Citrus Sinensis ID: 024822

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MDITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSLITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLEFDSYIAMRGLIIQGIELRPKSD
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHcccccHHHHHHHHccHHHHHHHcccccccccccccHHHHHcccccccccccccccccccEEcccccEEEcccccEEEEccccccEEEEEcccccEEEccccccEEEEEccccccccccEEEEEEEEEEEEEEEEEEccccccEEEEEEEEEEcccccccccccEEEEEEEcccccEEEEEEEEccccccccccccccccEEEEEEEEEEEccccccEEEEEEEEEccccccccEEEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHcccHHHHHHccccHHHHHHHccccccccccccHHHHHHHHHcccEEEccccEEEEEEcccccEEEEEEcccEEEEEccccccEEEEccccccHHHHHHHHHEEEEEEEEEEcccEcccccEEEEEEEEEEcccccccccccEEEEEEEccccccEEEEEEEccccccccccccccccEEEEEEEEEEEccccccEEEEEEEEEcccccccEEEEEEEEEEcccc
Coil and Loop (DISEMBL)
MDITIALPAECISNIIslttprdacrlsVVSRVFrsaadsdsawenflpsdykqiisnsvsdsslitslskkDLYFhlchnpiiinngtmsfalepesgkkcymvgarglsiagadepytwiltslpesrfpevakVNSVWWFNVKAMIETKILSLRANYGAYLVFKFaesrsgferrpviSRVYiegsdnglrrslsldpsrnmarlsqdrgdgwmeiemgeffnenggdgMLVCSLLEFDSYIAMRGLIIQGielrpksd
Flexible Loop (DISEMBL)
MDITIALPAECISNiislttprdacrLSVVSRVFRsaadsdsawenfLPSDYKQIISNSVSDSSLITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFaesrsgferrpvisrvyiegsdnglrrslsldpsrnmARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLEFDSYIAMRGLIIQgielrpksd
Low Complexity Region (SEG)
MDITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYkqiisnsvsdsslitslskkdlYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLEFDSYIAMRGLIIQGIELRPKSD
Disordered region (IsUnstruct)
**ITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSLITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYIE***************************GWMEIEMGEFFNENGGDGMLVCSLLEFDSYIAMRGLIIQGIE******
Disordered Region (DISOPRED)
**ITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISN************KKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLEFDSYIAMRGLIIQGIELRPK**
Disordered Region (DISEMBL)
MDITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSLITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLEFDSYIAMRGLIIQGIELRPKSD
Disordered Region (DISPRO)
**ITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSLITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLEFDSYIAMRGLIIQGIELRPKS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSLITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLEFDSYIAMRGLIIQGIELRPKSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q9ZVR5	310	Putative F-box protein PP	yes	no	0.935	0.790	0.431	7e-51
Q9FLU7	251	Putative F-box protein PP	no	no	0.927	0.968	0.437	4e-50
Q9ZVQ6	272	F-box protein PP2-B10 OS=	no	no	0.938	0.904	0.421	1e-48
Q3E6P4	320	F-box protein At2g02240 O	no	no	0.942	0.771	0.409	3e-48
Q949S5	257	F-box protein PP2-B11 OS=	no	no	0.938	0.957	0.420	6e-48
Q9FV02	294	F-box protein SKIP3 OS=Ar	no	no	0.935	0.833	0.402	4e-45
Q9ZVQ8	305	Putative F-box protein PP	no	no	0.950	0.816	0.389	3e-44
Q9ZVR0	307	Putative F-box protein PP	no	no	0.942	0.804	0.386	3e-43
Q6NPT8	336	F-box protein PP2-B1 OS=A	no	no	0.950	0.741	0.356	5e-43
O80494	289	F-box protein PP2-B15 OS=	no	no	0.965	0.875	0.367	2e-38

>sp|Q9ZVR5|PP2B2_ARATH Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=4 SV=2

 Score =  200 bits (509), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 113/262 (43%), Positives = 156/262 (59%), Gaps = 17/262 (6%)

Query: 7   LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSLI 66
           LP +CISNIIS T+PRDAC  + VS+ F SA +SDS W+ FLPSDY  ++  S   S   
Sbjct: 50  LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFS--- 106

Query: 67  TSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVG-ARGLSIAGADEPYTWILTS 125
              SKK+LYF +C NP+++ +G  SF LE E+GKKC+M+   + + I     P  W   S
Sbjct: 107 ---SKKELYFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWIS 163

Query: 126 LPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVY 185
           +PE+RF EV ++ +V WF V+  + TK LS    Y AY+VFK           PV + V 
Sbjct: 164 IPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVG 223

Query: 186 IEGSDNGLRRSLSLDPS--------RNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCS 237
           + G ++  R    + PS        R++ R ++ R DGWME E+G+FFNE+G D ++  S
Sbjct: 224 LVGQESSQRHIYFVGPSDQRRDRETRDVTRPTK-RKDGWMEAELGQFFNESGCD-VVDTS 281

Query: 238 LLEFDSYIAMRGLIIQGIELRP 259
           +LE  +    RGLIIQGIE RP
Sbjct: 282 ILEIKTPYWKRGLIIQGIEFRP 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLU7|P2B12_ARATH Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1

 Score =  198 bits (503), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 113/258 (43%), Positives = 153/258 (59%), Gaps = 15/258 (5%)

Query: 5   IALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSS 64
           + LP ECI+ +IS T+P DACR+S VS++ RSAADS++ WE FLPSDY+  I NS+S   
Sbjct: 4   LDLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLS--- 60

Query: 65  LITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILT 124
                S K L+   C +P++I +G  SF +E  SGKKC+M+ AR L I   D P  WI  
Sbjct: 61  ---RFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWV 117

Query: 125 SLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRS-GFERRPVISR 183
           S+P+SRF EVA +  V WF ++  I T +LS   NY AYLVFK  E  S GFE  P    
Sbjct: 118 SIPDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLP---- 173

Query: 184 VYIEGSDNGLRRSLSLDPSRNMARLSQD-RGDGWMEIEMGEFFNENGGDGMLVCSLLEFD 242
             +E S    R  +  +    +   +Q+ R DGW+EIE+GE++     D  +  S+LE  
Sbjct: 174 --LEVSFRSTRTEVYNNRRVFLKSGTQESREDGWLEIELGEYYV-GFDDEEIEMSVLETR 230

Query: 243 SYIAMRGLIIQGIELRPK 260
                 G+I+QGIE+RPK
Sbjct: 231 EGGWKGGIIVQGIEIRPK 248

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ6|P2B10_ARATH F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1

 Score =  193 bits (490), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 110/261 (42%), Positives = 149/261 (57%), Gaps = 15/261 (5%)

Query: 6   ALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSL 65
           + P +CIS IIS T PRDAC  + VS+ F S   SD  WE FLP+DY+ +I  S   SS 
Sbjct: 16  SFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSS- 74

Query: 66  ITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTS 125
                KK+LYF LC++P++ ++   S  LE  SGK+C M+ A  LSI   D P  W    
Sbjct: 75  -----KKELYFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIP 129

Query: 126 LPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVY 185
           +PESRF +VAK+  V WF ++    T++LS R  Y AY+VFK  +   GF+   + + V 
Sbjct: 130 IPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVG 189

Query: 186 IEGSDNGLRRSLSLDPS-----RNMARLSQDRGDGWMEIEMGEFFNENG--GDGMLVCSL 238
           + G +   RR +    +     RN+ +  Q R DGWMEIE+GEFFN+ G   +  +  S 
Sbjct: 190 VVGQEPS-RRLICFSEAIRRGRRNVVKPKQ-REDGWMEIELGEFFNDGGIMDNDEIEMSA 247

Query: 239 LEFDSYIAMRGLIIQGIELRP 259
           LE        GLIIQGIE+RP
Sbjct: 248 LETKQLNRKCGLIIQGIEIRP 268

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E6P4|FB95_ARATH F-box protein At2g02240 OS=Arabidopsis thaliana GN=At2g02240 PE=2 SV=1

 Score =  192 bits (487), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/261 (40%), Positives = 144/261 (55%), Gaps = 14/261 (5%)

Query: 6   ALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSL 65
            LP +CISNIIS T+PRDAC  + VS+ F SA  SD  W+ FLP +Y+ ++S S      
Sbjct: 63  VLPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSR----- 117

Query: 66  ITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTS 125
               SKK+LYF LCHNP++I +G  SF LE  SGK+C M+ ++ L I     P  W   S
Sbjct: 118 -VFASKKELYFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWIS 176

Query: 126 LPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVY 185
           +PESRF ++A++  V WF ++     ++LS    Y AY+VFK  +   G    PV   + 
Sbjct: 177 IPESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLG 236

Query: 186 IEGSDNGLRRSLSLDPSRNMARLS-------QDRGDGWMEIEMGEFFNENGGDGMLVCSL 238
           + G ++  R    + P     R           R DGWME E+GEFFNE   D +   S+
Sbjct: 237 LVGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFNEERCDEIEF-SV 295

Query: 239 LEFDSYIAMRGLIIQGIELRP 259
           +E  S     GLIIQGIE RP
Sbjct: 296 IEIKSPSWKSGLIIQGIEFRP 316

Arabidopsis thaliana (taxid: 3702)

>sp|Q949S5|P2B11_ARATH F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1

 Score =  191 bits (484), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 109/259 (42%), Positives = 149/259 (57%), Gaps = 13/259 (5%)

Query: 7   LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSLI 66
           LP +CI+ I+SLTTP D CRLS VS +FRSAA SD  W +FLP+D+    +   + + L 
Sbjct: 4   LPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFP---AGFAAPAGLP 60

Query: 67  TSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSL 126
           T   +K L+F L  NP++IN   +SF+LE +SG KCYM+ AR L+I    E   W   SL
Sbjct: 61  T---RKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISL 117

Query: 127 PESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYI 186
           P +RF EVA++  VWW  +   I   +LS    Y AY VFK+  S  GF R+PV + + +
Sbjct: 118 PNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGF-RQPVETSLVL 176

Query: 187 ---EGSDNGLRR---SLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLE 240
              E +DN ++    SL  D      +    R DGW E+E+G+FF   G  G +  SL E
Sbjct: 177 ADTESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGDLGEIEMSLKE 236

Query: 241 FDSYIAMRGLIIQGIELRP 259
                  +GLI+ GIE+RP
Sbjct: 237 TKGPYEKKGLIVYGIEIRP 255

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FV02|SKIP3_ARATH F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2

 Score =  181 bits (460), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 107/266 (40%), Positives = 150/266 (56%), Gaps = 21/266 (7%)

Query: 6   ALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSL 65
           +LP  CISNIIS T+P DAC  + VS++F SA  SD  WE FLP+DY+ +I+ S   S  
Sbjct: 26  SLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLITPSRVFS-- 83

Query: 66  ITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGL---SIAGADEPYTWI 122
               SKK+LYF LC++P++I +G MS  LE  SGK+C M+ A  +   S+A   + + WI
Sbjct: 84  ----SKKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLWI 139

Query: 123 LTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVIS 182
               PESRF  VA +   + F     + T++LSLR  Y  Y+VFK A++  GF+   + +
Sbjct: 140 --PCPESRFETVAALREAYRFEFNCRMNTRVLSLRTRYSVYIVFKKADNWCGFKGVSIEA 197

Query: 183 RVYIEGSDNGLRRSLSLDP-------SRNMARLSQDRGDGWMEIEMGEFFNENG--GDGM 233
            V I G ++  R  +  D         R +    + R DGWME E+GEF+NE G      
Sbjct: 198 VVGIVGEES-FRSFICFDTHGKGQARKRKVVAKPELREDGWMETEIGEFYNEGGLMSSDE 256

Query: 234 LVCSLLEFDSYIAMRGLIIQGIELRP 259
           +  S +E       RGL+I GIE+RP
Sbjct: 257 VEISTVEGKYAQQKRGLVILGIEIRP 282

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVQ8|PP2B8_ARATH Putative F-box protein PP2-B8 OS=Arabidopsis thaliana GN=PP2B8 PE=4 SV=1

 Score =  179 bits (453), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/267 (38%), Positives = 149/267 (55%), Gaps = 18/267 (6%)

Query: 7   LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSLI 66
           LP EC+S I+S T+P+DAC L+ VS+ F SA  SD  WE F+P +Y+ +IS S +     
Sbjct: 39  LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRA----F 94

Query: 67  TSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSL 126
             LSKK+LYF LC   ++I++G  S  +E  + K+C M+ A  L+IA  + P +W     
Sbjct: 95  KFLSKKELYFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPD 154

Query: 127 PESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYI 186
           P++RF  VA++  V  F ++  I ++++S +  Y AY+V+K      GFE   V   V +
Sbjct: 155 PQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGV 214

Query: 187 EGSD--NGLRRSLSLDPSRNMARLSQDRG----------DGWMEIEMGEFFNENG--GDG 232
            G D     RR +  D + +     +DRG          DGWMEI++GEFFNE G   D 
Sbjct: 215 VGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKPERRKDGWMEIKIGEFFNEGGLLNDD 274

Query: 233 MLVCSLLEFDSYIAMRGLIIQGIELRP 259
            +    LE       RGLIIQGIE+RP
Sbjct: 275 EIEMVALEAKQRHWKRGLIIQGIEIRP 301

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVR0|PP2B6_ARATH Putative F-box protein PP2-B6 OS=Arabidopsis thaliana GN=PP2B6 PE=4 SV=1

 Score =  175 bits (443), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/264 (38%), Positives = 149/264 (56%), Gaps = 17/264 (6%)

Query: 7   LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSLI 66
           LP +CISNIIS T+PRD C  + VS+ F  A   DS WE FLPS+Y+ +I      SS  
Sbjct: 48  LPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRVFSS-- 105

Query: 67  TSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSL 126
               KKDLYF LC++P+++ +G  SF LE  SGKKC ++ A+ L I G + P  W    L
Sbjct: 106 ----KKDLYFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIEL 161

Query: 127 PESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYI 186
            ES F +V ++ +   F +   + T+ILSL  +Y  Y+V+K  + R G    P+   V  
Sbjct: 162 CESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGVGF 221

Query: 187 EGSDNGLRRSLSLDPSRNMAR--------LSQDRGDGWMEIEMGEFFNENG--GDGMLVC 236
           +G +   ++ +  D S +  +         S+ RGDGWME E+G+FFN+ G  G   +  
Sbjct: 222 KGQEMP-KQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFNDGGLMGFDEVEV 280

Query: 237 SLLEFDSYIAMRGLIIQGIELRPK 260
           S+++  S     G++I+GIE RPK
Sbjct: 281 SIVDVTSPNLKCGVMIEGIEFRPK 304

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NPT8|PP2B1_ARATH F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1

 Score =  174 bits (442), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 109/306 (35%), Positives = 158/306 (51%), Gaps = 57/306 (18%)

Query: 6   ALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSL 65
           ALP +CIS +IS T+PRDAC ++ VS+  +SAA SD  WE FLPS+Y  ++  S +    
Sbjct: 34  ALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANH--- 90

Query: 66  ITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTS 125
              LSKK+++  L  N +++ NG  SF +E  SGKKCYM+ A  L+I   D P  W   +
Sbjct: 91  ---LSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWIT 147

Query: 126 LPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRS-GFERRPVIS-- 182
           +PES+F +VA++ +V WF V+  I   +LS   +Y  Y+VFK A  RS GF+  PV +  
Sbjct: 148 VPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAGV 207

Query: 183 ----------RVYIEGSDNGLRRSLSLDPSRNMARLS----------------------- 209
                      VY E  +   R + S     + A +S                       
Sbjct: 208 GFVGKVATKKSVYFESGNADSRSATSHYSGISYAMVSRAFRMRRPWMQVQREEEEEVEGE 267

Query: 210 ----------QDRGDGWMEIEMGEFFNENGGDG-----MLVCSLLEFDSYIAMRGLIIQG 254
                     ++R DGW E+E+G+F+  NGG G      +  S++E  +     GLIIQG
Sbjct: 268 RERGMNVVGPKERVDGWSEVELGKFYINNGGCGDDGSDEIEISIMETQNGNWKSGLIIQG 327

Query: 255 IELRPK 260
           IE+RP+
Sbjct: 328 IEIRPE 333

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|O80494|P2B15_ARATH F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=2

 Score =  159 bits (403), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/283 (36%), Positives = 142/283 (50%), Gaps = 30/283 (10%)

Query: 5   IALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSS 64
           + LP  C++ I+S TTP D    + VS VFR A DSD  WE FLP+DY  +IS S     
Sbjct: 1   MMLPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHR 60

Query: 65  LITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILT 124
           + +S  KK+LY  LC + I+I+NG   F +E  SGK  Y++ +R LSI  +D+ + W  +
Sbjct: 61  IFSS--KKELYRCLCES-ILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWS 117

Query: 125 SLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPV---- 180
              +SRF E  ++    W  +   I+T  LS   NYGAYL+ K      G +  P     
Sbjct: 118 PRSDSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAETSI 177

Query: 181 --------ISRVYIEGSDN----------GLR--RSLSLDPSRNMARLSQDRGDGWMEIE 220
                   I   Y+   DN          G R  R  + +  R+  R  + R DGWMEIE
Sbjct: 178 KVGNGEKKIKSTYLSCLDNKKQQMERVFYGQREQRMATHEVVRSHRREPEVRDDGWMEIE 237

Query: 221 MGEFFNENG---GDGMLVCSLLEFDSYIAMRGLIIQGIELRPK 260
           +GEF   +G    D  +V SL E   Y    G+ I GIE+RPK
Sbjct: 238 LGEFETGSGEGDDDKEVVMSLTEVKGYQLKGGIAIDGIEVRPK 280

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
118485882	267	unknown [Populus trichocarpa]	0.992	0.973	0.545	4e-72
224053426	243	f-box family protein [Populus trichocarp	0.908	0.979	0.530	1e-67
449487520	268	PREDICTED: putative F-box protein PP2-B1	0.996	0.973	0.494	6e-64
449432438	268	PREDICTED: putative F-box protein PP2-B1	0.996	0.973	0.494	1e-63
449433185	267	PREDICTED: putative F-box protein PP2-B1	0.984	0.966	0.486	2e-61
296088854	287	unnamed protein product [Vitis vinifera]	0.977	0.891	0.469	1e-58
449518583	267	PREDICTED: putative F-box protein PP2-B1	0.992	0.973	0.472	2e-58
225470220	277	PREDICTED: F-box protein PP2-B10-like [V	0.965	0.913	0.450	4e-58
296088859	311	unnamed protein product [Vitis vinifera]	0.965	0.813	0.450	5e-58
255545406	301	conserved hypothetical protein [Ricinus	0.977	0.850	0.450	4e-57

>gi|118485882|gb|ABK94787.1| unknown [Populus trichocarpa]

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 144/264 (54%), Positives = 183/264 (69%), Gaps = 4/264 (1%)

Query: 1   MDITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSV 60
           MD++  LP EC+++IIS T+PRDAC  ++VSR FRSAADSD+ W+ FLPSD+ +IIS+S 
Sbjct: 1   MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSP 60

Query: 61  SDSSL-ITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPY 119
           + SS  +T+LSKK+LYFHLC+NPI++NNG MSFALE   GKKCYM+GARGLSI   D P 
Sbjct: 61  ASSSSQLTALSKKELYFHLCNNPILVNNGIMSFALEKHGGKKCYMIGARGLSITWGDTPD 120

Query: 120 TWILTSLP-ESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERR 178
            W    LP +SRF EVA++  VWW +V+  I+ KI S +  Y AYLVFK  +S  GF+ R
Sbjct: 121 YWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFDER 180

Query: 179 PVISRVYIEGS--DNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVC 236
            V   V  E S  +  L   L + P  +M  L ++R DGWMEIEMGEFF +N  DG +V 
Sbjct: 181 LVELSVNFEESVGEEKLHVFLDVPPDYDMPPLPRERSDGWMEIEMGEFFYDNEDDGSVVA 240

Query: 237 SLLEFDSYIAMRGLIIQGIELRPK 260
            L E D+Y    GLII+GIE RPK
Sbjct: 241 YLREVDNYTTKNGLIIEGIEFRPK 264

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053426|ref|XP_002297813.1| f-box family protein [Populus trichocarpa] gi|222845071|gb|EEE82618.1| f-box family protein [Populus trichocarpa]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 139/262 (53%), Positives = 173/262 (66%), Gaps = 24/262 (9%)

Query: 1   MDITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSV 60
           MD++  LP EC+++IIS T+PRDAC  ++VSR FRSAADSD+ W+ FLPSD+ +IIS+S 
Sbjct: 1   MDMSQVLPEECLAHIISFTSPRDACGSALVSRNFRSAADSDAVWKGFLPSDHVEIISSSP 60

Query: 61  SDSSL-ITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPY 119
           + SS  +T+LSKK+LYFHLC+NPI++NNG MSFALE   GKKCYM+GARGLSI   D P 
Sbjct: 61  ASSSSQLTALSKKELYFHLCNNPILVNNGIMSFALEKHGGKKCYMIGARGLSITWGDTPD 120

Query: 120 TWILTSLP-ESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERR 178
            W    LP +SRF EVA++  VWW +V+  I+ KI S +  Y AYLVFK  +S  GF+ R
Sbjct: 121 YWTWKPLPDQSRFSEVAELRYVWWLDVRGRIDAKIFSPKTTYAAYLVFKLTDSTRGFDER 180

Query: 179 PVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSL 238
            V   V  E S                      R DGWMEIEMGEFF +N  DG +V  L
Sbjct: 181 LVELSVNFEES----------------------RSDGWMEIEMGEFFYDNEDDGSVVAYL 218

Query: 239 LEFDSYIAMRGLIIQGIELRPK 260
            E D+Y    GLII+GIE RPK
Sbjct: 219 REVDNYTTKNGLIIEGIEFRPK 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487520|ref|XP_004157667.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  249 bits (637), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 133/269 (49%), Positives = 174/269 (64%), Gaps = 8/269 (2%)

Query: 1   MDITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSV 60
           MDI   LPAEC+S+I++ T+P+DACR +V S  FRSAADSD+ W  FLPSDY+QIIS + 
Sbjct: 1   MDIN-QLPAECLSSILAFTSPKDACRSAVASPAFRSAADSDALWITFLPSDYRQIISQAS 59

Query: 61  SDSSLITSLS--KKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEP 118
           S S+     S  KK LYF L  + + I +G  SF LE ESGKKCYM+GAR L I   + P
Sbjct: 60  SSSTSSFLNSLSKKALYFRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLDIIWGNSP 119

Query: 119 YTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAE---SRSGF 175
             W   S+P SRF EVA++  VWW  +K  IE + LS +  Y AY VFK  E   SR GF
Sbjct: 120 QYWTWKSIPTSRFREVAELQVVWWLEIKGKIEARSLSPKTKYAAYFVFKLVEDRYSRRGF 179

Query: 176 ERRPVISRVYIEGS--DNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGM 233
           + RPV   V+ EG+  +   R+ + LDP      + ++R DGWME+EMGE FNE G DG 
Sbjct: 180 QIRPVSLEVHFEGAEVEEDGRKRVILDPPEGSLVVCEERSDGWMEVEMGEIFNELGDDGT 239

Query: 234 LVCSLLEFDSYIAMRGLIIQGIELRPKSD 262
           ++  L + D++I+  GLI++GIE+RPK D
Sbjct: 240 IIFHLKQIDNFISKGGLIVEGIEIRPKYD 268

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432438|ref|XP_004134006.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  249 bits (635), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 133/269 (49%), Positives = 173/269 (64%), Gaps = 8/269 (2%)

Query: 1   MDITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSV 60
           MDI   LPAEC+S I++ T+P+DACR +VVS  FRSAADSD+ W  FLPSDY+QIIS + 
Sbjct: 1   MDIN-QLPAECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQAS 59

Query: 61  SDSSLITSLS--KKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEP 118
           S S+     S  KK LY  L  + + I +G  SF LE ESGKKCYM+GAR L I   + P
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLDIIWGNSP 119

Query: 119 YTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAE---SRSGF 175
             W   S+P SRF EVA++  VWW  +K  IE + LS +  Y AY VFK  E   SR GF
Sbjct: 120 QYWTWKSIPTSRFREVAELQVVWWLEIKGKIEARSLSPKTKYAAYFVFKLVEDRYSRRGF 179

Query: 176 ERRPVISRVYIEGS--DNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGM 233
           + RPV   V+ EG+  +   R+ + LDP      + ++R DGWME+EMGE FNE G DG 
Sbjct: 180 QIRPVSLEVHFEGAEVEEDGRKRVILDPPEGSLVVCEERSDGWMEVEMGEIFNELGDDGT 239

Query: 234 LVCSLLEFDSYIAMRGLIIQGIELRPKSD 262
           ++  L + D++I+  GLI++GIE+RPK D
Sbjct: 240 IIFHLKQIDNFISKGGLIVEGIEIRPKYD 268

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433185|ref|XP_004134378.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/267 (48%), Positives = 168/267 (62%), Gaps = 9/267 (3%)

Query: 1   MDITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSV 60
           MDI   LPAECIS+I++ T+P+DACR +V S  FRSAADSD+ W  FLPSDY+QIIS + 
Sbjct: 1   MDIN-QLPAECISSILAFTSPKDACRSAVASPAFRSAADSDAIWTTFLPSDYRQIISQAS 59

Query: 61  SDSSLITSLS--KKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEP 118
           S S+     S  KK LY  L  + + I +G  SF LE ESGKKCYM+GAR L I     P
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSSFVLEKESGKKCYMIGARDLEIVWGSSP 119

Query: 119 YTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAE---SRSGF 175
             W   S+P SRF EVA++  VWW  +K  IE + LS +  Y AY VFKF E      GF
Sbjct: 120 AYWTWQSIPTSRFSEVAELQYVWWLEIKGKIEGRNLSPKTKYAAYFVFKFKEGDFQHDGF 179

Query: 176 ERRPVISRVYIEGSDNGL--RRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGM 233
             +PV   VY EG + G    + + LDP      + ++R DGWME+EMGEFFNE G DG+
Sbjct: 180 GTKPVSLEVYFEGEEVGEDGTKMVLLDPPEGSPVVCKERSDGWMEVEMGEFFNELGDDGI 239

Query: 234 LVCSLLEFDSYIAMRGLIIQGIELRPK 260
           ++  L++ D  +   GLI++G+E+RPK
Sbjct: 240 IIFHLMQIDR-LRKGGLIVEGVEIRPK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088854|emb|CBI38318.3| unnamed protein product [Vitis vinifera]

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 125/266 (46%), Positives = 164/266 (61%), Gaps = 10/266 (3%)

Query: 6   ALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSL 65
           +LP  CI+++++LT+PRD CR+S V+ VF SAA+SD+ WE FLP+DY++II+ S   SS 
Sbjct: 22  SLPEGCIADVLALTSPRDVCRMSAVASVFLSAAESDALWERFLPADYREIIARSSESSSW 81

Query: 66  ITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTS 125
               SKK+LYF LC  P++I+ G  SF LE  SGKKCYM+ +R L+I   D P  W  TS
Sbjct: 82  RHFSSKKELYFTLCDYPLLIDEGKKSFWLEKRSGKKCYMLASRELTIIWGDTPGYWEWTS 141

Query: 126 LPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVY 185
           LPESRFPEVA + +V WF ++  I T +LS R NY AYLVF    S  GFE  PV S + 
Sbjct: 142 LPESRFPEVAYLQAVCWFEIRGKINTCMLSPRTNYAAYLVFHAGRSH-GFEDVPVESSIE 200

Query: 186 IEGSDNGLRRSLSLDPSRNMARLS---------QDRGDGWMEIEMGEFFNENGGDGMLVC 236
           I G++   R        +N    S         + R D W EIE+GEFF E G D  L  
Sbjct: 201 IVGNETTTRVIYLARYRKNEEPTSSIRSDLPYPKKREDSWFEIELGEFFIEGGEDTELEI 260

Query: 237 SLLEFDSYIAMRGLIIQGIELRPKSD 262
           +L+E  +     GLI++GIE+RPK D
Sbjct: 261 TLMEVKAGHWKDGLIVEGIEIRPKGD 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518583|ref|XP_004166316.1| PREDICTED: putative F-box protein PP2-B12-like [Cucumis sativus]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 127/269 (47%), Positives = 166/269 (61%), Gaps = 9/269 (3%)

Query: 1   MDITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSV 60
           MDI   LPAEC+S I++ T+P+DACR +VVS  FRSAADSD+ W  FLPSDY+QIIS + 
Sbjct: 1   MDIN-QLPAECLSCILAFTSPKDACRSAVVSPAFRSAADSDALWTTFLPSDYRQIISQAS 59

Query: 61  SDSSLITSLS--KKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEP 118
           S S+     S  KK LY  L  + + I +G   F LE  SGKKCYM+GAR L I     P
Sbjct: 60  SSSTSSFLNSLSKKALYLRLSDHLLFIGSGNSGFVLEKGSGKKCYMIGARDLEIVWGSSP 119

Query: 119 YTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAES---RSGF 175
             W   S+P SRF EVA++  VWW  +K  IE + LS +  Y AY VFK  E    R  F
Sbjct: 120 EYWTWQSIPTSRFSEVAELQYVWWLEIKGKIEGRNLSPKTKYAAYFVFKLVEDNFCRHVF 179

Query: 176 ERRPVISRVYIEGS--DNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGM 233
           E  PV   V+ EG+  +   R+ + LDP    + +  +R DGWME+EMGEFFNE G DG 
Sbjct: 180 ETTPVSLEVHFEGAEVEEDRRKRVILDPLEGSSVVCVERSDGWMEVEMGEFFNECGDDGS 239

Query: 234 LVCSLLEFDSYIAMRGLIIQGIELRPKSD 262
           ++  L++ D  +   GLI++G+E+RPK +
Sbjct: 240 IIFHLMQIDR-LRKGGLIVEGVEIRPKYE 267

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470220|ref|XP_002270580.1| PREDICTED: F-box protein PP2-B10-like [Vitis vinifera]

 Score =  230 bits (587), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 115/255 (45%), Positives = 168/255 (65%), Gaps = 2/255 (0%)

Query: 6   ALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSL 65
           ALP +CI+ I++ T+ RDACR+S VS  F SAA+SD+ WE FLP+DY++II  S   S+ 
Sbjct: 22  ALPEDCIAGILARTSIRDACRMSTVSPEFLSAAESDALWETFLPADYREIIGRSSESSAR 81

Query: 66  ITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTS 125
               SKK+L+F LC++P++I+ G  SF L+ ESGKKCYM+ AR L+I  ++ P  W   S
Sbjct: 82  QDFSSKKELFFRLCNSPLLIDGGKKSFWLDKESGKKCYMIAARELTIIWSETPRYWTWIS 141

Query: 126 LPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVY 185
            P+SRF EVA +  VWWF +K  + T +LS   NY AYL+F+  +   GFE  P+ S + 
Sbjct: 142 PPQSRFTEVANLKIVWWFVIKGKMNTCMLSPCTNYAAYLIFQRNDIFDGFEDNPIESSIG 201

Query: 186 IEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLEFDSYI 245
           + G +   ++ + LDP  +++  +  R DGW E+E+GEFFNE      L  S++E +++I
Sbjct: 202 VTGGETA-KKVIYLDPEHDISP-NPTRIDGWYEVELGEFFNEGRESVELEMSIMEVNTFI 259

Query: 246 AMRGLIIQGIELRPK 260
              GL+I+GIE+RPK
Sbjct: 260 GKSGLLIEGIEIRPK 274

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088859|emb|CBI38323.3| unnamed protein product [Vitis vinifera]

 Score =  230 bits (586), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 115/255 (45%), Positives = 168/255 (65%), Gaps = 2/255 (0%)

Query: 6   ALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSL 65
           ALP +CI+ I++ T+ RDACR+S VS  F SAA+SD+ WE FLP+DY++II  S   S+ 
Sbjct: 56  ALPEDCIAGILARTSIRDACRMSTVSPEFLSAAESDALWETFLPADYREIIGRSSESSAR 115

Query: 66  ITSLSKKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTS 125
               SKK+L+F LC++P++I+ G  SF L+ ESGKKCYM+ AR L+I  ++ P  W   S
Sbjct: 116 QDFSSKKELFFRLCNSPLLIDGGKKSFWLDKESGKKCYMIAARELTIIWSETPRYWTWIS 175

Query: 126 LPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVY 185
            P+SRF EVA +  VWWF +K  + T +LS   NY AYL+F+  +   GFE  P+ S + 
Sbjct: 176 PPQSRFTEVANLKIVWWFVIKGKMNTCMLSPCTNYAAYLIFQRNDIFDGFEDNPIESSIG 235

Query: 186 IEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLEFDSYI 245
           + G +   ++ + LDP  +++  +  R DGW E+E+GEFFNE      L  S++E +++I
Sbjct: 236 VTGGETA-KKVIYLDPEHDISP-NPTRIDGWYEVELGEFFNEGRESVELEMSIMEVNTFI 293

Query: 246 AMRGLIIQGIELRPK 260
              GL+I+GIE+RPK
Sbjct: 294 GKSGLLIEGIEIRPK 308

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545406|ref|XP_002513763.1| conserved hypothetical protein [Ricinus communis] gi|223546849|gb|EEF48346.1| conserved hypothetical protein [Ricinus communis]

 Score =  227 bits (579), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 131/291 (45%), Positives = 166/291 (57%), Gaps = 35/291 (12%)

Query: 5   IALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSS 64
           ++LP  CI++++S T P DACRLS VS  FR AA+SD+ WE FLP DY  IIS S SDS 
Sbjct: 13  MSLPEGCIADVVSFTGPFDACRLSTVSSTFRDAANSDTVWEKFLPQDYHSIISRS-SDSF 71

Query: 65  LITSLS-KKDLYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWIL 123
           L+   S KK LYF LC NPI+I++G  SFALE  SGKKCYM+ AR L I  +D P  W  
Sbjct: 72  LLDRFSSKKQLYFSLCDNPILIDDGKKSFALEKWSGKKCYMLSARDLKIVWSDTPTYWRW 131

Query: 124 TSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISR 183
             LP+SRFPEVA++ SV W  + A I   +LS    Y AY VFK      GFE +P  + 
Sbjct: 132 ICLPDSRFPEVAELISVCWLEISARINISMLSPSTLYTAYFVFKSTTGAYGFEYQPAEAV 191

Query: 184 VYIEGSDNGLRRSLSLDPSR----------------NMARL----------------SQD 211
           V + GS+   + ++ LD  R                N  R+                 ++
Sbjct: 192 VGLVGSET-CKHNVYLDAERGRRRRSQIVRRRIGLLNRGRIFGLQASLRNGESDCKYPKE 250

Query: 212 RGDGWMEIEMGEFFNENGGDGMLVCSLLEFDSYIAMRGLIIQGIELRPKSD 262
           RGDGW+EIE+GEFF + G DG L  S+LE        GL +QGIE+RPK D
Sbjct: 251 RGDGWLEIELGEFFKKKGEDGELELSVLEVKGGHWKGGLAVQGIEIRPKVD 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
TAIR|locus:2056196	310	PP2-B2 "phloem protein 2-B2" [	0.938	0.793	0.409	2.4e-44
TAIR|locus:2016349	257	PP2-B11 "phloem protein 2-B11"	0.938	0.957	0.409	8.1e-44
TAIR|locus:2153954	251	PP2-B12 "phloem protein 2-B12"	0.919	0.960	0.414	2.8e-43
TAIR|locus:2056231	272	PP2-B10 "phloem protein 2-B10"	0.938	0.904	0.394	5.7e-43
TAIR|locus:2056181	320	MEE66 "AT2G02240" [Arabidopsis	0.938	0.768	0.396	1.2e-42
TAIR|locus:2056191	336	PP2-B1 "phloem protein 2-B1" [	0.675	0.526	0.407	3.2e-41
TAIR|locus:2056201	305	PP2-B8 "phloem protein 2-B8" [	0.950	0.816	0.359	1.5e-37
TAIR|locus:2056166	307	PP2-B6 "phloem protein 2-B6" [	0.942	0.804	0.359	1.9e-37
TAIR|locus:505006110	289	PP2-B15 "phloem protein 2-B15"	0.759	0.688	0.331	1.7e-34
TAIR|locus:2056271	284	PP2-B5 "phloem protein 2-B5" [	0.904	0.834	0.366	1.2e-33

TAIR|locus:2056196 PP2-B2 "phloem protein 2-B2" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 107/261 (40%), Positives = 146/261 (55%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYXXXXXXXXXXXXXX 66
             LP +CISNIIS T+PRDAC  + VS+ F SA +SDS W+ FLPSDY              
Sbjct:    50 LPEDCISNIISFTSPRDACVAASVSKTFESAVNSDSVWDKFLPSDYSSLVPPSRVFSSKK 109

Query:    67 XXXXXXXXYFHLCHNPIIINNGTMSFALEPESGKKCYMVGAR-GLSIAGADEPYTWILTS 125
                     YF +C NP+++ +G  SF LE E+GKKC+M+  +  + I     P  W   S
Sbjct:   110 EL------YFAICDNPVLVEDGGKSFWLEKENGKKCFMLSPKKSMWITWVSTPQYWRWIS 163

Query:   126 LPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVY 185
             +PE+RF EV ++ +V WF V+  + TK LS    Y AY+VFK           PV + V 
Sbjct:   164 IPEARFEEVPELLNVCWFEVRGGMNTKELSPGTRYSAYIVFKTKNGCPNLGDVPVEATVG 223

Query:   186 IEGSDNGLRRSLSLDPS-RNMARLSQD------RGDGWMEIEMGEFFNENGGDGMLVCSL 238
             + G ++  R    + PS +   R ++D      R DGWME E+G+FFNE+G D ++  S+
Sbjct:   224 LVGQESSQRHIYFVGPSDQRRDRETRDVTRPTKRKDGWMEAELGQFFNESGCD-VVDTSI 282

Query:   239 LEFDSYIAMRGLIIQGIELRP 259
             LE  +    RGLIIQGIE RP
Sbjct:   283 LEIKTPYWKRGLIIQGIEFRP 303

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2016349 PP2-B11 "phloem protein 2-B11" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 106/259 (40%), Positives = 143/259 (55%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYXXXXXXXXXXXXXX 66
             LP +CI+ I+SLTTP D CRLS VS +FRSAA SD  W +FLP+D+              
Sbjct:     4 LPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFPAGFAAPAGLPTRK 63

Query:    67 XXXXXXXXYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSL 126
                     +F L  NP++IN   +SF+LE +SG KCYM+ AR L+I    E   W   SL
Sbjct:    64 QL------FFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISL 117

Query:   127 PESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYI 186
             P +RF EVA++  VWW  +   I   +LS    Y AY VFK+  S  GF R+PV + + +
Sbjct:   118 PNTRFGEVAELIMVWWLEITGKINITLLSDDTLYAAYFVFKWNHSPYGF-RQPVETSLVL 176

Query:   187 ---EGSDNGLRRSL-SL--DPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLE 240
                E +DN ++ S+ SL  D      +    R DGW E+E+G+FF   G  G +  SL E
Sbjct:   177 ADTESTDNVVQPSMISLMQDSGGEEGQSPVLRRDGWYEVELGQFFKRRGDLGEIEMSLKE 236

Query:   241 FDSYIAMRGLIIQGIELRP 259
                    +GLI+ GIE+RP
Sbjct:   237 TKGPYEKKGLIVYGIEIRP 255

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2153954 PP2-B12 "phloem protein 2-B12" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 106/256 (41%), Positives = 143/256 (55%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYXXXXXXXXXXXXXX 66
             LP ECI+ +IS T+P DACR+S VS++ RSAADS++ WE FLPSDY              
Sbjct:     6 LPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYIDNSLSRFSNK 65

Query:    67 XXXXXXXXYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSL 126
                     +   C +P++I +G  SF +E  SGKKC+M+ AR L I   D P  WI  S+
Sbjct:    66 QL------FLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSI 119

Query:   127 PESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRS-GFERRPVISRVY 185
             P+SRF EVA +  V WF ++  I T +LS   NY AYLVFK  E  S GFE  P      
Sbjct:   120 PDSRFEEVAGLLMVCWFEIRGKISTSLLSKATNYSAYLVFKEQEMGSFGFESLP------ 173

Query:   186 IEGSDNGLRRSLSLDPSRNMARLSQD-RGDGWMEIEMGEFFNENGGDGMLVCSLLEFDSY 244
             +E S    R  +  +    +   +Q+ R DGW+EIE+GE++     D  +  S+LE    
Sbjct:   174 LEVSFRSTRTEVYNNRRVFLKSGTQESREDGWLEIELGEYY-VGFDDEEIEMSVLETREG 232

Query:   245 IAMRGLIIQGIELRPK 260
                 G+I+QGIE+RPK
Sbjct:   233 GWKGGIIVQGIEIRPK 248

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056231 PP2-B10 "phloem protein 2-B10" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 103/261 (39%), Positives = 139/261 (53%)

Query:     6 ALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYXXXXXXXXXXXXX 65
             + P +CIS IIS T PRDAC  + VS+ F S   SD  WE FLP+DY             
Sbjct:    16 SFPEDCISYIISFTNPRDACVAATVSKTFESTVKSDIIWEKFLPADYESLIPPSRVFSSK 75

Query:    66 XXXXXXXXXYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTS 125
                      YF LC++P++ ++   S  LE  SGK+C M+ A  LSI   D P  W    
Sbjct:    76 KEL------YFSLCNDPVLFDDDKKSVWLEKASGKRCLMLSAMNLSIIWGDNPQYWQWIP 129

Query:   126 LPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVY 185
             +PESRF +VAK+  V WF ++    T++LS R  Y AY+VFK  +   GF+   + + V 
Sbjct:   130 IPESRFEKVAKLRDVCWFEIRGRTNTRVLSPRTRYSAYIVFKGVDKCYGFQNVAIEAAVG 189

Query:   186 IEGSDNGLRRSLSLDPS-----RNMARLSQDRGDGWMEIEMGEFFNENG--GDGMLVCSL 238
             + G +   RR +    +     RN+ +  Q R DGWMEIE+GEFFN+ G   +  +  S 
Sbjct:   190 VVGQEPS-RRLICFSEAIRRGRRNVVKPKQ-REDGWMEIELGEFFNDGGIMDNDEIEMSA 247

Query:   239 LEFDSYIAMRGLIIQGIELRP 259
             LE        GLIIQGIE+RP
Sbjct:   248 LETKQLNRKCGLIIQGIEIRP 268

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056181 MEE66 "AT2G02240" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 103/260 (39%), Positives = 138/260 (53%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYXXXXXXXXXXXXXX 66
             LP +CISNIIS T+PRDAC  + VS+ F SA  SD  W+ FLP +Y              
Sbjct:    64 LPEDCISNIISFTSPRDACVAASVSKTFESAVSSDCVWDKFLPPEYESLVSRSRVFASKK 123

Query:    67 XXXXXXXXYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSL 126
                     YF LCHNP++I +G  SF LE  SGK+C M+ ++ L I     P  W   S+
Sbjct:   124 EL------YFALCHNPVLIEDGKKSFWLEKASGKRCIMLSSKELWITWGSSPEYWQWISI 177

Query:   127 PESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYI 186
             PESRF ++A++  V WF ++     ++LS    Y AY+VFK  +   G    PV   + +
Sbjct:   178 PESRFNKIAELLDVCWFEIRGKTSARVLSPGTRYSAYIVFKTKDRCPGLGHLPVEVGLGL 237

Query:   187 EGSDNGLRRSLSLDP-SRNMARLSQD------RGDGWMEIEMGEFFNENGGDGMLVCSLL 239
              G ++  R    + P  R   R ++D      R DGWME E+GEFFNE   D  +  S++
Sbjct:   238 VGQESSKRFIYFIGPRDRRGRRETRDVTKPDQREDGWMEAELGEFFNEERCDE-IEFSVI 296

Query:   240 EFDSYIAMRGLIIQGIELRP 259
             E  S     GLIIQGIE RP
Sbjct:   297 EIKSPSWKSGLIIQGIEFRP 316

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2056191 PP2-B1 "phloem protein 2-B1" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 3.2e-41, Sum P(2) = 3.2e-41
 Identities = 75/184 (40%), Positives = 103/184 (55%)

Query:     6 ALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYXXXXXXXXXXXXX 65
             ALP +CIS +IS T+PRDAC ++ VS+  +SAA SD  WE FLPS+Y             
Sbjct:    34 ALPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLVLQSANHLSK 93

Query:    66 XXXXXXXXXYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTS 125
                      +  L  N +++ NG  SF +E  SGKKCYM+ A  L+I   D P  W   +
Sbjct:    94 KEI------FLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWIT 147

Query:   126 LPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRS-GFERRPVISRV 184
             +PES+F +VA++ +V WF V+  I   +LS   +Y  Y+VFK A  RS GF+  PV + V
Sbjct:   148 VPESKFEKVAELRNVCWFEVRGKISCGMLSKGTHYSVYVVFKTANGRSYGFDLVPVEAGV 207

Query:   185 YIEG 188
                G
Sbjct:   208 GFVG 211

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056201 PP2-B8 "phloem protein 2-B8" [Arabidopsis thaliana (taxid:3702)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 96/267 (35%), Positives = 137/267 (51%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYXXXXXXXXXXXXXX 66
             LP EC+S I+S T+P+DAC L+ VS+ F SA  SD  WE F+P +Y              
Sbjct:    39 LPEECVSIIVSFTSPQDACVLASVSKTFASAVKSDIVWEKFIPPEYESLISQSRAFKFLS 98

Query:    67 XXXXXXXXYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSL 126
                     YF LC   ++I++G  S  +E  + K+C M+ A  L+IA  + P +W     
Sbjct:    99 KKEL----YFALCDKSVLIDDGKKSLWIEKANAKRCIMISAMNLAIAWGNSPQSWRWIPD 154

Query:   127 PESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYI 186
             P++RF  VA++  V  F ++  I ++++S +  Y AY+V+K      GFE   V   V +
Sbjct:   155 PQARFETVAELLEVCLFEIRGRINSRVISPKTRYSAYIVYKKLNICYGFENVAVEVVVGV 214

Query:   187 EGSD--NGLRRSLSLDPSRNMARLSQDRG----------DGWMEIEMGEFFNENG--GDG 232
              G D     RR +  D + +     +DRG          DGWMEI++GEFFNE G   D 
Sbjct:   215 VGQDLEESCRRYICFDETMDEQFRRRDRGKNLVKPERRKDGWMEIKIGEFFNEGGLLNDD 274

Query:   233 MLVCSLLEFDSYIAMRGLIIQGIELRP 259
              +    LE       RGLIIQGIE+RP
Sbjct:   275 EIEMVALEAKQRHWKRGLIIQGIEIRP 301

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056166 PP2-B6 "phloem protein 2-B6" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 95/264 (35%), Positives = 140/264 (53%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYXXXXXXXXXXXXXX 66
             LP +CISNIIS T+PRD C  + VS+ F  A   DS WE FLPS+Y              
Sbjct:    48 LPEDCISNIISFTSPRDVCVSASVSKSFAHAVQCDSIWEKFLPSEYESLIPPWRVFSSKK 107

Query:    67 XXXXXXXXYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSL 126
                     YF LC++P+++ +G  SF LE  SGKKC ++ A+ L I G + P  W    L
Sbjct:   108 DL------YFTLCYDPVLVEDGKKSFWLETASGKKCVLLAAKELWITGGNNPEYWQWIEL 161

Query:   127 PESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYI 186
              ES F +V ++ +   F +   + T+ILSL  +Y  Y+V+K  + R G    P+   V  
Sbjct:   162 CESSFEKVPELLNNRSFQMGGSMSTQILSLGTHYSVYIVYKIKDERHGLRDLPIQVGVGF 221

Query:   187 EGSDNGLRRSLSLDPSRNMAR--------LSQDRGDGWMEIEMGEFFNENG--GDGMLVC 236
             +G +   ++ +  D S +  +         S+ RGDGWME E+G+FFN+ G  G   +  
Sbjct:   222 KGQEMP-KQFICFDESTDKTKEWPKKKLMKSKKRGDGWMEAEIGDFFNDGGLMGFDEVEV 280

Query:   237 SLLEFDSYIAMRGLIIQGIELRPK 260
             S+++  S     G++I+GIE RPK
Sbjct:   281 SIVDVTSPNLKCGVMIEGIEFRPK 304

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:505006110 PP2-B15 "phloem protein 2-B15" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 68/205 (33%), Positives = 100/205 (48%)

Query:     7 LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYXXXXXXXXXXXXXX 66
             LP  C++ I+S TTP D    + VS VFR A DSD  WE FLP+DY              
Sbjct:     3 LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRIF 62

Query:    67 XXXXXXXXYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILTSL 126
                     Y  LC + I+I+NG   F +E  SGK  Y++ +R LSI  +D+ + W  +  
Sbjct:    63 SSKKEL--YRCLCES-ILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPR 119

Query:   127 PESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYI 186
              +SRF E  ++    W  +   I+T  LS   NYGAYL+ K      G +  P  + + +
Sbjct:   120 SDSRFSEGVQLIMTDWLEIIGKIQTGALSPNTNYGAYLIMKVTSRAYGLDLVPAETSIKV 179

Query:   187 EGSDNGLRRS-LS-LDPSRN-MARL 208
                +  ++ + LS LD  +  M R+
Sbjct:   180 GNGEKKIKSTYLSCLDNKKQQMERV 204

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

TAIR|locus:2056271 PP2-B5 "phloem protein 2-B5" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 96/262 (36%), Positives = 141/262 (53%)

Query:     7 LPAECISNIISLT-TPRDACRLSVVSRVFRSAADSDSAWENFLPS-DYXXXXXXXXXXXX 64
             LP +C++ I S T TPRDA   ++VS+ F    +SDS WE FLP  DY            
Sbjct:    37 LPDDCLAIISSFTSTPRDAFLAALVSKSFGLQFNSDSVWEKFLPPPDYVSLLPKSRVFSS 96

Query:    65 XXXXXXXXXXYFHLCHNPIIINNGTMSFALEPESGKKCYMVGARGLSIAGADEPYTWILT 124
                       YF LC +P   +NG MSF L+  SGKKC M+ A+ L I+    P  W   
Sbjct:    97 KKEL------YFALC-DPFPNHNGKMSFRLDKASGKKCVMLSAKKLLISRVVNPKYWKWI 149

Query:   125 SLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERRPVISRV 184
             S+PESRF EV ++ ++  F+++ ++ T+I+S   +Y AY+V+      +GF+  P+ + V
Sbjct:   150 SIPESRFDEVPELLNIDSFDIRGVLNTRIISPGTHYSAYIVYTKTSHFNGFQTSPIQAGV 209

Query:   185 YIEGSDNGLRRSLSLDPSRNMARL-SQDRGDGWMEIEMGEFFNENG--GDGMLVCSLLEF 241
                    G +R      S+   R  S+ R DGWME ++G+F+NE G  G  ++  S+++ 
Sbjct:   210 -------GFQRH---GMSKTFIRFDSKKRQDGWMEAKIGDFYNEGGLIGFNLIEVSVVDV 259

Query:   242 DSYIAMR---GLIIQGIELRPK 260
               Y  M    GLII+GIE RPK
Sbjct:   260 ARYPHMNMKSGLIIEGIEFRPK 281

GO:0005634 "nucleus" evidence=ISM

GO:0030246 "carbohydrate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	262
pfam14299	154	pfam14299, PP2, Phloem protein 2	4e-60
pfam12937	47	pfam12937, F-box-like, F-box-like	8e-05
pfam00646	48	pfam00646, F-box, F-box domain	2e-04
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	4e-04

>gnl|CDD|222661 pfam14299, PP2, Phloem protein 2

 Score =  187 bits (476), Expect = 4e-60
 Identities = 73/162 (45%), Positives = 92/162 (56%), Gaps = 8/162 (4%)

Query: 99  GKKCYMVGARGLSIAGADEPYTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRA 158
           GKKCYM+ AR LSI   D+P  W    LPESRF EVA++  V W  ++  I T++LS   
Sbjct: 1   GKKCYMLSARALSITWGDDPRYWRWIPLPESRFSEVAELLDVCWLEIRGKINTRMLSPGT 60

Query: 159 NYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWME 218
            Y AYLVFK A+   G++ +PV     +   D    R            L + RGDGWME
Sbjct: 61  TYSAYLVFKLADRAYGWDEKPV--EFSVSVPDGQKSR------QERYVCLPEKRGDGWME 112

Query: 219 IEMGEFFNENGGDGMLVCSLLEFDSYIAMRGLIIQGIELRPK 260
           IE+GEFFNE G DG +  S+ E D      GLI+ GIE+RPK
Sbjct: 113 IEVGEFFNEGGEDGEVEFSMREVDGGHWKGGLIVDGIEIRPK 154

Phloem protein 2 (PP2) is one of the most abundant and enigmatic proteins in the phloem sap. PP2 is translocated in the assimilate stream where its lectin activity or RNA-binding properties can exert effects over long distances. Length = 154

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 39.0 bits (92), Expect = 8e-05
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 7  LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENF 47
          LP E +  I S   PRD  RL++V R +R  A  DS W   
Sbjct: 4  LPDEILLQIFSYLDPRDLLRLALVCRRWRELASDDSLWRRL 44

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 17/42 (40%), Positives = 25/42 (59%)

Query: 7  LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFL 48
          LP + +  I+S   P+D  RLS+VS+ +RS  DS   W+  L
Sbjct: 6  LPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRL 47

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 36.6 bits (86), Expect = 4e-04
 Identities = 17/41 (41%), Positives = 21/41 (51%)

Query: 7  LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENF 47
          LP E +  I+S   P+D  RL  VSR +RS  DS   W   
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
PF14299	154	PP2: Phloem protein 2	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.72
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.39
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.34
KOG2997	366	consensus F-box protein FBX9 [General function pre	91.8
PF06881	109	Elongin_A: RNA polymerase II transcription factor	90.97
KOG3926	332	consensus F-box proteins [Amino acid transport and	88.38
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	85.48
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	84.09
PF02018	131	CBM_4_9: Carbohydrate binding domain; InterPro: IP	83.01

>PF14299 PP2: Phloem protein 2

Probab=100.00  E-value=1e-66  Score=438.84  Aligned_cols=152  Identities=46%  Similarity=0.838  Sum_probs=145.2

Q ss_pred             CCeeEEeecccceeeecCCCCceEEeeCCCCccccceEEeeeeEEEEEEEEeccccCCCceeEEEEEEEeccccCCCCcc
Q 024822           99 GKKCYMVGARGLSIAGADEPYTWILTSLPESRFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESRSGFERR  178 (262)
Q Consensus        99 g~kCymlsaR~L~ItWgd~~~yW~W~~~~~Srf~eVAeL~~VcWleI~G~i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~  178 (262)
                      |+||||||||+|+|+|||||+||+|+++|+|||.|||||++||||||+|+|++++|||+|+|+||||||+++++|||+..
T Consensus         1 G~~cymlsaR~L~I~Wg~~~~yW~w~~~~~srf~evAeL~~V~WLeI~G~i~~~~Lsp~t~Y~vy~v~kl~~~~~Gw~~~   80 (154)
T PF14299_consen    1 GKKCYMLSARALSITWGDDPRYWKWIPLPDSRFSEVAELLQVCWLEIRGKINTRMLSPGTTYAVYFVFKLKDDAYGWDSP   80 (154)
T ss_pred             CCEEEEEEhhhCEEecCCCCcceeeccCCcccceeeeEEEEEEEEEEEEEEEceEcCCCCEEEEEEEEEecCCCCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CEEEEEEEecCCCc--eeEEEeccCCccccccccccCCCeEEEEeeeEEecCCCccEEEEEEEEEecCcccccEEEEEEE
Q 024822          179 PVISRVYIEGSDNG--LRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDGMLVCSLLEFDSYIAMRGLIIQGIE  256 (262)
Q Consensus       179 pv~~~v~~~~~~~~--~~~~v~l~~~~~~~~~P~~r~dgW~Eie~GeF~~~~~~~~ev~fsl~e~~~~~wK~GLiv~Gie  256 (262)
                      ||+++|++++ ++.  +.+.+++         |++|+|||||||+|||+++++++++|+|+|+|+++++||+||||+|||
T Consensus        81 pv~~~v~~~~-~~~~~~~~~~~~---------~~~r~dgW~Eie~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~Gie  150 (154)
T PF14299_consen   81 PVEFSVKVPD-GEKYEQERKVCL---------PKERGDGWMEIELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIE  150 (154)
T ss_pred             CEEEEEEeCC-CccccceeeEEc---------CCCCCCCEEEEEcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEE
Confidence            9999999988 554  5567776         678899999999999999998999999999999999999999999999


Q ss_pred             EEec
Q 024822          257 LRPK  260 (262)
Q Consensus       257 IRPk  260 (262)
                      ||||
T Consensus       151 IRPK  154 (154)
T PF14299_consen  151 IRPK  154 (154)
T ss_pred             EecC
Confidence            9998

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.72  E-value=9.8e-09  Score=69.26  Aligned_cols=45  Identities=38%  Similarity=0.624  Sum_probs=40.1

Q ss_pred             cccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCC
Q 024822            4 TIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFL   48 (262)
Q Consensus         4 ~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fL   48 (262)
                      +.+||+|.+..|+++++|.|.+++++||+.|+.++.++.+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~   45 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWRRLC   45 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhhhhc
Confidence            368999999999999999999999999999999999999998764

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.39  E-value=1.2e-07  Score=63.70  Aligned_cols=44  Identities=39%  Similarity=0.642  Sum_probs=38.6

Q ss_pred             cccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccC
Q 024822            4 TIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENF   47 (262)
Q Consensus         4 ~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f   47 (262)
                      +.+||++++.+|++++++.|.++++.||+.|+.+++++..|.++
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~   46 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKI   46 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHH
Confidence            56899999999999999999999999999999999999999765

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.34  E-value=4.9e-07  Score=58.18  Aligned_cols=40  Identities=43%  Similarity=0.633  Sum_probs=38.6

Q ss_pred             ccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhcc
Q 024822            7 LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWEN   46 (262)
Q Consensus         7 Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~   46 (262)
                      ||++++..|+++++|.|.+++++||+.|+.+.+++.+|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            7999999999999999999999999999999999999975

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=91.80  E-value=0.069  Score=50.30  Aligned_cols=82  Identities=16%  Similarity=0.161  Sum_probs=57.1

Q ss_pred             cccccHHHHHHHHhc-----CChhhHhhhhhccHHHHhhhcCchhhccCCCCchhhhhcccCCCccc-ccCCCHHHHHHh
Q 024822            4 TIALPAECISNIISL-----TTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSL-ITSLSKKDLYFH   77 (262)
Q Consensus         4 ~~~Lpe~cia~ils~-----t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~dy~~Il~~~~~~~~~-~~~~SkKely~~   77 (262)
                      +..||++.+-.|+..     ++-++.-++|+|++.|+-+|..|.+|+.+|=.-|+.-+....+-... .-..|.+++|..
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~  186 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLE  186 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhh
Confidence            368999998888765     45599999999999999999999999999887666433322211100 013567888876


Q ss_pred             hccCCeEecC
Q 024822           78 LCHNPIIINN   87 (262)
Q Consensus        78 L~~~pvlld~   87 (262)
                      --  -|.+||
T Consensus       187 Rp--RvrFdG  194 (366)
T KOG2997|consen  187 RP--RVRFDG  194 (366)
T ss_pred             Cc--ceeecc
Confidence            32  355543

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=90.97  E-value=0.14  Score=40.55  Aligned_cols=73  Identities=16%  Similarity=0.284  Sum_probs=57.0

Q ss_pred             cccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCCCchhhhhcccCCCcccccCCCHHHHHHhhcc
Q 024822            2 DITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSLITSLSKKDLYFHLCH   80 (262)
Q Consensus         2 ~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~dy~~Il~~~~~~~~~~~~~SkKely~~L~~   80 (262)
                      +-++++|-..|.-||...+|....++-.-|+.+  +-++|.+|.+|+=.||..-..... +.   ...|-+++|.++.+
T Consensus         2 ~dvG~~py~ll~piL~~~~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~~-~~---~~~~Wr~~Y~~~~~   74 (109)
T PF06881_consen    2 EDVGDVPYHLLRPILEKCSPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQK-PK---EPESWRELYEKLKK   74 (109)
T ss_pred             CccCCCCHHHHHHHHccCCHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhccc-cc---ccchHHHHHHHHHH
Confidence            346789999999999999999999999988765  456999999999999975222211 21   23588999999864

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=88.38  E-value=0.23  Score=45.89  Aligned_cols=75  Identities=21%  Similarity=0.328  Sum_probs=53.9

Q ss_pred             ccccccHHHHHHHHhcCC-hhhHhhhhhccHHHHhhhcCchhhccCCCCchh--hhhcccCCCcccccCCCHHHHHHhhc
Q 024822            3 ITIALPAECISNIISLTT-PRDACRLSVVSRVFRSAADSDSAWENFLPSDYK--QIISNSVSDSSLITSLSKKDLYFHLC   79 (262)
Q Consensus         3 ~~~~Lpe~cia~ils~t~-P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~dy~--~Il~~~~~~~~~~~~~SkKely~~L~   79 (262)
                      .+-|||++|+..||-+++ -+|.--+|.|-.++...++.+-+|.+.+--.|.  +|-......  .....-.|++|++|-
T Consensus       201 tl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~~~l~l~--k~~q~dWkqmyf~L~  278 (332)
T KOG3926|consen  201 TLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIHTILILS--KKGQKDWKQMYFQLR  278 (332)
T ss_pred             CcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhc--cccchhHHHHHHHHH
Confidence            356899999999999765 899999999999999999999999987765443  233222210  000123567888774

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=85.48  E-value=0.46  Score=47.79  Aligned_cols=51  Identities=24%  Similarity=0.293  Sum_probs=45.5

Q ss_pred             ccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCCCchh
Q 024822            3 ITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYK   53 (262)
Q Consensus         3 ~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~dy~   53 (262)
                      .+..||-+-.-.|++++++++.|+++.||+.|+.-++.|.+|.+.+.....
T Consensus       107 fi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~~~~~~~~~  157 (537)
T KOG0274|consen  107 FLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWWRMCRELIG  157 (537)
T ss_pred             hhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhhhhhhhhcc
Confidence            456899999999999999999999999999999999999999877666443

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=84.09  E-value=0.3  Score=46.34  Aligned_cols=50  Identities=18%  Similarity=0.173  Sum_probs=45.9

Q ss_pred             cccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCCCchh
Q 024822            4 TIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYK   53 (262)
Q Consensus         4 ~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~dy~   53 (262)
                      ++.+|.+-+..+++++.++++.+.|+||+.+...++-+..|++++-.++.
T Consensus         8 le~~~~~~l~~vls~~~~~~~~~~a~vs~rLk~~~s~~~lw~r~c~k~l~   57 (386)
T KOG4408|consen    8 LEWLPRDPLHLVLSFLLYRDLINCAYVSRRLKELGSHLPLWNRPCKKYLL   57 (386)
T ss_pred             hhhcccccceeeecccchhhhhcceeechHHhhhhhcccccccccccccc
Confidence            47889999999999999999999999999999999999999999966553

>PF02018 CBM_4_9: Carbohydrate binding domain; InterPro: IPR003305 The 1,4-beta-glucanase CenC from Cellulomonas fimi contains two cellulose-binding domains, CBD(N1) and CBD(N2), arranged in tandem at its N terminus

Probab=83.01  E-value=16  Score=27.97  Aligned_cols=69  Identities=12%  Similarity=0.037  Sum_probs=42.5

Q ss_pred             ccCCCceeEEEEEEEeccccCCCCccCEEEEEEEecCCCceeEEEeccCCccccccccccCCCeEEEEeeeEEecCCCcc
Q 024822          153 ILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDG  232 (262)
Q Consensus       153 ~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~~~~~v~l~~~~~~~~~P~~r~dgW~Eie~GeF~~~~~~~~  232 (262)
                      .|-||.+|.+.|-+|....      .++.+.+...+ +........-.         ..-.+.|.++++ +|... .+..
T Consensus        57 ~l~~G~~Y~~s~~vk~~~~------~~~~~~~~~~~-~~~~~~~~~~~---------~~~~~~W~~~s~-~ft~~-~~~~  118 (131)
T PF02018_consen   57 SLKPGKTYTVSFWVKADSG------GTVSVSLRDED-GSPYNWYTGQT---------VTITGEWTKYSG-TFTAP-SDDD  118 (131)
T ss_dssp             EE-TTSEEEEEEEEEESSS------EEEEEEEEESS-TTTEEEEEEEE---------EEETSSEEEEEE-EEEEE-SSCE
T ss_pred             EecCCCEEEEEEEEEeCCC------CEEEEEEEEcC-CCCcEEEEEEE---------EECCCCcEEEEE-EEEEC-CCCc
Confidence            3559999999999999874      56666766655 32111111100         111489999994 89887 4445


Q ss_pred             EEEEEEE
Q 024822          233 MLVCSLL  239 (262)
Q Consensus       233 ev~fsl~  239 (262)
                      .+.|.+.
T Consensus       119 ~~~l~~~  125 (131)
T PF02018_consen  119 TVRLYFE  125 (131)
T ss_dssp             EEEEEEE
T ss_pred             eEEEEEE
Confidence            6666543

These homologous CBDs are distinct in their selectivity for binding amorphous and not crystalline cellulose []. Multidimensional heteronuclear nuclear magnetic resonance (NMR) spectroscopy was used to determine the tertiary structure of the 152 amino acid N-terminal cellulose-binding domain from C. fimi 1,4-beta-glucanase CenC (CBDN1) []. The tertiary structure of CBDN1 is strikingly similar to that of the bacterial 1,3-1,4-beta-glucanases, as well as other sugar-binding proteins with jelly-roll folds.; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 3OEA_B 2ZEX_B 3OEB_A 2ZEY_A 2ZEW_A 1GUI_A 2W5F_A 2WZE_A 2WYS_A 2ZEZ_B ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 49.0 bits (116), Expect = 5e-07
 Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 13/86 (15%)

Query: 7  LPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYK------------- 53
          LP +    I+S  +P D C+L   +  +         W  FL  D               
Sbjct: 8  LPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDL 67

Query: 54 QIISNSVSDSSLITSLSKKDLYFHLC 79
          +I+   +S+ +         +Y   C
Sbjct: 68 EILKKPISEVTDGAFFDYMAVYRMCC 93

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 46/260 (17%), Positives = 76/260 (29%), Gaps = 87/260 (33%)

Query: 18  LTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISN----SVSDS---------- 63
           LTT R       +S    +    D       P + K ++         D           
Sbjct: 270 LTT-RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 64  --SLITSLSKKDL-----YFHLCHNPI--IINNGTMSF-ALEPESGKKCYMVGARGLSIA 113
             S+I    +  L     + H+  + +  II     S   LEP   +K +      LS+ 
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIE---SSLNVLEPAEYRKMF----DRLSV- 380

Query: 114 GADEPYTWILTSLPES-RFPEVAKVNSVWWFNVKAMIETKILSLRANYGAYLVFKFAESR 172
                        P S   P    + S+ WF+V       +++    Y   LV       
Sbjct: 381 ------------FPPSAHIPT--ILLSLIWFDVIKSDVMVVVNKLHKYS--LV------- 417

Query: 173 SGFERRPVISRVYIEG----------SDNGLRRSLSLDPSRNMAR------LSQDRGDGW 216
              E++P  S + I            ++  L RS+ +D   N+ +      L     D +
Sbjct: 418 ---EKQPKESTISIPSIYLELKVKLENEYALHRSI-VD-HYNIPKTFDSDDLIPPYLDQY 472

Query: 217 ---------MEIEMGEFFNE 227
                      IE  E    
Sbjct: 473 FYSHIGHHLKNIEHPERMTL 492

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.76
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.48
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.0
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.87
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.7
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.67
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	96.75
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	95.29
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	92.57
1dyo_A	160	Endo-1,4-beta-xylanase Y; carbohydrate-binding mod	92.44
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	83.22

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.76  E-value=5.9e-09  Score=70.87  Aligned_cols=45  Identities=22%  Similarity=0.303  Sum_probs=40.1

Q ss_pred             ccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccC
Q 024822            3 ITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENF   47 (262)
Q Consensus         3 ~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f   47 (262)
                      .+++||++++..|+++++|.|.+++++||+.|+.++.++.+|+++
T Consensus         8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            467899999999999999999999999999999999999999864

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.48  E-value=8e-08  Score=87.97  Aligned_cols=77  Identities=21%  Similarity=0.344  Sum_probs=60.9

Q ss_pred             ccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCCCchh---hhhcccCCCcc----------cccCC
Q 024822            3 ITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYK---QIISNSVSDSS----------LITSL   69 (262)
Q Consensus         3 ~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~dy~---~Il~~~~~~~~----------~~~~~   69 (262)
                      .+++||.+++.+|+||++|+|+||+|+||+.+|.+|+.+.+|+.||-.|+.   +|...+.+...          ...+.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~~~W~si~~~s~p~~~~~~~~~~~~~~~~~~   83 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKSLPDLEILKKPISEVTDGAFF   83 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSGGGCCCCCGGGCCSCHHHHSSCSCC----CC
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccCCCCCccccccCcchhhccCccccccccccc
Confidence            578999999999999999999999999999999999999999999987644   44433222110          00145


Q ss_pred             CHHHHHHhhc
Q 024822           70 SKKDLYFHLC   79 (262)
Q Consensus        70 SkKely~~L~   79 (262)
                      .++..|.+=|
T Consensus        84 ~~~~~y~~~~   93 (312)
T 3l2o_B           84 DYMAVYRMCC   93 (312)
T ss_dssp             CHHHHHHHHC
T ss_pred             cHHHHHHhcC
Confidence            6899999988

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.00  E-value=2.2e-06  Score=78.55  Aligned_cols=49  Identities=22%  Similarity=0.368  Sum_probs=45.8

Q ss_pred             CcccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCC
Q 024822            1 MDITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLP   49 (262)
Q Consensus         1 ~~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP   49 (262)
                      ++.+..||++++..|++|++|.|.|++++||+.|+.+++++.+|++++-
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~   64 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCK   64 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhhee
Confidence            4678899999999999999999999999999999999999999998763

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.87  E-value=0.0016  Score=59.33  Aligned_cols=81  Identities=11%  Similarity=0.199  Sum_probs=60.8

Q ss_pred             cccccccHHHHHHHHhcCChhhHh-hhhhccHHHHhhhcCchhhccCCCCchhhhhcc-cCCCcccccCCCHHHHHHhhc
Q 024822            2 DITIALPAECISNIISLTTPRDAC-RLSVVSRVFRSAADSDSAWENFLPSDYKQIISN-SVSDSSLITSLSKKDLYFHLC   79 (262)
Q Consensus         2 ~~~~~Lpe~cia~ils~t~P~d~c-r~a~vs~~fr~aa~sd~vW~~fLP~dy~~Il~~-~~~~~~~~~~~SkKely~~L~   79 (262)
                      ..+..||++.+..||+++.|++.+ |+++||+.+|..++++.+|++.|....  +... ...+    +..+-|.+|..--
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g--~~~~~~~~~----~~~~Wk~~y~~~~  122 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEG--LVPEGSADE----ERDHWQQFYFLSK  122 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTT--CCCC---------CCSCHHHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccC--cccccccCC----CCCChhhhhehee
Confidence            356799999999999999999999 999999999999999999998876651  2111 1111    2356899998743


Q ss_pred             cCCeEecCC
Q 024822           80 HNPIIINNG   88 (262)
Q Consensus        80 ~~pvlld~g   88 (262)
                      ..-+||.+.
T Consensus       123 ~gRNLL~NP  131 (297)
T 2e31_A          123 RRRNLLRNP  131 (297)
T ss_dssp             HCCCCSSCS
T ss_pred             cccceeecC
Confidence            345666543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.70  E-value=1e-05  Score=74.06  Aligned_cols=47  Identities=23%  Similarity=0.308  Sum_probs=43.9

Q ss_pred             cccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcC-chhhccCC
Q 024822            2 DITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADS-DSAWENFL   48 (262)
Q Consensus         2 ~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~s-d~vW~~fL   48 (262)
                      +.+..||++.+..|++|++|+|.|++++||+.++..+++ +.+|++++
T Consensus        13 d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~   60 (464)
T 3v7d_B           13 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLL   60 (464)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHH
T ss_pred             CChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            567889999999999999999999999999999999987 89998876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.67  E-value=8.7e-06  Score=74.66  Aligned_cols=50  Identities=22%  Similarity=0.451  Sum_probs=46.0

Q ss_pred             cccccccHH----HHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCCCc
Q 024822            2 DITIALPAE----CISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSD   51 (262)
Q Consensus         2 ~~~~~Lpe~----cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~d   51 (262)
                      +.+..||++    .+..|++|++|.|.|++++||+.|+..++++.+|++++-..
T Consensus         9 d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~   62 (435)
T 1p22_A            9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (435)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             ChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhh
Confidence            567889999    99999999999999999999999999999999999887554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=96.75  E-value=0.00086  Score=59.29  Aligned_cols=45  Identities=22%  Similarity=0.303  Sum_probs=40.8

Q ss_pred             ccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccC
Q 024822            3 ITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENF   47 (262)
Q Consensus         3 ~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~f   47 (262)
                      .+++||++++..|+++++++|.+++++||+.|+.++.+...|.+.
T Consensus         8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l   52 (336)
T 2ast_B            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (336)
T ss_dssp             CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEE
T ss_pred             ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheee
Confidence            468999999999999999999999999999999999877778653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=95.29  E-value=0.0095  Score=56.52  Aligned_cols=36  Identities=19%  Similarity=0.460  Sum_probs=29.4

Q ss_pred             cccccccHHHHHHHHhcCC-hhhHhhhhhccHHHHhh
Q 024822            2 DITIALPAECISNIISLTT-PRDACRLSVVSRVFRSA   37 (262)
Q Consensus         2 ~~~~~Lpe~cia~ils~t~-P~d~cr~a~vs~~fr~a   37 (262)
                      +++++||++++..|++|++ ++|++++|+||+.++.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            6788999999999999999 99999999999999988

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=92.57  E-value=0.064  Score=50.85  Aligned_cols=34  Identities=21%  Similarity=0.350  Sum_probs=31.6

Q ss_pred             ccccHHHHHHHHhcC-ChhhHhhhhhccHHHHhhh
Q 024822            5 IALPAECISNIISLT-TPRDACRLSVVSRVFRSAA   38 (262)
Q Consensus         5 ~~Lpe~cia~ils~t-~P~d~cr~a~vs~~fr~aa   38 (262)
                      .+||++++.+|++|+ +++|+++++.||+.|+.+.
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            379999999999999 8999999999999999873

>1dyo_A Endo-1,4-beta-xylanase Y; carbohydrate-binding module, xylan-binding; 2.1A {Clostridium thermocellum} SCOP: b.18.1.7 PDB: 1h6y_A 1h6x_A

Probab=92.44  E-value=3.6  Score=33.16  Aligned_cols=95  Identities=9%  Similarity=0.065  Sum_probs=56.6

Q ss_pred             cccCCCceeEEEEEEEeccccCCCCccCEEEEEEEecCCCceeEEEeccCCccccccccccCCCeEEEEeeeEEecCCCc
Q 024822          152 KILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGD  231 (262)
Q Consensus       152 ~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~~~~~v~l~~~~~~~~~P~~r~dgW~Eie~GeF~~~~~~~  231 (262)
                      ..|.||++|.+..-+|+.++.   +...+.+++...+.+.. .+...+..       -....++|.+++-|.|...... 
T Consensus        63 ~~l~~g~~Y~~Sa~V~~~~g~---~~~~v~~~l~~~~~~g~-~~y~~i~~-------~~~~~~~W~~L~G~~ft~~~~~-  130 (160)
T 1dyo_A           63 RTFVPGNTYCFSVVASFIEGA---SSTTFCMKLQYVDGSGT-QRYDTIDM-------KTVGPNQWVHLYNPQYRIPSDA-  130 (160)
T ss_dssp             TTSCTTCEEEEEEEEECCSSS---SCEEEEEEEEEECTTSC-EEEEEEEE-------EEECSSCCEEEEEEEEECCTTC-
T ss_pred             hhccCCCEEEEEEEEEECCCC---CceeEEEEEEEEcCCCC-EEEEEEee-------EEEcCCccEEEECcEEEeCCCC-
Confidence            468899999999999997743   22234444444231221 11222211       0122589999998899886542 


Q ss_pred             cEEEEEEEEEecCcccccEEEEEEEEEecC
Q 024822          232 GMLVCSLLEFDSYIAMRGLIIQGIELRPKS  261 (262)
Q Consensus       232 ~ev~fsl~e~~~~~wK~GLiv~GieIRPk~  261 (262)
                      ..+.+-+ |  +..-..=+.|+.|.|.|..
T Consensus       131 ~~~~lyv-e--~~~~~~d~yiDdv~i~~~g  157 (160)
T 1dyo_A          131 TDMYVYV-E--TADDTINFYIDEAIGAVAG  157 (160)
T ss_dssp             EEEEEEE-E--ESSCCCCEEEEEEEEEETT
T ss_pred             CEEEEEE-E--CCCCCccEEEEEEEEEeCc
Confidence            2343322 3  3334566899999999864

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=83.22  E-value=0.3  Score=37.22  Aligned_cols=65  Identities=18%  Similarity=0.386  Sum_probs=39.3

Q ss_pred             cccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCCCchhhhhcccCCCcccccCCCHHHHHHhhcc
Q 024822            6 ALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDYKQIISNSVSDSSLITSLSKKDLYFHLCH   80 (262)
Q Consensus         6 ~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~dy~~Il~~~~~~~~~~~~~SkKely~~L~~   80 (262)
                      ..|-+.+.-||-..||....++-.-|+.+  .-++|-+|.+++=.||..--     +.   ..-|.+++|.+|.+
T Consensus        12 ~~Py~lL~PVLek~tp~QL~~IE~~nP~L--~~dTdeLWk~~c~rdF~~~~-----p~---e~esWRelY~rl~~   76 (97)
T 4hfx_A           12 GVPYSVLEPVLERCTPDQLYRIEEYNHVL--IEETDQLWKVHCHRDFKEER-----PE---EYESWREMYLRLQD   76 (97)
T ss_dssp             --------CCGGGCCHHHHHHHHTC--------CCHHHHHHHC----CCSC-----CC---SSSCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHccCCHHHHHHHHHhCccc--chhhHHHHHHHHHhHCcccC-----CC---CCCCHHHHHHHHHH
Confidence            35778888899999999999999999966  56899999999999987321     11   24689999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	6e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	7e-05
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	3e-04
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	6e-04

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 6e-06
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 6  ALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAW 44
          +LP E +  I S     +  ++S V + +   A  +S W
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 7e-05
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 1  MDITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSDY 52
           D    LP E    ++S   P+D  + +   R +R  A+ +  W      + 
Sbjct: 16 RDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEG 67

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 6/93 (6%)

Query: 1  MDITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSA-WENFLPSDY----KQI 55
           D+  +LP E    I +     D      VS+ +       ++ W+  L S+     K  
Sbjct: 3  RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGF 62

Query: 56 ISNSVSDSSLITSLSKKDLYFHLC-HNPIIINN 87
           S ++  S     LS++D        N  I+ N
Sbjct: 63 NSLNLKLSQKYPKLSQQDRLRLSFLENIFILKN 95

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 6e-04
 Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 4/51 (7%)

Query: 1  MDITIALPA----ECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENF 47
           D   ALPA        NI+S    +  C   +V + +         W+  
Sbjct: 8  RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKL 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.95
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.39
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.25
d1h6ya_	157	Xylan-binding domain {Clostridium thermocellum [Ta	94.39
d1guia_	155	Carbohydrate binding module from laminarinase 16A	90.3

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.5e-10  Score=85.56  Aligned_cols=50  Identities=22%  Similarity=0.391  Sum_probs=46.0

Q ss_pred             cccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCCCc
Q 024822            2 DITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSD   51 (262)
Q Consensus         2 ~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~d   51 (262)
                      |.|..||+|++..|+++++|+|+|++|+||+.|+.++.+|.+|++.+-.+
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~   66 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEE   66 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTT
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence            56789999999999999999999999999999999999999998776443

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=7e-10  Score=70.88  Aligned_cols=40  Identities=25%  Similarity=0.350  Sum_probs=39.1

Q ss_pred             ccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhh
Q 024822            5 IALPAECISNIISLTTPRDACRLSVVSRVFRSAADSDSAW   44 (262)
Q Consensus         5 ~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW   44 (262)
                      +.||++++..|+++++|+|.||+++|||.|+.+++++.+|
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            6899999999999999999999999999999999999999

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=3.7e-08  Score=73.59  Aligned_cols=46  Identities=22%  Similarity=0.286  Sum_probs=41.7

Q ss_pred             cccccccHHHHHHHHhcCChhhHhhhhhccHHHHhhhcC-chhhccC
Q 024822            2 DITIALPAECISNIISLTTPRDACRLSVVSRVFRSAADS-DSAWENF   47 (262)
Q Consensus         2 ~~~~~Lpe~cia~ils~t~P~d~cr~a~vs~~fr~aa~s-d~vW~~f   47 (262)
                      |.+.+||++.+..|+++++|.|.|++|+||+.|+..+++ ..+|++.
T Consensus         4 D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l   50 (100)
T d1nexb1           4 DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKL   50 (100)
T ss_dssp             CHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHHHHHH
T ss_pred             CchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            678899999999999999999999999999999987765 4799875

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=9.7e-08  Score=73.15  Aligned_cols=50  Identities=22%  Similarity=0.451  Sum_probs=44.7

Q ss_pred             cccccccH----HHHHHHHhcCChhhHhhhhhccHHHHhhhcCchhhccCCCCc
Q 024822            2 DITIALPA----ECISNIISLTTPRDACRLSVVSRVFRSAADSDSAWENFLPSD   51 (262)
Q Consensus         2 ~~~~~Lpe----~cia~ils~t~P~d~cr~a~vs~~fr~aa~sd~vW~~fLP~d   51 (262)
                      |.+..||.    |.+..|+||++|.|.|++|+||+.|+..++++.+|.+++-.+
T Consensus         9 D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~   62 (118)
T d1p22a1           9 DFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERM   62 (118)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             cHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhh
Confidence            45667885    999999999999999999999999999999999999877443

>d1h6ya_ b.18.1.7 (A:) Xylan-binding domain {Clostridium thermocellum [TaxId: 1515]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM22
domain: Xylan-binding domain
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.39  E-value=0.63  Score=34.20  Aligned_cols=100  Identities=10%  Similarity=0.090  Sum_probs=59.3

Q ss_pred             EEeccccCCCceeEEEEEEEeccccCCCCccCEEEEEEEecCCCceeEEEeccCCccccccccccCCCeEEEEeeeEEec
Q 024822          148 MIETKILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNE  227 (262)
Q Consensus       148 ~i~~~~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~~~~~v~l~~~~~~~~~P~~r~dgW~Eie~GeF~~~  227 (262)
                      .+....|.||++|.+.+-+|+.+...+   ..+.+.+...+ +........+..       .....++|.++..++|...
T Consensus        56 ~~~~~~l~~g~tY~~s~~vk~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~W~~~~~~~~~~~  124 (157)
T d1h6ya_          56 ALNPRTFVPGNTYCFSVVASFIEGASS---TTFCMKLQYVD-GSGTQRYDTIDM-------KTVGPNQWVHLYNPQYRIP  124 (157)
T ss_dssp             ECCTTTSCTTCEEEEEEEEECCSSSSC---EEEEEEEEEEC-TTSCEEEEEEEE-------EEECTTCCEEEEEEEEECC
T ss_pred             EecceeccCCCEEEEEEEEEeCCCCcc---eeEEEEEEEec-CCCceeEEEeeE-------EEeccCccEEEEEEEEECC
Confidence            344456889999999999998774432   22445554444 222222222211       1222578999988898776


Q ss_pred             CCCccEEEEEEEEEecCcccccEEEEEEEEEecCC
Q 024822          228 NGGDGMLVCSLLEFDSYIAMRGLIIQGIELRPKSD  262 (262)
Q Consensus       228 ~~~~~ev~fsl~e~~~~~wK~GLiv~GieIRPk~~  262 (262)
                      .+. ..+.|-+ +  +..-..-+.|+-+.+.|+++
T Consensus       125 ~~~-~~~~l~~-~--~~~~~~~~yiDDv~~~~~~~  155 (157)
T d1h6ya_         125 SDA-TDMYVYV-A--TADDTINFYIDEAIGAVAGT  155 (157)
T ss_dssp             TTC-EEEEEEE-E--ESSCCCCEEEEEEEEEETTC
T ss_pred             CCC-cEEEEEE-E--CCCCCceEEEeeEEEecccc
Confidence            543 2444432 2  22223349999999999864

>d1guia_ b.18.1.14 (A:) Carbohydrate binding module from laminarinase 16A {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: CBM4/9
domain: Carbohydrate binding module from laminarinase 16A
species: Thermotoga maritima [TaxId: 2336]

Probab=90.30  E-value=2.4  Score=30.98  Aligned_cols=88  Identities=10%  Similarity=0.156  Sum_probs=51.9

Q ss_pred             ccCCCceeEEEEEEEeccccCCCCccCEEEEEEEecCCCceeEEEeccCCccccccccccCCCeEEEEeeeEEecCCCcc
Q 024822          153 ILSLRANYGAYLVFKFAESRSGFERRPVISRVYIEGSDNGLRRSLSLDPSRNMARLSQDRGDGWMEIEMGEFFNENGGDG  232 (262)
Q Consensus       153 ~LSp~t~Y~ay~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~~~~~v~l~~~~~~~~~P~~r~dgW~Eie~GeF~~~~~~~~  232 (262)
                      .|.||.+|.+.|..|-...      .++.+.+...+.+........+           .-...|-++++ +|......+.
T Consensus        68 ~l~~g~~Y~lSf~~k~~~~------~~~~~~~~~~~~~~~~~~~~~~-----------~~t~~W~~~s~-~f~~~~~~~~  129 (155)
T d1guia_          68 GLYRGKTYTISFKAKADTP------RPINVKILQNHDPWTNYFAQTV-----------NLTADWQTFTF-TYTHPDDADE  129 (155)
T ss_dssp             ECCTTCEEEEEEEEEESSC------EEEEEEEECSSTTCCEEEEEEE-----------EECSSCEEEEE-EEECCTTSCS
T ss_pred             EecCCCEEEEEEEEEeCCC------CcEEEEEEEcCCCCeEEeeeEE-----------eeccccEEEEE-EEEecCCCCc
Confidence            3779999999999886432      2334444332211222111111           11468999885 7877665444


Q ss_pred             EEEEEEEEEecCcccccEEEEEEEEEec
Q 024822          233 MLVCSLLEFDSYIAMRGLIIQGIELRPK  260 (262)
Q Consensus       233 ev~fsl~e~~~~~wK~GLiv~GieIRPk  260 (262)
                      .+.+.+. . ++.-.+.+.|+-|.|-||
T Consensus       130 ~~~l~~~-~-~~~~~~~~~iDnV~l~~~  155 (155)
T d1guia_         130 VVQISFE-L-GEGTATTIYFDDVTVSPQ  155 (155)
T ss_dssp             EEEEEEE-C-CSSCCCEEEEEEEEEEEC
T ss_pred             cEEEEEE-E-CCCCCcEEEEEEEEEEEC
Confidence            5555443 2 233356799999999997