|+.+++.  . 
T Consensus        36 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~---------~~nv~~~~~d~~~l~~--~-  103 (213)
T 2fca_A           36 GNDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSE---------AQNVKLLNIDADTLTD--V-  103 (213)
T ss_dssp             TSCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSC---------CSSEEEECCCGGGHHH--H-
T ss_pred             CCCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcC---------CCCEEEEeCCHHHHHh--h-
Confidence            356789999999999999998774 45689999999999999999876322         2359999999987541  0 


Q ss_pred             CCCCCeeEEEEcccccccCCC----HHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          161 ADDAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      .+++.||.|++.+...+....    .-....+++++.++|+|||.+++.+.+...
T Consensus       104 ~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~  158 (213)
T 2fca_A          104 FEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGL  158 (213)
T ss_dssp             CCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHH
T ss_pred             cCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence            157889999887654322000    001367899999999999999999877643

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.67  E-value=4.5e-16  Score=133.06  Aligned_cols=119  Identities=22%  Similarity=0.225  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC
Q 024797           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (262)
Q Consensus        70 ~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (262)
                      ..|.+.+.......++.+|||+|||+|.++..+++.+..+|+|+|+|+ |++.|+++....        +...+++++++
T Consensus        50 ~~~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~--------~~~~~i~~~~~  120 (340)
T 2fyt_A           50 ESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLN--------KLEDTITLIKG  120 (340)
T ss_dssp             HHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHT--------TCTTTEEEEES
T ss_pred             HHHHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHc--------CCCCcEEEEEe
Confidence            344455555555678889999999999999888876666899999997 999999887632        33457999999


Q ss_pred             cccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       150 d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                      |+.++++     ++++||+|++......+ ........++.++.++|+|||.++
T Consensus       121 d~~~~~~-----~~~~~D~Ivs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          121 KIEEVHL-----PVEKVDVIISEWMGYFL-LFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             CTTTSCC-----SCSCEEEEEECCCBTTB-TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             eHHHhcC-----CCCcEEEEEEcCchhhc-cCHHHHHHHHHHHHhhcCCCcEEE
Confidence            9998876     56899999987632111 123567889999999999999987

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.67  E-value=9.1e-16  Score=127.32  Aligned_cols=125  Identities=14%  Similarity=0.038  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHHh-ccCCCeEEEecCCC---CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCe
Q 024797           70 NNWIKSVLVQLY-ARRGDVVLDLACGK---GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA  144 (262)
Q Consensus        70 ~~~~~~~l~~~~-~~~~~~vLDiGcG~---G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v  144 (262)
                      +.|+..++..+. .....+|||||||+   |.++..+.+. +..+|+++|+|+.|++.|++++..           ..++
T Consensus        62 ~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~-----------~~~v  130 (274)
T 2qe6_A           62 RKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK-----------DPNT  130 (274)
T ss_dssp             HHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-----------CTTE
T ss_pred             hHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-----------CCCe
Confidence            445555555544 23447999999999   9766555442 456899999999999999998752           2469


Q ss_pred             EEEeCcccccccc-------cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          145 RLICGDCYEVHLD-------KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       145 ~~~~~d~~~~~~~-------~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .++++|+.+....       .. .+..+||+|++..++||+  +.+++..++++++++|+|||+|+++...
T Consensus       131 ~~~~~D~~~~~~~~~~~~~~~~-~d~~~~d~v~~~~vlh~~--~d~~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          131 AVFTADVRDPEYILNHPDVRRM-IDFSRPAAIMLVGMLHYL--SPDVVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             EEEECCTTCHHHHHHSHHHHHH-CCTTSCCEEEETTTGGGS--CTTTHHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             EEEEeeCCCchhhhccchhhcc-CCCCCCEEEEEechhhhC--CcHHHHHHHHHHHHhCCCCcEEEEEEec
Confidence            9999999764210       01 133589999999999998  3335889999999999999999988654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.67  E-value=5.6e-16  Score=123.37  Aligned_cols=111  Identities=16%  Similarity=0.142  Sum_probs=90.6

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ...++..+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|++++...+         ..++++.++|+.
T Consensus        66 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~---------~~~v~~~~~d~~  135 (210)
T 3lbf_A           66 VARMTELLELTPQSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLD---------LHNVSTRHGDGW  135 (210)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTT---------CCSEEEEESCGG
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcC---------CCceEEEECCcc
Confidence            344455556678899999999999999888776 5689999999999999999886322         125999999997


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +...     +.++||+|++..+++|+.          ..+.++|+|||++++.+++
T Consensus       136 ~~~~-----~~~~~D~i~~~~~~~~~~----------~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          136 QGWQ-----ARAPFDAIIVTAAPPEIP----------TALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             GCCG-----GGCCEEEEEESSBCSSCC----------THHHHTEEEEEEEEEEECS
T ss_pred             cCCc-----cCCCccEEEEccchhhhh----------HHHHHhcccCcEEEEEEcC
Confidence            7544     467899999999999872          2588999999999999887

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.67  E-value=1.3e-15  Score=120.81  Aligned_cols=114  Identities=13%  Similarity=-0.006  Sum_probs=91.7

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ++..+...++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|+++....        +. .+++++++|+.+.
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------~~-~~v~~~~~d~~~~  102 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF--------VA-RNVTLVEAFAPEG  102 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH--------TC-TTEEEEECCTTTT
T ss_pred             HHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--------CC-CcEEEEeCChhhh
Confidence            4455566788999999999999999887753 568999999999999999987632        11 4589999998654


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      ..     ..+.||+|++..+++       +...+++++.++|+|||.+++..+..+
T Consensus       103 ~~-----~~~~~D~i~~~~~~~-------~~~~~l~~~~~~LkpgG~l~~~~~~~~  146 (204)
T 3e05_A          103 LD-----DLPDPDRVFIGGSGG-------MLEEIIDAVDRRLKSEGVIVLNAVTLD  146 (204)
T ss_dssp             CT-----TSCCCSEEEESCCTT-------CHHHHHHHHHHHCCTTCEEEEEECBHH
T ss_pred             hh-----cCCCCCEEEECCCCc-------CHHHHHHHHHHhcCCCeEEEEEecccc
Confidence            32     347799999988764       357899999999999999999887654

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.66  E-value=4.9e-16  Score=128.78  Aligned_cols=119  Identities=14%  Similarity=0.113  Sum_probs=91.8

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChh------HHHHHHHHhccCccccccccCCCCC
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEG------SIEDCRTRYNGDADHHQRRKKFSFP  143 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~------~~~~a~~~~~~~~~~~~~~~~~~~~  143 (262)
                      +...++..+...++.+|||+|||+|.++..+++.  +..+|+|+|+|+.      +++.|++++...        +...+
T Consensus        31 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~--------~~~~~  102 (275)
T 3bkx_A           31 HRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG--------PLGDR  102 (275)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS--------TTGGG
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc--------CCCCc
Confidence            3445566666678899999999999999988764  3368999999997      999999987632        22346


Q ss_pred             eEEEeCc---ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          144 ARLICGD---CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       144 v~~~~~d---~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ++++++|   ...+++     ++++||+|++..+++|+    .+...+++.+.++++|||.+++...
T Consensus       103 v~~~~~d~~~~~~~~~-----~~~~fD~v~~~~~l~~~----~~~~~~~~~~~~l~~~gG~l~~~~~  160 (275)
T 3bkx_A          103 LTVHFNTNLSDDLGPI-----ADQHFDRVVLAHSLWYF----ASANALALLFKNMAAVCDHVDVAEW  160 (275)
T ss_dssp             EEEECSCCTTTCCGGG-----TTCCCSEEEEESCGGGS----SCHHHHHHHHHHHTTTCSEEEEEEE
T ss_pred             eEEEECChhhhccCCC-----CCCCEEEEEEccchhhC----CCHHHHHHHHHHHhCCCCEEEEEEe
Confidence            9999998   334444     57899999999999998    3344577777777788999998753

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.66  E-value=1.3e-15  Score=121.70  Aligned_cols=116  Identities=15%  Similarity=0.182  Sum_probs=89.5

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--ccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDK  158 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~  158 (262)
                      ..++.+|||+|||+|.++..+++. +...++|+|+|+.+++.|+++....        +. .++.++++|+.+++  +  
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~--------~~-~~v~~~~~d~~~~~~~~--  107 (214)
T 1yzh_A           39 GNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV--------GV-PNIKLLWVDGSDLTDYF--  107 (214)
T ss_dssp             TSCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH--------CC-SSEEEEECCSSCGGGTS--
T ss_pred             CCCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc--------CC-CCEEEEeCCHHHHHhhc--
Confidence            356789999999999999988774 3558999999999999999987632        11 46999999998765  3  


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHH----HHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEA----RARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~----~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                         ++++||+|++++...+......    ....++.++.++|+|||.+++.+.+...
T Consensus       108 ---~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  161 (214)
T 1yzh_A          108 ---EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGL  161 (214)
T ss_dssp             ---CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHH
T ss_pred             ---CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHH
Confidence               5678999999876543200000    1357999999999999999999876543

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.66  E-value=3.7e-16  Score=123.87  Aligned_cols=111  Identities=14%  Similarity=0.124  Sum_probs=86.5

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-CCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ++.+|||+|||+|.++..++......|+|+|+|+.|++.|++++...+        .. .+++++++|+.++...   .+
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--------~~~~~v~~~~~d~~~~~~~---~~  121 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLK--------CSSEQAEVINQSSLDFLKQ---PQ  121 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT--------CCTTTEEEECSCHHHHTTS---CC
T ss_pred             CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhC--------CCccceEEEECCHHHHHHh---hc
Confidence            678999999999999988766666689999999999999999886322        11 4699999998765320   02


Q ss_pred             CCC-eeEEEEcccccccCCCHHHHHHHHHHH--HhccCCCcEEEEEeCChH
Q 024797          163 DAP-FDICSCQFAMHYSWSTEARARRALANV--SALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       163 ~~~-fD~V~~~~~l~~~~~~~~~~~~~l~~~--~~~L~~gG~li~~~~~~~  210 (262)
                      +++ ||+|+++..++ .    .....++..+  .++|+|||.+++++....
T Consensus       122 ~~~~fD~I~~~~~~~-~----~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~  167 (201)
T 2ift_A          122 NQPHFDVVFLDPPFH-F----NLAEQAISLLCENNWLKPNALIYVETEKDK  167 (201)
T ss_dssp             SSCCEEEEEECCCSS-S----CHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred             cCCCCCEEEECCCCC-C----ccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence            568 99999988754 2    4567788888  678999999999876543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.66  E-value=4.5e-16  Score=125.24  Aligned_cols=109  Identities=20%  Similarity=0.160  Sum_probs=87.2

Q ss_pred             HHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797           79 QLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (262)
                      .+.++||.+|||+|||+|.++..+++  .+.++|+|+|+|++|++.++++...           ..++..+.+|......
T Consensus        72 ~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~-----------~~ni~~V~~d~~~p~~  140 (233)
T 4df3_A           72 ELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD-----------RRNIFPILGDARFPEK  140 (233)
T ss_dssp             CCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTT-----------CTTEEEEESCTTCGGG
T ss_pred             hcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHh-----------hcCeeEEEEeccCccc
Confidence            45578999999999999999999887  4678999999999999999988763           2468888888765432


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .  ....+.+|+|++....+      .+...++.++.+.|||||.+++.+
T Consensus       141 ~--~~~~~~vDvVf~d~~~~------~~~~~~l~~~~r~LKpGG~lvI~i  182 (233)
T 4df3_A          141 Y--RHLVEGVDGLYADVAQP------EQAAIVVRNARFFLRDGGYMLMAI  182 (233)
T ss_dssp             G--TTTCCCEEEEEECCCCT------THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c--ccccceEEEEEEeccCC------hhHHHHHHHHHHhccCCCEEEEEE
Confidence            1  11467899998754332      567889999999999999999875

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.66  E-value=6.3e-16  Score=132.63  Aligned_cols=121  Identities=17%  Similarity=0.211  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe
Q 024797           69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC  148 (262)
Q Consensus        69 ~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~  148 (262)
                      ...+.+.++..+...++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.|+++....        ++..++++++
T Consensus        35 ~~~y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~--------~l~~~v~~~~  105 (348)
T 2y1w_A           35 TGTYQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSN--------NLTDRIVVIP  105 (348)
T ss_dssp             HHHHHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHT--------TCTTTEEEEE
T ss_pred             HHHHHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHc--------CCCCcEEEEE
Confidence            3345556666666668899999999999999988777667899999996 889998887632        3345799999


Q ss_pred             CcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       149 ~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +|+.+++.      +++||+|++...++|+  ..+.....+.++.++|+|||.+++..
T Consensus       106 ~d~~~~~~------~~~~D~Ivs~~~~~~~--~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          106 GKVEEVSL------PEQVDIIISEPMGYML--FNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             SCTTTCCC------SSCEEEEEECCCBTTB--TTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             cchhhCCC------CCceeEEEEeCchhcC--ChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            99988764      3689999999887776  33445677888999999999998653

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.66  E-value=1e-16  Score=140.79  Aligned_cols=124  Identities=16%  Similarity=0.215  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC
Q 024797           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (262)
Q Consensus        70 ~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (262)
                      ..+...++..+...++.+|||+|||+|.++..+++... +|+|+|+|+.|++.|+++...           .....+...
T Consensus        93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~-----------~~~~~~~~~  160 (416)
T 4e2x_A           93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIR-----------VRTDFFEKA  160 (416)
T ss_dssp             HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCC-----------EECSCCSHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCC-----------cceeeechh
Confidence            33445555555556788999999999999998876544 899999999999999876210           000112234


Q ss_pred             cccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHH
Q 024797          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK  214 (262)
Q Consensus       150 d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~  214 (262)
                      +...+++     ++++||+|++.++++|+    +++..++++++++|+|||++++.+++...+..
T Consensus       161 ~~~~l~~-----~~~~fD~I~~~~vl~h~----~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~  216 (416)
T 4e2x_A          161 TADDVRR-----TEGPANVIYAANTLCHI----PYVQSVLEGVDALLAPDGVFVFEDPYLGDIVA  216 (416)
T ss_dssp             HHHHHHH-----HHCCEEEEEEESCGGGC----TTHHHHHHHHHHHEEEEEEEEEEEECHHHHHH
T ss_pred             hHhhccc-----CCCCEEEEEECChHHhc----CCHHHHHHHHHHHcCCCeEEEEEeCChHHhhh
Confidence            4444444     46899999999999999    57899999999999999999999998765443

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.65  E-value=4.5e-16  Score=133.60  Aligned_cols=117  Identities=21%  Similarity=0.175  Sum_probs=91.2

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      .+.++......++.+|||+|||+|.++..+++.+..+|+|+|+|+ |++.|+++....        +...+++++++|+.
T Consensus        55 ~~~i~~~~~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~--------~~~~~v~~~~~d~~  125 (349)
T 3q7e_A           55 RNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKAN--------KLDHVVTIIKGKVE  125 (349)
T ss_dssp             HHHHHTCHHHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHT--------TCTTTEEEEESCTT
T ss_pred             HHHHHhccccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHc--------CCCCcEEEEECcHH
Confidence            333433334467899999999999999988877667899999995 999999987632        33456999999999


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      ++++     ++++||+|++....+++ ........++.++.++|+|||.++.
T Consensus       126 ~~~~-----~~~~fD~Iis~~~~~~l-~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          126 EVEL-----PVEKVDIIISEWMGYCL-FYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             TCCC-----SSSCEEEEEECCCBBTB-TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             HccC-----CCCceEEEEEccccccc-cCchhHHHHHHHHHHhCCCCCEEcc
Confidence            9876     67899999997643332 1235578899999999999999874

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.65  E-value=6.4e-16  Score=119.72  Aligned_cols=110  Identities=15%  Similarity=0.049  Sum_probs=86.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-ccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~  161 (262)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...        +...++.++++|+.+. +.     
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~~~~~~~d~~~~~~~-----   96 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMT--------KAENRFTLLKMEAERAIDC-----   96 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTT--------TCGGGEEEECSCHHHHHHH-----
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCceEEEECcHHHhHHh-----
Confidence            467899999999999999887765568999999999999999988632        2234589999998773 22     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHH--hccCCCcEEEEEeCChH
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~--~~L~~gG~li~~~~~~~  210 (262)
                      .++.||+|+++..++.     .....++..+.  ++|+|||.+++.++...
T Consensus        97 ~~~~fD~i~~~~~~~~-----~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A           97 LTGRFDLVFLDPPYAK-----ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             BCSCEEEEEECCSSHH-----HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             hcCCCCEEEECCCCCc-----chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            2467999999876532     34566777776  99999999999887653

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.65  E-value=2.9e-16  Score=126.31  Aligned_cols=102  Identities=15%  Similarity=0.279  Sum_probs=86.8

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc--ccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE--VHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~  160 (262)
                      .++.+|||+|||+|.++..+++. ..+++|+|+|+.+++.++++.                ..+.++|+.+  .++    
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~----------------~~~~~~d~~~~~~~~----   89 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL----------------DHVVLGDIETMDMPY----   89 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS----------------SEEEESCTTTCCCCS----
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC----------------CcEEEcchhhcCCCC----
Confidence            57789999999999999988776 468999999999999998754                3578888876  333    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                       ++++||+|++..+++|+    .++..++.++.++|+|||.+++++++..
T Consensus        90 -~~~~fD~v~~~~~l~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~~~  134 (230)
T 3cc8_A           90 -EEEQFDCVIFGDVLEHL----FDPWAVIEKVKPYIKQNGVILASIPNVS  134 (230)
T ss_dssp             -CTTCEEEEEEESCGGGS----SCHHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred             -CCCccCEEEECChhhhc----CCHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence             56899999999999998    4567999999999999999999998754

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.64  E-value=9.2e-16  Score=131.86  Aligned_cols=129  Identities=12%  Similarity=0.092  Sum_probs=94.4

Q ss_pred             hHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCC-CCCeE
Q 024797           68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPAR  145 (262)
Q Consensus        68 ~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~  145 (262)
                      .....+..++..+...++.+|||+|||+|..+..++. .+..+++|||+|+.+++.|++...... .+....+. ..+++
T Consensus       157 t~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~fr-kr~~~~Gl~~~rVe  235 (438)
T 3uwp_A          157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFR-KWMKWYGKKHAEYT  235 (438)
T ss_dssp             THHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHH-HHHHHHTBCCCEEE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHH-HHHHHhCCCCCCeE
Confidence            3344566677777778999999999999999988875 355569999999999999987542100 00000111 24699


Q ss_pred             EEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          146 LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       146 ~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ++++|+.++++...   -..||+|+++..++ .    ++....|.++.++|||||+|++.
T Consensus       236 fi~GD~~~lp~~d~---~~~aDVVf~Nn~~F-~----pdl~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          236 LERGDFLSEEWRER---IANTSVIFVNNFAF-G----PEVDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             EEECCTTSHHHHHH---HHTCSEEEECCTTC-C----HHHHHHHHHHHTTSCTTCEEEES
T ss_pred             EEECcccCCccccc---cCCccEEEEccccc-C----chHHHHHHHHHHcCCCCcEEEEe
Confidence            99999998876211   14799999987653 2    67788889999999999999975

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.64  E-value=6.6e-16  Score=133.83  Aligned_cols=121  Identities=15%  Similarity=0.226  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe
Q 024797           69 LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC  148 (262)
Q Consensus        69 ~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~  148 (262)
                      ...|...++......++.+|||+|||+|.++..+++.+..+|+|+|+| .|++.|+++....        +...++++++
T Consensus        48 ~~~~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~--------~~~~~v~~~~  118 (376)
T 3r0q_C           48 MDAYFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKAN--------NLDHIVEVIE  118 (376)
T ss_dssp             HHHHHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHT--------TCTTTEEEEE
T ss_pred             HHHHHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHc--------CCCCeEEEEE
Confidence            334444454444556789999999999999998887766689999999 9999999987632        3345699999


Q ss_pred             CcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       149 ~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      +|+.++++     + ++||+|++....+++ .....+..++.++.++|+|||.+++.
T Consensus       119 ~d~~~~~~-----~-~~~D~Iv~~~~~~~l-~~e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          119 GSVEDISL-----P-EKVDVIISEWMGYFL-LRESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             SCGGGCCC-----S-SCEEEEEECCCBTTB-TTTCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             CchhhcCc-----C-CcceEEEEcChhhcc-cchHHHHHHHHHHHhhCCCCeEEEEe
Confidence            99998875     3 889999996644433 33345788999999999999999764

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.64  E-value=9e-16  Score=126.88  Aligned_cols=116  Identities=19%  Similarity=0.205  Sum_probs=84.8

Q ss_pred             CCCeEEEecCCCCc----chHHHHhc-C----CCeEEEEeCChhHHHHHHHHhccCcc----c------cc---c-----
Q 024797           84 RGDVVLDLACGKGG----DLIKWDKA-K----IGYYVGIDIAEGSIEDCRTRYNGDAD----H------HQ---R-----  136 (262)
Q Consensus        84 ~~~~vLDiGcG~G~----~~~~l~~~-~----~~~v~gvD~s~~~~~~a~~~~~~~~~----~------~~---~-----  136 (262)
                      ++.+|||+|||+|.    ++..+++. +    ..+|+|+|+|+.|++.|++..-....    .      ..   .     
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    33334332 2    23799999999999999987521000    0      00   0     


Q ss_pred             ----ccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          137 ----RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       137 ----~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                          ...+..+|.|.++|+.+.++.    ..++||+|+|.++++|+  +.+...+++.+++++|+|||+|++.
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~----~~~~fDlI~crnvliyf--~~~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYN----VPGPFDAIFCRNVMIYF--DKTTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCC----CCCCEEEEEECSSGGGS--CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeechhhcccCeEEecccCCCCCC----cCCCeeEEEECCchHhC--CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence                000113699999999875441    25789999999999998  7778899999999999999999984

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.64  E-value=2.7e-15  Score=121.12  Aligned_cols=116  Identities=18%  Similarity=0.174  Sum_probs=88.2

Q ss_pred             HhccCCCeEEEecCC-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           80 LYARRGDVVLDLACG-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ....++.+|||+||| +|.++..+++....+|+|+|+|+.+++.|++++...          +.+++++++|+..+..  
T Consensus        51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~----------~~~v~~~~~d~~~~~~--  118 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERN----------NSNVRLVKSNGGIIKG--  118 (230)
T ss_dssp             TTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHT----------TCCCEEEECSSCSSTT--
T ss_pred             hhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHh----------CCCcEEEeCCchhhhh--
Confidence            345688999999999 999999887653568999999999999999987632          2268999999754321  


Q ss_pred             ccCCCCCeeEEEEcccccccCC---------------CHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          159 VLADDAPFDICSCQFAMHYSWS---------------TEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~---------------~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                        .++++||+|+++..+++...               .......+++++.++|+|||.+++.++..
T Consensus       119 --~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  182 (230)
T 3evz_A          119 --VVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK  182 (230)
T ss_dssp             --TCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC
T ss_pred             --cccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence              14588999999866554310               11234789999999999999999987754

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.63  E-value=4.3e-15  Score=116.01  Aligned_cols=116  Identities=21%  Similarity=0.230  Sum_probs=91.4

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ++..+...++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.+++++...        +...++.+.++|+.+ .
T Consensus        25 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~--------~~~~~~~~~~~d~~~-~   94 (192)
T 1l3i_A           25 IMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRH--------GLGDNVTLMEGDAPE-A   94 (192)
T ss_dssp             HHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHT--------TCCTTEEEEESCHHH-H
T ss_pred             HHHhcCCCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHc--------CCCcceEEEecCHHH-h
Confidence            3444456788899999999999998887655 78999999999999999987632        222468999999876 2


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      +.    ..+.||+|++..++++       ...+++++.++|+|||.+++..++....
T Consensus        95 ~~----~~~~~D~v~~~~~~~~-------~~~~l~~~~~~l~~gG~l~~~~~~~~~~  140 (192)
T 1l3i_A           95 LC----KIPDIDIAVVGGSGGE-------LQEILRIIKDKLKPGGRIIVTAILLETK  140 (192)
T ss_dssp             HT----TSCCEEEEEESCCTTC-------HHHHHHHHHHTEEEEEEEEEEECBHHHH
T ss_pred             cc----cCCCCCEEEECCchHH-------HHHHHHHHHHhcCCCcEEEEEecCcchH
Confidence            31    2268999999887754       3778999999999999999998876543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.63  E-value=1.9e-15  Score=128.63  Aligned_cols=119  Identities=21%  Similarity=0.245  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC
Q 024797           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (262)
Q Consensus        70 ~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (262)
                      ..|.+.++......++.+|||+|||+|.++..+++.+..+|+|+|+| .|++.|+++....        +...+++++++
T Consensus        24 ~~y~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~--------~~~~~i~~~~~   94 (328)
T 1g6q_1           24 LSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELN--------GFSDKITLLRG   94 (328)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHT--------TCTTTEEEEES
T ss_pred             HHHHHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHc--------CCCCCEEEEEC
Confidence            34444454455556788999999999999988877666689999999 5999999887632        33456999999


Q ss_pred             cccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       150 d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                      |+.++++     ++++||+|++....+++ .....+..++.++.++|+|||.++
T Consensus        95 d~~~~~~-----~~~~~D~Ivs~~~~~~l-~~~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1           95 KLEDVHL-----PFPKVDIIISEWMGYFL-LYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             CTTTSCC-----SSSCEEEEEECCCBTTB-STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             chhhccC-----CCCcccEEEEeCchhhc-ccHHHHHHHHHHHHhhcCCCeEEE
Confidence            9988775     56889999987543332 123456789999999999999987

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.63  E-value=1.3e-15  Score=120.87  Aligned_cols=103  Identities=16%  Similarity=0.101  Sum_probs=85.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..+++.+..+++|+|+|+.+++.|+++....+.         .++.+.++|+.+.       
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~---------~~v~~~~~d~~~~-------  121 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGI---------YDIALQKTSLLAD-------  121 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---------CCCEEEESSTTTT-------
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC---------CceEEEecccccc-------
Confidence            457889999999999999988776666899999999999999998763221         2389999998764       


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .+++||+|+++..+++       ...+++++.++|+|||.+++...
T Consensus       122 ~~~~fD~i~~~~~~~~-------~~~~l~~~~~~L~~gG~l~~~~~  160 (205)
T 3grz_A          122 VDGKFDLIVANILAEI-------LLDLIPQLDSHLNEDGQVIFSGI  160 (205)
T ss_dssp             CCSCEEEEEEESCHHH-------HHHHGGGSGGGEEEEEEEEEEEE
T ss_pred             CCCCceEEEECCcHHH-------HHHHHHHHHHhcCCCCEEEEEec
Confidence            3578999999876653       47889999999999999998743

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.63  E-value=2.8e-15  Score=121.63  Aligned_cols=123  Identities=15%  Similarity=0.115  Sum_probs=86.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc-cc--cc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VH--LD  157 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~--~~  157 (262)
                      ..++.+|||||||+|.++..+++. +...|+|+|+|+.|++.|++++......   ......++.++++|+.. ++  + 
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~---~~~~~~nv~~~~~d~~~~l~~~~-  119 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAA---PAGGFQNIACLRSNAMKHLPNFF-  119 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHS---TTCCCTTEEEEECCTTTCHHHHC-
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHH---HhcCCCeEEEEECcHHHhhhhhC-
Confidence            356779999999999999998764 4557999999999999998775421000   00113469999999976 44  3 


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHH----HHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEAR----ARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~----~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                          ++++||.|++.+...+.......    ...+++++.++|+|||.|++.+.+....
T Consensus       120 ----~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~~~~~  174 (235)
T 3ckk_A          120 ----YKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELH  174 (235)
T ss_dssp             ----CTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEESCHHHH
T ss_pred             ----CCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCCHHHH
Confidence                57899999876544332000000    1479999999999999999998876543

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.63  E-value=1.6e-15  Score=120.19  Aligned_cols=107  Identities=9%  Similarity=-0.008  Sum_probs=83.9

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-ccccccCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~  162 (262)
                      ++.+|||+|||+|.++..++.....+|+|+|+|+.|++.|++++...+        . .+++++++|+.+. +.     .
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~--------~-~~v~~~~~D~~~~~~~-----~  119 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLK--------A-GNARVVNSNAMSFLAQ-----K  119 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT--------C-CSEEEECSCHHHHHSS-----C
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcC--------C-CcEEEEECCHHHHHhh-----c
Confidence            678999999999999988766665689999999999999999886321        1 4699999998763 32     4


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHh--ccCCCcEEEEEeCCh
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPDA  209 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~--~L~~gG~li~~~~~~  209 (262)
                      .++||+|++...++ .    .....+++.+.+  +|+|||.+++++...
T Consensus       120 ~~~fD~V~~~~p~~-~----~~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          120 GTPHNIVFVDPPFR-R----GLLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             CCCEEEEEECCSSS-T----TTHHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             CCCCCEEEECCCCC-C----CcHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            57899999987744 2    334567777755  599999999987654

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.63  E-value=6.1e-15  Score=127.22  Aligned_cols=109  Identities=13%  Similarity=0.031  Sum_probs=90.8

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc--ccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV--HLD  157 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~--~~~  157 (262)
                      ......+|||||||+|.++..+++. +..+++++|+ +.+++.|++++...        +...+++++.+|+.+.  ++ 
T Consensus       176 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~~~-  245 (363)
T 3dp7_A          176 FSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGL--------SGSERIHGHGANLLDRDVPF-  245 (363)
T ss_dssp             GGGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTC--------TTGGGEEEEECCCCSSSCCC-
T ss_pred             cccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhc--------CcccceEEEEccccccCCCC-
Confidence            3356789999999999999988764 4558999999 99999999987632        2235699999999875  34 


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                          + +.||+|++..++|++  +.++...++++++++|+|||.+++..
T Consensus       246 ----p-~~~D~v~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          246 ----P-TGFDAVWMSQFLDCF--SEEEVISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             ----C-CCCSEEEEESCSTTS--CHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             ----C-CCcCEEEEechhhhC--CHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence                3 689999999999988  67778899999999999999998864

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.62  E-value=2.1e-15  Score=120.26  Aligned_cols=107  Identities=13%  Similarity=0.057  Sum_probs=78.5

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+|||+|..+..+++. +.+.|+|+|+|+.|++.+.+....           ..++.++++|+........ 
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~-----------~~~v~~~~~d~~~~~~~~~-  122 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-----------RNNIIPLLFDASKPWKYSG-  122 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-----------CSSEEEECSCTTCGGGTTT-
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc-----------CCCeEEEEcCCCCchhhcc-
Confidence            467889999999999988887763 346899999999988766554432           1258888899876411000 


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                       ..++||+|+++.. +     ......++++++++|||||.+++.++
T Consensus       123 -~~~~fD~V~~~~~-~-----~~~~~~~l~~~~r~LkpgG~l~i~~~  162 (210)
T 1nt2_A          123 -IVEKVDLIYQDIA-Q-----KNQIEILKANAEFFLKEKGEVVIMVK  162 (210)
T ss_dssp             -TCCCEEEEEECCC-S-----TTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -cccceeEEEEecc-C-----hhHHHHHHHHHHHHhCCCCEEEEEEe
Confidence             2378999998732 1     13455679999999999999999863

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.62  E-value=1.2e-15  Score=119.03  Aligned_cols=114  Identities=14%  Similarity=0.089  Sum_probs=85.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...        +...+++++++|+.+.... ...+
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~~~~~~~d~~~~~~~-~~~~  113 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAIT--------KEPEKFEVRKMDANRALEQ-FYEE  113 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH--------TCGGGEEEEESCHHHHHHH-HHHT
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh--------CCCcceEEEECcHHHHHHH-HHhc
Confidence            467899999999999999887766668999999999999999987632        2234689999998764210 0002


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHH--HhccCCCcEEEEEeCChH
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANV--SALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~--~~~L~~gG~li~~~~~~~  210 (262)
                      +++||+|+++..++..  .   ....+..+  .++|+|||.+++.++...
T Consensus       114 ~~~fD~i~~~~~~~~~--~---~~~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          114 KLQFDLVLLDPPYAKQ--E---IVSQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             TCCEEEEEECCCGGGC--C---HHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CCCCCEEEECCCCCch--h---HHHHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            5789999998775422  2   34455555  889999999999887653

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.62  E-value=4.8e-15  Score=119.68  Aligned_cols=110  Identities=18%  Similarity=0.128  Sum_probs=88.9

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ...++..+...++.+|||+|||+|.++..++... .+|+|+|+|+.+++.++++....          . ++.++++|+.
T Consensus        59 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~----------~-~v~~~~~d~~  126 (231)
T 1vbf_A           59 GIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYY----------N-NIKLILGDGT  126 (231)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTC----------S-SEEEEESCGG
T ss_pred             HHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhc----------C-CeEEEECCcc
Confidence            3445555556788899999999999999887655 68999999999999999987631          2 6899999987


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ....     .+++||+|++..+++|+  .        .++.++|+|||.+++.+++.
T Consensus       127 ~~~~-----~~~~fD~v~~~~~~~~~--~--------~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          127 LGYE-----EEKPYDRVVVWATAPTL--L--------CKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             GCCG-----GGCCEEEEEESSBBSSC--C--------HHHHHTEEEEEEEEEEECSS
T ss_pred             cccc-----cCCCccEEEECCcHHHH--H--------HHHHHHcCCCcEEEEEEcCC
Confidence            6321     35789999999999987  2        35889999999999988754

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.62  E-value=8.5e-16  Score=118.58  Aligned_cols=102  Identities=12%  Similarity=0.061  Sum_probs=81.6

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|.++..++.. +..+|+++|+|+.|++.+++++...+.        ..++.+  +|.....      
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~--------~~~v~~--~d~~~~~------  111 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKT--------TIKYRF--LNKESDV------  111 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCC--------SSEEEE--ECCHHHH------
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCC--------CccEEE--ecccccC------
Confidence            56789999999999998888653 344899999999999999999874332        223444  5554432      


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      +.++||+|++..++|++    ++.+..+.++.+.|+|||.+|-
T Consensus       112 ~~~~~DvVLa~k~LHlL----~~~~~al~~v~~~L~pggvfIS  150 (200)
T 3fzg_A          112 YKGTYDVVFLLKMLPVL----KQQDVNILDFLQLFHTQNFVIS  150 (200)
T ss_dssp             TTSEEEEEEEETCHHHH----HHTTCCHHHHHHTCEEEEEEEE
T ss_pred             CCCCcChhhHhhHHHhh----hhhHHHHHHHHHHhCCCCEEEE
Confidence            57889999999999998    7788888899999999997664

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.62  E-value=6.7e-15  Score=114.11  Aligned_cols=111  Identities=18%  Similarity=0.250  Sum_probs=88.9

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ++..+...++.+|||+|||+|.++..++. ...+++|+|+|+.+++.++++....+         ..++.++++|+.+ +
T Consensus        27 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~---------~~~~~~~~~d~~~-~   95 (183)
T 2yxd_A           27 SIGKLNLNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFN---------IKNCQIIKGRAED-V   95 (183)
T ss_dssp             HHHHHCCCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTT---------CCSEEEEESCHHH-H
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcC---------CCcEEEEECCccc-c
Confidence            44444556788999999999999998877 66689999999999999999876322         1358999999877 4


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      +     ++++||+|++..+ +       +...+++++.++  |||.+++..++.+.+
T Consensus        96 ~-----~~~~~D~i~~~~~-~-------~~~~~l~~~~~~--~gG~l~~~~~~~~~~  137 (183)
T 2yxd_A           96 L-----DKLEFNKAFIGGT-K-------NIEKIIEILDKK--KINHIVANTIVLENA  137 (183)
T ss_dssp             G-----GGCCCSEEEECSC-S-------CHHHHHHHHHHT--TCCEEEEEESCHHHH
T ss_pred             c-----cCCCCcEEEECCc-c-------cHHHHHHHHhhC--CCCEEEEEecccccH
Confidence            4     4578999999887 2       246788888888  999999999887654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.62  E-value=7.3e-15  Score=127.16  Aligned_cols=111  Identities=24%  Similarity=0.293  Sum_probs=91.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..+++.. .+|+|+|+|+.+++.|++++...          ...++++++|+.+...     +
T Consensus       232 ~~~~~VLDlGcG~G~~~~~la~~g-~~V~gvDis~~al~~A~~n~~~~----------~~~v~~~~~D~~~~~~-----~  295 (381)
T 3dmg_A          232 VRGRQVLDLGAGYGALTLPLARMG-AEVVGVEDDLASVLSLQKGLEAN----------ALKAQALHSDVDEALT-----E  295 (381)
T ss_dssp             TTTCEEEEETCTTSTTHHHHHHTT-CEEEEEESBHHHHHHHHHHHHHT----------TCCCEEEECSTTTTSC-----T
T ss_pred             CCCCEEEEEeeeCCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHc----------CCCeEEEEcchhhccc-----c
Confidence            367899999999999999988764 48999999999999999987632          2248899999988764     4


Q ss_pred             CCCeeEEEEcccccccC-CCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          163 DAPFDICSCQFAMHYSW-STEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~-~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      +++||+|+++..+++.. ........++.++.++|+|||.+++.+...
T Consensus       296 ~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~  343 (381)
T 3dmg_A          296 EARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPF  343 (381)
T ss_dssp             TCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred             CCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence            58999999998888621 023778899999999999999999987543

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.62  E-value=3.5e-15  Score=122.78  Aligned_cols=114  Identities=16%  Similarity=0.157  Sum_probs=87.6

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ++.+|||+|||+|.++..++......|+|+|+++.+++.|++++..        .++..++.++++|+.++...   .+.
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~--------~~~~~~v~~~~~D~~~~~~~---~~~  117 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAY--------NQLEDQIEIIEYDLKKITDL---IPK  117 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHH--------TTCTTTEEEECSCGGGGGGT---SCT
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH--------CCCcccEEEEECcHHHhhhh---hcc
Confidence            6889999999999999988776555899999999999999998873        23345699999999876521   146


Q ss_pred             CCeeEEEEccccccc----C------------CCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          164 APFDICSCQFAMHYS----W------------STEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~----~------------~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ++||+|+++..+...    .            ........++..+.++|+|||.+++..+.
T Consensus       118 ~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  178 (259)
T 3lpm_A          118 ERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP  178 (259)
T ss_dssp             TCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred             CCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence            899999997544221    0            01245678999999999999999987753

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.62  E-value=6.6e-15  Score=125.48  Aligned_cols=116  Identities=17%  Similarity=0.122  Sum_probs=93.4

Q ss_pred             HHHHHHhc--cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           75 SVLVQLYA--RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        75 ~~l~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      .++..+..  .++.+|||+|||+|..+..+++. +..+++++|+| .+++.|+++....        +...++++.++|+
T Consensus       154 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~--------~~~~~v~~~~~d~  224 (335)
T 2r3s_A          154 LIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ--------GVASRYHTIAGSA  224 (335)
T ss_dssp             HHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHH--------TCGGGEEEEESCT
T ss_pred             HHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhc--------CCCcceEEEeccc
Confidence            34444444  67789999999999999888764 34589999999 9999999987532        2234699999999


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .+.++     + ..||+|++.++++|+  +.++...+++++.++|+|||++++..+
T Consensus       225 ~~~~~-----~-~~~D~v~~~~~l~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~  272 (335)
T 2r3s_A          225 FEVDY-----G-NDYDLVLLPNFLHHF--DVATCEQLLRKIKTALAVEGKVIVFDF  272 (335)
T ss_dssp             TTSCC-----C-SCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCCC-----C-CCCcEEEEcchhccC--CHHHHHHHHHHHHHhCCCCcEEEEEee
Confidence            87654     3 349999999999998  777789999999999999999887653

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.61  E-value=5.2e-15  Score=122.24  Aligned_cols=100  Identities=20%  Similarity=0.370  Sum_probs=84.1

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|.++..+++. +...|+|+|+|+.+++.|+++..              ++.+.++|+.++++     
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~-----  144 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP--------------QVTFCVASSHRLPF-----  144 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT--------------TSEEEECCTTSCSB-----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCC--------------CcEEEEcchhhCCC-----
Confidence            57889999999999999988775 34589999999999999998753              37899999988776     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      ++++||+|++.++..           ++.++.++|+|||.+++.+++...+
T Consensus       145 ~~~~fD~v~~~~~~~-----------~l~~~~~~L~pgG~l~~~~~~~~~~  184 (269)
T 1p91_A          145 SDTSMDAIIRIYAPC-----------KAEELARVVKPGGWVITATPGPRHL  184 (269)
T ss_dssp             CTTCEEEEEEESCCC-----------CHHHHHHHEEEEEEEEEEEECTTTT
T ss_pred             CCCceeEEEEeCChh-----------hHHHHHHhcCCCcEEEEEEcCHHHH
Confidence            678999999876543           4688999999999999999876543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.61  E-value=1e-16  Score=130.46  Aligned_cols=104  Identities=22%  Similarity=0.247  Sum_probs=85.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..++... ..|+|+|+|+.|++.|++++...+        ...++.++++|+.+++      +
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~--------~~~~~~~~~~d~~~~~------~  141 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYG--------IADKIEFICGDFLLLA------S  141 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTT--------CGGGEEEEESCHHHHG------G
T ss_pred             cCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcC--------CCcCeEEEECChHHhc------c
Confidence            378899999999999999988754 689999999999999999886432        2246999999998875      3


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      +++||+|+++..+++.    .+....+.++.++|+|||.+++.
T Consensus       142 ~~~~D~v~~~~~~~~~----~~~~~~~~~~~~~L~pgG~~i~~  180 (241)
T 3gdh_A          142 FLKADVVFLSPPWGGP----DYATAETFDIRTMMSPDGFEIFR  180 (241)
T ss_dssp             GCCCSEEEECCCCSSG----GGGGSSSBCTTTSCSSCHHHHHH
T ss_pred             cCCCCEEEECCCcCCc----chhhhHHHHHHhhcCCcceeHHH
Confidence            5789999999988876    44445777899999999997653

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.61  E-value=2.2e-15  Score=122.59  Aligned_cols=105  Identities=12%  Similarity=0.040  Sum_probs=82.9

Q ss_pred             cCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|..+..++. .+..+|+|+|+|+.|++.|+++....+         ..+++++++|+.+++...  .
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~v~~~~~d~~~~~~~~--~  137 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQ---------LENTTFCHDRAETFGQRK--D  137 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHT---------CSSEEEEESCHHHHTTCT--T
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCEEEEeccHHHhcccc--c
Confidence            4678999999999999888875 345689999999999999999876321         125999999998765310  0


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .+++||+|++..+        .+...+++.+.++|+|||.+++..
T Consensus       138 ~~~~fD~V~~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~  174 (240)
T 1xdz_A          138 VRESYDIVTARAV--------ARLSVLSELCLPLVKKNGLFVALK  174 (240)
T ss_dssp             TTTCEEEEEEECC--------SCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ccCCccEEEEecc--------CCHHHHHHHHHHhcCCCCEEEEEe
Confidence            1578999998762        236789999999999999998865

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.60  E-value=7.8e-15  Score=125.94  Aligned_cols=116  Identities=17%  Similarity=0.210  Sum_probs=93.0

Q ss_pred             HHHHHhccC-CCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           76 VLVQLYARR-GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        76 ~l~~~~~~~-~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      ++..+...+ +.+|||+|||+|.++..+++. +..+++++|+ +.+++.++++....        +...+++++.+|+.+
T Consensus       170 ~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~  240 (352)
T 3mcz_A          170 VVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAH--------DLGGRVEFFEKNLLD  240 (352)
T ss_dssp             HHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT--------TCGGGEEEEECCTTC
T ss_pred             HHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhc--------CCCCceEEEeCCccc
Confidence            444444445 789999999999999988774 4558999999 88999999887632        233469999999987


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .+..    .++.||+|++..++||+  +.++...++++++++|+|||++++..
T Consensus       241 ~~~~----~~~~~D~v~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          241 ARNF----EGGAADVVMLNDCLHYF--DAREAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             GGGG----TTCCEEEEEEESCGGGS--CHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             Cccc----CCCCccEEEEecccccC--CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            6510    24569999999999998  77778999999999999999998864

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.60  E-value=6.4e-15  Score=117.62  Aligned_cols=112  Identities=18%  Similarity=0.069  Sum_probs=87.8

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      ..++..+...++.+|||+|||+|.++..+++..  ..+|+++|+|+.+++.+++++...+         ..++.+.++|+
T Consensus        67 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~---------~~~v~~~~~d~  137 (215)
T 2yxe_A           67 GMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLG---------YDNVIVIVGDG  137 (215)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHT---------CTTEEEEESCG
T ss_pred             HHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCeEEEECCc
Confidence            344555556788899999999999998887643  2689999999999999999876321         13488999998


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      .....     ..++||+|++..+++|+  .        .++.++|+|||.+++.+++.
T Consensus       138 ~~~~~-----~~~~fD~v~~~~~~~~~--~--------~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          138 TLGYE-----PLAPYDRIYTTAAGPKI--P--------EPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             GGCCG-----GGCCEEEEEESSBBSSC--C--------HHHHHTEEEEEEEEEEESSS
T ss_pred             ccCCC-----CCCCeeEEEECCchHHH--H--------HHHHHHcCCCcEEEEEECCC
Confidence            54221     25789999999999987  2        37899999999999988765

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.59  E-value=3.2e-14  Score=112.85  Aligned_cols=101  Identities=14%  Similarity=0.079  Sum_probs=82.0

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ++.+|||+|||+|..+..++.. +..+++|+|+|+.+++.++++....+         ..++.+.++|+.+.+      +
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---------~~~v~~~~~d~~~~~------~  129 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELK---------LENIEPVQSRVEEFP------S  129 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTT---------CSSEEEEECCTTTSC------C
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCeEEEecchhhCC------c
Confidence            4789999999999999988764 45689999999999999999876322         123899999998764      3


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .++||+|++... +       +...++..+.++|+|||.+++...
T Consensus       130 ~~~~D~i~~~~~-~-------~~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          130 EPPFDGVISRAF-A-------SLNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             CSCEEEEECSCS-S-------SHHHHHHHHTTSEEEEEEEEEEES
T ss_pred             cCCcCEEEEecc-C-------CHHHHHHHHHHhcCCCcEEEEEeC
Confidence            578999997542 2       256899999999999999998764

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.59  E-value=9.2e-15  Score=126.50  Aligned_cols=114  Identities=19%  Similarity=0.202  Sum_probs=90.9

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ++..+...++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|+++....        +...+++++++|+.+ 
T Consensus       174 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~-  243 (374)
T 1qzz_A          174 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA--------GLADRVTVAEGDFFK-  243 (374)
T ss_dssp             HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--------TCTTTEEEEECCTTS-
T ss_pred             HHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhc--------CCCCceEEEeCCCCC-
Confidence            343334456789999999999999988764 3458999999 99999999987632        234469999999875 


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ++     + ..||+|++.+++||+  +.+....+++++.++|+|||++++...
T Consensus       244 ~~-----~-~~~D~v~~~~vl~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          244 PL-----P-VTADVVLLSFVLLNW--SDEDALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             CC-----S-CCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cC-----C-CCCCEEEEeccccCC--CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence            33     2 249999999999988  666667999999999999999887654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.59  E-value=2.2e-14  Score=124.04  Aligned_cols=107  Identities=14%  Similarity=0.181  Sum_probs=89.1

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...        +...++++..+|+. .++    
T Consensus       200 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--------~l~~~v~~~~~d~~-~~~----  265 (369)
T 3gwz_A          200 FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGR--------GLADRCEILPGDFF-ETI----  265 (369)
T ss_dssp             CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--------TCTTTEEEEECCTT-TCC----
T ss_pred             CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhc--------CcCCceEEeccCCC-CCC----
Confidence            356789999999999999988774 4458999999 99999999987632        33457999999987 343    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                       +. .||+|++.+++|++  +.+...+++++++++|+|||++++..
T Consensus       266 -p~-~~D~v~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          266 -PD-GADVYLIKHVLHDW--DDDDVVRILRRIATAMKPDSRLLVID  307 (369)
T ss_dssp             -CS-SCSEEEEESCGGGS--CHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             -CC-CceEEEhhhhhccC--CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence             33 89999999999988  66677799999999999999998864

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.59  E-value=4.8e-15  Score=128.18  Aligned_cols=124  Identities=13%  Similarity=0.155  Sum_probs=91.4

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +.++..+...++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++...+...      ..++.+.++|+.
T Consensus       212 ~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~------~~~v~~~~~D~~  285 (375)
T 4dcm_A          212 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEA------LDRCEFMINNAL  285 (375)
T ss_dssp             HHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGG------GGGEEEEECSTT
T ss_pred             HHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCc------CceEEEEechhh
Confidence            334555555566899999999999999988753 5689999999999999999886432211      124888999987


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCC-CHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      +. +     ++++||+|+++..+++... .......+++++.++|+|||.+++.....
T Consensus       286 ~~-~-----~~~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~  337 (375)
T 4dcm_A          286 SG-V-----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRH  337 (375)
T ss_dssp             TT-C-----CTTCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred             cc-C-----CCCCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEECC
Confidence            73 3     5689999999988875310 11234578999999999999999977543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.59  E-value=7.3e-15  Score=125.19  Aligned_cols=106  Identities=18%  Similarity=0.149  Sum_probs=88.5

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      +..+|||+|||+|..+..+++. +..+++++|+ +.+++.|++++...        +...++++..+|+. .++     +
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~-~~~-----p  233 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDT--------GLSGRAQVVVGSFF-DPL-----P  233 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--------TCTTTEEEEECCTT-SCC-----C
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhc--------CcCcCeEEecCCCC-CCC-----C
Confidence            4679999999999999888764 4557999999 99999999987632        23457999999987 343     3


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      . .||+|++.+++||+  +.++..+++++++++|+|||++++...
T Consensus       234 ~-~~D~v~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~  275 (332)
T 3i53_A          234 A-GAGGYVLSAVLHDW--DDLSAVAILRRCAEAAGSGGVVLVIEA  275 (332)
T ss_dssp             C-SCSEEEEESCGGGS--CHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             C-CCcEEEEehhhccC--CHHHHHHHHHHHHHhcCCCCEEEEEee
Confidence            3 89999999999998  666789999999999999999988653

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.59  E-value=4.1e-15  Score=132.38  Aligned_cols=116  Identities=17%  Similarity=0.202  Sum_probs=90.9

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ...++..+...++.+|||+|||+|.++..+++.+..+|+|+|+|+ +++.|++++...        ++..+++++++|+.
T Consensus       147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~--------gl~~~v~~~~~d~~  217 (480)
T 3b3j_A          147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSN--------NLTDRIVVIPGKVE  217 (480)
T ss_dssp             HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHT--------TCTTTEEEEESCTT
T ss_pred             HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHc--------CCCCcEEEEECchh
Confidence            444555554557889999999999999888776666899999998 999999887632        33457999999998


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ++++      +++||+|++...++|.  ..+.....+.++.++|+|||.+++.
T Consensus       218 ~~~~------~~~fD~Ivs~~~~~~~--~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          218 EVSL------PEQVDIIISEPMGYML--FNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             TCCC------SSCEEEEECCCCHHHH--TCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             hCcc------CCCeEEEEEeCchHhc--CcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            8764      3689999998776655  3345666778899999999999854

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.59  E-value=1.3e-15  Score=122.81  Aligned_cols=107  Identities=17%  Similarity=0.268  Sum_probs=82.8

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc-ccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~  160 (262)
                      ..++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.++++..              +++++++|+ ..+++    
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~--------------~~~~~~~d~~~~~~~----  106 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARANAP--------------HADVYEWNGKGELPA----  106 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHCT--------------TSEEEECCSCSSCCT----
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhCC--------------CceEEEcchhhccCC----
Confidence            367889999999999999888766 4489999999999999998733              489999999 45554    


Q ss_pred             CC-CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC--ChHHHHHHHhh
Q 024797          161 AD-DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP--DANVIIKKLRE  218 (262)
Q Consensus       161 ~~-~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~--~~~~~~~~~~~  218 (262)
                       + +++||+|++..          ++..+++++.++|+|||.++....  +...+...+..
T Consensus       107 -~~~~~fD~v~~~~----------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~l~~  156 (226)
T 3m33_A          107 -GLGAPFGLIVSRR----------GPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERLAA  156 (226)
T ss_dssp             -TCCCCEEEEEEES----------CCSGGGGGHHHHEEEEEEEEEEESSSCCTHHHHHHHH
T ss_pred             -cCCCCEEEEEeCC----------CHHHHHHHHHHHcCCCcEEEEeCCcCCHHHHHHHHHH
Confidence             5 78999999872          235678899999999999983321  33444444443

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.58  E-value=2.5e-14  Score=123.14  Aligned_cols=113  Identities=14%  Similarity=0.049  Sum_probs=91.5

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ++..+...++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...        +...+++++++|+.+.
T Consensus       182 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~  252 (359)
T 1x19_A          182 LLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK--------GVADRMRGIAVDIYKE  252 (359)
T ss_dssp             HHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT--------TCTTTEEEEECCTTTS
T ss_pred             HHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhc--------CCCCCEEEEeCccccC
Confidence            444444457789999999999999988774 3458999999 99999999987632        2344699999999877


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ++     ++  +|+|++..++|++  +.++...+++++.++|+|||.+++..
T Consensus       253 ~~-----~~--~D~v~~~~vlh~~--~d~~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          253 SY-----PE--ADAVLFCRILYSA--NEQLSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             CC-----CC--CSEEEEESCGGGS--CHHHHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             CC-----CC--CCEEEEechhccC--CHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            54     32  3999999999988  66678999999999999999997764

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.58  E-value=1.9e-14  Score=117.74  Aligned_cols=106  Identities=13%  Similarity=0.010  Sum_probs=83.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.|+++....+.         .+++++++|+.+++....  
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l---------~~v~~~~~d~~~~~~~~~--  147 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL---------KGARALWGRAEVLAREAG--  147 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC---------SSEEEEECCHHHHTTSTT--
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC---------CceEEEECcHHHhhcccc--
Confidence            35789999999999998888764 566899999999999999998764322         249999999987753100  


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ..++||+|++..+.        +...++..+.++|+|||++++...
T Consensus       148 ~~~~fD~I~s~a~~--------~~~~ll~~~~~~LkpgG~l~~~~g  185 (249)
T 3g89_A          148 HREAYARAVARAVA--------PLCVLSELLLPFLEVGGAAVAMKG  185 (249)
T ss_dssp             TTTCEEEEEEESSC--------CHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             cCCCceEEEECCcC--------CHHHHHHHHHHHcCCCeEEEEEeC
Confidence            24789999986542        246789999999999999887653

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.58  E-value=1.5e-14  Score=116.07  Aligned_cols=123  Identities=13%  Similarity=0.087  Sum_probs=90.1

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-ccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKV  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~  159 (262)
                      .++.+|||+|||+|..+..+++.  ...+|+++|+++.+++.|++++...        +...+++++++|+.+. +....
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~l~~~~~  128 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA--------GLQDKVTILNGASQDLIPQLKK  128 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH--------TCGGGEEEEESCHHHHGGGTTT
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHc--------CCCCceEEEECCHHHHHHHHHH
Confidence            46789999999999999988763  3568999999999999999987632        2334699999998653 22100


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC---ChHHHHHHHhh
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP---DANVIIKKLRE  218 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~---~~~~~~~~~~~  218 (262)
                      ....++||+|++....++.    .....++..+ ++|+|||++++...   ....+.+.+..
T Consensus       129 ~~~~~~fD~V~~d~~~~~~----~~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~  185 (221)
T 3u81_A          129 KYDVDTLDMVFLDHWKDRY----LPDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRG  185 (221)
T ss_dssp             TSCCCCCSEEEECSCGGGH----HHHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHH
T ss_pred             hcCCCceEEEEEcCCcccc----hHHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhh
Confidence            0012689999998877765    5556677777 99999999998643   33444555544

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.58  E-value=1.5e-14  Score=122.55  Aligned_cols=113  Identities=16%  Similarity=0.197  Sum_probs=89.7

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-C-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      ...++..+...++.+|||+|||+|.++..+++. . .++|+|+|+|+.+++.|++++...+.         .++.+.++|
T Consensus        64 ~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~---------~~v~~~~~d  134 (317)
T 1dl5_A           64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI---------ENVIFVCGD  134 (317)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC---------CSEEEEESC
T ss_pred             HHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC---------CCeEEEECC
Confidence            444555556678899999999999998888764 2 35699999999999999998763221         248999999


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      +.+...     +.++||+|++..+++|+  .        ..+.++|+|||.+++.+...
T Consensus       135 ~~~~~~-----~~~~fD~Iv~~~~~~~~--~--------~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          135 GYYGVP-----EFSPYDVIFVTVGVDEV--P--------ETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             GGGCCG-----GGCCEEEEEECSBBSCC--C--------HHHHHHEEEEEEEEEEBCBG
T ss_pred             hhhccc-----cCCCeEEEEEcCCHHHH--H--------HHHHHhcCCCcEEEEEECCC
Confidence            877543     35789999999999987  2        46888999999999987544

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.58  E-value=7.7e-15  Score=118.61  Aligned_cols=103  Identities=16%  Similarity=0.129  Sum_probs=81.6

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc----cc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE----VH  155 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~----~~  155 (262)
                      ...++.+|||+|||+|.++..++.. +.++|+|+|+|+.+++.++++...           ..++.++++|+..    .+
T Consensus        71 ~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~-----------~~~v~~~~~d~~~~~~~~~  139 (230)
T 1fbn_A           71 PIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----------RENIIPILGDANKPQEYAN  139 (230)
T ss_dssp             CCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----------CTTEEEEECCTTCGGGGTT
T ss_pred             CCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhc-----------CCCeEEEECCCCCcccccc
Confidence            3457889999999999999988765 446899999999999999988652           1468999999877    43


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +     . ++||+|++     ++ ........++.++.++|+|||.+++.+
T Consensus       140 ~-----~-~~~D~v~~-----~~-~~~~~~~~~l~~~~~~LkpgG~l~i~~  178 (230)
T 1fbn_A          140 I-----V-EKVDVIYE-----DV-AQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             T-----S-CCEEEEEE-----CC-CSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c-----C-ccEEEEEE-----ec-CChhHHHHHHHHHHHhCCCCcEEEEEE
Confidence            3     3 78999983     22 123345778999999999999999863

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.58  E-value=8e-15  Score=125.73  Aligned_cols=136  Identities=22%  Similarity=0.276  Sum_probs=92.6

Q ss_pred             hhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCC------CCcchHHHHhc--CC
Q 024797           36 TKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACG------KGGDLIKWDKA--KI  107 (262)
Q Consensus        36 ~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG------~G~~~~~l~~~--~~  107 (262)
                      ....|+.++..|.......           ...+......++..+ ..++.+|||||||      +|..+..+++.  +.
T Consensus       180 ~~~~fd~lA~~Y~tDK~~~-----------~h~y~~~Ye~lL~~l-~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~  247 (419)
T 3sso_A          180 RKPDLSELSSRYFTPKFGF-----------LHWFTPHYDRHFRDY-RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPR  247 (419)
T ss_dssp             CCCCHHHHHHHTTCTTBSS-----------SCBCHHHHHHHHGGG-TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTT
T ss_pred             CCccHHHHHHHhCCCcccc-----------cchHHHHHHHHHHhh-cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCC
Confidence            3456777888885322210           112222334444433 2467899999999      66666666653  56


Q ss_pred             CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc-cCCCCCeeEEEEcccccccCCCHHHHH
Q 024797          108 GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV-LADDAPFDICSCQFAMHYSWSTEARAR  186 (262)
Q Consensus       108 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~~~  186 (262)
                      .+|+|+|+|+.|.      ..            ..+++++++|+.++++... ...+++||+|++... ++.    .+..
T Consensus       248 a~V~GVDiSp~m~------~~------------~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdgs-H~~----~d~~  304 (419)
T 3sso_A          248 GQIYGLDIMDKSH------VD------------ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDGS-HIN----AHVR  304 (419)
T ss_dssp             CEEEEEESSCCGG------GC------------BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECSC-CCH----HHHH
T ss_pred             CEEEEEECCHHHh------hc------------CCCcEEEEecccccchhhhhhcccCCccEEEECCc-ccc----hhHH
Confidence            6899999999982      11            3469999999998776210 001588999998754 544    7789


Q ss_pred             HHHHHHHhccCCCcEEEEEe
Q 024797          187 RALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       187 ~~l~~~~~~L~~gG~li~~~  206 (262)
                      .+|+++.++|||||++++..
T Consensus       305 ~aL~el~rvLKPGGvlVi~D  324 (419)
T 3sso_A          305 TSFAALFPHVRPGGLYVIED  324 (419)
T ss_dssp             HHHHHHGGGEEEEEEEEEEC
T ss_pred             HHHHHHHHhcCCCeEEEEEe
Confidence            99999999999999999964

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.58  E-value=5.5e-15  Score=126.54  Aligned_cols=121  Identities=15%  Similarity=0.203  Sum_probs=92.8

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      ..+.++..+...++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.|+++....          ...+.++++|
T Consensus       184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~----------~~~~~~~~~d  253 (343)
T 2pjd_A          184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN----------GVEGEVFASN  253 (343)
T ss_dssp             HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT----------TCCCEEEECS
T ss_pred             HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----------CCCCEEEEcc
Confidence            34445554434567799999999999999887754 348999999999999999987632          2236678888


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCC-CHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      +...       .+++||+|+++..+|+... .......+++++.++|+|||.+++..++.
T Consensus       254 ~~~~-------~~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  306 (343)
T 2pjd_A          254 VFSE-------VKGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAF  306 (343)
T ss_dssp             TTTT-------CCSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred             cccc-------ccCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence            7653       3578999999998875210 23567899999999999999999987654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.58  E-value=7.2e-15  Score=117.62  Aligned_cols=116  Identities=17%  Similarity=0.190  Sum_probs=83.2

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      .+..+...++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.+.+...+..     ......++.++++|+.++
T Consensus        19 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~-----~~~~~~~v~~~~~d~~~l   93 (218)
T 3mq2_A           19 EFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKP-----AKGGLPNLLYLWATAERL   93 (218)
T ss_dssp             HHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCG-----GGTCCTTEEEEECCSTTC
T ss_pred             HHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhh-----hhcCCCceEEEecchhhC
Confidence            4444556788899999999999999888753 5689999999999996543332110     011123699999999998


Q ss_pred             ccccccCCCCCeeEEEEccccc-----ccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          155 HLDKVLADDAPFDICSCQFAMH-----YSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~-----~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ++     +++. |.|.+.....     |+    .++..+++++.++|||||.+++++
T Consensus        94 ~~-----~~~~-d~v~~~~~~~~~~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A           94 PP-----LSGV-GELHVLMPWGSLLRGVL----GSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             CS-----CCCE-EEEEEESCCHHHHHHHH----TSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             CC-----CCCC-CEEEEEccchhhhhhhh----ccHHHHHHHHHHHcCCCcEEEEEe
Confidence            76     4555 7776433211     22    234789999999999999999975

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.58  E-value=8.2e-15  Score=126.01  Aligned_cols=119  Identities=18%  Similarity=0.166  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC
Q 024797           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (262)
Q Consensus        70 ~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (262)
                      ..|.+.+.......++.+|||||||+|.++...++.+..+|+|||.|+ |++.|++....        +++..+|+++++
T Consensus        69 ~aY~~Ai~~~~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~--------n~~~~~i~~i~~  139 (376)
T 4hc4_A           69 DAYRLGILRNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRF--------NGLEDRVHVLPG  139 (376)
T ss_dssp             HHHHHHHHTTHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHH--------TTCTTTEEEEES
T ss_pred             HHHHHHHHhCHHhcCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHH--------cCCCceEEEEee
Confidence            344444544444457899999999999888877777788999999996 88999887763        345667999999


Q ss_pred             cccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       150 d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      |+.++.+      +++||+|++-..-..+ ........++....++|+|||.++.
T Consensus       140 ~~~~~~l------pe~~DvivsE~~~~~l-~~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          140 PVETVEL------PEQVDAIVSEWMGYGL-LHESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             CTTTCCC------SSCEEEEECCCCBTTB-TTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             eeeeecC------CccccEEEeecccccc-cccchhhhHHHHHHhhCCCCceECC
Confidence            9998875      4789999984422211 1234577888899999999999873

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.58  E-value=4.4e-14  Score=121.46  Aligned_cols=124  Identities=19%  Similarity=0.070  Sum_probs=95.4

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      .++......++.+|||+|||+|.++..++..  +...++|+|+++.+++.|++++...        +.. ++++.++|+.
T Consensus       194 ~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~--------g~~-~i~~~~~D~~  264 (354)
T 3tma_A          194 ALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALAS--------GLS-WIRFLRADAR  264 (354)
T ss_dssp             HHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHT--------TCT-TCEEEECCGG
T ss_pred             HHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHc--------CCC-ceEEEeCChh
Confidence            3444445567889999999999999988763  4568999999999999999998743        223 6999999999


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCC----HHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWST----EARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~----~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      +++.     +.+.||+|+++..+......    ......+++++.++|+|||.+++.+++.+.+
T Consensus       265 ~~~~-----~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~  323 (354)
T 3tma_A          265 HLPR-----FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALL  323 (354)
T ss_dssp             GGGG-----TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHH
T ss_pred             hCcc-----ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHH
Confidence            8875     45679999997654332111    1234789999999999999999999988654

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.57  E-value=1.8e-14  Score=125.96  Aligned_cols=121  Identities=12%  Similarity=0.175  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHH-------HHHhccCccccccccCCC
Q 024797           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDC-------RTRYNGDADHHQRRKKFS  141 (262)
Q Consensus        70 ~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a-------~~~~~~~~~~~~~~~~~~  141 (262)
                      ..++..++..+...++.+|||+|||+|.++..++.. +...|+|+|+++.+++.|       ++++...+..       .
T Consensus       228 p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~-------~  300 (433)
T 1u2z_A          228 PNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMR-------L  300 (433)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBC-------C
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCC-------C
Confidence            345566666666778899999999999999988773 556899999999999998       7666532210       1


Q ss_pred             CCeEEEeCccccc--ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          142 FPARLICGDCYEV--HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       142 ~~v~~~~~d~~~~--~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .+++++++|....  ++..   ..++||+|+++.++ +.    ++...++.++.++|+|||.+++.
T Consensus       301 ~nV~~i~gD~~~~~~~~~~---~~~~FDvIvvn~~l-~~----~d~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          301 NNVEFSLKKSFVDNNRVAE---LIPQCDVILVNNFL-FD----EDLNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             CCEEEEESSCSTTCHHHHH---HGGGCSEEEECCTT-CC----HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             CceEEEEcCcccccccccc---ccCCCCEEEEeCcc-cc----ccHHHHHHHHHHhCCCCeEEEEe
Confidence            4688988865421  1100   13689999987666 22    56778899999999999999986

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.57  E-value=1.8e-14  Score=116.58  Aligned_cols=105  Identities=16%  Similarity=0.194  Sum_probs=84.2

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc-ccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  159 (262)
                      ..++.+|||+|||+|..+..++.. +..+|+++|+++.+++.|++++...        +...++.++++|+.+... .  
T Consensus        69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~~~--  138 (232)
T 3ntv_A           69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATY--------HFENQVRIIEGNALEQFENV--  138 (232)
T ss_dssp             HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHT--------TCTTTEEEEESCGGGCHHHH--
T ss_pred             hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEECCHHHHHHhh--
Confidence            357889999999999999988763 3568999999999999999988743        223469999999976421 0  


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        .+++||+|++.....       ....+++.+.++|+|||++++.
T Consensus       139 --~~~~fD~V~~~~~~~-------~~~~~l~~~~~~LkpgG~lv~d  175 (232)
T 3ntv_A          139 --NDKVYDMIFIDAAKA-------QSKKFFEIYTPLLKHQGLVITD  175 (232)
T ss_dssp             --TTSCEEEEEEETTSS-------SHHHHHHHHGGGEEEEEEEEEE
T ss_pred             --ccCCccEEEEcCcHH-------HHHHHHHHHHHhcCCCeEEEEe
Confidence              257899999876543       3567999999999999999985

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.57  E-value=2.3e-14  Score=123.41  Aligned_cols=115  Identities=21%  Similarity=0.255  Sum_probs=91.3

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ++..+...++.+|||+|||+|.++..+++. +...++++|+ +.+++.|++++...        +...+++++++|+.+ 
T Consensus       175 l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~-  244 (360)
T 1tw3_A          175 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE--------GLSDRVDVVEGDFFE-  244 (360)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT--------TCTTTEEEEECCTTS-
T ss_pred             HHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc--------CCCCceEEEeCCCCC-
Confidence            344444456789999999999999888764 3457999999 99999999987632        233469999999875 


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ++     + ..||+|++..++|++  +.++...+++++.++|+|||.+++..+.
T Consensus       245 ~~-----~-~~~D~v~~~~vl~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e~~  290 (360)
T 1tw3_A          245 PL-----P-RKADAIILSFVLLNW--PDHDAVRILTRCAEALEPGGRILIHERD  290 (360)
T ss_dssp             CC-----S-SCEEEEEEESCGGGS--CHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CC-----C-CCccEEEEcccccCC--CHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence            33     3 349999999999988  6666789999999999999999887543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.57  E-value=4.4e-15  Score=118.57  Aligned_cols=88  Identities=22%  Similarity=0.271  Sum_probs=73.7

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..+.    ..++|+|+|+.         .               +.+.++|+.++++     +
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------~---------------~~~~~~d~~~~~~-----~  112 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------D---------------PRVTVCDMAQVPL-----E  112 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------S---------------TTEEESCTTSCSC-----C
T ss_pred             CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------C---------------ceEEEeccccCCC-----C
Confidence            467899999999998877662    58999999986         1               6678999988775     6


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +++||+|++..++|+     .+...+++++.++|+|||.+++..+.
T Consensus       113 ~~~fD~v~~~~~l~~-----~~~~~~l~~~~~~L~~gG~l~i~~~~  153 (215)
T 2zfu_A          113 DESVDVAVFCLSLMG-----TNIRDFLEEANRVLKPGGLLKVAEVS  153 (215)
T ss_dssp             TTCEEEEEEESCCCS-----SCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred             CCCEeEEEEehhccc-----cCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence            789999999999963     45688999999999999999997643

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.56  E-value=8.5e-15  Score=117.99  Aligned_cols=111  Identities=18%  Similarity=0.189  Sum_probs=77.2

Q ss_pred             hccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCC-hhHHHHH---HHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIA-EGSIEDC---RTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s-~~~~~~a---~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ...++.+|||||||+|.++..+++ .+...|+|+|+| +.|++.|   +++....+         ..++.+.++|+..++
T Consensus        21 ~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~---------~~~v~~~~~d~~~l~   91 (225)
T 3p2e_A           21 IGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGG---------LSNVVFVIAAAESLP   91 (225)
T ss_dssp             HTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTC---------CSSEEEECCBTTBCC
T ss_pred             hCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcC---------CCCeEEEEcCHHHhh
Confidence            346788999999999999998875 345579999999 7777776   55544221         235899999998875


Q ss_pred             cccccCCCCCeeEEEEcccccccCC-CHHHHHHHHHHHHhccCCCcEEEE
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWS-TEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~-~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      ..    ..+.+|.|.+++...+... ...+...++++++++|||||.+++
T Consensus        92 ~~----~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i  137 (225)
T 3p2e_A           92 FE----LKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF  137 (225)
T ss_dssp             GG----GTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred             hh----ccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence            31    1256777766553321000 001124689999999999999988

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.56  E-value=1.2e-14  Score=120.61  Aligned_cols=112  Identities=13%  Similarity=0.183  Sum_probs=87.8

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccC-ccccccccCCCCCeEEEeCccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGD-ADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ++..+...++.+|||+|||+|.++..+++.  +..+|+|+|+++.+++.|++++... +         ..++.+.++|+.
T Consensus       102 ~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g---------~~~v~~~~~d~~  172 (275)
T 1yb2_A          102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD---------IGNVRTSRSDIA  172 (275)
T ss_dssp             ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC---------CTTEEEECSCTT
T ss_pred             HHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCC---------CCcEEEEECchh
Confidence            333445567889999999999999988764  3568999999999999999987632 1         245899999987


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      + ++     ++++||+|++.     +    +++..+++++.++|+|||.+++.+++.+.
T Consensus       173 ~-~~-----~~~~fD~Vi~~-----~----~~~~~~l~~~~~~LkpgG~l~i~~~~~~~  216 (275)
T 1yb2_A          173 D-FI-----SDQMYDAVIAD-----I----PDPWNHVQKIASMMKPGSVATFYLPNFDQ  216 (275)
T ss_dssp             T-CC-----CSCCEEEEEEC-----C----SCGGGSHHHHHHTEEEEEEEEEEESSHHH
T ss_pred             c-cC-----cCCCccEEEEc-----C----cCHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence            7 33     56789999982     2    23467899999999999999999988744

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.56  E-value=1.6e-14  Score=116.43  Aligned_cols=109  Identities=15%  Similarity=0.099  Sum_probs=78.5

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +.+.++.+|||+|||+|..+..++..  +.+.|+|+|+|+.|++...+...+           ..++.++++|+......
T Consensus        72 ~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~-----------r~nv~~i~~Da~~~~~~  140 (232)
T 3id6_C           72 NPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQR-----------RPNIFPLLADARFPQSY  140 (232)
T ss_dssp             CSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHH-----------CTTEEEEECCTTCGGGT
T ss_pred             cCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhh-----------cCCeEEEEcccccchhh
Confidence            34678999999999999999888763  567999999999987554443321           13599999998764321


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ..  ..++||+|++..+..      .....+...+.+.|||||.|++++.
T Consensus       141 ~~--~~~~~D~I~~d~a~~------~~~~il~~~~~~~LkpGG~lvisik  182 (232)
T 3id6_C          141 KS--VVENVDVLYVDIAQP------DQTDIAIYNAKFFLKVNGDMLLVIK  182 (232)
T ss_dssp             TT--TCCCEEEEEECCCCT------THHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             hc--cccceEEEEecCCCh------hHHHHHHHHHHHhCCCCeEEEEEEc
Confidence            11  246899999886542      2234445566779999999998853

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.56  E-value=3e-14  Score=121.43  Aligned_cols=103  Identities=20%  Similarity=0.134  Sum_probs=86.6

Q ss_pred             CeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           86 DVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      .+|||+|||+|..+..+++. +..+++++|+ +.+++.|++++...        +...+++++.+|+.+ ++     + +
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~-~~-----~-~  232 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL--------LAGERVSLVGGDMLQ-EV-----P-S  232 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH--------HHTTSEEEEESCTTT-CC-----C-S
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc--------CCCCcEEEecCCCCC-CC-----C-C
Confidence            89999999999999988764 4458999999 99999999886521        223469999999877 44     3 6


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .||+|++..++|++  +.+....++++++++|+|||++++..
T Consensus       233 ~~D~v~~~~vl~~~--~~~~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          233 NGDIYLLSRIIGDL--DEAASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             SCSEEEEESCGGGC--CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCCEEEEchhccCC--CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            79999999999988  66777899999999999999998874

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.56  E-value=2.8e-14  Score=116.89  Aligned_cols=115  Identities=18%  Similarity=0.279  Sum_probs=91.4

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      .++......++.+|||+|||+|.++..++..  +..+++++|+|+.+++.|++++...        +...++++.++|+.
T Consensus        84 ~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~  155 (255)
T 3mb5_A           84 LIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA--------GFDDRVTIKLKDIY  155 (255)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH--------TCTTTEEEECSCGG
T ss_pred             HHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc--------CCCCceEEEECchh
Confidence            3455556678899999999999999988775  3668999999999999999987632        22345999999987


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      +. +     ++++||+|++..         .++..++.++.++|+|||.+++..+..+..
T Consensus       156 ~~-~-----~~~~~D~v~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~  200 (255)
T 3mb5_A          156 EG-I-----EEENVDHVILDL---------PQPERVVEHAAKALKPGGFFVAYTPCSNQV  200 (255)
T ss_dssp             GC-C-----CCCSEEEEEECS---------SCGGGGHHHHHHHEEEEEEEEEEESSHHHH
T ss_pred             hc-c-----CCCCcCEEEECC---------CCHHHHHHHHHHHcCCCCEEEEEECCHHHH
Confidence            54 3     567899999743         234578999999999999999998876543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.56  E-value=1.6e-15  Score=120.70  Aligned_cols=124  Identities=15%  Similarity=0.068  Sum_probs=72.3

Q ss_pred             HHHHHHHHhc-cCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           73 IKSVLVQLYA-RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        73 ~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      +..++..+.. .++.+|||+|||+|.++..+++.. ..+++|+|+|+.+++.|++++...          ..+++++++|
T Consensus        18 ~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~----------~~~~~~~~~d   87 (215)
T 4dzr_A           18 VEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERF----------GAVVDWAAAD   87 (215)
T ss_dssp             HHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-----------------------------CCHHH
T ss_pred             HHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh----------CCceEEEEcc
Confidence            3444444443 578899999999999999888754 448999999999999999887632          1158889999


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCC----CH------------------HHHHHHHHHHHhccCCCcE-EEEEeC
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWS----TE------------------ARARRALANVSALLRPGGT-FIGTMP  207 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~----~~------------------~~~~~~l~~~~~~L~~gG~-li~~~~  207 (262)
                      +.+ ++.......++||+|+++..++....    ..                  +....+++++.++|+|||+ +++.++
T Consensus        88 ~~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  166 (215)
T 4dzr_A           88 GIE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG  166 (215)
T ss_dssp             HHH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT
T ss_pred             hHh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            877 33110001389999999754432200    00                  1127888999999999999 666664

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.56  E-value=1.4e-13  Score=108.68  Aligned_cols=102  Identities=14%  Similarity=0.075  Sum_probs=76.8

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++..              +++++++|+.+++      
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~--------------~~~~~~~d~~~~~------  108 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG--------------GVNFMVADVSEIS------  108 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT--------------TSEEEECCGGGCC------
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC--------------CCEEEECcHHHCC------
Confidence            44678999999999999998877655579999999999999998763              4889999988742      


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                        ++||+|+++..+++.  .......+++++.+++  |+.+++..+..
T Consensus       109 --~~~D~v~~~~p~~~~--~~~~~~~~l~~~~~~~--g~~~~~~~~~~  150 (200)
T 1ne2_A          109 --GKYDTWIMNPPFGSV--VKHSDRAFIDKAFETS--MWIYSIGNAKA  150 (200)
T ss_dssp             --CCEEEEEECCCC---------CHHHHHHHHHHE--EEEEEEEEGGG
T ss_pred             --CCeeEEEECCCchhc--cCchhHHHHHHHHHhc--CcEEEEEcCch
Confidence              689999999998876  2233457889999998  55444444433

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.56  E-value=1.2e-14  Score=111.47  Aligned_cols=109  Identities=13%  Similarity=0.107  Sum_probs=80.5

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ++.+|||+|||+|.++..+++... .++|+|+|+.+++.|+++....        +.  +++++++|+.+.... .....
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~--------~~--~~~~~~~d~~~~~~~-~~~~~  108 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRT--------GL--GARVVALPVEVFLPE-AKAQG  108 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHH--------TC--CCEEECSCHHHHHHH-HHHTT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHc--------CC--ceEEEeccHHHHHHh-hhccC
Confidence            678999999999999998877654 4999999999999999987631        11  689999998763210 00013


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHH--hccCCCcEEEEEeCChH
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~--~~L~~gG~li~~~~~~~  210 (262)
                      ++||+|+++..++ .  .   ...+++.+.  ++|+|||.++++++...
T Consensus       109 ~~~D~i~~~~~~~-~--~---~~~~~~~~~~~~~L~~gG~~~~~~~~~~  151 (171)
T 1ws6_A          109 ERFTVAFMAPPYA-M--D---LAALFGELLASGLVEAGGLYVLQHPKDL  151 (171)
T ss_dssp             CCEEEEEECCCTT-S--C---TTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred             CceEEEEECCCCc-h--h---HHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence            4899999987664 1  2   223444444  99999999999887653

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.56  E-value=3e-14  Score=118.47  Aligned_cols=105  Identities=10%  Similarity=0.014  Sum_probs=85.2

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...        +...+++++++|+.++..     
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n--------~~~~~v~~~~~D~~~~~~-----  189 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLN--------KVEDRMSAYNMDNRDFPG-----  189 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHT--------TCTTTEEEECSCTTTCCC-----
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHc--------CCCceEEEEECCHHHhcc-----
Confidence            3568999999999999999998765557999999999999999987632        233458999999988763     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                       .++||+|++.....        ...++.++.++|+|||.+++....
T Consensus       190 -~~~fD~Vi~~~p~~--------~~~~l~~~~~~LkpgG~l~~~~~~  227 (278)
T 2frn_A          190 -ENIADRILMGYVVR--------THEFIPKALSIAKDGAIIHYHNTV  227 (278)
T ss_dssp             -CSCEEEEEECCCSS--------GGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred             -cCCccEEEECCchh--------HHHHHHHHHHHCCCCeEEEEEEee
Confidence             67899999865422        256888999999999999886654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.56  E-value=1.4e-14  Score=116.48  Aligned_cols=103  Identities=12%  Similarity=0.118  Sum_probs=81.9

Q ss_pred             CCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-CCeEEEeCcccccccccccC
Q 024797           85 GDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~  161 (262)
                      +.+|||+|||+|..+..+++.  ..++|+++|+|+++++.|++++...+        .. .+++++++|+.+....   .
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--------~~~~~i~~~~gda~~~l~~---~  125 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAG--------YSPSRVRFLLSRPLDVMSR---L  125 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTT--------CCGGGEEEECSCHHHHGGG---S
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--------CCcCcEEEEEcCHHHHHHH---h
Confidence            449999999999999988763  35689999999999999999987432        23 4699999998764211   0


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ++++||+|++.....       +...+++++.++|+|||.+++.
T Consensus       126 ~~~~fD~V~~d~~~~-------~~~~~l~~~~~~LkpGG~lv~d  162 (221)
T 3dr5_A          126 ANDSYQLVFGQVSPM-------DLKALVDAAWPLLRRGGALVLA  162 (221)
T ss_dssp             CTTCEEEEEECCCTT-------THHHHHHHHHHHEEEEEEEEET
T ss_pred             cCCCcCeEEEcCcHH-------HHHHHHHHHHHHcCCCcEEEEe
Confidence            367899999876543       3466899999999999999985

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.56  E-value=2.6e-14  Score=115.83  Aligned_cols=113  Identities=15%  Similarity=0.148  Sum_probs=87.3

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ...++..+...++.+|||+|||+|.++..+++....+|+++|+++.+++.|++++...+         ..++.+.++|+ 
T Consensus        80 ~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~---------~~~v~~~~~d~-  149 (235)
T 1jg1_A           80 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAG---------VKNVHVILGDG-  149 (235)
T ss_dssp             HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTT---------CCSEEEEESCG-
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCcEEEECCc-
Confidence            34455555667888999999999999988876432689999999999999999876322         12488999997 


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ..++.    ...+||+|++..+++++  .        .++.+.|+|||.+++.+++.
T Consensus       150 ~~~~~----~~~~fD~Ii~~~~~~~~--~--------~~~~~~L~pgG~lvi~~~~~  192 (235)
T 1jg1_A          150 SKGFP----PKAPYDVIIVTAGAPKI--P--------EPLIEQLKIGGKLIIPVGSY  192 (235)
T ss_dssp             GGCCG----GGCCEEEEEECSBBSSC--C--------HHHHHTEEEEEEEEEEECSS
T ss_pred             ccCCC----CCCCccEEEECCcHHHH--H--------HHHHHhcCCCcEEEEEEecC
Confidence            33331    23469999999999877  2        26889999999999998765

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.55  E-value=3.2e-14  Score=116.66  Aligned_cols=117  Identities=16%  Similarity=0.252  Sum_probs=92.2

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHhc-C-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      .++..+...++.+|||+|||+|.++..+++. . ..+++++|+|+.+++.|++++...       .+ ..++.+.++|+.
T Consensus        87 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-------~g-~~~v~~~~~d~~  158 (258)
T 2pwy_A           87 AMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAF-------WQ-VENVRFHLGKLE  158 (258)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH-------CC-CCCEEEEESCGG
T ss_pred             HHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh-------cC-CCCEEEEECchh
Confidence            3444555678899999999999999988775 3 568999999999999999987521       01 346899999998


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHH
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII  213 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~  213 (262)
                      +.++     ++++||+|++..         .+...++.++.++|+|||.+++.++..+.+.
T Consensus       159 ~~~~-----~~~~~D~v~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~  205 (258)
T 2pwy_A          159 EAEL-----EEAAYDGVALDL---------MEPWKVLEKAALALKPDRFLVAYLPNITQVL  205 (258)
T ss_dssp             GCCC-----CTTCEEEEEEES---------SCGGGGHHHHHHHEEEEEEEEEEESCHHHHH
T ss_pred             hcCC-----CCCCcCEEEECC---------cCHHHHHHHHHHhCCCCCEEEEEeCCHHHHH
Confidence            7755     567899999732         2345789999999999999999999875443

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.55  E-value=1.8e-14  Score=119.73  Aligned_cols=118  Identities=19%  Similarity=0.225  Sum_probs=92.7

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccC-ccccccccCCCCCeEEEeCcc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGD-ADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      .++..+...++.+|||+|||+|.++..+++.  +..+++++|+++.+++.|++++... +       ....++.+.++|+
T Consensus        90 ~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g-------~~~~~v~~~~~d~  162 (280)
T 1i9g_A           90 QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYG-------QPPDNWRLVVSDL  162 (280)
T ss_dssp             HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHT-------SCCTTEEEECSCG
T ss_pred             HHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-------CCCCcEEEEECch
Confidence            3444555678899999999999999988764  3568999999999999999987521 1       1134689999999


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHH
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVII  213 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~  213 (262)
                      .+.++     ++++||+|++...         ++..++.++.++|+|||.+++.+++.+.+.
T Consensus       163 ~~~~~-----~~~~~D~v~~~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~  210 (280)
T 1i9g_A          163 ADSEL-----PDGSVDRAVLDML---------APWEVLDAVSRLLVAGGVLMVYVATVTQLS  210 (280)
T ss_dssp             GGCCC-----CTTCEEEEEEESS---------CGGGGHHHHHHHEEEEEEEEEEESSHHHHH
T ss_pred             HhcCC-----CCCceeEEEECCc---------CHHHHHHHHHHhCCCCCEEEEEeCCHHHHH
Confidence            88765     5678999998331         234789999999999999999999876543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.55  E-value=4.3e-14  Score=115.58  Aligned_cols=108  Identities=14%  Similarity=0.105  Sum_probs=85.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-C-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-cccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDK  158 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~  158 (262)
                      ..++.+|||+|||+|..+..+++. + .++|+++|+|+.+++.|++++...        +...+++++++|+.+. +.. 
T Consensus        61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------g~~~~v~~~~~d~~~~l~~~-  131 (248)
T 3tfw_A           61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA--------GVDQRVTLREGPALQSLESL-  131 (248)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT--------TCTTTEEEEESCHHHHHHTC-
T ss_pred             hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEEcCHHHHHHhc-
Confidence            357889999999999999988764 2 568999999999999999988742        3345699999998763 220 


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                        ...++||+|++....       .....+++++.++|+|||++++...
T Consensus       132 --~~~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          132 --GECPAFDLIFIDADK-------PNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             --CSCCCCSEEEECSCG-------GGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             --CCCCCeEEEEECCch-------HHHHHHHHHHHHhcCCCeEEEEeCC
Confidence              023589999987643       3456789999999999999998754

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.55  E-value=2.5e-14  Score=117.02  Aligned_cols=133  Identities=11%  Similarity=0.078  Sum_probs=87.3

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhc---CCCeEEEEeCChhHHHHHHHHhccC---cccccc----------
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAEGSIEDCRTRYNGD---ADHHQR----------  136 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~~~~~~a~~~~~~~---~~~~~~----------  136 (262)
                      +..++..+...++.+|||+|||+|.++..++..   ...+|+|+|+|+.+++.|++++...   +..+..          
T Consensus        40 ~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (250)
T 1o9g_A           40 FQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERF  119 (250)
T ss_dssp             HHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhc
Confidence            333443332235679999999999998888764   2447999999999999999887633   111000          


Q ss_pred             -------ccCCCCCeE-------------EEeCcccccccccccCCCCCeeEEEEcccccccCC-----CHHHHHHHHHH
Q 024797          137 -------RKKFSFPAR-------------LICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS-----TEARARRALAN  191 (262)
Q Consensus       137 -------~~~~~~~v~-------------~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-----~~~~~~~~l~~  191 (262)
                             ......++.             +.++|+.+...........+||+|+++..+.+...     ..+....++++
T Consensus       120 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~  199 (250)
T 1o9g_A          120 GKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRS  199 (250)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHH
Confidence                   000000144             89999876421000001348999999876655421     14677899999


Q ss_pred             HHhccCCCcEEEEE
Q 024797          192 VSALLRPGGTFIGT  205 (262)
Q Consensus       192 ~~~~L~~gG~li~~  205 (262)
                      +.++|+|||++++.
T Consensus       200 ~~~~LkpgG~l~~~  213 (250)
T 1o9g_A          200 LASALPAHAVIAVT  213 (250)
T ss_dssp             HHHHSCTTCEEEEE
T ss_pred             HHHhcCCCcEEEEe
Confidence            99999999999984

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.55  E-value=2.5e-14  Score=115.75  Aligned_cols=109  Identities=18%  Similarity=0.168  Sum_probs=82.8

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ...++.+|||+|||+|.++..+++.  +.++|+|+|+|+.|++.+.+....           ..++.++++|+.+.....
T Consensus        74 ~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~-----------~~~v~~~~~d~~~~~~~~  142 (233)
T 2ipx_A           74 HIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK-----------RTNIIPVIEDARHPHKYR  142 (233)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH-----------CTTEEEECSCTTCGGGGG
T ss_pred             cCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc-----------cCCeEEEEcccCChhhhc
Confidence            3457889999999999999988774  456899999999988877766542           145899999998732100


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                        ..+++||+|++...      .......++.++.++|+|||.+++++..
T Consensus       143 --~~~~~~D~V~~~~~------~~~~~~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          143 --MLIAMVDVIFADVA------QPDQTRIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             --GGCCCEEEEEECCC------CTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             --ccCCcEEEEEEcCC------CccHHHHHHHHHHHHcCCCeEEEEEEcc
Confidence              03578999998654      1234566788999999999999997653

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.54  E-value=8.3e-14  Score=113.48  Aligned_cols=116  Identities=16%  Similarity=0.200  Sum_probs=91.0

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ++......++.+|||+|||+|.++..+++. ..+++++|+++.+++.|+++....        +...++.+.++|+.+..
T Consensus        83 ~~~~~~~~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~~~~~~~d~~~~~  153 (248)
T 2yvl_A           83 IALKLNLNKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKF--------NLGKNVKFFNVDFKDAE  153 (248)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHT--------TCCTTEEEECSCTTTSC
T ss_pred             HHHhcCCCCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHc--------CCCCcEEEEEcChhhcc
Confidence            444445568899999999999999988876 668999999999999999987632        22346899999987754


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHH
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK  214 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~  214 (262)
                      .     +++.||+|++..         .++..+++++.++|+|||.+++.+++.+.+.+
T Consensus       154 ~-----~~~~~D~v~~~~---------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~  198 (248)
T 2yvl_A          154 V-----PEGIFHAAFVDV---------REPWHYLEKVHKSLMEGAPVGFLLPTANQVIK  198 (248)
T ss_dssp             C-----CTTCBSEEEECS---------SCGGGGHHHHHHHBCTTCEEEEEESSHHHHHH
T ss_pred             c-----CCCcccEEEECC---------cCHHHHHHHHHHHcCCCCEEEEEeCCHHHHHH
Confidence            2     356899999742         23457889999999999999999998755443

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.54  E-value=6.3e-14  Score=114.40  Aligned_cols=122  Identities=13%  Similarity=0.193  Sum_probs=84.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc-ccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~  160 (262)
                      .++.+|||+|||+|.++..++... ...|+|+|+|+.+++.|++++......+....+ ..++.++++|+.+ ++.   .
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~-~~nv~~~~~D~~~~l~~---~  123 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHG-FQNINVLRGNAMKFLPN---F  123 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCST-TTTEEEEECCTTSCGGG---T
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccC-CCcEEEEeccHHHHHHH---h
Confidence            467799999999999999988754 448999999999999998876521000000001 2469999999876 331   1


Q ss_pred             CCCCCeeEEEEcccccccCCCHHH------HHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEAR------ARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~------~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      .+.+.+|.|++.+.-.+.  ....      ...++.++.++|+|||.|++.+....
T Consensus       124 ~~~~~~d~v~~~~p~p~~--k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td~~~  177 (246)
T 2vdv_E          124 FEKGQLSKMFFCFPDPHF--KQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKD  177 (246)
T ss_dssp             SCTTCEEEEEEESCCCC--------CSSCCCHHHHHHHHHHEEEEEEEEEEESCHH
T ss_pred             ccccccCEEEEECCCccc--ccchhHHhhccHHHHHHHHHHcCCCCEEEEEeccHH
Confidence            257889999865432211  0000      14799999999999999999876654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.54  E-value=2.5e-14  Score=115.16  Aligned_cols=108  Identities=15%  Similarity=0.155  Sum_probs=83.9

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcC------CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAK------IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ..++.+|||+|||+|.++..+++..      ..+|+|+|+++.+++.|++++...+...    ....++.++++|+....
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~~~~~v~~~~~d~~~~~  153 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPEL----LKIDNFKIIHKNIYQVN  153 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGG----GSSTTEEEEECCGGGCC
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccc----cccCCEEEEECChHhcc
Confidence            5678899999999999988887643      3589999999999999999876321000    00235899999987743


Q ss_pred             ----cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          156 ----LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       156 ----~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                          .     ..++||+|++...++++          +.++.++|+|||++++.++.
T Consensus       154 ~~~~~-----~~~~fD~I~~~~~~~~~----------~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          154 EEEKK-----ELGLFDAIHVGASASEL----------PEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHHH-----HHCCEEEEEECSBBSSC----------CHHHHHHEEEEEEEEEEEEE
T ss_pred             cccCc-----cCCCcCEEEECCchHHH----------HHHHHHhcCCCcEEEEEEcc
Confidence                2     35789999999988765          36789999999999998764

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.54  E-value=4.2e-14  Score=113.76  Aligned_cols=109  Identities=23%  Similarity=0.266  Sum_probs=84.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++.+|||+|||+|..+..+++.  ...+|+|+|+|+.+++.++++....+...    ....++.+.++|+.....   
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~----~~~~~v~~~~~d~~~~~~---  147 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL----LSSGRVQLVVGDGRMGYA---  147 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHH----HHTSSEEEEESCGGGCCG---
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccc----cCCCcEEEEECCcccCcc---
Confidence            567889999999999999888764  33589999999999999998876311000    002358999999876543   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                        ..++||+|++...++++          +.++.++|+|||.++++++..
T Consensus       148 --~~~~fD~i~~~~~~~~~----------~~~~~~~LkpgG~lv~~~~~~  185 (226)
T 1i1n_A          148 --EEAPYDAIHVGAAAPVV----------PQALIDQLKPGGRLILPVGPA  185 (226)
T ss_dssp             --GGCCEEEEEECSBBSSC----------CHHHHHTEEEEEEEEEEESCT
T ss_pred             --cCCCcCEEEECCchHHH----------HHHHHHhcCCCcEEEEEEecC
Confidence              35789999999988765          257889999999999987653

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.53  E-value=6.5e-14  Score=116.24  Aligned_cols=111  Identities=13%  Similarity=0.113  Sum_probs=85.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|..+..++.. +..+|+|+|+|+.+++.|+++....+        . .++.++++|+.+. .     
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~--------~-~~v~~~~~d~~~~-~-----  172 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA--------I-KNIHILQSDWFSA-L-----  172 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT--------C-CSEEEECCSTTGG-G-----
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--------C-CceEEEEcchhhh-c-----
Confidence            56789999999999999988753 45689999999999999999876321        1 2599999998764 2     


Q ss_pred             CCCCeeEEEEccccccc-----------CCC----------HHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHYS-----------WST----------EARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~-----------~~~----------~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ++++||+|+++...+..           +.+          ......++.++.++|+|||.+++..+.
T Consensus       173 ~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~  240 (276)
T 2b3t_A          173 AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW  240 (276)
T ss_dssp             TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS
T ss_pred             ccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc
Confidence            35789999998433211           001          145688999999999999999998753

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.53  E-value=8.8e-14  Score=118.71  Aligned_cols=125  Identities=18%  Similarity=0.256  Sum_probs=88.5

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccc--cccccCCCCCeEEEeCcc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADH--HQRRKKFSFPARLICGDC  151 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~~~~~~~~v~~~~~d~  151 (262)
                      ++..+...++.+|||+|||+|.++..+++.  +.++|+|+|+++.+++.|++++...+..  .........++++.++|+
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~  176 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI  176 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred             HHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh
Confidence            444556678899999999999999988774  3368999999999999999987631100  000001134699999999


Q ss_pred             ccc--ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHH
Q 024797          152 YEV--HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK  214 (262)
Q Consensus       152 ~~~--~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~  214 (262)
                      .+.  ++     ++++||+|++.....         ..++.++.++|+|||.+++..++.+.+..
T Consensus       177 ~~~~~~~-----~~~~fD~V~~~~~~~---------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~  227 (336)
T 2b25_A          177 SGATEDI-----KSLTFDAVALDMLNP---------HVTLPVFYPHLKHGGVCAVYVVNITQVIE  227 (336)
T ss_dssp             TCCC------------EEEEEECSSST---------TTTHHHHGGGEEEEEEEEEEESSHHHHHH
T ss_pred             HHccccc-----CCCCeeEEEECCCCH---------HHHHHHHHHhcCCCcEEEEEeCCHHHHHH
Confidence            875  23     456899999864322         23789999999999999999988765443

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.53  E-value=4.7e-14  Score=116.13  Aligned_cols=123  Identities=15%  Similarity=0.050  Sum_probs=86.8

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc--
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK--  158 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--  158 (262)
                      ..++.+|||+|||+|.++..++... ...++|+|+++.+++.|++++.....     .++..++.++++|+.+.....  
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~-----~~l~~~v~~~~~D~~~~~~~~~~  108 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDN-----AAFSARIEVLEADVTLRAKARVE  108 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGG-----TTTGGGEEEEECCTTCCHHHHHH
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhh-----CCCcceEEEEeCCHHHHhhhhhh
Confidence            3467799999999999998887653 45899999999999999998763000     122345999999998762100  


Q ss_pred             ccCCCCCeeEEEEcccccccC--------------CCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          159 VLADDAPFDICSCQFAMHYSW--------------STEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~--------------~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ...++++||+|+++..+....              ........+++.+.++|+|||.+++..+..
T Consensus       109 ~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  173 (260)
T 2ozv_A          109 AGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQ  173 (260)
T ss_dssp             TTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred             hccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHH
Confidence            001467899999984332110              011225788999999999999999887654

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.53  E-value=8.5e-14  Score=114.10  Aligned_cols=127  Identities=13%  Similarity=0.094  Sum_probs=89.9

Q ss_pred             hHHHHHHHHHHHHhcc-CCCeEEEecCCC--CcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCC
Q 024797           68 KLNNWIKSVLVQLYAR-RGDVVLDLACGK--GGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF  142 (262)
Q Consensus        68 ~~~~~~~~~l~~~~~~-~~~~vLDiGcG~--G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~  142 (262)
                      .-+.|+.+.+..+... ....|||+|||.  +..+..+++  .+..+|+++|.|+.|++.|++++...         ...
T Consensus        61 ~nr~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~---------~~~  131 (277)
T 3giw_A           61 ANRDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAST---------PEG  131 (277)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCC---------SSS
T ss_pred             HHHHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccC---------CCC
Confidence            3345666666655433 346899999997  445555544  35568999999999999999988631         123


Q ss_pred             CeEEEeCccccccc--ccccCCCCCee-----EEEEcccccccCCCHH-HHHHHHHHHHhccCCCcEEEEEe
Q 024797          143 PARLICGDCYEVHL--DKVLADDAPFD-----ICSCQFAMHYSWSTEA-RARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       143 ~v~~~~~d~~~~~~--~~~~~~~~~fD-----~V~~~~~l~~~~~~~~-~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ++.++++|+.+...  .... ..+.||     .|+++.++||+  +.. ++..+++++.+.|+|||+|+++.
T Consensus       132 ~~~~v~aD~~~~~~~l~~~~-~~~~~D~~~p~av~~~avLH~l--~d~~~p~~~l~~l~~~L~PGG~Lvls~  200 (277)
T 3giw_A          132 RTAYVEADMLDPASILDAPE-LRDTLDLTRPVALTVIAIVHFV--LDEDDAVGIVRRLLEPLPSGSYLAMSI  200 (277)
T ss_dssp             EEEEEECCTTCHHHHHTCHH-HHTTCCTTSCCEEEEESCGGGS--CGGGCHHHHHHHHHTTSCTTCEEEEEE
T ss_pred             cEEEEEecccChhhhhcccc-cccccCcCCcchHHhhhhHhcC--CchhhHHHHHHHHHHhCCCCcEEEEEe
Confidence            58999999987531  0000 013344     57889999998  333 26889999999999999999985

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.53  E-value=4.7e-14  Score=114.08  Aligned_cols=107  Identities=20%  Similarity=0.233  Sum_probs=84.9

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-ccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~  159 (262)
                      ..++.+|||+|||+|..+..+++. +..+|+++|+++.+++.|++++...        +...++.++++|+.+. +..  
T Consensus        52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~~~--  121 (233)
T 2gpy_A           52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKAL--------GLESRIELLFGDALQLGEKL--  121 (233)
T ss_dssp             HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHT--------TCTTTEEEECSCGGGSHHHH--
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEECCHHHHHHhc--
Confidence            457889999999999999888764 3568999999999999999987632        2234689999998764 220  


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                       ..+++||+|++.....       +...+++.+.++|+|||.+++..
T Consensus       122 -~~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          122 -ELYPLFDVLFIDAAKG-------QYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             -TTSCCEEEEEEEGGGS-------CHHHHHHHHGGGEEEEEEEEEET
T ss_pred             -ccCCCccEEEECCCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence             0147899999877653       35788999999999999999974

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.52  E-value=6.9e-14  Score=112.28  Aligned_cols=111  Identities=15%  Similarity=0.135  Sum_probs=84.3

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++.+|||+|||+|..+..+++..  .++|+++|+++.+++.|++++...        +...+++++++|+.+......
T Consensus        56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~~~~  127 (223)
T 3duw_A           56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA--------NLNDRVEVRTGLALDSLQQIE  127 (223)
T ss_dssp             HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT--------TCTTTEEEEESCHHHHHHHHH
T ss_pred             hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEEcCHHHHHHHHH
Confidence            3578899999999999999887642  468999999999999999988642        234469999999865321000


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ....++||+|++.....       ....++.++.++|+|||.+++...
T Consensus       128 ~~~~~~fD~v~~d~~~~-------~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          128 NEKYEPFDFIFIDADKQ-------NNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             HTTCCCCSEEEECSCGG-------GHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             hcCCCCcCEEEEcCCcH-------HHHHHHHHHHHhcCCCcEEEEeCC
Confidence            00126799999876543       356889999999999999998754

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.52  E-value=9e-14  Score=116.98  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=84.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|..+..+++. +..+|+++|+|+.+++.|++++.....     .....+++++++|+..+...   .
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~-----~~~~~~v~~~~~D~~~~~~~---~  165 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR-----SLADPRATVRVGDGLAFVRQ---T  165 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-----GGGCTTEEEEESCHHHHHHS---S
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhc-----ccCCCcEEEEECcHHHHHHh---c
Confidence            56789999999999999988875 356899999999999999998731100     01135699999998776431   0


Q ss_pred             CCCCeeEEEEcccccccCCCHHHH--HHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARA--RRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~--~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ++++||+|++.....+.  +....  ..+++++.++|+|||++++...+
T Consensus       166 ~~~~fDvIi~d~~~~~~--~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  212 (304)
T 3bwc_A          166 PDNTYDVVIIDTTDPAG--PASKLFGEAFYKDVLRILKPDGICCNQGES  212 (304)
T ss_dssp             CTTCEEEEEEECC-----------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cCCceeEEEECCCCccc--cchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            25789999997665432  11112  68899999999999999998765

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.52  E-value=5.9e-14  Score=115.13  Aligned_cols=102  Identities=25%  Similarity=0.269  Sum_probs=82.1

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++....        +.  .+++.++|+.+. +     
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~--------~~--~v~~~~~d~~~~-~-----  180 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRN--------GV--RPRFLEGSLEAA-L-----  180 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHT--------TC--CCEEEESCHHHH-G-----
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHc--------CC--cEEEEECChhhc-C-----
Confidence            46788999999999999888876555 9999999999999999987621        11  278899998663 2     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ++++||+|+++...+       ....++.++.++|+|||.++++..
T Consensus       181 ~~~~fD~Vv~n~~~~-------~~~~~l~~~~~~LkpgG~lils~~  219 (254)
T 2nxc_A          181 PFGPFDLLVANLYAE-------LHAALAPRYREALVPGGRALLTGI  219 (254)
T ss_dssp             GGCCEEEEEEECCHH-------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cCCCCCEEEECCcHH-------HHHHHHHHHHHHcCCCCEEEEEee
Confidence            357899999875443       357899999999999999998653

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.51  E-value=2.7e-14  Score=110.03  Aligned_cols=99  Identities=14%  Similarity=0.114  Sum_probs=77.1

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..+++..  +|+|+|+|+.|++.    ..              +++++++|+.+ ++     +
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~----~~--------------~~~~~~~d~~~-~~-----~   75 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES----HR--------------GGNLVRADLLC-SI-----N   75 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT----CS--------------SSCEEECSTTT-TB-----C
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc----cc--------------CCeEEECChhh-hc-----c
Confidence            467799999999999999887655  99999999999988    11              37899999977 34     4


Q ss_pred             CCCeeEEEEcccccccCCC-----HHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          163 DAPFDICSCQFAMHYSWST-----EARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~-----~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +++||+|+++..+++..+.     ..+...++.++.+.| |||.+++..+.
T Consensus        76 ~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~  125 (170)
T 3q87_B           76 QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE  125 (170)
T ss_dssp             GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred             cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence            5899999998887753111     113356788888888 99999987653

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.51  E-value=3.5e-14  Score=117.81  Aligned_cols=109  Identities=10%  Similarity=0.075  Sum_probs=78.1

Q ss_pred             HHHHHHHhcc-CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeE-EEeCcc
Q 024797           74 KSVLVQLYAR-RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR-LICGDC  151 (262)
Q Consensus        74 ~~~l~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~-~~~~d~  151 (262)
                      ..++..+... ++.+|||+|||+|.++..+++.+..+|+|+|+|+.|++.+.+...              ++. +...++
T Consensus        74 ~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~--------------rv~~~~~~ni  139 (291)
T 3hp7_A           74 EKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDD--------------RVRSMEQYNF  139 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCT--------------TEEEECSCCG
T ss_pred             HHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCc--------------ccceecccCc
Confidence            3444444443 567999999999999998887777799999999999998654321              122 223344


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ..+....+  +..+||+|++..+++++       ..+|.+++++|+|||.+++.
T Consensus       140 ~~l~~~~l--~~~~fD~v~~d~sf~sl-------~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          140 RYAEPVDF--TEGLPSFASIDVSFISL-------NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             GGCCGGGC--TTCCCSEEEECCSSSCG-------GGTHHHHHHHSCTTCEEEEE
T ss_pred             eecchhhC--CCCCCCEEEEEeeHhhH-------HHHHHHHHHHcCcCCEEEEE
Confidence            33332111  34469999998888754       67999999999999999886

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.51  E-value=4.1e-14  Score=114.00  Aligned_cols=117  Identities=20%  Similarity=0.172  Sum_probs=86.5

Q ss_pred             HHHHHHHH--hccCCCeEEEecCCCCcchHHHHhc-C------CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCC
Q 024797           73 IKSVLVQL--YARRGDVVLDLACGKGGDLIKWDKA-K------IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP  143 (262)
Q Consensus        73 ~~~~l~~~--~~~~~~~vLDiGcG~G~~~~~l~~~-~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~  143 (262)
                      ...++..+  ...++.+|||+|||+|.++..+++. +      .++|+++|+++.+++.|++++...+...    ....+
T Consensus        71 ~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~~~~~  146 (227)
T 1r18_A           71 HAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM----LDSGQ  146 (227)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH----HHHTS
T ss_pred             HHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccc----cCCCc
Confidence            33444444  3567889999999999998888763 2      2589999999999999998875321000    00135


Q ss_pred             eEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       144 v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +.+.++|+.. .+.    ..++||+|++..+++++.          .++.+.|+|||++++.+..
T Consensus       147 v~~~~~d~~~-~~~----~~~~fD~I~~~~~~~~~~----------~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          147 LLIVEGDGRK-GYP----PNAPYNAIHVGAAAPDTP----------TELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             EEEEESCGGG-CCG----GGCSEEEEEECSCBSSCC----------HHHHHTEEEEEEEEEEESC
T ss_pred             eEEEECCccc-CCC----cCCCccEEEECCchHHHH----------HHHHHHhcCCCEEEEEEec
Confidence            8999999876 231    237899999999998761          6789999999999998764

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.51  E-value=9.1e-14  Score=118.22  Aligned_cols=115  Identities=17%  Similarity=0.091  Sum_probs=84.8

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCC-CeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++...        ++.. ++.++++|+.++... ...
T Consensus       152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~--------gl~~~~v~~i~~D~~~~l~~-~~~  221 (332)
T 2igt_A          152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLA--------GLEQAPIRWICEDAMKFIQR-EER  221 (332)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHH--------TCTTSCEEEECSCHHHHHHH-HHH
T ss_pred             CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHc--------CCCccceEEEECcHHHHHHH-HHh
Confidence            4678999999999999999887655 8999999999999999987632        2222 489999998775320 000


Q ss_pred             CCCCeeEEEEcccccc------cCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          162 DDAPFDICSCQFAMHY------SWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~------~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ..++||+|+++.....      .+....+...++..+.++|+|||.+++.+.
T Consensus       222 ~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~  273 (332)
T 2igt_A          222 RGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA  273 (332)
T ss_dssp             HTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred             cCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence            1468999999543110      011236778999999999999999777653

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.51  E-value=6.2e-14  Score=112.65  Aligned_cols=110  Identities=17%  Similarity=0.090  Sum_probs=83.7

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc-cccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-LDKV  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~  159 (262)
                      .++.+|||+|||+|..+..++..  ...+|+++|+++.+++.|++++...        +...+++++++|+.+.. ....
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~~~~~  134 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA--------GLSDKIGLRLSPAKDTLAELIH  134 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT--------TCTTTEEEEESCHHHHHHHHHT
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC--------CCCCceEEEeCCHHHHHHHhhh
Confidence            46789999999999999988764  2568999999999999999988643        23346999999986542 1000


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ....++||+|++....       .....++.++.++|+|||++++...
T Consensus       135 ~~~~~~fD~v~~~~~~-------~~~~~~l~~~~~~L~pgG~lv~~~~  175 (225)
T 3tr6_A          135 AGQAWQYDLIYIDADK-------ANTDLYYEESLKLLREGGLIAVDNV  175 (225)
T ss_dssp             TTCTTCEEEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred             ccCCCCccEEEECCCH-------HHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            0011789999976643       3457799999999999999998753

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.51  E-value=8.8e-14  Score=111.98  Aligned_cols=106  Identities=17%  Similarity=0.141  Sum_probs=81.9

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++.+|||+|||+|.++..+++.  +.++|+|+|+|+.|++.++++...           ..++.++++|+.+......
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~-----------~~~v~~~~~d~~~~~~~~~  139 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----------RRNIVPILGDATKPEEYRA  139 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----------CTTEEEEECCTTCGGGGTT
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhc-----------cCCCEEEEccCCCcchhhc
Confidence            457889999999999999988764  346899999999999999988762           1469999999876421100


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                        ..++||+|++....      ......++.++.++|+|||.+++.+
T Consensus       140 --~~~~~D~v~~~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          140 --LVPKVDVIFEDVAQ------PTQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             --TCCCEEEEEECCCS------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --ccCCceEEEECCCC------HhHHHHHHHHHHHhcCCCCEEEEEE
Confidence              24589999976542      1334556999999999999998875

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.50  E-value=3.8e-14  Score=109.04  Aligned_cols=103  Identities=19%  Similarity=0.231  Sum_probs=80.1

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc----
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH----  155 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~----  155 (262)
                      ..++.+|||+|||+|.++..+++.  ...+++|+|+|+ +++.                   .++.+.++|+.+.+    
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-------------------~~~~~~~~d~~~~~~~~~   79 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-------------------VGVDFLQGDFRDELVMKA   79 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-------------------TTEEEEESCTTSHHHHHH
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-------------------CcEEEEEcccccchhhhh
Confidence            467889999999999999988765  336899999999 6532                   24889999998765    


Q ss_pred             ----cccccCCCCCeeEEEEcccccccCCCHHH-------HHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          156 ----LDKVLADDAPFDICSCQFAMHYSWSTEAR-------ARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       156 ----~~~~~~~~~~fD~V~~~~~l~~~~~~~~~-------~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                          +     ++++||+|+++..+++......+       ...+++++.++|+|||.+++.++..
T Consensus        80 ~~~~~-----~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           80 LLERV-----GDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             HHHHH-----TTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             hhccC-----CCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence                3     56789999998887765211111       1688999999999999999987643

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.50  E-value=7.1e-13  Score=105.03  Aligned_cols=106  Identities=13%  Similarity=0.079  Sum_probs=82.1

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..++..+...++|+|+|+.+++.++++....          +.+++++++|+.+++      
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~----------~~~~~~~~~d~~~~~------  110 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF----------KGKFKVFIGDVSEFN------  110 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG----------TTSEEEEESCGGGCC------
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHc----------CCCEEEEECchHHcC------
Confidence            4578899999999999999887765668999999999999999987632          116899999988753      


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                        ++||+|+++..+++.  .......+++++.+++  ||.+++.+++.
T Consensus       111 --~~~D~v~~~~p~~~~--~~~~~~~~l~~~~~~l--~~~~~~~~~~~  152 (207)
T 1wy7_A          111 --SRVDIVIMNPPFGSQ--RKHADRPFLLKAFEIS--DVVYSIHLAKP  152 (207)
T ss_dssp             --CCCSEEEECCCCSSS--STTTTHHHHHHHHHHC--SEEEEEEECCH
T ss_pred             --CCCCEEEEcCCCccc--cCCchHHHHHHHHHhc--CcEEEEEeCCc
Confidence              479999999877654  2223456788888888  66666654444

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.50  E-value=2.7e-13  Score=108.62  Aligned_cols=121  Identities=9%  Similarity=0.014  Sum_probs=91.9

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++...        ++..++++.++|+.+...    
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~--------gl~~~I~~~~gD~l~~~~----   86 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH--------GLTSKIDVRLANGLSAFE----   86 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHT--------TCTTTEEEEECSGGGGCC----
T ss_pred             CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEECchhhccc----
Confidence            4678899999999999999887754 457999999999999999998743        345579999999877643    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhhhcC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEG  221 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~  221 (262)
                       +.++||+|++.+..-      +....++....+.|+++|.|+++-......+..+....+
T Consensus        87 -~~~~~D~IviaGmGg------~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L~~~G  140 (230)
T 3lec_A           87 -EADNIDTITICGMGG------RLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWLAAND  140 (230)
T ss_dssp             -GGGCCCEEEEEEECH------HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHTT
T ss_pred             -cccccCEEEEeCCch------HHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHHHHCC
Confidence             334799988655432      457888999999999999999886544433444433333

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.50  E-value=1.1e-13  Score=118.73  Aligned_cols=109  Identities=17%  Similarity=0.128  Sum_probs=82.7

Q ss_pred             HHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           77 LVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        77 l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      +......++.+|||||||+|..+..+++. +..+++++|++ .++.  +++..        ......+++++++|+. .+
T Consensus       177 ~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~--------~~~~~~~v~~~~~d~~-~~  244 (348)
T 3lst_A          177 ARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLD--------APDVAGRWKVVEGDFL-RE  244 (348)
T ss_dssp             HHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCC--------CGGGTTSEEEEECCTT-TC
T ss_pred             HHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--ccccc--------ccCCCCCeEEEecCCC-CC
Confidence            33333456789999999999999988774 44479999994 4444  22222        1123457999999987 33


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .     +  +||+|++..++||+  +.++...++++++++|+|||++++..
T Consensus       245 ~-----p--~~D~v~~~~vlh~~--~d~~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          245 V-----P--HADVHVLKRILHNW--GDEDSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             C-----C--CCSEEEEESCGGGS--CHHHHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             C-----C--CCcEEEEehhccCC--CHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            3     4  89999999999998  66667899999999999999998865

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.50  E-value=1.9e-13  Score=113.76  Aligned_cols=117  Identities=14%  Similarity=0.073  Sum_probs=83.4

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeC-ChhHHHHHHHHhccCccccccccCCC----CCeEEEeCcccccc-
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDI-AEGSIEDCRTRYNGDADHHQRRKKFS----FPARLICGDCYEVH-  155 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~-s~~~~~~a~~~~~~~~~~~~~~~~~~----~~v~~~~~d~~~~~-  155 (262)
                      ..++.+|||+|||+|.++..+++.+..+|+|+|+ |+.+++.|+++.......   ..+..    .++.+...+..+.. 
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~---~~~~~~~~~~~v~~~~~~~~~~~~  153 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTAN---SCSSETVKRASPKVVPYRWGDSPD  153 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC-------------CCCEEEECCTTSCTH
T ss_pred             hcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhh---hcccccCCCCCeEEEEecCCCccH
Confidence            3567899999999999988887766568999999 899999999987310000   01111    35777766644321 


Q ss_pred             -cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccC---C--CcEEEEEe
Q 024797          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR---P--GGTFIGTM  206 (262)
Q Consensus       156 -~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~---~--gG~li~~~  206 (262)
                       +.... +.++||+|++..+++|.    .+...+++.+.++|+   |  ||.+++..
T Consensus       154 ~~~~~~-~~~~fD~Ii~~dvl~~~----~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~  205 (281)
T 3bzb_A          154 SLQRCT-GLQRFQVVLLADLLSFH----QAHDALLRSVKMLLALPANDPTAVALVTF  205 (281)
T ss_dssp             HHHHHH-SCSSBSEEEEESCCSCG----GGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred             HHHhhc-cCCCCCEEEEeCcccCh----HHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence             10000 25789999998888876    678899999999999   9  99876654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.50  E-value=2.3e-14  Score=116.75  Aligned_cols=108  Identities=19%  Similarity=0.181  Sum_probs=84.1

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .++.+|||+|||+|..+..+++.  ..++|+++|+++.+++.|++++...        +...+++++++|+.+.... ..
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------g~~~~i~~~~gda~~~l~~-~~  129 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA--------KQEHKIKLRLGPALDTLHS-LL  129 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT--------TCTTTEEEEESCHHHHHHH-HH
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEEcCHHHHHHH-Hh
Confidence            46789999999999999988773  3568999999999999999988743        3345799999998664210 00


Q ss_pred             --CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                        ...++||+|++....       .....+++++.++|+|||++++..
T Consensus       130 ~~~~~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d~  170 (242)
T 3r3h_A          130 NEGGEHQFDFIFIDADK-------TNYLNYYELALKLVTPKGLIAIDN  170 (242)
T ss_dssp             HHHCSSCEEEEEEESCG-------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             hccCCCCEeEEEEcCCh-------HHhHHHHHHHHHhcCCCeEEEEEC
Confidence              014789999987653       345678999999999999999863

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.50  E-value=1.4e-13  Score=116.35  Aligned_cols=114  Identities=19%  Similarity=0.254  Sum_probs=85.9

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +...++.+|||+|||+|..+..++..  ..+.|+|+|+|+.+++.+++++...+.         .++.++++|+..++. 
T Consensus       114 l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~---------~~v~~~~~D~~~~~~-  183 (315)
T 1ixk_A          114 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---------LNVILFHSSSLHIGE-  183 (315)
T ss_dssp             HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---------CSEEEESSCGGGGGG-
T ss_pred             hCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC---------CeEEEEECChhhccc-
Confidence            34568889999999999999988764  346899999999999999998863221         258999999988754 


Q ss_pred             cccCCCCCeeEEEEccc------ccccCC-----CH-------HHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQFA------MHYSWS-----TE-------ARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~------l~~~~~-----~~-------~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                          ..++||+|++...      +.+..+     +.       ..+..++.++.++|||||.+++++.
T Consensus       184 ----~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stc  247 (315)
T 1ixk_A          184 ----LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC  247 (315)
T ss_dssp             ----GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ----ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence                3568999998532      221100     11       1236899999999999999999764

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.49  E-value=1.2e-13  Score=115.17  Aligned_cols=122  Identities=12%  Similarity=0.075  Sum_probs=87.5

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +..++..+...++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|+++....        +...+++++++|+.
T Consensus       112 v~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~--------~l~~~v~~~~~D~~  183 (284)
T 1nv8_A          112 VELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH--------GVSDRFFVRKGEFL  183 (284)
T ss_dssp             HHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT--------TCTTSEEEEESSTT
T ss_pred             HHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCceEEEECcch
Confidence            3344444433467899999999999999887664558999999999999999988632        22335999999987


Q ss_pred             ccccccccCCCCCe---eEEEEccccccc---------CCCH------HHHHHHHHHHH-hccCCCcEEEEEeCCh
Q 024797          153 EVHLDKVLADDAPF---DICSCQFAMHYS---------WSTE------ARARRALANVS-ALLRPGGTFIGTMPDA  209 (262)
Q Consensus       153 ~~~~~~~~~~~~~f---D~V~~~~~l~~~---------~~~~------~~~~~~l~~~~-~~L~~gG~li~~~~~~  209 (262)
                      +. .      .++|   |+|+++......         +.+.      .+...+++++. +.|+|||.+++.+...
T Consensus       184 ~~-~------~~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~~  252 (284)
T 1nv8_A          184 EP-F------KEKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGED  252 (284)
T ss_dssp             GG-G------GGGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCTT
T ss_pred             hh-c------ccccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECch
Confidence            73 2      2468   999997322100         0111      11236899999 9999999999987654

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.49  E-value=5e-14  Score=114.30  Aligned_cols=99  Identities=18%  Similarity=0.148  Sum_probs=77.6

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-----CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc---
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV---  154 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~---  154 (262)
                      .++.+|||||||+|..+..+++.     +.++|+|+|+|+.|++.|+..              ..+++++++|+.+.   
T Consensus        80 ~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~--------------~~~v~~~~gD~~~~~~l  145 (236)
T 2bm8_A           80 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD--------------MENITLHQGDCSDLTTF  145 (236)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG--------------CTTEEEEECCSSCSGGG
T ss_pred             cCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc--------------CCceEEEECcchhHHHH
Confidence            35689999999999999988764     356899999999998887621              23599999999874   


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHh-ccCCCcEEEEEe
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSA-LLRPGGTFIGTM  206 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~-~L~~gG~li~~~  206 (262)
                      +..    ...+||+|++...  |.     +...++.++.+ +|+|||++++..
T Consensus       146 ~~~----~~~~fD~I~~d~~--~~-----~~~~~l~~~~r~~LkpGG~lv~~d  187 (236)
T 2bm8_A          146 EHL----REMAHPLIFIDNA--HA-----NTFNIMKWAVDHLLEEGDYFIIED  187 (236)
T ss_dssp             GGG----SSSCSSEEEEESS--CS-----SHHHHHHHHHHHTCCTTCEEEECS
T ss_pred             Hhh----ccCCCCEEEECCc--hH-----hHHHHHHHHHHhhCCCCCEEEEEe
Confidence            321    2347999998765  22     35678999997 999999999964

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.49  E-value=1.4e-13  Score=114.33  Aligned_cols=113  Identities=17%  Similarity=0.191  Sum_probs=89.6

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc-C-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      ++..+...++.+|||+|||+|.++..+++. . ..+++++|+|+.+++.|++++...+        ...++.+.++|+.+
T Consensus       104 i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--------~~~~v~~~~~d~~~  175 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWG--------LIERVTIKVRDISE  175 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTT--------CGGGEEEECCCGGG
T ss_pred             HHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcC--------CCCCEEEEECCHHH
Confidence            444455678889999999999999988775 3 5689999999999999999876322        22468999999877


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      . +     ++++||+|++..         .++..++.++.++|+|||.+++.++..+.
T Consensus       176 ~-~-----~~~~~D~V~~~~---------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  218 (277)
T 1o54_A          176 G-F-----DEKDVDALFLDV---------PDPWNYIDKCWEALKGGGRFATVCPTTNQ  218 (277)
T ss_dssp             C-C-----SCCSEEEEEECC---------SCGGGTHHHHHHHEEEEEEEEEEESSHHH
T ss_pred             c-c-----cCCccCEEEECC---------cCHHHHHHHHHHHcCCCCEEEEEeCCHHH
Confidence            5 3     467899999843         23457889999999999999999987643

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.49  E-value=4.4e-13  Score=108.25  Aligned_cols=121  Identities=11%  Similarity=0.045  Sum_probs=91.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++...        ++..++++.++|+.+...    
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~--------gl~~~I~v~~gD~l~~~~----   86 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS--------GLTEQIDVRKGNGLAVIE----   86 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--------TCTTTEEEEECSGGGGCC----
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCceEEEEecchhhccC----
Confidence            4678899999999999999887754 457999999999999999998743        334569999999877542    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhhhcC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEG  221 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~  221 (262)
                       +..+||+|++.+..-      +....++....+.|+++|+||+.-.........+....+
T Consensus        87 -~~~~~D~IviagmGg------~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L~~~G  140 (244)
T 3gnl_A           87 -KKDAIDTIVIAGMGG------TLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNN  140 (244)
T ss_dssp             -GGGCCCEEEEEEECH------HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHHHHHT
T ss_pred             -ccccccEEEEeCCch------HHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHHHHCC
Confidence             233699998755332      457889999999999999999886544333333333334

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.49  E-value=1.5e-13  Score=108.49  Aligned_cols=107  Identities=18%  Similarity=0.174  Sum_probs=76.1

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-C--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-K--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ..++.+|||+|||+|.++..+++. +  ..+|+|+|+|+.+        .            ..++.++++|+.+.+...
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~--------~------------~~~v~~~~~d~~~~~~~~   79 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD--------P------------IPNVYFIQGEIGKDNMNN   79 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC--------C------------CTTCEEEECCTTTTSSCC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC--------C------------CCCceEEEccccchhhhh
Confidence            357789999999999999988764 3  4689999999831        1            124888999987765000


Q ss_pred             ------------------c--cCCCCCeeEEEEcccccccCCCHHH-------HHHHHHHHHhccCCCcEEEEEeCC
Q 024797          159 ------------------V--LADDAPFDICSCQFAMHYSWSTEAR-------ARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       159 ------------------~--~~~~~~fD~V~~~~~l~~~~~~~~~-------~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                                        .  ..++++||+|++..++++.-....+       ...++.++.++|+|||.+++.+..
T Consensus        80 ~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (201)
T 2plw_A           80 IKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYL  156 (201)
T ss_dssp             C-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             hccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeC
Confidence                              0  0145789999998877653100112       234889999999999999987754

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.48  E-value=4e-13  Score=107.46  Aligned_cols=121  Identities=10%  Similarity=0.043  Sum_probs=89.5

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+|||+|.++..++... ..+|+++|+++.+++.|++++...        ++..++++.++|..+.-.    
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~--------gl~~~i~~~~~d~l~~l~----   80 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH--------GLKEKIQVRLANGLAAFE----   80 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT--------TCTTTEEEEECSGGGGCC----
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCceEEEEECchhhhcc----
Confidence            4578899999999999999888754 557999999999999999998743        334569999999854211    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhhhcC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEG  221 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~  221 (262)
                       +..+||+|++.+.--      +....++....+.|+++|++++.-.........+....+
T Consensus        81 -~~~~~D~IviaG~Gg------~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L~~~G  134 (225)
T 3kr9_A           81 -ETDQVSVITIAGMGG------RLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHG  134 (225)
T ss_dssp             -GGGCCCEEEEEEECH------HHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHHHHTT
T ss_pred             -cCcCCCEEEEcCCCh------HHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHCC
Confidence             123699998755332      447889999999999999999876544333333333333

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.48  E-value=1.7e-13  Score=118.19  Aligned_cols=99  Identities=14%  Similarity=0.154  Sum_probs=82.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..+..+|||||||+|..+..+++. +..+++++|+ +.+++.|++.               .+++++.+|+.+ ++    
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~v~~~~~D~~~-~~----  257 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF---------------PGVTHVGGDMFK-EV----  257 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---------------TTEEEEECCTTT-CC----
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc---------------CCeEEEeCCcCC-CC----
Confidence            345689999999999999988764 4557999999 8787766532               359999999987 55    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                       +.+  |+|++..++|++  +.++..++|++++++|+|||++++..
T Consensus       258 -p~~--D~v~~~~vlh~~--~d~~~~~~L~~~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          258 -PSG--DTILMKWILHDW--SDQHCATLLKNCYDALPAHGKVVLVQ  298 (364)
T ss_dssp             -CCC--SEEEEESCGGGS--CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             -CCC--CEEEehHHhccC--CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence             443  999999999988  77788999999999999999998864

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.48  E-value=1.3e-13  Score=119.15  Aligned_cols=98  Identities=16%  Similarity=0.160  Sum_probs=81.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .+..+|||||||+|..+..+++. +..+++++|+ +.+++.+++.               .+++++.+|+.+ ++     
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~v~~~~~d~~~-~~-----  259 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF---------------SGVEHLGGDMFD-GV-----  259 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---------------TTEEEEECCTTT-CC-----
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc---------------CCCEEEecCCCC-CC-----
Confidence            45679999999999999988774 4557999999 8888766532               359999999986 54     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +.+  |+|++..++|++  +.++..++|++++++|+|||++++..
T Consensus       260 p~~--D~v~~~~vlh~~--~~~~~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          260 PKG--DAIFIKWICHDW--SDEHCLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             CCC--SEEEEESCGGGB--CHHHHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCC--CEEEEechhhcC--CHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence            433  999999999988  77778899999999999999998864

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.48  E-value=9.4e-14  Score=115.21  Aligned_cols=117  Identities=16%  Similarity=0.203  Sum_probs=85.6

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ...++.+|||+|||+|..+..++..  +.+.|+|+|+|+.+++.+++++...+.         .++.++++|+..++...
T Consensus        80 ~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~---------~~v~~~~~D~~~~~~~~  150 (274)
T 3ajd_A           80 NPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV---------LNTIIINADMRKYKDYL  150 (274)
T ss_dssp             CCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC---------CSEEEEESCHHHHHHHH
T ss_pred             CCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC---------CcEEEEeCChHhcchhh
Confidence            4567889999999999999988763  346899999999999999998864322         25999999987764310


Q ss_pred             ccCCCCCeeEEEEccccccc--CC-----CH-------HHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          159 VLADDAPFDICSCQFAMHYS--WS-----TE-------ARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~--~~-----~~-------~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      . ...++||+|++.......  +.     +.       ..+..++.++.++|+|||.+++++.
T Consensus       151 ~-~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          151 L-KNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             H-HTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             h-hccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence            0 015689999987322110  00     00       2347889999999999999999764

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.48  E-value=1.8e-13  Score=118.80  Aligned_cols=118  Identities=14%  Similarity=0.144  Sum_probs=88.7

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCC-CeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSF-PARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...        +... +++++++|+.+... ....
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n--------~~~~~~v~~~~~D~~~~l~-~~~~  281 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEAN--------HLDMANHQLVVMDVFDYFK-YARR  281 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHT--------TCCCTTEEEEESCHHHHHH-HHHH
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCccceEEEECCHHHHHH-HHHH
Confidence            467899999999999999988766668999999999999999988632        2233 69999999876321 0000


Q ss_pred             CCCCeeEEEEcccc-----cccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          162 DDAPFDICSCQFAM-----HYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       162 ~~~~fD~V~~~~~l-----~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ...+||+|++....     .+..........++..+.++|+|||.+++++...
T Consensus       282 ~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          282 HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             TTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             hCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            24589999986433     2232334667788999999999999999987543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.47  E-value=7.8e-14  Score=127.01  Aligned_cols=105  Identities=22%  Similarity=0.261  Sum_probs=81.0

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ..+.+|||||||+|.++..+++.+. .|+|||+|+.+++.|+.++.+.+         ..++++.++++.++...   .+
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~---------~~~~~~~~~~~~~~~~~---~~  131 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENP---------DFAAEFRVGRIEEVIAA---LE  131 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTST---------TSEEEEEECCHHHHHHH---CC
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcC---------CCceEEEECCHHHHhhh---cc
Confidence            4678999999999999998887655 89999999999999999876432         23589999999887320   14


Q ss_pred             CCCeeEEEEcccccccCCCHHHHH--HHHHHHHhccCCCcEEEE
Q 024797          163 DAPFDICSCQFAMHYSWSTEARAR--RALANVSALLRPGGTFIG  204 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~--~~l~~~~~~L~~gG~li~  204 (262)
                      +++||+|+|..+++|+    .++.  ..+..+.+.|+++|..++
T Consensus       132 ~~~fD~v~~~e~~ehv----~~~~~~~~~~~~~~tl~~~~~~~~  171 (569)
T 4azs_A          132 EGEFDLAIGLSVFHHI----VHLHGIDEVKRLLSRLADVTQAVI  171 (569)
T ss_dssp             TTSCSEEEEESCHHHH----HHHHCHHHHHHHHHHHHHHSSEEE
T ss_pred             CCCccEEEECcchhcC----CCHHHHHHHHHHHHHhccccceee
Confidence            6789999999999998    3333  334567777877776443

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.47  E-value=2e-13  Score=108.65  Aligned_cols=103  Identities=17%  Similarity=0.151  Sum_probs=81.3

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-C-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-ccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKV  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~  159 (262)
                      .++.+|||+|||+|..+..+++. + ..+|+++|+|+.+++.|++++...        +...+++++++|+.+. +.   
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~~---  123 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN--------GLIDRVELQVGDPLGIAAG---  123 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH--------SGGGGEEEEESCHHHHHTT---
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC--------CCCceEEEEEecHHHHhcc---
Confidence            46789999999999999888764 2 568999999999999999987632        2234589999998664 32   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                        .++ ||+|++....       .+...+++++.++|+|||.+++..
T Consensus       124 --~~~-fD~v~~~~~~-------~~~~~~l~~~~~~LkpgG~lv~~~  160 (210)
T 3c3p_A          124 --QRD-IDILFMDCDV-------FNGADVLERMNRCLAKNALLIAVN  160 (210)
T ss_dssp             --CCS-EEEEEEETTT-------SCHHHHHHHHGGGEEEEEEEEEES
T ss_pred             --CCC-CCEEEEcCCh-------hhhHHHHHHHHHhcCCCeEEEEEC
Confidence              245 9999987532       345788999999999999999854

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.47  E-value=1.4e-13  Score=119.15  Aligned_cols=97  Identities=18%  Similarity=0.189  Sum_probs=80.4

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++.               .+++++++|+.+ ++     
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~---------------~~v~~~~~d~~~-~~-----  265 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL---------------SGIEHVGGDMFA-SV-----  265 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC---------------TTEEEEECCTTT-CC-----
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc---------------CCCEEEeCCccc-CC-----
Confidence            45689999999999999988774 3457999999 8888776541               248999999977 54     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      +.  ||+|++..++||+  +.+....++++++++|+|||++++.
T Consensus       266 ~~--~D~v~~~~~lh~~--~d~~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          266 PQ--GDAMILKAVCHNW--SDEKCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             CC--EEEEEEESSGGGS--CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CC--CCEEEEecccccC--CHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            33  9999999999998  5566679999999999999999886

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.47  E-value=2.1e-13  Score=114.36  Aligned_cols=110  Identities=10%  Similarity=0.009  Sum_probs=82.8

Q ss_pred             CeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           86 DVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      .+|||||||+|.++..+++ .+..++++||+++.+++.|++++..         ....+++++++|+..+...   .+++
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~---------~~~~rv~v~~~Da~~~l~~---~~~~  158 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI---------PRAPRVKIRVDDARMVAES---FTPA  158 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC---------CCTTTEEEEESCHHHHHHT---CCTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc---------cCCCceEEEECcHHHHHhh---ccCC
Confidence            4999999999999999887 4555899999999999999998762         1245799999998765210   0357


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +||+|++....+......-....+++.++++|+|||++++...
T Consensus       159 ~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          159 SRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             CEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            8999998754332100000126799999999999999998775

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.47  E-value=1.4e-13  Score=114.54  Aligned_cols=118  Identities=15%  Similarity=0.128  Sum_probs=84.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccC--ccccccccCCCCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGD--ADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++.+|||+|||+|..+..+++.+..+++++|+++.+++.|++++ ..  +...........+++++++|+.+...   
T Consensus        73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~---  148 (281)
T 1mjf_A           73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIK---  148 (281)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHH---
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhc---
Confidence            3467899999999999999887765568999999999999999987 32  10000000013569999999866421   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHH--HHHHHHHHHhccCCCcEEEEEeC
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEAR--ARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~--~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                        .+++||+|++....+..  ....  ...+++.+.++|+|||.+++...
T Consensus       149 --~~~~fD~Ii~d~~~~~~--~~~~l~~~~~l~~~~~~L~pgG~lv~~~~  194 (281)
T 1mjf_A          149 --NNRGFDVIIADSTDPVG--PAKVLFSEEFYRYVYDALNNPGIYVTQAG  194 (281)
T ss_dssp             --HCCCEEEEEEECCCCC-------TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --ccCCeeEEEECCCCCCC--cchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence              14689999987654321  1122  26789999999999999998754

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.47  E-value=2.1e-13  Score=110.69  Aligned_cols=110  Identities=15%  Similarity=0.147  Sum_probs=83.7

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-c-cc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-H-LD  157 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~-~~  157 (262)
                      ..++.+|||+|||+|..+..+++..  ..+|+++|+++.+++.|++++...+        ...++.+.++|+.+. + +.
T Consensus        58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g--------~~~~v~~~~~d~~~~~~~~~  129 (239)
T 2hnk_A           58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENG--------LENKIFLKLGSALETLQVLI  129 (239)
T ss_dssp             HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTT--------CGGGEEEEESCHHHHHHHHH
T ss_pred             hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcC--------CCCCEEEEECCHHHHHHHHH
Confidence            4578899999999999999887752  5689999999999999999876322        223589999998652 1 10


Q ss_pred             --------cccCCC--CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          158 --------KVLADD--APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       158 --------~~~~~~--~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                              ...+++  ++||+|++.....       ....++.++.++|+|||++++..
T Consensus       130 ~~~~~~~~~~~f~~~~~~fD~I~~~~~~~-------~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          130 DSKSAPSWASDFAFGPSSIDLFFLDADKE-------NYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             HCSSCCGGGTTTCCSTTCEEEEEECSCGG-------GHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             hhcccccccccccCCCCCcCEEEEeCCHH-------HHHHHHHHHHHHcCCCeEEEEEc
Confidence                    000122  7899999886543       34678999999999999999975

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.46  E-value=6.9e-13  Score=114.69  Aligned_cols=121  Identities=15%  Similarity=0.159  Sum_probs=91.1

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+|||+|.++..++.... +.++|+|+|+.|++.|++++...        ++..++++.++|+.+++.    
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~--------gl~~~i~~~~~D~~~~~~----  282 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA--------GVLDKIKFIQGDATQLSQ----  282 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHT--------TCGGGCEEEECCGGGGGG----
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc--------CCCCceEEEECChhhCCc----
Confidence            56788999999999999998876443 48999999999999999998743        223469999999999876    


Q ss_pred             CCCCCeeEEEEcccccccCC---CHH-HHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHh
Q 024797          161 ADDAPFDICSCQFAMHYSWS---TEA-RARRALANVSALLRPGGTFIGTMPDANVIIKKLR  217 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~---~~~-~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~  217 (262)
                       ++++||+|+++..+...+.   ... ....+++++.++|  ||.+++.+++...+.+.+.
T Consensus       283 -~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~~~~~~  340 (373)
T 3tm4_A          283 -YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKAIEEAIA  340 (373)
T ss_dssp             -TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHHHHHHHH
T ss_pred             -ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHHHHH
Confidence             5689999999765432211   112 2377889999999  6777777788776655443

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.46  E-value=2e-13  Score=113.14  Aligned_cols=103  Identities=16%  Similarity=0.077  Sum_probs=84.1

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...+         ..++.++++|+.+.+     
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~---------l~~~~~~~~d~~~~~-----  182 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNK---------LNNVIPILADNRDVE-----  182 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTT---------CSSEEEEESCGGGCC-----
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCEEEEECChHHcC-----
Confidence            467889999999999999998875 45689999999999999999886322         235889999998763     


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                       ..++||+|++....        ....++.++.+.|+|||.+++++.
T Consensus       183 -~~~~~D~Vi~d~p~--------~~~~~l~~~~~~LkpgG~l~~s~~  220 (272)
T 3a27_A          183 -LKDVADRVIMGYVH--------KTHKFLDKTFEFLKDRGVIHYHET  220 (272)
T ss_dssp             -CTTCEEEEEECCCS--------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             -ccCCceEEEECCcc--------cHHHHHHHHHHHcCCCCEEEEEEc
Confidence             25689999987654        245688999999999999998764

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.46  E-value=2.2e-13  Score=111.28  Aligned_cols=109  Identities=12%  Similarity=0.039  Sum_probs=83.3

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-C-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-ccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKV  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~  159 (262)
                      .++.+|||+|||+|..+..+++. + .++++++|+|+.+++.|++++...        +...+++++++|+.+. +....
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~--------g~~~~i~~~~gda~~~l~~l~~  149 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA--------GVDHKIDFREGPALPVLDEMIK  149 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT--------TCGGGEEEEESCHHHHHHHHHH
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCCeEEEECCHHHHHHHHHh
Confidence            46789999999999999888764 2 568999999999999999988743        2234699999998654 21000


Q ss_pred             c-CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          160 L-ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       160 ~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      . .+.++||+|++....       .+...+++++.++|+|||++++..
T Consensus       150 ~~~~~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpGG~lv~d~  190 (247)
T 1sui_A          150 DEKNHGSYDFIFVDADK-------DNYLNYHKRLIDLVKVGGVIGYDN  190 (247)
T ss_dssp             SGGGTTCBSEEEECSCS-------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred             ccCCCCCEEEEEEcCch-------HHHHHHHHHHHHhCCCCeEEEEec
Confidence            0 014789999987643       345788999999999999999864

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.45  E-value=5.1e-14  Score=116.02  Aligned_cols=114  Identities=12%  Similarity=0.063  Sum_probs=78.0

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEE--eCcccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI--CGDCYE  153 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~--~~d~~~  153 (262)
                      ++......++.+|||+|||+|.++..+++.  ++|+|+|+++ |+..+++...    .   ......++.++  ++|+..
T Consensus        66 i~~~~~~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~----~---~~~~~~~v~~~~~~~D~~~  135 (265)
T 2oxt_A           66 MEERGYVELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPR----I---TESYGWNIVKFKSRVDIHT  135 (265)
T ss_dssp             HHHHTSCCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCC----C---CCBTTGGGEEEECSCCTTT
T ss_pred             HHHcCCCCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhh----h---hhccCCCeEEEecccCHhH
Confidence            333333467889999999999999888765  6899999998 5332221100    0   01112368889  999987


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCH-HH-H--HHHHHHHHhccCCCc--EEEEEeCC
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTE-AR-A--RRALANVSALLRPGG--TFIGTMPD  208 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~-~~-~--~~~l~~~~~~L~~gG--~li~~~~~  208 (262)
                      ++       +++||+|+|..+ ++. ... .+ .  ..++..+.++|+|||  .+++.+..
T Consensus       136 l~-------~~~fD~V~sd~~-~~~-~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          136 LP-------VERTDVIMCDVG-ESS-PKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             SC-------CCCCSEEEECCC-CCC-SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             CC-------CCCCcEEEEeCc-ccC-CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            53       578999999877 432 111 11 1  138899999999999  99987743

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.45  E-value=2.8e-13  Score=112.32  Aligned_cols=117  Identities=15%  Similarity=0.135  Sum_probs=85.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..+.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++...+.     .....+++++++|+...-..    
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~-----~~~~~rv~v~~~D~~~~l~~----  144 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAG-----KLDDPRVDVQVDDGFMHIAK----  144 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHT-----TTTSTTEEEEESCSHHHHHT----
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcc-----ccCCCceEEEECcHHHHHhh----
Confidence            45789999999999999988775 456899999999999999998742100     00135799999998764211    


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .+++||+|++....+......-....+++.+.++|+|||.+++...+
T Consensus       145 ~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~~~  191 (275)
T 1iy9_A          145 SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDN  191 (275)
T ss_dssp             CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCC
T ss_pred             CCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence            35789999997644321000001257899999999999999998754

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.45  E-value=5e-14  Score=116.69  Aligned_cols=109  Identities=13%  Similarity=0.091  Sum_probs=75.8

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEE--eCcccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI--CGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~--~~d~~~~~~~~~  159 (262)
                      ..++.+|||+|||+|.++..+++.  ++|+|+|+|+ |+..+++...    .   ......++.++  ++|+..++    
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~----~---~~~~~~~v~~~~~~~D~~~l~----  145 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPR----L---VETFGWNLITFKSKVDVTKME----  145 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCC----C---CCCTTGGGEEEECSCCGGGCC----
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchh----h---hhhcCCCeEEEeccCcHhhCC----
Confidence            457889999999999999888765  6899999999 6433322110    0   01122368899  99988753    


Q ss_pred             cCCCCCeeEEEEcccccccCCCH-HHH--HHHHHHHHhccCCCc--EEEEEeCC
Q 024797          160 LADDAPFDICSCQFAMHYSWSTE-ARA--RRALANVSALLRPGG--TFIGTMPD  208 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~-~~~--~~~l~~~~~~L~~gG--~li~~~~~  208 (262)
                         +++||+|++..+ ++..... +..  ..++..+.++|+|||  .+++.+..
T Consensus       146 ---~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          146 ---PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             ---CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             ---CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence               578999999877 4321111 111  137899999999999  99887643

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.45  E-value=3.4e-13  Score=112.31  Aligned_cols=116  Identities=13%  Similarity=0.117  Sum_probs=86.5

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++...+..     ....+++++++|+.+....   
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~-----~~~~~v~~~~~D~~~~l~~---  147 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCG-----YEDKRVNVFIEDASKFLEN---  147 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGG-----GGSTTEEEEESCHHHHHHH---
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccc-----cCCCcEEEEECChHHHHHh---
Confidence            346789999999999999988765 3568999999999999999987632100     0135699999998764211   


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHH--HHHHHHHHhccCCCcEEEEEeCC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARA--RRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~--~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                       ..++||+|++....++.  .....  ..+++.+.++|+|||.+++...+
T Consensus       148 -~~~~fD~Ii~d~~~~~~--~~~~l~~~~~l~~~~~~L~pgG~lv~~~~~  194 (283)
T 2i7c_A          148 -VTNTYDVIIVDSSDPIG--PAETLFNQNFYEKIYNALKPNGYCVAQCES  194 (283)
T ss_dssp             -CCSCEEEEEEECCCTTT--GGGGGSSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             -CCCCceEEEEcCCCCCC--cchhhhHHHHHHHHHHhcCCCcEEEEECCC
Confidence             35789999996644322  11222  68999999999999999998654

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.45  E-value=3.2e-13  Score=115.94  Aligned_cols=99  Identities=13%  Similarity=0.109  Sum_probs=81.5

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+|||+|.++..+++. +..+++++|+ +.+++.|++.               .+++++++|+.+ ++    
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~v~~~~~d~~~-~~----  244 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS---------------NNLTYVGGDMFT-SI----  244 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB---------------TTEEEEECCTTT-CC----
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC---------------CCcEEEeccccC-CC----
Confidence            346689999999999999988764 4458999999 9898877541               138999999876 44    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCC---CcEEEEEe
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP---GGTFIGTM  206 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~---gG~li~~~  206 (262)
                       +  .||+|++.+++||+  +.+....++++++++|+|   ||++++..
T Consensus       245 -p--~~D~v~~~~~lh~~--~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          245 -P--NADAVLLKYILHNW--TDKDCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             -C--CCSEEEEESCGGGS--CHHHHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             -C--CccEEEeehhhccC--CHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence             3  39999999999998  556667999999999999   99998864

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.45  E-value=1.3e-12  Score=112.28  Aligned_cols=106  Identities=14%  Similarity=0.112  Sum_probs=87.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..+..+|||||||+|.++..+++. +..+++..|+ +.+++.|++....         ....+|+++.+|+...+.    
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~---------~~~~rv~~~~gD~~~~~~----  242 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSF---------QEEEQIDFQEGDFFKDPL----  242 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC-----------CCSEEEEESCTTTSCC----
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhh---------cccCceeeecCccccCCC----
Confidence            345679999999999999998874 4557889997 7899999988752         224679999999876543    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                         ..+|+|++..++|++  +.++..++|+++++.|+|||.+++..
T Consensus       243 ---~~~D~~~~~~vlh~~--~d~~~~~iL~~~~~al~pgg~lli~e  283 (353)
T 4a6d_A          243 ---PEADLYILARVLHDW--ADGKCSHLLERIYHTCKPGGGILVIE  283 (353)
T ss_dssp             ---CCCSEEEEESSGGGS--CHHHHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             ---CCceEEEeeeecccC--CHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence               357999999999988  77788999999999999999988764

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.44  E-value=7.3e-13  Score=123.01  Aligned_cols=113  Identities=17%  Similarity=0.224  Sum_probs=89.6

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-CCeEEEeCccccc-cccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICGDCYEV-HLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~d~~~~-~~~~~~  160 (262)
                      .++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...        ++. .+++++++|+.+. +.    
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~n--------gl~~~~v~~i~~D~~~~l~~----  605 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLN--------GLTGRAHRLIQADCLAWLRE----  605 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT--------TCCSTTEEEEESCHHHHHHH----
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--------CCCccceEEEecCHHHHHHh----
Confidence            468899999999999999888777778999999999999999998732        223 4699999999874 22    


Q ss_pred             CCCCCeeEEEEccccc-------ccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          161 ADDAPFDICSCQFAMH-------YSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~-------~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                       ..++||+|++.....       ..+....+...++..+.++|+|||.|++++..
T Consensus       606 -~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          606 -ANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             -CCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             -cCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence             357899999865321       11223467888999999999999999998765

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.44  E-value=4e-13  Score=114.21  Aligned_cols=115  Identities=18%  Similarity=0.204  Sum_probs=83.6

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCC-CCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .++.+|||||||+|..+..+++. +..+|+++|+|+.+++.|++++...+      .++ ..+++++++|+.+....   
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~------~gl~~~rv~~~~~D~~~~l~~---  189 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA------IGYEDPRVNLVIGDGVAFLKN---  189 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH------GGGGSTTEEEEESCHHHHHHT---
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc------cccCCCcEEEEECCHHHHHHh---
Confidence            46789999999999999988775 34689999999999999999875210      011 34699999998764210   


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .++++||+|++................+++.+.++|+|||.+++..
T Consensus       190 ~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  235 (334)
T 1xj5_A          190 AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  235 (334)
T ss_dssp             SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence            0357899999876422110010113689999999999999999974

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.44  E-value=4.1e-13  Score=112.87  Aligned_cols=115  Identities=19%  Similarity=0.169  Sum_probs=82.8

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCC-CCCeEEEeCccccc-cccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEV-HLDK  158 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~-~~~~  158 (262)
                      ..++.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++....      ..+ ..+++++++|+.+. +.  
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~------~~~~~~rv~v~~~Da~~~l~~--  164 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA------IGYSSSKLTLHVGDGFEFMKQ--  164 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH------GGGGCTTEEEEESCHHHHHHT--
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhh------cccCCCcEEEEECcHHHHHhh--
Confidence            346789999999999999998775 35689999999999999999875210      011 35699999998763 22  


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                         .+++||+|++....+...........+++++.++|+|||.+++...
T Consensus       165 ---~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~  210 (304)
T 2o07_A          165 ---NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGE  210 (304)
T ss_dssp             ---CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ---CCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEecC
Confidence               3578999998765432100001235789999999999999998763

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.44  E-value=5.3e-13  Score=112.54  Aligned_cols=115  Identities=18%  Similarity=0.184  Sum_probs=82.4

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCC-CCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++.+|||+|||+|..+..+++. +..+|+++|+++.+++.|++++...+      .++ ..+++++++|+......  
T Consensus       106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~------~~~~~~rv~~~~~D~~~~l~~--  177 (314)
T 2b2c_A          106 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS------CGFSHPKLDLFCGDGFEFLKN--  177 (314)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTS------GGGGCTTEEEECSCHHHHHHH--
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhc------cccCCCCEEEEEChHHHHHHh--
Confidence            345689999999999999988775 35689999999999999999876321      011 35699999998764211  


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHH--HHHHHHHHhccCCCcEEEEEeCC
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARA--RRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~--~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                        .+++||+|++....+ . .+....  ..+++.+.++|+|||.+++...+
T Consensus       178 --~~~~fD~Ii~d~~~~-~-~~~~~l~t~~~l~~~~~~LkpgG~lv~~~~~  224 (314)
T 2b2c_A          178 --HKNEFDVIITDSSDP-V-GPAESLFGQSYYELLRDALKEDGILSSQGES  224 (314)
T ss_dssp             --CTTCEEEEEECCC---------------HHHHHHHHEEEEEEEEEECCC
T ss_pred             --cCCCceEEEEcCCCC-C-CcchhhhHHHHHHHHHhhcCCCeEEEEECCC
Confidence              357899999866432 2 111111  68999999999999999998643

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.43  E-value=3.5e-13  Score=113.82  Aligned_cols=114  Identities=18%  Similarity=0.143  Sum_probs=85.3

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccC-C-CCCeEEEeCccccc-ccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-F-SFPARLICGDCYEV-HLD  157 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~-~~~v~~~~~d~~~~-~~~  157 (262)
                      ..++.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++...+      .+ . ..+++++++|+.+. +. 
T Consensus        75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~------~~~~~~~~v~~~~~D~~~~l~~-  147 (314)
T 1uir_A           75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWH------QGAFDDPRAVLVIDDARAYLER-  147 (314)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHH------TTGGGCTTEEEEESCHHHHHHH-
T ss_pred             CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhc------cccccCCceEEEEchHHHHHHh-
Confidence            356689999999999999988775 35689999999999999999875210      00 1 34699999998764 22 


Q ss_pred             cccCCCCCeeEEEEcccccccC-CCHHH--HHHHHHHHHhccCCCcEEEEEe
Q 024797          158 KVLADDAPFDICSCQFAMHYSW-STEAR--ARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~-~~~~~--~~~~l~~~~~~L~~gG~li~~~  206 (262)
                          .+++||+|++....+... .+...  ...+++.+.++|+|||.+++..
T Consensus       148 ----~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          148 ----TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             ----CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ----cCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence                367899999987654300 01111  3688999999999999999875

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.43  E-value=9.3e-13  Score=108.79  Aligned_cols=102  Identities=10%  Similarity=0.041  Sum_probs=83.5

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..++..+..+|+++|+++.+++.+++++..        +++..+++++++|+.++.      
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~--------N~v~~~v~~~~~D~~~~~------  188 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL--------NKVEDRMSAYNMDNRDFP------  188 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHH--------TTCTTTEEEECSCTTTCC------
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHH--------cCCCCcEEEEeCcHHHhc------
Confidence            368999999999999999998877767899999999999999999873        344567999999998875      


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ..+.||.|+++....        ...++..+.+.|++||++.+.
T Consensus       189 ~~~~~D~Vi~~~p~~--------~~~~l~~a~~~lk~gG~ih~~  224 (278)
T 3k6r_A          189 GENIADRILMGYVVR--------THEFIPKALSIAKDGAIIHYH  224 (278)
T ss_dssp             CCSCEEEEEECCCSS--------GGGGHHHHHHHEEEEEEEEEE
T ss_pred             cccCCCEEEECCCCc--------HHHHHHHHHHHcCCCCEEEEE
Confidence            467899998764221        235677888999999998653

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.43  E-value=5.6e-13  Score=112.85  Aligned_cols=115  Identities=13%  Similarity=0.152  Sum_probs=85.3

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCC-CCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++.+|||+|||+|..+..+++. +..+++++|+|+.+++.|++++....      ... ..+++++++|+.+....  
T Consensus       114 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~------~~~~~~~v~~~~~D~~~~l~~--  185 (321)
T 2pt6_A          114 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNIS------CGYEDKRVNVFIEDASKFLEN--  185 (321)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS------GGGGSTTEEEEESCHHHHHHH--
T ss_pred             CCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc------cccCCCcEEEEEccHHHHHhh--
Confidence            346689999999999999988775 45689999999999999999876310      011 34699999998764211  


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHH--HHHHHHHHhccCCCcEEEEEeCC
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARA--RRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~--~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                        .+++||+|++...-...  .....  ..+++++.++|+|||.+++...+
T Consensus       186 --~~~~fDvIi~d~~~p~~--~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  232 (321)
T 2pt6_A          186 --VTNTYDVIIVDSSDPIG--PAETLFNQNFYEKIYNALKPNGYCVAQCES  232 (321)
T ss_dssp             --CCSCEEEEEEECCCSSS--GGGGGSSHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             --cCCCceEEEECCcCCCC--cchhhhHHHHHHHHHHhcCCCcEEEEEcCC
Confidence              35789999987532211  11111  68999999999999999997654

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.43  E-value=8.2e-13  Score=113.06  Aligned_cols=129  Identities=16%  Similarity=0.173  Sum_probs=92.7

Q ss_pred             ccchhHHHHHHHHHHHH-hccCCCeEEEecCCCCcchHHHHhcCC------CeEEEEeCChhHHHHHHHHhccCcccccc
Q 024797           64 IHLKKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKAKI------GYYVGIDIAEGSIEDCRTRYNGDADHHQR  136 (262)
Q Consensus        64 ~~~~~~~~~~~~~l~~~-~~~~~~~vLDiGcG~G~~~~~l~~~~~------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~  136 (262)
                      +..+.+...+..++..+ ...++.+|||+|||+|.++..+++...      ..++|+|+++.+++.|+.++...      
T Consensus       109 ~TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~------  182 (344)
T 2f8l_A          109 MTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ------  182 (344)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH------
T ss_pred             CChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC------
Confidence            34455555545555443 233567999999999999888765321      57999999999999999987521      


Q ss_pred             ccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHH---------------HHHHHHHHHhccCCCcE
Q 024797          137 RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR---------------ARRALANVSALLRPGGT  201 (262)
Q Consensus       137 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~---------------~~~~l~~~~~~L~~gG~  201 (262)
                          +.++.+.++|.....      ..++||+|+++..+.++ ...+.               ...++.++.+.|+|||+
T Consensus       183 ----g~~~~i~~~D~l~~~------~~~~fD~Ii~NPPfg~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~  251 (344)
T 2f8l_A          183 ----RQKMTLLHQDGLANL------LVDPVDVVISDLPVGYY-PDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGY  251 (344)
T ss_dssp             ----TCCCEEEESCTTSCC------CCCCEEEEEEECCCSEE-SCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEE
T ss_pred             ----CCCceEEECCCCCcc------ccCCccEEEECCCCCCc-CchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCE
Confidence                124789999976632      35789999999877654 22211               13689999999999999


Q ss_pred             EEEEeCCh
Q 024797          202 FIGTMPDA  209 (262)
Q Consensus       202 li~~~~~~  209 (262)
                      +++.+|+.
T Consensus       252 ~~~v~p~~  259 (344)
T 2f8l_A          252 LFFLVPDA  259 (344)
T ss_dssp             EEEEEEGG
T ss_pred             EEEEECch
Confidence            99988643

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.43  E-value=7.6e-13  Score=107.00  Aligned_cols=108  Identities=14%  Similarity=0.101  Sum_probs=82.3

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .++.+|||+|||+|..+..++...  .++++++|+++.+++.|++++...        +...+++++++|+.+... ...
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------g~~~~i~~~~~d~~~~l~-~l~  141 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA--------GVAEKISLRLGPALATLE-QLT  141 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH--------TCGGGEEEEESCHHHHHH-HHH
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEEcCHHHHHH-HHH
Confidence            467899999999999998887642  458999999999999999987632        223458999999754211 010


Q ss_pred             CCC--CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 ADD--APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 ~~~--~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ..+  ++||+|++....       .+...++.++.++|+|||.+++..
T Consensus       142 ~~~~~~~fD~V~~d~~~-------~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          142 QGKPLPEFDLIFIDADK-------RNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             TSSSCCCEEEEEECSCG-------GGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             hcCCCCCcCEEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEeC
Confidence            022  789999987653       345778999999999999999864

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.42  E-value=5e-13  Score=111.99  Aligned_cols=114  Identities=17%  Similarity=0.140  Sum_probs=82.9

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCC-CCCeEEEeCccccc-ccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEV-HLDKV  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~-~~~~~  159 (262)
                      ..+.+|||+|||+|..+..+++. +..+|+++|+|+.+++.|++++...+      ... ..+++++++|+... +.   
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~------~~~~~~~v~~~~~D~~~~l~~---  159 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS------CGFDDPRAEIVIANGAEYVRK---  159 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH------GGGGCTTEEEEESCHHHHGGG---
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhc------cccCCCceEEEECcHHHHHhh---
Confidence            45689999999999999998875 45689999999999999999874210      011 34699999998764 22   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHH--HHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEA--RARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~--~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                        .+++||+|++.....+. ....  ....+++.+.++|+|||.+++.+.+
T Consensus       160 --~~~~fD~Ii~d~~~~~~-~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~  207 (296)
T 1inl_A          160 --FKNEFDVIIIDSTDPTA-GQGGHLFTEEFYQACYDALKEDGVFSAETED  207 (296)
T ss_dssp             --CSSCEEEEEEEC-----------CCSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             --CCCCceEEEEcCCCccc-CchhhhhHHHHHHHHHHhcCCCcEEEEEccC
Confidence              35789999986432211 0111  1268899999999999999998655

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.42  E-value=7.8e-14  Score=114.25  Aligned_cols=108  Identities=9%  Similarity=0.150  Sum_probs=72.3

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc---ccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV---HLDKV  159 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~---~~~~~  159 (262)
                      ++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|++++...        +...+++++++|+.+.   ++   
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~~~~~~~---  133 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN--------NLSDLIKVVKVPQKTLLMDAL---  133 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT--------TCTTTEEEEECCTTCSSTTTS---
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHc--------CCCccEEEEEcchhhhhhhhh---
Confidence            5679999999999988887764 3468999999999999999988632        2234599999997652   22   


Q ss_pred             cCC---CCCeeEEEEcccccccCCC-----------HHHHHHHHHHHHhccCCCcEEEE
Q 024797          160 LAD---DAPFDICSCQFAMHYSWST-----------EARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       160 ~~~---~~~fD~V~~~~~l~~~~~~-----------~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                        +   +++||+|+++..+++....           .+....++.++.++|+|||.+.+
T Consensus       134 --~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~  190 (254)
T 2h00_A          134 --KEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEF  190 (254)
T ss_dssp             --TTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHH
T ss_pred             --hcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEE
Confidence              2   2689999998655433100           01123456677777888777654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.42  E-value=9.6e-13  Score=103.24  Aligned_cols=107  Identities=18%  Similarity=0.187  Sum_probs=75.9

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc-
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL-  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-  160 (262)
                      ..++.+|||+|||+|.++..+++. .+.|+|+|+++..        .            ..++.++++|+.+.+..... 
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~--------~------------~~~v~~~~~D~~~~~~~~~~~   81 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME--------E------------IAGVRFIRCDIFKETIFDDID   81 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC--------C------------CTTCEEEECCTTSSSHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc--------c------------CCCeEEEEccccCHHHHHHHH
Confidence            357889999999999999988766 6689999999841        1            23589999999875421100 


Q ss_pred             --CC---CCCeeEEEEcccccccC-------CCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          161 --AD---DAPFDICSCQFAMHYSW-------STEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       161 --~~---~~~fD~V~~~~~l~~~~-------~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                        ..   .++||+|+++.......       ........++..+.++|+|||.|++.+...
T Consensus        82 ~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~  142 (191)
T 3dou_A           82 RALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQG  142 (191)
T ss_dssp             HHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred             HHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCC
Confidence              01   14899999976432110       011234678899999999999999877543

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.42  E-value=7.3e-13  Score=107.48  Aligned_cols=109  Identities=11%  Similarity=0.050  Sum_probs=83.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-C-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .++.+|||+|||+|..+..+++. + .++++++|+++.+++.|++++...        +...+++++++|+.+.......
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------g~~~~i~~~~gda~~~l~~l~~  140 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA--------GVEHKINFIESDAMLALDNLLQ  140 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT--------TCGGGEEEEESCHHHHHHHHHH
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEEcCHHHHHHHHHh
Confidence            46789999999999999988774 2 568999999999999999988743        2234699999998654110000


Q ss_pred             --CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 --ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 --~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                        .+.++||+|++....       .....+++.+.++|+|||++++..
T Consensus       141 ~~~~~~~fD~I~~d~~~-------~~~~~~l~~~~~~L~pGG~lv~d~  181 (237)
T 3c3y_A          141 GQESEGSYDFGFVDADK-------PNYIKYHERLMKLVKVGGIVAYDN  181 (237)
T ss_dssp             STTCTTCEEEEEECSCG-------GGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccCCCCCcCEEEECCch-------HHHHHHHHHHHHhcCCCeEEEEec
Confidence              014789999987532       346788999999999999999864

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.41  E-value=8.5e-13  Score=106.23  Aligned_cols=109  Identities=19%  Similarity=0.163  Sum_probs=83.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-C-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-K-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++...        +...+++++++|+.+... ..
T Consensus        67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------g~~~~i~~~~~d~~~~~~-~~  137 (229)
T 2avd_A           67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA--------EAEHKIDLRLKPALETLD-EL  137 (229)
T ss_dssp             HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT--------TCTTTEEEEESCHHHHHH-HH
T ss_pred             hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC--------CCCCeEEEEEcCHHHHHH-HH
Confidence            356789999999999999888764 2 568999999999999999987632        223569999999865411 00


Q ss_pred             cCC--CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          160 LAD--DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       160 ~~~--~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ...  .++||+|++....       .....+++++.++|+|||.+++..
T Consensus       138 ~~~~~~~~~D~v~~d~~~-------~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          138 LAAGEAGTFDVAVVDADK-------ENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             HHTTCTTCEEEEEECSCS-------TTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             HhcCCCCCccEEEECCCH-------HHHHHHHHHHHHHcCCCeEEEEEC
Confidence            001  1689999987643       335678999999999999999864

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.41  E-value=1.5e-12  Score=113.45  Aligned_cols=117  Identities=14%  Similarity=0.098  Sum_probs=87.9

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCC-CCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...        +. ..+++++++|+.+.... ...
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~n--------gl~~~~v~~~~~D~~~~~~~-~~~  289 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELN--------KLDLSKAEFVRDDVFKLLRT-YRD  289 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT--------TCCGGGEEEEESCHHHHHHH-HHH
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--------CCCccceEEEECCHHHHHHH-HHh
Confidence            578899999999999999998766668999999999999999988632        22 22689999998775320 000


Q ss_pred             CCCCeeEEEEccccc-----ccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMH-----YSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~-----~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ...+||+|++.....     ++.........++.++.+.|+|||.+++++..
T Consensus       290 ~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  341 (396)
T 3c0k_A          290 RGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCS  341 (396)
T ss_dssp             TTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence            146899999874221     11112256788999999999999999988754

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.41  E-value=9.8e-13  Score=103.22  Aligned_cols=108  Identities=19%  Similarity=0.177  Sum_probs=75.6

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CC---------CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEE-eCc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KI---------GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI-CGD  150 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~---------~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~-~~d  150 (262)
                      ..++.+|||+|||+|.++..+++. +.         .+|+|+|+|+.+        .            ..++.++ ++|
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~--------~------------~~~~~~~~~~d   79 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF--------P------------LEGATFLCPAD   79 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC--------C------------CTTCEEECSCC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc--------c------------CCCCeEEEecc
Confidence            357889999999999999988775 32         689999999832        0            1247788 888


Q ss_pred             ccccccccc---cCCCCCeeEEEEcccccccCCCHHHH-------HHHHHHHHhccCCCcEEEEEeCCh
Q 024797          151 CYEVHLDKV---LADDAPFDICSCQFAMHYSWSTEARA-------RRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       151 ~~~~~~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~~-------~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      +...+....   ..++++||+|++...++.......+.       ..++.++.++|+|||.+++.+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  148 (196)
T 2nyu_A           80 VTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAG  148 (196)
T ss_dssp             TTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCS
T ss_pred             CCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence            766432100   01346899999976554321111222       578999999999999999987643

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.40  E-value=7.8e-13  Score=115.33  Aligned_cols=118  Identities=19%  Similarity=0.169  Sum_probs=88.1

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.+++.|++++...        +...+++++++|+.+.... ....
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n--------~~~~~v~~~~~d~~~~~~~-~~~~  286 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLN--------GVEDRMKFIVGSAFEEMEK-LQKK  286 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT--------TCGGGEEEEESCHHHHHHH-HHHT
T ss_pred             hCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc--------CCCccceEEECCHHHHHHH-HHhh
Confidence            378899999999999999998766668999999999999999988632        2223699999998765320 0002


Q ss_pred             CCCeeEEEEcccccc-----cCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          163 DAPFDICSCQFAMHY-----SWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~-----~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      .++||+|++......     +.........++.++.++|+|||.+++++.+.
T Consensus       287 ~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          287 GEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             TCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            568999998643211     00112567889999999999999998887643

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.40  E-value=1.1e-12  Score=109.39  Aligned_cols=113  Identities=20%  Similarity=0.337  Sum_probs=82.9

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      .+..++..+...++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.++++....+        ...+++++++|+
T Consensus        16 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~-~~v~~vD~~~~~~~~a~~~~~~~~--------~~~~v~~~~~D~   86 (285)
T 1zq9_A           16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGTP--------VASKLQVLVGDV   86 (285)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTST--------TGGGEEEEESCT
T ss_pred             HHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhC-CEEEEEECCHHHHHHHHHHHHhcC--------CCCceEEEEcce
Confidence            34556666666788899999999999999988754 489999999999999999875321        124699999999


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHH--------------HH--HhccCCCcEEE
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA--------------NV--SALLRPGGTFI  203 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~--------------~~--~~~L~~gG~li  203 (262)
                      ...++       ..||+|+++..++..   .+....++.              ++  +++|+|||.++
T Consensus        87 ~~~~~-------~~fD~vv~nlpy~~~---~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           87 LKTDL-------PFFDTCVANLPYQIS---SPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             TTSCC-------CCCSEEEEECCGGGH---HHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             ecccc-------hhhcEEEEecCcccc---hHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            88764       379999997766542   222223332              22  36899999874

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.39  E-value=3.4e-13  Score=113.28  Aligned_cols=107  Identities=21%  Similarity=0.181  Sum_probs=74.2

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeC----ChhHHHHHHHHhccCccccccccCCCCCeEEEeC-ccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDI----AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHL  156 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~----s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~  156 (262)
                      ..++.+|||+|||+|.++..+++.  +.|+|+|+    ++.+++.+.  ...         ....++.++++ |+..++ 
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~---------~~~~~v~~~~~~D~~~l~-  145 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MST---------YGWNLVRLQSGVDVFFIP-  145 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCS---------TTGGGEEEECSCCTTTSC-
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhh---------cCCCCeEEEeccccccCC-
Confidence            457789999999999999988765  58999999    554432110  010         00135889998 887653 


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHH---HHHHHHHHhccCCCcEEEEEeCCh
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARA---RRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~---~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                            .++||+|+|..+.+ ......+.   ..+|..+.++|+|||.|++.+...
T Consensus       146 ------~~~fD~V~sd~~~~-~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~  194 (305)
T 2p41_A          146 ------PERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP  194 (305)
T ss_dssp             ------CCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred             ------cCCCCEEEECCccc-cCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence                  46899999987653 10001121   257899999999999999987654

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.39  E-value=1.4e-12  Score=105.48  Aligned_cols=111  Identities=11%  Similarity=0.100  Sum_probs=72.9

Q ss_pred             HHHHHHHHhcc-CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEE-eCc
Q 024797           73 IKSVLVQLYAR-RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI-CGD  150 (262)
Q Consensus        73 ~~~~l~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~-~~d  150 (262)
                      +...+..+... ++.+|||+|||+|.++..+++.+..+|+|+|+|+.|++.|+++...              +... ..+
T Consensus        25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~--------------~~~~~~~~   90 (232)
T 3opn_A           25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER--------------VVVMEQFN   90 (232)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT--------------EEEECSCC
T ss_pred             HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc--------------ccccccce
Confidence            33445444433 4669999999999999988877656899999999999998775431              1111 111


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +........  +...||.+.+..++.++       ..++.+++++|+|||.+++.+
T Consensus        91 ~~~~~~~~~--~~~~~d~~~~D~v~~~l-------~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A           91 FRNAVLADF--EQGRPSFTSIDVSFISL-------DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             GGGCCGGGC--CSCCCSEEEECCSSSCG-------GGTHHHHHHHSCTTCEEEEEE
T ss_pred             EEEeCHhHc--CcCCCCEEEEEEEhhhH-------HHHHHHHHHhccCCCEEEEEE
Confidence            111110000  12235666665555443       678999999999999998864

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.38  E-value=2.7e-12  Score=113.61  Aligned_cols=115  Identities=17%  Similarity=0.181  Sum_probs=85.3

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +...++.+|||+|||+|..+..++..  ..+.++++|+|+.+++.+++++...+.         .++.++++|+..++..
T Consensus       255 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~---------~~v~~~~~D~~~~~~~  325 (450)
T 2yxl_A          255 LDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI---------KIVKPLVKDARKAPEI  325 (450)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC---------CSEEEECSCTTCCSSS
T ss_pred             cCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC---------CcEEEEEcChhhcchh
Confidence            34568889999999999999988763  236899999999999999998864322         2589999998876510


Q ss_pred             cccCCCCCeeEEEEc------ccccccCCCH-------------HHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQ------FAMHYSWSTE-------------ARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~------~~l~~~~~~~-------------~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                         .++++||+|++.      +++.+. +..             ..+..++.++.++|+|||.+++++.
T Consensus       326 ---~~~~~fD~Vl~D~Pcsg~g~~~~~-pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tc  390 (450)
T 2yxl_A          326 ---IGEEVADKVLLDAPCTSSGTIGKN-PELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTC  390 (450)
T ss_dssp             ---SCSSCEEEEEEECCCCCGGGTTTS-TTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             ---hccCCCCEEEEcCCCCCCeeeccC-hhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence               134789999973      222221 110             1126789999999999999998764

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.38  E-value=3.8e-12  Score=110.09  Aligned_cols=106  Identities=11%  Similarity=-0.047  Sum_probs=83.2

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc-cccccccC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDKVLA  161 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~~  161 (262)
                      ++.+|||+| |+|.++..++.... .+|+|+|+|+.|++.|++++...        +.. +++++++|+.+ ++..    
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~--------g~~-~v~~~~~D~~~~l~~~----  237 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI--------GYE-DIEIFTFDLRKPLPDY----  237 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH--------TCC-CEEEECCCTTSCCCTT----
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------CCC-CEEEEEChhhhhchhh----
Confidence            578999999 99999998876543 68999999999999999987632        222 69999999987 4420    


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCc-EEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGG-TFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG-~li~~~~~  208 (262)
                      .+++||+|+++..++..     ....++.++.++|+||| .+++++..
T Consensus       238 ~~~~fD~Vi~~~p~~~~-----~~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          238 ALHKFDTFITDPPETLE-----AIRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             TSSCBSEEEECCCSSHH-----HHHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             ccCCccEEEECCCCchH-----HHHHHHHHHHHHcccCCeEEEEEEec
Confidence            24689999998766532     35889999999999999 44666544

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.37  E-value=1.7e-12  Score=112.68  Aligned_cols=111  Identities=13%  Similarity=0.038  Sum_probs=81.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..++..+.. |+++|+|+.+++.|++++...        +.  ...+.++|+.+....    .
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~n--------g~--~~~~~~~D~~~~l~~----~  277 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRL--------GL--RVDIRHGEALPTLRG----L  277 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHH--------TC--CCEEEESCHHHHHHT----C
T ss_pred             cCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHh--------CC--CCcEEEccHHHHHHH----h
Confidence            46899999999999999999876554 999999999999999987632        11  235668998765311    1


Q ss_pred             CCCeeEEEEcccccc-----cCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          163 DAPFDICSCQFAMHY-----SWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~-----~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .+.||+|+++.....     ......+...++..+.++|+|||.|++.+.+
T Consensus       278 ~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          278 EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS  328 (393)
T ss_dssp             CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            344999998753311     0011245678999999999999999866543

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.36  E-value=1.7e-12  Score=111.72  Aligned_cols=98  Identities=13%  Similarity=0.150  Sum_probs=80.0

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++.               .+++++.+|+.+ ++     
T Consensus       192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~v~~~~~d~~~-~~-----  249 (358)
T 1zg3_A          192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTGN---------------ENLNFVGGDMFK-SI-----  249 (358)
T ss_dssp             HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCCC---------------SSEEEEECCTTT-CC-----
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcccC---------------CCcEEEeCccCC-CC-----
Confidence            46689999999999999988874 4457999999 6787665431               238999999877 54     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCC---CcEEEEEe
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRP---GGTFIGTM  206 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~---gG~li~~~  206 (262)
                      +  .||+|++..++|++  +.+....++++++++|+|   ||++++..
T Consensus       250 ~--~~D~v~~~~vlh~~--~d~~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          250 P--SADAVLLKWVLHDW--NDEQSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             C--CCSEEEEESCGGGS--CHHHHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             C--CceEEEEcccccCC--CHHHHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            3  49999999999988  556667999999999999   99988854

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.35  E-value=1e-12  Score=114.07  Aligned_cols=114  Identities=13%  Similarity=0.152  Sum_probs=85.6

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...+         ..++.++++|+.+.... .....
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~---------~~~~~~~~~d~~~~~~~-~~~~~  277 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNG---------LGNVRVLEANAFDLLRR-LEKEG  277 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTT---------CTTEEEEESCHHHHHHH-HHHTT
T ss_pred             CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcC---------CCCceEEECCHHHHHHH-HHhcC
Confidence            6789999999999999998876 5689999999999999999886322         22389999998765320 00025


Q ss_pred             CCeeEEEEcccccc-----cCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          164 APFDICSCQFAMHY-----SWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       164 ~~fD~V~~~~~l~~-----~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .+||+|++......     ..........++..+.++|+|||.+++++..
T Consensus       278 ~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          278 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            68999998643211     0011256778999999999999999998754

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.35  E-value=6.9e-12  Score=111.49  Aligned_cols=111  Identities=15%  Similarity=0.116  Sum_probs=84.0

Q ss_pred             CCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ++.+|||+|||+|..+..++..  ..+.|+++|+|+.+++.+++++...+.         .++.++++|+..++..    
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~---------~nv~~~~~D~~~~~~~----  183 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI---------SNVALTHFDGRVFGAA----  183 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC---------CSEEEECCCSTTHHHH----
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC---------CcEEEEeCCHHHhhhh----
Confidence            7899999999999999988774  346899999999999999998864322         2589999999876521    


Q ss_pred             CCCCeeEEEEcc------cccccCC-----CH-------HHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          162 DDAPFDICSCQF------AMHYSWS-----TE-------ARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       162 ~~~~fD~V~~~~------~l~~~~~-----~~-------~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .++.||+|++..      ++.+..+     +.       ..+..++.++.++|||||+|++++.
T Consensus       184 ~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTc  247 (479)
T 2frx_A          184 VPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTC  247 (479)
T ss_dssp             STTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             ccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence            246899999842      2211100     11       2246789999999999999998865

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.35  E-value=2.3e-12  Score=103.95  Aligned_cols=103  Identities=17%  Similarity=0.193  Sum_probs=81.9

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||+|-++..++.. +...|+++|+++.|++.+++++...          +....+.+.|...-+      
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~----------g~~~~~~v~D~~~~~------  194 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL----------NVPHRTNVADLLEDR------  194 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT----------TCCEEEEECCTTTSC------
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc----------CCCceEEEeeecccC------
Confidence            45779999999999998888764 5668999999999999999998732          334778888876654      


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      +.++||+|+++-+++|+  ........+ ++.+.|+++|.+|-
T Consensus       195 p~~~~DvaL~lkti~~L--e~q~kg~g~-~ll~aL~~~~vvVS  234 (281)
T 3lcv_B          195 LDEPADVTLLLKTLPCL--ETQQRGSGW-EVIDIVNSPNIVVT  234 (281)
T ss_dssp             CCSCCSEEEETTCHHHH--HHHSTTHHH-HHHHHSSCSEEEEE
T ss_pred             CCCCcchHHHHHHHHHh--hhhhhHHHH-HHHHHhCCCCEEEe
Confidence            47889999999999988  222223455 89999999997663

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.34  E-value=3.1e-12  Score=102.24  Aligned_cols=103  Identities=17%  Similarity=0.111  Sum_probs=80.8

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||.|-++..+.  +...|+|+|+++.|++.+++.+...          +.+..+.++|....+.      
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~----------g~~~~~~v~D~~~~~~------  165 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREK----------DWDFTFALQDVLCAPP------  165 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHT----------TCEEEEEECCTTTSCC------
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhc----------CCCceEEEeecccCCC------
Confidence            467899999999998888875  6668999999999999999987632          3457899999877664      


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .++||+|++.-++||+  ........+ ++.+.|+++|.+| +.|
T Consensus       166 ~~~~DvvLllk~lh~L--E~q~~~~~~-~ll~aL~~~~vvV-sfP  206 (253)
T 3frh_A          166 AEAGDLALIFKLLPLL--EREQAGSAM-ALLQSLNTPRMAV-SFP  206 (253)
T ss_dssp             CCBCSEEEEESCHHHH--HHHSTTHHH-HHHHHCBCSEEEE-EEE
T ss_pred             CCCcchHHHHHHHHHh--hhhchhhHH-HHHHHhcCCCEEE-EcC
Confidence            5699999999999987  222333344 8888999987554 444

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.33  E-value=6.2e-12  Score=110.70  Aligned_cols=115  Identities=18%  Similarity=0.194  Sum_probs=85.2

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      +...++.+|||+|||+|..+..++... .+.|+++|+++.+++.+++++...          +.++.++++|+...+.. 
T Consensus       242 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~----------g~~~~~~~~D~~~~~~~-  310 (429)
T 1sqg_A          242 LAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL----------GMKATVKQGDGRYPSQW-  310 (429)
T ss_dssp             HCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT----------TCCCEEEECCTTCTHHH-
T ss_pred             cCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc----------CCCeEEEeCchhhchhh-
Confidence            345688899999999999999887743 368999999999999999987632          22478899998876510 


Q ss_pred             ccCCCCCeeEEEEcc------cccccCC-----CH-------HHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          159 VLADDAPFDICSCQF------AMHYSWS-----TE-------ARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~------~l~~~~~-----~~-------~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                        .+.++||+|++..      ++.+..+     +.       ..+..++.++.+.|+|||.+++++.
T Consensus       311 --~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc  375 (429)
T 1sqg_A          311 --CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  375 (429)
T ss_dssp             --HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             --cccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence              0457899999742      2222100     00       1236889999999999999998764

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.33  E-value=1.2e-12  Score=101.04  Aligned_cols=93  Identities=16%  Similarity=0.247  Sum_probs=75.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||.               +++|+|+.|++.|+++...             ++.+.++|+.+++...  .
T Consensus        10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~-------------~~~~~~~d~~~~~~~~--~   59 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN-------------EGRVSVENIKQLLQSA--H   59 (176)
T ss_dssp             CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT-------------TSEEEEEEGGGGGGGC--C
T ss_pred             CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc-------------CcEEEEechhcCcccc--C
Confidence            46889999999986               2399999999999988641             3889999998876410  1


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ++++||+|++..+++|+..   +...++++++++|||||++++..+
T Consensus        60 ~~~~fD~V~~~~~l~~~~~---~~~~~l~~~~r~LkpgG~l~~~~~  102 (176)
T 2ld4_A           60 KESSFDIILSGLVPGSTTL---HSAEILAEIARILRPGGCLFLKEP  102 (176)
T ss_dssp             CSSCEEEEEECCSTTCCCC---CCHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCEeEEEECChhhhccc---CHHHHHHHHHHHCCCCEEEEEEcc
Confidence            4688999999999998722   347899999999999999999654

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.33  E-value=3.2e-12  Score=112.61  Aligned_cols=115  Identities=17%  Similarity=0.098  Sum_probs=85.5

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +.+.++.+|||+|||+|..+..++..  ..+.|+++|+|+.+++.+++++...+.         .++.++++|+..+...
T Consensus       101 L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~---------~nv~v~~~Da~~l~~~  171 (456)
T 3m4x_A          101 AAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV---------SNAIVTNHAPAELVPH  171 (456)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC---------SSEEEECCCHHHHHHH
T ss_pred             cCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC---------CceEEEeCCHHHhhhh
Confidence            34568899999999999999988763  446899999999999999998874332         3588999998776421


Q ss_pred             cccCCCCCeeEEEEcccc---cccCCCH---------------HHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQFAM---HYSWSTE---------------ARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l---~~~~~~~---------------~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                          .++.||+|++....   ..+-..+               ..+..++.++.++|+|||.|+.++.
T Consensus       172 ----~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC  235 (456)
T 3m4x_A          172 ----FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC  235 (456)
T ss_dssp             ----HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             ----ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence                25789999985421   0000011               2234789999999999999998765

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.32  E-value=1.2e-11  Score=103.64  Aligned_cols=110  Identities=18%  Similarity=0.312  Sum_probs=76.7

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      ++..++..+...++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.++++....+         ..+++++++|+
T Consensus        30 i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~---------~~~v~~~~~D~   99 (299)
T 2h1r_A           30 ILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEG---------YNNLEVYEGDA   99 (299)
T ss_dssp             HHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTT---------CCCEEC----C
T ss_pred             HHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcC---------CCceEEEECch
Confidence            4555666666678889999999999999988765 4589999999999999999875211         14689999999


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHH---------------HHHHhccCCCcE
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRAL---------------ANVSALLRPGGT  201 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l---------------~~~~~~L~~gG~  201 (262)
                      ..++.       ++||+|+++...+..   .+....++               ..+.++++++|.
T Consensus       100 ~~~~~-------~~~D~Vv~n~py~~~---~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~  154 (299)
T 2h1r_A          100 IKTVF-------PKFDVCTANIPYKIS---SPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGD  154 (299)
T ss_dssp             CSSCC-------CCCSEEEEECCGGGH---HHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTS
T ss_pred             hhCCc-------ccCCEEEEcCCcccc---cHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCC
Confidence            87754       479999997765532   22333444               335677777764

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.32  E-value=5.1e-12  Score=111.48  Aligned_cols=114  Identities=17%  Similarity=0.155  Sum_probs=84.7

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +...++.+|||+|||+|..+..++..  ..+.|+++|+|+.+++.+++++...        +..  +.++++|+..++..
T Consensus        97 L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~--------G~~--v~~~~~Da~~l~~~  166 (464)
T 3m6w_A           97 LDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW--------GAP--LAVTQAPPRALAEA  166 (464)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH--------CCC--CEEECSCHHHHHHH
T ss_pred             cCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------CCe--EEEEECCHHHhhhh
Confidence            34568899999999999999988763  3468999999999999999988632        222  88999998776510


Q ss_pred             cccCCCCCeeEEEEccc------ccccCC-----C-------HHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQFA------MHYSWS-----T-------EARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~------l~~~~~-----~-------~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                          ..++||+|+++..      +....+     +       ...+..++.++.++|||||+|+.++.
T Consensus       167 ----~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC  230 (464)
T 3m6w_A          167 ----FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC  230 (464)
T ss_dssp             ----HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred             ----ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence                2578999996321      111100     0       12347899999999999999998764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.32  E-value=2.6e-12  Score=105.69  Aligned_cols=103  Identities=11%  Similarity=-0.041  Sum_probs=79.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ..+.+|||+|||+|..+..+++.+ .+++++|+++.+++.|++++.....     .....+++++.+|+....       
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~-----~~~~~rv~~~~~D~~~~~-------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHE-----VKNNKNFTHAKQLLDLDI-------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHH-----HHTCTTEEEESSGGGSCC-------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhcc-----ccCCCeEEEEechHHHHH-------
Confidence            456799999999999998887775 7899999999999999987642100     001346899999987642       


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                       ++||+|++...      +   +..+++.+.++|+|||.+++...+
T Consensus       138 -~~fD~Ii~d~~------d---p~~~~~~~~~~L~pgG~lv~~~~~  173 (262)
T 2cmg_A          138 -KKYDLIFCLQE------P---DIHRIDGLKRMLKEDGVFISVAKH  173 (262)
T ss_dssp             -CCEEEEEESSC------C---CHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred             -hhCCEEEECCC------C---hHHHHHHHHHhcCCCcEEEEEcCC
Confidence             67999998731      1   224899999999999999987544

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.28  E-value=6.5e-11  Score=102.36  Aligned_cols=122  Identities=10%  Similarity=0.008  Sum_probs=92.5

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCC---------------------------------------CeEEEEeCC
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKI---------------------------------------GYYVGIDIA  116 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------------~~v~gvD~s  116 (262)
                      ++......++..|||++||+|.++...+....                                       ..++|+|++
T Consensus       186 ll~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid  265 (384)
T 3ldg_A          186 IILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFD  265 (384)
T ss_dssp             HHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred             HHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECC
Confidence            44444456788999999999999887764211                                       359999999


Q ss_pred             hhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhcc
Q 024797          117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL  196 (262)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L  196 (262)
                      +.|++.|++++...        ++...+++.++|+.+++.      ..+||+|+++--+..-....++...+.+.+.+.|
T Consensus       266 ~~al~~Ar~Na~~~--------gl~~~I~~~~~D~~~l~~------~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~l  331 (384)
T 3ldg_A          266 GRMVEIARKNAREV--------GLEDVVKLKQMRLQDFKT------NKINGVLISNPPYGERLLDDKAVDILYNEMGETF  331 (384)
T ss_dssp             HHHHHHHHHHHHHT--------TCTTTEEEEECCGGGCCC------CCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--------CCCCceEEEECChHHCCc------cCCcCEEEECCchhhccCCHHHHHHHHHHHHHHH
Confidence            99999999998743        334469999999998764      4589999998654433345567777888888888


Q ss_pred             CC--CcEEEEEeCChHH
Q 024797          197 RP--GGTFIGTMPDANV  211 (262)
Q Consensus       197 ~~--gG~li~~~~~~~~  211 (262)
                      ++  ||.+++.+++.+.
T Consensus       332 k~~~g~~~~iit~~~~l  348 (384)
T 3ldg_A          332 APLKTWSQFILTNDTDF  348 (384)
T ss_dssp             TTCTTSEEEEEESCTTH
T ss_pred             hhCCCcEEEEEECCHHH
Confidence            76  9999888887764

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.27  E-value=2.7e-11  Score=103.28  Aligned_cols=99  Identities=21%  Similarity=0.174  Sum_probs=80.0

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++.. ++ +..+|+|+|+|+.+++.|++++...        +...++.++++|+.+..       
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n--------~l~~~v~~~~~D~~~~~-------  256 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLN--------KLEHKIIPILSDVREVD-------  256 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHT--------TCTTTEEEEESCGGGCC-------
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHc--------CCCCcEEEEECChHHhc-------
Confidence            5788999999999999998 76 5668999999999999999988732        23346999999987752       


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                       ++||+|+++....        ...++..+.++|+|||.+++...
T Consensus       257 -~~fD~Vi~dpP~~--------~~~~l~~~~~~L~~gG~l~~~~~  292 (336)
T 2yx1_A          257 -VKGNRVIMNLPKF--------AHKFIDKALDIVEEGGVIHYYTI  292 (336)
T ss_dssp             -CCEEEEEECCTTT--------GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred             -CCCcEEEECCcHh--------HHHHHHHHHHHcCCCCEEEEEEe
Confidence             6799999864221        23688999999999999887643

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.27  E-value=2.2e-11  Score=105.54  Aligned_cols=122  Identities=16%  Similarity=0.137  Sum_probs=89.7

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcC---------------------------------------CCeEEEEeCC
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK---------------------------------------IGYYVGIDIA  116 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---------------------------------------~~~v~gvD~s  116 (262)
                      ++......++.+|||+|||+|.++..++...                                       ...|+|+|++
T Consensus       187 ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid  266 (385)
T 3ldu_A          187 LIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDID  266 (385)
T ss_dssp             HHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESC
T ss_pred             HHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECC
Confidence            3333444577899999999999988775421                                       1369999999


Q ss_pred             hhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhcc
Q 024797          117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL  196 (262)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L  196 (262)
                      +.|++.|++++...        +...++++.++|+.+++.      +.+||+|+++-.+..-....++...+.+.+.++|
T Consensus       267 ~~ai~~Ar~Na~~~--------gl~~~i~~~~~D~~~l~~------~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~l  332 (385)
T 3ldu_A          267 EESIDIARENAEIA--------GVDEYIEFNVGDATQFKS------EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAF  332 (385)
T ss_dssp             HHHHHHHHHHHHHH--------TCGGGEEEEECCGGGCCC------SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--------CCCCceEEEECChhhcCc------CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHH
Confidence            99999999988632        233469999999988764      4689999998765422223355667777777777


Q ss_pred             CC--CcEEEEEeCChHH
Q 024797          197 RP--GGTFIGTMPDANV  211 (262)
Q Consensus       197 ~~--gG~li~~~~~~~~  211 (262)
                      ++  ||.+++.+++...
T Consensus       333 k~~~g~~~~iit~~~~l  349 (385)
T 3ldu_A          333 RKLKNWSYYLITSYEDF  349 (385)
T ss_dssp             HTSBSCEEEEEESCTTH
T ss_pred             hhCCCCEEEEEECCHHH
Confidence            76  8888888877654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.27  E-value=7.9e-11  Score=103.72  Aligned_cols=124  Identities=17%  Similarity=0.125  Sum_probs=84.8

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      .+..++..+...++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...+         ..++.|+++|+
T Consensus       274 l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~---------~~~v~f~~~d~  343 (433)
T 1uwv_A          274 MVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNG---------LQNVTFYHENL  343 (433)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTT---------CCSEEEEECCT
T ss_pred             HHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcC---------CCceEEEECCH
Confidence            3444444455567789999999999999998765 5689999999999999999876322         23699999999


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHH
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK  215 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~  215 (262)
                      .+... ....++++||+|+++-...-.    .   .+++.+.+ ++|++.+++++ ++..+.+.
T Consensus       344 ~~~l~-~~~~~~~~fD~Vv~dPPr~g~----~---~~~~~l~~-~~p~~ivyvsc-~p~tlard  397 (433)
T 1uwv_A          344 EEDVT-KQPWAKNGFDKVLLDPARAGA----A---GVMQQIIK-LEPIRIVYVSC-NPATLARD  397 (433)
T ss_dssp             TSCCS-SSGGGTTCCSEEEECCCTTCC----H---HHHHHHHH-HCCSEEEEEES-CHHHHHHH
T ss_pred             HHHhh-hhhhhcCCCCEEEECCCCccH----H---HHHHHHHh-cCCCeEEEEEC-ChHHHHhh
Confidence            77311 000135689999987644322    2   34444443 78888877764 55544433

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.26  E-value=5.4e-11  Score=99.16  Aligned_cols=89  Identities=19%  Similarity=0.214  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      .+++.++..+...++.+|||||||+|.++..+++. ..+|+|+|+++.+++.+++++..           ..+++++++|
T Consensus        37 ~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~-----------~~~v~vi~gD  104 (295)
T 3gru_A           37 NFVNKAVESANLTKDDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKEL-----------YNNIEIIWGD  104 (295)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHH-----------CSSEEEEESC
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhcc-----------CCCeEEEECc
Confidence            45666777777778899999999999999998876 45899999999999999998751           3469999999


Q ss_pred             ccccccccccCCCCCeeEEEEccccc
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMH  176 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~  176 (262)
                      +..+++     ++..||+|+++...+
T Consensus       105 ~l~~~~-----~~~~fD~Iv~NlPy~  125 (295)
T 3gru_A          105 ALKVDL-----NKLDFNKVVANLPYQ  125 (295)
T ss_dssp             TTTSCG-----GGSCCSEEEEECCGG
T ss_pred             hhhCCc-----ccCCccEEEEeCccc
Confidence            998876     456799999886654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.25  E-value=4.4e-11  Score=103.82  Aligned_cols=122  Identities=10%  Similarity=0.014  Sum_probs=87.7

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCC---------------------------------------CeEEEEeCC
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKI---------------------------------------GYYVGIDIA  116 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---------------------------------------~~v~gvD~s  116 (262)
                      ++......++..|||++||+|.++..++....                                       ..|+|+|++
T Consensus       193 ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid  272 (393)
T 3k0b_A          193 LVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDID  272 (393)
T ss_dssp             HHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred             HHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECC
Confidence            34444445778999999999999887764211                                       359999999


Q ss_pred             hhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhcc
Q 024797          117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL  196 (262)
Q Consensus       117 ~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L  196 (262)
                      +.|++.|++++...        ++..++++.++|+.+++.      ..+||+|+++--+..-....+....+.+.+.++|
T Consensus       273 ~~al~~Ar~Na~~~--------gl~~~I~~~~~D~~~~~~------~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~l  338 (393)
T 3k0b_A          273 ARLIEIAKQNAVEA--------GLGDLITFRQLQVADFQT------EDEYGVVVANPPYGERLEDEEAVRQLYREMGIVY  338 (393)
T ss_dssp             HHHHHHHHHHHHHT--------TCTTCSEEEECCGGGCCC------CCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--------CCCCceEEEECChHhCCC------CCCCCEEEECCCCccccCCchhHHHHHHHHHHHH
Confidence            99999999998743        334468999999988764      4689999998544321112244556666666666


Q ss_pred             CC--CcEEEEEeCChHH
Q 024797          197 RP--GGTFIGTMPDANV  211 (262)
Q Consensus       197 ~~--gG~li~~~~~~~~  211 (262)
                      ++  ||.+++.+++.+.
T Consensus       339 k~~~g~~~~iit~~~~l  355 (393)
T 3k0b_A          339 KRMPTWSVYVLTSYELF  355 (393)
T ss_dssp             HTCTTCEEEEEECCTTH
T ss_pred             hcCCCCEEEEEECCHHH
Confidence            66  8998888887654

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.24  E-value=1.7e-11  Score=108.39  Aligned_cols=131  Identities=17%  Similarity=0.198  Sum_probs=92.2

Q ss_pred             ccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--------------CCCeEEEEeCChhHHHHHHHHh
Q 024797           62 PIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--------------KIGYYVGIDIAEGSIEDCRTRY  127 (262)
Q Consensus        62 ~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------------~~~~v~gvD~s~~~~~~a~~~~  127 (262)
                      ..+.++.+...   ++..+.+.++.+|||+|||+|.++..+++.              ....++|+|+++.+++.|+.++
T Consensus       152 ~fyTP~~v~~~---mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl  228 (445)
T 2okc_A          152 QYFTPRPLIQA---MVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNL  228 (445)
T ss_dssp             GGCCCHHHHHH---HHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             cccCcHHHHHH---HHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHH
Confidence            34445555443   333444567789999999999998877652              2346999999999999999887


Q ss_pred             ccCccccccccCCC-CCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCC-------------HHHHHHHHHHHH
Q 024797          128 NGDADHHQRRKKFS-FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST-------------EARARRALANVS  193 (262)
Q Consensus       128 ~~~~~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-------------~~~~~~~l~~~~  193 (262)
                      ...+        .. .++.+.++|....+.      ..+||+|+++..+......             ......++.++.
T Consensus       229 ~l~g--------~~~~~~~i~~gD~l~~~~------~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~  294 (445)
T 2okc_A          229 YLHG--------IGTDRSPIVCEDSLEKEP------STLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMM  294 (445)
T ss_dssp             HHTT--------CCSSCCSEEECCTTTSCC------SSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHH
T ss_pred             HHhC--------CCcCCCCEeeCCCCCCcc------cCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHH
Confidence            5322        11 147789999877653      3589999998765543111             011247899999


Q ss_pred             hccCCCcEEEEEeCCh
Q 024797          194 ALLRPGGTFIGTMPDA  209 (262)
Q Consensus       194 ~~L~~gG~li~~~~~~  209 (262)
                      ++|+|||++++.+|+.
T Consensus       295 ~~Lk~gG~~a~V~p~~  310 (445)
T 2okc_A          295 LMLKTGGRAAVVLPDN  310 (445)
T ss_dssp             HHEEEEEEEEEEEEHH
T ss_pred             HHhccCCEEEEEECCc
Confidence            9999999999888753

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.24  E-value=1.6e-10  Score=101.38  Aligned_cols=111  Identities=19%  Similarity=0.135  Sum_probs=81.5

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|++++..        .+. . ++++++|+.++..     
T Consensus       288 ~~~~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~--------ngl-~-v~~~~~d~~~~~~-----  351 (425)
T 2jjq_A          288 LVEGEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEI--------NNV-D-AEFEVASDREVSV-----  351 (425)
T ss_dssp             HCCSSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHH--------HTC-C-EEEEECCTTTCCC-----
T ss_pred             cCCCCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHH--------cCC-c-EEEEECChHHcCc-----
Confidence            467889999999999999988764 45899999999999999998762        122 2 8999999988642     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE  218 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~  218 (262)
                       . +||+|+++......      ...+++.+. .|+|+|.+++++ ++..+.+.+..
T Consensus       352 -~-~fD~Vv~dPPr~g~------~~~~~~~l~-~l~p~givyvsc-~p~tlarDl~~  398 (425)
T 2jjq_A          352 -K-GFDTVIVDPPRAGL------HPRLVKRLN-REKPGVIVYVSC-NPETFARDVKM  398 (425)
T ss_dssp             -T-TCSEEEECCCTTCS------CHHHHHHHH-HHCCSEEEEEES-CHHHHHHHHHH
T ss_pred             -c-CCCEEEEcCCccch------HHHHHHHHH-hcCCCcEEEEEC-ChHHHHhHHhh
Confidence             2 89999987653322      123444444 489999988875 55555555443

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.23  E-value=2e-11  Score=107.02  Aligned_cols=120  Identities=22%  Similarity=0.244  Sum_probs=84.4

Q ss_pred             cccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCC
Q 024797           63 IIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF  140 (262)
Q Consensus        63 ~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~  140 (262)
                      .+..+.+.+++.   ..+...++.+|||+|||+|.++..+++.  ....++|+|+++.+++.|    .            
T Consensus        21 ~~TP~~l~~~~~---~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----~------------   81 (421)
T 2ih2_A           21 VETPPEVVDFMV---SLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----P------------   81 (421)
T ss_dssp             CCCCHHHHHHHH---HHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----T------------
T ss_pred             EeCCHHHHHHHH---HhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----C------------
Confidence            333455544433   3333345679999999999999988764  456899999999998766    1            


Q ss_pred             CCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCC--------CHHH-----------------HHHHHHHHHhc
Q 024797          141 SFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS--------TEAR-----------------ARRALANVSAL  195 (262)
Q Consensus       141 ~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~--------~~~~-----------------~~~~l~~~~~~  195 (262)
                        ++.++++|+....      +.++||+|+++-.+.....        ..+.                 ...++..+.++
T Consensus        82 --~~~~~~~D~~~~~------~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~  153 (421)
T 2ih2_A           82 --WAEGILADFLLWE------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRL  153 (421)
T ss_dssp             --TEEEEESCGGGCC------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHH
T ss_pred             --CCcEEeCChhhcC------ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHH
Confidence              3889999988764      3578999999643221100        1111                 22678999999


Q ss_pred             cCCCcEEEEEeCCh
Q 024797          196 LRPGGTFIGTMPDA  209 (262)
Q Consensus       196 L~~gG~li~~~~~~  209 (262)
                      |+|||.+++.+|+.
T Consensus       154 Lk~~G~~~~i~p~~  167 (421)
T 2ih2_A          154 LKPGGVLVFVVPAT  167 (421)
T ss_dssp             EEEEEEEEEEEEGG
T ss_pred             hCCCCEEEEEEChH
Confidence            99999999988763

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=99.23  E-value=1.4e-12  Score=106.42  Aligned_cols=113  Identities=14%  Similarity=0.160  Sum_probs=80.1

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ...++..+...++.+|||+|||+|.++..++... .+|+|+|+|+.+++.++++...           ..+++++++|+.
T Consensus        18 ~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~-----------~~~v~~~~~D~~   85 (245)
T 1yub_A           18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL-----------NTRVTLIHQDIL   85 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT-----------CSEEEECCSCCT
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhcc-----------CCceEEEECChh
Confidence            3445555555678899999999999999988765 6899999999999988776531           345899999998


Q ss_pred             ccccccccCC-CCCeeEEEEcccccccCCCHHHHHHHH--------------HHHHhccCCCcEEEEEe
Q 024797          153 EVHLDKVLAD-DAPFDICSCQFAMHYSWSTEARARRAL--------------ANVSALLRPGGTFIGTM  206 (262)
Q Consensus       153 ~~~~~~~~~~-~~~fD~V~~~~~l~~~~~~~~~~~~~l--------------~~~~~~L~~gG~li~~~  206 (262)
                      ++++     + +++| .|+++.....   +......++              +.+.++|+|||.+++.+
T Consensus        86 ~~~~-----~~~~~f-~vv~n~Py~~---~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           86 QFQF-----PNKQRY-KIVGNIPYHL---STQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             TTTC-----CCSSEE-EEEEECCSSS---CHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             hcCc-----ccCCCc-EEEEeCCccc---cHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            8775     3 3678 6666543321   122222222              55888999998876543

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.23  E-value=3.7e-11  Score=97.78  Aligned_cols=87  Identities=9%  Similarity=0.179  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      ++..++..+...++.+|||+|||+|.++..++... .+|+|+|+|+.+++.++++...           ..+++++++|+
T Consensus        18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~-----------~~~v~~~~~D~   85 (244)
T 1qam_A           18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD-----------HDNFQVLNKDI   85 (244)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT-----------CCSEEEECCCG
T ss_pred             HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhcc-----------CCCeEEEEChH
Confidence            44555555555678899999999999999988765 6899999999999999998752           24699999999


Q ss_pred             cccccccccCCCCCeeEEEEcccc
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAM  175 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l  175 (262)
                      .++++.    ....| .|+++...
T Consensus        86 ~~~~~~----~~~~~-~vv~nlPy  104 (244)
T 1qam_A           86 LQFKFP----KNQSY-KIFGNIPY  104 (244)
T ss_dssp             GGCCCC----SSCCC-EEEEECCG
T ss_pred             HhCCcc----cCCCe-EEEEeCCc
Confidence            888762    12455 45555443

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.22  E-value=3.4e-10  Score=92.55  Aligned_cols=91  Identities=11%  Similarity=0.183  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      .++..++..+...++.+|||+|||+|.++..+++.. .+|+|+|++++|++.+++++..           ..+++++++|
T Consensus        16 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~-----------~~~v~~i~~D   83 (255)
T 3tqs_A           16 FVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ-----------QKNITIYQND   83 (255)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT-----------CTTEEEEESC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh-----------CCCcEEEEcc
Confidence            345667777777788999999999999999987654 6899999999999999998752           3469999999


Q ss_pred             ccccccccccCCCCCeeEEEEcccc
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAM  175 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l  175 (262)
                      +..+++.... +.++|| |+++...
T Consensus        84 ~~~~~~~~~~-~~~~~~-vv~NlPY  106 (255)
T 3tqs_A           84 ALQFDFSSVK-TDKPLR-VVGNLPY  106 (255)
T ss_dssp             TTTCCGGGSC-CSSCEE-EEEECCH
T ss_pred             hHhCCHHHhc-cCCCeE-EEecCCc
Confidence            9988764322 245788 5555433

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.21  E-value=1.4e-10  Score=95.58  Aligned_cols=101  Identities=13%  Similarity=0.119  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC
Q 024797           70 NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (262)
Q Consensus        70 ~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (262)
                      ..+++.++..+...++ +|||+|||+|.++..+++.. .+|+|+|++++|++.+++++.            ..+++++++
T Consensus        33 ~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~------------~~~v~vi~~   98 (271)
T 3fut_A           33 EAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLS------------GLPVRLVFQ   98 (271)
T ss_dssp             HHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTT------------TSSEEEEES
T ss_pred             HHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcC------------CCCEEEEEC
Confidence            3456777777777788 99999999999999988764 589999999999999999875            346999999


Q ss_pred             cccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHH
Q 024797          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN  191 (262)
Q Consensus       150 d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~  191 (262)
                      |+..+++..    ...+|.|+++...+.   +.+-..+++..
T Consensus        99 D~l~~~~~~----~~~~~~iv~NlPy~i---ss~il~~ll~~  133 (271)
T 3fut_A           99 DALLYPWEE----VPQGSLLVANLPYHI---ATPLVTRLLKT  133 (271)
T ss_dssp             CGGGSCGGG----SCTTEEEEEEECSSC---CHHHHHHHHHH
T ss_pred             ChhhCChhh----ccCccEEEecCcccc---cHHHHHHHhcC
Confidence            999887631    136788888765542   33334444443

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=99.16  E-value=1.1e-10  Score=96.86  Aligned_cols=97  Identities=18%  Similarity=0.162  Sum_probs=69.4

Q ss_pred             hccCCCeEEEecCCC------CcchHHHHh-cC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEE-EeCcc
Q 024797           81 YARRGDVVLDLACGK------GGDLIKWDK-AK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL-ICGDC  151 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~------G~~~~~l~~-~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~-~~~d~  151 (262)
                      ...++.+|||+|||+      |.  ..+++ .+ .+.|+|+|+|+.        ..              ++++ +++|+
T Consensus        60 ~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v~--------------~v~~~i~gD~  115 (290)
T 2xyq_A           60 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------VS--------------DADSTLIGDC  115 (290)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------BC--------------SSSEEEESCG
T ss_pred             CCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------CC--------------CCEEEEECcc
Confidence            346788999999955      54  33333 23 468999999997        11              3788 99999


Q ss_pred             cccccccccCCCCCeeEEEEccccccc-------CCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYS-------WSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~-------~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .+++.      .++||+|+++...+..       .........+++++.++|+|||.|++.+.
T Consensus       116 ~~~~~------~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~  172 (290)
T 2xyq_A          116 ATVHT------ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT  172 (290)
T ss_dssp             GGCCC------SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccCCc------cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            88764      3789999997543210       00123456899999999999999999764

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.15  E-value=6.9e-10  Score=93.23  Aligned_cols=116  Identities=12%  Similarity=0.022  Sum_probs=81.0

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +.+.++.+|||+|||+|..+..++..  ..+.|+++|+++.+++.+++++...+.         .++.++++|+.++...
T Consensus        98 l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~---------~~v~~~~~D~~~~~~~  168 (309)
T 2b9e_A           98 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV---------SCCELAEEDFLAVSPS  168 (309)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC---------CSEEEEECCGGGSCTT
T ss_pred             hCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC---------CeEEEEeCChHhcCcc
Confidence            34578899999999999999988763  457899999999999999999874332         3589999998876431


Q ss_pred             cccCCCCCeeEEEEcc------cccccCC----------CH----HHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQF------AMHYSWS----------TE----ARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~------~l~~~~~----------~~----~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ..  ...+||.|++..      ++....+          ..    ..+.++|..+.++|+ ||+|+.++.
T Consensus       169 ~~--~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC  235 (309)
T 2b9e_A          169 DP--RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC  235 (309)
T ss_dssp             CG--GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred             cc--ccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence            00  015799999742      1211000          10    123457888888886 999888764

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.14  E-value=5.7e-10  Score=96.25  Aligned_cols=113  Identities=11%  Similarity=0.101  Sum_probs=81.3

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC-
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD-  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-  162 (262)
                      .+.+|||+|||+|.++..+++ ...+|+|+|+|+.+++.|++++...+        . .+++++++|+.++... .. . 
T Consensus       213 ~~~~vLDl~cG~G~~~l~la~-~~~~V~gvd~~~~ai~~a~~n~~~ng--------~-~~v~~~~~d~~~~~~~-~~-~~  280 (369)
T 3bt7_A          213 SKGDLLELYCGNGNFSLALAR-NFDRVLATEIAKPSVAAAQYNIAANH--------I-DNVQIIRMAAEEFTQA-MN-GV  280 (369)
T ss_dssp             CCSEEEEESCTTSHHHHHHGG-GSSEEEEECCCHHHHHHHHHHHHHTT--------C-CSEEEECCCSHHHHHH-HS-SC
T ss_pred             CCCEEEEccCCCCHHHHHHHh-cCCEEEEEECCHHHHHHHHHHHHHcC--------C-CceEEEECCHHHHHHH-Hh-hc
Confidence            367899999999999998865 45689999999999999999876322        2 3699999998765210 00 1 


Q ss_pred             ------------CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797          163 ------------DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE  218 (262)
Q Consensus       163 ------------~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~  218 (262)
                                  ..+||+|++.-...-          +..++.+.|+++|.++....++..+.+.+..
T Consensus       281 ~~~~~l~~~~~~~~~fD~Vv~dPPr~g----------~~~~~~~~l~~~g~ivyvsc~p~t~ard~~~  338 (369)
T 3bt7_A          281 REFNRLQGIDLKSYQCETIFVDPPRSG----------LDSETEKMVQAYPRILYISCNPETLCKNLET  338 (369)
T ss_dssp             CCCTTGGGSCGGGCCEEEEEECCCTTC----------CCHHHHHHHTTSSEEEEEESCHHHHHHHHHH
T ss_pred             cccccccccccccCCCCEEEECcCccc----------cHHHHHHHHhCCCEEEEEECCHHHHHHHHHH
Confidence                        137999997643221          2244666677899998888888766655443

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.12  E-value=4.3e-10  Score=97.08  Aligned_cols=114  Identities=15%  Similarity=0.040  Sum_probs=81.7

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccc--ccc-----ccCCCCCeEEEeCcccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADH--HQR-----RKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~--~~~-----~~~~~~~v~~~~~d~~~~~  155 (262)
                      ++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++++......  ..+     ..+. .+++++++|+..+.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl-~~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGE-KTIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESS-SEEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCC-CceEEEcCcHHHHH
Confidence            6889999999999999998875 5557999999999999999988632000  000     0011 23889999987753


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      ..    ..+.||+|++.- ..       ....++..+.+.|++||.++++..+..
T Consensus       126 ~~----~~~~fD~I~lDP-~~-------~~~~~l~~a~~~lk~gG~l~vt~td~~  168 (378)
T 2dul_A          126 AE----RHRYFHFIDLDP-FG-------SPMEFLDTALRSAKRRGILGVTATDGA  168 (378)
T ss_dssp             HH----STTCEEEEEECC-SS-------CCHHHHHHHHHHEEEEEEEEEEECCHH
T ss_pred             Hh----ccCCCCEEEeCC-CC-------CHHHHHHHHHHhcCCCCEEEEEeecch
Confidence            21    135799999654 21       124678889999999999988865443

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.09  E-value=3.3e-10  Score=97.94  Aligned_cols=108  Identities=16%  Similarity=0.082  Sum_probs=83.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCC-eEEEeCccccccc-cc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGDCYEVHL-DK  158 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-v~~~~~d~~~~~~-~~  158 (262)
                      .++.+|||++||+|.++..++..  +.+.|+++|+++.+++.+++++...        ++..+ ++++++|+.++.. . 
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~N--------gl~~~~v~v~~~Da~~~l~~~-  121 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLN--------NIPEDRYEIHGMEANFFLRKE-  121 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHT--------TCCGGGEEEECSCHHHHHHSC-
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHh--------CCCCceEEEEeCCHHHHHHHh-
Confidence            46789999999999999988774  3357999999999999999998732        23334 8999999876521 1 


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                         ..+.||+|++.- ..    .   ...++..+.+.|++||+++++..+..
T Consensus       122 ---~~~~fD~V~lDP-~g----~---~~~~l~~a~~~Lk~gGll~~t~t~~~  162 (392)
T 3axs_A          122 ---WGFGFDYVDLDP-FG----T---PVPFIESVALSMKRGGILSLTATDTA  162 (392)
T ss_dssp             ---CSSCEEEEEECC-SS----C---CHHHHHHHHHHEEEEEEEEEEECCHH
T ss_pred             ---hCCCCcEEEECC-Cc----C---HHHHHHHHHHHhCCCCEEEEEecchh
Confidence               145799999876 21    1   23578889999999999999876654

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.09  E-value=5.8e-10  Score=90.89  Aligned_cols=74  Identities=14%  Similarity=0.172  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      .+++.++..+...++.+|||+|||+|.++..+++.+..+|+|+|+++.|++.++++ .            ..+++++++|
T Consensus        18 ~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~------------~~~v~~i~~D   84 (249)
T 3ftd_A           18 GVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G------------DERLEVINED   84 (249)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C------------CTTEEEECSC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c------------CCCeEEEEcc
Confidence            45666777666778899999999999999999776556899999999999999876 3            3468999999


Q ss_pred             ccccccc
Q 024797          151 CYEVHLD  157 (262)
Q Consensus       151 ~~~~~~~  157 (262)
                      +..+++.
T Consensus        85 ~~~~~~~   91 (249)
T 3ftd_A           85 ASKFPFC   91 (249)
T ss_dssp             TTTCCGG
T ss_pred             hhhCChh
Confidence            9988764

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.03  E-value=7.1e-10  Score=100.10  Aligned_cols=138  Identities=16%  Similarity=0.182  Sum_probs=91.9

Q ss_pred             CccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc----C---------------CCeEEEEeCChhHHH
Q 024797           61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA----K---------------IGYYVGIDIAEGSIE  121 (262)
Q Consensus        61 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~----~---------------~~~v~gvD~s~~~~~  121 (262)
                      +..+.++.+...   ++..+.+.++.+|||+|||+|.++..+++.    .               ...++|+|+++.++.
T Consensus       149 G~fyTP~~iv~~---mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~  225 (541)
T 2ar0_A          149 GQYFTPRPLIKT---IIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRR  225 (541)
T ss_dssp             -CCCCCHHHHHH---HHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHH
T ss_pred             CeeeCCHHHHHH---HHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHH
Confidence            445555555444   333344567789999999999998876542    1               136999999999999


Q ss_pred             HHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCC----------HHHHHHHHHH
Q 024797          122 DCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST----------EARARRALAN  191 (262)
Q Consensus       122 ~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~----------~~~~~~~l~~  191 (262)
                      .|+.++.-.+..+.    ....+.+.++|....+..    +.++||+|+++-.+......          ......++..
T Consensus       226 lA~~nl~l~gi~~~----~~~~~~I~~gDtL~~~~~----~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~  297 (541)
T 2ar0_A          226 LALMNCLLHDIEGN----LDHGGAIRLGNTLGSDGE----NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQH  297 (541)
T ss_dssp             HHHHHHHTTTCCCB----GGGTBSEEESCTTSHHHH----TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHH
T ss_pred             HHHHHHHHhCCCcc----ccccCCeEeCCCcccccc----cccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHH
Confidence            99988753221100    001267889997654321    35789999998655432110          1123478999


Q ss_pred             HHhccCCCcEEEEEeCCh
Q 024797          192 VSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       192 ~~~~L~~gG~li~~~~~~  209 (262)
                      +.+.|+|||++++.+|+.
T Consensus       298 ~l~~Lk~gGr~a~V~p~~  315 (541)
T 2ar0_A          298 IIETLHPGGRAAVVVPDN  315 (541)
T ss_dssp             HHHHEEEEEEEEEEEEHH
T ss_pred             HHHHhCCCCEEEEEecCc
Confidence            999999999999888754

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.01  E-value=3.6e-09  Score=98.27  Aligned_cols=127  Identities=14%  Similarity=0.110  Sum_probs=86.7

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHhc-------------------------------------------CCCeEE
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA-------------------------------------------KIGYYV  111 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-------------------------------------------~~~~v~  111 (262)
                      .++......++.+|||++||+|.++...+..                                           ....++
T Consensus       181 ~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~  260 (703)
T 3v97_A          181 AIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFY  260 (703)
T ss_dssp             HHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_pred             HHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEE
Confidence            3444444457789999999999998876542                                           113699


Q ss_pred             EEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHH---
Q 024797          112 GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRA---  188 (262)
Q Consensus       112 gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~---  188 (262)
                      |+|+++.|++.|++++...+        +...+++.++|+.++...   ...++||+|+++--...-+...+....+   
T Consensus       261 G~Did~~av~~A~~N~~~ag--------v~~~i~~~~~D~~~~~~~---~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~  329 (703)
T 3v97_A          261 GSDSDARVIQRARTNARLAG--------IGELITFEVKDVAQLTNP---LPKGPYGTVLSNPPYGERLDSEPALIALHSL  329 (703)
T ss_dssp             EEESCHHHHHHHHHHHHHTT--------CGGGEEEEECCGGGCCCS---CTTCCCCEEEECCCCCC---CCHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHHcC--------CCCceEEEECChhhCccc---cccCCCCEEEeCCCccccccchhHHHHHHHH
Confidence            99999999999999987433        344589999999886421   0233899999985443211222344444   


Q ss_pred             HHHHHhccCCCcEEEEEeCChHHH
Q 024797          189 LANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       189 l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      +.++.+.+.|||.+++.+++.+..
T Consensus       330 l~~~lk~~~~g~~~~ilt~~~~l~  353 (703)
T 3v97_A          330 LGRIMKNQFGGWNLSLFSASPDLL  353 (703)
T ss_dssp             HHHHHHHHCTTCEEEEEESCHHHH
T ss_pred             HHHHHHhhCCCCeEEEEeCCHHHH
Confidence            444555556899999999988653

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.01  E-value=8.4e-10  Score=92.24  Aligned_cols=90  Identities=16%  Similarity=0.085  Sum_probs=67.3

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      .++..+...++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|++++...          +.++.++++|+.+
T Consensus        17 e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~----------g~~v~~v~~d~~~   86 (301)
T 1m6y_A           17 EVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----------SDRVSLFKVSYRE   86 (301)
T ss_dssp             HHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG----------TTTEEEEECCGGG
T ss_pred             HHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc----------CCcEEEEECCHHH
Confidence            3445555678899999999999999998875 3568999999999999999987631          2469999999887


Q ss_pred             cccccccCCCCCeeEEEEccc
Q 024797          154 VHLDKVLADDAPFDICSCQFA  174 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~  174 (262)
                      ++........++||.|++...
T Consensus        87 l~~~l~~~g~~~~D~Vl~D~g  107 (301)
T 1m6y_A           87 ADFLLKTLGIEKVDGILMDLG  107 (301)
T ss_dssp             HHHHHHHTTCSCEEEEEEECS
T ss_pred             HHHHHHhcCCCCCCEEEEcCc
Confidence            652000001257999998653

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.00  E-value=1.4e-09  Score=98.07  Aligned_cols=133  Identities=16%  Similarity=0.089  Sum_probs=88.3

Q ss_pred             CccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--------C--------CCeEEEEeCChhHHHHHH
Q 024797           61 SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--------K--------IGYYVGIDIAEGSIEDCR  124 (262)
Q Consensus        61 ~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~--------~~~v~gvD~s~~~~~~a~  124 (262)
                      +..+.++.+...+..+   +.+.++ +|||.+||+|.++..++..        .        ...++|+|+++.++..|+
T Consensus       225 G~fyTP~~Vv~lmv~l---l~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~  300 (544)
T 3khk_A          225 GQYYTPKSIVTLIVEM---LEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAA  300 (544)
T ss_dssp             TTTCCCHHHHHHHHHH---HCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHH
T ss_pred             CeEeCCHHHHHHHHHH---HhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHH
Confidence            4455566665544443   333333 9999999999988776431        0        346999999999999999


Q ss_pred             HHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccc-------------------------cC
Q 024797          125 TRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY-------------------------SW  179 (262)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~-------------------------~~  179 (262)
                      .++.-.        +...++.+.++|....+.    .+..+||+|+++--+..                         +.
T Consensus       301 ~Nl~l~--------gi~~~i~i~~gDtL~~~~----~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~  368 (544)
T 3khk_A          301 MNMVIR--------GIDFNFGKKNADSFLDDQ----HPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTP  368 (544)
T ss_dssp             HHHHHT--------TCCCBCCSSSCCTTTSCS----CTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCC
T ss_pred             HHHHHh--------CCCcccceeccchhcCcc----cccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccC
Confidence            887632        222334447788655432    14578999999754432                         10


Q ss_pred             CCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          180 STEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       180 ~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      +.....-.++..+.+.|+|||++.+.+|+.
T Consensus       369 ~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~g  398 (544)
T 3khk_A          369 PTGNANFAWMLHMLYHLAPTGSMALLLANG  398 (544)
T ss_dssp             CTTCTHHHHHHHHHHTEEEEEEEEEEEETH
T ss_pred             CCcchhHHHHHHHHHHhccCceEEEEecch
Confidence            001111368999999999999999988865

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=99.00  E-value=3.2e-09  Score=87.79  Aligned_cols=117  Identities=15%  Similarity=0.179  Sum_probs=84.8

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...+.+||-||.|.|..+..+++. +..+++.+|+++.+++.|++.+...+..    ..-..+++++.+|+..+-..   
T Consensus        81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~----~~~dpRv~v~~~Dg~~~l~~---  153 (294)
T 3o4f_A           81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAG----SYDDPRFKLVIDDGVNFVNQ---  153 (294)
T ss_dssp             SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTT----GGGCTTEEEEESCTTTTTSC---
T ss_pred             CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCcccccc----ccCCCcEEEEechHHHHHhh---
Confidence            456789999999999999998875 4568999999999999999987532111    01146799999999876432   


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                       ..++||+|++...-.......-.-..+++.+++.|+|||+++.-.
T Consensus       154 -~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~  198 (294)
T 3o4f_A          154 -TSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN  198 (294)
T ss_dssp             -SSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred             -ccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence             467899999865321110000012468899999999999999854

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.98  E-value=5.7e-09  Score=86.35  Aligned_cols=76  Identities=13%  Similarity=0.205  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCC---CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEE
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKI---GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI  147 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~  147 (262)
                      .+++.++..+...++.+|||||||+|.++..+++...   ++|+|+|+++.|++.++++.             ..+++++
T Consensus        29 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-------------~~~v~~i   95 (279)
T 3uzu_A           29 GVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-------------GELLELH   95 (279)
T ss_dssp             HHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-------------GGGEEEE
T ss_pred             HHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-------------CCCcEEE
Confidence            4566677777777889999999999999999887433   23999999999999999873             1248999


Q ss_pred             eCcccccccccc
Q 024797          148 CGDCYEVHLDKV  159 (262)
Q Consensus       148 ~~d~~~~~~~~~  159 (262)
                      ++|+..+++...
T Consensus        96 ~~D~~~~~~~~~  107 (279)
T 3uzu_A           96 AGDALTFDFGSI  107 (279)
T ss_dssp             ESCGGGCCGGGG
T ss_pred             ECChhcCChhHh
Confidence            999999887543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.97  E-value=7.5e-09  Score=93.20  Aligned_cols=143  Identities=13%  Similarity=0.121  Sum_probs=96.5

Q ss_pred             hcCccccchhHHHHHHHHHHHHh-ccCCCeEEEecCCCCcchHHHHhc----CCCeEEEEeCChhHHHHHHHHhccCccc
Q 024797           59 EASPIIHLKKLNNWIKSVLVQLY-ARRGDVVLDLACGKGGDLIKWDKA----KIGYYVGIDIAEGSIEDCRTRYNGDADH  133 (262)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~----~~~~v~gvD~s~~~~~~a~~~~~~~~~~  133 (262)
                      ..+..+.++.+...+..++.... +.++.+|||.+||+|.++..+++.    ....++|+|+++.++..|+.++.-.+..
T Consensus       195 ~~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~  274 (542)
T 3lkd_A          195 KAGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVP  274 (542)
T ss_dssp             CCSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             cCCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCC
Confidence            34566667777666555543211 346789999999999998887653    2457999999999999999886532221


Q ss_pred             cccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCC-------------------HHHHHHHHHHHHh
Q 024797          134 HQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST-------------------EARARRALANVSA  194 (262)
Q Consensus       134 ~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-------------------~~~~~~~l~~~~~  194 (262)
                             ..++.+.++|.....++.  .+..+||+|+++--+..-+..                   ...--.++..+.+
T Consensus       275 -------~~~~~I~~gDtL~~d~p~--~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~  345 (542)
T 3lkd_A          275 -------IENQFLHNADTLDEDWPT--QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYY  345 (542)
T ss_dssp             -------GGGEEEEESCTTTSCSCC--SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHH
T ss_pred             -------cCccceEecceecccccc--cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHH
Confidence                   134788999987652210  145789999987433211100                   0001258999999


Q ss_pred             ccC-CCcEEEEEeCChH
Q 024797          195 LLR-PGGTFIGTMPDAN  210 (262)
Q Consensus       195 ~L~-~gG~li~~~~~~~  210 (262)
                      .|+ +||++.+.+|+.-
T Consensus       346 ~Lk~~gGr~a~VlP~g~  362 (542)
T 3lkd_A          346 HLKQDNGVMAIVLPHGV  362 (542)
T ss_dssp             TBCTTTCEEEEEEETHH
T ss_pred             HhCCCceeEEEEecchH
Confidence            999 9999999888753

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.96  E-value=1.3e-09  Score=88.59  Aligned_cols=117  Identities=18%  Similarity=0.196  Sum_probs=75.2

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      .+.......++.+|||+|||+|.++..++.. +...++|+|++.++.......           .....++..++.++..
T Consensus        65 ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-----------~~~g~~ii~~~~~~dv  133 (277)
T 3evf_A           65 WFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-----------QSLGWNIITFKDKTDI  133 (277)
T ss_dssp             HHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-----------CBTTGGGEEEECSCCT
T ss_pred             HHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-----------CcCCCCeEEEecccee
Confidence            3444444567889999999999999977654 455688898885431000000           0112245556666544


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCHHH---HHHHHHHHHhccCCC-cEEEEEeCC
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEAR---ARRALANVSALLRPG-GTFIGTMPD  208 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~---~~~~l~~~~~~L~~g-G~li~~~~~  208 (262)
                      ..+     +.++||+|++..+.+ .-....|   ...+++.+.++|+|| |.+++.+..
T Consensus       134 ~~l-----~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          134 HRL-----EPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             TTS-----CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             hhc-----CCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence            444     567899999988665 2001112   123578899999999 999999876

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.95  E-value=1.6e-09  Score=88.71  Aligned_cols=82  Identities=15%  Similarity=0.012  Sum_probs=61.4

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCCh-------hHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE-------GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~-------~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ..++.+|||+|||+|.++..++.. ..+|+|+|+|+       .+++.|+++....        +...+++++++|+.++
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~--------~~~~ri~~~~~d~~~~  151 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQ--------DTAARINLHFGNAAEQ  151 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHH--------HHHTTEEEEESCHHHH
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhh--------CCccCeEEEECCHHHH
Confidence            346789999999999999988775 45899999999       9999998765421        1123499999998774


Q ss_pred             -c-cccccCCC--CCeeEEEEcccccc
Q 024797          155 -H-LDKVLADD--APFDICSCQFAMHY  177 (262)
Q Consensus       155 -~-~~~~~~~~--~~fD~V~~~~~l~~  177 (262)
                       + +     ++  ++||+|+++..+.+
T Consensus       152 l~~~-----~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          152 MPAL-----VKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHH-----HHHHCCCSEEEECCCC--
T ss_pred             HHhh-----hccCCCccEEEECCCCCC
Confidence             2 2     23  68999999876654

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.93  E-value=1.8e-09  Score=88.11  Aligned_cols=91  Identities=8%  Similarity=-0.005  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCe--EEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGY--YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC  148 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~--v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~  148 (262)
                      .++..++..+...++.+|||+|||+|.++. +.. . .+  |+|+|+++.|++.++++...           ..++++++
T Consensus         8 ~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~-----------~~~v~~i~   73 (252)
T 1qyr_A            8 FVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFL-----------GPKLTIYQ   73 (252)
T ss_dssp             HHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTT-----------GGGEEEEC
T ss_pred             HHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhcc-----------CCceEEEE
Confidence            345566666666788899999999999999 643 2 46  99999999999999987652           13599999


Q ss_pred             CcccccccccccCCCCCeeEEEEcccc
Q 024797          149 GDCYEVHLDKVLADDAPFDICSCQFAM  175 (262)
Q Consensus       149 ~d~~~~~~~~~~~~~~~fD~V~~~~~l  175 (262)
                      +|+..+++.......+..+.|+++...
T Consensus        74 ~D~~~~~~~~~~~~~~~~~~vvsNlPY  100 (252)
T 1qyr_A           74 QDAMTFNFGELAEKMGQPLRVFGNLPY  100 (252)
T ss_dssp             SCGGGCCHHHHHHHHTSCEEEEEECCT
T ss_pred             CchhhCCHHHhhcccCCceEEEECCCC
Confidence            999887753211001234677666544

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.88  E-value=4.6e-08  Score=90.43  Aligned_cols=142  Identities=15%  Similarity=0.061  Sum_probs=88.4

Q ss_pred             cCccccchhHHHHHHHHHHHHhc---cCCCeEEEecCCCCcchHHHHhcC----CCeEEEEeCChhHHHHH--HHHhccC
Q 024797           60 ASPIIHLKKLNNWIKSVLVQLYA---RRGDVVLDLACGKGGDLIKWDKAK----IGYYVGIDIAEGSIEDC--RTRYNGD  130 (262)
Q Consensus        60 ~~~~~~~~~~~~~~~~~l~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~----~~~v~gvD~s~~~~~~a--~~~~~~~  130 (262)
                      .+..+..+.+...+..+......   .++.+|||+|||+|.++..++...    ...++|+|+++.+++.|  +..+...
T Consensus       294 ~GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN  373 (878)
T 3s1s_A          294 EGVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFP  373 (878)
T ss_dssp             CBSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTST
T ss_pred             CceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHh
Confidence            34455566666665555222222   257799999999999998876532    24699999999999999  4433210


Q ss_pred             ccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHH-------------------------HH
Q 024797          131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA-------------------------RA  185 (262)
Q Consensus       131 ~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~-------------------------~~  185 (262)
                      ...    .+ .....+...|+......    ..++||+|+++--+........                         ..
T Consensus       374 ~Ll----hG-i~~~~I~~dD~L~~~~~----~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy  444 (878)
T 3s1s_A          374 QLV----SS-NNAPTITGEDVCSLNPE----DFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVE  444 (878)
T ss_dssp             TTC----BT-TBCCEEECCCGGGCCGG----GGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHH
T ss_pred             hhh----cC-CCcceEEecchhccccc----ccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchH
Confidence            000    00 11134455555543211    3578999999865521111111                         13


Q ss_pred             HHHHHHHHhccCCCcEEEEEeCChH
Q 024797          186 RRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       186 ~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      ..++..+.+.|++||++.+.+|+.-
T Consensus       445 ~aFIe~Al~lLKpGGrLAfIlP~s~  469 (878)
T 3s1s_A          445 ALFLELVTELVQDGTVISAIMPKQY  469 (878)
T ss_dssp             HHHHHHHHHHSCTTCEEEEEEETHH
T ss_pred             HHHHHHHHHhcCCCcEEEEEEChHH
Confidence            3478889999999999999998763

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.86  E-value=2.1e-08  Score=78.54  Aligned_cols=104  Identities=8%  Similarity=-0.000  Sum_probs=73.0

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCC--CCCeEEEeCcccccc-----
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF--SFPARLICGDCYEVH-----  155 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~--~~~v~~~~~d~~~~~-----  155 (262)
                      .+..+|||+|||  .-+..+++...++|+.+|.+++..+.|++.+...        ++  ..+++++.+|+.+..     
T Consensus        29 ~~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~--------g~~~~~~I~~~~gda~~~~~wg~p   98 (202)
T 3cvo_A           29 EEAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAAN--------PPAEGTEVNIVWTDIGPTGDWGHP   98 (202)
T ss_dssp             HHCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHS--------CCCTTCEEEEEECCCSSBCGGGCB
T ss_pred             hCCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc--------CCCCCCceEEEEeCchhhhccccc
Confidence            457799999995  4455555433579999999999999999988743        23  446899999975420     


Q ss_pred             --------ccc----c--cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 --------LDK----V--LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 --------~~~----~--~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                              +..    .  ....++||+|++.+..         ....+..+.+.|+|||++++.
T Consensus        99 ~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~k---------~~~~~~~~l~~l~~GG~Iv~D  153 (202)
T 3cvo_A           99 VSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGRF---------RVGCALATAFSITRPVTLLFD  153 (202)
T ss_dssp             SSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSSS---------HHHHHHHHHHHCSSCEEEEET
T ss_pred             ccchhhhhHHHHhhhhhccccCCCCCEEEEeCCC---------chhHHHHHHHhcCCCeEEEEe
Confidence                    100    0  0023789999988742         124556677999999999874

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.85  E-value=5.4e-09  Score=95.11  Aligned_cols=102  Identities=12%  Similarity=0.084  Sum_probs=73.0

Q ss_pred             CCeEEEecCCCCcchHHHHh---cCCC--eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           85 GDVVLDLACGKGGDLIKWDK---AKIG--YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~---~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ...|||+|||+|-+....++   ....  +|++||-|+ +...|++...        .+++...|+++++|++++.+   
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~--------~N~~~dkVtVI~gd~eev~L---  425 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQ--------FEEWGSQVTVVSSDMREWVA---  425 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHH--------HHTTGGGEEEEESCTTTCCC---
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHH--------hccCCCeEEEEeCcceeccC---
Confidence            35799999999988555444   2222  689999997 6667777655        24567789999999999875   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                         ++++|+||+=.. .+++.. +....++....+.|||||.++
T Consensus       426 ---PEKVDIIVSEwM-G~fLl~-E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          426 ---PEKADIIVSELL-GSFADN-ELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             ---SSCEEEEECCCC-BTTBGG-GCHHHHHHHHGGGEEEEEEEE
T ss_pred             ---CcccCEEEEEcC-cccccc-cCCHHHHHHHHHhcCCCcEEc
Confidence               578999997431 111111 223467888999999999976

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.82  E-value=4.5e-09  Score=85.46  Aligned_cols=117  Identities=19%  Similarity=0.205  Sum_probs=74.5

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      .+.......++.+|||+|||+|.++..++. .+...++|+|++..+...+...           .....++.....++..
T Consensus        81 ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-----------~~~g~~ii~~~~~~dv  149 (282)
T 3gcz_A           81 WMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-----------TTLGWNLIRFKDKTDV  149 (282)
T ss_dssp             HHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-----------CBTTGGGEEEECSCCG
T ss_pred             HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-----------ccCCCceEEeeCCcch
Confidence            344444567888999999999999998764 4555799999987642211100           0112233334433322


Q ss_pred             cccccccCCCCCeeEEEEcccccccCC---CHHHHHHHHHHHHhccCCC--cEEEEEeCC
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWS---TEARARRALANVSALLRPG--GTFIGTMPD  208 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~---~~~~~~~~l~~~~~~L~~g--G~li~~~~~  208 (262)
                      ..+     +..++|+|+|..+.+ .-.   +......++.-+.++|+||  |.|++.+..
T Consensus       150 ~~l-----~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          150 FNM-----EVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             GGS-----CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             hhc-----CCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            223     568899999998776 211   1111224577788999999  999999876

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.81  E-value=7e-09  Score=94.43  Aligned_cols=108  Identities=15%  Similarity=0.011  Sum_probs=72.8

Q ss_pred             CCeEEEecCCCCcchHHHHhc--------------CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           85 GDVVLDLACGKGGDLIKWDKA--------------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~--------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      +..|||+|||+|-++...+..              ...+|++||.|+.++...+.+..         .++...|+++.+|
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~---------Ng~~d~VtVI~gd  480 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV---------RTWKRRVTIIESD  480 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH---------HTTTTCSEEEESC
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh---------cCCCCeEEEEeCc
Confidence            458999999999886543221              12389999999977765554433         2456679999999


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                      ++++.++......+++|+|++=.. -++. ..+.....|..+.+.|+|||.++
T Consensus       481 ~eev~lp~~~~~~ekVDIIVSElm-Gsfl-~nEL~pe~Ld~v~r~Lkp~Gi~i  531 (745)
T 3ua3_A          481 MRSLPGIAKDRGFEQPDIIVSELL-GSFG-DNELSPECLDGVTGFLKPTTISI  531 (745)
T ss_dssp             GGGHHHHHHHTTCCCCSEEEECCC-BTTB-GGGSHHHHHHTTGGGSCTTCEEE
T ss_pred             hhhcccccccCCCCcccEEEEecc-cccc-chhccHHHHHHHHHhCCCCcEEE
Confidence            998865100001578999997542 1211 11334567788889999999876

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.76  E-value=4.3e-08  Score=84.09  Aligned_cols=136  Identities=12%  Similarity=0.066  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHhccC-----CCeEEEecCCCCcchHHHHhc----------------CCCeEEEEeCChhHHHHHHHHhc
Q 024797           70 NNWIKSVLVQLYARR-----GDVVLDLACGKGGDLIKWDKA----------------KIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        70 ~~~~~~~l~~~~~~~-----~~~vLDiGcG~G~~~~~l~~~----------------~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      ..++...+..+....     ..+|+|+|||+|..+..++..                +.-+|+.-|+........-+.+.
T Consensus        33 ~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~  112 (374)
T 3b5i_A           33 LHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLP  112 (374)
T ss_dssp             HHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSC
T ss_pred             HHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhh
Confidence            344454555444332     468999999999988776220                22257788887777665555444


Q ss_pred             cCcccc---ccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCH-----------------------
Q 024797          129 GDADHH---QRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE-----------------------  182 (262)
Q Consensus       129 ~~~~~~---~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~-----------------------  182 (262)
                      ......   ........+--|..+....+-  ..++|+++||+|+++.++||+-..+                       
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy--~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~  190 (374)
T 3b5i_A          113 PLVSNTCMEECLAADGNRSYFVAGVPGSFY--RRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGE  190 (374)
T ss_dssp             CBCCCC--CCC---CCCBCSEEEEEESCTT--SCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCH
T ss_pred             hhhhhcchhhhccccCCCceEEEecChhhh--cccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCH
Confidence            210000   000000001123333222211  1123789999999999999973211                       


Q ss_pred             -----------HHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          183 -----------ARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       183 -----------~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                                 .|...+|+..++.|+|||.+++++.
T Consensus       191 ~v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          191 KTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence                       2677789999999999999999874

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.71  E-value=5.5e-08  Score=79.51  Aligned_cols=86  Identities=15%  Similarity=0.134  Sum_probs=66.8

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ++.++..+.+.++..+||++||.|.++..+++. .++|+|+|.++.+++.|++ +.            ..++.++++++.
T Consensus        11 l~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~------------~~rv~lv~~~f~   76 (285)
T 1wg8_A           11 YQEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LH------------LPGLTVVQGNFR   76 (285)
T ss_dssp             HHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TC------------CTTEEEEESCGG
T ss_pred             HHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hc------------cCCEEEEECCcc
Confidence            445666666778899999999999999999876 6699999999999999998 75            146999999998


Q ss_pred             ccccccccCCCCCeeEEEEc
Q 024797          153 EVHLDKVLADDAPFDICSCQ  172 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~  172 (262)
                      +++..-.....+++|.|++.
T Consensus        77 ~l~~~L~~~g~~~vDgIL~D   96 (285)
T 1wg8_A           77 HLKRHLAALGVERVDGILAD   96 (285)
T ss_dssp             GHHHHHHHTTCSCEEEEEEE
T ss_pred             hHHHHHHHcCCCCcCEEEeC
Confidence            76421000023579999974

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.69  E-value=1.3e-08  Score=88.15  Aligned_cols=78  Identities=19%  Similarity=0.095  Sum_probs=59.9

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-ccccccCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~~~  162 (262)
                      ++.+|||+|||+|..+..+++. ..+|+|+|+|+.|++.|++++....      .+. .+++++++|+.+. +..    +
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~------~gl-~~i~~i~~Da~~~L~~~----~  160 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLL------NEG-KDVNILTGDFKEYLPLI----K  160 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHS------CTT-CEEEEEESCGGGSHHHH----H
T ss_pred             CCCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhc------cCC-CcEEEEECcHHHhhhhc----c
Confidence            4889999999999998887654 4589999999999999999886320      011 4599999999874 210    1


Q ss_pred             CCCeeEEEEcc
Q 024797          163 DAPFDICSCQF  173 (262)
Q Consensus       163 ~~~fD~V~~~~  173 (262)
                      +++||+|+++-
T Consensus       161 ~~~fDvV~lDP  171 (410)
T 3ll7_A          161 TFHPDYIYVDP  171 (410)
T ss_dssp             HHCCSEEEECC
T ss_pred             CCCceEEEECC
Confidence            35799999863

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.66  E-value=1.6e-07  Score=80.07  Aligned_cols=121  Identities=17%  Similarity=0.131  Sum_probs=85.9

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      +.+.++.+|||++||+|.-+..++.. ..+.++++|+++.-+...++++...+..+   .....++.+.+.|...++.. 
T Consensus       144 L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~---~~~~~~v~v~~~D~~~~~~~-  219 (359)
T 4fzv_A          144 LGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEE---IRDGNQVRVTSWDGRKWGEL-  219 (359)
T ss_dssp             HCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTT---TTTSSSEEEECCCGGGHHHH-
T ss_pred             hCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhh---hccCCceEEEeCchhhcchh-
Confidence            45678999999999999988888764 33469999999999999888776433221   11234688889998776431 


Q ss_pred             ccCCCCCeeEEEEcccccc----c--------C-CCH-------HHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          159 VLADDAPFDICSCQFAMHY----S--------W-STE-------ARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~----~--------~-~~~-------~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                         ..+.||.|++..-..-    .        + ...       ..+.++|..+.+.|||||+|+-++.
T Consensus       220 ---~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTC  285 (359)
T 4fzv_A          220 ---EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTC  285 (359)
T ss_dssp             ---STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred             ---ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Confidence               4578999997432110    0        0 011       2346788999999999999988875

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.66  E-value=2.8e-07  Score=78.58  Aligned_cols=121  Identities=20%  Similarity=0.176  Sum_probs=82.3

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+||-+|.|.|..+.++++.+..+++.||+++.+++.|++.+......... ..-..+++++.+|+..+-. .....
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d-~pr~~rv~vii~Da~~fl~-~~~~~  281 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLD-NLKGDCYQVLIEDCIPVLK-RYAKE  281 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCS-SSEETTEEEEESCHHHHHH-HHHHH
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhc-cccccceeeehHHHHHHHH-hhhhc
Confidence            356799999999999999998877778999999999999999987632111000 0012458899999865421 00002


Q ss_pred             CCCeeEEEEccccccc------CCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          163 DAPFDICSCQFAMHYS------WSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~------~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .++||+|++...-...      ......-..+++.++++|+|||+++.-
T Consensus       282 ~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          282 GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            4689999987422110      001223467899999999999999863

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.58  E-value=5.8e-07  Score=77.17  Aligned_cols=110  Identities=14%  Similarity=0.023  Sum_probs=70.5

Q ss_pred             CCeEEEecCCCCcchHHHHhc------------------CCCeEEEEeCC-----------hhHHHHHHHHhccCccccc
Q 024797           85 GDVVLDLACGKGGDLIKWDKA------------------KIGYYVGIDIA-----------EGSIEDCRTRYNGDADHHQ  135 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~------------------~~~~v~gvD~s-----------~~~~~~a~~~~~~~~~~~~  135 (262)
                      ..+|+|+|||+|..+..++..                  +.-.|+..|+.           +.+.+.+++...       
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g-------  125 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENG-------  125 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTC-------
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhcc-------
Confidence            468999999999988866542                  11247788877           333333322211       


Q ss_pred             cccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCH---------------------------------
Q 024797          136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE---------------------------------  182 (262)
Q Consensus       136 ~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~---------------------------------  182 (262)
                          ...+.-|+.+....+  -..++|++++|+|+++.++||+-..+                                 
T Consensus       126 ----~~~~~~f~~gvpgSF--y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Q  199 (384)
T 2efj_A          126 ----RKIGSCLIGAMPGSF--YSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQ  199 (384)
T ss_dssp             ----CCTTSEEEEECCSCT--TSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHH
T ss_pred             ----CCCCceEEEecchhh--hhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHH
Confidence                011234555544432  12234899999999999999873211                                 


Q ss_pred             --HHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          183 --ARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       183 --~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                        .|...+|+..++.|+|||++++++.
T Consensus       200 f~~D~~~FL~~Ra~eL~pGG~mvl~~~  226 (384)
T 2efj_A          200 FTKDFTTFLRIHSEELISRGRMLLTFI  226 (384)
T ss_dssp             HHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence              1334458888999999999999874

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.54  E-value=4.3e-07  Score=81.74  Aligned_cols=137  Identities=16%  Similarity=0.123  Sum_probs=90.0

Q ss_pred             cCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc---C-----------CCeEEEEeCChhHHHHHHH
Q 024797           60 ASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---K-----------IGYYVGIDIAEGSIEDCRT  125 (262)
Q Consensus        60 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~-----------~~~v~gvD~s~~~~~~a~~  125 (262)
                      .+..+.++.+...+   +..+.+.++.+|+|.+||+|.++......   .           ...++|+|+++.+...|+.
T Consensus       196 ~GqfyTP~~Vv~lm---v~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~m  272 (530)
T 3ufb_A          196 SGEFYTPRPVVRFM---VEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQM  272 (530)
T ss_dssp             CCCCCCCHHHHHHH---HHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHH
T ss_pred             CceECCcHHHHHHH---HHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHH
Confidence            46677777775554   44455677889999999999998765431   1           2359999999999999988


Q ss_pred             HhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccC------------CCHHHHHHHHHHHH
Q 024797          126 RYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW------------STEARARRALANVS  193 (262)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~------------~~~~~~~~~l~~~~  193 (262)
                      ++--.+.         ....+.++|....+..... +..+||+|+++--+.--+            ...+....++..+.
T Consensus       273 Nl~lhg~---------~~~~I~~~dtL~~~~~~~~-~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l  342 (530)
T 3ufb_A          273 NLLLHGL---------EYPRIDPENSLRFPLREMG-DKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIM  342 (530)
T ss_dssp             HHHHHTC---------SCCEEECSCTTCSCGGGCC-GGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHH
T ss_pred             HHHhcCC---------ccccccccccccCchhhhc-ccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHH
Confidence            7652211         1245667776554432111 345799999986442110            11112245677788


Q ss_pred             hccC-------CCcEEEEEeCCh
Q 024797          194 ALLR-------PGGTFIGTMPDA  209 (262)
Q Consensus       194 ~~L~-------~gG~li~~~~~~  209 (262)
                      +.|+       +||++.+.+|+.
T Consensus       343 ~~Lk~~~~~l~~gGr~avVlP~g  365 (530)
T 3ufb_A          343 RKLKRPGHGSDNGGRAAVVVPNG  365 (530)
T ss_dssp             HHBCCTTSSSSSCCEEEEEEEHH
T ss_pred             HHhhhhhhccCCCceEEEEecch
Confidence            8776       799999988864

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=98.51  E-value=3.3e-07  Score=75.00  Aligned_cols=110  Identities=17%  Similarity=0.184  Sum_probs=68.7

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|||+||++|.++..+++. +...|+|+|+...+...... .          .....++.....++....+    
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~----------~~~~~~iv~~~~~~di~~l----  143 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-M----------QTLGWNIVKFKDKSNVFTM----  143 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-C----------CBTTGGGEEEECSCCTTTS----
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-c----------cccCCceEEeecCceeeec----
Confidence            457889999999999999998763 45568999997643110000 0          0001122222322222222    


Q ss_pred             CCCCCeeEEEEcccccccCC---CHHHHHHHHHHHHhccCCC-cEEEEEeCC
Q 024797          161 ADDAPFDICSCQFAMHYSWS---TEARARRALANVSALLRPG-GTFIGTMPD  208 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~---~~~~~~~~l~~~~~~L~~g-G~li~~~~~  208 (262)
                       +.+++|+|++..+.+ .-.   +......++.-+.++|+|| |.|++.+..
T Consensus       144 -~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          144 -PTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             -CCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             -CCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence             467899999988766 210   1111234577788999999 999999876

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.49  E-value=1.2e-07  Score=77.45  Aligned_cols=92  Identities=9%  Similarity=-0.058  Sum_probs=62.0

Q ss_pred             HhccCC--CeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccC-CCCCeEEEeCccccccc
Q 024797           80 LYARRG--DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKK-FSFPARLICGDCYEVHL  156 (262)
Q Consensus        80 ~~~~~~--~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~v~~~~~d~~~~~~  156 (262)
                      +...++  .+|||+|||+|..+..++..+. +|+++|+++.+++.+++.+..... +....+ ...+++++++|+.++..
T Consensus        82 l~l~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~-~~~~~~~l~~~i~~~~~D~~~~L~  159 (258)
T 2oyr_A           82 VGIKGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYA-DAEIGGWLQERLQLIHASSLTALT  159 (258)
T ss_dssp             TTCBTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHH-CTTTHHHHHHHEEEEESCHHHHST
T ss_pred             hcccCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHh-hHhhhhhhhcCEEEEECCHHHHHH
Confidence            334566  8999999999999999887644 799999999887776665431100 000001 12358999999876421


Q ss_pred             ccccCCCCCeeEEEEcccccc
Q 024797          157 DKVLADDAPFDICSCQFAMHY  177 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~  177 (262)
                      .    ...+||+|++.-.+.+
T Consensus       160 ~----~~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          160 D----ITPRPQVVYLDPMFPH  176 (258)
T ss_dssp             T----CSSCCSEEEECCCCCC
T ss_pred             h----CcccCCEEEEcCCCCC
Confidence            0    1246999999877754

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=98.48  E-value=6.1e-07  Score=71.87  Aligned_cols=108  Identities=21%  Similarity=0.203  Sum_probs=65.7

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCe---EEEeC-cccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA---RLICG-DCYEVH  155 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v---~~~~~-d~~~~~  155 (262)
                      ...++.+|||+||++|..+...+.. ..+.|.|.++..+. .     ...       .......+   .+.++ |+.++ 
T Consensus        70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-----~~P-------~~~~~~Gv~~i~~~~G~Df~~~-  135 (269)
T 2px2_A           70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-----EEP-------MLMQSYGWNIVTMKSGVDVFYK-  135 (269)
T ss_dssp             SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-----CCC-------CCCCSTTGGGEEEECSCCGGGS-
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-----cCC-------CcccCCCceEEEeeccCCccCC-
Confidence            4678999999999999999987653 13333444443321 0     000       00000223   45557 98774 


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHH---HHHHHHHhccCCCc-EEEEEeCCh
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARAR---RALANVSALLRPGG-TFIGTMPDA  209 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~---~~l~~~~~~L~~gG-~li~~~~~~  209 (262)
                            +..++|+|+|..+-. .-...-|..   .+|.-+.++|+||| .+++.+-..
T Consensus       136 ------~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg  186 (269)
T 2px2_A          136 ------PSEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP  186 (269)
T ss_dssp             ------CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred             ------CCCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence                  356899999988654 211111221   25777889999999 899888654

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.43  E-value=1.8e-06  Score=70.43  Aligned_cols=126  Identities=19%  Similarity=0.209  Sum_probs=78.5

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC-cc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DC  151 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~  151 (262)
                      ..+.......++.+|||+||++|.++...+. .+...|+|+|+-..-.+.- .....+        . ...|.++.+ |+
T Consensus        84 ~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql--------~-w~lV~~~~~~Dv  153 (321)
T 3lkz_A           84 RWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSY--------G-WNIVTMKSGVDV  153 (321)
T ss_dssp             HHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBT--------T-GGGEEEECSCCT
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhc--------C-CcceEEEeccCH
Confidence            3344444557888999999999999997665 3455799999976311000 000000        0 112778877 87


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHH---HHHHHHHHhccCCC-cEEEEEeCCh--HHHHHHHh
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARA---RRALANVSALLRPG-GTFIGTMPDA--NVIIKKLR  217 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~---~~~l~~~~~~L~~g-G~li~~~~~~--~~~~~~~~  217 (262)
                      ..++       ..++|+|+|..+ .......-+.   ..+|.-+-++|++| |-+++.+-.+  ..+++.+.
T Consensus       154 ~~l~-------~~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~  217 (321)
T 3lkz_A          154 FYRP-------SECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCPYMPKVIEKME  217 (321)
T ss_dssp             TSSC-------CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHH
T ss_pred             hhCC-------CCCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCCCChHHHHHHH
Confidence            6664       366999999887 4321111122   23677778999998 8999888655  54444443

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.41  E-value=1.7e-06  Score=73.50  Aligned_cols=73  Identities=12%  Similarity=0.136  Sum_probs=56.8

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..+|.+|||+||++|.++..+++.+ +.|++||+.+ |-.....               ..+|+++++|+..+..     
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg-~~V~aVD~~~-l~~~l~~---------------~~~V~~~~~d~~~~~~-----  266 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRN-MWVYSVDNGP-MAQSLMD---------------TGQVTWLREDGFKFRP-----  266 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTT-CEEEEECSSC-CCHHHHT---------------TTCEEEECSCTTTCCC-----
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCC-CEEEEEEhhh-cChhhcc---------------CCCeEEEeCccccccC-----
Confidence            4689999999999999999987654 5899999875 3222211               3459999999988764     


Q ss_pred             CCCCeeEEEEccccc
Q 024797          162 DDAPFDICSCQFAMH  176 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~  176 (262)
                      +.++||+|+|..+..
T Consensus       267 ~~~~~D~vvsDm~~~  281 (375)
T 4auk_A          267 TRSNISWMVCDMVEK  281 (375)
T ss_dssp             CSSCEEEEEECCSSC
T ss_pred             CCCCcCEEEEcCCCC
Confidence            467899999998774

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.39  E-value=1.3e-06  Score=74.34  Aligned_cols=113  Identities=12%  Similarity=0.053  Sum_probs=78.9

Q ss_pred             CCeEEEecCCCCcchHHHHhc---------------CC--CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEE
Q 024797           85 GDVVLDLACGKGGDLIKWDKA---------------KI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI  147 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~---------------~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~  147 (262)
                      .-+|+|+||++|..+..++..               ..  -.|+..|+........-+.+.... .       ..+.-|+
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~-------~~~~~f~  123 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-D-------VDGVCFI  123 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-S-------CTTCEEE
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-c-------cCCCEEE
Confidence            357999999999987765432               11  248899999999888877765311 0       0023444


Q ss_pred             eCcccccccccccCCCCCeeEEEEcccccccCCC-----------------------------HHHHHHHHHHHHhccCC
Q 024797          148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST-----------------------------EARARRALANVSALLRP  198 (262)
Q Consensus       148 ~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-----------------------------~~~~~~~l~~~~~~L~~  198 (262)
                      .+....+  -..++|++++|+|+++.++||+-..                             ..|...+|+..++.|+|
T Consensus       124 ~gvpgSF--y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p  201 (359)
T 1m6e_X          124 NGVPGSF--YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP  201 (359)
T ss_dssp             EEEESCS--SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT
T ss_pred             Eecchhh--hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            5443332  1222388999999999999987321                             24667789999999999


Q ss_pred             CcEEEEEeC
Q 024797          199 GGTFIGTMP  207 (262)
Q Consensus       199 gG~li~~~~  207 (262)
                      ||++++++.
T Consensus       202 GG~mvl~~~  210 (359)
T 1m6e_X          202 GGRMVLTIL  210 (359)
T ss_dssp             TCEEEEEEE
T ss_pred             CceEEEEEe
Confidence            999999873

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.34  E-value=6.4e-06  Score=67.87  Aligned_cols=109  Identities=15%  Similarity=0.086  Sum_probs=78.0

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc------CCCeEEEEeCChh--------------------------HHHHHHHHhccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEG--------------------------SIEDCRTRYNGD  130 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~~--------------------------~~~~a~~~~~~~  130 (262)
                      ..+..|||+|+..|..+..++..      ..++++++|..+.                          .++.+++++...
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            34679999999999877766542      2567999996432                          456677776632


Q ss_pred             ccccccccCC-CCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          131 ADHHQRRKKF-SFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       131 ~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                              ++ ..+++++.+|+.+.- ..  .+.++||+|++.....      +.....+..+...|+|||++++....
T Consensus       185 --------gl~~~~I~li~Gda~etL-~~--~~~~~~d~vfIDaD~y------~~~~~~Le~~~p~L~pGGiIv~DD~~  246 (282)
T 2wk1_A          185 --------DLLDEQVRFLPGWFKDTL-PT--APIDTLAVLRMDGDLY------ESTWDTLTNLYPKVSVGGYVIVDDYM  246 (282)
T ss_dssp             --------TCCSTTEEEEESCHHHHS-TT--CCCCCEEEEEECCCSH------HHHHHHHHHHGGGEEEEEEEEESSCT
T ss_pred             --------CCCcCceEEEEeCHHHHH-hh--CCCCCEEEEEEcCCcc------ccHHHHHHHHHhhcCCCEEEEEcCCC
Confidence                    33 267999999986531 11  1357899999887542      44567899999999999999996653

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.31  E-value=5.1e-06  Score=65.64  Aligned_cols=113  Identities=18%  Similarity=0.227  Sum_probs=73.6

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-CCeEEEeC-cc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FPARLICG-DC  151 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~v~~~~~-d~  151 (262)
                      .+.......++.+|||+||++|.++...+. .+...|+|+|+-..-.+.     +    ..  ...++ ..++|.++ |+
T Consensus        69 ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-----P----~~--~~s~gwn~v~fk~gvDv  137 (267)
T 3p8z_A           69 WFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-----P----VP--MSTYGWNIVKLMSGKDV  137 (267)
T ss_dssp             HHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-----C----CC--CCCTTTTSEEEECSCCG
T ss_pred             HHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-----c----ch--hhhcCcCceEEEeccce
Confidence            344444557888999999999999997765 345579999997632100     0    00  00111 34889999 98


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHH-HH---HHHHHHHHhccCCCcEEEEEeCC
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEA-RA---RRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~-~~---~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ..++       ..++|+|+|..+=..  .++. +.   ..+|+-+-++|++ |-+++.+-.
T Consensus       138 ~~~~-------~~~~DtllcDIgeSs--~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~  188 (267)
T 3p8z_A          138 FYLP-------PEKCDTLLCDIGESS--PSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLN  188 (267)
T ss_dssp             GGCC-------CCCCSEEEECCCCCC--SCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESC
T ss_pred             eecC-------CccccEEEEecCCCC--CChhhhhhHHHHHHHHHHHhccc-CCEEEEEcc
Confidence            6654       467999999876532  1211 22   3367777899998 788888743

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=98.29  E-value=1.1e-06  Score=71.58  Aligned_cols=121  Identities=12%  Similarity=0.010  Sum_probs=69.9

Q ss_pred             cCCCeEEEecCCCCcchHHHHh--------cC-----CCeEEEEeCCh---hHHH-----------HHHHHhccCcccc-
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK--------AK-----IGYYVGIDIAE---GSIE-----------DCRTRYNGDADHH-  134 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~--------~~-----~~~v~gvD~s~---~~~~-----------~a~~~~~~~~~~~-  134 (262)
                      .++.+|||+|+|+|..+..+++        .+     ...++++|..+   +++.           .|++.+....... 
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            3557999999999987776543        22     13799999876   4444           3444332110000 


Q ss_pred             ----ccccCCCCCeEEEeCccccc-ccccccCCCCCeeEEEEcccccccCCCHH-HHHHHHHHHHhccCCCcEEEEEe
Q 024797          135 ----QRRKKFSFPARLICGDCYEV-HLDKVLADDAPFDICSCQFAMHYSWSTEA-RARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       135 ----~~~~~~~~~v~~~~~d~~~~-~~~~~~~~~~~fD~V~~~~~l~~~~~~~~-~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                          ..-.....+++++.+|+.+. +.... .....||+|+....-.-.  .++ -...++..+.+.|+|||+|+..+
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~-~~~~~~D~iflD~fsp~~--~p~lw~~~~l~~l~~~L~pGG~l~tys  213 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDD-SLNQKVDAWFLDGFAPAK--NPDMWTQNLFNAMARLARPGGTLATFT  213 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCG-GGTTCEEEEEECSSCTTT--CGGGCCHHHHHHHHHHEEEEEEEEESC
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhccc-ccCCeEEEEEECCCCccc--ChhhcCHHHHHHHHHHcCCCcEEEEEe
Confidence                00001124578999998763 32100 001379999986421100  111 03578999999999999988533

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.26  E-value=1.8e-06  Score=63.25  Aligned_cols=87  Identities=15%  Similarity=0.022  Sum_probs=56.5

Q ss_pred             cCCCeEEEecCCCC-cchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKG-GDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G-~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||+|||.| +.+..+++...-.|+++|+++.+++                        +++.|+++....    
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~------------------------~v~dDiF~P~~~----   85 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG------------------------IVRDDITSPRME----   85 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT------------------------EECCCSSSCCHH----
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc------------------------eEEccCCCCccc----
Confidence            35679999999999 5777776534447999999985533                        578888774320    


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .-..||+|+....-       .+....+.++.+.+  |.-++|..
T Consensus        86 ~Y~~~DLIYsirPP-------~El~~~i~~lA~~v--~adliI~p  121 (153)
T 2k4m_A           86 IYRGAALIYSIRPP-------AEIHSSLMRVADAV--GARLIIKP  121 (153)
T ss_dssp             HHTTEEEEEEESCC-------TTTHHHHHHHHHHH--TCEEEEEC
T ss_pred             ccCCcCEEEEcCCC-------HHHHHHHHHHHHHc--CCCEEEEc
Confidence            01489999875532       33444444554433  45666653

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=98.04  E-value=1.4e-05  Score=65.06  Aligned_cols=100  Identities=14%  Similarity=0.161  Sum_probs=66.6

Q ss_pred             hccCCCeEEEecC------CCCcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           81 YARRGDVVLDLAC------GKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        81 ~~~~~~~vLDiGc------G~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      ..+.+.+|||+|+      .+|.....-. .+. +.++++|+.+-.        .            .. -.++++|+..
T Consensus       106 ~vp~gmrVLDLGA~s~kg~APGS~VLr~~-~p~g~~VVavDL~~~~--------s------------da-~~~IqGD~~~  163 (344)
T 3r24_A          106 AVPYNMRVIHFGAGSDKGVAPGTAVLRQW-LPTGTLLVDSDLNDFV--------S------------DA-DSTLIGDCAT  163 (344)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHHHHHHHH-SCTTCEEEEEESSCCB--------C------------SS-SEEEESCGGG
T ss_pred             eecCCCEEEeCCCCCCCCCCCcHHHHHHh-CCCCcEEEEeeCcccc--------c------------CC-CeEEEccccc
Confidence            3457899999997      5566322211 333 489999998721        0            11 2459999876


Q ss_pred             cccccccCCCCCeeEEEEccccccc--CC-----CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYS--WS-----TEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~--~~-----~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ..      ..++||+|++.++-.-.  .+     ...-.+.++.-+.++|+|||.|++.+-.
T Consensus       164 ~~------~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQ  219 (344)
T 3r24_A          164 VH------TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITE  219 (344)
T ss_dssp             EE------ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             cc------cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEec
Confidence            54      35889999987632211  00     1224678888899999999999998753

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.03  E-value=1.4e-05  Score=66.91  Aligned_cols=88  Identities=15%  Similarity=0.087  Sum_probs=65.1

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      ++.++..+.+.++..++|..||.|.++..+++.  +.++|+|+|.++.+++.|+ ++.            ..++++++++
T Consensus        46 l~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~------------~~Rv~lv~~n  112 (347)
T 3tka_A           46 LDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID------------DPRFSIIHGP  112 (347)
T ss_dssp             THHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC------------CTTEEEEESC
T ss_pred             HHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc------------CCcEEEEeCC
Confidence            344666666788999999999999999998874  5678999999999999984 442            3568999999


Q ss_pred             cccccccc-ccCCCCCeeEEEEcc
Q 024797          151 CYEVHLDK-VLADDAPFDICSCQF  173 (262)
Q Consensus       151 ~~~~~~~~-~~~~~~~fD~V~~~~  173 (262)
                      +.++...- ...-.+++|.|+...
T Consensus       113 F~~l~~~L~~~g~~~~vDgILfDL  136 (347)
T 3tka_A          113 FSALGEYVAERDLIGKIDGILLDL  136 (347)
T ss_dssp             GGGHHHHHHHTTCTTCEEEEEEEC
T ss_pred             HHHHHHHHHhcCCCCcccEEEECC
Confidence            87764210 000113699999754

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.97  E-value=1.4e-05  Score=66.58  Aligned_cols=54  Identities=22%  Similarity=0.332  Sum_probs=43.6

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      +..++... ..+++.|||++||+|..+..++..+ .+++|+|+++.+++.|++++.
T Consensus       225 ~~~~i~~~-~~~~~~vlD~f~GsGt~~~~a~~~g-~~~~g~e~~~~~~~~a~~r~~  278 (297)
T 2zig_A          225 AERLVRMF-SFVGDVVLDPFAGTGTTLIAAARWG-RRALGVELVPRYAQLAKERFA  278 (297)
T ss_dssp             HHHHHHHH-CCTTCEEEETTCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHh-CCCCCEEEECCCCCCHHHHHHHHcC-CeEEEEeCCHHHHHHHHHHHH
Confidence            44444443 3688999999999999888776544 489999999999999999876

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=97.57  E-value=0.0023  Score=53.46  Aligned_cols=114  Identities=12%  Similarity=0.000  Sum_probs=80.3

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc----
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL----  160 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~----  160 (262)
                      ...|+++|||-=.....+.......++-+| -+..++..++.+.+.+..      ...+..++.+|+.+ .+...+    
T Consensus       103 ~~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~------~~~~~~~v~~Dl~d-~~~~~l~~~g  174 (310)
T 2uyo_A          103 IRQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVT------PTADRREVPIDLRQ-DWPPALRSAG  174 (310)
T ss_dssp             CCEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCC------CSSEEEEEECCTTS-CHHHHHHHTT
T ss_pred             CCeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCC------CCCCeEEEecchHh-hHHHHHHhcc
Confidence            457999999975443333211234789999 488999888888632211      24457889999876 432111    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +....--++++-++++|+  +.+....+++.+...+.||+.++++...
T Consensus       175 ~d~~~Pt~~i~Egvl~Yl--~~~~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          175 FDPSARTAWLAEGLLMYL--PATAQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             CCTTSCEEEEECSCGGGS--CHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCCCCCEEEEEechHhhC--CHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence            123445788888999998  7788999999999999999999998754

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.55  E-value=9.7e-05  Score=60.41  Aligned_cols=107  Identities=7%  Similarity=-0.133  Sum_probs=78.1

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      .+..+||+-+|+|.++.+++. +..+++.+|.++..++..++++..           ..++++++.|....- .....+.
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS-~~d~~vfvE~~~~a~~~L~~Nl~~-----------~~~~~V~~~D~~~~L-~~l~~~~  157 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLR-SQDRLYLCELHPTEYNFLLKLPHF-----------NKKVYVNHTDGVSKL-NALLPPP  157 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSC-TTSEEEEECCSHHHHHHHTTSCCT-----------TSCEEEECSCHHHHH-HHHCSCT
T ss_pred             cCCCceeEeCCcHHHHHHHcC-CCCeEEEEeCCHHHHHHHHHHhCc-----------CCcEEEEeCcHHHHH-HHhcCCC
Confidence            456799999999999999876 447899999999999999888752           356899999975421 1111144


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHh--ccCCCcEEEEEeC
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMP  207 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~--~L~~gG~li~~~~  207 (262)
                      .+||+|++.-....-    .+..+++..+.+  .+.++|.+++=-|
T Consensus       158 ~~fdLVfiDPPYe~k----~~~~~vl~~L~~~~~r~~~Gi~v~WYP  199 (283)
T 2oo3_A          158 EKRGLIFIDPSYERK----EEYKEIPYAIKNAYSKFSTGLYCVWYP  199 (283)
T ss_dssp             TSCEEEEECCCCCST----THHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred             CCccEEEECCCCCCC----cHHHHHHHHHHHhCccCCCeEEEEEEe
Confidence            579999998766521    356666666655  4578999877544

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.50  E-value=0.0027  Score=53.52  Aligned_cols=120  Identities=14%  Similarity=0.103  Sum_probs=81.3

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCcccc-------cc-----ccCCCCCeEEEeC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHH-------QR-----RKKFSFPARLICG  149 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-------~~-----~~~~~~~v~~~~~  149 (262)
                      .+...|+.+|||.......+... +...++-||. +++++.-++.+.+.+...       ..     ......+..++.+
T Consensus        96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~  174 (334)
T 1rjd_A           96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  174 (334)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence            35678999999999887777553 4446888888 778777777765431100       00     0001356889999


Q ss_pred             cccccccc----cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE-EEe
Q 024797          150 DCYEVHLD----KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI-GTM  206 (262)
Q Consensus       150 d~~~~~~~----~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li-~~~  206 (262)
                      |+.+....    ..........++++-+++.|+  +++...++++.+.+.. |+|.++ +..
T Consensus       175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL--~~~~~~~ll~~ia~~~-~~~~~v~~e~  233 (334)
T 1rjd_A          175 DLNDITETTRLLDVCTKREIPTIVISECLLCYM--HNNESQLLINTIMSKF-SHGLWISYDP  233 (334)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS--CHHHHHHHHHHHHHHC-SSEEEEEEEE
T ss_pred             CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCC--CHHHHHHHHHHHHhhC-CCcEEEEEec
Confidence            99875431    111123567899999999999  8899999999999987 666654 443

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=97.50  E-value=3.9e-05  Score=80.30  Aligned_cols=103  Identities=16%  Similarity=0.113  Sum_probs=53.4

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcC------CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-c
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAK------IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-H  155 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~  155 (262)
                      .+..+|||+|.|+|..+..++..-      ...++.+|+|+...+.|++++..            ..+.....|..+. +
T Consensus      1239 ~~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~------------~di~~~~~d~~~~~~ 1306 (2512)
T 2vz8_A         1239 SPKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQ------------LHVTQGQWDPANPAP 1306 (2512)
T ss_dssp             SSEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHH------------HTEEEECCCSSCCCC
T ss_pred             CCCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhh------------ccccccccccccccc
Confidence            356799999999998776654421      23689999999888888877651            1122222232221 1


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +     ....||+|++.+++|-.    .+....+.++++.|+|||++++..
T Consensus      1307 ~-----~~~~ydlvia~~vl~~t----~~~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1307 G-----SLGKADLLVCNCALATL----GDPAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             ----------CCEEEEECC------------------------CCEEEEEE
T ss_pred             C-----CCCceeEEEEccccccc----ccHHHHHHHHHHhcCCCcEEEEEe
Confidence            1     24579999999999743    677889999999999999988754

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.49  E-value=0.00024  Score=57.87  Aligned_cols=54  Identities=22%  Similarity=0.311  Sum_probs=43.0

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      ++.++.. ...+++.|||..||+|..+....+. ..+++|+|+++.+++.|++++.
T Consensus       202 ~~~~i~~-~~~~~~~vlD~f~GsGtt~~~a~~~-gr~~ig~e~~~~~~~~~~~r~~  255 (260)
T 1g60_A          202 IERIIRA-SSNPNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLN  255 (260)
T ss_dssp             HHHHHHH-HCCTTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHH-hCCCCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHH
Confidence            3444433 3478899999999999888776544 4589999999999999999986

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.46  E-value=0.0004  Score=58.98  Aligned_cols=60  Identities=17%  Similarity=0.141  Sum_probs=49.8

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ++..|||||.|.|.++..++.. ...+|+++|+++.++...++...            ..+++++.+|+..+.
T Consensus        58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~------------~~~l~ii~~D~l~~~  118 (353)
T 1i4w_A           58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------------GSPLQILKRDPYDWS  118 (353)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------------TSSCEEECSCTTCHH
T ss_pred             CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhcc------------CCCEEEEECCccchh
Confidence            3589999999999999999874 45689999999999998887652            346899999997654

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.13  E-value=0.0038  Score=53.51  Aligned_cols=108  Identities=16%  Similarity=0.153  Sum_probs=70.8

Q ss_pred             CeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc---cCC
Q 024797           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV---LAD  162 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~  162 (262)
                      .++||+.||.|.++..+...+...+.++|+++.+++..+.++.              ...++++|+.++.....   ...
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~~--------------~~~~~~~DI~~~~~~~~~~~~~~   68 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP--------------RSLHVQEDVSLLNAEIIKGFFKN   68 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHCT--------------TSEEECCCGGGCCHHHHHHHHCS
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhCC--------------CCceEecChhhcCHHHHHhhccc
Confidence            4799999999999998877777678899999999998888765              26678899887643211   012


Q ss_pred             CCCeeEEEEcccccccCC----CH-HHHHHHHH---HHHhccCCCcEEEEEeC
Q 024797          163 DAPFDICSCQFAMHYSWS----TE-ARARRALA---NVSALLRPGGTFIGTMP  207 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~----~~-~~~~~~l~---~~~~~L~~gG~li~~~~  207 (262)
                      ...+|+|+...-.+-+-.    .. +....++.   ++.+.++|.-+++=.++
T Consensus        69 ~~~~D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P~~~v~ENV~  121 (376)
T 3g7u_A           69 DMPIDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYRLVSELQPLFFLAENVP  121 (376)
T ss_dssp             CCCCCEEEECCCCCTTC-------CHHHHHHHHHHHHHHHHHCCSEEEEEECT
T ss_pred             CCCeeEEEecCCCCCcccccCCCCCCchHHHHHHHHHHHHHhCCCEEEEecch
Confidence            467999998765443300    00 11223333   34455678655554444

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=97.01  E-value=0.041  Score=44.42  Aligned_cols=164  Identities=12%  Similarity=0.150  Sum_probs=90.8

Q ss_pred             cchhHHHHHHHHHhhhhccccHhhhhcCccccch-hHHHHHH--HHHHHHhccCCCeEEEecCCCCcchHHHHh------
Q 024797           34 ESTKVFARKVADHYSRRTNQTLEEREASPIIHLK-KLNNWIK--SVLVQLYARRGDVVLDLACGKGGDLIKWDK------  104 (262)
Q Consensus        34 ~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~------  104 (262)
                      .......+++.+.+.............-+.+..+ .+..++.  .+...+ ..-+..|+|+||-.|..+..++.      
T Consensus        17 ~~~~~~~~~l~~~~~~~~~~~~e~l~~~~~~~~~~~l~~~l~~~~l~~~i-~~vpG~ivE~GV~rG~S~~~~a~~~~~l~   95 (257)
T 3tos_A           17 PEETETTQRLTKLLTNSPIPTEELVNNLPLFLRRHQMTDLLSMDALYRQV-LDVPGVIMEFGVRFGRHLGTFAALRGVYE   95 (257)
T ss_dssp             HHHHHHHHHHHHHHHTCCSCGGGGGGCGGGGCCHHHHHHHHHHHHHHHHT-TTSCSEEEEECCTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhcCCCChHHHHHhHHhhhhHHHHHHHHHHHHHHHHh-hCCCCeEEEEecccCHHHHHHHHHHHHhc
Confidence            3445566777777766555444433333332221 2222222  112222 23456899999999987776543      


Q ss_pred             --cCCCeEEEEeCChhHHH------------------------HHHHHhccCccccccccCC-CCCeEEEeCcccccccc
Q 024797          105 --AKIGYYVGIDIAEGSIE------------------------DCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLD  157 (262)
Q Consensus       105 --~~~~~v~gvD~s~~~~~------------------------~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~  157 (262)
                        ....+++|+|.=+.+-+                        ..++.+..  ..+.+..+. ..+++++.+++.+.- +
T Consensus        96 ~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~--~~~~~~~g~~~~~i~li~G~~~dTL-~  172 (257)
T 3tos_A           96 PYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDA--HECSDFFGHVTQRSVLVEGDVRETV-P  172 (257)
T ss_dssp             TTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHH--HHTTSTTTTSCCSEEEEESCHHHHH-H
T ss_pred             ccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHH--HhhhhhcCCCCCcEEEEEecHHHHH-H
Confidence              13467999992221111                        01110000  000001122 367999999986531 1


Q ss_pred             cc--cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          158 KV--LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~--~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ..  ..+..+||+|.+..-. |     +.....+..+...|+|||++++...
T Consensus       173 ~~l~~~~~~~~dlv~ID~D~-Y-----~~t~~~le~~~p~l~~GGvIv~DD~  218 (257)
T 3tos_A          173 RYLAENPQTVIALAYFDLDL-Y-----EPTKAVLEAIRPYLTKGSIVAFDEL  218 (257)
T ss_dssp             HHHHHCTTCCEEEEEECCCC-H-----HHHHHHHHHHGGGEEEEEEEEESST
T ss_pred             HHHHhCCCCceEEEEEcCcc-c-----chHHHHHHHHHHHhCCCcEEEEcCC
Confidence            11  0145679999988853 2     4556788999999999999999765

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.84  E-value=0.0013  Score=55.81  Aligned_cols=76  Identities=18%  Similarity=0.203  Sum_probs=56.0

Q ss_pred             CCeEEEecCCCCcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ..+|||+.||.|.+...+...+  ...+.++|+++.+++..+.++..              ..++++|+.++.....  +
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~--------------~~~~~~Di~~~~~~~~--~   65 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH--------------TQLLAKTIEGITLEEF--D   65 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT--------------SCEECSCGGGCCHHHH--H
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc--------------cccccCCHHHccHhHc--C
Confidence            3579999999999999887666  44799999999999999988752              4467889877642111  1


Q ss_pred             CCCeeEEEEccccc
Q 024797          163 DAPFDICSCQFAMH  176 (262)
Q Consensus       163 ~~~fD~V~~~~~l~  176 (262)
                      ...+|+|+...-.+
T Consensus        66 ~~~~D~l~~gpPCq   79 (343)
T 1g55_A           66 RLSFDMILMSPPCQ   79 (343)
T ss_dssp             HHCCSEEEECCC--
T ss_pred             cCCcCEEEEcCCCc
Confidence            12689999876543

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.67  E-value=0.011  Score=49.62  Aligned_cols=69  Identities=19%  Similarity=0.168  Sum_probs=54.6

Q ss_pred             CeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCC
Q 024797           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP  165 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  165 (262)
                      .+|||+-||.|.+...+.+.+...+.++|+++.+++.-+.+..               ..++++|+.++...    .-..
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~---------------~~~~~~DI~~i~~~----~~~~   61 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS---------------AKLIKGDISKISSD----EFPK   61 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC---------------SEEEESCGGGCCGG----GSCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC---------------CCcccCChhhCCHh----hCCc
Confidence            3799999999999888876777678899999999999888765               45678998877543    1246


Q ss_pred             eeEEEEcc
Q 024797          166 FDICSCQF  173 (262)
Q Consensus       166 fD~V~~~~  173 (262)
                      +|+++...
T Consensus        62 ~D~l~ggp   69 (331)
T 3ubt_Y           62 CDGIIGGP   69 (331)
T ss_dssp             CSEEECCC
T ss_pred             ccEEEecC
Confidence            89998655

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.61  E-value=0.0044  Score=52.03  Aligned_cols=55  Identities=9%  Similarity=0.192  Sum_probs=43.2

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhcc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG  129 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~  129 (262)
                      ++.++. ....+++.|||..||+|..+...... ..+++|+|+++..++.+++++..
T Consensus       242 ~~~~i~-~~~~~~~~VlDpF~GsGtt~~aa~~~-gr~~ig~e~~~~~~~~~~~r~~~  296 (323)
T 1boo_A          242 PEFFIR-MLTEPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLD  296 (323)
T ss_dssp             HHHHHH-HHCCTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHHHH-HhCCCCCEEEECCCCCCHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence            444443 33578999999999999877765443 45899999999999999999873

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.60  E-value=0.0066  Score=51.02  Aligned_cols=71  Identities=18%  Similarity=0.171  Sum_probs=54.3

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      +.++||+.||.|.+...+...+...+.++|+++.+++..+.++..              .  .++|+.++....    -.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~--------------~--~~~Di~~~~~~~----~~   70 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE--------------K--PEGDITQVNEKT----IP   70 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC--------------C--CBSCGGGSCGGG----SC
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCC--------------C--CcCCHHHcCHhh----CC
Confidence            468999999999999988777777799999999999999888752              1  167877664321    13


Q ss_pred             CeeEEEEcccc
Q 024797          165 PFDICSCQFAM  175 (262)
Q Consensus       165 ~fD~V~~~~~l  175 (262)
                      .+|+|+...-.
T Consensus        71 ~~D~l~~gpPC   81 (327)
T 2c7p_A           71 DHDILCAGFPC   81 (327)
T ss_dssp             CCSEEEEECCC
T ss_pred             CCCEEEECCCC
Confidence            58999976533

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.42  E-value=0.0075  Score=51.49  Aligned_cols=99  Identities=13%  Similarity=0.113  Sum_probs=62.6

Q ss_pred             HhccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--
Q 024797           80 LYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--  155 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--  155 (262)
                      ....++++||-+|||. |..+..+++. +...|+++|.+++.++.+++.-.               -.++..+-.++.  
T Consensus       186 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi~~~~~~~~~~  250 (371)
T 1f8f_A          186 LKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA---------------THVINSKTQDPVAA  250 (371)
T ss_dssp             TCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC---------------SEEEETTTSCHHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC---------------CEEecCCccCHHHH
Confidence            3456889999999876 6666666663 44479999999999998876432               111211111110  


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ....  ..+.+|+|+-....          ...+..+.+.|+++|++++.
T Consensus       251 ~~~~--~~gg~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          251 IKEI--TDGGVNFALESTGS----------PEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             HHHH--TTSCEEEEEECSCC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHh--cCCCCcEEEECCCC----------HHHHHHHHHHHhcCCEEEEe
Confidence            0011  12379999854432          23567788999999998764

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.34  E-value=0.0076  Score=50.48  Aligned_cols=56  Identities=18%  Similarity=0.109  Sum_probs=42.7

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCCh---hHHHHHHHHhcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAE---GSIEDCRTRYNG  129 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~---~~~~~a~~~~~~  129 (262)
                      .++.++.. ...+++.|||..||+|..+......+ .+++|+|+++   ..++.+++++..
T Consensus       231 l~~~~i~~-~~~~~~~vlDpF~GsGtt~~aa~~~~-r~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          231 VIERLVRA-LSHPGSTVLDFFAGSGVTARVAIQEG-RNSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             HHHHHHHH-HSCTTCEEEETTCTTCHHHHHHHHHT-CEEEEEESSTHHHHHHHHHHHHC--
T ss_pred             HHHHHHHH-hCCCCCEEEecCCCCCHHHHHHHHcC-CcEEEEECCccHHHHHHHHHHHHHH
Confidence            34444433 35789999999999998777665444 4899999999   999999999863

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.13  E-value=0.015  Score=48.86  Aligned_cols=101  Identities=14%  Similarity=0.082  Sum_probs=62.9

Q ss_pred             HHhccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      .....++++||-.|+|. |..+..+++....+|+++|.+++.++.+++.-.               -..+...-.+... 
T Consensus       161 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~~i~~~~~~~~~-  224 (340)
T 3s2e_A          161 VTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGA---------------EVAVNARDTDPAA-  224 (340)
T ss_dssp             TTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC---------------SEEEETTTSCHHH-
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCC---------------CEEEeCCCcCHHH-
Confidence            33457899999999875 666666766544489999999999988876422               1111111111100 


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ......+.+|+|+....-          ...+..+.+.|+++|.+++.
T Consensus       225 ~~~~~~g~~d~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          225 WLQKEIGGAHGVLVTAVS----------PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             HHHHHHSSEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHhCCCCCEEEEeCCC----------HHHHHHHHHHhccCCEEEEe
Confidence            000012378998754321          23567788999999998764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.09  E-value=0.018  Score=48.62  Aligned_cols=93  Identities=16%  Similarity=0.066  Sum_probs=62.4

Q ss_pred             HHhccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      .....++++||-+|+|. |..+..+++....+|+++|.+++.++.+++.-.               -.++ .+...  + 
T Consensus       171 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~v~-~~~~~--~-  231 (348)
T 3two_A          171 FSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGV---------------KHFY-TDPKQ--C-  231 (348)
T ss_dssp             HTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTC---------------SEEE-SSGGG--C-
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCC---------------Ceec-CCHHH--H-
Confidence            34567899999999875 666666666444489999999999988876322               1122 33221  1 


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                           ...+|+|+-...-.          ..+....+.|+++|.+++.
T Consensus       232 -----~~~~D~vid~~g~~----------~~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          232 -----KEELDFIISTIPTH----------YDLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             -----CSCEEEEEECCCSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             -----hcCCCEEEECCCcH----------HHHHHHHHHHhcCCEEEEE
Confidence                 12799998644332          1346688899999998764

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.04  E-value=0.015  Score=48.02  Aligned_cols=75  Identities=23%  Similarity=0.255  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCe--EEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGY--YVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~--v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ...+++|+.||.|.+...+...+...  +.++|+++.+++..+.+..              ...++.+|+.++...... 
T Consensus        15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~--------------~~~~~~~DI~~i~~~~i~-   79 (295)
T 2qrv_A           15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ--------------GKIMYVGDVRSVTQKHIQ-   79 (295)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT--------------TCEEEECCGGGCCHHHHH-
T ss_pred             CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC--------------CCceeCCChHHccHHHhc-
Confidence            45689999999999988887666655  7999999999888777654              145678898876532211 


Q ss_pred             CCCCeeEEEEcc
Q 024797          162 DDAPFDICSCQF  173 (262)
Q Consensus       162 ~~~~fD~V~~~~  173 (262)
                      ..+.+|+++...
T Consensus        80 ~~~~~Dll~ggp   91 (295)
T 2qrv_A           80 EWGPFDLVIGGS   91 (295)
T ss_dssp             HTCCCSEEEECC
T ss_pred             ccCCcCEEEecC
Confidence            124689999765

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.96  E-value=0.021  Score=48.35  Aligned_cols=100  Identities=15%  Similarity=0.075  Sum_probs=61.9

Q ss_pred             HHhccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc---ccc
Q 024797           79 QLYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD---CYE  153 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d---~~~  153 (262)
                      .....++++||-+|+|. |..+..+++. +..+|+++|.+++.++.+++.-.               -.++..+   ..+
T Consensus       166 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi~~~~~~~~~  230 (356)
T 1pl8_A          166 RGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA---------------DLVLQISKESPQE  230 (356)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC---------------SEEEECSSCCHHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC---------------CEEEcCcccccch
Confidence            34567899999999875 6666666664 34489999999998888875322               1112111   011


Q ss_pred             c--ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          154 V--HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       154 ~--~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .  ...... . ..+|+|+-...-          ...+....+.|+++|+++..
T Consensus       231 ~~~~i~~~~-~-~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  272 (356)
T 1pl8_A          231 IARKVEGQL-G-CKPEVTIECTGA----------EASIQAGIYATRSGGTLVLV  272 (356)
T ss_dssp             HHHHHHHHH-T-SCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHHHHHh-C-CCCCEEEECCCC----------hHHHHHHHHHhcCCCEEEEE
Confidence            0  000011 2 569999854432          13457788999999998764

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.96  E-value=0.037  Score=47.16  Aligned_cols=102  Identities=13%  Similarity=0.019  Sum_probs=63.5

Q ss_pred             HHHhccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe---Cccc
Q 024797           78 VQLYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC---GDCY  152 (262)
Q Consensus        78 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~---~d~~  152 (262)
                      ......++++||-.|+|. |..+..+++. +...|+++|.+++.++.+++.-.               ...+.   .|..
T Consensus       176 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi~~~~~~~~  240 (370)
T 4ej6_A          176 DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGA---------------TATVDPSAGDVV  240 (370)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC---------------SEEECTTSSCHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC---------------CEEECCCCcCHH
Confidence            444567899999999865 5556666654 44489999999999988877432               11111   1111


Q ss_pred             ccccccc-cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          153 EVHLDKV-LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       153 ~~~~~~~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      +. .... ....+.+|+|+-....          ...+..+.+.|++||.+++.
T Consensus       241 ~~-i~~~~~~~~gg~Dvvid~~G~----------~~~~~~~~~~l~~~G~vv~~  283 (370)
T 4ej6_A          241 EA-IAGPVGLVPGGVDVVIECAGV----------AETVKQSTRLAKAGGTVVIL  283 (370)
T ss_dssp             HH-HHSTTSSSTTCEEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HH-HHhhhhccCCCCCEEEECCCC----------HHHHHHHHHHhccCCEEEEE
Confidence            00 0000 0023479999854322          23567788999999998764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=95.88  E-value=0.055  Score=39.12  Aligned_cols=103  Identities=13%  Similarity=0.048  Sum_probs=63.2

Q ss_pred             CCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        85 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ..+|+=+|||. |..+...+......|+++|.+++.++.+++. .               +.++.+|..+....... .-
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~-g---------------~~~i~gd~~~~~~l~~a-~i   69 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRER-G---------------VRAVLGNAANEEIMQLA-HL   69 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-T---------------CEEEESCTTSHHHHHHT-TG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHc-C---------------CCEEECCCCCHHHHHhc-Cc
Confidence            35799999975 4444433333444799999999988877652 2               66788887654321110 12


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      ...|+|++...-      ... ...+-...+.+.|+..++....+...
T Consensus        70 ~~ad~vi~~~~~------~~~-n~~~~~~a~~~~~~~~iiar~~~~~~  110 (140)
T 3fwz_A           70 ECAKWLILTIPN------GYE-AGEIVASARAKNPDIEIIARAHYDDE  110 (140)
T ss_dssp             GGCSEEEECCSC------HHH-HHHHHHHHHHHCSSSEEEEEESSHHH
T ss_pred             ccCCEEEEECCC------hHH-HHHHHHHHHHHCCCCeEEEEECCHHH
Confidence            467888764322      122 22233456667788888887777654

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.82  E-value=0.018  Score=47.59  Aligned_cols=62  Identities=24%  Similarity=0.230  Sum_probs=42.6

Q ss_pred             CeEEEeCccccc-ccccccCCCCCeeEEEEcccccccCC--C--------------HHHHHHHHHHHHhccCCCcEEEEE
Q 024797          143 PARLICGDCYEV-HLDKVLADDAPFDICSCQFAMHYSWS--T--------------EARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       143 ~v~~~~~d~~~~-~~~~~~~~~~~fD~V~~~~~l~~~~~--~--------------~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ++.++++|+.+. ..    .++++||+|+++--......  .              ......++.++.++|+|||.+++.
T Consensus        21 ~~~i~~gD~~~~l~~----l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           21 VHRLHVGDAREVLAS----FPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             CEEEEESCHHHHHTT----SCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEEEECcHHHHHhh----CCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            478999998763 21    15689999999764421100  0              012356788999999999999988


Q ss_pred             eCC
Q 024797          206 MPD  208 (262)
Q Consensus       206 ~~~  208 (262)
                      +.+
T Consensus        97 ~~d   99 (297)
T 2zig_A           97 VGD   99 (297)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            764

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.76  E-value=0.013  Score=49.25  Aligned_cols=76  Identities=11%  Similarity=0.173  Sum_probs=55.7

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCC--CeE-EEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKI--GYY-VGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v-~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...+++|+.||.|.+...+...+.  ..+ .++|+++.+++..+.++..               .++++|+.++..... 
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~---------------~~~~~DI~~~~~~~i-   72 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE---------------EVQVKNLDSISIKQI-   72 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC---------------CCBCCCTTTCCHHHH-
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC---------------CcccCChhhcCHHHh-
Confidence            356899999999999988866653  457 7999999999999888762               156788877653221 


Q ss_pred             CCCCCeeEEEEccccc
Q 024797          161 ADDAPFDICSCQFAMH  176 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~  176 (262)
                       +...+|+++...-.+
T Consensus        73 -~~~~~Dil~ggpPCQ   87 (327)
T 3qv2_A           73 -ESLNCNTWFMSPPCQ   87 (327)
T ss_dssp             -HHTCCCEEEECCCCT
T ss_pred             -ccCCCCEEEecCCcc
Confidence             123689999766444

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.74  E-value=0.013  Score=49.28  Aligned_cols=74  Identities=14%  Similarity=0.216  Sum_probs=54.3

Q ss_pred             CeEEEecCCCCcchHHHHhcCC--CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           86 DVVLDLACGKGGDLIKWDKAKI--GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      .+++|+.||.|.+...+...+.  ..+.++|+++.+++..+.++..              ..++++|+.++.....  +.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~--------------~~~~~~DI~~~~~~~~--~~   67 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE--------------TNLLNRNIQQLTPQVI--KK   67 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT--------------SCEECCCGGGCCHHHH--HH
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC--------------CceeccccccCCHHHh--cc
Confidence            4799999999999888866554  4588999999999998887752              3467788877653211  12


Q ss_pred             CCeeEEEEcccc
Q 024797          164 APFDICSCQFAM  175 (262)
Q Consensus       164 ~~fD~V~~~~~l  175 (262)
                      ..+|+++...-.
T Consensus        68 ~~~D~l~ggpPC   79 (333)
T 4h0n_A           68 WNVDTILMSPPC   79 (333)
T ss_dssp             TTCCEEEECCCC
T ss_pred             CCCCEEEecCCC
Confidence            368999976533

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.69  E-value=0.044  Score=46.67  Aligned_cols=97  Identities=20%  Similarity=0.151  Sum_probs=60.8

Q ss_pred             HhccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ....++++||-+|+|. |..+..+++....+|+++|.+++.++.+++.-.               ..++...-.+. ...
T Consensus       190 ~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa---------------~~vi~~~~~~~-~~~  253 (369)
T 1uuf_A          190 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA---------------DEVVNSRNADE-MAA  253 (369)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC---------------SEEEETTCHHH-HHT
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC---------------cEEeccccHHH-HHH
Confidence            3467899999999875 656666666444479999999999998876322               11111110110 000


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                         -.+.+|+|+-...-.          ..+....+.|+++|.++..
T Consensus       254 ---~~~g~Dvvid~~g~~----------~~~~~~~~~l~~~G~iv~~  287 (369)
T 1uuf_A          254 ---HLKSFDFILNTVAAP----------HNLDDFTTLLKRDGTMTLV  287 (369)
T ss_dssp             ---TTTCEEEEEECCSSC----------CCHHHHHTTEEEEEEEEEC
T ss_pred             ---hhcCCCEEEECCCCH----------HHHHHHHHHhccCCEEEEe
Confidence               115799998654332          1245678899999998764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.60  E-value=0.028  Score=47.55  Aligned_cols=102  Identities=13%  Similarity=0.070  Sum_probs=63.3

Q ss_pred             HHHhccCCCeEEEecCCC-CcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           78 VQLYARRGDVVLDLACGK-GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        78 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ......++++||-+|+|. |..+..+++.. ..+|+++|.+++.++.+++.-.               ..++..+-.++.
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~  224 (352)
T 3fpc_A          160 ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA---------------TDIINYKNGDIV  224 (352)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC---------------CEEECGGGSCHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC---------------ceEEcCCCcCHH
Confidence            444567899999999875 65666666643 3479999999998888877532               111111111110


Q ss_pred             --cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 --LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 --~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        .... .....+|+|+-...-.          ..+..+.+.|+++|+++..
T Consensus       225 ~~v~~~-t~g~g~D~v~d~~g~~----------~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          225 EQILKA-TDGKGVDKVVIAGGDV----------HTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             HHHHHH-TTTCCEEEEEECSSCT----------THHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHH-cCCCCCCEEEECCCCh----------HHHHHHHHHHhcCCEEEEe
Confidence              0001 0234699998543321          2467788999999998754

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.41  E-value=0.067  Score=45.15  Aligned_cols=101  Identities=15%  Similarity=0.073  Sum_probs=61.3

Q ss_pred             HHhccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc-ccccc-
Q 024797           79 QLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD-CYEVH-  155 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d-~~~~~-  155 (262)
                      .....++++||-+|+|. |..+..+++....+|+++|.+++.++.+++.-.              . ..+..+ ..+.. 
T Consensus       163 ~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa--------------~-~~~~~~~~~~~~~  227 (352)
T 1e3j_A          163 RAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA--------------D-VTLVVDPAKEEES  227 (352)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC--------------S-EEEECCTTTSCHH
T ss_pred             hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC--------------C-EEEcCcccccHHH
Confidence            34567899999999865 556666666444469999999998888875322              0 111111 01110 


Q ss_pred             -cccccCC---CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 -LDKVLAD---DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 -~~~~~~~---~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                       ..... .   ...+|+|+-....          ...+....+.|+++|.++..
T Consensus       228 ~i~~~~-~~~~g~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          228 SIIERI-RSAIGDLPNVTIDCSGN----------EKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             HHHHHH-HHHSSSCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHHh-ccccCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence             00000 1   2469999854432          12467788899999998764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.35  E-value=0.08  Score=44.84  Aligned_cols=104  Identities=17%  Similarity=0.036  Sum_probs=64.1

Q ss_pred             HHHhccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc--cc
Q 024797           78 VQLYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC--YE  153 (262)
Q Consensus        78 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~--~~  153 (262)
                      ......++++||-+|+|. |..+..+++. +...|+++|.+++-++.+++. ..            .-+.+...+.  .+
T Consensus       173 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~------------~~~~~~~~~~~~~~  239 (363)
T 3m6i_A          173 QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP------------EVVTHKVERLSAEE  239 (363)
T ss_dssp             HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT------------TCEEEECCSCCHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch------------hcccccccccchHH
Confidence            344567899999999865 6666666664 443599999999999999876 31            1112211110  11


Q ss_pred             cc--cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          154 VH--LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       154 ~~--~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      +.  .... .....+|+|+-...-          ...+..+.+.|++||++++.
T Consensus       240 ~~~~v~~~-t~g~g~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          240 SAKKIVES-FGGIEPAVALECTGV----------ESSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             HHHHHHHH-TSSCCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             HHHHHHHH-hCCCCCCEEEECCCC----------hHHHHHHHHHhcCCCEEEEE
Confidence            10  0001 123579999864432          13567788999999998864

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.17  E-value=0.037  Score=47.66  Aligned_cols=110  Identities=13%  Similarity=0.037  Sum_probs=64.1

Q ss_pred             HHhccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-c
Q 024797           79 QLYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-H  155 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~  155 (262)
                      .....++++||-+|||. |..+..+++. +..+|+++|.+++.++.+++. .               ...+...-.+. .
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-G---------------a~~i~~~~~~~~~  243 (398)
T 2dph_A          180 SAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA-G---------------FETIDLRNSAPLR  243 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT-T---------------CEEEETTSSSCHH
T ss_pred             HcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc-C---------------CcEEcCCCcchHH
Confidence            34567899999999876 6666677664 444899999999988888643 1               12221111111 0


Q ss_pred             --cccccCCCCCeeEEEEcccccccCC-C---HHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 --LDKVLADDAPFDICSCQFAMHYSWS-T---EARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 --~~~~~~~~~~fD~V~~~~~l~~~~~-~---~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        ..... ....+|+|+-...-..... .   .......+..+.+.|++||++++.
T Consensus       244 ~~~~~~~-~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          244 DQIDQIL-GKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             HHHHHHH-SSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             HHHHHHh-CCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEe
Confidence              00000 2236999986543321000 0   000123577888999999998753

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.12  E-value=0.022  Score=43.78  Aligned_cols=96  Identities=20%  Similarity=0.168  Sum_probs=57.0

Q ss_pred             hccCCCeEEEecCCC--CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc--
Q 024797           81 YARRGDVVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL--  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--  156 (262)
                      ...++.+||..|++.  |..+..+++....+|+++|.+++.++.+++. .             ... .  .|..+...  
T Consensus        35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~-g-------------~~~-~--~d~~~~~~~~   97 (198)
T 1pqw_A           35 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRL-G-------------VEY-V--GDSRSVDFAD   97 (198)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTT-C-------------CSE-E--EETTCSTHHH
T ss_pred             CCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-C-------------CCE-E--eeCCcHHHHH
Confidence            346788999999533  5555555543334899999998877766542 1             001 1  12211111  


Q ss_pred             --ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 --DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 --~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        .... ....+|+|+.+..-           ..+..+.+.|+++|+++..
T Consensus        98 ~~~~~~-~~~~~D~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  136 (198)
T 1pqw_A           98 EILELT-DGYGVDVVLNSLAG-----------EAIQRGVQILAPGGRFIEL  136 (198)
T ss_dssp             HHHHHT-TTCCEEEEEECCCT-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHh-CCCCCeEEEECCch-----------HHHHHHHHHhccCCEEEEE
Confidence              0001 23469999865421           2467788999999998764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.00  E-value=0.018  Score=49.57  Aligned_cols=105  Identities=10%  Similarity=0.052  Sum_probs=63.9

Q ss_pred             HhccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc-c--
Q 024797           80 LYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-V--  154 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~--  154 (262)
                      ....++++||-+|||. |..+..+++. +...|+++|.+++.++.+++.-                ++.+...-.+ +  
T Consensus       181 ~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lG----------------a~~i~~~~~~~~~~  244 (398)
T 1kol_A          181 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG----------------FEIADLSLDTPLHE  244 (398)
T ss_dssp             TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT----------------CEEEETTSSSCHHH
T ss_pred             cCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcC----------------CcEEccCCcchHHH
Confidence            4457889999999876 6666667664 4447999999999998887532                1222111001 0  


Q ss_pred             ccccccCCCCCeeEEEEccccc---------ccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          155 HLDKVLADDAPFDICSCQFAMH---------YSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~---------~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ...... ....+|+|+-...-.         |.    .+....+....+.|++||.+++.
T Consensus       245 ~v~~~t-~g~g~Dvvid~~G~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          245 QIAALL-GEPEVDCAVDAVGFEARGHGHEGAKH----EAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             HHHHHH-SSSCEEEEEECCCTTCBCSSTTGGGS----BCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHh-CCCCCCEEEECCCCcccccccccccc----cchHHHHHHHHHHHhcCCEEEEe
Confidence            000000 224699998654321         11    11234677888999999998764

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.94  E-value=0.053  Score=46.30  Aligned_cols=99  Identities=15%  Similarity=0.114  Sum_probs=61.2

Q ss_pred             HhccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc--ccccc
Q 024797           80 LYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD--CYEVH  155 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d--~~~~~  155 (262)
                      ....++++||-+|+|. |..+..+++. +..+|+++|.+++-++.+++.-.               -.++...  -.++.
T Consensus       189 ~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi~~~~~~~~~~  253 (378)
T 3uko_A          189 AKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV---------------NEFVNPKDHDKPIQ  253 (378)
T ss_dssp             TCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTC---------------CEEECGGGCSSCHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC---------------cEEEccccCchhHH
Confidence            3456889999999864 6566666653 44579999999999988875322               1111111  00110


Q ss_pred             --cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 024797          156 --LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT  205 (262)
Q Consensus       156 --~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g-G~li~~  205 (262)
                        ....  ..+.+|+|+-...-          ...+..+.+.|++| |++++.
T Consensus       254 ~~i~~~--~~gg~D~vid~~g~----------~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          254 EVIVDL--TDGGVDYSFECIGN----------VSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             HHHHHH--TTSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHHHh--cCCCCCEEEECCCC----------HHHHHHHHHHhhccCCEEEEE
Confidence              0011  23479999854332          23567888999996 998764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=94.90  E-value=0.12  Score=44.52  Aligned_cols=103  Identities=11%  Similarity=-0.092  Sum_probs=59.6

Q ss_pred             ccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--cc
Q 024797           82 ARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LD  157 (262)
Q Consensus        82 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~  157 (262)
                      ..++++||-+|+|. |..+..+++. +..+|+++|.+++-++.+++.-.               -.++..+-.++.  ..
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~i~  275 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA---------------DHVIDPTKENFVEAVL  275 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC---------------SEEECTTTSCHHHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC---------------CEEEcCCCCCHHHHHH
Confidence            46889999999864 5555566654 44489999999999998876532               111211111110  00


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ... ....+|+|+-...-.     ......+++.+.+.++++|.+++.
T Consensus       276 ~~t-~g~g~D~vid~~g~~-----~~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          276 DYT-NGLGAKLFLEATGVP-----QLVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             HHT-TTCCCSEEEECSSCH-----HHHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             HHh-CCCCCCEEEECCCCc-----HHHHHHHHHHHHhccCCCcEEEEe
Confidence            011 234699998543321     012233444445666999998864

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.86  E-value=0.046  Score=46.00  Aligned_cols=98  Identities=8%  Similarity=0.079  Sum_probs=62.3

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (262)
                      ...++++||-+|+|. |..+..+++. +..+|+++|.+++-++.+++.-.               ..++..+- +..  .
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa---------------~~~i~~~~-~~~~~v  231 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA---------------DAAVKSGA-GAADAI  231 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC---------------SEEEECST-THHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC---------------CEEEcCCC-cHHHHH
Confidence            457889999999875 6666666654 35689999999999998876422               11121111 110  0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .... ....+|+|+-.-.-          ...+..+.+.|+++|.+++.
T Consensus       232 ~~~t-~g~g~d~v~d~~G~----------~~~~~~~~~~l~~~G~iv~~  269 (345)
T 3jv7_A          232 RELT-GGQGATAVFDFVGA----------QSTIDTAQQVVAVDGHISVV  269 (345)
T ss_dssp             HHHH-GGGCEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHh-CCCCCeEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            0000 12379999854322          23567888999999998864

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.85  E-value=0.046  Score=46.43  Aligned_cols=98  Identities=13%  Similarity=-0.053  Sum_probs=61.6

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--cc
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LD  157 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~  157 (262)
                      ...++++||-+|+|. |..+..+++....+|+++|.+++.++.+++.-.               -.++..+..++.  ..
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~v~  250 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA---------------DHGINRLEEDWVERVY  250 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC---------------SEEEETTTSCHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC---------------CEEEcCCcccHHHHHH
Confidence            456889999999775 656666666544489999999998888876422               112221111110  00


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ... ....+|+|+-...-.           .+..+.+.|+++|.+++.
T Consensus       251 ~~~-~g~g~D~vid~~g~~-----------~~~~~~~~l~~~G~iv~~  286 (363)
T 3uog_A          251 ALT-GDRGADHILEIAGGA-----------GLGQSLKAVAPDGRISVI  286 (363)
T ss_dssp             HHH-TTCCEEEEEEETTSS-----------CHHHHHHHEEEEEEEEEE
T ss_pred             HHh-CCCCceEEEECCChH-----------HHHHHHHHhhcCCEEEEE
Confidence            000 234799998654421           346678899999998865

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.80  E-value=0.2  Score=41.80  Aligned_cols=63  Identities=14%  Similarity=0.212  Sum_probs=43.9

Q ss_pred             CeEEEeCcccc-cccccccCCCCCeeEEEEccccccc----CCC------HHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          143 PARLICGDCYE-VHLDKVLADDAPFDICSCQFAMHYS----WST------EARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       143 ~v~~~~~d~~~-~~~~~~~~~~~~fD~V~~~~~l~~~----~~~------~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ...++++|+.+ +..    .++++||+|++.--....    +..      .......+.++.++|+|||.+++.+.+.
T Consensus        14 ~~~ii~gD~~~~l~~----l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           14 NGSMYIGDSLELLES----FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             SEEEEESCHHHHGGG----SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CceEEeCcHHHHHhh----CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            47789999865 321    157899999997533211    000      1346788999999999999999987654

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.72  E-value=0.1  Score=44.45  Aligned_cols=98  Identities=12%  Similarity=0.134  Sum_probs=60.0

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc--cccc-
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC--YEVH-  155 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~--~~~~-  155 (262)
                      ...++++||-+|+|. |..+..+++.. ..+|+++|.+++.++.+++.-.               ..++..+-  .++. 
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~~  252 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA---------------TECVNPQDYKKPIQE  252 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------------SEEECGGGCSSCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC---------------ceEecccccchhHHH
Confidence            456889999999865 55566666543 3379999999999988875321               11111110  0010 


Q ss_pred             -cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 024797          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT  205 (262)
Q Consensus       156 -~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g-G~li~~  205 (262)
                       ....  ..+.+|+|+-...-          ...+....+.|+++ |.+++.
T Consensus       253 ~~~~~--~~~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          253 VLTEM--SNGGVDFSFEVIGR----------LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             HHHHH--TTSCBSEEEECSCC----------HHHHHHHHHHBCTTTCEEEEC
T ss_pred             HHHHH--hCCCCcEEEECCCC----------HHHHHHHHHHhhcCCcEEEEe
Confidence             0001  12479999854322          23467788899999 998764

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.72  E-value=0.082  Score=44.99  Aligned_cols=98  Identities=11%  Similarity=0.097  Sum_probs=60.2

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc-c-cccc-
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD-C-YEVH-  155 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d-~-~~~~-  155 (262)
                      ...++++||-+|+|. |..+..+++.. ..+|+++|.+++.++.+++.-.               ..++... . .++. 
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~~  253 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA---------------TDFVNPNDHSEPISQ  253 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------------CEEECGGGCSSCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC---------------ceEEeccccchhHHH
Confidence            456889999999865 55566666543 3379999999999988875321               1111111 0 0110 


Q ss_pred             -cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 024797          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT  205 (262)
Q Consensus       156 -~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g-G~li~~  205 (262)
                       ....  ..+.+|+|+-....          ...+..+.+.|+++ |.++..
T Consensus       254 ~~~~~--~~~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          254 VLSKM--TNGGVDFSLECVGN----------VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             HHHHH--HTSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHHH--hCCCCCEEEECCCC----------HHHHHHHHHHhhcCCcEEEEE
Confidence             0001  12479999854322          23567788999999 998764

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.67  E-value=0.055  Score=45.53  Aligned_cols=97  Identities=18%  Similarity=0.008  Sum_probs=60.0

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhcC--CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc-ccccc
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKAK--IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC-YEVHL  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~-~~~~~  156 (262)
                      .. ++++||-+|+|. |..+..+++..  ..+|+++|.+++.++.+++.-.               ..++..+- .+. .
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~-~  230 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGA---------------DYVSEMKDAESL-I  230 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTC---------------SEEECHHHHHHH-H
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCC---------------CEEeccccchHH-H
Confidence            45 889999999964 55566666543  4479999999999888876422               11111000 000 0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .... ....+|+|+-....          ...+..+.+.|+++|.++..
T Consensus       231 ~~~~-~g~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  268 (344)
T 2h6e_A          231 NKLT-DGLGASIAIDLVGT----------EETTYNLGKLLAQEGAIILV  268 (344)
T ss_dssp             HHHH-TTCCEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HHhh-cCCCccEEEECCCC----------hHHHHHHHHHhhcCCEEEEe
Confidence            0000 22379999865432          13567788999999998764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.66  E-value=0.085  Score=44.87  Aligned_cols=98  Identities=11%  Similarity=0.010  Sum_probs=60.4

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc--cccc-
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC--YEVH-  155 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~--~~~~-  155 (262)
                      ...++++||-+|+|. |..+..+++. +..+|+++|.+++.++.+++.-.               -.++..+-  .++. 
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi~~~~~~~~~~~  252 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA---------------TECLNPKDYDKPIYE  252 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC---------------SEEECGGGCSSCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC---------------cEEEecccccchHHH
Confidence            456889999999875 5556666653 44479999999999988875321               11111110  0110 


Q ss_pred             -cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 024797          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT  205 (262)
Q Consensus       156 -~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g-G~li~~  205 (262)
                       ....  ..+.+|+|+-...-          ...+..+.+.|+++ |.++..
T Consensus       253 ~i~~~--t~gg~Dvvid~~g~----------~~~~~~~~~~l~~~~G~iv~~  292 (373)
T 1p0f_A          253 VICEK--TNGGVDYAVECAGR----------IETMMNALQSTYCGSGVTVVL  292 (373)
T ss_dssp             HHHHH--TTSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHHH--hCCCCCEEEECCCC----------HHHHHHHHHHHhcCCCEEEEE
Confidence             0011  12479999854322          23567788999999 998764

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.65  E-value=0.096  Score=44.50  Aligned_cols=98  Identities=16%  Similarity=0.146  Sum_probs=60.5

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC-cc-cccc-
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DC-YEVH-  155 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~-~~~~-  155 (262)
                      ...++++||-+|+|. |..+..+++. +...|+++|.+++.++.+++.-.               ..++.. +. .++. 
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~~  251 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA---------------TECINPQDFSKPIQE  251 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC---------------SEEECGGGCSSCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC---------------ceEeccccccccHHH
Confidence            456889999999865 5555566653 44479999999999998875422               111111 10 0110 


Q ss_pred             -cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 024797          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT  205 (262)
Q Consensus       156 -~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g-G~li~~  205 (262)
                       ....  ..+.+|+|+-...-          ...+..+.+.|+++ |.++..
T Consensus       252 ~v~~~--~~~g~D~vid~~g~----------~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          252 VLIEM--TDGGVDYSFECIGN----------VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             HHHHH--TTSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHHH--hCCCCCEEEECCCc----------HHHHHHHHHhhccCCcEEEEE
Confidence             0001  12479999854422          23467788999999 998764

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=94.62  E-value=0.17  Score=41.89  Aligned_cols=113  Identities=12%  Similarity=0.057  Sum_probs=59.3

Q ss_pred             cCCCeEEEecCCCCcchHHHH----h-cCCC--eEEEEeCCh--------h-HHHHHHHHhccCccccccccCCCCCeEE
Q 024797           83 RRGDVVLDLACGKGGDLIKWD----K-AKIG--YYVGIDIAE--------G-SIEDCRTRYNGDADHHQRRKKFSFPARL  146 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~----~-~~~~--~v~gvD~s~--------~-~~~~a~~~~~~~~~~~~~~~~~~~~v~~  146 (262)
                      .+.-+|||+|-|+|......+    + .+..  .++.+|..+        . ..+..........    .-........+
T Consensus        95 ~~~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p----~~~~~~v~L~l  170 (308)
T 3vyw_A           95 RKVIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVP----EYEGERLSLKV  170 (308)
T ss_dssp             CSEEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCS----EEECSSEEEEE
T ss_pred             CCCcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCc----cccCCcEEEEE
Confidence            344589999999998654322    1 2333  356776421        1 1111111111000    00011223567


Q ss_pred             EeCcccccccccccCCCCCeeEEEEcccccccCCCHHH-HHHHHHHHHhccCCCcEEEE
Q 024797          147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEAR-ARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       147 ~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~-~~~~l~~~~~~L~~gG~li~  204 (262)
                      ..+|+.+.- ..+  +...||+|+..+.-.-.  +++- -..+++.+++.++|||.++-
T Consensus       171 ~~GDa~~~l-~~l--~~~~~Da~flDgFsP~k--NPeLWs~e~f~~l~~~~~pgg~laT  224 (308)
T 3vyw_A          171 LLGDARKRI-KEV--ENFKADAVFHDAFSPYK--NPELWTLDFLSLIKERIDEKGYWVS  224 (308)
T ss_dssp             EESCHHHHG-GGC--CSCCEEEEEECCSCTTT--SGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred             EechHHHHH-hhh--cccceeEEEeCCCCccc--CcccCCHHHHHHHHHHhCCCcEEEE
Confidence            788875531 111  34579999987622110  1111 15799999999999998763

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=94.57  E-value=0.12  Score=43.44  Aligned_cols=99  Identities=16%  Similarity=0.140  Sum_probs=59.9

Q ss_pred             HhccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ....++++||-+|+|. |..+..+++....+|+++|.+++.++.+++.-.               ..+  .|..+..+..
T Consensus       160 ~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~~--~d~~~~~~~~  222 (339)
T 1rjw_A          160 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA---------------DLV--VNPLKEDAAK  222 (339)
T ss_dssp             HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC---------------SEE--ECTTTSCHHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCC---------------CEE--ecCCCccHHH
Confidence            3567889999999964 555555555444489999999998888865211               011  1221111100


Q ss_pred             cc-CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          159 VL-ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .. ...+.+|+|+.....          ...+....+.|+++|.++..
T Consensus       223 ~~~~~~~~~d~vid~~g~----------~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          223 FMKEKVGGVHAAVVTAVS----------KPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             HHHHHHSSEEEEEESSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHhCCCCEEEECCCC----------HHHHHHHHHHhhcCCEEEEe
Confidence            00 001469999865432          13567788899999998754

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.53  E-value=0.04  Score=46.26  Aligned_cols=99  Identities=18%  Similarity=0.167  Sum_probs=59.4

Q ss_pred             HhccCCCeEEEecCCC--CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--
Q 024797           80 LYARRGDVVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--  155 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--  155 (262)
                      ....++.+||-.|+|+  |..+..+++....+|+++|.+++.++.+++.-.               -..+...-.++.  
T Consensus       140 ~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga---------------~~~~~~~~~~~~~~  204 (340)
T 3gms_A          140 LNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGA---------------AYVIDTSTAPLYET  204 (340)
T ss_dssp             SCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC---------------SEEEETTTSCHHHH
T ss_pred             cccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCC---------------cEEEeCCcccHHHH
Confidence            3456889999999984  555666665433489999999998888876422               111111111110  


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .... .....+|+|+....-.       .    +....+.|+++|.++..
T Consensus       205 ~~~~-~~~~g~Dvvid~~g~~-------~----~~~~~~~l~~~G~iv~~  242 (340)
T 3gms_A          205 VMEL-TNGIGADAAIDSIGGP-------D----GNELAFSLRPNGHFLTI  242 (340)
T ss_dssp             HHHH-TTTSCEEEEEESSCHH-------H----HHHHHHTEEEEEEEEEC
T ss_pred             HHHH-hCCCCCcEEEECCCCh-------h----HHHHHHHhcCCCEEEEE
Confidence            0001 1234799998654322       1    12344789999998764

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=94.52  E-value=0.063  Score=45.46  Aligned_cols=99  Identities=16%  Similarity=0.041  Sum_probs=59.6

Q ss_pred             HhccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-ccc
Q 024797           80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~  157 (262)
                      ....++++||-+|+|. |..+..+++....+|+++|.+++.++.+++.-.               ..++..  .+. .+.
T Consensus       175 ~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~v~~~--~~~~~~~  237 (360)
T 1piw_A          175 NGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGA---------------DHYIAT--LEEGDWG  237 (360)
T ss_dssp             TTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC---------------SEEEEG--GGTSCHH
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC---------------CEEEcC--cCchHHH
Confidence            4457889999999864 555666665433379999999998888876322               111111  111 110


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ... . +.+|+|+....-.    .    ...+..+.+.|+++|.++..
T Consensus       238 ~~~-~-~~~D~vid~~g~~----~----~~~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          238 EKY-F-DTFDLIVVCASSL----T----DIDFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             HHS-C-SCEEEEEECCSCS----T----TCCTTTGGGGEEEEEEEEEC
T ss_pred             HHh-h-cCCCEEEECCCCC----c----HHHHHHHHHHhcCCCEEEEe
Confidence            011 1 4799998654330    0    01235577899999998753

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=94.46  E-value=0.098  Score=44.67  Aligned_cols=98  Identities=16%  Similarity=0.045  Sum_probs=59.9

Q ss_pred             ccCCCeEEEecCCC-CcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc---ccccc-
Q 024797           82 ARRGDVVLDLACGK-GGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD---CYEVH-  155 (262)
Q Consensus        82 ~~~~~~vLDiGcG~-G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d---~~~~~-  155 (262)
                      ..++++||-+|+|. |..+..+++... .+|+++|.+++.++.+++.-.               -.++..+   -.++. 
T Consensus       193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~~~  257 (380)
T 1vj0_A          193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA---------------DLTLNRRETSVEERRK  257 (380)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC---------------SEEEETTTSCHHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCC---------------cEEEeccccCcchHHH
Confidence            56789999999764 555666666444 589999999998888875321               1112111   00100 


Q ss_pred             -cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 -~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                       ..... ....+|+|+-.....          ..+....+.|+++|.++..
T Consensus       258 ~v~~~~-~g~g~Dvvid~~g~~----------~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          258 AIMDIT-HGRGADFILEATGDS----------RALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             HHHHHT-TTSCEEEEEECSSCT----------THHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHh-CCCCCcEEEECCCCH----------HHHHHHHHHHhcCCEEEEE
Confidence             00010 223699998654321          2456788899999998764

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=94.44  E-value=0.2  Score=41.94  Aligned_cols=102  Identities=11%  Similarity=0.033  Sum_probs=60.6

Q ss_pred             HHhccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc-
Q 024797           79 QLYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-  155 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-  155 (262)
                      .....++++||-.|+|. |..+..+++. +...++++|.+++-++.+++.-.               ...+...-.+.. 
T Consensus       155 ~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa---------------~~~i~~~~~~~~~  219 (346)
T 4a2c_A          155 LAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGA---------------MQTFNSSEMSAPQ  219 (346)
T ss_dssp             HTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC---------------SEEEETTTSCHHH
T ss_pred             HhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCC---------------eEEEeCCCCCHHH
Confidence            34456889999999876 4344445543 45568999999998888876432               112211111110 


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ..........+|+|+.....          ...+....+.|++||.+++.
T Consensus       220 ~~~~~~~~~g~d~v~d~~G~----------~~~~~~~~~~l~~~G~~v~~  259 (346)
T 4a2c_A          220 MQSVLRELRFNQLILETAGV----------PQTVELAVEIAGPHAQLALV  259 (346)
T ss_dssp             HHHHHGGGCSSEEEEECSCS----------HHHHHHHHHHCCTTCEEEEC
T ss_pred             HHHhhcccCCcccccccccc----------cchhhhhhheecCCeEEEEE
Confidence            00000123557888754322          23567778899999998764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=94.42  E-value=0.049  Score=45.60  Aligned_cols=99  Identities=13%  Similarity=0.005  Sum_probs=60.4

Q ss_pred             HhccCCCeEEEecCCC--CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--
Q 024797           80 LYARRGDVVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--  155 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--  155 (262)
                      ....++++||-.|++.  |..+..+++....+|+++|.+++.++.+.+.+.             . ...+...-.++.  
T Consensus       145 ~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g-------------~-~~~~~~~~~~~~~~  210 (336)
T 4b7c_A          145 GQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELG-------------F-DGAIDYKNEDLAAG  210 (336)
T ss_dssp             TCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC-------------C-SEEEETTTSCHHHH
T ss_pred             cCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC-------------C-CEEEECCCHHHHHH
Confidence            3457899999999843  656666665444489999999988887743332             0 111111111110  


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ....  ..+.+|+|+.+..-           ..+..+.+.|+++|.+++.
T Consensus       211 ~~~~--~~~~~d~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~  247 (336)
T 4b7c_A          211 LKRE--CPKGIDVFFDNVGG-----------EILDTVLTRIAFKARIVLC  247 (336)
T ss_dssp             HHHH--CTTCEEEEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred             HHHh--cCCCceEEEECCCc-----------chHHHHHHHHhhCCEEEEE
Confidence            0011  13579999864421           2567888999999998764

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.38  E-value=0.1  Score=44.43  Aligned_cols=98  Identities=13%  Similarity=0.057  Sum_probs=59.9

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc-c-cccc-
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD-C-YEVH-  155 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d-~-~~~~-  155 (262)
                      ...++++||-+|+|. |..+..+++.. ..+|+++|.+++.++.+++.-.               ..++... . .++. 
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi~~~~~~~~~~~  256 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA---------------TDCLNPRELDKPVQD  256 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------------SEEECGGGCSSCHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC---------------cEEEccccccchHHH
Confidence            456889999999864 55566666543 3479999999999888875321               1111110 0 0010 


Q ss_pred             -cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 024797          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT  205 (262)
Q Consensus       156 -~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g-G~li~~  205 (262)
                       ....  ..+.+|+|+-.-.-          ...+..+.+.|+++ |.+++.
T Consensus       257 ~v~~~--~~~g~Dvvid~~G~----------~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          257 VITEL--TAGGVDYSLDCAGT----------AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             HHHHH--HTSCBSEEEESSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             HHHHH--hCCCccEEEECCCC----------HHHHHHHHHHhhcCCCEEEEE
Confidence             0000  12479999854322          23567788999999 998753

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=94.29  E-value=0.13  Score=43.28  Aligned_cols=100  Identities=13%  Similarity=0.146  Sum_probs=60.2

Q ss_pred             HhccCCCeEEEecCCC--CcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc-
Q 024797           80 LYARRGDVVLDLACGK--GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-  155 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~--G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-  155 (262)
                      ....++.+||-.|+|.  |..+..+++.. ..+|+++|.+++.++.+++.-.              ...+-..+ .+.. 
T Consensus       166 ~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~--------------~~~~~~~~-~~~~~  230 (347)
T 1jvb_A          166 ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA--------------DYVINASM-QDPLA  230 (347)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC--------------SEEEETTT-SCHHH
T ss_pred             cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC--------------CEEecCCC-ccHHH
Confidence            4456889999999984  44455555443 4479999999988888865321              01111111 1100 


Q ss_pred             -cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 -~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                       ..... ..+.+|+|+....-          ...+..+.+.|+++|.++..
T Consensus       231 ~~~~~~-~~~~~d~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          231 EIRRIT-ESKGVDAVIDLNNS----------EKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             HHHHHT-TTSCEEEEEESCCC----------HHHHTTGGGGEEEEEEEEEC
T ss_pred             HHHHHh-cCCCceEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence             00111 11579999865432          13567788999999998763

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.24  E-value=0.15  Score=43.29  Aligned_cols=94  Identities=11%  Similarity=0.071  Sum_probs=59.7

Q ss_pred             CCCeEEEec-CCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--ccc
Q 024797           84 RGDVVLDLA-CGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDK  158 (262)
Q Consensus        84 ~~~~vLDiG-cG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~  158 (262)
                      ++.+||-.| +|. |..+..+++. ...+|+++|.+++-++.+++.-.               -.++... .++.  ...
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa---------------d~vi~~~-~~~~~~v~~  234 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA---------------HHVIDHS-KPLAAEVAA  234 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC---------------SEEECTT-SCHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC---------------CEEEeCC-CCHHHHHHH
Confidence            678999998 554 7677777765 56689999999988888876321               1111111 0110  110


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .  ..+.+|+|+-...-          ...+..+.+.|+++|.+++.
T Consensus       235 ~--~~~g~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          235 L--GLGAPAFVFSTTHT----------DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             T--CSCCEEEEEECSCH----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             h--cCCCceEEEECCCc----------hhhHHHHHHHhcCCCEEEEE
Confidence            1  23579999853321          23567788999999998864

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.20  E-value=0.088  Score=43.87  Aligned_cols=98  Identities=14%  Similarity=0.134  Sum_probs=59.9

Q ss_pred             hccCCCeEEEecC-C-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797           81 YARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (262)
                      ...++++||-.|+ | .|..+..+++....+|+++|.+++.++.+++.-.               ...+..+-.++.  .
T Consensus       137 ~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga---------------~~~~~~~~~~~~~~~  201 (325)
T 3jyn_A          137 QVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGA---------------WETIDYSHEDVAKRV  201 (325)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC---------------SEEEETTTSCHHHHH
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC---------------CEEEeCCCccHHHHH
Confidence            3467899999983 4 3656666665433489999999998888876422               111111111110  0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ... .....+|+|+....-.           .+..+.+.|+++|.+++.
T Consensus       202 ~~~-~~~~g~Dvvid~~g~~-----------~~~~~~~~l~~~G~iv~~  238 (325)
T 3jyn_A          202 LEL-TDGKKCPVVYDGVGQD-----------TWLTSLDSVAPRGLVVSF  238 (325)
T ss_dssp             HHH-TTTCCEEEEEESSCGG-----------GHHHHHTTEEEEEEEEEC
T ss_pred             HHH-hCCCCceEEEECCChH-----------HHHHHHHHhcCCCEEEEE
Confidence            001 1234799998654332           356778899999998875

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=94.20  E-value=0.089  Score=46.48  Aligned_cols=81  Identities=11%  Similarity=0.069  Sum_probs=55.7

Q ss_pred             CeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc------
Q 024797           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV------  159 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~------  159 (262)
                      .+++|+.||.|.+...+...+...+.++|+++.+++.-+.++..           .....++++|+.++.....      
T Consensus        89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~-----------~p~~~~~~~DI~~i~~~~~~~~~~~  157 (482)
T 3me5_A           89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYC-----------DPATHHFNEDIRDITLSHQEGVSDE  157 (482)
T ss_dssp             EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCC-----------CTTTCEEESCTHHHHCTTCTTSCHH
T ss_pred             ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhccc-----------CCCcceeccchhhhhhccccccchh
Confidence            58999999999999888666665689999999998888877631           1124567788876542100      


Q ss_pred             ------cCCCCCeeEEEEcccccc
Q 024797          160 ------LADDAPFDICSCQFAMHY  177 (262)
Q Consensus       160 ------~~~~~~fD~V~~~~~l~~  177 (262)
                            ......+|+|+...-.+-
T Consensus       158 ~~~~~i~~~~~~~Dvl~gGpPCQ~  181 (482)
T 3me5_A          158 AAAEHIRQHIPEHDVLLAGFPCQP  181 (482)
T ss_dssp             HHHHHHHHHSCCCSEEEEECCCCC
T ss_pred             hHHhhhhhcCCCCCEEEecCCCcc
Confidence                  001246899997664443

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.17  E-value=0.2  Score=42.23  Aligned_cols=98  Identities=13%  Similarity=0.069  Sum_probs=59.2

Q ss_pred             HhccCC------CeEEEecCCC-Ccch-HHHH-hc-CCCeEEEEeCChh---HHHHHHHHhccCccccccccCCCCCeEE
Q 024797           80 LYARRG------DVVLDLACGK-GGDL-IKWD-KA-KIGYYVGIDIAEG---SIEDCRTRYNGDADHHQRRKKFSFPARL  146 (262)
Q Consensus        80 ~~~~~~------~~vLDiGcG~-G~~~-~~l~-~~-~~~~v~gvD~s~~---~~~~a~~~~~~~~~~~~~~~~~~~~v~~  146 (262)
                      ....++      ++||-+|+|. |..+ ..++ +. +..+|+++|.+++   -++.+++.-.                +.
T Consensus       162 ~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa----------------~~  225 (357)
T 2b5w_A          162 AYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDA----------------TY  225 (357)
T ss_dssp             HHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTC----------------EE
T ss_pred             cCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCC----------------cc
Confidence            345678      9999999864 6566 6666 54 3334999999988   7888765321                11


Q ss_pred             EeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       147 ~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      +  |..+..+.......+.+|+|+-...-          ...+..+.+.|+++|.++..
T Consensus       226 v--~~~~~~~~~i~~~~gg~Dvvid~~g~----------~~~~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          226 V--DSRQTPVEDVPDVYEQMDFIYEATGF----------PKHAIQSVQALAPNGVGALL  272 (357)
T ss_dssp             E--ETTTSCGGGHHHHSCCEEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             c--CCCccCHHHHHHhCCCCCEEEECCCC----------hHHHHHHHHHHhcCCEEEEE
Confidence            1  22111110000002379999854322          12467788999999998764

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.15  E-value=0.06  Score=45.02  Aligned_cols=95  Identities=17%  Similarity=0.060  Sum_probs=58.4

Q ss_pred             hccCCCeEEEecCC--CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc-ccc-
Q 024797           81 YARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHL-  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~-  156 (262)
                      ...++.+||-.||+  .|..+..+++....+|+++|.+++.++.+++ +.               .. ...|..+ ... 
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~-~g---------------~~-~~~d~~~~~~~~  204 (333)
T 1v3u_A          142 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ-IG---------------FD-AAFNYKTVNSLE  204 (333)
T ss_dssp             CCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TT---------------CS-EEEETTSCSCHH
T ss_pred             CCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-cC---------------Cc-EEEecCCHHHHH
Confidence            35678999999983  3555555555444489999999988887743 22               10 1112221 111 


Q ss_pred             ---ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 ---DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ---~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                         ...  ..+.+|+|+.+..-           ..+....+.|++||++++.
T Consensus       205 ~~~~~~--~~~~~d~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  243 (333)
T 1v3u_A          205 EALKKA--SPDGYDCYFDNVGG-----------EFLNTVLSQMKDFGKIAIC  243 (333)
T ss_dssp             HHHHHH--CTTCEEEEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHHH--hCCCCeEEEECCCh-----------HHHHHHHHHHhcCCEEEEE
Confidence               111  12579999865532           1367788999999998764

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=94.14  E-value=0.08  Score=44.55  Aligned_cols=96  Identities=21%  Similarity=0.116  Sum_probs=59.5

Q ss_pred             hccCCCeEEEecCC--CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc---ccc
Q 024797           81 YARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY---EVH  155 (262)
Q Consensus        81 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~---~~~  155 (262)
                      ...++++||-.|++  .|..+..+++....+|+++|.+++.++.+++.-.               ...+  |..   ++.
T Consensus       166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~---------------~~~~--d~~~~~~~~  228 (347)
T 2hcy_A          166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGG---------------EVFI--DFTKEKDIV  228 (347)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTC---------------CEEE--ETTTCSCHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCC---------------ceEE--ecCccHhHH
Confidence            45688999999984  4555555655444489999999888877765211               0111  221   110


Q ss_pred             --cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 --LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 --~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        ..... . +.+|+|+.....          ...+..+.+.|+++|+++..
T Consensus       229 ~~~~~~~-~-~~~D~vi~~~g~----------~~~~~~~~~~l~~~G~iv~~  268 (347)
T 2hcy_A          229 GAVLKAT-D-GGAHGVINVSVS----------EAAIEASTRYVRANGTTVLV  268 (347)
T ss_dssp             HHHHHHH-T-SCEEEEEECSSC----------HHHHHHHTTSEEEEEEEEEC
T ss_pred             HHHHHHh-C-CCCCEEEECCCc----------HHHHHHHHHHHhcCCEEEEE
Confidence              00011 1 279999865532          13567888999999998764

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=94.11  E-value=0.079  Score=44.52  Aligned_cols=97  Identities=14%  Similarity=0.092  Sum_probs=60.5

Q ss_pred             hccCCCeEEEecCC--CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797           81 YARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (262)
                      ...++++||-.|++  .|..+..+++....+|++++.+++.++.+++.-.               ..++..+ .++.  .
T Consensus       156 ~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga---------------~~v~~~~-~~~~~~v  219 (342)
T 4eye_A          156 QLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGA---------------DIVLPLE-EGWAKAV  219 (342)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC---------------SEEEESS-TTHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC---------------cEEecCc-hhHHHHH
Confidence            34678999999983  3666666666544489999999998888876422               1122222 1111  0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .... ....+|+|+....-.           .+..+.+.|+++|.+++.
T Consensus       220 ~~~~-~~~g~Dvvid~~g~~-----------~~~~~~~~l~~~G~iv~~  256 (342)
T 4eye_A          220 REAT-GGAGVDMVVDPIGGP-----------AFDDAVRTLASEGRLLVV  256 (342)
T ss_dssp             HHHT-TTSCEEEEEESCC-------------CHHHHHHTEEEEEEEEEC
T ss_pred             HHHh-CCCCceEEEECCchh-----------HHHHHHHhhcCCCEEEEE
Confidence            0011 234699998654322           356788899999998764

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=94.09  E-value=0.07  Score=46.20  Aligned_cols=47  Identities=9%  Similarity=0.021  Sum_probs=39.7

Q ss_pred             cCCCeEEEecCCCCcchHHHH-hc-C-CCeEEEEeCChhHHHHHHHHhcc
Q 024797           83 RRGDVVLDLACGKGGDLIKWD-KA-K-IGYYVGIDIAEGSIEDCRTRYNG  129 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~-~~-~-~~~v~gvD~s~~~~~~a~~~~~~  129 (262)
                      .++..|+|+||+.|.++..++ +. + .++|+++|+++...+..+++...
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~  274 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  274 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHh
Confidence            578899999999999988876 32 3 36899999999999999988763

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.06  E-value=0.49  Score=35.56  Aligned_cols=103  Identities=16%  Similarity=0.200  Sum_probs=59.0

Q ss_pred             CCeEEEecCCC-CcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc-ccccC
Q 024797           85 GDVVLDLACGK-GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKVLA  161 (262)
Q Consensus        85 ~~~vLDiGcG~-G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~~  161 (262)
                      +.+|+=+|||. |......+... ...|+++|.+++.++.+++. .               +..+.+|..+... ... .
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~-g---------------~~~~~gd~~~~~~l~~~-~  101 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSE-G---------------RNVISGDATDPDFWERI-L  101 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHT-T---------------CCEEECCTTCHHHHHTB-C
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHC-C---------------CCEEEcCCCCHHHHHhc-c
Confidence            56899999874 43333333333 34799999999887776542 1               4556777654321 111 0


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      .-..+|+|++...      +..... .+-...+.+.|++.++....+...
T Consensus       102 ~~~~ad~vi~~~~------~~~~~~-~~~~~~~~~~~~~~ii~~~~~~~~  144 (183)
T 3c85_A          102 DTGHVKLVLLAMP------HHQGNQ-TALEQLQRRNYKGQIAAIAEYPDQ  144 (183)
T ss_dssp             SCCCCCEEEECCS------SHHHHH-HHHHHHHHTTCCSEEEEEESSHHH
T ss_pred             CCCCCCEEEEeCC------ChHHHH-HHHHHHHHHCCCCEEEEEECCHHH
Confidence            1245898886432      112222 233455566778888887766544

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=94.00  E-value=0.28  Score=42.49  Aligned_cols=102  Identities=17%  Similarity=0.114  Sum_probs=66.0

Q ss_pred             CCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        85 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ..+|+=+|+|. |..+...+......|+++|.+++.++.+++. .               +.++.+|+.+....... .-
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~-g---------------~~vi~GDat~~~~L~~a-gi   66 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKF-G---------------MKVFYGDATRMDLLESA-GA   66 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHT-T---------------CCCEESCTTCHHHHHHT-TT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhC-C---------------CeEEEcCCCCHHHHHhc-CC
Confidence            45789999865 4433433334444799999999999888742 2               56789998775432111 23


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      ...|+|++...      + ......+....+.+.|...+++-..+..
T Consensus        67 ~~A~~viv~~~------~-~~~n~~i~~~ar~~~p~~~Iiara~~~~  106 (413)
T 3l9w_A           67 AKAEVLINAID------D-PQTNLQLTEMVKEHFPHLQIIARARDVD  106 (413)
T ss_dssp             TTCSEEEECCS------S-HHHHHHHHHHHHHHCTTCEEEEEESSHH
T ss_pred             CccCEEEECCC------C-hHHHHHHHHHHHHhCCCCeEEEEECCHH
Confidence            56788876442      1 3344455666777888888888776654

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.99  E-value=0.49  Score=33.82  Aligned_cols=101  Identities=10%  Similarity=-0.036  Sum_probs=58.2

Q ss_pred             CCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        85 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ..+|+=+|||. |..+...+......|+++|.+++.++.+++.                .+.++.+|..+....... .-
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~----------------~~~~~~gd~~~~~~l~~~-~~   68 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE----------------GFDAVIADPTDESFYRSL-DL   68 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT----------------TCEEEECCTTCHHHHHHS-CC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC----------------CCcEEECCCCCHHHHHhC-Cc
Confidence            45799999864 3322222223344799999999887776642                156788887664321111 23


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      ..+|+|++...-       ......+....+.+. ...++....+..
T Consensus        69 ~~~d~vi~~~~~-------~~~n~~~~~~a~~~~-~~~iia~~~~~~  107 (141)
T 3llv_A           69 EGVSAVLITGSD-------DEFNLKILKALRSVS-DVYAIVRVSSPK  107 (141)
T ss_dssp             TTCSEEEECCSC-------HHHHHHHHHHHHHHC-CCCEEEEESCGG
T ss_pred             ccCCEEEEecCC-------HHHHHHHHHHHHHhC-CceEEEEEcChh
Confidence            468988864431       222333344444555 667777666654

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=93.97  E-value=0.11  Score=43.38  Aligned_cols=98  Identities=17%  Similarity=0.136  Sum_probs=59.6

Q ss_pred             hccCCCeEEEecCC--CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797           81 YARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (262)
                      ...++++||-.|++  .|..+..+++....+|+++|.+++.++.+++.-.               ...+..+-.++.  .
T Consensus       145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga---------------~~~~~~~~~~~~~~~  209 (334)
T 3qwb_A          145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGA---------------EYLINASKEDILRQV  209 (334)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---------------SEEEETTTSCHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC---------------cEEEeCCCchHHHHH
Confidence            34688999999953  3555556665444589999999988887766321               111211111110  0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ... .....+|+|+....-           ..+..+.+.|+++|.++..
T Consensus       210 ~~~-~~~~g~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          210 LKF-TNGKGVDASFDSVGK-----------DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             HHH-TTTSCEEEEEECCGG-----------GGHHHHHHHEEEEEEEEEC
T ss_pred             HHH-hCCCCceEEEECCCh-----------HHHHHHHHHhccCCEEEEE
Confidence            000 023469999865432           2356778899999998764

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=93.79  E-value=0.14  Score=43.13  Aligned_cols=98  Identities=17%  Similarity=0.001  Sum_probs=59.4

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhcCCC-eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (262)
                      .. ++++||-+|+|. |..+..+++.... +|+++|.+++.++.+++.-.               ..++..+-.++.  .
T Consensus       165 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga---------------~~~~~~~~~~~~~~v  228 (348)
T 2d8a_A          165 PI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA---------------DYVINPFEEDVVKEV  228 (348)
T ss_dssp             CC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC---------------SEEECTTTSCHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC---------------CEEECCCCcCHHHHH
Confidence            34 788999999964 5555566654333 79999999988888875322               111111111110  0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .... ....+|+|+.....          ...+..+.+.|+++|.++..
T Consensus       229 ~~~~-~g~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  266 (348)
T 2d8a_A          229 MDIT-DGNGVDVFLEFSGA----------PKALEQGLQAVTPAGRVSLL  266 (348)
T ss_dssp             HHHT-TTSCEEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHc-CCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            0000 22369999865432          23567788899999998764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=93.78  E-value=0.66  Score=32.72  Aligned_cols=102  Identities=17%  Similarity=0.123  Sum_probs=54.6

Q ss_pred             CCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        85 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      +.+|+=+|+|. |......+......|+++|.+++.++..++...               +.++.+|..+....... .-
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~---------------~~~~~~d~~~~~~l~~~-~~   67 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID---------------ALVINGDCTKIKTLEDA-GI   67 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS---------------SEEEESCTTSHHHHHHT-TT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcC---------------cEEEEcCCCCHHHHHHc-Cc
Confidence            45788888864 332222222333479999999887766654322               45566775433210000 12


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      ..+|+|++.-..       ......+..+.+.+.++ .+++...+..
T Consensus        68 ~~~d~vi~~~~~-------~~~~~~~~~~~~~~~~~-~ii~~~~~~~  106 (140)
T 1lss_A           68 EDADMYIAVTGK-------EEVNLMSSLLAKSYGIN-KTIARISEIE  106 (140)
T ss_dssp             TTCSEEEECCSC-------HHHHHHHHHHHHHTTCC-CEEEECSSTT
T ss_pred             ccCCEEEEeeCC-------chHHHHHHHHHHHcCCC-EEEEEecCHh
Confidence            468998865322       22233444555667775 5666555543

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=93.68  E-value=0.18  Score=42.75  Aligned_cols=97  Identities=16%  Similarity=0.043  Sum_probs=59.7

Q ss_pred             hccCCCeEEEecC-C-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797           81 YARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (262)
                      ...++++||-.|+ | .|..+..+++....+|+++|.+++.++.+++.-.               ..++..+-.++.  .
T Consensus       160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga---------------~~~~~~~~~~~~~~~  224 (362)
T 2c0c_A          160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGC---------------DRPINYKTEPVGTVL  224 (362)
T ss_dssp             CCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---------------SEEEETTTSCHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCC---------------cEEEecCChhHHHHH
Confidence            4568899999993 3 4666666666444489999999988888775311               111111111110  0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ...  ....+|+|+....-           ..+..+.+.|+++|.++..
T Consensus       225 ~~~--~~~g~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  260 (362)
T 2c0c_A          225 KQE--YPEGVDVVYESVGG-----------AMFDLAVDALATKGRLIVI  260 (362)
T ss_dssp             HHH--CTTCEEEEEECSCT-----------HHHHHHHHHEEEEEEEEEC
T ss_pred             HHh--cCCCCCEEEECCCH-----------HHHHHHHHHHhcCCEEEEE
Confidence            000  12469999865431           2567788999999998764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=93.38  E-value=0.12  Score=43.63  Aligned_cols=97  Identities=16%  Similarity=0.044  Sum_probs=59.6

Q ss_pred             hccCCCeEEEecC-C-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797           81 YARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (262)
                      ...++++||-.|+ | .|..+..+++....+|+++|.+++.++.+++.-.               ...+..+-.++.  .
T Consensus       164 ~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~~~~~~~~~~~~~~  228 (353)
T 4dup_A          164 GLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGA---------------KRGINYRSEDFAAVI  228 (353)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC---------------SEEEETTTSCHHHHH
T ss_pred             CCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC---------------CEEEeCCchHHHHHH
Confidence            3568899999954 3 3656666666544589999999999888876422               111111111110  0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ...  ....+|+|+....-.           .+....+.|+++|.++..
T Consensus       229 ~~~--~~~g~Dvvid~~g~~-----------~~~~~~~~l~~~G~iv~~  264 (353)
T 4dup_A          229 KAE--TGQGVDIILDMIGAA-----------YFERNIASLAKDGCLSII  264 (353)
T ss_dssp             HHH--HSSCEEEEEESCCGG-----------GHHHHHHTEEEEEEEEEC
T ss_pred             HHH--hCCCceEEEECCCHH-----------HHHHHHHHhccCCEEEEE
Confidence            001  135799998655432           356678899999998764

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=93.37  E-value=0.22  Score=42.26  Aligned_cols=97  Identities=14%  Similarity=0.112  Sum_probs=57.9

Q ss_pred             Hhcc-CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc-c
Q 024797           80 LYAR-RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-L  156 (262)
Q Consensus        80 ~~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~  156 (262)
                      .... ++++||-+|+|. |..+..+++....+|+++|.+++.++.+++.+.             . ..++  |..+.. .
T Consensus       182 ~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lG-------------a-~~v~--~~~~~~~~  245 (366)
T 1yqd_A          182 FGLDEPGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFG-------------A-DSFL--VSRDQEQM  245 (366)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSC-------------C-SEEE--ETTCHHHH
T ss_pred             cCcCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcC-------------C-ceEE--eccCHHHH
Confidence            3455 889999999764 555555555444489999999988887764432             0 1111  111100 1


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ..   ..+.+|+|+.......          .+....+.|+++|.++..
T Consensus       246 ~~---~~~~~D~vid~~g~~~----------~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          246 QA---AAGTLDGIIDTVSAVH----------PLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             HH---TTTCEEEEEECCSSCC----------CSHHHHHHEEEEEEEEEC
T ss_pred             HH---hhCCCCEEEECCCcHH----------HHHHHHHHHhcCCEEEEE
Confidence            11   1246999986554321          124566788999998753

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.36  E-value=0.1  Score=43.75  Aligned_cols=99  Identities=16%  Similarity=0.145  Sum_probs=59.4

Q ss_pred             hccCCCeEEEecCC--CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797           81 YARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (262)
                      ...++++||-.|++  .|..+..+++....+|+++|.+++.++.+++.+.             ....+-..+..++.  .
T Consensus       152 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g-------------~~~~~d~~~~~~~~~~~  218 (345)
T 2j3h_A          152 SPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFG-------------FDDAFNYKEESDLTAAL  218 (345)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSC-------------CSEEEETTSCSCSHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC-------------CceEEecCCHHHHHHHH
Confidence            35678999999983  3655666655444489999999988888764332             00111111100110  1


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ...  ..+.+|+|+.+...           ..+....+.|+++|.+++.
T Consensus       219 ~~~--~~~~~d~vi~~~g~-----------~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          219 KRC--FPNGIDIYFENVGG-----------KMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             HHH--CTTCEEEEEESSCH-----------HHHHHHHTTEEEEEEEEEC
T ss_pred             HHH--hCCCCcEEEECCCH-----------HHHHHHHHHHhcCCEEEEE
Confidence            111  12569999865421           2567788999999998764

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=93.30  E-value=0.16  Score=42.89  Aligned_cols=97  Identities=20%  Similarity=0.107  Sum_probs=57.4

Q ss_pred             Hhcc-CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC-ccccccc
Q 024797           80 LYAR-RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG-DCYEVHL  156 (262)
Q Consensus        80 ~~~~-~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~-d~~~~~~  156 (262)
                      .... ++++||-+|+|. |..+..+++....+|+++|.+++.++.+++.+.   .           -.++.. +...+  
T Consensus       175 ~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lG---a-----------~~vi~~~~~~~~--  238 (357)
T 2cf5_A          175 FGLKQPGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLG---A-----------DDYVIGSDQAKM--  238 (357)
T ss_dssp             TSTTSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSC---C-----------SCEEETTCHHHH--
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcC---C-----------ceeeccccHHHH--
Confidence            3445 889999999764 555555555433489999999988877763332   0           011111 11111  


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ..   ..+.+|+|+-...-..          .+....+.|+++|.++..
T Consensus       239 ~~---~~~g~D~vid~~g~~~----------~~~~~~~~l~~~G~iv~~  274 (357)
T 2cf5_A          239 SE---LADSLDYVIDTVPVHH----------ALEPYLSLLKLDGKLILM  274 (357)
T ss_dssp             HH---STTTEEEEEECCCSCC----------CSHHHHTTEEEEEEEEEC
T ss_pred             HH---hcCCCCEEEECCCChH----------HHHHHHHHhccCCEEEEe
Confidence            10   1246999986543321          135567899999998764

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.30  E-value=0.24  Score=41.48  Aligned_cols=96  Identities=15%  Similarity=0.064  Sum_probs=59.7

Q ss_pred             hccCCCeEEEecC--CCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc--
Q 024797           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL--  156 (262)
Q Consensus        81 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--  156 (262)
                      ...++.+||-.|+  |.|..+..+++....+|+++|.+++.++.+++.-.               ...+  |..+..+  
T Consensus       163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga---------------~~~~--d~~~~~~~~  225 (343)
T 2eih_A          163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGA---------------DETV--NYTHPDWPK  225 (343)
T ss_dssp             CCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC---------------SEEE--ETTSTTHHH
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC---------------CEEE--cCCcccHHH
Confidence            3457899999998  34656666665444489999999998888865321               0111  2111111  


Q ss_pred             --ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 --DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 --~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        .... ....+|+|+.... .          ..+..+.+.|+++|.++..
T Consensus       226 ~~~~~~-~~~~~d~vi~~~g-~----------~~~~~~~~~l~~~G~~v~~  264 (343)
T 2eih_A          226 EVRRLT-GGKGADKVVDHTG-A----------LYFEGVIKATANGGRIAIA  264 (343)
T ss_dssp             HHHHHT-TTTCEEEEEESSC-S----------SSHHHHHHHEEEEEEEEES
T ss_pred             HHHHHh-CCCCceEEEECCC-H----------HHHHHHHHhhccCCEEEEE
Confidence              0011 2347999987654 2          1346678889999998764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.28  E-value=0.24  Score=36.30  Aligned_cols=105  Identities=13%  Similarity=0.123  Sum_probs=56.6

Q ss_pred             cCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|+=+|||. |......+......|+++|.+++.++.++..               ..+.++.+|..+....... 
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~---------------~g~~~~~~d~~~~~~l~~~-   80 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSE---------------FSGFTVVGDAAEFETLKEC-   80 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTT---------------CCSEEEESCTTSHHHHHTT-
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhc---------------CCCcEEEecCCCHHHHHHc-
Confidence            4678999999875 4433333333334799999988654433210               1134556665432210000 


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      .-..+|+|+....-       ......+..+.+.+.+...++....+..
T Consensus        81 ~~~~ad~Vi~~~~~-------~~~~~~~~~~~~~~~~~~~iv~~~~~~~  122 (155)
T 2g1u_A           81 GMEKADMVFAFTND-------DSTNFFISMNARYMFNVENVIARVYDPE  122 (155)
T ss_dssp             TGGGCSEEEECSSC-------HHHHHHHHHHHHHTSCCSEEEEECSSGG
T ss_pred             CcccCCEEEEEeCC-------cHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence            12457988865422       2233344445555666677777666554

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.19  E-value=0.09  Score=43.57  Aligned_cols=91  Identities=14%  Similarity=-0.014  Sum_probs=57.4

Q ss_pred             HhccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           80 LYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ....++++||-.|+|. |..+..+++....+|++++ +++-++.+++.-.               -.++ .|...+    
T Consensus       138 ~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa---------------~~v~-~d~~~v----  196 (315)
T 3goh_A          138 IPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGV---------------RHLY-REPSQV----  196 (315)
T ss_dssp             SCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTE---------------EEEE-SSGGGC----
T ss_pred             cCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCC---------------CEEE-cCHHHh----
Confidence            3456889999999964 6666666664333899999 9988888876432               1122 131111    


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                          ...+|+|+-...-.           .+..+.+.|+++|+++..-
T Consensus       197 ----~~g~Dvv~d~~g~~-----------~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          197 ----TQKYFAIFDAVNSQ-----------NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             ----CSCEEEEECC------------------TTGGGEEEEEEEEEEC
T ss_pred             ----CCCccEEEECCCch-----------hHHHHHHHhcCCCEEEEEe
Confidence                46799997432211           1255788999999988763

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=92.83  E-value=0.27  Score=41.30  Aligned_cols=94  Identities=15%  Similarity=0.134  Sum_probs=58.0

Q ss_pred             CCCeEEEec-CCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--cccc
Q 024797           84 RGDVVLDLA-CGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDKV  159 (262)
Q Consensus        84 ~~~~vLDiG-cG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~~  159 (262)
                      ++.+||-.| +|. |..+..+++....+|+++|.+++-++.+++.-.               ..++..+ .++.  ....
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa---------------~~vi~~~-~~~~~~~~~~  213 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGA---------------DIVLNHK-ESLLNQFKTQ  213 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTC---------------SEEECTT-SCHHHHHHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC---------------cEEEECC-ccHHHHHHHh
Confidence            788999994 553 555666665444489999999998888887422               1111111 0110  0001


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        ....+|+|+-...-          ...+..+.+.|+++|.++..
T Consensus       214 --~~~g~Dvv~d~~g~----------~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          214 --GIELVDYVFCTFNT----------DMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             --TCCCEEEEEESSCH----------HHHHHHHHHHEEEEEEEEES
T ss_pred             --CCCCccEEEECCCc----------hHHHHHHHHHhccCCEEEEE
Confidence              23579999854321          23567788999999998753

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=92.81  E-value=0.53  Score=39.36  Aligned_cols=103  Identities=15%  Similarity=0.111  Sum_probs=60.0

Q ss_pred             HHhccCCCeEEEecCCCCc-chHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797           79 QLYARRGDVVLDLACGKGG-DLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~G~-~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (262)
                      .....++++||-+|+|++. ....+++ ....+|+++|.+++-++.+++.-..            .-+.....|..+. .
T Consensus       158 ~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~------------~~i~~~~~~~~~~-v  224 (348)
T 4eez_A          158 VSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD------------VTINSGDVNPVDE-I  224 (348)
T ss_dssp             HHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS------------EEEEC-CCCHHHH-H
T ss_pred             ccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe------------EEEeCCCCCHHHH-h
Confidence            3445789999999998743 3334444 3456899999999988888765431            0011111121110 0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .... ....+|.++....-          ...+....+.|+++|.+++.
T Consensus       225 ~~~t-~g~g~d~~~~~~~~----------~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          225 KKIT-GGLGVQSAIVCAVA----------RIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             HHHT-TSSCEEEEEECCSC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred             hhhc-CCCCceEEEEeccC----------cchhheeheeecCCceEEEE
Confidence            0011 23357777643322          23567788899999998764

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=92.81  E-value=0.23  Score=42.45  Aligned_cols=62  Identities=15%  Similarity=0.071  Sum_probs=43.3

Q ss_pred             hhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--------CCCeEEEEeCChhHHHHHHHHhc
Q 024797           67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--------KIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        67 ~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      +.+..|+...+.......+-.|+|+|.|.|.+...+++.        ..-+++.||+|+...+.-++.+.
T Consensus        63 e~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  132 (387)
T 1zkd_A           63 ELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  132 (387)
T ss_dssp             HHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc
Confidence            344455555555444334457999999999987766541        22379999999998887777665

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=92.61  E-value=0.43  Score=39.53  Aligned_cols=96  Identities=18%  Similarity=0.071  Sum_probs=57.2

Q ss_pred             HHHhccCCCeEEEec-CCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc-c
Q 024797           78 VQLYARRGDVVLDLA-CGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-V  154 (262)
Q Consensus        78 ~~~~~~~~~~vLDiG-cG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~  154 (262)
                      ......++++||-.| +|. |..+..+++....+|++++ +++.++.+++.-.               -.++..+-.+ +
T Consensus       146 ~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~lGa---------------~~~i~~~~~~~~  209 (321)
T 3tqh_A          146 NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKALGA---------------EQCINYHEEDFL  209 (321)
T ss_dssp             HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHHHTC---------------SEEEETTTSCHH
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHHcCC---------------CEEEeCCCcchh
Confidence            344567899999996 554 6666667665444888887 4555666665322               1122111111 1


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ..     .-..+|+|+-.-.-       +    .+....+.|+++|.++..
T Consensus       210 ~~-----~~~g~D~v~d~~g~-------~----~~~~~~~~l~~~G~iv~~  244 (321)
T 3tqh_A          210 LA-----ISTPVDAVIDLVGG-------D----VGIQSIDCLKETGCIVSV  244 (321)
T ss_dssp             HH-----CCSCEEEEEESSCH-------H----HHHHHGGGEEEEEEEEEC
T ss_pred             hh-----hccCCCEEEECCCc-------H----HHHHHHHhccCCCEEEEe
Confidence            11     12469999853321       1    236788999999998865

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=92.47  E-value=0.24  Score=41.69  Aligned_cols=96  Identities=13%  Similarity=-0.017  Sum_probs=57.8

Q ss_pred             hccCCCeEEEecCC--CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc--
Q 024797           81 YARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL--  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--  156 (262)
                      ...++.+||-.|++  .|..+..+++....+|+++|.+++.++.+++.-.              .. .+  |..+...  
T Consensus       159 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~--------------~~-~~--~~~~~~~~~  221 (354)
T 2j8z_A          159 NVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGA--------------AA-GF--NYKKEDFSE  221 (354)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC--------------SE-EE--ETTTSCHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC--------------cE-EE--ecCChHHHH
Confidence            34678999999853  3555555555444489999999988888854321              01 11  1111110  


Q ss_pred             --ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 --DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 --~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        .... ....+|+|+.+..-.           .+....+.|+++|.+++.
T Consensus       222 ~~~~~~-~~~~~d~vi~~~G~~-----------~~~~~~~~l~~~G~iv~~  260 (354)
T 2j8z_A          222 ATLKFT-KGAGVNLILDCIGGS-----------YWEKNVNCLALDGRWVLY  260 (354)
T ss_dssp             HHHHHT-TTSCEEEEEESSCGG-----------GHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHh-cCCCceEEEECCCch-----------HHHHHHHhccCCCEEEEE
Confidence              0001 234699998655432           246677889999998764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=92.31  E-value=0.092  Score=44.10  Aligned_cols=96  Identities=17%  Similarity=0.017  Sum_probs=57.1

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhcCCC-eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (262)
                      .. ++++||-+|+|. |..+..+++.... +|+++|.+++.++.+++. .               ..++..+-.++.  .
T Consensus       162 ~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a---------------~~v~~~~~~~~~~~~  224 (343)
T 2dq4_A          162 GV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A---------------DRLVNPLEEDLLEVV  224 (343)
T ss_dssp             CC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C---------------SEEECTTTSCHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H---------------HhccCcCccCHHHHH
Confidence            45 789999999854 5555566654433 799999998776666443 2               111111101110  0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ...  ....+|+|+-...-          ...+....+.|+++|.++..
T Consensus       225 ~~~--~~~g~D~vid~~g~----------~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          225 RRV--TGSGVEVLLEFSGN----------EAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             HHH--HSSCEEEEEECSCC----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HHh--cCCCCCEEEECCCC----------HHHHHHHHHHHhcCCEEEEE
Confidence            000  12469999854432          13467788899999998764

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=92.20  E-value=0.14  Score=42.10  Aligned_cols=92  Identities=17%  Similarity=0.075  Sum_probs=57.8

Q ss_pred             ccCCCeEEEecC-C-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc-ccccc
Q 024797           82 ARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE-VHLDK  158 (262)
Q Consensus        82 ~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~  158 (262)
                      ..++++||-.|+ | .|..+..+++....+|+++|.+++.++.+++.-.               ...+  |..+ ..+..
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga---------------~~~~--~~~~~~~~~~  185 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGA---------------EEAA--TYAEVPERAK  185 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTC---------------SEEE--EGGGHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC---------------CEEE--ECCcchhHHH
Confidence            568899999998 3 3666666665444489999999988888765211               1111  2111 11110


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .   -..+|+|+. ..-.           .+....+.|+++|+++..
T Consensus       186 ~---~~~~d~vid-~g~~-----------~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          186 A---WGGLDLVLE-VRGK-----------EVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             H---TTSEEEEEE-CSCT-----------THHHHHTTEEEEEEEEEC
T ss_pred             H---hcCceEEEE-CCHH-----------HHHHHHHhhccCCEEEEE
Confidence            0   156999986 3321           356788999999998753

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=92.15  E-value=0.29  Score=45.29  Aligned_cols=119  Identities=13%  Similarity=0.160  Sum_probs=65.0

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-----------CC--CeEEEEeC---ChhHHHHHHHHhccC-----------ccc--c
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-----------KI--GYYVGIDI---AEGSIEDCRTRYNGD-----------ADH--H  134 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-----------~~--~~v~gvD~---s~~~~~~a~~~~~~~-----------~~~--~  134 (262)
                      +.-+|+|+|.|+|...+...+.           ..  -+++.+|.   +.+.+..+-..+.+.           ...  .
T Consensus        58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  137 (689)
T 3pvc_A           58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG  137 (689)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred             CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence            4469999999999876655431           11  25899998   444444433222211           000  0


Q ss_pred             ccc---cCCCCCeEEEeCccccccccccc-CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          135 QRR---KKFSFPARLICGDCYEVHLDKVL-ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       135 ~~~---~~~~~~v~~~~~d~~~~~~~~~~-~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      ...   ......+++..+|+.+.- ..+. .....+|.++....--.. .+..=...++..+.+++++||.+.-
T Consensus       138 ~~r~~~~~~~~~l~l~~gd~~~~l-~~~~~~~~~~~da~flD~f~p~~-np~~w~~~~~~~l~~~~~~g~~~~t  209 (689)
T 3pvc_A          138 CHRILLADGAITLDLWFGDVNTLL-PTLDDSLNNQVDAWFLDGFAPAK-NPDMWNEQLFNAMARMTRPGGTFST  209 (689)
T ss_dssp             EEEEEETTTTEEEEEEESCHHHHG-GGCCGGGTTCEEEEEECSSCC---CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred             ceEEEecCCcEEEEEEccCHHHHH-hhcccccCCceeEEEECCCCCCC-ChhhhhHHHHHHHHHHhCCCCEEEe
Confidence            000   011234667888875532 1110 014789999987632110 0000025688999999999998654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=92.10  E-value=0.55  Score=36.43  Aligned_cols=98  Identities=11%  Similarity=0.009  Sum_probs=58.1

Q ss_pred             eEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           87 VVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        87 ~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      +|+=+|+|  ..+..+++   .....|+++|.+++.++...+...               +.++.+|..+....... .-
T Consensus         2 ~iiIiG~G--~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~---------------~~~i~gd~~~~~~l~~a-~i   63 (218)
T 3l4b_C            2 KVIIIGGE--TTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLK---------------ATIIHGDGSHKEILRDA-EV   63 (218)
T ss_dssp             CEEEECCH--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSS---------------SEEEESCTTSHHHHHHH-TC
T ss_pred             EEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcC---------------CeEEEcCCCCHHHHHhc-Cc
Confidence            46777764  45544433   334479999999988877654433               66789998764321110 12


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      ...|+|++...-       ......+....+.+.+...++..+.+.
T Consensus        64 ~~ad~vi~~~~~-------d~~n~~~~~~a~~~~~~~~iia~~~~~  102 (218)
T 3l4b_C           64 SKNDVVVILTPR-------DEVNLFIAQLVMKDFGVKRVVSLVNDP  102 (218)
T ss_dssp             CTTCEEEECCSC-------HHHHHHHHHHHHHTSCCCEEEECCCSG
T ss_pred             ccCCEEEEecCC-------cHHHHHHHHHHHHHcCCCeEEEEEeCc
Confidence            467888864322       233445555666666777777655443

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=91.90  E-value=0.24  Score=41.16  Aligned_cols=96  Identities=13%  Similarity=0.073  Sum_probs=58.0

Q ss_pred             hccCCCeEEEecCC--CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc--
Q 024797           81 YARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL--  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--  156 (262)
                      ...++.+||-.|++  .|..+..+++....+|+++|.+++.++.+++.-.               ...+  |..+...  
T Consensus       137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~---------------~~~~--~~~~~~~~~  199 (327)
T 1qor_A          137 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA---------------WQVI--NYREEDLVE  199 (327)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC---------------SEEE--ETTTSCHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC---------------CEEE--ECCCccHHH
Confidence            34578999999943  3555555554333489999999988888776321               0111  2111111  


Q ss_pred             --ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 --DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 --~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        .... ....+|+|+.+..-           ..+..+.+.|+++|.++..
T Consensus       200 ~~~~~~-~~~~~D~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~  238 (327)
T 1qor_A          200 RLKEIT-GGKKVRVVYDSVGR-----------DTWERSLDCLQRRGLMVSF  238 (327)
T ss_dssp             HHHHHT-TTCCEEEEEECSCG-----------GGHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHh-CCCCceEEEECCch-----------HHHHHHHHHhcCCCEEEEE
Confidence              0001 23469999876542           2357788899999998764

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=91.88  E-value=0.22  Score=41.24  Aligned_cols=90  Identities=13%  Similarity=0.043  Sum_probs=56.3

Q ss_pred             eEEEecC-C-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           87 VVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        87 ~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      +||-.|+ | .|..+..+++....+|++++.+++-++.+++.-..              ..+-..+...  ....  ..+
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~--------------~vi~~~~~~~--~~~~--~~~  210 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGAN--------------RILSRDEFAE--SRPL--EKQ  210 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCS--------------EEEEGGGSSC--CCSS--CCC
T ss_pred             eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCC--------------EEEecCCHHH--HHhh--cCC
Confidence            4999997 3 36666677665444899999999999988764221              1111111111  1000  245


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .+|+|+-..       ..    ..+..+.+.|+++|+++..
T Consensus       211 ~~d~v~d~~-------g~----~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          211 LWAGAIDTV-------GD----KVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             CEEEEEESS-------CH----HHHHHHHHTEEEEEEEEEC
T ss_pred             CccEEEECC-------Cc----HHHHHHHHHHhcCCEEEEE
Confidence            799887432       11    2678889999999998864

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=91.79  E-value=0.44  Score=39.68  Aligned_cols=96  Identities=20%  Similarity=0.227  Sum_probs=58.4

Q ss_pred             hccCCCeEEEecC--CCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc--
Q 024797           81 YARRGDVVLDLAC--GKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL--  156 (262)
Q Consensus        81 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--  156 (262)
                      ...++.+||-.|+  |.|..+..+++....+|+++|.+++.++.+++.-.              .. .+  |..+...  
T Consensus       142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~--------------~~-~~--d~~~~~~~~  204 (333)
T 1wly_A          142 KVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGC--------------HH-TI--NYSTQDFAE  204 (333)
T ss_dssp             CCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC--------------SE-EE--ETTTSCHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC--------------CE-EE--ECCCHHHHH
Confidence            3467889999996  34555555555444489999999988887765321              01 11  2111111  


Q ss_pred             --ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 --DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 --~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        .... ....+|+|+.+..-           ..+..+.+.|+++|.++..
T Consensus       205 ~i~~~~-~~~~~d~vi~~~g~-----------~~~~~~~~~l~~~G~iv~~  243 (333)
T 1wly_A          205 VVREIT-GGKGVDVVYDSIGK-----------DTLQKSLDCLRPRGMCAAY  243 (333)
T ss_dssp             HHHHHH-TTCCEEEEEECSCT-----------TTHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHh-CCCCCeEEEECCcH-----------HHHHHHHHhhccCCEEEEE
Confidence              0000 13469999865432           2356788899999998764

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=91.48  E-value=1.6  Score=31.55  Aligned_cols=104  Identities=12%  Similarity=-0.067  Sum_probs=59.9

Q ss_pred             CCeEEEecCCCCcchHHHHh---cCCCeEEEEeCC-hhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           85 GDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIA-EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s-~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..+|+=+|+|  ..+..+++   .....|+.+|.+ ++.++.......             ..+.++.+|..+.......
T Consensus         3 ~~~vlI~G~G--~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-------------~~~~~i~gd~~~~~~l~~a   67 (153)
T 1id1_A            3 KDHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-------------DNADVIPGDSNDSSVLKKA   67 (153)
T ss_dssp             CSCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-------------TTCEEEESCTTSHHHHHHH
T ss_pred             CCcEEEECCC--HHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-------------CCCeEEEcCCCCHHHHHHc
Confidence            3568888875  45444433   333479999997 454444443322             1277889998654321100


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                       .-...|+|++...-       ......+....+.+.|...++....+...
T Consensus        68 -~i~~ad~vi~~~~~-------d~~n~~~~~~a~~~~~~~~ii~~~~~~~~  110 (153)
T 1id1_A           68 -GIDRCRAILALSDN-------DADNAFVVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             -TTTTCSEEEECSSC-------HHHHHHHHHHHHHHTSSSCEEEECSSGGG
T ss_pred             -ChhhCCEEEEecCC-------hHHHHHHHHHHHHHCCCCEEEEEECCHHH
Confidence             12467888864422       23344555666777777888887766543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.39  E-value=0.44  Score=43.93  Aligned_cols=119  Identities=13%  Similarity=0.104  Sum_probs=66.1

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-----------CC--CeEEEEeC---ChhHHHHHHHHhccC-----------cccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-----------KI--GYYVGIDI---AEGSIEDCRTRYNGD-----------ADHHQR  136 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-----------~~--~~v~gvD~---s~~~~~~a~~~~~~~-----------~~~~~~  136 (262)
                      +.-+|||+|-|+|......++.           ..  -++++++.   +.+.+..+-..+.+.           ......
T Consensus        66 ~~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~  145 (676)
T 3ps9_A           66 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  145 (676)
T ss_dssp             SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSE
T ss_pred             CceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCC
Confidence            3458999999999876654331           11  24899998   777776554432211           000000


Q ss_pred             -----ccCCCCCeEEEeCccccccccccc-CCCCCeeEEEEcccccccCCCHHH-HHHHHHHHHhccCCCcEEEEE
Q 024797          137 -----RKKFSFPARLICGDCYEVHLDKVL-ADDAPFDICSCQFAMHYSWSTEAR-ARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       137 -----~~~~~~~v~~~~~d~~~~~~~~~~-~~~~~fD~V~~~~~l~~~~~~~~~-~~~~l~~~~~~L~~gG~li~~  205 (262)
                           -......+++..+|+.+.- ..+. .....||+++....-...  +++. -..++..+.+.++|||.+.-.
T Consensus       146 ~~~~~~~~~~~~l~l~~gd~~~~l-~~~~~~~~~~~d~~~~D~f~p~~--np~~w~~~~~~~l~~~~~~g~~~~t~  218 (676)
T 3ps9_A          146 CHRLLLDAGRVTLDLWFGDINELT-SQLDDSLNQKVDAWFLDGFAPAK--NPDMWTQNLFNAMARLARPGGTLATF  218 (676)
T ss_dssp             EEEEEEGGGTEEEEEEESCHHHHG-GGBCGGGTTCEEEEEECCSCGGG--CGGGSCHHHHHHHHHHEEEEEEEEES
T ss_pred             ceEEEecCCcEEEEEecCCHHHHH-HhcccccCCcccEEEECCCCCcC--ChhhhhHHHHHHHHHHhCCCCEEEec
Confidence                 0001133556677765431 1110 014679999986632111  1111 256889999999999987643

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=91.32  E-value=0.6  Score=40.98  Aligned_cols=102  Identities=11%  Similarity=0.073  Sum_probs=61.2

Q ss_pred             CCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           85 GDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..+|+=+|||.  .+..+++   .....|+.+|.+++.++.+.+.+.               +..++||+.+.....-. 
T Consensus         3 ~M~iiI~G~G~--vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~---------------~~~i~Gd~~~~~~L~~A-   64 (461)
T 4g65_A            3 AMKIIILGAGQ--VGGTLAENLVGENNDITIVDKDGDRLRELQDKYD---------------LRVVNGHASHPDVLHEA-   64 (461)
T ss_dssp             CEEEEEECCSH--HHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSS---------------CEEEESCTTCHHHHHHH-
T ss_pred             cCEEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcC---------------cEEEEEcCCCHHHHHhc-
Confidence            45788888874  4444443   333369999999999998887765               77899998775532111 


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      .-...|++++.-.       .+...-+...+.+.+-+.-..+.-+.++++
T Consensus        65 gi~~ad~~ia~t~-------~De~Nl~~~~~Ak~~~~~~~~iar~~~~~~  107 (461)
T 4g65_A           65 GAQDADMLVAVTN-------TDETNMAACQVAFTLFNTPNRIARIRSPQY  107 (461)
T ss_dssp             TTTTCSEEEECCS-------CHHHHHHHHHHHHHHHCCSSEEEECCCHHH
T ss_pred             CCCcCCEEEEEcC-------ChHHHHHHHHHHHHhcCCccceeEeccchh
Confidence            2356788875321       122233334455555455555555555443

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=91.31  E-value=0.22  Score=41.99  Aligned_cols=96  Identities=20%  Similarity=0.137  Sum_probs=57.9

Q ss_pred             hccCCCeEEEecCC--CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc--
Q 024797           81 YARRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL--  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--  156 (262)
                      ...++++||-.|++  .|..+..+++....+|+++|.+++.++.+++.-.               ...+  |..+...  
T Consensus       167 ~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga---------------~~~~--d~~~~~~~~  229 (351)
T 1yb5_A          167 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA---------------HEVF--NHREVNYID  229 (351)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---------------SEEE--ETTSTTHHH
T ss_pred             CCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCC---------------CEEE--eCCCchHHH
Confidence            34678999999973  3555555555444489999999988887654311               0111  1111111  


Q ss_pred             --ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 --DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 --~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        .... ....+|+|+.+..-           ..+....+.|+++|.++..
T Consensus       230 ~~~~~~-~~~~~D~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~  268 (351)
T 1yb5_A          230 KIKKYV-GEKGIDIIIEMLAN-----------VNLSKDLSLLSHGGRVIVV  268 (351)
T ss_dssp             HHHHHH-CTTCEEEEEESCHH-----------HHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHc-CCCCcEEEEECCCh-----------HHHHHHHHhccCCCEEEEE
Confidence              0000 23469999865421           2456778999999998764

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=91.22  E-value=0.6  Score=40.81  Aligned_cols=46  Identities=22%  Similarity=0.214  Sum_probs=34.5

Q ss_pred             hccCCCeEEEecC-CC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 024797           81 YARRGDVVLDLAC-GK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTR  126 (262)
Q Consensus        81 ~~~~~~~vLDiGc-G~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~  126 (262)
                      ...++++||-+|+ |. |..+..+++....++++++.+++-++.+++.
T Consensus       225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~l  272 (456)
T 3krt_A          225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAM  272 (456)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhh
Confidence            3568899999998 43 6566666665555889999999888888764

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=91.10  E-value=0.37  Score=39.98  Aligned_cols=97  Identities=14%  Similarity=0.034  Sum_probs=56.0

Q ss_pred             ccCCC-eEEEecC-C-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           82 ARRGD-VVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        82 ~~~~~-~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ..++. +||-.|+ | .|..+..+++....++++++.+++-++.+++.-..              ..+-..+........
T Consensus       146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~--------------~~i~~~~~~~~~~~~  211 (328)
T 1xa0_A          146 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK--------------EVLAREDVMAERIRP  211 (328)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS--------------EEEECC---------
T ss_pred             CCCCCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCc--------------EEEecCCcHHHHHHH
Confidence            45664 8999997 3 36666666664444799999998888888653210              001011110000000


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .  ..+.+|+|+-...-.           .+....+.|+++|++++.
T Consensus       212 ~--~~~~~d~vid~~g~~-----------~~~~~~~~l~~~G~~v~~  245 (328)
T 1xa0_A          212 L--DKQRWAAAVDPVGGR-----------TLATVLSRMRYGGAVAVS  245 (328)
T ss_dssp             C--CSCCEEEEEECSTTT-----------THHHHHHTEEEEEEEEEC
T ss_pred             h--cCCcccEEEECCcHH-----------HHHHHHHhhccCCEEEEE
Confidence            0  234699998543321           356778899999998764

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=91.01  E-value=0.43  Score=45.88  Aligned_cols=45  Identities=20%  Similarity=0.175  Sum_probs=37.2

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      ...+++|+.||.|.++..+...+. ..+.++|+++.+++.-+.++.
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p  584 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP  584 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT
T ss_pred             CCCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC
Confidence            345899999999999988866665 468899999999988887765

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=90.85  E-value=6.3  Score=32.85  Aligned_cols=121  Identities=8%  Similarity=-0.028  Sum_probs=72.6

Q ss_pred             CCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccc-----------cccc---cCCCCCeEEE
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADH-----------HQRR---KKFSFPARLI  147 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----------~~~~---~~~~~~v~~~  147 (262)
                      +...|+-+|||.=.....+...  ....++=||.- +.++.=++.+.+....           ....   .-...+..++
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P-~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v  168 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFP-MIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI  168 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECH-HHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcH-HHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence            4568999999985544444332  23468888874 4444433333311000           0000   0013567889


Q ss_pred             eCcccccccc-c----ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          148 CGDCYEVHLD-K----VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       148 ~~d~~~~~~~-~----~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .+|+.+.... .    .-+....--++++-+++.|+  +++....+++.+.+...+|..++....
T Consensus       169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL--~~~~~~~ll~~ia~~f~~~~~i~yE~i  231 (334)
T 3iei_A          169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYM--TPEQSANLLKWAANSFERAMFINYEQV  231 (334)
T ss_dssp             ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGS--CHHHHHHHHHHHHHHCSSEEEEEEEEC
T ss_pred             ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCC--CHHHHHHHHHHHHHhCCCceEEEEecc
Confidence            9998764221 1    01134556788888999999  889999999999998766655555543

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=90.84  E-value=0.62  Score=40.38  Aligned_cols=58  Identities=16%  Similarity=0.122  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc------CCCeEEEEeCChhHHHHHHHHhc
Q 024797           68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        68 ~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      .+..|+...+....   ...|+|+|.|+|.+...+++.      ...+++.||+|+.+.+.-++++.
T Consensus       124 ~la~~~~~~~~~~g---~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          124 TLARPVAQALDASG---TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             HHHHHHHHHHHHHT---CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC---CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            34455555555442   469999999999987766541      13379999999999888887765

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=90.75  E-value=0.38  Score=40.83  Aligned_cols=98  Identities=19%  Similarity=0.091  Sum_probs=55.9

Q ss_pred             ccCCCeEEEec-CCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLA-CGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiG-cG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++++||-.| +|. |..+..+++....+|++++ +++-++.+++.-.               -.++..  .+..+...
T Consensus       181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa---------------~~v~~~--~~~~~~~~  242 (375)
T 2vn8_A          181 NCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGA---------------DDVIDY--KSGSVEEQ  242 (375)
T ss_dssp             TCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC---------------SEEEET--TSSCHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCC---------------CEEEEC--CchHHHHH
Confidence            46788999999 443 6666666664444799998 6777777654211               111111  11111000


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ......+|+|+-...-.         ...+....+.|+++|.++..-
T Consensus       243 ~~~~~g~D~vid~~g~~---------~~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          243 LKSLKPFDFILDNVGGS---------TETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             HHTSCCBSEEEESSCTT---------HHHHGGGGBCSSSCCEEEESC
T ss_pred             HhhcCCCCEEEECCCCh---------hhhhHHHHHhhcCCcEEEEeC
Confidence            00224699998654321         123466778899999987643

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=90.55  E-value=0.69  Score=38.85  Aligned_cols=97  Identities=9%  Similarity=-0.090  Sum_probs=58.8

Q ss_pred             HhccCC--CeEEEecCCC--CcchHHHHhcCCC-eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           80 LYARRG--DVVLDLACGK--GGDLIKWDKAKIG-YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        80 ~~~~~~--~~vLDiGcG~--G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ....++  .+||-.|++.  |..+..+++.... +|+++|.+++.++.+++.+.               ... ..|..+.
T Consensus       154 ~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g---------------~~~-~~d~~~~  217 (357)
T 2zb4_A          154 GHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELG---------------FDA-AINYKKD  217 (357)
T ss_dssp             SCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC---------------CSE-EEETTTS
T ss_pred             cCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC---------------Cce-EEecCch
Confidence            345678  9999999843  5555555554444 89999999887777765332               110 1122111


Q ss_pred             cc----ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          155 HL----DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       155 ~~----~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ..    ...  ..+.+|+|+.+..-           ..+..+.+.|+++|++++.
T Consensus       218 ~~~~~~~~~--~~~~~d~vi~~~G~-----------~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          218 NVAEQLRES--CPAGVDVYFDNVGG-----------NISDTVISQMNENSHIILC  259 (357)
T ss_dssp             CHHHHHHHH--CTTCEEEEEESCCH-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHHHHh--cCCCCCEEEECCCH-----------HHHHHHHHHhccCcEEEEE
Confidence            11    011  12379999865431           3567788999999998763

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=90.30  E-value=0.35  Score=38.91  Aligned_cols=62  Identities=15%  Similarity=0.280  Sum_probs=39.6

Q ss_pred             eEEEeCcccccccccccCCCCCeeEEEEccccccc---CC---CH----HHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS---WS---TE----ARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       144 v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~~---~~----~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ..++++|+.+.- ..  .++++||+|++.--...-   ++   +.    ......+.++.++|+|||.+++...+
T Consensus         5 ~~l~~gD~~~~l-~~--l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d   76 (260)
T 1g60_A            5 NKIHQMNCFDFL-DQ--VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTP   76 (260)
T ss_dssp             SSEEECCHHHHH-HH--SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECH
T ss_pred             CeEEechHHHHH-Hh--ccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCc
Confidence            457788875421 11  146789999987533210   00   11    24567888899999999999988644

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=90.15  E-value=0.48  Score=39.36  Aligned_cols=96  Identities=15%  Similarity=0.118  Sum_probs=56.3

Q ss_pred             ccCCC-eEEEecC-C-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe-Ccccccccc
Q 024797           82 ARRGD-VVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVHLD  157 (262)
Q Consensus        82 ~~~~~-~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~~~  157 (262)
                      ..++. +||-.|+ | .|..+..+++....++++++.+++-++.+++.-..               ..+. .+.......
T Consensus       147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~---------------~v~~~~~~~~~~~~  211 (330)
T 1tt7_A          147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS---------------EVISREDVYDGTLK  211 (330)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS---------------EEEEHHHHCSSCCC
T ss_pred             cCCCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCc---------------EEEECCCchHHHHH
Confidence            45564 8999998 3 35555566554334799999998888888763220               1111 110000000


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ..  ....+|+|+-...-           ..+....+.|+++|+++..
T Consensus       212 ~~--~~~~~d~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  246 (330)
T 1tt7_A          212 AL--SKQQWQGAVDPVGG-----------KQLASLLSKIQYGGSVAVS  246 (330)
T ss_dssp             SS--CCCCEEEEEESCCT-----------HHHHHHHTTEEEEEEEEEC
T ss_pred             Hh--hcCCccEEEECCcH-----------HHHHHHHHhhcCCCEEEEE
Confidence            00  23469998754321           1467788999999998764

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=90.14  E-value=0.75  Score=38.83  Aligned_cols=91  Identities=14%  Similarity=-0.045  Sum_probs=55.2

Q ss_pred             CCeEEEecCCC-CcchHHHHhcCCCeEEEEeCCh---hHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           85 GDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAE---GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        85 ~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~---~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      +.+||-+|+|. |..+..+++....+|+++|.++   +.++.+++.-                ...+  | .+ .+....
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~g----------------a~~v--~-~~-~~~~~~  240 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETK----------------TNYY--N-SS-NGYDKL  240 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHT----------------CEEE--E-CT-TCSHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhC----------------Ccee--c-hH-HHHHHH
Confidence            89999999843 4444555543333899999998   7777776532                1112  2 22 110000


Q ss_pred             -CCCCCeeEEEEcccccccCCCHHHHHHHH-HHHHhccCCCcEEEEE
Q 024797          161 -ADDAPFDICSCQFAMHYSWSTEARARRAL-ANVSALLRPGGTFIGT  205 (262)
Q Consensus       161 -~~~~~fD~V~~~~~l~~~~~~~~~~~~~l-~~~~~~L~~gG~li~~  205 (262)
                       ...+.+|+|+......          ..+ +.+.+.|+++|.++..
T Consensus       241 ~~~~~~~d~vid~~g~~----------~~~~~~~~~~l~~~G~iv~~  277 (366)
T 2cdc_A          241 KDSVGKFDVIIDATGAD----------VNILGNVIPLLGRNGVLGLF  277 (366)
T ss_dssp             HHHHCCEEEEEECCCCC----------THHHHHHGGGEEEEEEEEEC
T ss_pred             HHhCCCCCEEEECCCCh----------HHHHHHHHHHHhcCCEEEEE
Confidence             0015699998655432          134 7788999999998764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=89.60  E-value=2.8  Score=33.18  Aligned_cols=108  Identities=14%  Similarity=0.117  Sum_probs=65.3

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc--
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK--  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--  158 (262)
                      .+.++|-.|++.| ++..+++   ....+|+.+|.+++.++...+.+.             .++.++.+|+.+.....  
T Consensus         7 ~gk~~lVTGas~g-IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------------~~~~~~~~Dv~~~~~v~~~   72 (255)
T 4eso_A            7 QGKKAIVIGGTHG-MGLATVRRLVEGGAEVLLTGRNESNIARIREEFG-------------PRVHALRSDIADLNEIAVL   72 (255)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-------------GGEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEECCCCH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-------------CcceEEEccCCCHHHHHHH
Confidence            5678998888765 5554433   233479999999887776665442             24788899987653210  


Q ss_pred             ---ccCCCCCeeEEEEcccccccCC----CHHHHHH-----------HHHHHHhccCCCcEEEEE
Q 024797          159 ---VLADDAPFDICSCQFAMHYSWS----TEARARR-----------ALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ---~~~~~~~fD~V~~~~~l~~~~~----~~~~~~~-----------~l~~~~~~L~~gG~li~~  205 (262)
                         .....+..|+++.+......-+    +.++...           +.+.+...++++|.++..
T Consensus        73 ~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~i  137 (255)
T 4eso_A           73 GAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFT  137 (255)
T ss_dssp             HHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEE
Confidence               0001257999998765432211    3333332           345566666778887765

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=89.60  E-value=1.4  Score=36.41  Aligned_cols=90  Identities=20%  Similarity=0.109  Sum_probs=53.2

Q ss_pred             CCeEEEecCCC-Cc-chHHHHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           85 GDVVLDLACGK-GG-DLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        85 ~~~vLDiGcG~-G~-~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..+|.=||+|. |. ++..+.+.+. ..|+++|.+++.++.+.+.-.               +.-...|..+..      
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~---------------~~~~~~~~~~~~------   91 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI---------------IDEGTTSIAKVE------   91 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS---------------CSEEESCTTGGG------
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC---------------cchhcCCHHHHh------
Confidence            36899999885 32 3333333333 279999999988877764311               111223332200      


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                       -...|+|+..-..       .....++.++...++++..++
T Consensus        92 -~~~aDvVilavp~-------~~~~~vl~~l~~~l~~~~iv~  125 (314)
T 3ggo_A           92 -DFSPDFVMLSSPV-------RTFREIAKKLSYILSEDATVT  125 (314)
T ss_dssp             -GGCCSEEEECSCG-------GGHHHHHHHHHHHSCTTCEEE
T ss_pred             -hccCCEEEEeCCH-------HHHHHHHHHHhhccCCCcEEE
Confidence             1346999865433       234667888888898877554

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=89.33  E-value=0.48  Score=39.69  Aligned_cols=95  Identities=16%  Similarity=0.077  Sum_probs=58.1

Q ss_pred             hccCCCeEEEecC-C-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797           81 YARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (262)
                      ...++++||-+|+ | .|..+..+++....+|+++ .+++.++.+++.-.                ..+. +-.++.  .
T Consensus       147 ~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa----------------~~i~-~~~~~~~~~  208 (343)
T 3gaz_A          147 QVQDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGA----------------TPID-ASREPEDYA  208 (343)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTS----------------EEEE-TTSCHHHHH
T ss_pred             CCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCC----------------CEec-cCCCHHHHH
Confidence            4568899999995 3 3666666666544489999 88888888766422                1121 111110  0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .... ....+|+|+-...-           ..+....+.|+++|.++..
T Consensus       209 ~~~~-~~~g~D~vid~~g~-----------~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          209 AEHT-AGQGFDLVYDTLGG-----------PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             HHHH-TTSCEEEEEESSCT-----------HHHHHHHHHEEEEEEEEES
T ss_pred             HHHh-cCCCceEEEECCCc-----------HHHHHHHHHHhcCCeEEEE
Confidence            0000 23479999854321           2567788899999998864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=88.63  E-value=1.5  Score=34.27  Aligned_cols=99  Identities=8%  Similarity=-0.064  Sum_probs=59.2

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...+|+=+|+|  ..+..+++   .... |+++|.+++.++.++  ..               +.++.+|+.+.......
T Consensus         8 ~~~~viI~G~G--~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~---------------~~~i~gd~~~~~~l~~a   67 (234)
T 2aef_A            8 KSRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKKVLR--SG---------------ANFVHGDPTRVSDLEKA   67 (234)
T ss_dssp             --CEEEEESCC--HHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TT---------------CEEEESCTTCHHHHHHT
T ss_pred             CCCEEEEECCC--hHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cC---------------CeEEEcCCCCHHHHHhc
Confidence            34679999985  45555544   2223 899999998777665  22               67889998754321100


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                       .-...|+|++...      + ......+....+.+.|+..++..+.+..
T Consensus        68 -~i~~ad~vi~~~~------~-d~~n~~~~~~a~~~~~~~~iia~~~~~~  109 (234)
T 2aef_A           68 -NVRGARAVIVDLE------S-DSETIHCILGIRKIDESVRIIAEAERYE  109 (234)
T ss_dssp             -TCTTCSEEEECCS------C-HHHHHHHHHHHHHHCSSSEEEEECSSGG
T ss_pred             -CcchhcEEEEcCC------C-cHHHHHHHHHHHHHCCCCeEEEEECCHh
Confidence             1246788886432      1 2233344555666788778887766543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=88.21  E-value=1.5  Score=37.05  Aligned_cols=95  Identities=7%  Similarity=0.001  Sum_probs=56.1

Q ss_pred             cCCCeEEEecCC--CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--ccc
Q 024797           83 RRGDVVLDLACG--KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LDK  158 (262)
Q Consensus        83 ~~~~~vLDiGcG--~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~~  158 (262)
                      .++.+||-.|++  .|.....+++....+|+++. +++-++.+++.-.               ..++...-.++.  ...
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa---------------~~vi~~~~~~~~~~v~~  226 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGA---------------EEVFDYRAPNLAQTIRT  226 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTC---------------SEEEETTSTTHHHHHHH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCC---------------cEEEECCCchHHHHHHH
Confidence            678899999984  46666677665444788885 8888887765322               112221111110  001


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhcc-CCCcEEEEE
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL-RPGGTFIGT  205 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L-~~gG~li~~  205 (262)
                      .  ..+.+|+|+-.-.-          ...+..+.+.| +++|+++..
T Consensus       227 ~--t~g~~d~v~d~~g~----------~~~~~~~~~~l~~~~G~iv~~  262 (371)
T 3gqv_A          227 Y--TKNNLRYALDCITN----------VESTTFCFAAIGRAGGHYVSL  262 (371)
T ss_dssp             H--TTTCCCEEEESSCS----------HHHHHHHHHHSCTTCEEEEES
T ss_pred             H--ccCCccEEEECCCc----------hHHHHHHHHHhhcCCCEEEEE
Confidence            1  23459999854322          13456677788 699998764

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=88.18  E-value=1.3  Score=36.69  Aligned_cols=62  Identities=19%  Similarity=0.279  Sum_probs=41.2

Q ss_pred             eEEE-eCcccccccccccCCCCCeeEEEEccccccc---C---CC-HHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          144 ARLI-CGDCYEVHLDKVLADDAPFDICSCQFAMHYS---W---ST-EARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       144 v~~~-~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~---~~-~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ..++ ++|+.+.--  . .++++||+|++.--....   +   .. .......+.++.++|+|||.+++.+..
T Consensus        39 ~~l~i~gD~l~~L~--~-l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~  108 (319)
T 1eg2_A           39 RHVYDVCDCLDTLA--K-LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGL  108 (319)
T ss_dssp             EEEEEECCHHHHHH--T-SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             ceEEECCcHHHHHH--h-CccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCc
Confidence            5667 899865311  1 156789999987533210   0   00 134677888999999999999988754

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=88.18  E-value=2.5  Score=33.91  Aligned_cols=111  Identities=14%  Similarity=0.060  Sum_probs=64.5

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCC------------hhHHHHHHHHhccCccccccccCCCCCeEEEe
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIA------------EGSIEDCRTRYNGDADHHQRRKKFSFPARLIC  148 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s------------~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~  148 (262)
                      .+.+||-.|++.| ++..+++   ....+|+.+|.+            .+.++.+......          ...++.++.
T Consensus         9 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~   77 (287)
T 3pxx_A            9 QDKVVLVTGGARG-QGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEK----------TGRKAYTAE   77 (287)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHH----------TTSCEEEEE
T ss_pred             CCCEEEEeCCCCh-HHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHh----------cCCceEEEE
Confidence            4678998888765 5544433   233479999987            5555555444331          134588899


Q ss_pred             Ccccccccc-c----ccCCCCCeeEEEEcccccccC--CCHHHHH-----------HHHHHHHhccCCCcEEEEE
Q 024797          149 GDCYEVHLD-K----VLADDAPFDICSCQFAMHYSW--STEARAR-----------RALANVSALLRPGGTFIGT  205 (262)
Q Consensus       149 ~d~~~~~~~-~----~~~~~~~fD~V~~~~~l~~~~--~~~~~~~-----------~~l~~~~~~L~~gG~li~~  205 (262)
                      +|+.+.... .    ....-+..|+++.+.......  .+.++..           .+++.+...++.+|.++..
T Consensus        78 ~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  152 (287)
T 3pxx_A           78 VDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITT  152 (287)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEe
Confidence            998764321 0    000124789999877553210  1223332           2345666777778887764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=88.05  E-value=3.8  Score=32.47  Aligned_cols=113  Identities=5%  Similarity=-0.063  Sum_probs=65.8

Q ss_pred             CCCeEEEecCC--CCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           84 RGDVVLDLACG--KGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        84 ~~~~vLDiGcG--~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      .+.++|-.|++  .| ++..+++   ....+|+.++.++...+.+.+...+.+         ..++.++.+|+.+.....
T Consensus         6 ~~k~vlVTGasg~~G-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~~~~~v~   75 (266)
T 3oig_A            6 EGRNIVVMGVANKRS-IAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLD---------RNDSIILPCDVTNDAEIE   75 (266)
T ss_dssp             TTCEEEEECCCSTTS-HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSS---------SCCCEEEECCCSSSHHHH
T ss_pred             CCCEEEEEcCCCCCc-HHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcC---------CCCceEEeCCCCCHHHHH
Confidence            46789999876  33 4443332   233479999988776666655544211         225889999987653210


Q ss_pred             -c----cCCCCCeeEEEEcccccc-------c-CCCHHHHH-----------HHHHHHHhccCCCcEEEEEe
Q 024797          159 -V----LADDAPFDICSCQFAMHY-------S-WSTEARAR-----------RALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       159 -~----~~~~~~fD~V~~~~~l~~-------~-~~~~~~~~-----------~~l~~~~~~L~~gG~li~~~  206 (262)
                       .    ....+..|+++.+..+..       + -.+.++..           .+++.+...++++|.++...
T Consensus        76 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is  147 (266)
T 3oig_A           76 TCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT  147 (266)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred             HHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence             0    001257899998765432       0 01333333           24566777788888877653

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=87.79  E-value=1.1  Score=38.93  Aligned_cols=45  Identities=24%  Similarity=0.296  Sum_probs=33.5

Q ss_pred             hccCCCeEEEecC-CC-CcchHHHHhcCCCeEEEEeCChhHHHHHHH
Q 024797           81 YARRGDVVLDLAC-GK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRT  125 (262)
Q Consensus        81 ~~~~~~~vLDiGc-G~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~  125 (262)
                      ...++++||-.|+ |. |..+..+++....++++++.+++-++.+++
T Consensus       217 ~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~  263 (447)
T 4a0s_A          217 QMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA  263 (447)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence            3568899999998 32 555666666555588999999988888865

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=87.33  E-value=0.39  Score=40.79  Aligned_cols=100  Identities=10%  Similarity=0.070  Sum_probs=52.8

Q ss_pred             CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ++.+|+-+|+|. |......+.....+|+++|.+++.++.+.+...             ..+.....+..++.  ..   
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g-------------~~~~~~~~~~~~l~--~~---  226 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFG-------------GRVITLTATEANIK--KS---  226 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTT-------------TSEEEEECCHHHHH--HH---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcC-------------ceEEEecCCHHHHH--HH---
Confidence            468999999863 333333333333389999999988777765432             11211111111111  01   


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      -..+|+|+........    ..+..+.++..+.+++||.++..
T Consensus       227 ~~~~DvVi~~~g~~~~----~~~~li~~~~l~~mk~gg~iV~v  265 (369)
T 2eez_A          227 VQHADLLIGAVLVPGA----KAPKLVTRDMLSLMKEGAVIVDV  265 (369)
T ss_dssp             HHHCSEEEECCC-----------CCSCHHHHTTSCTTCEEEEC
T ss_pred             HhCCCEEEECCCCCcc----ccchhHHHHHHHhhcCCCEEEEE
Confidence            1357999865443210    11112245677888999987653

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=87.18  E-value=4.3  Score=32.85  Aligned_cols=112  Identities=16%  Similarity=0.111  Sum_probs=64.3

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChh-HHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc-
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEG-SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~-~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-  158 (262)
                      .+.+||-.|++.| ++..+++   ....+|+.+|.+.. ..+...+...          ....++.++.+|+.+..... 
T Consensus        46 ~gk~vlVTGas~G-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~----------~~~~~~~~~~~Dv~d~~~v~~  114 (291)
T 3ijr_A           46 KGKNVLITGGDSG-IGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVE----------KEGVKCVLLPGDLSDEQHCKD  114 (291)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH----------TTTCCEEEEESCTTSHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHH----------hcCCcEEEEECCCCCHHHHHH
Confidence            5678999998765 5554433   23347889988765 3333333333          12345888999987643210 


Q ss_pred             ----ccCCCCCeeEEEEcccccccCC-----CHHHHH-----------HHHHHHHhccCCCcEEEEEe
Q 024797          159 ----VLADDAPFDICSCQFAMHYSWS-----TEARAR-----------RALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       159 ----~~~~~~~fD~V~~~~~l~~~~~-----~~~~~~-----------~~l~~~~~~L~~gG~li~~~  206 (262)
                          ....-+..|+++.+........     +.++..           .+++.+...++.+|.++...
T Consensus       115 ~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is  182 (291)
T 3ijr_A          115 IVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA  182 (291)
T ss_dssp             HHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred             HHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence                0001257899998754432111     333332           34556677778888877653

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=87.12  E-value=2.8  Score=34.72  Aligned_cols=98  Identities=7%  Similarity=-0.089  Sum_probs=60.4

Q ss_pred             CCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           85 GDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..+|+=+|+|  ..+..+++   .... |+.+|.+++.++ +++ .               .+.++.+|+.+....... 
T Consensus       115 ~~~viI~G~G--~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~-~---------------~~~~i~gd~~~~~~L~~a-  173 (336)
T 1lnq_A          115 SRHVVICGWS--ESTLECLRELRGSEV-FVLAEDENVRKK-VLR-S---------------GANFVHGDPTRVSDLEKA-  173 (336)
T ss_dssp             -CEEEEESCC--HHHHHHHTTGGGSCE-EEEESCGGGHHH-HHH-T---------------TCEEEESCTTSHHHHHHT-
T ss_pred             cCCEEEECCc--HHHHHHHHHHHhCCc-EEEEeCChhhhh-HHh-C---------------CcEEEEeCCCCHHHHHhc-
Confidence            4578888875  45555544   2333 999999998887 543 1               277899998765421111 


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      .-...|.|++...      + +..........+.+.|...++....+.+
T Consensus       174 ~i~~a~~vi~~~~------~-d~~n~~~~~~ar~~~~~~~iiar~~~~~  215 (336)
T 1lnq_A          174 NVRGARAVIVDLE------S-DSETIHCILGIRKIDESVRIIAEAERYE  215 (336)
T ss_dssp             CSTTEEEEEECCS------S-HHHHHHHHHHHHTTCTTSEEEEECSSGG
T ss_pred             ChhhccEEEEcCC------c-cHHHHHHHHHHHHHCCCCeEEEEECCHH
Confidence            2356888886431      1 2333344556677788878887765543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=86.33  E-value=0.25  Score=42.23  Aligned_cols=44  Identities=11%  Similarity=0.142  Sum_probs=30.5

Q ss_pred             CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY  127 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~  127 (262)
                      ++.+|+=+|+|. |......++....+|+++|.+++.++.+++.+
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~  211 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF  211 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc
Confidence            578999999964 43344444333338999999998887776643

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=86.19  E-value=2.5  Score=29.67  Aligned_cols=101  Identities=10%  Similarity=-0.032  Sum_probs=51.9

Q ss_pred             CCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           85 GDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..+|+=+|+|.  .+..+++   .....|+++|.+++.++.+++.                ...++.+|..+....... 
T Consensus         6 ~~~v~I~G~G~--iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~----------------~~~~~~~d~~~~~~l~~~-   66 (144)
T 2hmt_A            6 NKQFAVIGLGR--FGGSIVKELHRMGHEVLAVDINEEKVNAYASY----------------ATHAVIANATEENELLSL-   66 (144)
T ss_dssp             CCSEEEECCSH--HHHHHHHHHHHTTCCCEEEESCHHHHHTTTTT----------------CSEEEECCTTCHHHHHTT-
T ss_pred             CCcEEEECCCH--HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh----------------CCEEEEeCCCCHHHHHhc-
Confidence            45799999853  4443332   2334689999987654433211                134566776542210000 


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      .-..+|+|+......      ......+....+.+.+. .+++...+...
T Consensus        67 ~~~~~d~vi~~~~~~------~~~~~~~~~~~~~~~~~-~ii~~~~~~~~  109 (144)
T 2hmt_A           67 GIRNFEYVIVAIGAN------IQASTLTTLLLKELDIP-NIWVKAQNYYH  109 (144)
T ss_dssp             TGGGCSEEEECCCSC------HHHHHHHHHHHHHTTCS-EEEEECCSHHH
T ss_pred             CCCCCCEEEECCCCc------hHHHHHHHHHHHHcCCC-eEEEEeCCHHH
Confidence            124689988654321      11222334444556665 66666665543

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=85.98  E-value=2.5  Score=34.20  Aligned_cols=108  Identities=14%  Similarity=0.024  Sum_probs=67.0

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc--
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK--  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--  158 (262)
                      +++.+|--|++.| ++..+++   ....+|+.+|.+++.++.+.+.+.             .++..+++|+.+.....  
T Consensus        28 ~gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g-------------~~~~~~~~Dv~~~~~v~~~   93 (273)
T 4fgs_A           28 NAKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIG-------------GGAVGIQADSANLAELDRL   93 (273)
T ss_dssp             TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-------------TTCEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-------------CCeEEEEecCCCHHHHHHH
Confidence            5788898898877 5554433   234489999999988887765543             24677889987643210  


Q ss_pred             ---ccCCCCCeeEEEEcccccccCC----CHHHHHH-----------HHHHHHhccCCCcEEEEE
Q 024797          159 ---VLADDAPFDICSCQFAMHYSWS----TEARARR-----------ALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ---~~~~~~~fD~V~~~~~l~~~~~----~~~~~~~-----------~l~~~~~~L~~gG~li~~  205 (262)
                         ....-++.|+++.+.......+    +.++.++           ..+.+...++.+|.++..
T Consensus        94 ~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IIni  158 (273)
T 4fgs_A           94 YEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLT  158 (273)
T ss_dssp             HHHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEE
T ss_pred             HHHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEE
Confidence               1112378999998765432210    3333322           345566677888887654

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=85.65  E-value=12  Score=29.96  Aligned_cols=83  Identities=8%  Similarity=-0.126  Sum_probs=52.5

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-ccc-c
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLD-K  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~-~  158 (262)
                      .+.+||-.|++.| ++..+++   ....+|++++.++...+.+.+.+...         ...++.++.+|+.+. ... .
T Consensus        11 ~~k~vlITGas~G-IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~---------~~~~~~~~~~Dl~~~~~~v~~   80 (311)
T 3o26_A           11 KRRCAVVTGGNKG-IGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNS---------NHENVVFHQLDVTDPIATMSS   80 (311)
T ss_dssp             -CCEEEESSCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT---------TCCSEEEEECCTTSCHHHHHH
T ss_pred             CCcEEEEecCCch-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---------CCCceEEEEccCCCcHHHHHH
Confidence            4678888888765 5554443   23347999999988777766655421         134588999998775 210 0


Q ss_pred             ----ccCCCCCeeEEEEccccc
Q 024797          159 ----VLADDAPFDICSCQFAMH  176 (262)
Q Consensus       159 ----~~~~~~~fD~V~~~~~l~  176 (262)
                          .....+..|+++.+..+.
T Consensus        81 ~~~~~~~~~g~iD~lv~nAg~~  102 (311)
T 3o26_A           81 LADFIKTHFGKLDILVNNAGVA  102 (311)
T ss_dssp             HHHHHHHHHSSCCEEEECCCCC
T ss_pred             HHHHHHHhCCCCCEEEECCccc
Confidence                000125789999887653

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=85.56  E-value=1.2  Score=39.35  Aligned_cols=89  Identities=11%  Similarity=-0.056  Sum_probs=53.9

Q ss_pred             ccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ..++.+|+-+|+|. |......++....+|+++|.++..++.+++.-                +..  .++.+. .    
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~G----------------a~~--~~l~e~-l----  327 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEG----------------FDV--VTVEEA-I----  327 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT----------------CEE--CCHHHH-G----
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC----------------CEE--ecHHHH-H----
Confidence            35788999999975 44444444433348999999998777665421                121  222221 1    


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                         ...|+|+..-.-.+++ .        .+..+.+++||+++..
T Consensus       328 ---~~aDvVi~atgt~~~i-~--------~~~l~~mk~ggilvnv  360 (494)
T 3ce6_A          328 ---GDADIVVTATGNKDII-M--------LEHIKAMKDHAILGNI  360 (494)
T ss_dssp             ---GGCSEEEECSSSSCSB-C--------HHHHHHSCTTCEEEEC
T ss_pred             ---hCCCEEEECCCCHHHH-H--------HHHHHhcCCCcEEEEe
Confidence               3579998764333321 1        2455678999988754

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=85.09  E-value=0.66  Score=43.56  Aligned_cols=45  Identities=18%  Similarity=0.138  Sum_probs=36.4

Q ss_pred             CCCeEEEecCCCCcchHHHHhcC------CCeEEEEeCChhHHHHHHHHhc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAK------IGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~------~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      +..+|||+-||.|.++.-+...+      ...+.++|+++.+++.-+.++.
T Consensus       211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp  261 (784)
T 4ft4_B          211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP  261 (784)
T ss_dssp             EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT
T ss_pred             CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC
Confidence            34689999999999988775433      4458899999999999888865

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=85.04  E-value=6  Score=32.01  Aligned_cols=112  Identities=10%  Similarity=-0.067  Sum_probs=63.3

Q ss_pred             CCCeEEEecCCCC-cchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc-
Q 024797           84 RGDVVLDLACGKG-GDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G-~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-  158 (262)
                      .+.++|-.|++.| .++..+++   ....+|+.++.++...+.+.+....           ..++.++.+|+.+..... 
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~~~Dv~d~~~v~~   98 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEE-----------LGAFVAGHCDVADAASIDA   98 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHH-----------HTCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHh-----------cCCceEEECCCCCHHHHHH
Confidence            5678999997633 13333322   2334789999887655554443321           123778899987643210 


Q ss_pred             ----ccCCCCCeeEEEEcccccc-------c-CCCHHHHH-----------HHHHHHHhccCCCcEEEEEe
Q 024797          159 ----VLADDAPFDICSCQFAMHY-------S-WSTEARAR-----------RALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       159 ----~~~~~~~fD~V~~~~~l~~-------~-~~~~~~~~-----------~~l~~~~~~L~~gG~li~~~  206 (262)
                          ....-+..|+++.+..+..       + -.+.++..           .+++.+...++.+|.++...
T Consensus        99 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is  169 (293)
T 3grk_A           99 VFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT  169 (293)
T ss_dssp             HHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             HHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence                0001257899998776532       0 01233332           34556667777788877653

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=84.86  E-value=1.9  Score=42.84  Aligned_cols=45  Identities=20%  Similarity=0.168  Sum_probs=36.9

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCC-CeEEEEeCChhHHHHHHHHhc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKI-GYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      ...+++|+.||.|.+...+...+. ..+.++|+++.+++.-+.++.
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p  895 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP  895 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT
T ss_pred             CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC
Confidence            345899999999999988866664 458899999999988877764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=84.54  E-value=4.2  Score=32.22  Aligned_cols=82  Identities=16%  Similarity=0.084  Sum_probs=51.6

Q ss_pred             CCCeEEEecC-CCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc-
Q 024797           84 RGDVVLDLAC-GKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-  158 (262)
Q Consensus        84 ~~~~vLDiGc-G~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-  158 (262)
                      .+.+||-.|+ |.| ++..+++   ....+|+.+|.++..++...+.+.+.         ...++.++.+|+.+..... 
T Consensus        21 ~~k~vlITGasg~G-IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---------~~~~~~~~~~Dl~~~~~v~~   90 (266)
T 3o38_A           21 KGKVVLVTAAAGTG-IGSTTARRALLEGADVVISDYHERRLGETRDQLADL---------GLGRVEAVVCDVTSTEAVDA   90 (266)
T ss_dssp             TTCEEEESSCSSSS-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTT---------CSSCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCCCc-hHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhc---------CCCceEEEEeCCCCHHHHHH
Confidence            4678998887 555 4443332   23347999999988877776665421         1346889999987643210 


Q ss_pred             c----cCCCCCeeEEEEcccc
Q 024797          159 V----LADDAPFDICSCQFAM  175 (262)
Q Consensus       159 ~----~~~~~~fD~V~~~~~l  175 (262)
                      .    ....++.|+++.+..+
T Consensus        91 ~~~~~~~~~g~id~li~~Ag~  111 (266)
T 3o38_A           91 LITQTVEKAGRLDVLVNNAGL  111 (266)
T ss_dssp             HHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHhCCCcEEEECCCc
Confidence            0    0012578999988764

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=84.46  E-value=6.2  Score=31.52  Aligned_cols=87  Identities=14%  Similarity=0.083  Sum_probs=50.2

Q ss_pred             eEEEecCCC-CcchH-HHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           87 VVLDLACGK-GGDLI-KWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        87 ~vLDiGcG~-G~~~~-~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      +|.=||||. |.... .+.+.+. .|+++|.+++.++.+.+. .   .        .  .. ...|..+        . .
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~-g---~--------~--~~-~~~~~~~--------~-~   56 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVER-Q---L--------V--DE-AGQDLSL--------L-Q   56 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT-T---S--------C--SE-EESCGGG--------G-T
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhC-C---C--------C--cc-ccCCHHH--------h-C
Confidence            577788875 33222 2323333 799999999877766432 1   0        0  01 1222221        1 3


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ..|+|+..-       +......++.++...++++..+ +++
T Consensus        57 ~~D~vi~av-------~~~~~~~~~~~l~~~~~~~~~v-v~~   90 (279)
T 2f1k_A           57 TAKIIFLCT-------PIQLILPTLEKLIPHLSPTAIV-TDV   90 (279)
T ss_dssp             TCSEEEECS-------CHHHHHHHHHHHGGGSCTTCEE-EEC
T ss_pred             CCCEEEEEC-------CHHHHHHHHHHHHhhCCCCCEE-EEC
Confidence            579888644       3345677888888888887654 555

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=84.46  E-value=6.8  Score=31.34  Aligned_cols=88  Identities=20%  Similarity=0.154  Sum_probs=50.1

Q ss_pred             eEEEecCCC-CcchHH-HHhcCC-CeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           87 VVLDLACGK-GGDLIK-WDKAKI-GYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        87 ~vLDiGcG~-G~~~~~-l~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      +|.=||+|. |..... +...+. ..|+++|.+++.++.+++.-.               ......|..+.        -
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~---------------~~~~~~~~~~~--------~   59 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI---------------IDEGTTSIAKV--------E   59 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS---------------CSEEESCGGGG--------G
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCC---------------cccccCCHHHH--------h
Confidence            577888875 333322 322232 269999999988776653210               00012222111        1


Q ss_pred             C-CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          164 A-PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       164 ~-~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      . ..|+|+..-       +......++.++...++++..++.
T Consensus        60 ~~~aDvVilav-------p~~~~~~v~~~l~~~l~~~~iv~~   94 (281)
T 2g5c_A           60 DFSPDFVMLSS-------PVRTFREIAKKLSYILSEDATVTD   94 (281)
T ss_dssp             GTCCSEEEECS-------CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             cCCCCEEEEcC-------CHHHHHHHHHHHHhhCCCCcEEEE
Confidence            3 579988643       334456778888888988875543

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=84.41  E-value=5.2  Score=32.42  Aligned_cols=111  Identities=13%  Similarity=0.020  Sum_probs=63.4

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCCh--hHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAE--GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~--~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      .+.++|-.|++.| ++..+++   ....+|+.+|.+.  ...+...+....          ...++.++.+|+.+.....
T Consensus        48 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~d~~~v~  116 (294)
T 3r3s_A           48 KDRKALVTGGDSG-IGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEE----------CGRKAVLLPGDLSDESFAR  116 (294)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHH----------TTCCEEECCCCTTSHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHH----------cCCcEEEEEecCCCHHHHH
Confidence            4678999998765 5554443   2334788888763  334444433331          1345888899987643210


Q ss_pred             -----ccCCCCCeeEEEEcccccccCC-----CHHHHH-----------HHHHHHHhccCCCcEEEEE
Q 024797          159 -----VLADDAPFDICSCQFAMHYSWS-----TEARAR-----------RALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 -----~~~~~~~fD~V~~~~~l~~~~~-----~~~~~~-----------~~l~~~~~~L~~gG~li~~  205 (262)
                           ....-+..|+++.+........     +.++..           .+++.+...++++|.++..
T Consensus       117 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~i  184 (294)
T 3r3s_A          117 SLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITT  184 (294)
T ss_dssp             HHHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEE
T ss_pred             HHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEE
Confidence                 0001257899998776532111     233332           3455667778888887765

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=84.27  E-value=0.41  Score=40.53  Aligned_cols=44  Identities=18%  Similarity=0.088  Sum_probs=30.3

Q ss_pred             CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHh
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRY  127 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~  127 (262)
                      ++.+||=+|+|. |......++....+|+++|.+++-++.+.+..
T Consensus       166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~  210 (361)
T 1pjc_A          166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLF  210 (361)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhh
Confidence            357999999964 43344444432238999999998888877654

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=83.99  E-value=3.6  Score=33.39  Aligned_cols=111  Identities=9%  Similarity=-0.032  Sum_probs=62.9

Q ss_pred             CCCeEEEecCCC-CcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc-
Q 024797           84 RGDVVLDLACGK-GGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-  158 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-  158 (262)
                      .+.++|-.|++. ..++..+++   ....+|+.+|.++...+.+.+....           ...+.++.+|+.+..... 
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~~~Dv~d~~~v~~   97 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAES-----------LGVKLTVPCDVSDAESVDN   97 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH-----------HTCCEEEECCTTCHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHh-----------cCCeEEEEcCCCCHHHHHH
Confidence            467899999864 124443332   2334799999987665555444331           112678899987643210 


Q ss_pred             c----cCCCCCeeEEEEccccccc--------CCCHHHHH-----------HHHHHHHhccCCCcEEEEE
Q 024797          159 V----LADDAPFDICSCQFAMHYS--------WSTEARAR-----------RALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ~----~~~~~~fD~V~~~~~l~~~--------~~~~~~~~-----------~~l~~~~~~L~~gG~li~~  205 (262)
                      .    ...-+..|+++.+..+...        -.+.++..           .+++.+...++.+|.++..
T Consensus        98 ~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~i  167 (296)
T 3k31_A           98 MFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTL  167 (296)
T ss_dssp             HHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred             HHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEE
Confidence            0    0012578999987765321        01333332           2445566677778887765

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=83.90  E-value=7.9  Score=30.52  Aligned_cols=112  Identities=7%  Similarity=-0.123  Sum_probs=64.4

Q ss_pred             cCCCeEEEecCC-CCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           83 RRGDVVLDLACG-KGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        83 ~~~~~vLDiGcG-~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      .++.+||-.|++ +|.++..+++   ....+|+.++.+....+.+++...+           ...+.++.+|+.+.....
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~~~Dv~~~~~v~   80 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAE-----------FGSELVFPCDVADDAQID   80 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHH-----------TTCCCEEECCTTCHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHH-----------cCCcEEEECCCCCHHHHH
Confidence            467899999975 2335554443   2334799999887665555544331           123778899987643210


Q ss_pred             -----ccCCCCCeeEEEEccccccc-------C--CCHHHHHH-----------HHHHHHhccCCCcEEEEE
Q 024797          159 -----VLADDAPFDICSCQFAMHYS-------W--STEARARR-----------ALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 -----~~~~~~~fD~V~~~~~l~~~-------~--~~~~~~~~-----------~l~~~~~~L~~gG~li~~  205 (262)
                           .....+..|+++.+..+...       .  .+.++...           +++.+...++++|.++..
T Consensus        81 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i  152 (271)
T 3ek2_A           81 ALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTL  152 (271)
T ss_dssp             HHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEE
Confidence                 00012579999987755321       0  13344332           345566666677877654

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=83.65  E-value=5.9  Score=31.52  Aligned_cols=112  Identities=18%  Similarity=0.035  Sum_probs=63.6

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeC-ChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc-
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDI-AEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~-s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-  158 (262)
                      .+.++|-.|++.| ++..+++   ....+|+.++. +.+.++...+.+..          ...++.++.+|+.+..... 
T Consensus        17 ~~k~~lVTGas~g-IG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~   85 (270)
T 3is3_A           17 DGKVALVTGSGRG-IGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKA----------LGSDAIAIKADIRQVPEIVK   85 (270)
T ss_dssp             TTCEEEESCTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH----------TTCCEEEEECCTTSHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh----------cCCcEEEEEcCCCCHHHHHH
Confidence            4678898888765 5544433   23336777765 44445554444431          1345888999987643210 


Q ss_pred             c----cCCCCCeeEEEEcccccccCC----CHHHHH-----------HHHHHHHhccCCCcEEEEEe
Q 024797          159 V----LADDAPFDICSCQFAMHYSWS----TEARAR-----------RALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       159 ~----~~~~~~fD~V~~~~~l~~~~~----~~~~~~-----------~~l~~~~~~L~~gG~li~~~  206 (262)
                      .    ...-+..|+++.+......-.    +.++..           .+.+.+...++++|.+++..
T Consensus        86 ~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is  152 (270)
T 3is3_A           86 LFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS  152 (270)
T ss_dssp             HHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred             HHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            0    001257899997765432211    333332           34556777788888877653

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=83.56  E-value=1.8  Score=36.18  Aligned_cols=96  Identities=9%  Similarity=-0.018  Sum_probs=52.5

Q ss_pred             cCC-CeEEEe-cCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--cc
Q 024797           83 RRG-DVVLDL-ACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--LD  157 (262)
Q Consensus        83 ~~~-~~vLDi-GcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~~  157 (262)
                      .++ .+||=. |+|. |..+..+++....+|+++|.+++-++.+++.-.               ...+..+-.++.  ..
T Consensus       162 ~~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga---------------~~~~~~~~~~~~~~v~  226 (349)
T 3pi7_A          162 QEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGA---------------AHVLNEKAPDFEATLR  226 (349)
T ss_dssp             HHCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTC---------------SEEEETTSTTHHHHHH
T ss_pred             hCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC---------------CEEEECCcHHHHHHHH
Confidence            345 566654 3332 444555555433489999999998888876422               111211111110  00


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ... ....+|+|+-...-       .    .+..+.+.|+++|.+++.
T Consensus       227 ~~~-~~~g~D~vid~~g~-------~----~~~~~~~~l~~~G~iv~~  262 (349)
T 3pi7_A          227 EVM-KAEQPRIFLDAVTG-------P----LASAIFNAMPKRARWIIY  262 (349)
T ss_dssp             HHH-HHHCCCEEEESSCH-------H----HHHHHHHHSCTTCEEEEC
T ss_pred             HHh-cCCCCcEEEECCCC-------h----hHHHHHhhhcCCCEEEEE
Confidence            000 11368999854432       1    236677899999998864

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=82.83  E-value=21  Score=30.22  Aligned_cols=100  Identities=16%  Similarity=0.167  Sum_probs=60.3

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ..+.+||.++-+-|.++..+  .....++.+.-|.-.....+.+              +..+.. .   .....     +
T Consensus        44 ~~~~~~l~~n~~~g~~~~~~--~~~~~~~~~~~~~~~~~~l~~~--------------~~~~~~-~---~~~~~-----~   98 (381)
T 3dmg_A           44 PFGERALDLNPGVGWGSLPL--EGRMAVERLETSRAAFRCLTAS--------------GLQARL-A---LPWEA-----A   98 (381)
T ss_dssp             CCSSEEEESSCTTSTTTGGG--BTTBEEEEEECBHHHHHHHHHT--------------TCCCEE-C---CGGGS-----C
T ss_pred             HhCCcEEEecCCCCcccccc--CCCCceEEEeCcHHHHHHHHHc--------------CCCccc-c---CCccC-----C
Confidence            34578999999999877766  2234666665454333332211              111211 1   11111     3


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      +..||+|++...-+   ......+..|.++.+.|++||.+++.-.+..
T Consensus        99 ~~~~d~v~~~~Pk~---k~~~~~~~~l~~~~~~l~~g~~i~~~g~~~~  143 (381)
T 3dmg_A           99 AGAYDLVVLALPAG---RGTAYVQASLVAAARALRMGGRLYLAGDKNK  143 (381)
T ss_dssp             TTCEEEEEEECCGG---GCHHHHHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred             cCCCCEEEEECCcc---hhHHHHHHHHHHHHHhCCCCCEEEEEEccHH
Confidence            57899998654321   0223567889999999999999988775544

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=82.57  E-value=2  Score=30.66  Aligned_cols=42  Identities=10%  Similarity=-0.020  Sum_probs=26.7

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHh
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRY  127 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~  127 (262)
                      .+.+|+=+|||.  .+..++.   .....++.+|.+++..+...+.+
T Consensus        20 ~~~~v~iiG~G~--iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~   64 (144)
T 3oj0_A           20 GGNKILLVGNGM--LASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKY   64 (144)
T ss_dssp             CCCEEEEECCSH--HHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCEEEEECCCH--HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHh
Confidence            488999999864  3333332   22224999999987766544433

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=82.56  E-value=5  Score=31.63  Aligned_cols=112  Identities=12%  Similarity=0.082  Sum_probs=62.5

Q ss_pred             CCCeEEEecCCCCcchHHHHh---c-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-c
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---A-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~  158 (262)
                      ++.+||-.|++. .++..+++   . ....|++++.++..++...+.+...          ..++.++.+|+.+.... .
T Consensus         3 ~~k~vlITGasg-gIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~----------~~~~~~~~~Dl~~~~~~~~   71 (276)
T 1wma_A            3 GIHVALVTGGNK-GIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAE----------GLSPRFHQLDIDDLQSIRA   71 (276)
T ss_dssp             CCCEEEESSCSS-HHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHT----------TCCCEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhc----------CCeeEEEECCCCCHHHHHH
Confidence            456788777654 45555443   2 3447999999887666655544311          23478889998764311 0


Q ss_pred             cc----CCCCCeeEEEEcccccccC---CC-HHHHH-----------HHHHHHHhccCCCcEEEEEe
Q 024797          159 VL----ADDAPFDICSCQFAMHYSW---ST-EARAR-----------RALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       159 ~~----~~~~~fD~V~~~~~l~~~~---~~-~~~~~-----------~~l~~~~~~L~~gG~li~~~  206 (262)
                      ..    ...+.+|+|+.+.......   .. .++..           .+++.+...++++|.+++..
T Consensus        72 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s  138 (276)
T 1wma_A           72 LRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS  138 (276)
T ss_dssp             HHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred             HHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence            00    0114789999876543210   01 23222           24455666666677776653

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=82.22  E-value=6.2  Score=30.47  Aligned_cols=82  Identities=6%  Similarity=-0.123  Sum_probs=49.8

Q ss_pred             CCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           85 GDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      +.++|=.|++.| ++..+++   ....+|+.++.+++.++.+.+.+..         ....++.++.+|+.+........
T Consensus         2 ~k~vlITGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---------~~~~~~~~~~~D~~~~~~v~~~~   71 (235)
T 3l77_A            2 MKVAVITGASRG-IGEAIARALARDGYALALGARSVDRLEKIAHELMQ---------EQGVEVFYHHLDVSKAESVEEFS   71 (235)
T ss_dssp             CCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH---------HHCCCEEEEECCTTCHHHHHHHC
T ss_pred             CCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh---------hcCCeEEEEEeccCCHHHHHHHH
Confidence            457888887665 5554443   2334799999998877666554421         11345888999987653211100


Q ss_pred             C-----CCCeeEEEEccccc
Q 024797          162 D-----DAPFDICSCQFAMH  176 (262)
Q Consensus       162 ~-----~~~fD~V~~~~~l~  176 (262)
                      .     .+..|+++.+..+.
T Consensus        72 ~~~~~~~g~id~li~~Ag~~   91 (235)
T 3l77_A           72 KKVLERFGDVDVVVANAGLG   91 (235)
T ss_dssp             C-HHHHHSSCSEEEECCCCC
T ss_pred             HHHHHhcCCCCEEEECCccc
Confidence            1     14789999887654

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=82.18  E-value=9.1  Score=30.66  Aligned_cols=79  Identities=14%  Similarity=0.037  Sum_probs=50.1

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc--
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK--  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--  158 (262)
                      .+.++|-.|++.| ++..+++   ....+|+.+|.+++.++.+.+.+.             .++.++.+|+.+.....  
T Consensus        28 ~gk~vlVTGas~g-IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-------------~~~~~~~~Dv~d~~~v~~~   93 (277)
T 3gvc_A           28 AGKVAIVTGAGAG-IGLAVARRLADEGCHVLCADIDGDAADAAATKIG-------------CGAAACRVDVSDEQQIIAM   93 (277)
T ss_dssp             TTCEEEETTTTST-HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC-------------SSCEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC-------------CcceEEEecCCCHHHHHHH
Confidence            5678888888766 5444433   233479999999887776655442             24778899987653210  


Q ss_pred             ---ccCCCCCeeEEEEccccc
Q 024797          159 ---VLADDAPFDICSCQFAMH  176 (262)
Q Consensus       159 ---~~~~~~~fD~V~~~~~l~  176 (262)
                         ....-+..|+++.+....
T Consensus        94 ~~~~~~~~g~iD~lvnnAg~~  114 (277)
T 3gvc_A           94 VDACVAAFGGVDKLVANAGVV  114 (277)
T ss_dssp             HHHHHHHHSSCCEEEECCCCC
T ss_pred             HHHHHHHcCCCCEEEECCCCC
Confidence               000125789999877553

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=81.23  E-value=17  Score=29.28  Aligned_cols=102  Identities=9%  Similarity=-0.055  Sum_probs=51.6

Q ss_pred             CeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        86 ~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      .+|.=+|+|. |......+......|+++|.+++.++..++....  ..     .... ......++....  +....-.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~--~~-----~~~~-~~~~~~~~~~~~--~~~~~~~   73 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLI--AD-----FNGE-EVVANLPIFSPE--EIDHQNE   73 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEE--EE-----ETTE-EEEECCCEECGG--GCCTTSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEE--EE-----eCCC-eeEecceeecch--hhcccCC
Confidence            4788899975 3332222222233799999998877776654210  00     0000 000000000100  0000012


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      ..|+|+..-       +......++..+...++++..++.
T Consensus        74 ~~d~vi~~v-------~~~~~~~v~~~l~~~l~~~~~iv~  106 (316)
T 2ew2_A           74 QVDLIIALT-------KAQQLDAMFKAIQPMITEKTYVLC  106 (316)
T ss_dssp             CCSEEEECS-------CHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred             CCCEEEEEe-------ccccHHHHHHHHHHhcCCCCEEEE
Confidence            689988644       234567788888888887765544

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=81.17  E-value=0.59  Score=39.91  Aligned_cols=42  Identities=19%  Similarity=0.146  Sum_probs=30.1

Q ss_pred             CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHH
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRT  125 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~  125 (262)
                      ++.+|+=+|+|. |.....+++.....|+++|.++...+.+++
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            678999999985 444444444333379999999887777665

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=81.14  E-value=11  Score=30.12  Aligned_cols=111  Identities=14%  Similarity=0.009  Sum_probs=60.9

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhH-HHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-c
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGS-IEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-K  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~-~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~  158 (262)
                      .+.++|-.|++.| ++..+++   ....+|++++.+... .+.+.+.+..          ...++.++.+|+.+.... .
T Consensus        28 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~~~D~~~~~~~~~   96 (283)
T 1g0o_A           28 EGKVALVTGAGRG-IGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKK----------NGSDAACVKANVGVVEDIVR   96 (283)
T ss_dssp             TTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHH----------TTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHH----------hCCCeEEEEcCCCCHHHHHH
Confidence            4678888887765 5555443   233478888887643 3333333321          133478888998664311 0


Q ss_pred             c----cCCCCCeeEEEEcccccccC----CCHHHHHH-----------HHHHHHhccCCCcEEEEE
Q 024797          159 V----LADDAPFDICSCQFAMHYSW----STEARARR-----------ALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ~----~~~~~~fD~V~~~~~l~~~~----~~~~~~~~-----------~l~~~~~~L~~gG~li~~  205 (262)
                      .    ...-+..|+++.+.......    .+.++...           +++.+...++.+|.++..
T Consensus        97 ~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~i  162 (283)
T 1g0o_A           97 MFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM  162 (283)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEE
Confidence            0    00125789999877543210    02333322           345566666677887764

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=81.12  E-value=5.3  Score=31.63  Aligned_cols=111  Identities=9%  Similarity=-0.094  Sum_probs=62.8

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEE-eCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc-
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGI-DIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gv-D~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-  158 (262)
                      .+.++|-.|++.| ++..+++   ....+|+.+ +.+++..+.+.+.+..          ...++.++.+|+.+..... 
T Consensus         7 ~~k~vlVTGas~G-IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~   75 (259)
T 3edm_A            7 TNRTIVVAGAGRD-IGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEK----------LGRSALAIKADLTNAAEVEA   75 (259)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHT----------TTSCCEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCch-HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHh----------cCCceEEEEcCCCCHHHHHH
Confidence            5678998898776 5444433   233367776 6677666665555442          1345788999987643210 


Q ss_pred             c----cCCCCCeeEEEEccccccc-----CCCHHHHH-----------HHHHHHHhccCCCcEEEEE
Q 024797          159 V----LADDAPFDICSCQFAMHYS-----WSTEARAR-----------RALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ~----~~~~~~fD~V~~~~~l~~~-----~~~~~~~~-----------~~l~~~~~~L~~gG~li~~  205 (262)
                      .    ...-+..|+++.+......     -.+.++..           .+.+.+...++++|.++..
T Consensus        76 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~i  142 (259)
T 3edm_A           76 AISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTF  142 (259)
T ss_dssp             HHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             HHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            0    0012578999987643211     01233322           3345566666667877654

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=81.08  E-value=1.5  Score=36.59  Aligned_cols=94  Identities=18%  Similarity=0.138  Sum_probs=50.7

Q ss_pred             hccCCCeEEEecCCC--CcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--
Q 024797           81 YARRGDVVLDLACGK--GGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--  155 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~--G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--  155 (262)
                      ...++++||-.|++.  |..+..+++.. ...|++++ +++-.+.++  ..   .           ..++..+ .++.  
T Consensus       139 ~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~--~g---a-----------~~~~~~~-~~~~~~  200 (349)
T 4a27_A          139 NLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK--DS---V-----------THLFDRN-ADYVQE  200 (349)
T ss_dssp             CCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG--GG---S-----------SEEEETT-SCHHHH
T ss_pred             CCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH--cC---C-----------cEEEcCC-ccHHHH
Confidence            356889999999843  55555565543 45788888 555555554  21   0           1112211 1110  


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ....  ..+.+|+|+-.-.-.           .+....+.|+++|++++.
T Consensus       201 ~~~~--~~~g~Dvv~d~~g~~-----------~~~~~~~~l~~~G~~v~~  237 (349)
T 4a27_A          201 VKRI--SAEGVDIVLDCLCGD-----------NTGKGLSLLKPLGTYILY  237 (349)
T ss_dssp             HHHH--CTTCEEEEEEECC------------------CTTEEEEEEEEEE
T ss_pred             HHHh--cCCCceEEEECCCch-----------hHHHHHHHhhcCCEEEEE
Confidence            0111  235799998543221           125678999999998764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=80.95  E-value=0.44  Score=40.65  Aligned_cols=42  Identities=21%  Similarity=0.193  Sum_probs=31.0

Q ss_pred             CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHH
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRT  125 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~  125 (262)
                      ++.+|+=+|+|. |......+.....+|+++|.++..++.+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~  225 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS  225 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            678999999985 544444444333379999999988888766

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=80.93  E-value=8.2  Score=31.07  Aligned_cols=104  Identities=14%  Similarity=0.098  Sum_probs=55.1

Q ss_pred             CeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCcccccccc-CCC--------CCeEEEeCcccccc
Q 024797           86 DVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK-KFS--------FPARLICGDCYEVH  155 (262)
Q Consensus        86 ~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~-~~~--------~~v~~~~~d~~~~~  155 (262)
                      .+|.=||+|. |.-+...+....-.|+++|.+++.++.+.+.+........... ...        .++.. ..|..+. 
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~-   82 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQA-   82 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHH-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHH-
Confidence            4688888875 3222222222333799999999998888765321000000000 000        01111 2222111 


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                             -...|+|+..-.     ++.+....++.++...++++..++
T Consensus        83 -------~~~aDlVi~av~-----~~~~~~~~v~~~l~~~~~~~~il~  118 (283)
T 4e12_A           83 -------VKDADLVIEAVP-----ESLDLKRDIYTKLGELAPAKTIFA  118 (283)
T ss_dssp             -------TTTCSEEEECCC-----SCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred             -------hccCCEEEEecc-----CcHHHHHHHHHHHHhhCCCCcEEE
Confidence                   135799885432     234567788899999998877654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=80.58  E-value=19  Score=28.39  Aligned_cols=82  Identities=11%  Similarity=-0.048  Sum_probs=50.8

Q ss_pred             CeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           86 DVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .+||=.||  |.++..+++   .....|++++-++........                ..++++.+|+.++.       
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~----------------~~~~~~~~D~~d~~-------   60 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA----------------SGAEPLLWPGEEPS-------   60 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH----------------TTEEEEESSSSCCC-------
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh----------------CCCeEEEecccccc-------
Confidence            57999995  666655544   233379999988865544332                13888999988744       


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHh
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSA  194 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~  194 (262)
                      -..+|+|+........  .......+++.+.+
T Consensus        61 ~~~~d~vi~~a~~~~~--~~~~~~~l~~a~~~   90 (286)
T 3ius_A           61 LDGVTHLLISTAPDSG--GDPVLAALGDQIAA   90 (286)
T ss_dssp             CTTCCEEEECCCCBTT--BCHHHHHHHHHHHH
T ss_pred             cCCCCEEEECCCcccc--ccHHHHHHHHHHHh
Confidence            2467999987765432  11223444454444

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=80.56  E-value=4.9  Score=32.06  Aligned_cols=84  Identities=11%  Similarity=0.048  Sum_probs=50.0

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCC------------hhHHHHHHHHhccCccccccccCCCCCeEEEe
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIA------------EGSIEDCRTRYNGDADHHQRRKKFSFPARLIC  148 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s------------~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~  148 (262)
                      .+.++|-.|++.| ++..+++   ....+|+.+|.+            ++.++...+....          ...++.++.
T Consensus        12 ~gk~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~   80 (278)
T 3sx2_A           12 TGKVAFITGAARG-QGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVED----------IGSRIVARQ   80 (278)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHH----------HTCCEEEEE
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHh----------cCCeEEEEe
Confidence            5678998887765 5444433   233479999987            4555544443321          134588899


Q ss_pred             Cccccccccc-cc----CCCCCeeEEEEccccccc
Q 024797          149 GDCYEVHLDK-VL----ADDAPFDICSCQFAMHYS  178 (262)
Q Consensus       149 ~d~~~~~~~~-~~----~~~~~fD~V~~~~~l~~~  178 (262)
                      +|+.+..... ..    ..-+..|+++.+..+...
T Consensus        81 ~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~  115 (278)
T 3sx2_A           81 ADVRDRESLSAALQAGLDELGRLDIVVANAGIAPM  115 (278)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCC
Confidence            9987643210 00    012578999988766543

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=80.48  E-value=4.7  Score=31.94  Aligned_cols=81  Identities=11%  Similarity=-0.027  Sum_probs=51.8

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc-c
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK-V  159 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~-~  159 (262)
                      .+.+||-.|++.| ++..+++   ....+|+.++.+++.++...+.+...          ..++.++.+|+.+..... .
T Consensus        28 ~~k~vlITGas~g-IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~v~~~   96 (262)
T 3rkr_A           28 SGQVAVVTGASRG-IGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAA----------GGEAESHACDLSHSDAIAAF   96 (262)
T ss_dssp             TTCEEEESSTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------TCEEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh----------CCceeEEEecCCCHHHHHHH
Confidence            5678998887765 5555443   23347999999988877766655421          335788899987643210 0


Q ss_pred             ----cCCCCCeeEEEEcccc
Q 024797          160 ----LADDAPFDICSCQFAM  175 (262)
Q Consensus       160 ----~~~~~~fD~V~~~~~l  175 (262)
                          ....+..|+++.+...
T Consensus        97 ~~~~~~~~g~id~lv~~Ag~  116 (262)
T 3rkr_A           97 ATGVLAAHGRCDVLVNNAGV  116 (262)
T ss_dssp             HHHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHhcCCCCEEEECCCc
Confidence                0012578999987765

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=80.39  E-value=7.5  Score=30.65  Aligned_cols=78  Identities=13%  Similarity=0.017  Sum_probs=49.5

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD---  157 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---  157 (262)
                      .+.++|-.|++.| ++..+++   ....+|+.+|.+.+.++...+.+.             .++.++.+|+.+....   
T Consensus         7 ~~k~vlVTGas~g-IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------------~~~~~~~~D~~~~~~v~~~   72 (259)
T 4e6p_A            7 EGKSALITGSARG-IGRAFAEAYVREGATVAIADIDIERARQAAAEIG-------------PAAYAVQMDVTRQDSIDAA   72 (259)
T ss_dssp             TTCEEEEETCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-------------TTEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEECCCcH-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-------------CCceEEEeeCCCHHHHHHH
Confidence            4678898887765 5554433   233479999999887766655442             2477889998764321   


Q ss_pred             --cccCCCCCeeEEEEcccc
Q 024797          158 --KVLADDAPFDICSCQFAM  175 (262)
Q Consensus       158 --~~~~~~~~fD~V~~~~~l  175 (262)
                        .....-+..|+++.+...
T Consensus        73 ~~~~~~~~g~id~lv~~Ag~   92 (259)
T 4e6p_A           73 IAATVEHAGGLDILVNNAAL   92 (259)
T ss_dssp             HHHHHHHSSSCCEEEECCCC
T ss_pred             HHHHHHHcCCCCEEEECCCc
Confidence              000012578999988755

>2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus}

Probab=80.37  E-value=1.5  Score=35.70  Aligned_cols=45  Identities=18%  Similarity=0.285  Sum_probs=30.3

Q ss_pred             CCeeEEEEcccccccCCC-H------HHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          164 APFDICSCQFAMHYSWST-E------ARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~-~------~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +++|+|+++++-.+.--- .      .....++..+.++|+|||.+++.+..
T Consensus       205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvyg  256 (320)
T 2hwk_A          205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYG  256 (320)
T ss_dssp             CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECC
T ss_pred             CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEec
Confidence            779999998743321001 1      12233567788999999999998854

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=80.14  E-value=11  Score=29.92  Aligned_cols=80  Identities=16%  Similarity=-0.058  Sum_probs=48.4

Q ss_pred             cCCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      -.++++|--|.+.| .+...++   ....+|+.+|.+..  +.+.+.+.+          ...++.++++|+.+......
T Consensus         7 L~GKvalVTGas~G-IG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~----------~g~~~~~~~~Dv~d~~~v~~   73 (247)
T 4hp8_A            7 LEGRKALVTGANTG-LGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAK----------DGGNASALLIDFADPLAAKD   73 (247)
T ss_dssp             CTTCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHH----------TTCCEEEEECCTTSTTTTTT
T ss_pred             CCCCEEEEeCcCCH-HHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHH----------hCCcEEEEEccCCCHHHHHH
Confidence            36788888888876 5444433   23347888888753  122222221          13457888999876543222


Q ss_pred             cCCCCCeeEEEEcccc
Q 024797          160 LADDAPFDICSCQFAM  175 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l  175 (262)
                      ....+..|+++.+..+
T Consensus        74 ~~~~g~iDiLVNNAGi   89 (247)
T 4hp8_A           74 SFTDAGFDILVNNAGI   89 (247)
T ss_dssp             SSTTTCCCEEEECCCC
T ss_pred             HHHhCCCCEEEECCCC
Confidence            2356789999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	1e-32
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	2e-11
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	3e-11
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	2e-10
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	1e-08
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	5e-08
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	7e-08
d1wzna1	251	c.66.1.43 (A:1-251) Hypothetical methyltransferase	2e-06
d1p91a_	268	c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher	2e-06
d2bzga1	229	c.66.1.36 (A:17-245) Thiopurine S-methyltransferas	2e-06
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	5e-06
d1zx0a1	229	c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe	9e-06
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	3e-05
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	7e-05
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	8e-05
d1af7a2	193	c.66.1.8 (A:92-284) Chemotaxis receptor methyltran	8e-05
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	4e-04
d1y8ca_	246	c.66.1.43 (A:) Putative methyltransferase CAC2371	6e-04
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	7e-04
d1ve3a1	226	c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A	7e-04
d2i6ga1	198	c.66.1.44 (A:1-198) Putative methyltransferase Teh	7e-04
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	8e-04
d2gh1a1	281	c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac	8e-04
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	0.001
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	0.001
d2as0a2	324	c.66.1.51 (A:73-396) Hypothetical protein PH1915,	0.002
d1m6ya2	192	c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf	0.002
d1im8a_	225	c.66.1.14 (A:) Hypothetical protein HI0319 (YecO)	0.004

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score =  117 bits (294), Expect = 1e-32
 Identities = 73/197 (37%), Positives = 104/197 (52%), Gaps = 20/197 (10%)

Query: 61  SPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSI 120
           S  I+++  NN+IK+ L++LY +RGD VLDL CGKGGDL+K+++A IG Y G+DIAE SI
Sbjct: 1   SKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSI 60

Query: 121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS 180
            D R R            K  F       D Y  H+D        FD+ S QF+ HY++S
Sbjct: 61  NDARVRAR--------NMKRRFKVFFRAQDSYGRHMD----LGKEFDVISSQFSFHYAFS 108

Query: 181 TEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEFADK 240
           T      A  N++  LRPGG FI T+P  +VI+++ ++     + N  Y I       +K
Sbjct: 109 TSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGR---MSNDFYKI-----ELEK 160

Query: 241 KFKSSRPFGIQYKFHLE 257
                     +Y+F L 
Sbjct: 161 MEDVPMESVREYRFTLL 177

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.7 bits (146), Expect = 2e-11
 Identities = 41/232 (17%), Positives = 82/232 (35%), Gaps = 16/232 (6%)

Query: 32  EDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDL 91
              S  V A  + D Y+      + +          +   +   +L  L       VLD+
Sbjct: 6   RTRSLGVAAEGIPDQYADGEAARVWQLYIGD--TRSRTAEYKAWLLGLLRQHGCHRVLDV 63

Query: 92  ACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD 150
           ACG G D I     + G+ V  +D ++  ++              RRK+ +F   +I   
Sbjct: 64  ACGTGVDSIML--VEEGFSVTSVDASDKMLKYALKER------WNRRKEPAFDKWVIEEA 115

Query: 151 CYEVHLDKVLADDAPFDICSCQFAMHY---SWSTEARARRALANVSALLRPGGTFIGTMP 207
            +      V A D    +     +  +   S   ++  R AL N+++++RPGG  +    
Sbjct: 116 NWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175

Query: 208 DANVIIKKLREVEGLAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVP 259
           + + I+       G  I          +        +++   +   + ++VP
Sbjct: 176 NYDYILSTGCAPPGKNI--YYKSDLTKDITTSVLTVNNKAHMVTLDYTVQVP 225

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 3e-11
 Identities = 30/179 (16%), Positives = 51/179 (28%), Gaps = 26/179 (14%)

Query: 45  DHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK 104
             Y         E E     +L+ L+             +GD ++D+  G     +    
Sbjct: 18  ATYYSFDGSPSPEAEMLKF-NLECLHKTFGPGG-----LQGDTLIDIGSGPTIYQVLAAC 71

Query: 105 AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC------------- 151
                    D  + + E+       +   +       F   L                  
Sbjct: 72  DSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAV 131

Query: 152 -----YEVHLDKVLA--DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
                 +VHL   LA       D      AM  +  +    R AL N+++LL+PGG  +
Sbjct: 132 KRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLV 190

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 56.6 bits (135), Expect = 2e-10
 Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 10/142 (7%)

Query: 65  HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCR 124
           H  ++N  ++     L    G  VL   CGK  D+  W   +  + VG +++E ++E   
Sbjct: 1   HQSEVNKDLQQYWSSLNVVPGARVLVPLCGKSQDMS-WLSGQGYHVVGAELSEAAVERYF 59

Query: 125 TRYNGDADHHQRRKKFSFP---ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWST 181
           T          +     +      + CGD + +    +    A +D  +           
Sbjct: 60  TERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMR-- 117

Query: 182 EARARRALANVSALLRPGGTFI 203
                R + ++ AL+    + +
Sbjct: 118 ----ERYVQHLEALMPQACSGL 135

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 1e-08
 Identities = 23/165 (13%), Positives = 41/165 (24%), Gaps = 25/165 (15%)

Query: 68  KLNNWIKSVLVQLYA---RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCR 124
            +  W    L Q +A     G  ++D+  G     +    +        D  E + ++  
Sbjct: 35  GVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELG 94

Query: 125 TRYNGDADHHQRRKKFSFPARL----------------------ICGDCYEVHLDKVLAD 162
                +               +                               L      
Sbjct: 95  RWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPA 154

Query: 163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207
             P D     F +       A  +RAL +++ LLRPGG  +    
Sbjct: 155 PLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 5e-08
 Identities = 16/162 (9%), Positives = 41/162 (25%), Gaps = 21/162 (12%)

Query: 69  LNNWIKSVLVQLYARRGDV-----VLDLACGKGGDLIKWDKAKI-------GYYVGIDIA 116
           +  ++   L  +  R GD      +L +  G G   ++                  ++ +
Sbjct: 20  MQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPS 79

Query: 117 EGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH 176
              I   +      ++    +  +                     +   +D       ++
Sbjct: 80  AEQIAKYKELVAKISNLENVKFAWHK-----ETSSEYQSRMLEKKELQKWDFIHMIQMLY 134

Query: 177 YSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE 218
           Y     A     L    +LL      +  +   +    KL +
Sbjct: 135 YVKDIPA----TLKFFHSLLGTNAKMLIIVVSGSSGWDKLWK 172

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.5 bits (120), Expect = 7e-08
 Identities = 26/193 (13%), Positives = 67/193 (34%), Gaps = 13/193 (6%)

Query: 13  EGPPAQRFKQNPEGDSHFLEDESTKVFARKVADHYSRRTNQTLEEREA-SPIIHLKKLNN 71
                   +   +    F+ D    V+ R +    ++     L+  +A S  ++ + L N
Sbjct: 149 RQRIIDHLETIDKIPRSFIHDFLHIVYTRSIHPQANK-----LKHYKAFSNYVYGELLPN 203

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKW-DKAKIGYYVGIDIAEGSIEDCRTRYNGD 130
           ++  V  Q   ++GD  +DL  G G  +++   +       G +I + + +    +Y   
Sbjct: 204 FLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYE-- 261

Query: 131 ADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALA 190
               + +K+       +    + +    V  +     I  C   +  ++  +    + + 
Sbjct: 262 ----ELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFDEDLNKKVE 317

Query: 191 NVSALLRPGGTFI 203
            +    + G   I
Sbjct: 318 KILQTAKVGCKII 330

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 45.5 bits (106), Expect = 2e-06
 Identities = 35/196 (17%), Positives = 65/196 (33%), Gaps = 26/196 (13%)

Query: 42  KVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIK 101
            +A++Y     + +E  +A          ++++ +  +   R    VLDLACG G   ++
Sbjct: 7   LLAEYYDTIYRRRIERVKAE--------IDFVEEIFKEDAKREVRRVLDLACGTGIPTLE 58

Query: 102 WDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA 161
             + +    VG+D+ E  +   R +        +  +                       
Sbjct: 59  LAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKN------------- 104

Query: 162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEG 221
               FD  +  F+    +  E   R+  + V+  L+PGG FI   P      +    V  
Sbjct: 105 ---EFDAVTMFFSTIM-YFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVVWN 160

Query: 222 LAIGNSVYWIRLDEEF 237
              G     I    E 
Sbjct: 161 EQKGEEKLVIMDWREV 176

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 31/147 (21%)

Query: 65  HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKW-DKAKIGYYVGIDIAEGSIEDC 123
           H + L + I + L +    +   VLD+ CG+G     + D        G+D+++ +I+  
Sbjct: 65  HYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAA 124

Query: 124 RTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEA 183
             RY           +  F                    D   D     +A         
Sbjct: 125 AKRYPQVTFCVASSHRLPFS-------------------DTSMDAIIRIYAPC------- 158

Query: 184 RARRALANVSALLRPGGTFIGTMPDAN 210
                   ++ +++PGG  I   P   
Sbjct: 159 ----KAEELARVVKPGGWVITATPGPR 181

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 2e-06
 Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 6/146 (4%)

Query: 65  HLKKLNNWIKSVLVQLYA-RRGDVVLDLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIED 122
           H ++ +  +K  L      + G  V    CGK  ++  +  A  G+ V G++I+E  I++
Sbjct: 25  HQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWF--ADRGHSVVGVEISELGIQE 82

Query: 123 CRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW--S 180
             T  N         +               ++   +                  +    
Sbjct: 83  FFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAI 142

Query: 181 TEARARRALANVSALLRPGGTFIGTM 206
                +     + +LL     ++  +
Sbjct: 143 NPGDRKCYADTMFSLLGKKFQYLLCV 168

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 5e-06
 Identities = 25/179 (13%), Positives = 55/179 (30%), Gaps = 14/179 (7%)

Query: 30  FLEDESTKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVL 89
            L     +V+   V D               SP ++ +   + +  ++ ++     D+ +
Sbjct: 102 LLRHILQQVYNHSVTDPEKLN-----NYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFV 156

Query: 90  DLACGKGGDLIKWDKAKIGYYV-GIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC 148
           DL  G G  +++   A    +  G++ A+   +   T         +   K      L  
Sbjct: 157 DLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER 216

Query: 149 GDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP 207
           GD       + +A+     +                    L    A ++ GG  + + P
Sbjct: 217 GDFLSEEWRERIAN---TSVIFVNNFAFGP-----EVDHQLKERFANMKEGGRIVSSKP 267

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 9e-06
 Identities = 18/128 (14%), Positives = 33/128 (25%), Gaps = 12/128 (9%)

Query: 76  VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQ 135
            L    + +G  VL++  G      K  +A I  +  I+  +G  +  R      A    
Sbjct: 45  ALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDW----APRQT 100

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
            +                              I    + +        +      +   L
Sbjct: 101 HKVIPLKGLWEDVAPTLPDGHFD--------GILYDTYPLSEETWHTHQFNFIKNHAFRL 152

Query: 196 LRPGGTFI 203
           L+PGG   
Sbjct: 153 LKPGGVLT 160

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 3e-05
 Identities = 26/160 (16%), Positives = 47/160 (29%), Gaps = 16/160 (10%)

Query: 76  VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYN--GDA 131
           +L  +    GD VL+   G GG  +   KA    G  +  ++ +   +  +  Y    D+
Sbjct: 90  ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 149

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
                 +++      I  D      D        FD                     L  
Sbjct: 150 WKLSHVEEWPDNVDFIHKDISGATED---IKSLTFDAV---------ALDMLNPHVTLPV 197

Query: 192 VSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWI 231
               L+ GG     + +   +I+ L  +    +  S   I
Sbjct: 198 FYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCEKI 237

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 40.2 bits (93), Expect = 7e-05
 Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 14/116 (12%)

Query: 76  VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQ 135
           ++      + DV +D+ CG GG +      ++     ID    +I             + 
Sbjct: 25  IMCLAEPGKNDVAVDVGCGTGG-VTLELAGRVRRVYAIDRNPEAISTTE--------MNL 75

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
           +R        L+ GD  E      L      DI     +           +  L  
Sbjct: 76  QRHGLGDNVTLMEGDAPE-----ALCKIPDIDIAVVGGSGGELQEILRIIKDKLKP 126

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 40.4 bits (93), Expect = 8e-05
 Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 20/128 (15%)

Query: 77  LVQLYA-RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQ 135
           L+Q+ A +  + VLD+A G GG +       +   V  D+ E  ++  R    G+     
Sbjct: 7   LMQIAALKGNEEVLDVATG-GGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQV 65

Query: 136 RRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSAL 195
              +          + +                         +          ++    +
Sbjct: 66  EYVQGDAEQMPFTDERF------------------HIVTCRIAAHHFPNPASFVSEAYRV 107

Query: 196 LRPGGTFI 203
           L+ GG  +
Sbjct: 108 LKKGGQLL 115

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 193

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 40.2 bits (93), Expect = 8e-05
 Identities = 22/109 (20%), Positives = 35/109 (32%), Gaps = 3/109 (2%)

Query: 98  DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD 157
           D    +KA+ G Y   ++   S +  +  +      H+   +                L+
Sbjct: 65  DTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLE 124

Query: 158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT-FIGT 205
           K      PFD   C+  M Y    +      L     LL+P G  F G 
Sbjct: 125 KQYNVPGPFDAIFCRNVMIY--FDKTTQEDILRRFVPLLKPDGLLFAGH 171

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 26/169 (15%), Positives = 60/169 (35%), Gaps = 22/169 (13%)

Query: 70  NNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG 129
           ++ +  ++     R    VLD+  G G   + +    +   +G+D  +            
Sbjct: 2   HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSP-YVQECIGVDATK------------ 48

Query: 130 DADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRAL 189
             +  +    F+    +      +   + +   D  FDI +C++A H+           +
Sbjct: 49  --EMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKA----V 102

Query: 190 ANVSALLRPGGTFI---GTMPDANVIIKKLREVEGLAIGNSVYWIRLDE 235
             V+ +L+  G F+      P+  V+ + +  +  L   + V    L E
Sbjct: 103 REVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSHVRESSLSE 151

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 25/156 (16%), Positives = 51/156 (32%), Gaps = 17/156 (10%)

Query: 77  LVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQR 136
                    D  LDLACG  G+L +    K      +D+++  + +   ++       + 
Sbjct: 30  KCVENNLVFDDYLDLACG-TGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRL 88

Query: 137 RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALL 196
                      C D   ++       +  FD+ +C              ++    VS  L
Sbjct: 89  ----------ACQDISNLN------INRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHL 132

Query: 197 RPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIR 232
           + GG FI  +     + + L   +     + V++  
Sbjct: 133 KEGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYW 168

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 7e-04
 Identities = 29/120 (24%), Positives = 39/120 (32%), Gaps = 15/120 (12%)

Query: 84  RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP 143
           +  VVLD+ CG G   +   KA     +G+D +E   +         A    R  K    
Sbjct: 35  KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ---------AMDIIRLNKLEDT 85

Query: 144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
             LI G   EVHL                  M Y    E+     L   +  L  GG+  
Sbjct: 86  ITLIKGKIEEVHLPV------EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.4 bits (85), Expect = 7e-04
 Identities = 34/215 (15%), Positives = 63/215 (29%), Gaps = 26/215 (12%)

Query: 45  DHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK 104
             Y R      +         ++ L   +       Y ++   VLDLACG GG       
Sbjct: 3   KEYYRVFPTYTDINSQEYRSRIETLEPLLMK-----YMKKRGKVLDLACGVGGFSFLL-- 55

Query: 105 AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA 164
                                     ++   R+ +    +R    +       K+  +D 
Sbjct: 56  --------------EDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDK 101

Query: 165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAI 224
            FD      ++ +    E    +    V  +L+P G FI    D   ++ +L+E     +
Sbjct: 102 TFDYVIFIDSIVHFEPLELN--QVFKEVRRVLKPSGKFIMYFTDLRELLPRLKES---LV 156

Query: 225 GNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVP 259
               YWI       +++         Q  F +   
Sbjct: 157 VGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFN 191

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

 Score = 37.3 bits (85), Expect = 7e-04
 Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 18/116 (15%)

Query: 88  VLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI 147
            LDL CG G + +                  +                   +    A  +
Sbjct: 34  TLDLGCGNGRNSLYL----------------AANGYDVTAWDKNPASMANLERIKAAEGL 77

Query: 148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
                ++     L  D  +D       M   +         +AN+    +PGG  +
Sbjct: 78  DNLQTDLVDLNTLTFDGEYDFILSTVVMM--FLEAQTIPGLIANMQRCTKPGGYNL 131

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 8e-04
 Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 15/132 (11%)

Query: 72  WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
           +  S+    +  +  VVLD+  G G   +   KA     +GI+ +  S            
Sbjct: 21  YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAV-------- 72

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALAN 191
               +  K      +I G   E      +              M Y    E+     L  
Sbjct: 73  -KIVKANKLDHVVTIIKGKVEE------VELPVEKVDIIISEWMGYCLFYESMLNTVLHA 125

Query: 192 VSALLRPGGTFI 203
               L P G   
Sbjct: 126 RDKWLAPDGLIF 137

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

 Score = 37.6 bits (86), Expect = 8e-04
 Identities = 18/127 (14%), Positives = 36/127 (28%), Gaps = 22/127 (17%)

Query: 84  RGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS 141
           +   ++D  CG G   +       +   Y GID  E  + + R  +       +  +  +
Sbjct: 27  KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDA 86

Query: 142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGT 201
               L       +                C   + +  + E      L  +   ++ GG 
Sbjct: 87  TEIELNDKYDIAI----------------CHAFLLHMTTPE----TMLQKMIHSVKKGGK 126

Query: 202 FIGTMPD 208
            I   P 
Sbjct: 127 IICFEPH 133

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 23/138 (16%), Positives = 41/138 (29%), Gaps = 18/138 (13%)

Query: 73  IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDAD 132
             ++   L  + G  +LDL  G G  L  W +       GID++       + R   +  
Sbjct: 22  YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAE-ELG 80

Query: 133 HHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANV 192
             +R       A     +                D+ +C  A   +             +
Sbjct: 81  VSERVHFIHNDAAGYVANE-------------KCDVAACVGATWIAGGFAGAEEL----L 123

Query: 193 SALLRPGGTFIGTMPDAN 210
           +  L+PGG  +   P   
Sbjct: 124 AQSLKPGGIMLIGEPYWR 141

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 23/158 (14%), Positives = 38/158 (24%), Gaps = 23/158 (14%)

Query: 48  SRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-- 105
                +  E R  +P  +  KL   I + L     + G  VL L    G           
Sbjct: 39  RVIKWEGEEYRIWNP--NRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVG 96

Query: 106 KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP 165
             G   GI+ +   + +         +              I GD  +    + L     
Sbjct: 97  WEGKIFGIEFSPRVLRELVPIVEERRNIV-----------PILGDATKPEEYRALVPKVD 145

Query: 166 FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI 203
                                  + N    L+ GG  +
Sbjct: 146 VIFEDVAQPTQAKI--------LIDNAEVYLKRGGYGM 175

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 14/174 (8%)

Query: 69  LNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN 128
           L+     + ++ + + GD VLD+    GG  I    A     +GID +  +IE  +    
Sbjct: 130 LDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAK---- 185

Query: 129 GDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSC-QFAMHYSWSTEARARR 187
                + +        + I G  +E   +K+      FDI      A            R
Sbjct: 186 ----ENAKLNGVEDRMKFIVGSAFEEM-EKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLR 240

Query: 188 A----LANVSALLRPGGTFIGTMPDANVIIKKLREVEGLAIGNSVYWIRLDEEF 237
           A          L++ GG  +      +V ++  +++   A   +  ++++ E +
Sbjct: 241 AYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAGKFLKMLEPY 294

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 19/162 (11%)

Query: 67  KKLNNWIKSVLVQ-----LYARRGDVVLDLACGKGGD----LIKWDKAKIGYYVGIDIAE 117
           +K +     V+V+     L      ++LD   G+GG     L      +I   +GID+  
Sbjct: 1   RKYSQRHIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRI---IGIDVDS 57

Query: 118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHY 177
             +     +    +D     K     A  +        +D +L D     + + Q     
Sbjct: 58  EVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMD---LGVSTYQLKGEN 114

Query: 178 SWSTEARARRALANVSALLRPGGTF--IGTMPDANVIIKKLR 217
                   +  L     LL PGG    I      + I+K+  
Sbjct: 115 RELEN--LKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETF 154

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 3/107 (2%)

Query: 75  SVLVQLYARRGDVVLDLACGKGGDLIKWD---KAKIGYYVGIDIAEGSIEDCRTRYNGDA 131
            +L + +      V DL C +G   +             +GID ++  +E CR       
Sbjct: 30  GMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYH 89

Query: 132 DHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS 178
                    +    +   +   V L+  L    P D  +    ++  
Sbjct: 90  SEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTKIYEG 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.95
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.9
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.88
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.88
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.88
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.87
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.87
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.87
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.85
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.85
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.85
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.84
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.84
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.82
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.81
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.81
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.8
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.79
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.79
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.78
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.77
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.76
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.75
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.75
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.73
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.72
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.71
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.7
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.69
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.69
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.69
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.69
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.68
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.67
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.67
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.66
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.66
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.64
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.64
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.63
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.62
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.61
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.61
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.61
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.6
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.58
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.57
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.56
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.51
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.49
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.46
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.45
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.44
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.44
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.42
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.41
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.36
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.36
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.35
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	99.35
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.32
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.27
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.22
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.2
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	99.18
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.18
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.16
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.13
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.1
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	99.02
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.02
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.02
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.0
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.98
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.94
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.93
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.92
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.92
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.91
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.9
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.89
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.89
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.88
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.87
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.84
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.8
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.73
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.68
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.64
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.6
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.6
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.57
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.51
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.48
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.44
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.44
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.41
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.4
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	98.38
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	98.19
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.58
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.47
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.39
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.33
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.31
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.27
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.23
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.21
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.16
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.11
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.96
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	96.93
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.92
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.92
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.89
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.84
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.83
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.78
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	96.73
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.72
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.57
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.46
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.41
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.38
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.15
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.02
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.62
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	95.37
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	95.28
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.18
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	95.03
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	95.01
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	94.95
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.92
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.85
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	94.31
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.27
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.07
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.01
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.03
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.96
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.76
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.39
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	92.09
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	91.82
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	91.63
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.81
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	90.53
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	90.5
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	90.0
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	87.98
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	87.74
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	87.45
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	86.84
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	85.89
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	85.27
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	84.36
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.22
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	83.7
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	82.47

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.95  E-value=6.7e-27  Score=190.51  Aligned_cols=178  Identities=40%  Similarity=0.673  Sum_probs=146.1

Q ss_pred             ccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC
Q 024797           62 PIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS  141 (262)
Q Consensus        62 ~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  141 (262)
                      ++..++.+++|++..|......++.+|||+|||+|.++..+++.+.+.|+|+|+|+.|++.|+++....        +..
T Consensus         2 ~~~~~r~~~N~vK~~lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~--------~~~   73 (252)
T d1ri5a_           2 KTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM--------KRR   73 (252)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS--------CCS
T ss_pred             CccHHHHHHHHHHHHHHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhc--------CCC
Confidence            345688999999999888888899999999999999999998877778999999999999999987632        224


Q ss_pred             CCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhhhcC
Q 024797          142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLREVEG  221 (262)
Q Consensus       142 ~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~  221 (262)
                      .++.+.++|+...++.    ..++||+|+|.+++||++.+.++...++.++.++|+|||++++++++.+.+...+...  
T Consensus        74 ~~v~f~~~D~~~~~~~----~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~~~~~--  147 (252)
T d1ri5a_          74 FKVFFRAQDSYGRHMD----LGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQG--  147 (252)
T ss_dssp             SEEEEEESCTTTSCCC----CSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHT--
T ss_pred             cceEEEEcchhhhccc----ccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHHHHhc--
Confidence            4689999999766542    4678999999999999988899999999999999999999999999998887776642  


Q ss_pred             CccccceEEEEcCchhhhccCCCCCCcceeEEEEecCC
Q 024797          222 LAIGNSVYWIRLDEEFADKKFKSSRPFGIQYKFHLEVP  259 (262)
Q Consensus       222 ~~~~~~~~~~~f~~~~~~~~~~~~~~~g~~y~f~l~~~  259 (262)
                       .+++..|...+....     ......+..|.|.+.+.
T Consensus       148 -~~~~~~~~~~~~~~~-----~~~~~~~~~y~~~~~~~  179 (252)
T d1ri5a_         148 -RMSNDFYKIELEKME-----DVPMESVREYRFTLLDS  179 (252)
T ss_dssp             -CCBCSSEEEECCCCS-----SCCTTTCCEEEEEETTS
T ss_pred             -ccCCceEEEeccccc-----CCcCcCceEEEEEcccc
Confidence             356777888776543     11223667888887764

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=3.9e-23  Score=166.87  Aligned_cols=144  Identities=18%  Similarity=0.229  Sum_probs=111.4

Q ss_pred             chhHHHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEe
Q 024797           35 STKVFARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGID  114 (262)
Q Consensus        35 ~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD  114 (262)
                      .+.++|+.+++.|+... ....         ......++..++... ..++.+|||+|||+|.++..+++.+ .+|+|+|
T Consensus         4 ~~~~~yd~~a~~Yd~~~-~~~~---------~~~~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~giD   71 (246)
T d2avna1           4 RSWEFYDRIARAYDSMY-ETPK---------WKLYHRLIGSFLEEY-LKNPCRVLDLGGGTGKWSLFLQERG-FEVVLVD   71 (246)
T ss_dssp             CHHHHHHHHHHHHGGGG-CSHH---------HHHHHHHHHHHHHHH-CCSCCEEEEETCTTCHHHHHHHTTT-CEEEEEE
T ss_pred             cHHHHHHHHHHHHHHHh-cccc---------chHHHHHHHHHHHHh-cCCCCEEEEECCCCchhcccccccc-eEEEEee
Confidence            35578999999997432 2211         133444555555444 3567899999999999999887654 4899999


Q ss_pred             CChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEc-ccccccCCCHHHHHHHHHHHH
Q 024797          115 IAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQ-FAMHYSWSTEARARRALANVS  193 (262)
Q Consensus       115 ~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~-~~l~~~~~~~~~~~~~l~~~~  193 (262)
                      +|+.|++.|+++..               ..++++|+.++++     ++++||+|++. .+++|+    +++.++++++.
T Consensus        72 ~s~~~l~~a~~~~~---------------~~~~~~~~~~l~~-----~~~~fD~ii~~~~~~~~~----~d~~~~l~~i~  127 (246)
T d2avna1          72 PSKEMLEVAREKGV---------------KNVVEAKAEDLPF-----PSGAFEAVLALGDVLSYV----ENKDKAFSEIR  127 (246)
T ss_dssp             SCHHHHHHHHHHTC---------------SCEEECCTTSCCS-----CTTCEEEEEECSSHHHHC----SCHHHHHHHHH
T ss_pred             cccccccccccccc---------------ccccccccccccc-----ccccccceeeecchhhhh----hhHHHHHHHHH
Confidence            99999999998754               3467899998887     78999999986 578887    55678999999


Q ss_pred             hccCCCcEEEEEeCChHHHHH
Q 024797          194 ALLRPGGTFIGTMPDANVIIK  214 (262)
Q Consensus       194 ~~L~~gG~li~~~~~~~~~~~  214 (262)
                      ++|+|||.+++++++...+..
T Consensus       128 r~Lk~gG~~ii~~~~~~~~~~  148 (246)
T d2avna1         128 RVLVPDGLLIATVDNFYTFLQ  148 (246)
T ss_dssp             HHEEEEEEEEEEEEBHHHHHH
T ss_pred             hhcCcCcEEEEEECCHHHHHH
Confidence            999999999999998765544

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=8.3e-23  Score=165.65  Aligned_cols=145  Identities=24%  Similarity=0.418  Sum_probs=111.3

Q ss_pred             HHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChh
Q 024797           39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG  118 (262)
Q Consensus        39 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~  118 (262)
                      +|+.+++.|+........        .......++..++......++.+|||+|||+|..+..+++.+. .|+|+|+|+.
T Consensus         4 ~~~~~a~~Yd~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~   74 (251)
T d1wzna1           4 LYTLLAEYYDTIYRRRIE--------RVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEE   74 (251)
T ss_dssp             GGTTTGGGHHHHTHHHHH--------THHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHH
T ss_pred             hhHhhHHHHHHHHHhhhh--------hHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccc
Confidence            566677777643222111        0223344566666666667788999999999999998877554 8999999999


Q ss_pred             HHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcc-cccccCCCHHHHHHHHHHHHhccC
Q 024797          119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSALLR  197 (262)
Q Consensus       119 ~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~L~  197 (262)
                      |++.|+++....          ..++++.++|+.++++      +++||+|+|.+ +++|+  +.+++.++|++++++|+
T Consensus        75 mi~~a~~~~~~~----------~~~i~~~~~d~~~l~~------~~~fD~I~~~~~~~~~~--~~~~~~~~L~~~~~~Lk  136 (251)
T d1wzna1          75 MLRVARRKAKER----------NLKIEFLQGDVLEIAF------KNEFDAVTMFFSTIMYF--DEEDLRKLFSKVAEALK  136 (251)
T ss_dssp             HHHHHHHHHHHT----------TCCCEEEESCGGGCCC------CSCEEEEEECSSGGGGS--CHHHHHHHHHHHHHHEE
T ss_pred             cccccccccccc----------cccchheehhhhhccc------ccccchHhhhhhhhhcC--ChHHHHHHHHHHHHHcC
Confidence            999999987632          3369999999999886      46899999974 66766  67788999999999999


Q ss_pred             CCcEEEEEeCChH
Q 024797          198 PGGTFIGTMPDAN  210 (262)
Q Consensus       198 ~gG~li~~~~~~~  210 (262)
                      |||++++..++..
T Consensus       137 pgG~lii~~~~~~  149 (251)
T d1wzna1         137 PGGVFITDFPCWF  149 (251)
T ss_dssp             EEEEEEEEEEC--
T ss_pred             CCcEEEEEeccch
Confidence            9999999887753

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.88  E-value=4.2e-22  Score=161.17  Aligned_cols=146  Identities=21%  Similarity=0.358  Sum_probs=109.2

Q ss_pred             HHHHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChh
Q 024797           39 FARKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEG  118 (262)
Q Consensus        39 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~  118 (262)
                      .|+.+|+.|+........         .....+++...+... ..++.+|||+|||+|+++..+++.+. +++|+|+|+.
T Consensus         2 ~y~~~A~~YD~l~~~~~~---------y~~~~~~~~~~~~~~-~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~   70 (246)
T d1y8ca_           2 CYNKFAHIYDKLIRADVD---------YKKWSDFIIEKCVEN-NLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQE   70 (246)
T ss_dssp             CHHHHHHHHHHHTTCSCC---------HHHHHHHHHHHHHTT-TCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHH
T ss_pred             CHHHHHHHHHHHhcCCCC---------HHHHHHHHHHHHHHh-CCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchh
Confidence            578889999854322111         122222333333332 23567999999999999999977554 8999999999


Q ss_pred             HHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcc-cccccCCCHHHHHHHHHHHHhccC
Q 024797          119 SIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWSTEARARRALANVSALLR  197 (262)
Q Consensus       119 ~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~~~~~~~~~l~~~~~~L~  197 (262)
                      |++.|+++....          ..+++++++|+.+++.      +++||+|+|.+ +++|+ .+.+++..++++++++|+
T Consensus        71 ml~~A~~~~~~~----------~~~v~~~~~d~~~~~~------~~~fD~i~~~~~~~~~~-~~~~~~~~~l~~~~~~Lk  133 (246)
T d1y8ca_          71 MLSEAENKFRSQ----------GLKPRLACQDISNLNI------NRKFDLITCCLDSTNYI-IDSDDLKKYFKAVSNHLK  133 (246)
T ss_dssp             HHHHHHHHHHHT----------TCCCEEECCCGGGCCC------SCCEEEEEECTTGGGGC-CSHHHHHHHHHHHHTTEE
T ss_pred             hhhhcccccccc----------Cccceeeccchhhhcc------cccccccceeeeeeecc-CCHHHHHHHHHHHHHhCC
Confidence            999999987632          3468999999988764      57899999874 56654 567899999999999999


Q ss_pred             CCcEEEEEeCChHHH
Q 024797          198 PGGTFIGTMPDANVI  212 (262)
Q Consensus       198 ~gG~li~~~~~~~~~  212 (262)
                      |||.+++.+.+...+
T Consensus       134 pgG~~i~~~~~~~~~  148 (246)
T d1y8ca_         134 EGGVFIFDINSYYKL  148 (246)
T ss_dssp             EEEEEEEEEECHHHH
T ss_pred             CCeEEEEEeCCHHHH
Confidence            999999998877654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.88  E-value=4e-22  Score=158.80  Aligned_cols=113  Identities=26%  Similarity=0.369  Sum_probs=97.8

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .+++.+|||||||+|.++..+++. ..+|+|+|+|+.|++.|+++....          ...+.++++|+.++++     
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~----------~~~~~~~~~d~~~l~~-----   98 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSR----------ESNVEFIVGDARKLSF-----   98 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHT----------TCCCEEEECCTTSCCS-----
T ss_pred             cCCCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhccc----------cccccccccccccccc-----
Confidence            467789999999999999988765 448999999999999999987632          3457889999999887     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      ++++||+|++..+++|+  +..++.++++++.++|||||.+++.+++...+
T Consensus        99 ~~~~fD~I~~~~~l~~~--~~~d~~~~l~~i~~~LkpgG~lii~~~~~~~~  147 (226)
T d1ve3a1          99 EDKTFDYVIFIDSIVHF--EPLELNQVFKEVRRVLKPSGKFIMYFTDLREL  147 (226)
T ss_dssp             CTTCEEEEEEESCGGGC--CHHHHHHHHHHHHHHEEEEEEEEEEEECHHHH
T ss_pred             cCcCceEEEEecchhhC--ChhHHHHHHHHHHHHcCcCcEEEEEEcCchhh
Confidence            78999999999999998  66788999999999999999999998876543

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.87  E-value=1.9e-22  Score=161.45  Aligned_cols=114  Identities=19%  Similarity=0.304  Sum_probs=97.7

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      .+++.....+++.+|||||||+|.++..+++.. .+|+|+|+|+.|++.|+++....+         ..++++.++|+.+
T Consensus         5 ~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~i~~A~~~~~~~~---------~~~i~~~~~d~~~   74 (231)
T d1vl5a_           5 AKLMQIAALKGNEEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNG---------HQQVEYVQGDAEQ   74 (231)
T ss_dssp             HHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTT---------CCSEEEEECCC-C
T ss_pred             HHHHHhcCCCCcCEEEEecccCcHHHHHHHHhC-CEEEEEECCHHHHhhhhhcccccc---------ccccccccccccc
Confidence            346666777889999999999999998887654 489999999999999999876432         3459999999999


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +++     ++++||+|++..+++|+    +++..+++++.++|+|||++++..
T Consensus        75 l~~-----~~~~fD~v~~~~~l~~~----~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          75 MPF-----TDERFHIVTCRIAAHHF----PNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             CCS-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccc-----ccccccccccccccccc----CCHHHHHHHHHHhcCCCcEEEEEe
Confidence            887     78999999999999999    678899999999999999998864

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=2.3e-22  Score=161.52  Aligned_cols=113  Identities=21%  Similarity=0.353  Sum_probs=97.9

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      .++.....+++.+|||+|||+|.++..+++.. .+|+|+|+|+.|++.|+++....+         ..++.++++|+.++
T Consensus         7 ~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~-~~v~gvD~S~~~l~~A~~~~~~~~---------~~~~~~~~~d~~~~   76 (234)
T d1xxla_           7 LMIKTAECRAEHRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKG---------VENVRFQQGTAESL   76 (234)
T ss_dssp             HHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHHT---------CCSEEEEECBTTBC
T ss_pred             HHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC-CeEEEEeCChhhhhhhhhhhcccc---------cccccccccccccc
Confidence            35566677899999999999999999887654 589999999999999999876322         24599999999998


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ++     ++++||+|+|..+++|+    +++..+++++.++|||||.+++..
T Consensus        77 ~~-----~~~~fD~v~~~~~l~~~----~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          77 PF-----PDDSFDIITCRYAAHHF----SDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             CS-----CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cc-----cccccceeeeeceeecc----cCHHHHHHHHHHeeCCCcEEEEEE
Confidence            87     78999999999999998    668899999999999999998864

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.5e-21  Score=153.40  Aligned_cols=108  Identities=16%  Similarity=0.168  Sum_probs=93.7

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..++.....+|+|+|+|+.|++.|++++...+         ..+++++++|+.++++     +
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~---------~~~~~f~~~d~~~~~~-----~  124 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG---------KRVRNYFCCGLQDFTP-----E  124 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG---------GGEEEEEECCGGGCCC-----C
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccc---------cccccccccccccccc-----c
Confidence            4667999999999999988876666689999999999999999887432         2347999999999876     6


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +++||+|++..+++|+  +.++..+++++++++|+|||.+++..
T Consensus       125 ~~~fD~I~~~~~l~h~--~~~~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         125 PDSYDVIWIQWVIGHL--TDQHLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             SSCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccccccc--hhhhhhhHHHHHHHhcCCcceEEEEE
Confidence            7899999999999998  66677899999999999999999874

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.85  E-value=4.5e-21  Score=153.01  Aligned_cols=140  Identities=16%  Similarity=0.305  Sum_probs=104.4

Q ss_pred             HHHHHHhhhhccccHhhhhcCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc---CCCeEEEEeCCh
Q 024797           41 RKVADHYSRRTNQTLEEREASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---KIGYYVGIDIAE  117 (262)
Q Consensus        41 ~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~v~gvD~s~  117 (262)
                      +.+|+.|++...+....        ...+.+.+..++. ....++.+|||+|||+|..+..+++.   +..+|+|+|+|+
T Consensus         5 ~~~a~~fdd~i~~~iP~--------Y~~~~~~i~~~~~-~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~   75 (225)
T d1im8a_           5 ENVAEVFPDMIQRSVPG--------YSNIITAIGMLAE-RFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQ   75 (225)
T ss_dssp             HHHHHHHHHHHHHHSTT--------HHHHHHHHHHHHH-HHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCH
T ss_pred             chHHHHHHHHHHhcCCC--------HHHHHHHHHHHHH-HhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCH
Confidence            46788887543332221        1222222333332 23568889999999999999888763   445899999999


Q ss_pred             hHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccC
Q 024797          118 GSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLR  197 (262)
Q Consensus       118 ~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~  197 (262)
                      .|++.|+++....        +...++.+..+|+.+++       .+.+|+|++..+++|+  +.+++.+++++++++|+
T Consensus        76 ~ml~~A~~~~~~~--------~~~~~~~~~~~d~~~~~-------~~~~d~i~~~~~l~~~--~~~d~~~~l~~i~~~Lk  138 (225)
T d1im8a_          76 PMVERCRQHIAAY--------HSEIPVEILCNDIRHVE-------IKNASMVILNFTLQFL--PPEDRIALLTKIYEGLN  138 (225)
T ss_dssp             HHHHHHHHHHHTS--------CCSSCEEEECSCTTTCC-------CCSEEEEEEESCGGGS--CGGGHHHHHHHHHHHEE
T ss_pred             HHHHHHHHHhHhh--------cccchhhhccchhhccc-------cccceeeEEeeecccc--ChhhHHHHHHHHHHhCC
Confidence            9999999987632        23456788888887664       4689999999999988  67788999999999999


Q ss_pred             CCcEEEEEe
Q 024797          198 PGGTFIGTM  206 (262)
Q Consensus       198 ~gG~li~~~  206 (262)
                      |||.+++..
T Consensus       139 pgG~li~~~  147 (225)
T d1im8a_         139 PNGVLVLSE  147 (225)
T ss_dssp             EEEEEEEEE
T ss_pred             CCceeeccc
Confidence            999999874

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.85  E-value=1.6e-21  Score=160.88  Aligned_cols=111  Identities=20%  Similarity=0.149  Sum_probs=96.0

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..+.++.+|||||||+|.++..+++.....|+|+|+|+.|++.|+++...        .++..+++++++|+.++++   
T Consensus        63 ~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~--------~gl~~~v~~~~~d~~~l~~---  131 (282)
T d2o57a1          63 GVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQ--------AGLADNITVKYGSFLEIPC---  131 (282)
T ss_dssp             TCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH--------HTCTTTEEEEECCTTSCSS---
T ss_pred             cCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccc--------ccccccccccccccccccc---
Confidence            34568899999999999999888765445899999999999999998763        2345679999999999987   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                        ++++||+|++..+++|+    +++..+++++.++|||||.+++..+
T Consensus       132 --~~~sfD~V~~~~~l~h~----~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         132 --EDNSYDFIWSQDAFLHS----PDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             --CTTCEEEEEEESCGGGC----SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --cccccchhhccchhhhc----cCHHHHHHHHHHhcCCCcEEEEEEe
Confidence              78999999999999998    5678899999999999999998753

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=4.4e-21  Score=151.12  Aligned_cols=100  Identities=20%  Similarity=0.305  Sum_probs=87.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||||||+|.++..+.     +++|+|+|+.|++.|+++                ++.++++|+.++++     +
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~----------------~~~~~~~d~~~l~~-----~   88 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR----------------GVFVLKGTAENLPL-----K   88 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT----------------TCEEEECBTTBCCS-----C
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc----------------cccccccccccccc-----c
Confidence            456789999999999887762     468999999999999874                27899999999887     6


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      +++||+|++..+++|+    +++..++++++++|+|||.+++.+++.+.+
T Consensus        89 ~~~fD~I~~~~~l~h~----~d~~~~l~~~~~~L~pgG~l~i~~~~~~~~  134 (208)
T d1vlma_          89 DESFDFALMVTTICFV----DDPERALKEAYRILKKGGYLIVGIVDRESF  134 (208)
T ss_dssp             TTCEEEEEEESCGGGS----SCHHHHHHHHHHHEEEEEEEEEEEECSSSH
T ss_pred             cccccccccccccccc----cccccchhhhhhcCCCCceEEEEecCCcch
Confidence            8999999999999998    567899999999999999999999876543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.2e-21  Score=155.83  Aligned_cols=117  Identities=21%  Similarity=0.254  Sum_probs=99.0

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +..+...+...++.+|||||||+|..+..+++.....|+|+|+|+.|++.|+++....        ++..+++++++|+.
T Consensus        22 ~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~--------gl~~~v~~~~~d~~   93 (245)
T d1nkva_          22 YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL--------GVSERVHFIHNDAA   93 (245)
T ss_dssp             HHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHT--------TCTTTEEEEESCCT
T ss_pred             HHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHh--------hccccchhhhhHHh
Confidence            3445556667899999999999999988887755568999999999999999987643        33457999999998


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ++.      ++++||+|++..+++|+    .++..++++++++|||||++++..+
T Consensus        94 ~~~------~~~~fD~v~~~~~~~~~----~d~~~~l~~~~r~LkPGG~l~i~~~  138 (245)
T d1nkva_          94 GYV------ANEKCDVAACVGATWIA----GGFAGAEELLAQSLKPGGIMLIGEP  138 (245)
T ss_dssp             TCC------CSSCEEEEEEESCGGGT----SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred             hcc------ccCceeEEEEEehhhcc----CCHHHHHHHHHHHcCcCcEEEEEec
Confidence            863      57899999999999998    5678999999999999999999764

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.84  E-value=1.5e-20  Score=152.61  Aligned_cols=118  Identities=14%  Similarity=0.143  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      .+.+.++..+...++.+|||+|||+|+++..++......|+++|+|+.|++.|+++...           ..++++.++|
T Consensus        80 ~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~-----------~~~~~~~~~d  148 (254)
T d1xtpa_          80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG-----------MPVGKFILAS  148 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT-----------SSEEEEEESC
T ss_pred             HHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc-----------cccceeEEcc
Confidence            34556666666667889999999999999988765566899999999999999988752           2347899999


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +.++++     ++++||+|++.++++|+  +.++...+|++++++|+|||.+++..
T Consensus       149 ~~~~~~-----~~~~fD~I~~~~vl~hl--~d~d~~~~l~~~~~~LkpgG~iii~e  197 (254)
T d1xtpa_         149 METATL-----PPNTYDLIVIQWTAIYL--TDADFVKFFKHCQQALTPNGYIFFKE  197 (254)
T ss_dssp             GGGCCC-----CSSCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccc-----CCCccceEEeecccccc--chhhhHHHHHHHHHhcCCCcEEEEEe
Confidence            998876     67899999999999999  66778899999999999999999864

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.82  E-value=2.3e-20  Score=148.85  Aligned_cols=108  Identities=17%  Similarity=0.190  Sum_probs=92.0

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..+++.. .+|+|+|+|+++++.|+++..             .++.++++|+.+++.      
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g-~~v~giD~s~~~i~~a~~~~~-------------~~~~~~~~~~~~~~~------   78 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHF-NDITCVEASEEAISHAQGRLK-------------DGITYIHSRFEDAQL------   78 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTC-SCEEEEESCHHHHHHHHHHSC-------------SCEEEEESCGGGCCC------
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcC-CeEEEEeCcHHHhhhhhcccc-------------ccccccccccccccc------
Confidence            356789999999999998886544 479999999999999998754             258899999888764      


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHH-hccCCCcEEEEEeCChHHHHH
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVS-ALLRPGGTFIGTMPDANVIIK  214 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~-~~L~~gG~li~~~~~~~~~~~  214 (262)
                      +++||+|++..+++|+    +++..++.++. ++|+|||.+++++||...+..
T Consensus        79 ~~~fD~I~~~~vleh~----~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~  127 (225)
T d2p7ia1          79 PRRYDNIVLTHVLEHI----DDPVALLKRINDDWLAEGGRLFLVCPNANAVSR  127 (225)
T ss_dssp             SSCEEEEEEESCGGGC----SSHHHHHHHHHHTTEEEEEEEEEEEECTTCHHH
T ss_pred             ccccccccccceeEec----CCHHHHHHHHHHHhcCCCceEEEEeCCcccHHH
Confidence            6889999999999999    67788999998 789999999999998765543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.81  E-value=5.8e-20  Score=143.12  Aligned_cols=129  Identities=17%  Similarity=0.151  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccc---cCCCCCeEEE
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR---KKFSFPARLI  147 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~---~~~~~~v~~~  147 (262)
                      .+++..+..+.+.++.+|||+|||+|+.+..+++.+. .|+|+|+|+.|++.|+++...........   ......+.++
T Consensus         7 ~~~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (201)
T d1pjza_           7 KDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW   85 (201)
T ss_dssp             HHHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred             HHHHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence            4455566677788999999999999999999987655 89999999999999999886433211000   0012446788


Q ss_pred             eCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       148 ~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ++|+.+++..    ....||+|++..+++|+  +.++...++++++++|||||.+++..
T Consensus        86 ~~d~~~l~~~----~~~~~D~i~~~~~l~~l--~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          86 CGDFFALTAR----DIGHCAAFYDRAAMIAL--PADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             EECCSSSTHH----HHHSEEEEEEESCGGGS--CHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cccccccccc----cccceeEEEEEeeeEec--chhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            8888776542    34689999999999998  77888999999999999999987764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.81  E-value=1.4e-19  Score=141.39  Aligned_cols=107  Identities=16%  Similarity=0.172  Sum_probs=90.9

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|..+..+++.+. +|+|+|+|+.|++.++++....+.         .++.+.+.|+..+..      
T Consensus        29 ~~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~---------~~~~~~~~d~~~~~~------   92 (198)
T d2i6ga1          29 VAPGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGL---------DNLQTDLVDLNTLTF------   92 (198)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC---------TTEEEEECCTTTCCC------
T ss_pred             CCCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccc---------cchhhhheecccccc------
Confidence            3556999999999999999887554 899999999999999988764322         348899999988764      


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +++||+|++..+++|+  +.+...++++++.++|+|||++++.+.
T Consensus        93 ~~~fD~I~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1          93 DGEYDFILSTVVMMFL--EAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             CCCEEEEEEESCGGGS--CTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             cccccEEEEeeeeecC--CHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            6889999999999998  666788999999999999999988653

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=2.2e-19  Score=146.76  Aligned_cols=117  Identities=20%  Similarity=0.344  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEE
Q 024797           68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARL  146 (262)
Q Consensus        68 ~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~  146 (262)
                      .+.+.+...+......++.+|||+|||+|.++..+++. +...++|+|+|+.|++.|+++..              ++.+
T Consensus        68 ~l~~~~~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~--------------~~~~  133 (268)
T d1p91a_          68 PLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYP--------------QVTF  133 (268)
T ss_dssp             HHHHHHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCT--------------TSEE
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccc--------------cccc
Confidence            33444444555555667889999999999999998775 34579999999999999998754              4899


Q ss_pred             EeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHH
Q 024797          147 ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK  214 (262)
Q Consensus       147 ~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~  214 (262)
                      .++|+.++++     ++++||+|++.++++|+           ++++|+|||||.+++.+|+.+.+.+
T Consensus       134 ~~~d~~~l~~-----~~~sfD~v~~~~~~~~~-----------~e~~rvLkpgG~l~~~~p~~~~l~e  185 (268)
T d1p91a_         134 CVASSHRLPF-----SDTSMDAIIRIYAPCKA-----------EELARVVKPGGWVITATPGPRHLME  185 (268)
T ss_dssp             EECCTTSCSB-----CTTCEEEEEEESCCCCH-----------HHHHHHEEEEEEEEEEEECTTTTHH
T ss_pred             eeeehhhccC-----CCCCEEEEeecCCHHHH-----------HHHHHHhCCCcEEEEEeeCCcchHH
Confidence            9999999988     78999999999888764           6789999999999999998866543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.79  E-value=2.6e-19  Score=147.32  Aligned_cols=108  Identities=20%  Similarity=0.323  Sum_probs=91.6

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++.+|||+|||+|.++..++..  ...+|+|+|+|+.+++.|+++....          +.+++|.++|+.++++   
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~----------~~~~~f~~~d~~~~~~---   91 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL----------PYDSEFLEGDATEIEL---   91 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS----------SSEEEEEESCTTTCCC---
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc----------cccccccccccccccc---
Confidence            356789999999999998888663  2357999999999999999987632          3458999999988775   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                         +++||+|++..+++|+    +++..+++++.++|||||.+++..|+.
T Consensus        92 ---~~~fD~v~~~~~l~~~----~d~~~~l~~~~~~LkpgG~lii~~~~~  134 (281)
T d2gh1a1          92 ---NDKYDIAICHAFLLHM----TTPETMLQKMIHSVKKGGKIICFEPHW  134 (281)
T ss_dssp             ---SSCEEEEEEESCGGGC----SSHHHHHHHHHHTEEEEEEEEEEECCH
T ss_pred             ---cCCceEEEEehhhhcC----CCHHHHHHHHHHHcCcCcEEEEEECCc
Confidence               4679999999999998    567889999999999999999987753

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-18  Score=139.37  Aligned_cols=120  Identities=18%  Similarity=0.156  Sum_probs=96.1

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCcccc--------ccccCCCCCeEEEeCcc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH--------QRRKKFSFPARLICGDC  151 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~--------~~~~~~~~~v~~~~~d~  151 (262)
                      +...++.+|||+|||+|+.+..+++.+. .|+|||+|+.+++.|+++........        ........++++.++|+
T Consensus        41 l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~  119 (229)
T d2bzga1          41 LKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSI  119 (229)
T ss_dssp             HTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCG
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcch
Confidence            3456788999999999999999987665 89999999999999998875332110        01112245789999999


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .+++..    ..+.||+|+...+++|+  ++++...+++++.++|+|||.+++.+
T Consensus       120 ~~l~~~----~~~~fd~i~~~~~l~~~--~~~~r~~~~~~~~~~LkpgG~~~l~~  168 (229)
T d2bzga1         120 FDLPRT----NIGKFDMIWDRGALVAI--NPGDRKCYADTMFSLLGKKFQYLLCV  168 (229)
T ss_dssp             GGGGGS----CCCCEEEEEESSSTTTS--CGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             hhcccc----ccCceeEEEEEEEEEec--cchhhHHHHHHHHhhcCCcceEEEEE
Confidence            887642    56899999999999998  66788999999999999999987765

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.8e-18  Score=142.99  Aligned_cols=137  Identities=18%  Similarity=0.262  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEE
Q 024797           68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI  147 (262)
Q Consensus        68 ~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~  147 (262)
                      ....|+...+   ...++.+|||+|||+|.++..+++.+. .|+|+|+|+.|++.|+++....+...     ......+.
T Consensus        43 ~~~~~l~~~l---~~~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~-----~~~~~~~~  113 (292)
T d1xvaa_          43 EYKAWLLGLL---RQHGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEP-----AFDKWVIE  113 (292)
T ss_dssp             HHHHHHHHHH---HHTTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSH-----HHHTCEEE
T ss_pred             HHHHHHHHHh---hhcCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhccccc-----ccceeeee
Confidence            3445555444   334677999999999999999987654 79999999999999998876322110     00123344


Q ss_pred             eCcccccccccccCCCCCeeEEEEcc-cccccCC---CHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHH
Q 024797          148 CGDCYEVHLDKVLADDAPFDICSCQF-AMHYSWS---TEARARRALANVSALLRPGGTFIGTMPDANVIIKK  215 (262)
Q Consensus       148 ~~d~~~~~~~~~~~~~~~fD~V~~~~-~l~~~~~---~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~  215 (262)
                      .+++..++..  ....++||+|+|.+ +++|+..   ..++...+|++++++|||||.|++++.+.+.++..
T Consensus       114 ~~~~~~~~~~--~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~  183 (292)
T d1xvaa_         114 EANWLTLDKD--VPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRNYDYILST  183 (292)
T ss_dssp             ECCGGGHHHH--SCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH
T ss_pred             eccccccccc--cCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecCHHHHhhc
Confidence            4554332211  11457899999865 7888743   23678899999999999999999999998877554

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.77  E-value=9.4e-19  Score=143.46  Aligned_cols=115  Identities=12%  Similarity=0.146  Sum_probs=95.7

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ++.++..+.+.++.+|||||||+|.++..+++.....|+|+|+|+++++.|+++..+.        ++...+.+...|..
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~--------~l~~~~~~~~~d~~  112 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASI--------DTNRSRQVLLQGWE  112 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTS--------CCSSCEEEEESCGG
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhh--------ccccchhhhhhhhh
Confidence            4556666677899999999999999998887654458999999999999999998743        33456777777765


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ++        +++||.|++..+++|+  ..++...++++++++|||||.+++.
T Consensus       113 ~~--------~~~fD~i~si~~~eh~--~~~~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         113 DF--------AEPVDRIVSIEAFEHF--GHENYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             GC--------CCCCSEEEEESCGGGT--CGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             hh--------ccchhhhhHhhHHHHh--hhhhHHHHHHHHHhccCCCceEEEE
Confidence            43        4789999999999998  5567789999999999999999875

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.76  E-value=5.3e-18  Score=130.99  Aligned_cols=117  Identities=20%  Similarity=0.221  Sum_probs=96.6

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      ..++..+.+.++++|||+|||+|.++..++.. .++|+|+|+++.+++.|++++...        ++..+++++++|+.+
T Consensus        23 ~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~--------gl~~~v~~~~gda~~   93 (186)
T d1l3ia_          23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRH--------GLGDNVTLMEGDAPE   93 (186)
T ss_dssp             HHHHHHHCCCTTCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHT--------TCCTTEEEEESCHHH
T ss_pred             HHHHHhcCCCCCCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHc--------CCCcceEEEECchhh
Confidence            44566677889999999999999999988754 558999999999999999998743        445679999999887


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      ...     +...||+|++....++.       ..+++.+.+.|+|||++++.....+.
T Consensus        94 ~~~-----~~~~~D~v~~~~~~~~~-------~~~~~~~~~~LkpgG~lvi~~~~~e~  139 (186)
T d1l3ia_          94 ALC-----KIPDIDIAVVGGSGGEL-------QEILRIIKDKLKPGGRIIVTAILLET  139 (186)
T ss_dssp             HHT-----TSCCEEEEEESCCTTCH-------HHHHHHHHHTEEEEEEEEEEECBHHH
T ss_pred             ccc-----ccCCcCEEEEeCccccc-------hHHHHHHHHHhCcCCEEEEEeecccc
Confidence            765     56889999998876543       56899999999999999998766544

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=5.1e-18  Score=139.49  Aligned_cols=118  Identities=16%  Similarity=0.106  Sum_probs=96.4

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ++.++..+.+.+|.+|||||||.|.++..+++....+|+|+++|+++++.++++..+.        ++...+.+...|..
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~--------~l~~~v~~~~~d~~  121 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEV--------DSPRRKEVRIQGWE  121 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHS--------CCSSCEEEEECCGG
T ss_pred             HHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhh--------ccchhhhhhhhccc
Confidence            4556667778899999999999999999887654558999999999999999988743        34556788887753


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCC-----HHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWST-----EARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~-----~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .        .+++||.|++..+++|+.+.     .+....+++++.++|||||++++.+
T Consensus       122 ~--------~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         122 E--------FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             G--------CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             c--------cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            2        46899999999999998322     2567899999999999999998753

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=5.2e-18  Score=139.02  Aligned_cols=115  Identities=17%  Similarity=0.195  Sum_probs=96.6

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      ++.++..+.+.+|.+|||||||.|.++..+++....+|+|+++|+++++.|+++..+.        ++..++.+..+|..
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~--------g~~~~v~~~~~d~~  122 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS--------ENLRSKRVLLAGWE  122 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC--------CCCSCEEEEESCGG
T ss_pred             HHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhh--------hhhhhhHHHHhhhh
Confidence            3455566778899999999999999999888755569999999999999999987643        44567999999986


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ++        +++||.|++...++|+  .......+++++.++|+|||.+++.
T Consensus       123 ~~--------~~~fD~i~si~~~eh~--~~~~~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_         123 QF--------DEPVDRIVSIGAFEHF--GHERYDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             GC--------CCCCSEEEEESCGGGT--CTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             cc--------cccccceeeehhhhhc--CchhHHHHHHHHHhhcCCCCcEEEE
Confidence            64        3689999999999998  4456688999999999999999863

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.3e-18  Score=136.56  Aligned_cols=139  Identities=17%  Similarity=0.171  Sum_probs=91.9

Q ss_pred             hHHHHHHHHHHHHh---ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCcccccccc------
Q 024797           68 KLNNWIKSVLVQLY---ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRK------  138 (262)
Q Consensus        68 ~~~~~~~~~l~~~~---~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~------  138 (262)
                      ....|+...+.+..   ..++.+|||+|||+|.++..++......|+|+|+|+.|++.|++++.+.........      
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~  111 (257)
T d2a14a1          32 EMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFAC  111 (257)
T ss_dssp             HHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHH
Confidence            33445444444432   235679999999999988777655565799999999999999998764321100000      


Q ss_pred             --------------CCCCCe-EEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          139 --------------KFSFPA-RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       139 --------------~~~~~v-~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                                    .....+ .....+....... ...+.++||+|++.++++|+....++...+++++.++|||||.++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li  190 (257)
T d2a14a1         112 ELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPL-APAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLV  190 (257)
T ss_dssp             HHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTT-TTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred             HhccccchHHHHHHHHhhhhhccccccccccccc-ccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEE
Confidence                          000000 1111111111110 112578999999999999997778899999999999999999999


Q ss_pred             EEeC
Q 024797          204 GTMP  207 (262)
Q Consensus       204 ~~~~  207 (262)
                      +..+
T Consensus       191 ~~~~  194 (257)
T d2a14a1         191 TTVT  194 (257)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8754

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=4.7e-17  Score=126.41  Aligned_cols=117  Identities=17%  Similarity=0.264  Sum_probs=92.4

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ++..+...++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++...+..       ..++.+..+|+.+ .
T Consensus        44 Li~~l~~~~~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~-------~~~i~~~~~d~~~-~  114 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLD-------NYDIRVVHSDLYE-N  114 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCT-------TSCEEEEECSTTT-T
T ss_pred             HHHhCCcCCCCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCc-------cceEEEEEcchhh-h
Confidence            444555678899999999999999888654 458999999999999999987643221       2358899999876 3


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      .     ++++||+|+++..+++.   .+....+++++.++|+|||.+++.+...
T Consensus       115 ~-----~~~~fD~Ii~~~p~~~~---~~~~~~~l~~~~~~LkpgG~l~i~~~~~  160 (194)
T d1dusa_         115 V-----KDRKYNKIITNPPIRAG---KEVLHRIIEEGKELLKDNGEIWVVIQTK  160 (194)
T ss_dssp             C-----TTSCEEEEEECCCSTTC---HHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred             h-----ccCCceEEEEcccEEec---chhhhhHHHHHHHhcCcCcEEEEEEeCc
Confidence            3     57899999998887653   3446789999999999999988766543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.71  E-value=2.3e-17  Score=133.11  Aligned_cols=121  Identities=18%  Similarity=0.202  Sum_probs=98.9

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      ..++..+.+.|+.+|||+|||+|.++..+++  .+.++|+++|+++++++.|++++....      .....++.+.++|+
T Consensus        86 s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~------~~~~~nv~~~~~d~  159 (264)
T d1i9ga_          86 AQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY------GQPPDNWRLVVSDL  159 (264)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH------TSCCTTEEEECSCG
T ss_pred             HHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhc------cCCCceEEEEeccc
Confidence            3456667788999999999999999999987  467899999999999999999876311      12246799999999


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHH
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK  214 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~  214 (262)
                      .+.++     +++.||.|++.     +    +++..++.++.++|||||.+++.+|+.+.+.+
T Consensus       160 ~~~~~-----~~~~fDaV~ld-----l----p~P~~~l~~~~~~LkpGG~lv~~~P~i~Qv~~  208 (264)
T d1i9ga_         160 ADSEL-----PDGSVDRAVLD-----M----LAPWEVLDAVSRLLVAGGVLMVYVATVTQLSR  208 (264)
T ss_dssp             GGCCC-----CTTCEEEEEEE-----S----SCGGGGHHHHHHHEEEEEEEEEEESSHHHHHH
T ss_pred             ccccc-----cCCCcceEEEe-----c----CCHHHHHHHHHhccCCCCEEEEEeCccChHHH
Confidence            88776     68999999863     3    44568899999999999999999999876533

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=3e-17  Score=134.76  Aligned_cols=135  Identities=8%  Similarity=0.010  Sum_probs=91.6

Q ss_pred             hhHHHHHHHHHHHHh-----ccCCCeEEEecCCCCcchHHHHhc-----C--CCeEEEEeCChhHHHHHHHHhccCcccc
Q 024797           67 KKLNNWIKSVLVQLY-----ARRGDVVLDLACGKGGDLIKWDKA-----K--IGYYVGIDIAEGSIEDCRTRYNGDADHH  134 (262)
Q Consensus        67 ~~~~~~~~~~l~~~~-----~~~~~~vLDiGcG~G~~~~~l~~~-----~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~  134 (262)
                      ..+.+|+...+..+.     .++..+|||||||+|.++..++..     +  ...++|+|+|+.|++.|+++..+.... 
T Consensus        18 ~~~~~~~~~~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~-   96 (280)
T d1jqea_          18 QCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNL-   96 (280)
T ss_dssp             HHHHHHHHHTHHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSC-
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhcccc-
Confidence            445556655554332     123347999999999987776542     1  225899999999999999987632110 


Q ss_pred             ccccCCCCCeEEEeCcccccccc-cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          135 QRRKKFSFPARLICGDCYEVHLD-KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       135 ~~~~~~~~~v~~~~~d~~~~~~~-~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                           ......+.+.++..+... ....++++||+|++.++++|+    +++..++++++++|+|||.+++.+++...
T Consensus        97 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~----~d~~~~l~~l~~~LkpgG~l~i~~~~~~~  165 (280)
T d1jqea_          97 -----ENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYV----KDIPATLKFFHSLLGTNAKMLIIVVSGSS  165 (280)
T ss_dssp             -----TTEEEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGC----SCHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred             -----ccccccchhhhhhhhcchhcccCCCCceeEEEEccceecC----CCHHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence                 011233445444332110 011257899999999999998    66789999999999999999998876543

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.5e-17  Score=129.84  Aligned_cols=107  Identities=19%  Similarity=0.144  Sum_probs=84.7

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||||||+|..+..+++....+++|+|+|+.+++.|+++....          ..++.++..++......   .
T Consensus        51 ~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~~~~---~  117 (229)
T d1zx0a1          51 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ----------THKVIPLKGLWEDVAPT---L  117 (229)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC----------SSEEEEEESCHHHHGGG---S
T ss_pred             ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhc----------ccccccccccccccccc---c
Confidence            4678899999999999888887765568999999999999999987632          34577778876543221   1


Q ss_pred             CCCCeeEEEE-----cccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          162 DDAPFDICSC-----QFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       162 ~~~~fD~V~~-----~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ++++||.|+.     ...++|+    .+...++++++|+|||||+|++.
T Consensus       118 ~~~~fD~i~fD~~~~~~~~~~~----~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         118 PDGHFDGILYDTYPLSEETWHT----HQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             CTTCEEEEEECCCCCBGGGTTT----HHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             ccccccceeecccccccccccc----cCHHHHHHHHHHHcCCCcEEEEE
Confidence            5788999984     4456665    78899999999999999999874

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.69  E-value=1.4e-16  Score=128.80  Aligned_cols=113  Identities=19%  Similarity=0.218  Sum_probs=91.6

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ++..+...+..+|||||||+|.++..+++. +..+++++|+ +++++.++++...        .+...++.++.+|+.+.
T Consensus        72 ~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~--------~~~~~rv~~~~~D~~~~  142 (253)
T d1tw3a2          72 PAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKD--------EGLSDRVDVVEGDFFEP  142 (253)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHH--------TTCTTTEEEEECCTTSC
T ss_pred             HHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHH--------hhcccchhhccccchhh
Confidence            344444456789999999999999998874 4557999998 6799999988774        23456799999998653


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                             ...+||+|++..++||+  +.++..++|++++++|+|||.+++..
T Consensus       143 -------~~~~~D~v~~~~vlh~~--~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         143 -------LPRKADAIILSFVLLNW--PDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             -------CSSCEEEEEEESCGGGS--CHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             -------cccchhheeeccccccC--CchhhHHHHHHHHHhcCCCcEEEEEe
Confidence                   23579999999999998  77788899999999999999988864

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.3e-16  Score=128.19  Aligned_cols=124  Identities=17%  Similarity=0.172  Sum_probs=86.9

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCcccccc---------cc-----------CC-C
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQR---------RK-----------KF-S  141 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~---------~~-----------~~-~  141 (262)
                      ..+.+|||+|||+|.+....+.....+|+|+|+|+.|++.+++++........-         ..           .. .
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            357899999999998776555555668999999999999999877532110000         00           00 0


Q ss_pred             CCeEEEeCcccccc-cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          142 FPARLICGDCYEVH-LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       142 ~~v~~~~~d~~~~~-~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .......+|+.... +.....+.++||+|++.++++|++.+.++..+++++++++|||||.|++..
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~  198 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG  198 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence            01223455654322 111112457899999999999998888899999999999999999998754

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=1.6e-16  Score=123.84  Aligned_cols=117  Identities=13%  Similarity=0.191  Sum_probs=92.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .++...|||||||+|..+..+++. +...++|+|+++.++..|.++..+.+.         .|+.++++|+..+.  .. 
T Consensus        27 ~~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l---------~Nv~~~~~Da~~l~--~~-   94 (204)
T d2fcaa1          27 GNDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA---------QNVKLLNIDADTLT--DV-   94 (204)
T ss_dssp             TSCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC---------SSEEEECCCGGGHH--HH-
T ss_pred             CCCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc---------cCchhcccchhhhh--cc-
Confidence            455668999999999999999874 566799999999999999998875433         46999999998764  11 


Q ss_pred             CCCCCeeEEEEcccccccCCCHHH------HHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEAR------ARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~------~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      .+++++|.|++.+...|.  ....      ...++..++++|||||.|++.+.+....
T Consensus        95 ~~~~~~d~v~i~fp~P~~--k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~  150 (204)
T d2fcaa1          95 FEPGEVKRVYLNFSDPWP--KKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLF  150 (204)
T ss_dssp             CCTTSCCEEEEESCCCCC--SGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHH
T ss_pred             cCchhhhccccccccccc--hhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHH
Confidence            278999999998877654  1111      1479999999999999999988665543

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=1.1e-16  Score=126.06  Aligned_cols=111  Identities=16%  Similarity=0.228  Sum_probs=90.2

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      +..++..+...++++|||+|||+|..+..+++  ...+.|+++|+++++++.|++++...+         ..++.++++|
T Consensus        64 ~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~---------~~n~~~~~~d  134 (213)
T d1dl5a1          64 MALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG---------IENVIFVCGD  134 (213)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT---------CCSEEEEESC
T ss_pred             hHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc---------ccccccccCc
Confidence            45567777889999999999999999888876  356689999999999999999987433         3458889999


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +.+...     ..++||+|++..+++++  +        .++.+.|||||+|++.+.
T Consensus       135 ~~~~~~-----~~~~fD~I~~~~~~~~~--p--------~~l~~~LkpGG~lv~pv~  176 (213)
T d1dl5a1         135 GYYGVP-----EFSPYDVIFVTVGVDEV--P--------ETWFTQLKEGGRVIVPIN  176 (213)
T ss_dssp             GGGCCG-----GGCCEEEEEECSBBSCC--C--------HHHHHHEEEEEEEEEEBC
T ss_pred             hHHccc-----cccchhhhhhhccHHHh--H--------HHHHHhcCCCcEEEEEEC
Confidence            876554     46789999999999887  2        246778999999998654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.67  E-value=9.8e-17  Score=128.57  Aligned_cols=118  Identities=13%  Similarity=0.145  Sum_probs=93.3

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      ++..+...||.+|||+|||+|.++..+++  .+.++|+++|+++++++.|++++.+.        ....++++..+|+.+
T Consensus        77 Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~--------~~~~nv~~~~~Di~~  148 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF--------YDIGNVRTSRSDIAD  148 (250)
T ss_dssp             ----CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT--------SCCTTEEEECSCTTT
T ss_pred             HHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--------cCCCceEEEEeeeec
Confidence            44556678999999999999999998876  36679999999999999999998742        224579999999877


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHH
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKL  216 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~  216 (262)
                      ..      +++.||.|++..         .++..++.++.++|||||++++.+|+.+.+.+.+
T Consensus       149 ~~------~~~~fD~V~ld~---------p~p~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~  196 (250)
T d1yb2a1         149 FI------SDQMYDAVIADI---------PDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTV  196 (250)
T ss_dssp             CC------CSCCEEEEEECC---------SCGGGSHHHHHHTEEEEEEEEEEESSHHHHHHHH
T ss_pred             cc------ccceeeeeeecC---------CchHHHHHHHHHhcCCCceEEEEeCCcChHHHHH
Confidence            53      578899998642         2345789999999999999999999976554433

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.67  E-value=1.3e-16  Score=128.33  Aligned_cols=113  Identities=24%  Similarity=0.302  Sum_probs=86.5

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++....          ..++.++++|+.+. .     
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g-~~V~gvDis~~av~~A~~na~~n----------~~~~~~~~~d~~~~-~-----  180 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLG-GKALGVDIDPMVLPQAEANAKRN----------GVRPRFLEGSLEAA-L-----  180 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCGGGHHHHHHHHHHT----------TCCCEEEESCHHHH-G-----
T ss_pred             cCccCEEEEcccchhHHHHHHHhcC-CEEEEEECChHHHHHHHHHHHHc----------CCceeEEecccccc-c-----
Confidence            4688999999999999888776655 47999999999999999987632          23467889987653 2     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe---CChHHHHHHHhh
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM---PDANVIIKKLRE  218 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~---~~~~~~~~~~~~  218 (262)
                      +.++||+|+++...       .....++.++.++|||||+++++-   .+.+.+.+.+..
T Consensus       181 ~~~~fD~V~ani~~-------~~l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~  233 (254)
T d2nxca1         181 PFGPFDLLVANLYA-------ELHAALAPRYREALVPGGRALLTGILKDRAPLVREAMAG  233 (254)
T ss_dssp             GGCCEEEEEEECCH-------HHHHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred             cccccchhhhcccc-------ccHHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHH
Confidence            46899999987544       446778899999999999999863   233444444433

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.66  E-value=1.6e-16  Score=126.28  Aligned_cols=110  Identities=14%  Similarity=0.065  Sum_probs=87.6

Q ss_pred             HHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797           78 VQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (262)
Q Consensus        78 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (262)
                      ..+.+.|+.+|||+|||+|..+..++.. +.+.|+|+|+|+.|++.++++...           ..++..+.+|......
T Consensus        68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~-----------~~ni~~i~~d~~~~~~  136 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAE-----------RENIIPILGDANKPQE  136 (230)
T ss_dssp             CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTT-----------CTTEEEEECCTTCGGG
T ss_pred             HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhh-----------hcccceEEEeeccCcc
Confidence            3445679999999999999999988874 567899999999999999988653           3457778888766543


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .    .+..+|++++...+++.    ++...++.++.+.|||||.+++..
T Consensus       137 ~----~~~~~~v~~i~~~~~~~----~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         137 Y----ANIVEKVDVIYEDVAQP----NQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             G----TTTCCCEEEEEECCCST----THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c----ccccceeEEeeccccch----HHHHHHHHHHHHhcccCceEEEEe
Confidence            1    45567777766667665    678899999999999999998874

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.66  E-value=1.8e-16  Score=124.16  Aligned_cols=108  Identities=13%  Similarity=0.043  Sum_probs=83.3

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      +..+|+.+|||+|||+|..+..++.. +.++|+|+|+|+.|++.++++...           ..++.++.+|+...+...
T Consensus        52 l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~-----------~~ni~~i~~d~~~~~~~~  120 (209)
T d1nt2a_          52 LKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE-----------RNNIIPLLFDASKPWKYS  120 (209)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH-----------CSSEEEECSCTTCGGGTT
T ss_pred             CCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc-----------cCCceEEEeeccCccccc
Confidence            45679999999999999988888763 556899999999999999988763           236899999988765421


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .  ....+|+|++  .+.|.    .+...++.++.++|||||.+++..
T Consensus       121 ~--~~~~vd~v~~--~~~~~----~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         121 G--IVEKVDLIYQ--DIAQK----NQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             T--TCCCEEEEEE--CCCST----THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c--ccceEEEEEe--cccCh----hhHHHHHHHHHHHhccCCeEEEEE
Confidence            1  1234555544  34433    567889999999999999998875

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=4.7e-16  Score=123.10  Aligned_cols=116  Identities=22%  Similarity=0.255  Sum_probs=89.6

Q ss_pred             HHHHHHH--hccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC
Q 024797           74 KSVLVQL--YARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (262)
Q Consensus        74 ~~~l~~~--~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (262)
                      ..+++.+  ...++.+|||+|||+|..+..+++  .+.++|+++|+++++++.|++++...+..+    ....++.+.++
T Consensus        64 a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~----~~~~~~~~~~g  139 (224)
T d1i1na_          64 AYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTL----LSSGRVQLVVG  139 (224)
T ss_dssp             HHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHH----HHTSSEEEEES
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccc----ccccceEEEEe
Confidence            4455555  557899999999999988877765  356789999999999999999876433221    11346889999


Q ss_pred             cccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          150 DCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       150 d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      |+.....     +.++||+|++..+++++  +        ..+.+.|||||+|++.+..
T Consensus       140 D~~~~~~-----~~~~fD~I~~~~~~~~i--p--------~~l~~~LkpGG~LV~pv~~  183 (224)
T d1i1na_         140 DGRMGYA-----EEAPYDAIHVGAAAPVV--P--------QALIDQLKPGGRLILPVGP  183 (224)
T ss_dssp             CGGGCCG-----GGCCEEEEEECSBBSSC--C--------HHHHHTEEEEEEEEEEESC
T ss_pred             ecccccc-----hhhhhhhhhhhcchhhc--C--------HHHHhhcCCCcEEEEEEcc
Confidence            9877654     56789999999999876  2        2467899999999987643

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.64  E-value=1.9e-15  Score=117.68  Aligned_cols=117  Identities=15%  Similarity=0.184  Sum_probs=90.9

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .+....|||||||+|.++..+++. +...++|+|+++.++..|.++..+.+         ..|+.++++|+..+.  .. 
T Consensus        29 ~~~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~---------l~Ni~~~~~da~~l~--~~-   96 (204)
T d1yzha1          29 GNDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVG---------VPNIKLLWVDGSDLT--DY-   96 (204)
T ss_dssp             TSCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHC---------CSSEEEEECCSSCGG--GT-
T ss_pred             CCCCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhc---------cccceeeecCHHHHh--hh-
Confidence            345668999999999999999874 56679999999999999988877433         246999999998764  11 


Q ss_pred             CCCCCeeEEEEcccccccCCCHHH------HHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEAR------ARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~------~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      +++.++|.|++.+.-.+.  ....      ...+++.++++|+|||.|++.+.+.++.
T Consensus        97 ~~~~~~~~i~i~fPdPw~--K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~  152 (204)
T d1yzha1          97 FEDGEIDRLYLNFSDPWP--KKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLF  152 (204)
T ss_dssp             SCTTCCSEEEEESCCCCC--SGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHH
T ss_pred             ccCCceehhccccccccc--chhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHH
Confidence            267899999987755432  1110      1578999999999999999988776654

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.63  E-value=9.6e-16  Score=128.41  Aligned_cols=118  Identities=21%  Similarity=0.251  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCc
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGD  150 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d  150 (262)
                      .|.+.+.......++.+|||||||+|.++..+++.+..+|+|+|.|+ ++..|++....        .+...++.++++|
T Consensus        25 ~y~~aI~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~--------~~~~~~i~~i~~~   95 (328)
T d1g6q1_          25 SYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVEL--------NGFSDKITLLRGK   95 (328)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHH--------TTCTTTEEEEESC
T ss_pred             HHHHHHHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHH--------hCccccceEEEee
Confidence            34444444444558899999999999998888777777999999996 67788776653        3446679999999


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                      +.++++     ++++||+|++....+++ ........++..+.++|||||.++
T Consensus        96 ~~~l~~-----~~~~~D~i~se~~~~~~-~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_          96 LEDVHL-----PFPKVDIIISEWMGYFL-LYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             TTTSCC-----SSSCEEEEEECCCBTTB-STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             hhhccC-----cccceeEEEEEecceee-ccchhHHHHHHHHHhccCCCeEEE
Confidence            999887     67899999997766544 233457788899999999999986

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.62  E-value=2.6e-15  Score=121.41  Aligned_cols=113  Identities=19%  Similarity=0.207  Sum_probs=90.7

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      ++.........+|||||||+|.++..+++. +..+++++|+ +++++.+++++..        .+...++.+..+|+.. 
T Consensus        73 ~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~--------~~~~~ri~~~~~d~~~-  142 (256)
T d1qzza2          73 PADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFAD--------AGLADRVTVAEGDFFK-  142 (256)
T ss_dssp             HHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH--------TTCTTTEEEEECCTTS-
T ss_pred             HHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhh--------cCCcceeeeeeeeccc-
Confidence            333333356679999999999999999874 4558999998 7799999988763        2345679999999865 


Q ss_pred             ccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          155 HLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       155 ~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +.      +..||+|++.+++|++  +.++..++|++++++|+|||++++..
T Consensus       143 ~~------p~~~D~v~~~~vLh~~--~d~~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         143 PL------PVTADVVLLSFVLLNW--SDEDALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             CC------SCCEEEEEEESCGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cc------cccchhhhcccccccc--CcHHHHHHHHHHHhhcCCcceeEEEE
Confidence            32      3469999999999998  77888999999999999999988764

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.6e-15  Score=124.88  Aligned_cols=121  Identities=21%  Similarity=0.205  Sum_probs=92.1

Q ss_pred             hHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEE
Q 024797           68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLI  147 (262)
Q Consensus        68 ~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~  147 (262)
                      +...|.+.+.......++.+|||||||+|.++..+++.+..+|+|+|.|+.+...++....         .+...++.++
T Consensus        19 r~~~y~~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~---------~~~~~~i~~~   89 (311)
T d2fyta1          19 RTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRL---------NKLEDTITLI   89 (311)
T ss_dssp             HHHHHHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHH---------TTCTTTEEEE
T ss_pred             HHHHHHHHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHH---------hCCCccceEE
Confidence            3344455554444556789999999999999988888777789999999987654443322         3446679999


Q ss_pred             eCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          148 CGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       148 ~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                      ++|+.+++.     +..+||+|++....++. ........++....++|+|||.++
T Consensus        90 ~~~~~~l~~-----~~~~~D~Ivse~~~~~~-~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1          90 KGKIEEVHL-----PVEKVDVIISEWMGYFL-LFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             ESCTTTSCC-----SCSCEEEEEECCCBTTB-TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EeeHHHhcC-----ccccceEEEEeeeeeec-ccccccHHHHHHHHhcCCCCcEEe
Confidence            999999876     67899999997666554 233457788888899999999987

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4.4e-16  Score=130.31  Aligned_cols=125  Identities=13%  Similarity=0.144  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHhccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC
Q 024797           71 NWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG  149 (262)
Q Consensus        71 ~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~  149 (262)
                      ..+..++..+...++++|||+|||+|..+..+++ .+..+++|+|+|+.+++.|++...+....-..-.....+++++++
T Consensus       138 ~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~g  217 (328)
T d1nw3a_         138 DLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERG  217 (328)
T ss_dssp             HHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEEC
T ss_pred             HHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEEC
Confidence            3456677777788999999999999999988876 456689999999999999987655311100000011346999999


Q ss_pred             cccccccccccCCCCC--eeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          150 DCYEVHLDKVLADDAP--FDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       150 d~~~~~~~~~~~~~~~--fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      |+.+.++.     +..  .|+|+++. +.|.    ++....+.++.+.|||||++|+.
T Consensus       218 d~~~~~~~-----~~~~~advi~~~~-~~f~----~~~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         218 DFLSEEWR-----ERIANTSVIFVNN-FAFG----PEVDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             CTTSHHHH-----HHHHHCSEEEECC-TTTC----HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             cccccccc-----cccCcceEEEEcc-eecc----hHHHHHHHHHHHhCCCCcEEEEe
Confidence            99988762     322  47777654 4444    67889999999999999999874

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=1.8e-15  Score=122.50  Aligned_cols=117  Identities=16%  Similarity=0.177  Sum_probs=93.7

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      ++..+.+.|+.+|||+|||+|.++..+++.  +.++|+++|+++++++.|++++...        +...++.+...|+..
T Consensus        95 Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~--------g~~~~v~~~~~d~~~  166 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW--------GLIERVTIKVRDISE  166 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT--------TCGGGEEEECCCGGG
T ss_pred             HHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh--------ccccCcEEEeccccc
Confidence            556667889999999999999999988763  5679999999999999999998743        334568888888644


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHH
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKK  215 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~  215 (262)
                      . +     +...||.|+.     ++    .++..++.++.++|||||.+++.+|..+.+.+.
T Consensus       167 ~-~-----~~~~~D~V~~-----d~----p~p~~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~  213 (266)
T d1o54a_         167 G-F-----DEKDVDALFL-----DV----PDPWNYIDKCWEALKGGGRFATVCPTTNQVQET  213 (266)
T ss_dssp             C-C-----SCCSEEEEEE-----CC----SCGGGTHHHHHHHEEEEEEEEEEESSHHHHHHH
T ss_pred             c-c-----cccceeeeEe-----cC----CCHHHHHHHHHhhcCCCCEEEEEeCcccHHHHH
Confidence            3 2     4678999874     33    446788999999999999999999988765433

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=1.8e-15  Score=126.03  Aligned_cols=117  Identities=21%  Similarity=0.188  Sum_probs=89.0

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      |.+.+.......++.+|||+|||+|.++..+++.+..+|+|+|.|+.+ ..+++...        .++...++.++++|+
T Consensus        21 y~~ai~~~~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~--------~n~~~~~v~~~~~~~   91 (316)
T d1oria_          21 YRNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVK--------ANKLDHVVTIIKGKV   91 (316)
T ss_dssp             HHHHHHTCHHHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHH--------HTTCTTTEEEEESCT
T ss_pred             HHHHHHhccccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHH--------HhCCccccceEeccH
Confidence            333343333345789999999999998888877777789999999854 55555544        234566799999999


Q ss_pred             cccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                      .+++.     +.++||+|++....+++ ........++..+.++|+|||.++
T Consensus        92 ~~~~~-----~~~~~D~ivs~~~~~~l-~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_          92 EEVEL-----PVEKVDIIISEWMGYCL-FYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             TTCCC-----SSSCEEEEEECCCBBTB-TBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             HHccc-----ccceeEEEeeeeeeeee-ccHHHHHHHHHHHHhcCCCCeEEE
Confidence            99886     67899999987666554 233457889999999999999986

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=3.1e-15  Score=124.19  Aligned_cols=128  Identities=17%  Similarity=0.248  Sum_probs=94.4

Q ss_pred             HHHHHHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCcccc--ccccCCCCCeEEEeCc
Q 024797           75 SVLVQLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHH--QRRKKFSFPARLICGD  150 (262)
Q Consensus        75 ~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~--~~~~~~~~~v~~~~~d  150 (262)
                      .++..+...||.+|||+|||+|.++..+++  .+.++|+++|+++++++.|++++...+...  ........++.+.++|
T Consensus        89 ~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d  168 (324)
T d2b25a1          89 MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  168 (324)
T ss_dssp             HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence            355666788999999999999999999887  367799999999999999999876432211  0112345689999999


Q ss_pred             ccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHH
Q 024797          151 CYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIK  214 (262)
Q Consensus       151 ~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~  214 (262)
                      +.+....   .++..||.|++..         .++..++.++.++|||||+|++.+|+.+.+.+
T Consensus       169 i~~~~~~---~~~~~fD~V~LD~---------p~P~~~l~~~~~~LKpGG~lv~~~P~i~Qv~~  220 (324)
T d2b25a1         169 ISGATED---IKSLTFDAVALDM---------LNPHVTLPVFYPHLKHGGVCAVYVVNITQVIE  220 (324)
T ss_dssp             TTCCC----------EEEEEECS---------SSTTTTHHHHGGGEEEEEEEEEEESSHHHHHH
T ss_pred             hhhcccc---cCCCCcceEeecC---------cCHHHHHHHHHHhccCCCEEEEEeCCHHHHHH
Confidence            8765321   1457899998632         23446889999999999999999999876543

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.57  E-value=6.6e-15  Score=116.35  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=85.0

Q ss_pred             HHhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797           79 QLYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (262)
                      .+.+.||.+|||+|||+|..+..+++  .+.+.|+|+|+|+.|++.++++...           ..++..+..|+.....
T Consensus        68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~-----------~~~~~~i~~d~~~~~~  136 (227)
T d1g8aa_          68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE-----------RRNIVPILGDATKPEE  136 (227)
T ss_dssp             CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSS-----------CTTEEEEECCTTCGGG
T ss_pred             ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHh-----------cCCceEEEEECCCccc
Confidence            44567999999999999999999987  3678999999999999999988763           2347778888755432


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ..  .....+|+|++...  +.    ++...++.++.+.|||||.+++++
T Consensus       137 ~~--~~~~~vD~i~~d~~--~~----~~~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         137 YR--ALVPKVDVIFEDVA--QP----TQAKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             GT--TTCCCEEEEEECCC--ST----THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cc--ccccceEEEEEEcc--cc----chHHHHHHHHHHhcccCCeEEEEE
Confidence            11  13467898876433  22    567889999999999999999875

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.56  E-value=8.6e-15  Score=115.30  Aligned_cols=107  Identities=19%  Similarity=0.158  Sum_probs=86.1

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      ..++..+.+.++.+|||||||+|..+..+++. .++|+++|+++++++.|++++..           ..++.++++|...
T Consensus        60 a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~-----------~~nv~~~~~d~~~  127 (224)
T d1vbfa_          60 IFMLDELDLHKGQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSY-----------YNNIKLILGDGTL  127 (224)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTT-----------CSSEEEEESCGGG
T ss_pred             HHHHHHhhhcccceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhc-----------ccccccccCchhh
Confidence            34677778899999999999999888777654 56899999999999999988652           3579999999865


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ...     +.++||+|++..++.++  +        ..+.+.|+|||+|++-+.
T Consensus       128 g~~-----~~~pfD~Iiv~~a~~~i--p--------~~l~~qLk~GGrLV~pvg  166 (224)
T d1vbfa_         128 GYE-----EEKPYDRVVVWATAPTL--L--------CKPYEQLKEGGIMILPIG  166 (224)
T ss_dssp             CCG-----GGCCEEEEEESSBBSSC--C--------HHHHHTEEEEEEEEEEEC
T ss_pred             cch-----hhhhHHHHHhhcchhhh--h--------HHHHHhcCCCCEEEEEEc
Confidence            432     45789999999998876  2        235678999999998653

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.51  E-value=4.9e-14  Score=110.22  Aligned_cols=111  Identities=16%  Similarity=0.147  Sum_probs=89.3

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +..+++.+...++.+|||||||+|..+..++....+.|+++|.++++++.|++++...+.         .++.++++|..
T Consensus        67 ~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~---------~nv~~~~gd~~  137 (215)
T d1jg1a_          67 VAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV---------KNVHVILGDGS  137 (215)
T ss_dssp             HHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC---------CSEEEEESCGG
T ss_pred             HHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC---------ceeEEEECccc
Confidence            455677788899999999999999888877654335799999999999999999885443         46999999987


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ....     +.++||.|++..++.++  +.        .+.+.|+|||+|++-+.
T Consensus       138 ~g~~-----~~~pfD~Iiv~~a~~~i--p~--------~l~~qL~~gGrLv~pv~  177 (215)
T d1jg1a_         138 KGFP-----PKAPYDVIIVTAGAPKI--PE--------PLIEQLKIGGKLIIPVG  177 (215)
T ss_dssp             GCCG-----GGCCEEEEEECSBBSSC--CH--------HHHHTEEEEEEEEEEEC
T ss_pred             cCCc-----ccCcceeEEeecccccC--CH--------HHHHhcCCCCEEEEEEc
Confidence            6543     57899999999999876  22        25677999999998653

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=6.4e-14  Score=119.11  Aligned_cols=132  Identities=12%  Similarity=0.122  Sum_probs=89.0

Q ss_pred             hhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeE
Q 024797           67 KKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR  145 (262)
Q Consensus        67 ~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~  145 (262)
                      ...-..+..++..+.+.++++|||+|||+|..+..++.. +.++++|||+|+.|++.|+++..+.+........-...+.
T Consensus       199 El~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~  278 (406)
T d1u2za_         199 ELLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVE  278 (406)
T ss_dssp             CBCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEE
T ss_pred             cCCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccce
Confidence            344456778888888999999999999999999988764 5668999999999999999887532111000000011122


Q ss_pred             E-EeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          146 L-ICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       146 ~-~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      + ..++....+....  .-..+|+|++++. .|.    ++....|.++.+.|||||+++..
T Consensus       279 ~~~~~~f~~~~~~d~--~~~~adVV~inn~-~f~----~~l~~~L~ei~r~LKPGGrIVs~  332 (406)
T d1u2za_         279 FSLKKSFVDNNRVAE--LIPQCDVILVNNF-LFD----EDLNKKVEKILQTAKVGCKIISL  332 (406)
T ss_dssp             EEESSCSTTCHHHHH--HGGGCSEEEECCT-TCC----HHHHHHHHHHHTTCCTTCEEEES
T ss_pred             eeeeechhhcccccc--ccccceEEEEecc-cCc----hHHHHHHHHHHHhcCCCcEEEEe
Confidence            2 3344333221100  0135788887653 344    77899999999999999998874

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=3.8e-13  Score=108.78  Aligned_cols=133  Identities=11%  Similarity=0.109  Sum_probs=95.8

Q ss_pred             cCccccchhHHHHHH-HHHHHHhccCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccc
Q 024797           60 ASPIIHLKKLNNWIK-SVLVQLYARRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRR  137 (262)
Q Consensus        60 ~~~~~~~~~~~~~~~-~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~  137 (262)
                      ...++-+|.-.+.+. ..+.. ....+.+|||+|||+|..+..++. .+...|+++|+|+.+++.|++++...+      
T Consensus        84 ~~~VlIPRpeTE~lv~~~l~~-~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~------  156 (274)
T d2b3ta1          84 SPATLIPRPDTECLVEQALAR-LPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLA------  156 (274)
T ss_dssp             CTTSCCCCTTHHHHHHHHHHH-SCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHT------
T ss_pred             eccccccccchhhhhhhHhhh-hcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhC------
Confidence            444444565555443 34433 345667899999999999998876 456689999999999999999987432      


Q ss_pred             cCCCCCeEEEeCcccccccccccCCCCCeeEEEEccccc-------------cc----CC----CHHHHHHHHHHHHhcc
Q 024797          138 KKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH-------------YS----WS----TEARARRALANVSALL  196 (262)
Q Consensus       138 ~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~-------------~~----~~----~~~~~~~~l~~~~~~L  196 (262)
                        . .+++++++|+.+. .     ++++||+|+++-...             |-    +.    ......+++..+.+.|
T Consensus       157 --~-~~v~~~~~d~~~~-~-----~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L  227 (274)
T d2b3ta1         157 --I-KNIHILQSDWFSA-L-----AGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL  227 (274)
T ss_dssp             --C-CSEEEECCSTTGG-G-----TTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGE
T ss_pred             --c-ccceeeecccccc-c-----CCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhc
Confidence              2 3599999998763 3     467999999974221             10    00    1134677899999999


Q ss_pred             CCCcEEEEEeCC
Q 024797          197 RPGGTFIGTMPD  208 (262)
Q Consensus       197 ~~gG~li~~~~~  208 (262)
                      +|||.+++.+..
T Consensus       228 ~~~G~l~lEig~  239 (274)
T d2b3ta1         228 VSGGFLLLEHGW  239 (274)
T ss_dssp             EEEEEEEEECCS
T ss_pred             CCCCEEEEEECc
Confidence            999999998753

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.45  E-value=1.5e-13  Score=114.51  Aligned_cols=118  Identities=20%  Similarity=0.184  Sum_probs=88.9

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++...        ++..+++++++|+.+... ....
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~n--------gl~~~~~~~~~d~~~~~~-~~~~  213 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLN--------GVEDRMKFIVGSAFEEME-KLQK  213 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT--------TCGGGEEEEESCHHHHHH-HHHH
T ss_pred             cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHc--------CCCccceeeechhhhhhH-HHHh
Confidence            4678999999999999999888777778999999999999999998743        344568999999875421 1111


Q ss_pred             CCCCeeEEEEccccccc-----CCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAMHYS-----WSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~-----~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ...+||+|++.......     .....+...++..+.++|+|||.|++++..
T Consensus       214 ~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s  265 (324)
T d2as0a2         214 KGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  265 (324)
T ss_dssp             TTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             ccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCC
Confidence            45789999986532111     001234567889999999999999988754

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.44  E-value=3.7e-13  Score=108.39  Aligned_cols=102  Identities=10%  Similarity=0.041  Sum_probs=82.8

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ..++.+|||+|||+|.++..+++.+..+|+++|+++.+++.+++++..        +++..+++++++|+.++.      
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~--------n~l~~~v~~~~~D~~~~~------  170 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL--------NKVEDRMSAYNMDNRDFP------  170 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHH--------TTCTTTEEEECSCTTTCC------
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHH--------hCCCceEEEEEcchHHhc------
Confidence            368999999999999999998877766899999999999999998873        344567999999998875      


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      +.+.||.|++.....        ...++..+.+.|++||++.+.
T Consensus       171 ~~~~~D~Ii~~~p~~--------~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         171 GENIADRILMGYVVR--------THEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             CCSCEEEEEECCCSS--------GGGGHHHHHHHEEEEEEEEEE
T ss_pred             cCCCCCEEEECCCCc--------hHHHHHHHHhhcCCCCEEEEE
Confidence            467899998753211        235677888999999998653

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=4.9e-13  Score=102.69  Aligned_cols=127  Identities=17%  Similarity=0.160  Sum_probs=95.7

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      ++.++..+.+.++..+||++||+|.++..+++. +.++|+|+|.++.|++.|++++..          ...++.++++++
T Consensus        12 l~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~----------~~~r~~~~~~~f   81 (192)
T d1m6ya2          12 VREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKE----------FSDRVSLFKVSY   81 (192)
T ss_dssp             HHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGG----------GTTTEEEEECCG
T ss_pred             HHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcc----------ccccccchhHHH
Confidence            344566667789999999999999999998874 567899999999999999998862          355799999998


Q ss_pred             cccccccccCCCCCeeEEEEccccccc-----CCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAMHYS-----WSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l~~~-----~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      .++.........++||.|+....+...     -.........+..+.++|+|||.+++.....
T Consensus        82 ~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s  144 (192)
T d1m6ya2          82 READFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHS  144 (192)
T ss_dssp             GGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSH
T ss_pred             hhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeecccc
Confidence            765431111145799999987655210     0122556788999999999999997766543

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.42  E-value=3.4e-13  Score=100.06  Aligned_cols=108  Identities=14%  Similarity=0.039  Sum_probs=83.5

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      .+.+|||+|||+|.++...+..+..+|+++|.++.+++.+++++...+        ...+++++++|+......    ..
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~--------~~~~~~ii~~D~~~~l~~----~~   81 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTK--------AENRFTLLKMEAERAIDC----LT   81 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTT--------CGGGEEEECSCHHHHHHH----BC
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcc--------cccchhhhcccccccccc----cc
Confidence            688999999999999998877777799999999999999999987543        344689999998764211    46


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHH--hccCCCcEEEEEeCC
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPD  208 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~--~~L~~gG~li~~~~~  208 (262)
                      ++||+|++.....     .......+..+.  ++|+|+|.+++..+.
T Consensus        82 ~~fDiIf~DPPy~-----~~~~~~~l~~i~~~~~L~~~g~iiiE~~~  123 (152)
T d2esra1          82 GRFDLVFLDPPYA-----KETIVATIEALAAKNLLSEQVMVVCETDK  123 (152)
T ss_dssp             SCEEEEEECCSSH-----HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             cccceeEechhhc-----cchHHHHHHHHHHCCCcCCCeEEEEEeCC
Confidence            7899999865332     234455666554  579999999997654

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=3.1e-13  Score=106.36  Aligned_cols=115  Identities=19%  Similarity=0.171  Sum_probs=85.0

Q ss_pred             HHHHHHH--hccCCCeEEEecCCCCcchHHHHhc-------CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCe
Q 024797           74 KSVLVQL--YARRGDVVLDLACGKGGDLIKWDKA-------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPA  144 (262)
Q Consensus        74 ~~~l~~~--~~~~~~~vLDiGcG~G~~~~~l~~~-------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v  144 (262)
                      ..+++.+  ...++.+|||||||+|..+..+++.       ...+|+++|+++++++.|++++...+...    ....++
T Consensus        68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~----~~~~nv  143 (223)
T d1r18a_          68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM----LDSGQL  143 (223)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH----HHHTSE
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhh----cCccEE
Confidence            3455554  4678999999999999888776542       12479999999999999998764321110    012469


Q ss_pred             EEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       145 ~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      .+.++|......     +.++||.|++..++.++  +        ..+.+.|++||++++-+.
T Consensus       144 ~~~~~d~~~~~~-----~~~~fD~Iiv~~a~~~~--p--------~~l~~~Lk~gG~lV~pvg  191 (223)
T d1r18a_         144 LIVEGDGRKGYP-----PNAPYNAIHVGAAAPDT--P--------TELINQLASGGRLIVPVG  191 (223)
T ss_dssp             EEEESCGGGCCG-----GGCSEEEEEECSCBSSC--C--------HHHHHTEEEEEEEEEEES
T ss_pred             EEEecccccccc-----cccceeeEEEEeechhc--h--------HHHHHhcCCCcEEEEEEe
Confidence            999999876543     56789999999999876  2        236789999999988654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.36  E-value=3.8e-12  Score=97.74  Aligned_cols=74  Identities=16%  Similarity=0.136  Sum_probs=61.1

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ...-.|.+|||+|||+|.++..++..+..+|+|+|+++.+++.|+++..              ++.++++|+.++     
T Consensus        44 ~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~--------------~~~~~~~D~~~l-----  104 (197)
T d1ne2a_          44 DGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG--------------GVNFMVADVSEI-----  104 (197)
T ss_dssp             HTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT--------------TSEEEECCGGGC-----
T ss_pred             cCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccc--------------cccEEEEehhhc-----
Confidence            3334688999999999988877766677789999999999999998865              488999998764     


Q ss_pred             cCCCCCeeEEEEcccc
Q 024797          160 LADDAPFDICSCQFAM  175 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l  175 (262)
                         +++||+|+++-.+
T Consensus       105 ---~~~fD~Vi~NPPf  117 (197)
T d1ne2a_         105 ---SGKYDTWIMNPPF  117 (197)
T ss_dssp             ---CCCEEEEEECCCC
T ss_pred             ---CCcceEEEeCccc
Confidence               4689999998544

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.36  E-value=4.4e-13  Score=111.24  Aligned_cols=115  Identities=13%  Similarity=0.132  Sum_probs=85.6

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||++||+|.++..++. +..+|+++|+|+.+++.|++++...+.         .+++++++|+.++... ....
T Consensus       144 ~~g~rVLDl~~gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl---------~~~~~i~~d~~~~~~~-~~~~  212 (318)
T d1wxxa2         144 FRGERALDVFSYAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGL---------GNVRVLEANAFDLLRR-LEKE  212 (318)
T ss_dssp             CCEEEEEEETCTTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTC---------TTEEEEESCHHHHHHH-HHHT
T ss_pred             hCCCeeeccCCCCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCC---------CCcceeeccHHHHhhh-hHhh
Confidence            4688999999999999988765 445899999999999999999874332         3589999998764211 1114


Q ss_pred             CCCeeEEEEcccccc-----cCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          163 DAPFDICSCQFAMHY-----SWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~-----~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .++||+|++......     ..........++..+.++|+|||.|++++.+
T Consensus       213 ~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         213 GERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             TCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            578999998652211     0112345677899999999999999988754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.35  E-value=2.1e-12  Score=106.84  Aligned_cols=117  Identities=13%  Similarity=0.130  Sum_probs=88.4

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCC-CCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKF-SFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~-~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      .++.+|||++||+|.++..++..+...|+++|+|+.+++.+++++...        ++ ..+++++++|+.+.- .....
T Consensus       143 ~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n--------~l~~~~~~~i~~d~~~~l-~~~~~  213 (317)
T d2b78a2         143 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEAN--------HLDMANHQLVVMDVFDYF-KYARR  213 (317)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHT--------TCCCTTEEEEESCHHHHH-HHHHH
T ss_pred             hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHh--------cccCcceEEEEccHHHHH-HHHHh
Confidence            578999999999999998877777778999999999999999998632        22 246899999986542 11111


Q ss_pred             CCCCeeEEEEcccc-----cccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          162 DDAPFDICSCQFAM-----HYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       162 ~~~~fD~V~~~~~l-----~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ...+||+|++.---     ...+....+...++..+.++|+|||.|++++.+
T Consensus       214 ~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         214 HHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             TTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             hcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            35689999986321     111223356788999999999999999998764

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.35  E-value=4.1e-12  Score=97.84  Aligned_cols=117  Identities=18%  Similarity=0.180  Sum_probs=78.0

Q ss_pred             cCCCeEEEecCCCCcchHHH----Hhc-----CCCeEEEEeCChhHHHHHHHHhccCccc----------ccccc-----
Q 024797           83 RRGDVVLDLACGKGGDLIKW----DKA-----KIGYYVGIDIAEGSIEDCRTRYNGDADH----------HQRRK-----  138 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l----~~~-----~~~~v~gvD~s~~~~~~a~~~~~~~~~~----------~~~~~-----  138 (262)
                      .+..+||++|||+|.-.-.+    ...     ..-+++|+|+|+.+++.|++..-.....          .....     
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            34569999999999853322    211     1125999999999999998643211000          00000     


Q ss_pred             -------CCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          139 -------KFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       139 -------~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                             .....+.+...+......    .+.+.||+|+|.+++.|+  +.+...++++.+++.|+|||+|++.
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~fDvI~CRNVLiYf--~~~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQY----NVPGPFDAIFCRNVMIYF--DKTTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSC----CCCCCEEEEEECSSGGGS--CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ceeehHHHHHHHHHHhhhhcccccc----CCCCCccEEEeehhHHhc--CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence                   011224444444433221    145789999999999999  8888999999999999999999875

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.32  E-value=4.2e-12  Score=103.89  Aligned_cols=130  Identities=16%  Similarity=0.107  Sum_probs=90.4

Q ss_pred             cchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC-CC
Q 024797           65 HLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS-FP  143 (262)
Q Consensus        65 ~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~-~~  143 (262)
                      ..+....|+...+...  .++.+|||++||+|.++..++..+. +|++||.|+.+++.|++++...        +.. .+
T Consensus       115 dqr~nr~~~~~~~~~~--~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln--------~~~~~~  183 (309)
T d2igta1         115 EQIVHWEWLKNAVETA--DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLA--------GLEQAP  183 (309)
T ss_dssp             GGHHHHHHHHHHHHHS--SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHH--------TCTTSC
T ss_pred             chhHHHHHHHHHHhhc--cCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhh--------cccCCc
Confidence            3455566766665433  4678999999999999998877665 7999999999999999987632        222 35


Q ss_pred             eEEEeCcccccccccccCCCCCeeEEEEccc---cc---ccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          144 ARLICGDCYEVHLDKVLADDAPFDICSCQFA---MH---YSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       144 v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~---l~---~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ++++++|+..+--. ......+||+|++.--   ..   -.+.-..+...++..+.++|+|||.+++.+
T Consensus       184 ~~~i~~D~~~~l~~-~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         184 IRWICEDAMKFIQR-EERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             EEEECSCHHHHHHH-HHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             EEEEeCCHHHhHHH-HhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            89999998765211 0013578999998531   10   001123456778888999999998755443

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.27  E-value=3.3e-11  Score=93.23  Aligned_cols=76  Identities=17%  Similarity=0.165  Sum_probs=62.4

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      -.|.+|||+|||+|.++..++..+..+|+|+|+++.+++.|++++..          ...++.++++|+..+        
T Consensus        45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~----------~~~~~~~~~~d~~~~--------  106 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGE----------FKGKFKVFIGDVSEF--------  106 (201)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGG----------GTTSEEEEESCGGGC--------
T ss_pred             CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHH----------cCCCceEEECchhhh--------
Confidence            46889999999999998887766666899999999999999998763          244578899998664        


Q ss_pred             CCCeeEEEEccccc
Q 024797          163 DAPFDICSCQFAMH  176 (262)
Q Consensus       163 ~~~fD~V~~~~~l~  176 (262)
                      +++||+|+++-.+.
T Consensus       107 ~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1         107 NSRVDIVIMNPPFG  120 (201)
T ss_dssp             CCCCSEEEECCCCS
T ss_pred             CCcCcEEEEcCccc
Confidence            46799999987543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=2.1e-11  Score=92.97  Aligned_cols=106  Identities=9%  Similarity=0.010  Sum_probs=81.7

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      .+.+|||++||+|.++.+.+..+...|+.||.++.+++.+++++...+         ..++.++++|+..+...    ..
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~---------~~~~~ii~~d~~~~l~~----~~  109 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLK---------AGNARVVNSNAMSFLAQ----KG  109 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT---------CCSEEEECSCHHHHHSS----CC
T ss_pred             chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcc---------ccceeeeeecccccccc----cc
Confidence            678999999999999998887788899999999999999999887432         23578899998765321    46


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHH--hccCCCcEEEEEeC
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMP  207 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~--~~L~~gG~li~~~~  207 (262)
                      .+||+|++.--...     .....++..+.  .+|+++|.+++...
T Consensus       110 ~~fDlIf~DPPY~~-----~~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         110 TPHNIVFVDPPFRR-----GLLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             CCEEEEEECCSSST-----TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             cccCEEEEcCcccc-----chHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            78999999765432     22345555554  46999999998754

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.20  E-value=2.2e-11  Score=92.70  Aligned_cols=112  Identities=14%  Similarity=0.091  Sum_probs=83.5

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||++||+|.++.+.+..+..+|++||.++.+++.+++++...        +...+++++++|+...-. .....
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~--------~~~~~~~i~~~D~~~~l~-~~~~~  110 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAIT--------KEPEKFEVRKMDANRALE-QFYEE  110 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH--------TCGGGEEEEESCHHHHHH-HHHHT
T ss_pred             cCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhh--------hcccccccccccchhhhh-hhccc
Confidence            368899999999999999988888889999999999999999988632        234468999999865421 11113


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHH--hccCCCcEEEEEeCC
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVS--ALLRPGGTFIGTMPD  208 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~--~~L~~gG~li~~~~~  208 (262)
                      ..+||+|++.--...     ......+..+.  .+|+++|.+++....
T Consensus       111 ~~~fDlIflDPPY~~-----~~~~~~l~~i~~~~~L~~~giIi~E~~~  153 (182)
T d2fhpa1         111 KLQFDLVLLDPPYAK-----QEIVSQLEKMLERQLLTNEAVIVCETDK  153 (182)
T ss_dssp             TCCEEEEEECCCGGG-----CCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CCCcceEEechhhhh-----hHHHHHHHHHHHCCCCCCCEEEEEEcCC
Confidence            568999998764321     22345566654  479999999987653

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.18  E-value=4.8e-11  Score=94.95  Aligned_cols=98  Identities=17%  Similarity=0.158  Sum_probs=77.4

Q ss_pred             cCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLA  161 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  161 (262)
                      ....+|||||||+|.++..+++ .+.-+++.+|+. ..++.+               ....+++++.+|+.+. .     
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~---------------~~~~ri~~~~gd~~~~-~-----  137 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIENA---------------PPLSGIEHVGGDMFAS-V-----  137 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTC---------------CCCTTEEEEECCTTTC-C-----
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhhcc---------------CCCCCeEEecCCcccc-c-----
Confidence            3457999999999999999887 455579999984 343211               1245799999998652 2     


Q ss_pred             CCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          162 DDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       162 ~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      |  ..|++++..++|++  +.++..++|+++++.|+|||.+++..
T Consensus       138 p--~~D~~~l~~vLh~~--~de~~~~iL~~~~~aL~pgg~llI~e  178 (244)
T d1fp1d2         138 P--QGDAMILKAVCHNW--SDEKCIEFLSNCHKALSPNGKVIIVE  178 (244)
T ss_dssp             C--CEEEEEEESSGGGS--CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             c--cceEEEEehhhhhC--CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            2  45999999999998  88889999999999999999988754

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=5.1e-11  Score=89.76  Aligned_cols=110  Identities=16%  Similarity=0.137  Sum_probs=72.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .++.+|||+|||+|.++..++..+. .++++|.++.+++.+++++...        +..  ..+...+...+... ....
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~--------~~~--~~v~~~~~d~~~~~-~~~~  107 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRT--------GLG--ARVVALPVEVFLPE-AKAQ  107 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHH--------TCC--CEEECSCHHHHHHH-HHHT
T ss_pred             cCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhh--------ccc--cceeeeehhccccc-cccc
Confidence            5788999999999999988776554 7889999999999999988732        222  23444443321100 0014


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ..+||+|++.--+..  .-.+....++.  ..+|+|||++++..+.
T Consensus       108 ~~~fD~If~DPPY~~--~~~~~l~~l~~--~~ll~~~g~ivie~~~  149 (171)
T d1ws6a1         108 GERFTVAFMAPPYAM--DLAALFGELLA--SGLVEAGGLYVLQHPK  149 (171)
T ss_dssp             TCCEEEEEECCCTTS--CTTHHHHHHHH--HTCEEEEEEEEEEEET
T ss_pred             CCccceeEEcccccc--CHHHHHHHHHH--cCCcCCCeEEEEEecC
Confidence            578999998754331  11122333332  3579999999987543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.16  E-value=9.4e-11  Score=91.42  Aligned_cols=111  Identities=13%  Similarity=0.074  Sum_probs=81.4

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc-cccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-LDKV  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~  159 (262)
                      .++.+|||+|||+|..+..+++.  ..++++++|+++++++.|++.+...        ++..+++++.+|..+.- ....
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~--------gl~~~i~l~~Gd~~e~l~~l~~  126 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA--------GLQDKVTILNGASQDLIPQLKK  126 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHH--------TCGGGEEEEESCHHHHGGGHHH
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHc--------CCCccceeeeccccccccchhh
Confidence            35679999999999998888763  4578999999999999999988742        44567999999986641 1000


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ....+.||+|++...-..     ......+.+..+.|+|||++++..
T Consensus       127 ~~~~~~~D~ifiD~~~~~-----~~~~~~l~~~~~lLkpGGvIv~Dd  168 (214)
T d2cl5a1         127 KYDVDTLDMVFLDHWKDR-----YLPDTLLLEKCGLLRKGTVLLADN  168 (214)
T ss_dssp             HSCCCCEEEEEECSCGGG-----HHHHHHHHHHTTCEEEEEEEEESC
T ss_pred             cccccccceeeecccccc-----cccHHHHHHHhCccCCCcEEEEeC
Confidence            113578999998753321     223345777889999999988743

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.13  E-value=5.3e-10  Score=89.82  Aligned_cols=131  Identities=11%  Similarity=0.034  Sum_probs=87.1

Q ss_pred             cccchhHHHH-HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCC
Q 024797           63 IIHLKKLNNW-IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFS  141 (262)
Q Consensus        63 ~~~~~~~~~~-~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~  141 (262)
                      ++-+|.-.+. +...+......+..+|||+|||+|..+..++..+..+|+++|+|+++++.|++++...        +..
T Consensus        88 vlIPRpeTE~lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~--------~~~  159 (271)
T d1nv8a_          88 VFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH--------GVS  159 (271)
T ss_dssp             SCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT--------TCT
T ss_pred             ccCchhhhhhhhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHc--------CCC
Confidence            3334444333 3333433334456789999999999888887777778999999999999999998743        334


Q ss_pred             CCeEEEeCcccccccccccCCCCCeeEEEEccccc----cc-----CCC----------HHHHHHHHHHHHhccCCCcEE
Q 024797          142 FPARLICGDCYEVHLDKVLADDAPFDICSCQFAMH----YS-----WST----------EARARRALANVSALLRPGGTF  202 (262)
Q Consensus       142 ~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~----~~-----~~~----------~~~~~~~l~~~~~~L~~gG~l  202 (262)
                      .++.+..+|+.+....    ..++||+|+++--..    ..     +++          ....+++   +.+.|+|||.+
T Consensus       160 ~~~~i~~~~~~~~~~~----~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l  232 (271)
T d1nv8a_         160 DRFFVRKGEFLEPFKE----KFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIV  232 (271)
T ss_dssp             TSEEEEESSTTGGGGG----GTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEE
T ss_pred             ceeEEeeccccccccc----ccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEE
Confidence            4577888887654321    247899999974210    00     011          1223333   46789999999


Q ss_pred             EEEeCC
Q 024797          203 IGTMPD  208 (262)
Q Consensus       203 i~~~~~  208 (262)
                      ++.+..
T Consensus       233 ~~Eig~  238 (271)
T d1nv8a_         233 LMEIGE  238 (271)
T ss_dssp             EEECCT
T ss_pred             EEEECH
Confidence            998853

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.2e-10  Score=89.50  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=83.9

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc-cc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD-KV  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~-~~  159 (262)
                      ....+|||+|||+|..+..++..  ..++++.+|.+++..+.|++.+...        +...+++++.+|+.+.... ..
T Consensus        58 ~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a--------g~~~~i~~~~Gda~e~l~~~~~  129 (219)
T d2avda1          58 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA--------EAEHKIDLRLKPALETLDELLA  129 (219)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT--------TCTTTEEEEESCHHHHHHHHHH
T ss_pred             cCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc--------CccceEEEEEeehhhcchhhhh
Confidence            46789999999999888888763  4678999999999999999998743        4456799999998653211 00


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ....++||+|+....-       ......+..+.+.|+|||.+++..
T Consensus       130 ~~~~~~fD~ifiD~dk-------~~y~~~~~~~~~lL~~GGvii~Dn  169 (219)
T d2avda1         130 AGEAGTFDVAVVDADK-------ENCSAYYERCLQLLRPGGILAVLR  169 (219)
T ss_dssp             TTCTTCEEEEEECSCS-------TTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             hcccCCccEEEEeCCH-------HHHHHHHHHHHHHhcCCcEEEEeC
Confidence            1135789999987533       334667788899999999999964

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.02  E-value=3.4e-10  Score=91.52  Aligned_cols=122  Identities=16%  Similarity=0.116  Sum_probs=85.8

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCcccc-ccccCCCCCeEEEeCcccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHH-QRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ...++.+||.+|+|.|..+..+++....+++.||+++.+++.|++.+....... ........+++++.+|+..+--   
T Consensus        69 ~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~---  145 (276)
T d1mjfa_          69 AHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIK---  145 (276)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHH---
T ss_pred             cCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHh---
Confidence            345678999999999998888877777789999999999999998765211100 0001124679999999876532   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                        ..++||+|++...-..-....-.-..+++.+.+.|+|||++++...
T Consensus       146 --~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~  191 (276)
T d1mjfa_         146 --NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQAG  191 (276)
T ss_dssp             --HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             --ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEecC
Confidence              3578999998654321100000125789999999999999988653

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.02  E-value=3.4e-10  Score=89.93  Aligned_cols=96  Identities=15%  Similarity=0.134  Sum_probs=75.7

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ...+|||||||+|..+..+++. +.-++++.|+. +.++.+               ....+++++.+|+.+. .      
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~~---------------~~~~rv~~~~gD~f~~-~------  136 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVENL---------------SGSNNLTYVGGDMFTS-I------  136 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTTC---------------CCBTTEEEEECCTTTC-C------
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHhC---------------cccCceEEEecCcccC-C------
Confidence            4468999999999999988774 55589999984 343322               1245799999998752 2      


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC---cEEEEE
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG---GTFIGT  205 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g---G~li~~  205 (262)
                       ..+|++++..++|++  +.++..++|+++++.|+||   |++++.
T Consensus       137 -p~aD~~~l~~vLHdw--~d~~~~~iL~~~~~al~pgg~~~~lli~  179 (244)
T d1fp2a2         137 -PNADAVLLKYILHNW--TDKDCLRILKKCKEAVTNDGKRGKVTII  179 (244)
T ss_dssp             -CCCSEEEEESCGGGS--CHHHHHHHHHHHHHHHSGGGCCCEEEEE
T ss_pred             -CCCcEEEEEeecccC--ChHHHHHHHHHHHHHcCcccCCcEEEEE
Confidence             357999999999998  8889999999999999998   666554

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.02  E-value=1.5e-09  Score=89.03  Aligned_cols=118  Identities=17%  Similarity=0.076  Sum_probs=83.9

Q ss_pred             hccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           81 YARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ....+.+||.+|.|.|..+..+++. +..++++||+++++++.|++.+...+..    ..-..+++++.+|+...-..  
T Consensus        74 ~~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~----~~~d~rv~i~~~Da~~~l~~--  147 (312)
T d1uira_          74 THPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQG----AFDDPRAVLVIDDARAYLER--  147 (312)
T ss_dssp             HSSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTT----GGGCTTEEEEESCHHHHHHH--
T ss_pred             hCCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccC----ccCCCceEEEEchHHHHhhh--
Confidence            3456789999999999888888775 4568999999999999999987421110    01145799999999775321  


Q ss_pred             cCCCCCeeEEEEcccccccCCCH---HHHHHHHHHHHhccCCCcEEEEEe
Q 024797          160 LADDAPFDICSCQFAMHYSWSTE---ARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~---~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                        .+.+||+|++...-.+.....   -.-..+++.+.+.|+|||++++-+
T Consensus       148 --~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         148 --TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             --CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             --cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence              457899999765211110000   012578999999999999998754

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2e-09  Score=85.68  Aligned_cols=132  Identities=8%  Similarity=0.128  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHhc--cCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeE
Q 024797           69 LNNWIKSVLVQLYA--RRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPAR  145 (262)
Q Consensus        69 ~~~~~~~~l~~~~~--~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~  145 (262)
                      +..|+..++.....  .+..+|||+|||+|.....++.. +..+++|+|+|+++++.|++++..        .++..++.
T Consensus        44 ~~~~i~~l~~~~~~~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~--------n~l~~~~~  115 (250)
T d2h00a1          44 YIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQ--------NNLSDLIK  115 (250)
T ss_dssp             HHHHHHHHHCCCCGGGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHH--------TTCTTTEE
T ss_pred             HHHHHHHHhhhhccCccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHH--------hCCCccee
Confidence            34566655433222  23458999999999988887763 456899999999999999999873        34456677


Q ss_pred             EEeCccccccccccc-CCCCCeeEEEEcccccccCCC-------------------------------HHHHHHHHHHHH
Q 024797          146 LICGDCYEVHLDKVL-ADDAPFDICSCQFAMHYSWST-------------------------------EARARRALANVS  193 (262)
Q Consensus       146 ~~~~d~~~~~~~~~~-~~~~~fD~V~~~~~l~~~~~~-------------------------------~~~~~~~l~~~~  193 (262)
                      +...+.....+.... ..+++||+|+|+--++...+.                               .....+++++..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~~~~e~~~~~~~~k~~~~~p~~~~~~~~~el~~~gGe~~F~~~ii~es~  195 (250)
T d2h00a1         116 VVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSL  195 (250)
T ss_dssp             EEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHHH
T ss_pred             eeeeccHHhhhhhhhhcccCceeEEEecCcccccchhhhccccccccccCchhhcCccccccccccchhhHHHHHHHHHH
Confidence            777665433221111 135689999998654321000                               013556677778


Q ss_pred             hccCCCcEEEEEeCC
Q 024797          194 ALLRPGGTFIGTMPD  208 (262)
Q Consensus       194 ~~L~~gG~li~~~~~  208 (262)
                      ..++..|++...+..
T Consensus       196 ~~~~~~g~~t~~ig~  210 (250)
T d2h00a1         196 QLKKRLRWYSCMLGK  210 (250)
T ss_dssp             HHGGGBSCEEEEESS
T ss_pred             HHhhcCcEEEEEecc
Confidence            888999988776654

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.98  E-value=1.7e-09  Score=89.66  Aligned_cols=130  Identities=17%  Similarity=0.151  Sum_probs=88.9

Q ss_pred             ccchhHHHHHHHHHHHH-hccCCCeEEEecCCCCcchHHHHhc------CCCeEEEEeCChhHHHHHHHHhccCcccccc
Q 024797           64 IHLKKLNNWIKSVLVQL-YARRGDVVLDLACGKGGDLIKWDKA------KIGYYVGIDIAEGSIEDCRTRYNGDADHHQR  136 (262)
Q Consensus        64 ~~~~~~~~~~~~~l~~~-~~~~~~~vLDiGcG~G~~~~~l~~~------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~  136 (262)
                      +.++.+...+..++..+ ...++.+|||.|||+|.++..+...      ....++|+|+++.++..|+.+....      
T Consensus        96 ~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~------  169 (328)
T d2f8la1          96 MTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ------  169 (328)
T ss_dssp             CCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH------
T ss_pred             ECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh------
Confidence            44566655555554433 3456679999999999998877541      2226999999999999998876521      


Q ss_pred             ccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCCCH--------------HHHHHHHHHHHhccCCCcEE
Q 024797          137 RKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWSTE--------------ARARRALANVSALLRPGGTF  202 (262)
Q Consensus       137 ~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~--------------~~~~~~l~~~~~~L~~gG~l  202 (262)
                          .....+.++|.....      +..+||+|+++-.+.......              .....++..+.+.|+|||++
T Consensus       170 ----~~~~~~~~~d~~~~~------~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~  239 (328)
T d2f8la1         170 ----RQKMTLLHQDGLANL------LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYL  239 (328)
T ss_dssp             ----TCCCEEEESCTTSCC------CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEE
T ss_pred             ----hhhhhhhcccccccc------ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCce
Confidence                334667777765543      467899999986543221110              11234789999999999999


Q ss_pred             EEEeCCh
Q 024797          203 IGTMPDA  209 (262)
Q Consensus       203 i~~~~~~  209 (262)
                      ++.+|+.
T Consensus       240 ~~I~p~~  246 (328)
T d2f8la1         240 FFLVPDA  246 (328)
T ss_dssp             EEEEEGG
T ss_pred             EEEecCc
Confidence            8888754

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.94  E-value=4.4e-09  Score=79.41  Aligned_cols=122  Identities=15%  Similarity=0.142  Sum_probs=89.5

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      +.++..+.+.++..++|+.||.|.++..++.. .++|+|+|.++++++.|++..             ..++.+++++..+
T Consensus         8 ~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~~-------------~~~~~~~~~~f~~   73 (182)
T d1wg8a2           8 QEALDLLAVRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGLH-------------LPGLTVVQGNFRH   73 (182)
T ss_dssp             HHHHHHHTCCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHTC-------------CTTEEEEESCGGG
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhcc-------------ccceeEeehHHHH
Confidence            44555567789999999999999999999875 569999999999999998753             2358889988776


Q ss_pred             cccccccCCCCCeeEEEEccccccc-----CCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYS-----WSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~-----~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      +.........+.+|.|+....+..+     -.........|......|++||.+++.+.+.
T Consensus        74 ~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          74 LKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             HHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             HHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            5421111135789999987755322     0111345668899999999999998776543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.93  E-value=6.4e-09  Score=84.73  Aligned_cols=119  Identities=17%  Similarity=0.125  Sum_probs=83.6

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...+.+||-+|.|.|..+..+++.. ..+++.+|+++.+++.|++.++.....     --..+++++.+|+..+-..   
T Consensus       104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~-----~~dprv~i~i~Da~~~l~~---  175 (312)
T d2b2ca1         104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCG-----FSHPKLDLFCGDGFEFLKN---  175 (312)
T ss_dssp             SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGG-----GGCTTEEEECSCHHHHHHH---
T ss_pred             CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccc-----cCCCCeEEEEchHHHHHHh---
Confidence            4567899999999999999888754 468999999999999999987532110     1146799999998765321   


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                       ...+||+|++...-.......-.-..+++.+++.|+|||+++.-..+.
T Consensus       176 -~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~  223 (312)
T d2b2ca1         176 -HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGESV  223 (312)
T ss_dssp             -CTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             -CCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecCCh
Confidence             467899999875432211111224678999999999999999876543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.92  E-value=1.7e-09  Score=84.63  Aligned_cols=108  Identities=12%  Similarity=0.067  Sum_probs=83.2

Q ss_pred             cCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc-
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV-  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~-  159 (262)
                      ..+.+|||+|+++|.-+..++..  ..++++.+|.+++..+.|++.+...        +...+++++.+++.+.-. .+ 
T Consensus        58 ~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~--------g~~~~i~~~~g~a~~~L~-~l~  128 (227)
T d1susa1          58 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA--------GVDHKIDFREGPALPVLD-EMI  128 (227)
T ss_dssp             HTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT--------TCGGGEEEEESCHHHHHH-HHH
T ss_pred             cCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh--------ccccceeeeehHHHHHHH-HHH
Confidence            46789999999999888888763  4679999999999999999998853        345579999999865311 10 


Q ss_pred             --cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          160 --LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       160 --~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                        ....++||+|++...-       ......+..+.+.|+|||.+++..
T Consensus       129 ~~~~~~~~fD~iFiDa~k-------~~y~~~~e~~~~ll~~gGiii~DN  170 (227)
T d1susa1         129 KDEKNHGSYDFIFVDADK-------DNYLNYHKRLIDLVKVGGVIGYDN  170 (227)
T ss_dssp             HCGGGTTCBSEEEECSCS-------TTHHHHHHHHHHHBCTTCCEEEET
T ss_pred             hccccCCceeEEEeccch-------hhhHHHHHHHHhhcCCCcEEEEcc
Confidence              0024689999987633       335678888899999999999973

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.92  E-value=2e-09  Score=85.52  Aligned_cols=95  Identities=17%  Similarity=0.168  Sum_probs=74.4

Q ss_pred             CCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      ..+|||||||+|..+..+++. +.-+++++|+.+ .++.+               ....++.+..+|+.+ +.     |.
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~---------------~~~~r~~~~~~d~~~-~~-----P~  139 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDA---------------PSYPGVEHVGGDMFV-SI-----PK  139 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTC---------------CCCTTEEEEECCTTT-CC-----CC
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhc---------------ccCCceEEecccccc-cC-----CC
Confidence            468999999999999999874 556899999965 32211               124569999999865 23     32


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        .|++++..++|..  +.++...+|+++++.|+|||.+++.
T Consensus       140 --ad~~~l~~vlh~~--~d~~~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         140 --ADAVFMKWICHDW--SDEHCLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             --CSCEECSSSSTTS--CHHHHHHHHHHHHHHCCSSSCEEEE
T ss_pred             --cceEEEEEEeecC--CHHHHHHHHHHHHHhcCCCceEEEE
Confidence              4777888888877  7889999999999999999998775

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.91  E-value=1.1e-08  Score=82.36  Aligned_cols=119  Identities=15%  Similarity=0.128  Sum_probs=86.0

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...+.+||-+|.|.|..+..+++. +..+++.+|+++.+++.|++.+....     ......+++++.+|+...-..   
T Consensus        73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~-----~~~~d~r~~i~~~D~~~~l~~---  144 (274)
T d1iy9a_          73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA-----GKLDDPRVDVQVDDGFMHIAK---  144 (274)
T ss_dssp             SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHH-----TTTTSTTEEEEESCSHHHHHT---
T ss_pred             cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhc-----ccccCCCeEEEechHHHHHhh---
Confidence            456789999999999999888875 45689999999999999999874210     011246799999998765331   


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                       .+++||+|++...-..-....-.-..+++.+.+.|+|||.++....++
T Consensus       145 -~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~  192 (274)
T d1iy9a_         145 -SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQTDNP  192 (274)
T ss_dssp             -CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             -cCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEecCCc
Confidence             467899999865321110000013578999999999999999876543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=7.8e-09  Score=83.55  Aligned_cols=118  Identities=19%  Similarity=0.118  Sum_probs=83.8

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...+.+||-+|.|.|..+..+++. ...+++.+|+++.+++.|++.+.....     .....+++++.+|+..+-..   
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~-----~~~d~rv~i~~~Da~~~l~~---  147 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI-----GYSSSKLTLHVGDGFEFMKQ---  147 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG-----GGGCTTEEEEESCHHHHHHT---
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcc-----ccCCCCceEEEccHHHHHhc---
Confidence            456789999999999999988875 466899999999999999997742100     11246799999998765321   


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                       ..++||+|++...-.......-.-..+++.+++.|+|||.+++...+
T Consensus       148 -~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s  194 (285)
T d2o07a1         148 -NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQGEC  194 (285)
T ss_dssp             -CSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             -CCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence             45789999987532111011112356899999999999999987654

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.89  E-value=1.3e-08  Score=82.51  Aligned_cols=119  Identities=15%  Similarity=0.069  Sum_probs=84.5

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...+.+||-+|.|.|..+..+++.. ..+++++|+++.+++.|++.+.....     .-...+++++.+|+..+-..   
T Consensus        87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~-----~~~d~rv~v~~~Da~~~l~~---  158 (295)
T d1inla_          87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC-----GFDDPRAEIVIANGAEYVRK---  158 (295)
T ss_dssp             SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG-----GGGCTTEEEEESCHHHHGGG---
T ss_pred             CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcc-----cccCCCcEEEhhhHHHHHhc---
Confidence            4567899999999999888887754 56799999999999999987652110     01146799999998765332   


Q ss_pred             CCCCCeeEEEEcccccccCCC-HHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          161 ADDAPFDICSCQFAMHYSWST-EARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~-~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                       .+++||+|++...-...... .-.-..+++.+++.|+|||.+++-..++
T Consensus       159 -~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp  207 (295)
T d1inla_         159 -FKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETEDP  207 (295)
T ss_dssp             -CSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             -CCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecCCh
Confidence             45789999986533211000 0012678999999999999999877653

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.89  E-value=4.6e-09  Score=79.65  Aligned_cols=111  Identities=13%  Similarity=0.104  Sum_probs=81.4

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      .+.+|||+.||+|.++.+.+..+...|+.||.+..+++..++++...+..       .....+.+.|+......  ....
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~-------~~~~~~~~~d~~~~l~~--~~~~  113 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCS-------SEQAEVINQSSLDFLKQ--PQNQ  113 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCC-------TTTEEEECSCHHHHTTS--CCSS
T ss_pred             ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccc-------ccccccccccccccccc--cccC
Confidence            67899999999999999999888889999999999999999988743221       22356667775443211  1134


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHh--ccCCCcEEEEEeCC
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSA--LLRPGGTFIGTMPD  208 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~--~L~~gG~li~~~~~  208 (262)
                      .+||+|++.--...     .....++..+..  +|+++|.+++..+.
T Consensus       114 ~~fDlIFlDPPY~~-----~~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         114 PHFDVVFLDPPFHF-----NLAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             CCEEEEEECCCSSS-----CHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             CcccEEEechhHhh-----hhHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            57999998776542     234556666654  79999999997654

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.88  E-value=2.5e-09  Score=83.45  Aligned_cols=109  Identities=23%  Similarity=0.250  Sum_probs=75.6

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhc--CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKA--KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      ++..+...++.+|||.|||+|.++..+.+.  ....++|+|+++.++..++                  ...++++|...
T Consensus        11 m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~------------------~~~~~~~~~~~   72 (223)
T d2ih2a1          11 MVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP------------------WAEGILADFLL   72 (223)
T ss_dssp             HHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT------------------TEEEEESCGGG
T ss_pred             HHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc------------------cceeeeeehhc
Confidence            444455678889999999999988877652  3446999999986543322                  25667888765


Q ss_pred             cccccccCCCCCeeEEEEcccccccCC-------------------------CHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWS-------------------------TEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~-------------------------~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      ..      ....||+|+++........                         .......++..+.+.|++||++++.+|+
T Consensus        73 ~~------~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~  146 (223)
T d2ih2a1          73 WE------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA  146 (223)
T ss_dssp             CC------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred             cc------cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEee
Confidence            54      3578999998764422100                         0001346778899999999999888774

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.87  E-value=4e-09  Score=83.06  Aligned_cols=73  Identities=11%  Similarity=0.207  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      .+..++......++++|||||||+|.++..+++.. .+++++|+++.+++..+++...           ..+++++++|+
T Consensus         9 i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~-----------~~n~~i~~~D~   76 (235)
T d1qama_           9 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD-----------HDNFQVLNKDI   76 (235)
T ss_dssp             HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT-----------CCSEEEECCCG
T ss_pred             HHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhc-----------ccchhhhhhhh
Confidence            35556666667789999999999999999998754 5899999999999999988753           35799999999


Q ss_pred             ccccc
Q 024797          152 YEVHL  156 (262)
Q Consensus       152 ~~~~~  156 (262)
                      ..+++
T Consensus        77 l~~~~   81 (235)
T d1qama_          77 LQFKF   81 (235)
T ss_dssp             GGCCC
T ss_pred             hhccc
Confidence            98876

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=3.5e-08  Score=75.83  Aligned_cols=100  Identities=14%  Similarity=0.091  Sum_probs=80.6

Q ss_pred             CCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ++.+|+|+|+|.|--+..++- .+..+++.+|.+..-+...+....+++..         ++++++..++++.      .
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~---------nv~v~~~R~E~~~------~  129 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE---------NIEPVQSRVEEFP------S  129 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS---------SEEEEECCTTTSC------C
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCc---------ceeeeccchhhhc------c
Confidence            567999999999988888765 45668999999999988888877654433         5999999998865      3


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      ..+||+|++..+-.        ...++.-+...++++|.+++.-
T Consensus       130 ~~~fD~V~sRA~~~--------~~~ll~~~~~~l~~~g~~~~~K  165 (207)
T d1jsxa_         130 EPPFDGVISRAFAS--------LNDMVSWCHHLPGEQGRFYALK  165 (207)
T ss_dssp             CSCEEEEECSCSSS--------HHHHHHHHTTSEEEEEEEEEEE
T ss_pred             ccccceehhhhhcC--------HHHHHHHHHHhcCCCcEEEEEC
Confidence            56899999876543        4568888999999999988754

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.80  E-value=9e-10  Score=87.31  Aligned_cols=87  Identities=16%  Similarity=0.190  Sum_probs=68.7

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +..++..+...++++|||||||+|.++..+++.. .+|++||+++.+++.+++++..           ..++.++++|+.
T Consensus        18 i~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~-~~v~aIE~D~~l~~~l~~~~~~-----------~~n~~ii~~D~l   85 (245)
T d1yuba_          18 LNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKL-----------NTRVTLIHQDIL   85 (245)
T ss_dssp             HHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTT-----------CSEEEECCSCCT
T ss_pred             HHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhc-CceeEeeecccchhhhhhhhhh-----------ccchhhhhhhhh
Confidence            4456666667788999999999999999998764 4899999999998888776541           356999999999


Q ss_pred             ccccccccCCCCCeeEEEEccccc
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMH  176 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~  176 (262)
                      ++++     +...++.|+.+...+
T Consensus        86 ~~~~-----~~~~~~~vv~NLPY~  104 (245)
T d1yuba_          86 QFQF-----PNKQRYKIVGNIPYH  104 (245)
T ss_dssp             TTTC-----CCSSEEEEEEECCSS
T ss_pred             cccc-----ccceeeeEeeeeehh
Confidence            8877     556667777666553

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.73  E-value=2.1e-08  Score=81.20  Aligned_cols=120  Identities=18%  Similarity=0.158  Sum_probs=85.9

Q ss_pred             ccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           82 ARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      ...+.+||-+|.|.|..+..+++. +..+++++|+++++++.|++.+....     ......+++++.+|+...-..   
T Consensus        78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~-----~~~~~~r~~i~~~Da~~~l~~---  149 (290)
T d1xj5a_          78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA-----IGYEDPRVNLVIGDGVAFLKN---  149 (290)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH-----GGGGSTTEEEEESCHHHHHHT---
T ss_pred             CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhh-----ccccCCCcEEEEccHHHHHhh---
Confidence            356679999999999999988875 44689999999999999999764211     011246799999998654321   


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCCh
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~  209 (262)
                      .++++||+|++...-.......-.-..+++.+++.|+|||.+++...+.
T Consensus       150 ~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~  198 (290)
T d1xj5a_         150 AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQAESL  198 (290)
T ss_dssp             SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECCCT
T ss_pred             ccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEecCCc
Confidence            1356899999865321110011113678999999999999999987654

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=1.2e-07  Score=79.33  Aligned_cols=125  Identities=15%  Similarity=0.106  Sum_probs=85.1

Q ss_pred             HHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           74 KSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        74 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      +.++..+...++.+|||+.||.|.++..+++ ..++|+|+|.++.+++.|+++....+         ..++.|+++++..
T Consensus       202 ~~v~~~~~~~~~~~vlDLycG~G~fsl~La~-~~~~V~gvE~~~~ai~~A~~na~~n~---------i~n~~~~~~~~~~  271 (358)
T d1uwva2         202 ARALEWLDVQPEDRVLDLFCGMGNFTLPLAT-QAASVVGVEGVPALVEKGQQNARLNG---------LQNVTFYHENLEE  271 (358)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTTTTHHHHHT-TSSEEEEEESCHHHHHHHHHHHHHTT---------CCSEEEEECCTTS
T ss_pred             HHHHHhhccCCCceEEEecccccccchhccc-cccEEEeccCcHHHHHHHHHhHHhcc---------cccceeeecchhh
Confidence            3444445566788999999999999998864 45689999999999999999877433         4469999999865


Q ss_pred             cccccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHHHHHHhh
Q 024797          154 VHLDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVIIKKLRE  218 (262)
Q Consensus       154 ~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~  218 (262)
                      ..... ......+|+|++.---.-+       ..++..+.+. +|.-+++++ .|+..+.+.+..
T Consensus       272 ~~~~~-~~~~~~~d~vilDPPR~G~-------~~~~~~l~~~-~~~~ivYVS-Cnp~TlaRDl~~  326 (358)
T d1uwva2         272 DVTKQ-PWAKNGFDKVLLDPARAGA-------AGVMQQIIKL-EPIRIVYVS-CNPATLARDSEA  326 (358)
T ss_dssp             CCSSS-GGGTTCCSEEEECCCTTCC-------HHHHHHHHHH-CCSEEEEEE-SCHHHHHHHHHH
T ss_pred             hhhhh-hhhhccCceEEeCCCCccH-------HHHHHHHHHc-CCCEEEEEe-CCHHHHHHHHHH
Confidence            42111 1134679999986533321       2345555543 566666665 567666655543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.64  E-value=9.9e-08  Score=81.63  Aligned_cols=134  Identities=18%  Similarity=0.195  Sum_probs=91.3

Q ss_pred             cCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc---C-----------CCeEEEEeCChhHHHHHHH
Q 024797           60 ASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---K-----------IGYYVGIDIAEGSIEDCRT  125 (262)
Q Consensus        60 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~-----------~~~v~gvD~s~~~~~~a~~  125 (262)
                      .+..+.++.+.+.   ++..+.+.++.+|+|.+||+|.++..+.+.   .           ...++|+|+++.+...|+.
T Consensus       141 ~G~f~TP~~Iv~~---mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~  217 (425)
T d2okca1         141 AGQYFTPRPLIQA---MVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASM  217 (425)
T ss_dssp             CGGGCCCHHHHHH---HHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHH
T ss_pred             chhhccchhhhHh---hheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHh
Confidence            3556667776554   444455667889999999999998876542   1           1248999999999999988


Q ss_pred             HhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccC-------------CCHHHHHHHHHHH
Q 024797          126 RYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSW-------------STEARARRALANV  192 (262)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~-------------~~~~~~~~~l~~~  192 (262)
                      ++.-.+..       .....+...|.....      +..+||+|+++--+....             ........++..+
T Consensus       218 n~~l~g~~-------~~~~~i~~~d~l~~~------~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~  284 (425)
T d2okca1         218 NLYLHGIG-------TDRSPIVCEDSLEKE------PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHM  284 (425)
T ss_dssp             HHHHTTCC-------SSCCSEEECCTTTSC------CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHH
T ss_pred             hhhhcCCc-------cccceeecCchhhhh------cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHH
Confidence            76532211       123456677765443      467899999986442210             1112235689999


Q ss_pred             HhccCCCcEEEEEeCCh
Q 024797          193 SALLRPGGTFIGTMPDA  209 (262)
Q Consensus       193 ~~~L~~gG~li~~~~~~  209 (262)
                      .+.|++||++++.+|+.
T Consensus       285 ~~~Lk~~G~~~iI~p~~  301 (425)
T d2okca1         285 MLMLKTGGRAAVVLPDN  301 (425)
T ss_dssp             HHHEEEEEEEEEEEEHH
T ss_pred             HHhcCCCCeEEEEechH
Confidence            99999999999888754

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.60  E-value=1.8e-07  Score=73.13  Aligned_cols=102  Identities=21%  Similarity=0.170  Sum_probs=67.1

Q ss_pred             CCCeEEEecCCCCcchHHHHh-----cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDK-----AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~-----~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ++.+|||+|++.|..+..++.     ...++++|+|+.+........              ...+++++++|..+....+
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~--------------~~~~I~~i~gDs~~~~~~~  145 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS--------------DMENITLHQGDCSDLTTFE  145 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG--------------GCTTEEEEECCSSCSGGGG
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc--------------cccceeeeecccccHHHHH
Confidence            577999999999976655542     246689999998754322211              1356999999976544322


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .. ....+|+|+.... |+.    +....-+ ++...|++||++++..
T Consensus       146 ~l-~~~~~dlIfID~~-H~~----~~v~~~~-~~~~lLk~GG~iIveD  186 (232)
T d2bm8a1         146 HL-REMAHPLIFIDNA-HAN----TFNIMKW-AVDHLLEEGDYFIIED  186 (232)
T ss_dssp             GG-SSSCSSEEEEESS-CSS----HHHHHHH-HHHHTCCTTCEEEECS
T ss_pred             HH-HhcCCCEEEEcCC-cch----HHHHHHH-HHhcccCcCCEEEEEc
Confidence            22 3456888888765 432    2222333 3568999999999864

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.60  E-value=1.6e-07  Score=76.92  Aligned_cols=115  Identities=19%  Similarity=0.255  Sum_probs=83.6

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +.+.++.+|||++||+|.=+..++.  ...+.++++|+++.-+...++++...+.         .++.....|...++. 
T Consensus       112 l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~---------~~i~~~~~d~~~~~~-  181 (313)
T d1ixka_         112 LDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV---------LNVILFHSSSLHIGE-  181 (313)
T ss_dssp             HCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC---------CSEEEESSCGGGGGG-
T ss_pred             ccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh---------hcccccccccccccc-
Confidence            4567899999999999998777765  3556899999999999998888774433         347777777766654 


Q ss_pred             cccCCCCCeeEEEEcc------cccccC-----CCH-------HHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          158 KVLADDAPFDICSCQF------AMHYSW-----STE-------ARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~------~l~~~~-----~~~-------~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                          ....||.|++..      ++..-.     ...       ..+.+++.++.+.|||||.+|-++.+
T Consensus       182 ----~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS  246 (313)
T d1ixka_         182 ----LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS  246 (313)
T ss_dssp             ----GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred             ----ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence                467899999743      121110     011       23467889999999999999888753

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=2e-07  Score=75.28  Aligned_cols=116  Identities=16%  Similarity=0.167  Sum_probs=80.3

Q ss_pred             HHhccCCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           79 QLYARRGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      .+.+.++.+|||+++|+|.-+..++.. ..+.++++|+++.-+...++++...+..         ++.....|.......
T Consensus        97 ~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~---------~~~~~~~~~~~~~~~  167 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK---------ATVKQGDGRYPSQWC  167 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC---------CEEEECCTTCTHHHH
T ss_pred             ccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc---------ceeeeccccccchhc
Confidence            345678999999999999988887763 4468999999999999999988754432         133333343322211


Q ss_pred             cccCCCCCeeEEEEcc------ccccc------CC------CHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQF------AMHYS------WS------TEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~------~l~~~------~~------~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                          ..+.||.|++..      ++..-      +.      -...+.++|.++.+.|+|||.|+-++.
T Consensus       168 ----~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC  231 (284)
T d1sqga2         168 ----GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC  231 (284)
T ss_dssp             ----TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred             ----ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence                357899999753      12111      00      012357789999999999999988875

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=1.5e-06  Score=69.55  Aligned_cols=88  Identities=22%  Similarity=0.354  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcc
Q 024797           72 WIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDC  151 (262)
Q Consensus        72 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~  151 (262)
                      .++.++......+++.|||||+|.|.++..+++.. .+++++++++.+++..++.+...        ....+++++.+|+
T Consensus         9 i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~-~~v~aiE~D~~l~~~L~~~~~~~--------~~~~~~~~i~~D~   79 (278)
T d1zq9a1           9 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKA-KKVVACELDPRLVAELHKRVQGT--------PVASKLQVLVGDV   79 (278)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTS--------TTGGGEEEEESCT
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcC-CcEEEEEEccchhHHHHHHHhhh--------ccccchhhhHHHH
Confidence            34556666666788999999999999999998765 58999999999999999887621        2235699999999


Q ss_pred             cccccccccCCCCCeeEEEEcccc
Q 024797          152 YEVHLDKVLADDAPFDICSCQFAM  175 (262)
Q Consensus       152 ~~~~~~~~~~~~~~fD~V~~~~~l  175 (262)
                      ...++       ..++.|+.+.-.
T Consensus        80 l~~~~-------~~~~~vV~NLPY   96 (278)
T d1zq9a1          80 LKTDL-------PFFDTCVANLPY   96 (278)
T ss_dssp             TTSCC-------CCCSEEEEECCG
T ss_pred             hhhhh-------hhhhhhhcchHH
Confidence            88764       234567666544

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.48  E-value=2.4e-07  Score=69.57  Aligned_cols=116  Identities=19%  Similarity=0.234  Sum_probs=78.4

Q ss_pred             cCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc--
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK--  158 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--  158 (262)
                      +++.+|||+||++|.++..+.+  ...+.++++|+.+.         .           ...++.++++|+.+.....  
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~-----------~i~~~~~~~~d~~~~~~~~~~   80 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------D-----------PIVGVDFLQGDFRDELVMKAL   80 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------C-----------CCTTEEEEESCTTSHHHHHHH
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------c-----------ccCCceEeecccccchhhhhh
Confidence            6888999999999999998765  35568999998761         1           1345889999987643211  


Q ss_pred             -ccCCCCCeeEEEEcccccccCC-------CHHHHHHHHHHHHhccCCCcEEEEEeCCh---HHHHHHHhh
Q 024797          159 -VLADDAPFDICSCQFAMHYSWS-------TEARARRALANVSALLRPGGTFIGTMPDA---NVIIKKLRE  218 (262)
Q Consensus       159 -~~~~~~~fD~V~~~~~l~~~~~-------~~~~~~~~l~~~~~~L~~gG~li~~~~~~---~~~~~~~~~  218 (262)
                       .....+++|+|++.++..-.-.       ...-....+.-+.++|++||.+++.+-+.   ..+...+..
T Consensus        81 ~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~  151 (180)
T d1ej0a_          81 LERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS  151 (180)
T ss_dssp             HHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred             hhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHh
Confidence             1114578999999886542100       11223456777889999999999987543   344444443

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.44  E-value=8.8e-07  Score=73.97  Aligned_cols=118  Identities=15%  Similarity=0.040  Sum_probs=84.1

Q ss_pred             cCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCcccccc------ccCCCCCeEEEeCcccccc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQR------RKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~------~~~~~~~v~~~~~d~~~~~  155 (262)
                      .++.+|||+.||+|..++.++. .+...|+..|+|+.+++.+++++...+..+..      .......+.+.+.|+..+.
T Consensus        44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            3678999999999999997765 45668999999999999999987633222110      0011223667777765543


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHHH
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANVI  212 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~  212 (262)
                      ..    ....||+|.+.- +       ..+..+++.+.+.++.||.|.++..|...+
T Consensus       124 ~~----~~~~fDvIDiDP-f-------Gs~~pfldsAi~a~~~~Gll~vTaTD~a~L  168 (375)
T d2dula1         124 AE----RHRYFHFIDLDP-F-------GSPMEFLDTALRSAKRRGILGVTATDGAPL  168 (375)
T ss_dssp             HH----STTCEEEEEECC-S-------SCCHHHHHHHHHHEEEEEEEEEEECCHHHH
T ss_pred             Hh----hcCcCCcccCCC-C-------CCcHHHHHHHHHHhccCCEEEEEecCchhh
Confidence            31    346799998765 1       123558888999999999999998876655

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.44  E-value=6.6e-07  Score=69.90  Aligned_cols=104  Identities=11%  Similarity=0.015  Sum_probs=78.7

Q ss_pred             CCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ...+|+|+|+|.|--+..++- .+..+++.+|.+..-+...+....++++.         ++.+++..++++.....  .
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~---------n~~i~~~R~E~~~~~~~--~  138 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE---------NTTFCHDRAETFGQRKD--V  138 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS---------SEEEEESCHHHHTTCTT--T
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCC---------CcEEEeehhhhcccccc--c
Confidence            467899999999988887764 46668999999999888877766644433         48888888876543100  2


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      .++||+|++..+-.        ...++.-+...+++||.+++.-
T Consensus       139 ~~~~D~v~sRAva~--------l~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         139 RESYDIVTARAVAR--------LSVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             TTCEEEEEEECCSC--------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             cccceEEEEhhhhC--------HHHHHHHHhhhcccCCEEEEEC
Confidence            36899999876553        4678888999999999988754

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.9e-06  Score=69.62  Aligned_cols=116  Identities=13%  Similarity=0.051  Sum_probs=78.5

Q ss_pred             HhccCCCeEEEecCCCCcchHHHHh--cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGKGGDLIKWDK--AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      +.+.++.+|||++||+|.-+..++.  ...+.++++|+++.-+...++++...+..         ++.+...|...+...
T Consensus        90 L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~---------~~~~~~~d~~~~~~~  160 (293)
T d2b9ea1          90 LDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVS---------CCELAEEDFLAVSPS  160 (293)
T ss_dssp             HCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC---------SEEEEECCGGGSCTT
T ss_pred             cCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCcc---------ceeeeehhhhhhccc
Confidence            4567899999999999998887765  35668999999999999999988765443         488888887765431


Q ss_pred             cccCCCCCeeEEEEccc------ccccC--------CC------HHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          158 KVLADDAPFDICSCQFA------MHYSW--------ST------EARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~------l~~~~--------~~------~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ..  ..+.||.|++..-      +....        ..      ...+..++..+. .|+|||.|+-++.
T Consensus       161 ~~--~~~~fD~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTC  227 (293)
T d2b9ea1         161 DP--RYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTC  227 (293)
T ss_dssp             CG--GGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEES
T ss_pred             cc--ccceeeEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeec
Confidence            10  1367999997531      11100        00      112234555555 4799999887775

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=3.5e-07  Score=72.35  Aligned_cols=72  Identities=10%  Similarity=0.111  Sum_probs=58.6

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCY  152 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  152 (262)
                      +..++..+...+++.|||||||.|.++..+++. ..+|+++|+++.+++..+++...           ..+++++.+|+.
T Consensus        10 ~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~-----------~~~~~ii~~D~l   77 (252)
T d1qyra_          10 IDSIVSAINPQKGQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFL-----------GPKLTIYQQDAM   77 (252)
T ss_dssp             HHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTT-----------GGGEEEECSCGG
T ss_pred             HHHHHHhcCCCCCCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhh-----------ccchhHHhhhhh
Confidence            445666666778999999999999999999865 45899999999999999875431           346999999998


Q ss_pred             cccc
Q 024797          153 EVHL  156 (262)
Q Consensus       153 ~~~~  156 (262)
                      .+++
T Consensus        78 ~~~~   81 (252)
T d1qyra_          78 TFNF   81 (252)
T ss_dssp             GCCH
T ss_pred             hhcc
Confidence            8765

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=9.1e-07  Score=77.49  Aligned_cols=139  Identities=17%  Similarity=0.199  Sum_probs=86.5

Q ss_pred             cCccccchhHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc---C----------------CCeEEEEeCChhHH
Q 024797           60 ASPIIHLKKLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA---K----------------IGYYVGIDIAEGSI  120 (262)
Q Consensus        60 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~----------------~~~v~gvD~s~~~~  120 (262)
                      .+..+.++.+...+   +..+.+.++.+|+|.+||+|.++....+.   .                ...++|+|+++.+.
T Consensus       143 ~GqfyTP~~Iv~~m---v~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~  219 (524)
T d2ar0a1         143 AGQYFTPRPLIKTI---IHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR  219 (524)
T ss_dssp             --CCCCCHHHHHHH---HHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred             cchhccccchhHhh---hhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHH
Confidence            46667777775554   44445667889999999999998765431   1                12589999999999


Q ss_pred             HHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEccccccc----------CCCHHHHHHHHH
Q 024797          121 EDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS----------WSTEARARRALA  190 (262)
Q Consensus       121 ~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~----------~~~~~~~~~~l~  190 (262)
                      ..|+.++.-.+...    .......+...+....+..    ...+||+|+++--+...          ......-..++.
T Consensus       220 ~la~~nl~l~~~~~----~i~~~~~~~~~~~l~~d~~----~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~  291 (524)
T d2ar0a1         220 RLALMNCLLHDIEG----NLDHGGAIRLGNTLGSDGE----NLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQ  291 (524)
T ss_dssp             HHHHHHHHTTTCCC----BGGGTBSEEESCTTSHHHH----TSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHH
T ss_pred             HHHHHHHHhhcccc----cccccchhhhhhhhhhccc----ccccceeEEecCCccccccccchhhhccccccccHHHHH
Confidence            99987765222110    0011122333333222111    34689999997644211          011122346899


Q ss_pred             HHHhccCCCcEEEEEeCCh
Q 024797          191 NVSALLRPGGTFIGTMPDA  209 (262)
Q Consensus       191 ~~~~~L~~gG~li~~~~~~  209 (262)
                      .+.+.|++||++.+.+|+.
T Consensus       292 ~~l~~Lk~gGr~aiIlP~~  310 (524)
T d2ar0a1         292 HIIETLHPGGRAAVVVPDN  310 (524)
T ss_dssp             HHHHHEEEEEEEEEEEEHH
T ss_pred             HHHHhccccCcEEEEEehH
Confidence            9999999999999988754

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=98.19  E-value=3.2e-06  Score=65.61  Aligned_cols=115  Identities=19%  Similarity=0.220  Sum_probs=66.9

Q ss_pred             HHHHHhccCCCeEEEecCCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCC-eEEEeCc-cc
Q 024797           76 VLVQLYARRGDVVLDLACGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFP-ARLICGD-CY  152 (262)
Q Consensus        76 ~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~-v~~~~~d-~~  152 (262)
                      +.......+..+|+|+|||+|..+..++... ...+.|+++--...+     .+-.      ......+ +.+...+ +.
T Consensus        58 ~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-----~P~~------~~~~~~ni~~~~~~~dv~  126 (257)
T d2p41a1          58 FVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-----EPIP------MSTYGWNLVRLQSGVDVF  126 (257)
T ss_dssp             HHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-----CCCC------CCSTTGGGEEEECSCCTT
T ss_pred             HHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-----CCcc------ccccccccccchhhhhHH
Confidence            4444456778899999999999999886543 335777776322100     0000      0001111 3333333 22


Q ss_pred             ccccccccCCCCCeeEEEEcccccccCCC--HHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          153 EVHLDKVLADDAPFDICSCQFAMHYSWST--EARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       153 ~~~~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      .+       ++...|+|+|..+-..--..  ......++.-+.++|+|||.+++.+-.
T Consensus       127 ~l-------~~~~~D~vlcDm~ess~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~  177 (257)
T d2p41a1         127 FI-------PPERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN  177 (257)
T ss_dssp             TS-------CCCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred             hc-------CCCcCCEEEeeCCCCCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence            21       46889999999764311000  112235778888999999999998643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.58  E-value=0.00033  Score=51.18  Aligned_cols=103  Identities=15%  Similarity=0.052  Sum_probs=65.2

Q ss_pred             HHHhccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797           78 VQLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (262)
Q Consensus        78 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (262)
                      .....+++++||-+|||. |..+..+++....+|+++|.+++-++.|++....              .. +..+......
T Consensus        20 ~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~--------------~~-~~~~~~~~~~   84 (170)
T d1e3ja2          20 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD--------------VT-LVVDPAKEEE   84 (170)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS--------------EE-EECCTTTSCH
T ss_pred             HHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc--------------EE-Eecccccccc
Confidence            444567899999999985 5566666665555899999999999999875431              11 2222111100


Q ss_pred             c---c-c-cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 D---K-V-LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~---~-~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .   . . ......+|+|+-.-.-          ...+..+.+.++++|++++.
T Consensus        85 ~~~~~~~~~~~g~g~D~vid~~g~----------~~~~~~a~~~~~~~G~iv~~  128 (170)
T d1e3ja2          85 SSIIERIRSAIGDLPNVTIDCSGN----------EKCITIGINITRTGGTLMLV  128 (170)
T ss_dssp             HHHHHHHHHHSSSCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             chhhhhhhcccccCCceeeecCCC----------hHHHHHHHHHHhcCCceEEE
Confidence            0   0 0 0013568998754322          24567788999999998865

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=0.00022  Score=57.98  Aligned_cols=59  Identities=17%  Similarity=0.145  Sum_probs=49.5

Q ss_pred             CCCeEEEecCCCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV  154 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~  154 (262)
                      .+.+|||||.|.|.++..++.. ...+++++|+++..++..++.+.            ..++.++.+|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~------------~~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE------------GSPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT------------TSSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc------------CCCcEEEeCchhhc
Confidence            4678999999999999999865 45689999999999999988765            44688899998754

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.39  E-value=0.00014  Score=56.57  Aligned_cols=87  Identities=9%  Similarity=-0.070  Sum_probs=59.1

Q ss_pred             CeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCC
Q 024797           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP  165 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  165 (262)
                      .+|||+-||.|..+..++..+ .+|+++|-++.+....+..+...............+++++++|..++-..    ....
T Consensus        90 ~~VlD~TaGlG~Da~vlA~~G-~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~----~~~~  164 (250)
T d2oyra1          90 PDVVDATAGLGRDAFVLASVG-CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD----ITPR  164 (250)
T ss_dssp             CCEEETTCTTCHHHHHHHHHT-CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT----CSSC
T ss_pred             CEEEECCCcccHHHHHHHhCC-CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhc----cCCC
Confidence            489999999999999987665 48999999998777666554321110000001123689999997665321    3467


Q ss_pred             eeEEEEcccccc
Q 024797          166 FDICSCQFAMHY  177 (262)
Q Consensus       166 fD~V~~~~~l~~  177 (262)
                      ||+|++.-.+.+
T Consensus       165 ~DvIYlDPMFp~  176 (250)
T d2oyra1         165 PQVVYLDPMFPH  176 (250)
T ss_dssp             CSEEEECCCCCC
T ss_pred             CCEEEECCCCcc
Confidence            999998876653

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.33  E-value=0.00039  Score=51.13  Aligned_cols=102  Identities=13%  Similarity=0.057  Sum_probs=63.9

Q ss_pred             HHhccCCCeEEEecCCC-CcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797           79 QLYARRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (262)
                      .....++++||-+|||. |..+..+++ .+...++.+|.++.-++.+++.-.               .+++..+-.+...
T Consensus        23 ~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga---------------~~~i~~~~~~~~~   87 (174)
T d1f8fa2          23 ALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA---------------THVINSKTQDPVA   87 (174)
T ss_dssp             TTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC---------------SEEEETTTSCHHH
T ss_pred             hhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC---------------eEEEeCCCcCHHH
Confidence            34567899999999986 334444544 356678899999999999987533               2233222111110


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .-....++.+|+|+-.-.-          ...++.+.+.++|+|.+++.
T Consensus        88 ~i~~~t~gg~D~vid~~G~----------~~~~~~~~~~~~~~G~i~~~  126 (174)
T d1f8fa2          88 AIKEITDGGVNFALESTGS----------PEILKQGVDALGILGKIAVV  126 (174)
T ss_dssp             HHHHHTTSCEEEEEECSCC----------HHHHHHHHHTEEEEEEEEEC
T ss_pred             HHHHHcCCCCcEEEEcCCc----------HHHHHHHHhcccCceEEEEE
Confidence            0000034679999854322          23567788999999998764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.31  E-value=0.0003  Score=51.86  Aligned_cols=102  Identities=15%  Similarity=0.123  Sum_probs=65.2

Q ss_pred             HHHhccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           78 VQLYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        78 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ......++++||-+|||. |..+..+++. +..+|+++|.+++-++.+++.-.               ..++.-.-.+..
T Consensus        21 ~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa---------------~~~i~~~~~~~~   85 (174)
T d1jqba2          21 ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA---------------TDILNYKNGHIE   85 (174)
T ss_dssp             HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC---------------SEEECGGGSCHH
T ss_pred             HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc---------------cccccccchhHH
Confidence            445578999999999987 6667777664 34479999999999999987532               122211111110


Q ss_pred             --cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 --LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 --~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        ..+.. ....+|+|+-.-.-.          ..+....+.++|+|.+++.
T Consensus        86 ~~v~~~t-~g~G~D~vid~~g~~----------~~~~~a~~~~~~~G~iv~~  126 (174)
T d1jqba2          86 DQVMKLT-NGKGVDRVIMAGGGS----------ETLSQAVKMVKPGGIISNI  126 (174)
T ss_dssp             HHHHHHT-TTSCEEEEEECSSCT----------THHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHHh-hccCcceEEEccCCH----------HHHHHHHHHHhcCCEEEEE
Confidence              00111 234599988544332          2457778999999999874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.27  E-value=0.00027  Score=51.79  Aligned_cols=103  Identities=14%  Similarity=0.020  Sum_probs=64.1

Q ss_pred             HHHhccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           78 VQLYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        78 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ......++++||=+|||+ |.....+++. +..+|+++|.+++-++.|++.-.               -.++..+-.+..
T Consensus        20 ~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga---------------~~~~~~~~~~~~   84 (171)
T d1pl8a2          20 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA---------------DLVLQISKESPQ   84 (171)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC---------------SEEEECSSCCHH
T ss_pred             HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCC---------------cccccccccccc
Confidence            445567899999999987 4444445543 45579999999999999987532               111221111110


Q ss_pred             -ccc-c-cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 -LDK-V-LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 -~~~-~-~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                       ... . ......+|+|+-.-.-          ...+....+.+++||++++.
T Consensus        85 ~~~~~~~~~~g~g~Dvvid~~G~----------~~~~~~a~~~~~~gG~iv~~  127 (171)
T d1pl8a2          85 EIARKVEGQLGCKPEVTIECTGA----------EASIQAGIYATRSGGTLVLV  127 (171)
T ss_dssp             HHHHHHHHHHTSCCSEEEECSCC----------HHHHHHHHHHSCTTCEEEEC
T ss_pred             cccccccccCCCCceEEEeccCC----------chhHHHHHHHhcCCCEEEEE
Confidence             000 0 0013568998864432          23577889999999998774

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.23  E-value=0.00016  Score=53.03  Aligned_cols=101  Identities=15%  Similarity=-0.012  Sum_probs=63.1

Q ss_pred             HHHhccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEe-Ccccccc
Q 024797           78 VQLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLIC-GDCYEVH  155 (262)
Q Consensus        78 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~-~d~~~~~  155 (262)
                      ......++++||-+|+|. |..+..+++....+++++|.+++.++.+++.-.               -.++. .+..+..
T Consensus        21 ~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa---------------~~~i~~~~~~~~~   85 (168)
T d1piwa2          21 VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGA---------------DHYIATLEEGDWG   85 (168)
T ss_dssp             HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTC---------------SEEEEGGGTSCHH
T ss_pred             HHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCC---------------cEEeeccchHHHH
Confidence            344567999999999984 656666665444489999999999999987532               11221 1111111


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .  .  ..+.+|+|+..-.-.+-        ..+....+.|+++|++++.
T Consensus        86 ~--~--~~~~~d~vi~~~~~~~~--------~~~~~~~~~l~~~G~iv~~  123 (168)
T d1piwa2          86 E--K--YFDTFDLIVVCASSLTD--------IDFNIMPKAMKVGGRIVSI  123 (168)
T ss_dssp             H--H--SCSCEEEEEECCSCSTT--------CCTTTGGGGEEEEEEEEEC
T ss_pred             H--h--hhcccceEEEEecCCcc--------chHHHHHHHhhccceEEEe
Confidence            0  0  24679988864322210        0134578899999998764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.21  E-value=0.00023  Score=51.90  Aligned_cols=102  Identities=18%  Similarity=0.108  Sum_probs=61.2

Q ss_pred             HHHhccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797           78 VQLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (262)
Q Consensus        78 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (262)
                      ......++++||-+|||. |.....+++....+|+++|.+++-++.+++.-.               ..++...-.+...
T Consensus        21 ~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga---------------~~~i~~~~~~~~~   85 (166)
T d1llua2          21 KQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA---------------SLTVNARQEDPVE   85 (166)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC---------------SEEEETTTSCHHH
T ss_pred             HHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc---------------cccccccchhHHH
Confidence            344568899999999986 555556666544689999999999999887532               1222222111100


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .-.....+.++.|++...           ...+....+.|+++|++++.
T Consensus        86 ~~~~~~~g~~~~i~~~~~-----------~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          86 AIQRDIGGAHGVLVTAVS-----------NSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             HHHHHHSSEEEEEECCSC-----------HHHHHHHHTTEEEEEEEEEC
T ss_pred             HHHHhhcCCccccccccc-----------chHHHHHHHHhcCCcEEEEE
Confidence            000001233444443221           13467788999999998763

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.16  E-value=0.00046  Score=53.64  Aligned_cols=49  Identities=20%  Similarity=0.255  Sum_probs=40.2

Q ss_pred             HHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhc
Q 024797           79 QLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      .....+++.|||.-||+|..+.... ....+.+|+|++++-++.|++++.
T Consensus       207 ~~~s~~gd~VlDpF~GSGTT~~aa~-~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         207 RASSNPNDLVLDCFMGSGTTAIVAK-KLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHCCTTCEEEESSCTTCHHHHHHH-HTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             HHhCCCCCEEEECCCCchHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHc
Confidence            3346789999999999997766554 344589999999999999999875

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.11  E-value=0.00045  Score=55.45  Aligned_cols=55  Identities=9%  Similarity=0.199  Sum_probs=43.1

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhcc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG  129 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~  129 (262)
                      +++++. ...++++.|||.-||+|..+..... ...+++|+|++++.++.|++++.+
T Consensus       240 ~~rlI~-~~s~~gdiVlDpF~GSGTT~~AA~~-lgR~~Ig~El~~~y~~~a~~Rl~~  294 (320)
T d1booa_         240 PEFFIR-MLTEPDDLVVDIFGGSNTTGLVAER-ESRKWISFEMKPEYVAASAFRFLD  294 (320)
T ss_dssp             HHHHHH-HHCCTTCEEEETTCTTCHHHHHHHH-TTCEEEEEESCHHHHHHHHGGGSC
T ss_pred             HHHhhh-hcccCCCEEEecCCCCcHHHHHHHH-cCCcEEEEeCCHHHHHHHHHHHHh
Confidence            344443 3467899999999999977766544 445899999999999999999874

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.96  E-value=0.002  Score=46.96  Aligned_cols=99  Identities=12%  Similarity=0.030  Sum_probs=62.6

Q ss_pred             ccCCCeEEEecCCCC-cchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc
Q 024797           82 ARRGDVVLDLACGKG-GDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV  159 (262)
Q Consensus        82 ~~~~~~vLDiGcG~G-~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  159 (262)
                      ..++++||-+|+|.. .....+++ .+...++++|.+++-++.+++...               ..++..+-.......-
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga---------------~~~i~~~~~~~~~~~~   94 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA---------------DHVVDARRDPVKQVME   94 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC---------------SEEEETTSCHHHHHHH
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc---------------ceeecCcccHHHHHHH
Confidence            468899999999873 34445554 355689999999999998887543               2233222111110000


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ......+|+|+-...-          ...+....+.|++||++++.
T Consensus        95 ~~~~~g~d~vid~~g~----------~~~~~~a~~~l~~~G~iv~~  130 (172)
T d1h2ba2          95 LTRGRGVNVAMDFVGS----------QATVDYTPYLLGRMGRLIIV  130 (172)
T ss_dssp             HTTTCCEEEEEESSCC----------HHHHHHGGGGEEEEEEEEEC
T ss_pred             hhCCCCceEEEEecCc----------chHHHHHHHHHhCCCEEEEE
Confidence            0123569998854433          23567789999999998864

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=96.93  E-value=0.0013  Score=53.86  Aligned_cols=46  Identities=11%  Similarity=0.163  Sum_probs=38.3

Q ss_pred             CCCCCeeEEEEcccccccCC-----------------------------CHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          161 ADDAPFDICSCQFAMHYSWS-----------------------------TEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~-----------------------------~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      +|+++.|++++..++||+-.                             ...|...+|+.-.+=|+|||++++++
T Consensus       135 fP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~  209 (359)
T d1m6ex_         135 FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI  209 (359)
T ss_dssp             SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred             CCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence            48899999999999998621                             13477889999999999999999876

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.92  E-value=0.0012  Score=48.76  Aligned_cols=99  Identities=16%  Similarity=0.061  Sum_probs=61.7

Q ss_pred             hccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeC---cccccc
Q 024797           81 YARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICG---DCYEVH  155 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~---d~~~~~  155 (262)
                      ...++++||-+|||. |.....+++. +..+|+++|.+++.++.+++.-.               -.++..   +..+..
T Consensus        25 ~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa---------------~~vi~~~~~~~~~~~   89 (182)
T d1vj0a2          25 ESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA---------------DLTLNRRETSVEERR   89 (182)
T ss_dssp             SCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC---------------SEEEETTTSCHHHHH
T ss_pred             CCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccc---------------eEEEeccccchHHHH
Confidence            346889999999985 6566666664 44479999999999999976432               111111   111100


Q ss_pred             --cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 --LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 --~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        ..+. .....+|+|+-.-.-          ...++...+.|++||++++.
T Consensus        90 ~~i~~~-~~~~g~Dvvid~vG~----------~~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2          90 KAIMDI-THGRGADFILEATGD----------SRALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             HHHHHH-TTTSCEEEEEECSSC----------TTHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHh-hCCCCceEEeecCCc----------hhHHHHHHHHhcCCCEEEEE
Confidence              0000 123469999854322          12457788999999998654

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.0023  Score=46.42  Aligned_cols=99  Identities=20%  Similarity=0.129  Sum_probs=63.5

Q ss_pred             HHHhccCCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc
Q 024797           78 VQLYARRGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL  156 (262)
Q Consensus        78 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  156 (262)
                      ......++++||=+|||. |.+...+++....+++++|.+++-++.+++.-.               ..++...-.....
T Consensus        24 ~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa---------------d~~i~~~~~~~~~   88 (168)
T d1uufa2          24 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA---------------DEVVNSRNADEMA   88 (168)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC---------------SEEEETTCHHHHH
T ss_pred             HHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCC---------------cEEEECchhhHHH
Confidence            444578999999999976 556666666544477889999988888876533               1222222111111


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                          .....+|+++-.-.-..          .+....+.++++|++++.
T Consensus        89 ----~~~~~~D~vid~~g~~~----------~~~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2          89 ----AHLKSFDFILNTVAAPH----------NLDDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             ----TTTTCEEEEEECCSSCC----------CHHHHHTTEEEEEEEEEC
T ss_pred             ----HhcCCCceeeeeeecch----------hHHHHHHHHhcCCEEEEe
Confidence                12357999886543321          245677899999998774

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.89  E-value=0.00055  Score=51.34  Aligned_cols=111  Identities=10%  Similarity=0.020  Sum_probs=67.7

Q ss_pred             HHHhccCCCeEEEecCCC-CcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           78 VQLYARRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        78 ~~~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      .....+++++||-+|||. |..+..+++ .+..+|+++|.+++-++.|++.-.               ..++...-.++.
T Consensus        19 ~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga---------------~~~~~~~~~~~~   83 (195)
T d1kola2          19 VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF---------------EIADLSLDTPLH   83 (195)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC---------------EEEETTSSSCHH
T ss_pred             HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc---------------cEEEeCCCcCHH
Confidence            345568999999999998 545555554 456689999999999999987533               111111101110


Q ss_pred             --cccccCCCCCeeEEEEccccc------ccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          156 --LDKVLADDAPFDICSCQFAMH------YSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       156 --~~~~~~~~~~fD~V~~~~~l~------~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                        .... .....+|+++-.....      +.. ........++.+.+.++|||.+++.
T Consensus        84 ~~i~~~-t~g~g~D~vid~vG~~~~~~~~~~~-~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          84 EQIAAL-LGEPEVDCAVDAVGFEARGHGHEGA-KHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             HHHHHH-HSSSCEEEEEECCCTTCBCSSTTGG-GSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             HHHHHH-hCCCCcEEEEECccccccCCcccce-eecCcHHHHHHHHHHHhcCCEEEEe
Confidence              0000 0245689998543211      100 0011245789999999999998765

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.84  E-value=0.0011  Score=52.09  Aligned_cols=55  Identities=18%  Similarity=0.077  Sum_probs=43.1

Q ss_pred             HHHHHHHHhccCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhcc
Q 024797           73 IKSVLVQLYARRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNG  129 (262)
Q Consensus        73 ~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~  129 (262)
                      +..++. ....+++.|||.-||+|..+...... ..+++|+|++++.++.|++++..
T Consensus       197 ~~~~I~-~~s~~gdiVLDpF~GSGTT~~Aa~~l-gR~~ig~El~~~y~~~a~~Ri~~  251 (279)
T d1eg2a_         197 IERLVR-ALSHPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTF  251 (279)
T ss_dssp             HHHHHH-HHSCTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHH
T ss_pred             HHHHHH-hhcCCCCEEEecCCCCcHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHH
Confidence            333433 34679999999999999777665444 34899999999999999999873

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.83  E-value=0.00094  Score=49.04  Aligned_cols=100  Identities=13%  Similarity=0.019  Sum_probs=64.2

Q ss_pred             HhccCCCeEEEecCCC-CcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--
Q 024797           80 LYARRGDVVLDLACGK-GGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--  155 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~-G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--  155 (262)
                      ....++++||=+|||. |..+..+++. +...|+.+|.+++-++.|++.-.               ..++...-.+..  
T Consensus        24 a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga---------------~~~i~~~~~~~~~~   88 (174)
T d1e3ia2          24 AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA---------------TDCLNPRELDKPVQ   88 (174)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC---------------SEEECGGGCSSCHH
T ss_pred             hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC---------------CcccCCccchhhhh
Confidence            3467899999999998 6666666663 55579999999999999987533               112211100100  


Q ss_pred             -cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCC-cEEEEE
Q 024797          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPG-GTFIGT  205 (262)
Q Consensus       156 -~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~g-G~li~~  205 (262)
                       ..... ..+.+|+|+-.-..          ...+....+.+++| |.+++.
T Consensus        89 ~~~~~~-~~~G~d~vie~~G~----------~~~~~~a~~~~~~g~G~~v~v  129 (174)
T d1e3ia2          89 DVITEL-TAGGVDYSLDCAGT----------AQTLKAAVDCTVLGWGSCTVV  129 (174)
T ss_dssp             HHHHHH-HTSCBSEEEESSCC----------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             hhHhhh-hcCCCcEEEEeccc----------chHHHHHHHHhhcCCeEEEec
Confidence             00000 24578999754322          34678889999996 898764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.78  E-value=0.00097  Score=48.34  Aligned_cols=50  Identities=24%  Similarity=0.205  Sum_probs=36.9

Q ss_pred             HHHHhccCCCeEEEecCCCCc-chHHHHhcCCCeEEEEeCChhHHHHHHHH
Q 024797           77 LVQLYARRGDVVLDLACGKGG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTR  126 (262)
Q Consensus        77 l~~~~~~~~~~vLDiGcG~G~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~  126 (262)
                      +......++++||=.|||+-. ....+++....+|+++|.+++-++.+++.
T Consensus        20 l~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          20 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             HHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhc
Confidence            334457889999999998743 34444455555899999999999988774

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=96.73  E-value=0.028  Score=44.48  Aligned_cols=117  Identities=11%  Similarity=-0.043  Sum_probs=75.6

Q ss_pred             cCCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccc---
Q 024797           83 RRGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKV---  159 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~---  159 (262)
                      .....|+.+|||-=.-...+-......++=+|. +++++.-++.+.+.+..      ...+...+..|+.+-....+   
T Consensus        88 ~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~------~~~~~~~v~~Dl~~~~~~~L~~~  160 (297)
T d2uyoa1          88 DGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVT------PTADRREVPIDLRQDWPPALRSA  160 (297)
T ss_dssp             TTCCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCC------CSSEEEEEECCTTSCHHHHHHHT
T ss_pred             hCCCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCC------CCceEEEecccccchHHHHHHhc
Confidence            334567779998743333331123335778885 77887777776543221      12346677777764211111   


Q ss_pred             cCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          160 LADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      -+....--++++-+++.|+  +.+...++++.+.+...||+.+++...+
T Consensus       161 g~d~~~ptl~i~EGvl~YL--~~~~~~~ll~~i~~~~~~GS~l~~d~~~  207 (297)
T d2uyoa1         161 GFDPSARTAWLAEGLLMYL--PATAQDGLFTEIGGLSAVGSRIAVETSP  207 (297)
T ss_dssp             TCCTTSCEEEEECSCGGGS--CHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             CCCCCCCEEEEEccccccC--CHHHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            1123445677788889998  8899999999999999999999998643

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.72  E-value=0.0043  Score=47.98  Aligned_cols=114  Identities=12%  Similarity=0.091  Sum_probs=72.0

Q ss_pred             CCCeEEEecCCCCcchHHHHhcC-----------------------------------------CCeEEEEeCChhHHHH
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAK-----------------------------------------IGYYVGIDIAEGSIED  122 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~-----------------------------------------~~~v~gvD~s~~~~~~  122 (262)
                      .+..++|..||+|.+.++.+--.                                         ...++|.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            45579999999999877653210                                         0124577777777777


Q ss_pred             HH---HHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEEcccccccCC-----CHHHHHHHHHHHHh
Q 024797          123 CR---TRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYSWS-----TEARARRALANVSA  194 (262)
Q Consensus       123 a~---~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~-----~~~~~~~~l~~~~~  194 (262)
                      |+   +++.        ..++...+.+.+.|+++........+....++|+++--.-.-+.     ..+....++..+.+
T Consensus       130 A~~~r~n~~--------~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~  201 (249)
T d1o9ga_         130 ARRLRERLT--------AEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLAS  201 (249)
T ss_dssp             HHHHHHHHH--------HTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--------HcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHc
Confidence            74   3333        23556678999999865432111113456789999863322221     34567888888999


Q ss_pred             ccCCCcEEEEE
Q 024797          195 LLRPGGTFIGT  205 (262)
Q Consensus       195 ~L~~gG~li~~  205 (262)
                      ++.....++++
T Consensus       202 ~~p~~s~~~it  212 (249)
T d1o9ga_         202 ALPAHAVIAVT  212 (249)
T ss_dssp             HSCTTCEEEEE
T ss_pred             cCCCCcEEEEe
Confidence            99766666665

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.57  E-value=0.011  Score=46.94  Aligned_cols=103  Identities=14%  Similarity=0.069  Sum_probs=68.5

Q ss_pred             CeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCC
Q 024797           86 DVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAP  165 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~  165 (262)
                      .+|||+-||.|.+...+...+...+.++|+++.+++..+.+..               -..+++|+.++...    .-..
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~---------------~~~~~~Di~~~~~~----~~~~   61 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS---------------AKLIKGDISKISSD----EFPK   61 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC---------------SEEEESCTTTSCGG----GSCC
T ss_pred             CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC---------------CCCccCChhhCCHh----Hccc
Confidence            3699999999998887766677668899999999988887765               45678998887643    2246


Q ss_pred             eeEEEEccccccc--------CCCHH-HHHHHHHHHHhccCCCcEEEEEeC
Q 024797          166 FDICSCQFAMHYS--------WSTEA-RARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       166 fD~V~~~~~l~~~--------~~~~~-~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +|+++...-.+-+        ..+.. ..--.+-++.+.++|.-.++=.++
T Consensus        62 ~dll~~g~PCq~fS~ag~~~g~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~  112 (324)
T d1dcta_          62 CDGIIGGPPCQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIFFLAENVK  112 (324)
T ss_dssp             CSEEEECCCCTTTSSSSCCCCSSSHHHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             ccEEeecccccccccccccccccccccchHHHHHHHHHhhCCceeeccccc
Confidence            8999976533322        11221 121223345566788655554454

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.46  E-value=0.006  Score=44.45  Aligned_cols=50  Identities=14%  Similarity=0.068  Sum_probs=37.5

Q ss_pred             HHhccCCCeEEEecCCCCc-chHHHHh-cCCCeEEEEeCChhHHHHHHHHhc
Q 024797           79 QLYARRGDVVLDLACGKGG-DLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        79 ~~~~~~~~~vLDiGcG~G~-~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      ....+++++||-+|||... ....+++ .+..+|+++|.+++-++.|++.-.
T Consensus        22 ~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa   73 (174)
T d1p0fa2          22 TAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA   73 (174)
T ss_dssp             TTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             hhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCC
Confidence            3456799999999998743 3344444 456689999999999999987543

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.41  E-value=0.0026  Score=46.60  Aligned_cols=49  Identities=20%  Similarity=0.213  Sum_probs=37.5

Q ss_pred             HhccCCCeEEEecCCCCc-chHHHHh-cCCCeEEEEeCChhHHHHHHHHhc
Q 024797           80 LYARRGDVVLDLACGKGG-DLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~-~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      ...+++++||=+|||... ....+++ .+..+|+++|.+++-++.|++.-.
T Consensus        25 ~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA   75 (176)
T d1d1ta2          25 GKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA   75 (176)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC
T ss_pred             hCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC
Confidence            346789999999998733 3444444 355689999999999999998755

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.38  E-value=0.0036  Score=45.37  Aligned_cols=104  Identities=13%  Similarity=0.167  Sum_probs=64.1

Q ss_pred             HHHHhccCCCeEEEecCCC--CcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccc
Q 024797           77 LVQLYARRGDVVLDLACGK--GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYE  153 (262)
Q Consensus        77 l~~~~~~~~~~vLDiGcG~--G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  153 (262)
                      +......++++||=+||+.  |..+..+++ .+...|+++|.+++-++.+++.-.               -.++..+-.+
T Consensus        20 l~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga---------------~~~i~~~~~~   84 (170)
T d1jvba2          20 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA---------------DYVINASMQD   84 (170)
T ss_dssp             HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC---------------SEEEETTTSC
T ss_pred             HHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC---------------ceeeccCCcC
Confidence            3445567899999999743  444444544 355689999999999999887532               1222222111


Q ss_pred             cccc-cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          154 VHLD-KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       154 ~~~~-~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .... ......+.||+|+....-          ...++...+.++|||.+++.
T Consensus        85 ~~~~~~~~~~~~~~d~vid~~g~----------~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          85 PLAEIRRITESKGVDAVIDLNNS----------EKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             HHHHHHHHTTTSCEEEEEESCCC----------HHHHTTGGGGEEEEEEEEEC
T ss_pred             HHHHHHHHhhcccchhhhccccc----------chHHHhhhhhcccCCEEEEe
Confidence            1100 000124569999865432          23556678999999998764

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0028  Score=46.19  Aligned_cols=97  Identities=20%  Similarity=0.133  Sum_probs=61.3

Q ss_pred             hccCCCeEEEecC-C-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           81 YARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        81 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      .+.++++||-.|+ | .|..+..+++....++++++.+++..+.+++.-.               -.++  |..+..+.+
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga---------------~~vi--~~~~~~~~~   87 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA---------------HEVF--NHREVNYID   87 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---------------SEEE--ETTSTTHHH
T ss_pred             CCCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCc---------------cccc--ccccccHHH
Confidence            4568999999997 3 3556666666555589999989988888876422               1122  111111100


Q ss_pred             ---ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          159 ---VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       159 ---~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                         .......+|+|+....           ...+....+.|+|+|.++..
T Consensus        88 ~i~~~t~~~g~d~v~d~~g-----------~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          88 KIKKYVGEKGIDIIIEMLA-----------NVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             HHHHHHCTTCEEEEEESCH-----------HHHHHHHHHHEEEEEEEEEC
T ss_pred             HhhhhhccCCceEEeeccc-----------HHHHHHHHhccCCCCEEEEE
Confidence               0013567999986431           13567788999999998864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.02  E-value=0.034  Score=38.11  Aligned_cols=98  Identities=14%  Similarity=0.083  Sum_probs=59.6

Q ss_pred             eEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           87 VVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        87 ~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      +|+=+|+|  .++..+++   .....|+.+|.+++.++.+++...               +.++.+|..+....... .-
T Consensus         2 ~IvI~G~G--~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~---------------~~vi~Gd~~~~~~l~~~-~i   63 (132)
T d1lssa_           2 YIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEID---------------ALVINGDCTKIKTLEDA-GI   63 (132)
T ss_dssp             EEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCS---------------SEEEESCTTSHHHHHHT-TT
T ss_pred             EEEEECCC--HHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhh---------------hhhccCcccchhhhhhc-Ch
Confidence            57777775  45554443   344479999999999988876543               67889998775542221 23


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      ...|.+++...      + +........+.+.+.+. .++..+.+.+
T Consensus        64 ~~a~~vv~~t~------~-d~~N~~~~~~~k~~~~~-~iI~~~~~~~  102 (132)
T d1lssa_          64 EDADMYIAVTG------K-EEVNLMSSLLAKSYGIN-KTIARISEIE  102 (132)
T ss_dssp             TTCSEEEECCS------C-HHHHHHHHHHHHHTTCC-CEEEECSSTT
T ss_pred             hhhhhhcccCC------c-HHHHHHHHHHHHHcCCc-eEEEEecCHH
Confidence            56788876321      1 22333445566667776 4444455443

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.62  E-value=0.012  Score=46.99  Aligned_cols=70  Identities=19%  Similarity=0.166  Sum_probs=53.6

Q ss_pred             CCCeEEEecCCCCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           84 RGDVVLDLACGKGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      .+.+|||+-||.|.+...+...+...+.++|+++.+++..+.++..                ..++|+.++...    .-
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~----------------~~~~Di~~~~~~----~~   69 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE----------------KPEGDITQVNEK----TI   69 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC----------------CCBSCGGGSCGG----GS
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC----------------CCcCchhcCchh----hc
Confidence            5689999999999998888666776688999999999999888752                125777766542    22


Q ss_pred             CCeeEEEEcc
Q 024797          164 APFDICSCQF  173 (262)
Q Consensus       164 ~~fD~V~~~~  173 (262)
                      ..+|+++...
T Consensus        70 ~~~Dll~ggp   79 (327)
T d2c7pa1          70 PDHDILCAGF   79 (327)
T ss_dssp             CCCSEEEEEC
T ss_pred             ceeeeeeccc
Confidence            4689999765

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.37  E-value=0.071  Score=38.03  Aligned_cols=91  Identities=20%  Similarity=0.090  Sum_probs=57.0

Q ss_pred             eEEEecCCC-Cc-chHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           87 VVLDLACGK-GG-DLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        87 ~vLDiGcG~-G~-~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      +|+=+|||. |. ++..+.+.+ ..+|+|+|.+++.++.+++...               +.....+....       ..
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~---------------~~~~~~~~~~~-------~~   60 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI---------------IDEGTTSIAKV-------ED   60 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS---------------CSEEESCGGGG-------GG
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc---------------chhhhhhhhhh-------hc
Confidence            578899985 33 233333333 3479999999999999987532               21122222221       13


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      ...|+|++.-       ++.....++.++...++++..+ +.+.
T Consensus        61 ~~~dlIila~-------p~~~~~~vl~~l~~~~~~~~ii-~d~~   96 (171)
T d2g5ca2          61 FSPDFVMLSS-------PVRTFREIAKKLSYILSEDATV-TDQG   96 (171)
T ss_dssp             TCCSEEEECS-------CHHHHHHHHHHHHHHSCTTCEE-EECC
T ss_pred             cccccccccC-------Cchhhhhhhhhhhccccccccc-cccc
Confidence            4579988644       4466788899999999877554 4443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=95.28  E-value=0.065  Score=38.09  Aligned_cols=86  Identities=13%  Similarity=0.004  Sum_probs=52.9

Q ss_pred             eEEEecCCC-Cc-chHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           87 VVLDLACGK-GG-DLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        87 ~vLDiGcG~-G~-~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      +|.=||+|. |. ++..+. ...-+|+++|.+++.++.+++.-.               +.....+...         -.
T Consensus         2 kI~iIG~G~mG~~lA~~l~-~~g~~V~~~d~~~~~~~~a~~~~~---------------~~~~~~~~~~---------~~   56 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLR-RRGHYLIGVSRQQSTCEKAVERQL---------------VDEAGQDLSL---------LQ   56 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHTTS---------------CSEEESCGGG---------GT
T ss_pred             EEEEEeecHHHHHHHHHHH-HCCCEEEEEECCchHHHHHHHhhc---------------cceeeeeccc---------cc
Confidence            567788874 32 333333 333479999999998888776421               1111222211         24


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      ..|+|+..-       +......+++++...|+++-.++-
T Consensus        57 ~~DiIilav-------p~~~~~~vl~~l~~~l~~~~iv~~   89 (165)
T d2f1ka2          57 TAKIIFLCT-------PIQLILPTLEKLIPHLSPTAIVTD   89 (165)
T ss_dssp             TCSEEEECS-------CHHHHHHHHHHHGGGSCTTCEEEE
T ss_pred             ccccccccC-------cHhhhhhhhhhhhhhcccccceee
Confidence            569887533       346678899999988888775543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.18  E-value=0.048  Score=39.17  Aligned_cols=101  Identities=14%  Similarity=0.087  Sum_probs=61.0

Q ss_pred             HhccCCCeEEEecCCC-CcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc
Q 024797           80 LYARRGDVVLDLACGK-GGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD  157 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~-G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~  157 (262)
                      ...+++++||=.|||. |..+..+++ .....|+++|.+++-++.+++.-.               ..++..+-......
T Consensus        24 ~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa---------------~~~i~~~~~~~~~~   88 (176)
T d2fzwa2          24 AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA---------------TECINPQDFSKPIQ   88 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC---------------SEEECGGGCSSCHH
T ss_pred             hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC---------------cEEEeCCchhhHHH
Confidence            4568999999999984 223333444 356689999999999999987543               11221110000000


Q ss_pred             c--ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          158 K--VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       158 ~--~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .  .....+.+|+|+-.-.-          ...++.+...+++||.+++.
T Consensus        89 ~~~~~~~~~g~D~vid~~G~----------~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          89 EVLIEMTDGGVDYSFECIGN----------VKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             HHHHHHTTSCBSEEEECSCC----------HHHHHHHHHTBCTTTCEEEE
T ss_pred             HHHHHHcCCCCcEeeecCCC----------HHHHHHHHHhhcCCceeEEE
Confidence            0  00024579999864432          23567788889998776553

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.037  Score=39.96  Aligned_cols=98  Identities=11%  Similarity=0.044  Sum_probs=62.5

Q ss_pred             hccCCCeEEEecCCC--CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797           81 YARRGDVVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (262)
                      ...++++||=.|+|+  |.....+++....+|++++.|++-++.+++.-.               -+++...-.++.  .
T Consensus        25 ~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa---------------~~vi~~~~~d~~~~v   89 (179)
T d1qora2          25 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA---------------WQVINYREEDLVERL   89 (179)
T ss_dssp             CCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC---------------SEEEETTTSCHHHHH
T ss_pred             CCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC---------------eEEEECCCCCHHHHH
Confidence            357889999997775  556666666555589999999999999887533               112211111110  1


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ... .....+|+|+....-.           .+......++++|.+++.
T Consensus        90 ~~~-t~g~g~d~v~d~~g~~-----------~~~~~~~~l~~~G~~v~~  126 (179)
T d1qora2          90 KEI-TGGKKVRVVYDSVGRD-----------TWERSLDCLQRRGLMVSF  126 (179)
T ss_dssp             HHH-TTTCCEEEEEECSCGG-----------GHHHHHHTEEEEEEEEEC
T ss_pred             HHH-hCCCCeEEEEeCccHH-----------HHHHHHHHHhcCCeeeec
Confidence            111 1346799988655332           346788899999987764

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.01  E-value=0.048  Score=39.54  Aligned_cols=99  Identities=12%  Similarity=-0.035  Sum_probs=61.5

Q ss_pred             hccCCCeEEEecCCC--CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc
Q 024797           81 YARRGDVVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK  158 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  158 (262)
                      ...++++||--|++.  |.....+++....+|+++--|++-.+.+++.-....            +. ...+..+ ... 
T Consensus        28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~v------------i~-~~~~~~~-~~~-   92 (176)
T d1xa0a2          28 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEV------------LA-REDVMAE-RIR-   92 (176)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEE------------EE-CC----------
T ss_pred             CCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhccccee------------ee-cchhHHH-HHH-
Confidence            345688999998765  556666766666689999999999988887543110            11 1111000 000 


Q ss_pred             ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          159 VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       159 ~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                       ....+.+|+|+-.-.-.           .+....+.|++||+++..-
T Consensus        93 -~~~~~gvD~vid~vgg~-----------~~~~~l~~l~~~Griv~~G  128 (176)
T d1xa0a2          93 -PLDKQRWAAAVDPVGGR-----------TLATVLSRMRYGGAVAVSG  128 (176)
T ss_dssp             --CCSCCEEEEEECSTTT-----------THHHHHHTEEEEEEEEECS
T ss_pred             -HhhccCcCEEEEcCCch-----------hHHHHHHHhCCCceEEEee
Confidence             01356899987544322           3577899999999998753

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=94.95  E-value=0.0048  Score=44.52  Aligned_cols=98  Identities=15%  Similarity=0.121  Sum_probs=64.6

Q ss_pred             CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      ++.+|+-+|+|. |......+..-...|+.+|.+.+.++..+.....             +++....+-..+..     .
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~-------------~~~~~~~~~~~l~~-----~   92 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-------------RVELLYSNSAEIET-----A   92 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-------------GSEEEECCHHHHHH-----H
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc-------------cceeehhhhhhHHH-----h
Confidence            578999999997 5555555555556899999999999988876642             24444444322221     1


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEE
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFI  203 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li  203 (262)
                      -...|+|+....+.    ..+-+.-+-+++.+.+|||..++
T Consensus        93 ~~~aDivI~aalip----G~~aP~lIt~~mv~~Mk~GSVIV  129 (168)
T d1pjca1          93 VAEADLLIGAVLVP----GRRAPILVPASLVEQMRTGSVIV  129 (168)
T ss_dssp             HHTCSEEEECCCCT----TSSCCCCBCHHHHTTSCTTCEEE
T ss_pred             hccCcEEEEeeecC----CcccCeeecHHHHhhcCCCcEEE
Confidence            24579999765432    11223334567889999998766

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.013  Score=47.14  Aligned_cols=76  Identities=20%  Similarity=0.221  Sum_probs=53.2

Q ss_pred             CCeEEEecCCCCcchHHHHhcCCC--eEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           85 GDVVLDLACGKGGDLIKWDKAKIG--YYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        85 ~~~vLDiGcG~G~~~~~l~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      +.+|+|+.||.|.+...+-..+..  .+.++|+++.+++..+.++..              ..++++|+.++.....  +
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~--------------~~~~~~di~~~~~~~~--~   65 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH--------------TQLLAKTIEGITLEEF--D   65 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT--------------SCEECSCGGGCCHHHH--H
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHCCC--------------CCcccCchhhCCHhHc--C
Confidence            468999999999988777555543  377999999999988877652              4567788876653221  1


Q ss_pred             CCCeeEEEEccccc
Q 024797          163 DAPFDICSCQFAMH  176 (262)
Q Consensus       163 ~~~fD~V~~~~~l~  176 (262)
                      ...+|+++...-.+
T Consensus        66 ~~~~Dll~ggpPCq   79 (343)
T d1g55a_          66 RLSFDMILMSPPCQ   79 (343)
T ss_dssp             HHCCSEEEECCC--
T ss_pred             CCCccEEEeecccc
Confidence            24689999766443

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.85  E-value=0.031  Score=40.68  Aligned_cols=99  Identities=15%  Similarity=-0.000  Sum_probs=62.6

Q ss_pred             hccCCCeEEEecCCC--CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccc-ccc
Q 024797           81 YARRGDVVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEV-HLD  157 (262)
Q Consensus        81 ~~~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~-~~~  157 (262)
                      ..+++++||-.|++.  |.....+++....+|++++-+++.++.+++.-.               -..+.-+-.+. ...
T Consensus        26 ~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga---------------~~vi~~~~~~~~~~~   90 (182)
T d1v3va2          26 GVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF---------------DAAFNYKTVNSLEEA   90 (182)
T ss_dssp             CCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC---------------SEEEETTSCSCHHHH
T ss_pred             CCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhh---------------hhhcccccccHHHHH
Confidence            457899999888866  445556666555689999999988888877533               11222211111 000


Q ss_pred             cccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          158 KVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       158 ~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ........+|+|+-.-.           ...++...+.|+++|.++..
T Consensus        91 ~~~~~~~Gvd~v~D~vG-----------~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          91 LKKASPDGYDCYFDNVG-----------GEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             HHHHCTTCEEEEEESSC-----------HHHHHHHGGGEEEEEEEEEC
T ss_pred             HHHhhcCCCceeEEecC-----------chhhhhhhhhccCCCeEEee
Confidence            00013466999975332           23567899999999998864

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=94.31  E-value=0.14  Score=41.57  Aligned_cols=61  Identities=15%  Similarity=0.065  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHHHhccCCCeEEEecCCCCcchHHHHhc--------CCCeEEEEeCChhHHHHHHHHhc
Q 024797           68 KLNNWIKSVLVQLYARRGDVVLDLACGKGGDLIKWDKA--------KIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        68 ~~~~~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~--------~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      .+..|+..++......+..+|+|+|+|+|.++..++..        ....++.+|.|+.+.+.-++.+.
T Consensus        63 ~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~  131 (365)
T d1zkda1          63 LLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA  131 (365)
T ss_dssp             HHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence            33445555555554445568999999999987766542        23358999999998888877765

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.27  E-value=0.048  Score=39.18  Aligned_cols=96  Identities=17%  Similarity=0.062  Sum_probs=59.2

Q ss_pred             HHHhccCCCeEEEecC-CC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc
Q 024797           78 VQLYARRGDVVLDLAC-GK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH  155 (262)
Q Consensus        78 ~~~~~~~~~~vLDiGc-G~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~  155 (262)
                      ......++++||-.|+ |. |.....+++....+|++++.+++-++.+++.-..              . .+  |..+..
T Consensus        21 ~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~--------------~-~i--~~~~~~   83 (171)
T d1iz0a2          21 KRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE--------------E-AA--TYAEVP   83 (171)
T ss_dssp             HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS--------------E-EE--EGGGHH
T ss_pred             HHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc--------------e-ee--ehhhhh
Confidence            3445678999999885 43 5566666665555899999999888888764221              1 11  111111


Q ss_pred             cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          156 LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       156 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      .. . .....+|+|+-... .           .+....+.|+++|+++.
T Consensus        84 ~~-~-~~~~g~D~v~d~~G-~-----------~~~~~~~~l~~~G~~v~  118 (171)
T d1iz0a2          84 ER-A-KAWGGLDLVLEVRG-K-----------EVEESLGLLAHGGRLVY  118 (171)
T ss_dssp             HH-H-HHTTSEEEEEECSC-T-----------THHHHHTTEEEEEEEEE
T ss_pred             hh-h-hccccccccccccc-h-----------hHHHHHHHHhcCCcEEE
Confidence            10 0 02356999875321 1           23567789999999875

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.07  E-value=0.025  Score=41.09  Aligned_cols=98  Identities=17%  Similarity=0.109  Sum_probs=59.1

Q ss_pred             hccCCCeEEEecC-C-CCcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc--c
Q 024797           81 YARRGDVVLDLAC-G-KGGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH--L  156 (262)
Q Consensus        81 ~~~~~~~vLDiGc-G-~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~--~  156 (262)
                      ...++++||=.|+ | .|..+..+++....++++++-+++-.+.+++.-.               ...+...-.++.  .
T Consensus        22 ~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga---------------~~vi~~~~~~~~~~v   86 (183)
T d1pqwa_          22 RLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV---------------EYVGDSRSVDFADEI   86 (183)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC---------------SEEEETTCSTHHHHH
T ss_pred             CCCCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccc---------------cccccCCccCHHHHH
Confidence            3568899999874 3 3556666666555588888888877777775422               111211111110  0


Q ss_pred             ccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          157 DKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      .+. .....||+|+....-           ..+..+.+.|+++|+++..
T Consensus        87 ~~~-t~~~g~d~v~d~~g~-----------~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          87 LEL-TDGYGVDVVLNSLAG-----------EAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             HHH-TTTCCEEEEEECCCT-----------HHHHHHHHTEEEEEEEEEC
T ss_pred             HHH-hCCCCEEEEEecccc-----------hHHHHHHHHhcCCCEEEEE
Confidence            111 134679999864432           2456678999999998874

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.01  E-value=0.058  Score=38.80  Aligned_cols=49  Identities=18%  Similarity=0.184  Sum_probs=36.4

Q ss_pred             HhccCCCeEEEecCCCCcc-hHHHHh-cCCCeEEEEeCChhHHHHHHHHhc
Q 024797           80 LYARRGDVVLDLACGKGGD-LIKWDK-AKIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~-~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      ..++++++||-+|+|.+.. ...+++ .....|+++|.+++-++.+++.-.
T Consensus        24 ~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga   74 (176)
T d2jhfa2          24 AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA   74 (176)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred             hCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC
Confidence            4467999999999986433 333333 355689999999999999987643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.03  E-value=0.088  Score=37.68  Aligned_cols=48  Identities=13%  Similarity=0.054  Sum_probs=36.2

Q ss_pred             HhccCCCeEEEecCCCCcchH-HHHh-cCCCeEEEEeCChhHHHHHHHHh
Q 024797           80 LYARRGDVVLDLACGKGGDLI-KWDK-AKIGYYVGIDIAEGSIEDCRTRY  127 (262)
Q Consensus        80 ~~~~~~~~vLDiGcG~G~~~~-~l~~-~~~~~v~gvD~s~~~~~~a~~~~  127 (262)
                      ...+++++||=+|||.+.... .+++ .....|+++|.+++-++.+++.-
T Consensus        24 a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~G   73 (175)
T d1cdoa2          24 AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFG   73 (175)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             hCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcC
Confidence            356789999999999854433 3333 45557999999999999998753

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.96  E-value=0.095  Score=35.68  Aligned_cols=99  Identities=9%  Similarity=-0.075  Sum_probs=55.3

Q ss_pred             eEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCC
Q 024797           87 VVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADD  163 (262)
Q Consensus        87 ~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  163 (262)
                      +++=+|+|  .++..+++   .....|+.+|.+++.++.++...                ...+.+|+.+....... .-
T Consensus         2 ~~iIiG~G--~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~----------------~~~~~gd~~~~~~l~~a-~i   62 (134)
T d2hmva1           2 QFAVIGLG--RFGGSIVKELHRMGHEVLAVDINEEKVNAYASYA----------------THAVIANATEENELLSL-GI   62 (134)
T ss_dssp             CEEEECCS--HHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC----------------SEEEECCTTCTTHHHHH-TG
T ss_pred             EEEEECCC--HHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC----------------Ccceeeecccchhhhcc-CC
Confidence            34555665  45554443   34447999999999988875432                34677888665432111 12


Q ss_pred             CCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          164 APFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       164 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      ...|.|++...-.      . ....+-...+.+.+...++..+.+.+.
T Consensus        63 ~~a~~vi~~~~~~------~-~~~~~~~~~~~~~~~~~iiar~~~~~~  103 (134)
T d2hmva1          63 RNFEYVIVAIGAN------I-QASTLTTLLLKELDIPNIWVKAQNYYH  103 (134)
T ss_dssp             GGCSEEEECCCSC------H-HHHHHHHHHHHHTTCSEEEEECCSHHH
T ss_pred             ccccEEEEEcCch------H-HhHHHHHHHHHHcCCCcEEeecccHhH
Confidence            4568776543221      2 223333344445566677777666543

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.76  E-value=0.29  Score=32.94  Aligned_cols=95  Identities=8%  Similarity=-0.051  Sum_probs=59.5

Q ss_pred             CCCCcchHHHHhcC-CCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCCCeeEEEE
Q 024797           93 CGKGGDLIKWDKAK-IGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDAPFDICSC  171 (262)
Q Consensus        93 cG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~V~~  171 (262)
                      ||.|..+..+++.- ...++.+|.+++.++..+..                .+.++.+|..+....... .-.+.+.+++
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~----------------~~~~i~Gd~~~~~~L~~a-~i~~A~~vi~   68 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS----------------GANFVHGDPTRVSDLEKA-NVRGARAVIV   68 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT----------------TCEEEESCTTSHHHHHHT-TCTTCSEEEE
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc----------------CccccccccCCHHHHHHh-hhhcCcEEEE
Confidence            45566777776632 22488999999988776542                277889998765422111 2345677775


Q ss_pred             cccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChHH
Q 024797          172 QFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDANV  211 (262)
Q Consensus       172 ~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~  211 (262)
                      ...      + +.....+....+.+.|...++..+.+...
T Consensus        69 ~~~------~-d~~n~~~~~~~r~~~~~~~iia~~~~~~~  101 (129)
T d2fy8a1          69 NLE------S-DSETIHCILGIRKIDESVRIIAEAERYEN  101 (129)
T ss_dssp             CCS------S-HHHHHHHHHHHHHHCSSSCEEEECSSGGG
T ss_pred             ecc------c-hhhhHHHHHHHHHHCCCceEEEEEcCHHH
Confidence            331      1 23334455566778999888888776653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.39  E-value=0.43  Score=33.05  Aligned_cols=103  Identities=9%  Similarity=-0.141  Sum_probs=59.8

Q ss_pred             CeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCC
Q 024797           86 DVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLAD  162 (262)
Q Consensus        86 ~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  162 (262)
                      .+|+=+|+|  ..+..+++   .....++.+|.+++......+...            ...+.++.+|..+....... .
T Consensus         4 nHiII~G~g--~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~------------~~~~~vi~Gd~~d~~~L~~a-~   68 (153)
T d1id1a_           4 DHFIVCGHS--ILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL------------GDNADVIPGDSNDSSVLKKA-G   68 (153)
T ss_dssp             SCEEEECCS--HHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH------------CTTCEEEESCTTSHHHHHHH-T
T ss_pred             CEEEEECCC--HHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhh------------cCCcEEEEccCcchHHHHHh-c
Confidence            467777775  44444443   344579999999875443333322            23488899998765432111 2


Q ss_pred             CCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEEeCChH
Q 024797          163 DAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGTMPDAN  210 (262)
Q Consensus       163 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~  210 (262)
                      -...|.|++...      + +.....+....+-+.|...+++.+.+..
T Consensus        69 i~~a~~vi~~~~------~-d~~n~~~~~~~r~~~~~~~iia~~~~~~  109 (153)
T d1id1a_          69 IDRCRAILALSD------N-DADNAFVVLSAKDMSSDVKTVLAVSDSK  109 (153)
T ss_dssp             TTTCSEEEECSS------C-HHHHHHHHHHHHHHTSSSCEEEECSSGG
T ss_pred             cccCCEEEEccc------c-HHHHHHHHHHHHHhCCCCceEEEEcCHH
Confidence            345788876431      1 2223334445666778888888776654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.47  Score=36.12  Aligned_cols=84  Identities=14%  Similarity=0.066  Sum_probs=55.5

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD---  157 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---  157 (262)
                      +++.+|-.|++.| .+..+++   ....+|+++|.+++.++.+.+.+...        ....++.++++|+.+..-.   
T Consensus         9 k~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~--------~~~~~~~~~~~Dls~~~~v~~~   79 (257)
T d1xg5a_           9 RDRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSA--------GYPGTLIPYRCDLSNEEDILSM   79 (257)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--------TCSSEEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------CCCceEEEEEccCCCHHHHHHH
Confidence            6788999999887 5555443   23347999999999888887766532        2234578889998764311   


Q ss_pred             --cccCCCCCeeEEEEccccc
Q 024797          158 --KVLADDAPFDICSCQFAMH  176 (262)
Q Consensus       158 --~~~~~~~~fD~V~~~~~l~  176 (262)
                        ......+..|+++.+....
T Consensus        80 v~~~~~~~g~iD~lVnnAg~~  100 (257)
T d1xg5a_          80 FSAIRSQHSGVDICINNAGLA  100 (257)
T ss_dssp             HHHHHHHHCCCSEEEECCCCC
T ss_pred             HHHHHHhcCCCCEEEeccccc
Confidence              0111236799998776443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=91.82  E-value=0.046  Score=39.75  Aligned_cols=45  Identities=18%  Similarity=0.093  Sum_probs=35.3

Q ss_pred             CCCeEEEecCCC-CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhc
Q 024797           84 RGDVVLDLACGK-GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYN  128 (262)
Q Consensus        84 ~~~~vLDiGcG~-G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~  128 (262)
                      ++.+||-+|+|. |......+..-...|+.+|.++..+++.+....
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~   73 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG   73 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence            678999999997 545555555555589999999999999987654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=91.63  E-value=0.22  Score=38.10  Aligned_cols=60  Identities=22%  Similarity=0.309  Sum_probs=40.0

Q ss_pred             eEEEeCcccccccccccCCCCCeeEEEEccccccc---C----CCHHHHHHHHHHHHhccCCCcEEEEEe
Q 024797          144 ARLICGDCYEVHLDKVLADDAPFDICSCQFAMHYS---W----STEARARRALANVSALLRPGGTFIGTM  206 (262)
Q Consensus       144 v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~----~~~~~~~~~l~~~~~~L~~gG~li~~~  206 (262)
                      -.++++|+.+.- ..  .+++++|+|+..--..-.   +    +-.+.....+.++.|+|+|+|.+++..
T Consensus         5 ~~~~~~D~le~l-~~--l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~   71 (279)
T d1eg2a_           5 HVYDVCDCLDTL-AK--LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG   71 (279)
T ss_dssp             EEEEECCHHHHH-HT--SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ceEEechHHHHH-hh--CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence            346788876541 11  168999999986532100   0    012456788999999999999998864

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.41  Score=36.20  Aligned_cols=82  Identities=18%  Similarity=0.099  Sum_probs=56.0

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc--
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK--  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--  158 (262)
                      .|..+|--|++.| ++..++.   ....+|+.+|.+++.++...+.+...          +.++..+.+|+.+.....  
T Consensus         6 ~Gkv~lITGas~G-IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~----------~~~~~~~~~Dvs~~~~v~~~   74 (244)
T d1yb1a_           6 TGEIVLITGAGHG-IGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL----------GAKVHTFVVDCSNREDIYSS   74 (244)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------TCCEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------CCcEEEEEeeCCCHHHHHHH
Confidence            5778888899887 5554443   23447999999999888887776532          345888999987753210  


Q ss_pred             ---ccCCCCCeeEEEEccccc
Q 024797          159 ---VLADDAPFDICSCQFAMH  176 (262)
Q Consensus       159 ---~~~~~~~fD~V~~~~~l~  176 (262)
                         .....+..|+++.+....
T Consensus        75 ~~~i~~~~g~idilinnag~~   95 (244)
T d1yb1a_          75 AKKVKAEIGDVSILVNNAGVV   95 (244)
T ss_dssp             HHHHHHHTCCCSEEEECCCCC
T ss_pred             HHHHHHHcCCCceeEeecccc
Confidence               111347799999876554

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=90.53  E-value=0.3  Score=34.72  Aligned_cols=96  Identities=13%  Similarity=0.053  Sum_probs=58.3

Q ss_pred             cCCCeEEEecCCC--CcchHHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccccc
Q 024797           83 RRGDVVLDLACGK--GGDLIKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVL  160 (262)
Q Consensus        83 ~~~~~vLDiGcG~--G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  160 (262)
                      .++.+||--|++.  |.....+++....+|+++.-|++-.+.+++.-..              ..+...|...-..  ..
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad--------------~vi~~~~~~~~~~--~~   85 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS--------------EVISREDVYDGTL--KA   85 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS--------------EEEEHHHHCSSCC--CS
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc--------------ceEeccchhchhh--hc
Confidence            4566788776543  5566667665455899999999888888776431              1111111111000  00


Q ss_pred             CCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          161 ADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       161 ~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      ...+.+|+|+-.-.           ...+.+..+.|+++|++++.
T Consensus        86 ~~~~gvd~vid~vg-----------g~~~~~~~~~l~~~G~iv~~  119 (167)
T d1tt7a2          86 LSKQQWQGAVDPVG-----------GKQLASLLSKIQYGGSVAVS  119 (167)
T ss_dssp             SCCCCEEEEEESCC-----------THHHHHHHTTEEEEEEEEEC
T ss_pred             ccCCCceEEEecCc-----------HHHHHHHHHHhccCceEEEe
Confidence            13467999874332           12567799999999998864

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=90.50  E-value=0.15  Score=38.53  Aligned_cols=60  Identities=12%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             EEEeCcccccccccccCCCCCeeEEEEcccccc----c--CCCH----HHHHHHHHHHHhccCCCcEEEEEeC
Q 024797          145 RLICGDCYEVHLDKVLADDAPFDICSCQFAMHY----S--WSTE----ARARRALANVSALLRPGGTFIGTMP  207 (262)
Q Consensus       145 ~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~~----~--~~~~----~~~~~~l~~~~~~L~~gG~li~~~~  207 (262)
                      +++++|+.+.- ..  .+++++|+|++.--..-    .  ..+.    +.....+.++.++|+|||.+++...
T Consensus         6 ~i~~gDcle~l-~~--lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~   75 (256)
T d1g60a_           6 KIHQMNCFDFL-DQ--VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT   75 (256)
T ss_dssp             SEEECCHHHHH-HH--SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEeccHHHHH-hh--CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC
Confidence            46888876631 11  16889999998643210    0  0112    2345688899999999998876543

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.00  E-value=0.84  Score=32.70  Aligned_cols=96  Identities=10%  Similarity=-0.039  Sum_probs=56.0

Q ss_pred             ccCC--CeEEEecC--CCCcchHHHHhc-CCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccc-
Q 024797           82 ARRG--DVVLDLAC--GKGGDLIKWDKA-KIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVH-  155 (262)
Q Consensus        82 ~~~~--~~vLDiGc--G~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~-  155 (262)
                      .+++  ++||-.|+  |.|.....+++. +...++++.-+++......+.+.-              ..++...-.++. 
T Consensus        26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~ga--------------d~vi~~~~~~~~~   91 (187)
T d1vj1a2          26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGF--------------DAAVNYKTGNVAE   91 (187)
T ss_dssp             CCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCC--------------SEEEETTSSCHHH
T ss_pred             CCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccc--------------eEEeeccchhHHH
Confidence            3454  77998773  457788888774 455688888777665555443320              111221111111 


Q ss_pred             -cccccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          156 -LDKVLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       156 -~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                       ....  .+..+|+|+-...           ...+....+.|+++|+++.
T Consensus        92 ~~~~~--~~~GvDvv~D~vG-----------g~~~~~~~~~l~~~G~iv~  128 (187)
T d1vj1a2          92 QLREA--CPGGVDVYFDNVG-----------GDISNTVISQMNENSHIIL  128 (187)
T ss_dssp             HHHHH--CTTCEEEEEESSC-----------HHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHH--hccCceEEEecCC-----------chhHHHHhhhccccccEEE
Confidence             1111  2356999974331           2356788999999999875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=87.98  E-value=1.7  Score=30.39  Aligned_cols=102  Identities=16%  Similarity=0.065  Sum_probs=54.2

Q ss_pred             CeEEEecCCCCcch-HHHHhcCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccccccCCCC
Q 024797           86 DVVLDLACGKGGDL-IKWDKAKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDKVLADDA  164 (262)
Q Consensus        86 ~~vLDiGcG~G~~~-~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  164 (262)
                      .+|-=+|+|.-... ...+....-.|+.+|.+++-++..++.....  .................|..+        .-.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~e--------~~~   71 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAII--AEGPGLAGTAHPDLLTSDIGL--------AVK   71 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEE--EESSSCCEEECCSEEESCHHH--------HHT
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCc--hhhhhhhhhhhhhhhhhhhHh--------Hhc
Confidence            46778899873322 2222233347999999998888877643210  000000000000111111111        014


Q ss_pred             CeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEE
Q 024797          165 PFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIG  204 (262)
Q Consensus       165 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~  204 (262)
                      ..|+|++.--       ......++.++...|+++-.+++
T Consensus        72 ~aD~iii~v~-------~~~~~~~~~~i~~~l~~~~~iv~  104 (184)
T d1bg6a2          72 DADVILIVVP-------AIHHASIAANIASYISEGQLIIL  104 (184)
T ss_dssp             TCSEEEECSC-------GGGHHHHHHHHGGGCCTTCEEEE
T ss_pred             CCCEEEEEEc-------hhHHHHHHHHhhhccCCCCEEEE
Confidence            5799886432       23457788999999998876554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=87.74  E-value=0.69  Score=34.98  Aligned_cols=81  Identities=17%  Similarity=0.209  Sum_probs=54.5

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD---  157 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---  157 (262)
                      +++.+|-.|++.| ++..+++   ....+|+.+|.+++.++.+.+.+..          ...++.++++|+.+....   
T Consensus         9 enKvalITGas~G-IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~----------~g~~~~~~~~Dvt~~~~v~~~   77 (251)
T d2c07a1           9 ENKVALVTGAGRG-IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKS----------FGYESSGYAGDVSKKEEISEV   77 (251)
T ss_dssp             SSCEEEEESTTSH-HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHT----------TTCCEEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHh----------cCCcEEEEEccCCCHHHHHHH
Confidence            5778888888776 5555444   2334799999999998888777653          234588899998764321   


Q ss_pred             --cccCCCCCeeEEEEcccc
Q 024797          158 --KVLADDAPFDICSCQFAM  175 (262)
Q Consensus       158 --~~~~~~~~fD~V~~~~~l  175 (262)
                        .....-+..|+++.+...
T Consensus        78 ~~~~~~~~g~iDilvnnag~   97 (251)
T d2c07a1          78 INKILTEHKNVDILVNNAGI   97 (251)
T ss_dssp             HHHHHHHCSCCCEEEECCCC
T ss_pred             HHHHHHhcCCceeeeecccc
Confidence              111124789999987644

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.45  E-value=0.89  Score=34.15  Aligned_cols=78  Identities=18%  Similarity=0.169  Sum_probs=52.2

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc-ccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKV  159 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  159 (262)
                      .|+++|-.|++.| .+..+++   ....+|+.+|.+++.++...+...              .+..+++|+.+... ...
T Consensus         6 ~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~--------------~~~~~~~Dv~d~~~v~~~   70 (244)
T d1pr9a_           6 AGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVRECP--------------GIEPVCVDLGDWEATERA   70 (244)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST--------------TCEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC--------------CCeEEEEeCCCHHHHHHH
Confidence            6789999998877 5544433   233489999999988877766543              36778888866432 111


Q ss_pred             cCCCCCeeEEEEccccc
Q 024797          160 LADDAPFDICSCQFAMH  176 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l~  176 (262)
                      ...-++.|+++.+....
T Consensus        71 ~~~~g~iDilVnnAg~~   87 (244)
T d1pr9a_          71 LGSVGPVDLLVNNAAVA   87 (244)
T ss_dssp             HTTCCCCCEEEECCCCC
T ss_pred             HHHhCCceEEEeccccc
Confidence            22347899999776443

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=86.84  E-value=0.51  Score=38.46  Aligned_cols=47  Identities=11%  Similarity=0.055  Sum_probs=37.9

Q ss_pred             cCCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhcc
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNG  129 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~  129 (262)
                      .++..++|+|+-.|..+..++.   ....+|+++|+++...+..++++..
T Consensus       211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~  260 (395)
T d2py6a1         211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  260 (395)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            4677999999999988776654   2345899999999999999887653

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.89  E-value=6.5  Score=30.67  Aligned_cols=120  Identities=14%  Similarity=0.069  Sum_probs=69.7

Q ss_pred             cCCCeEEEecCCCCcchHHHHh-cCCCeEEEEeCChhHHHHHHHHhccCcc----------cc--ccccCCCCCeEEEeC
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK-AKIGYYVGIDIAEGSIEDCRTRYNGDAD----------HH--QRRKKFSFPARLICG  149 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~-~~~~~v~gvD~s~~~~~~a~~~~~~~~~----------~~--~~~~~~~~~v~~~~~  149 (262)
                      .+...|+-+|||.=.....+.. .+...++=+|+-+ +++.=++.+.+...          ..  ........+...+.+
T Consensus        95 ~~~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~-vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~  173 (328)
T d1rjda_          95 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNE-SVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC  173 (328)
T ss_dssp             CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHH-HHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred             CCCcEEEEeCCccchHHHHhhccCCCcEEEECCcHH-HHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEec
Confidence            3455899999998655555543 2333466677644 33332222221100          00  000011345778888


Q ss_pred             ccccccccc----ccCCCCCeeEEEEcccccccCCCHHHHHHHHHHHHhccCCCcEEEEE
Q 024797          150 DCYEVHLDK----VLADDAPFDICSCQFAMHYSWSTEARARRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       150 d~~~~~~~~----~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L~~gG~li~~  205 (262)
                      |+.+.....    .......--++++=+++.|+  +++...++++.+.+....+..++..
T Consensus       174 DL~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl--~~~~~~~li~~~~~~f~~~~~i~YE  231 (328)
T d1rjda_         174 DLNDITETTRLLDVCTKREIPTIVISECLLCYM--HNNESQLLINTIMSKFSHGLWISYD  231 (328)
T ss_dssp             CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS--CHHHHHHHHHHHHHHCSSEEEEEEE
T ss_pred             CCCCcHhhHHHHHccCCCCCCeEEEEeeehhcC--CHHHHHHHHHHHHHhCCCceEEEec
Confidence            987754321    11123445688888999999  8888999999999988765555443

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=85.27  E-value=0.46  Score=36.91  Aligned_cols=63  Identities=13%  Similarity=0.193  Sum_probs=41.7

Q ss_pred             CeEEEeCcccccccccccCCCCCeeEEEEccccc----ccCC--C----HHHHHHHHHHHHhccCCCcEEEEEeCC
Q 024797          143 PARLICGDCYEVHLDKVLADDAPFDICSCQFAMH----YSWS--T----EARARRALANVSALLRPGGTFIGTMPD  208 (262)
Q Consensus       143 ~v~~~~~d~~~~~~~~~~~~~~~fD~V~~~~~l~----~~~~--~----~~~~~~~l~~~~~~L~~gG~li~~~~~  208 (262)
                      +-.++++|..+.- . . .+++++|+|+..--..    +-..  .    .+.....+.+++++|+++|.+++.+.+
T Consensus        12 ~~~l~~GD~le~l-~-~-l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~~   84 (320)
T d1booa_          12 NGSMYIGDSLELL-E-S-FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGG   84 (320)
T ss_dssp             SEEEEESCHHHHG-G-G-SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCEEEehhHHHHH-h-h-CccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccccc
Confidence            3478899976531 1 1 1689999999864221    1000  1    133567899999999999999887643

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.36  E-value=0.89  Score=34.35  Aligned_cols=85  Identities=15%  Similarity=0.069  Sum_probs=55.3

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCcccccccc---
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLD---  157 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~---  157 (262)
                      .|+++|--|++.| ++..+++   ....+|+.+|.+++.++.+.+.+.+.        ....++.++++|+.+....   
T Consensus         2 ~GKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~--------~~~~~~~~~~~Dv~~~~~v~~~   72 (254)
T d2gdza1           2 NGKVALVTGAAQG-IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ--------FEPQKTLFIQCDVADQQQLRDT   72 (254)
T ss_dssp             TTCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT--------SCGGGEEEEECCTTSHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHh--------cCCCcEEEEEeecCCHHHHHHH
Confidence            4678888898876 5555443   24448999999999888877766421        1134588899998764321   


Q ss_pred             --cccCCCCCeeEEEEcccccc
Q 024797          158 --KVLADDAPFDICSCQFAMHY  177 (262)
Q Consensus       158 --~~~~~~~~fD~V~~~~~l~~  177 (262)
                        .....-++.|+++.+.....
T Consensus        73 ~~~~~~~~G~iDilVnnAg~~~   94 (254)
T d2gdza1          73 FRKVVDHFGRLDILVNNAGVNN   94 (254)
T ss_dssp             HHHHHHHHSCCCEEEECCCCCC
T ss_pred             HHHHHHHcCCcCeecccccccc
Confidence              01112368999998775543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.22  E-value=0.66  Score=34.88  Aligned_cols=76  Identities=17%  Similarity=0.086  Sum_probs=50.4

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccccc--
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHLDK--  158 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~--  158 (262)
                      +++++|--|++.| .+..+++   ....+|+.+|.+++.++.+.+...               +.++++|+.+...-.  
T Consensus         4 ~gK~~lITGas~G-IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~---------------~~~~~~Dv~~~~~v~~~   67 (242)
T d1ulsa_           4 KDKAVLITGAAHG-IGRATLELFAKEGARLVACDIEEGPLREAAEAVG---------------AHPVVMDVADPASVERG   67 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTT---------------CEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC---------------CeEEEEecCCHHHHHHH
Confidence            5778999998877 5554443   233479999999988887766543               677889987643210  


Q ss_pred             ---ccCCCCCeeEEEEcccc
Q 024797          159 ---VLADDAPFDICSCQFAM  175 (262)
Q Consensus       159 ---~~~~~~~fD~V~~~~~l  175 (262)
                         ....-++.|+++.+...
T Consensus        68 ~~~~~~~~g~iDilVnnAG~   87 (242)
T d1ulsa_          68 FAEALAHLGRLDGVVHYAGI   87 (242)
T ss_dssp             HHHHHHHHSSCCEEEECCCC
T ss_pred             HHHHHHhcCCceEEEECCcc
Confidence               01122679999877543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=83.70  E-value=1.2  Score=33.69  Aligned_cols=111  Identities=17%  Similarity=0.063  Sum_probs=64.7

Q ss_pred             cCCCeEEEecCCCCcchHHHHh----cCCCeEEE-EeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc-
Q 024797           83 RRGDVVLDLACGKGGDLIKWDK----AKIGYYVG-IDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-  156 (262)
Q Consensus        83 ~~~~~vLDiGcG~G~~~~~l~~----~~~~~v~g-vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-  156 (262)
                      -.|+++|=.|++.| .+..+++    .+. +|+. .+-+++.++.+.+.+..          .+.++.++.+|+.+..- 
T Consensus         4 L~GK~alITGas~G-IG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~----------~g~~~~~~~~D~~~~~~v   71 (259)
T d1ja9a_           4 LAGKVALTTGAGRG-IGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKK----------LGAQGVAIQADISKPSEV   71 (259)
T ss_dssp             TTTCEEEETTTTSH-HHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHH----------TTCCEEEEECCTTSHHHH
T ss_pred             CCCCEEEEeCCCCH-HHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHH----------cCCCceEecCCCCCHHHH
Confidence            35788998887665 5544433    344 5554 56677777777776652          24468889999876421 


Q ss_pred             ----ccccCCCCCeeEEEEcccccccCC----CHHHH-----------HHHHHHHHhccCCCcEEEEE
Q 024797          157 ----DKVLADDAPFDICSCQFAMHYSWS----TEARA-----------RRALANVSALLRPGGTFIGT  205 (262)
Q Consensus       157 ----~~~~~~~~~fD~V~~~~~l~~~~~----~~~~~-----------~~~l~~~~~~L~~gG~li~~  205 (262)
                          .......+..|+++.+....+..+    +.++.           -...+.+...++.+|.+++.
T Consensus        72 ~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii  139 (259)
T d1ja9a_          72 VALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT  139 (259)
T ss_dssp             HHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence                011112367999998765543311    22222           23455666677777666554

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.47  E-value=2.1  Score=31.97  Aligned_cols=77  Identities=19%  Similarity=0.142  Sum_probs=50.7

Q ss_pred             CCCeEEEecCCCCcchHHHHh---cCCCeEEEEeCChhHHHHHHHHhccCccccccccCCCCCeEEEeCccccccc-ccc
Q 024797           84 RGDVVLDLACGKGGDLIKWDK---AKIGYYVGIDIAEGSIEDCRTRYNGDADHHQRRKKFSFPARLICGDCYEVHL-DKV  159 (262)
Q Consensus        84 ~~~~vLDiGcG~G~~~~~l~~---~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~~-~~~  159 (262)
                      .|+++|-.|++.| ++..+++   ....+|+.+|.+++.++...+...              .+..+++|+.+... ...
T Consensus         4 ~GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~--------------~~~~~~~Dv~~~~~v~~~   68 (242)
T d1cyda_           4 SGLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP--------------GIEPVCVDLGDWDATEKA   68 (242)
T ss_dssp             TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST--------------TCEEEECCTTCHHHHHHH
T ss_pred             CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC--------------CCeEEEEeCCCHHHHHHH
Confidence            5788998898876 5544433   233489999999887776665443              37778888876432 111


Q ss_pred             cCCCCCeeEEEEcccc
Q 024797          160 LADDAPFDICSCQFAM  175 (262)
Q Consensus       160 ~~~~~~fD~V~~~~~l  175 (262)
                      ...-++.|+++.+...
T Consensus        69 ~~~~g~iDilVnnAg~   84 (242)
T d1cyda_          69 LGGIGPVDLLVNNAAL   84 (242)
T ss_dssp             HTTCCCCSEEEECCCC
T ss_pred             HHHcCCCeEEEECCcc
Confidence            2234789999977543