Citrus Sinensis ID: 024831

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
MPPPGASGFPGAGAGAGGPTSFRFNTRNPEDIFSEFFGFSSPFGDMGGSRASASGFPRGMFGDDIFASFNRGSAGEGSANALRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLIP
ccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEEEEcEEcccccEEEEEEEEEEEEccccccccEEEcccccccccccccccEEEEEccccccccEEEcccEEEEEEcccccccccEEEEEEcccccEEEEccccccccccEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHcccc
cccccccccccccccccccccEEEccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccEEEEEccccccccccEEEEEEEEEEEEccccccccEEEcccccccccccccccEEEEEEccccccEEEccccEEEEEEEEHHHHHcccEEEEEcccccEEEEEccccccccEEEEEccccccccccccccccEEEEEEEEccccccHHHHHHHHHHcc
mpppgasgfpgagagaggptsfrfntrnpedifseffgfsspfgdmggsrasasgfprgmfgddifasfnrgsagegsanalrkaapiertlpcsledlykgttkkmKISRDvidasgrpntteeiltieikpgwkkgtkitfpekgnelrnvipsdlifiidekphslfkrdgndlvVTQKISLVEALTGYTVQlttldgrtltvpinsvisptyeevikgegmpipkepskrgnlrikfnikfpsklttEQKSGLKRLIP
mpppgasgfpgagagagGPTSFRFNTRNPEDIFSEFFGFSSPFGDMGGSRASASGFPRGMFGDDIFASFNRGSAGEGSANAlrkaapiertlpcsledlykgttkkmkisrdvidasgrpntteeiltieikpgwkkgtkitfpekgnelrnVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVqlttldgrtltvpinsvisptyeevikgegmpipkepskrgnlrikfnikfpskltteqksglkrlip
MpppgasgfpgagagaggpTSFRFNTRNPEDIfseffgfsspfgDMGGSRASASGFPRGMFGDDIFASFNRGSAGEGSANALRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLIP
*******************************IFSEFFGF*********************FGDDIFA***********************TLPCSLEDLYKGTT********VI********TEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIK*****************IKFNI*******************
*PPPGAS*****************NTRNPEDIFSEFFGF***************************************************TLPCSLEDLYKGTTKKMKISRDVI******NTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLIP
MPPPGASGFPGAGAGAGGPTSFRFNTRNPEDIFSEFFGFSSPFGDMGGSRASASGFPRGMFGDDIFASFNRGS*********RKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSK**************
*******************TSFRFNTRNPEDIFSEFFGFSSPFGDMGGSRASASGFPRGMFGDDIFASFNRGSAGE*****LRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLIP
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPPPGASGFPGAGAGAGGPTSFRFNTRNPEDIFSEFFGFSSPFGDMGGSRASASGFPRGMFGDDIFASFNRGSAGEGSANALRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLIP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query262 2.2.26 [Sep-21-2011]
P25685340 DnaJ homolog subfamily B yes no 0.885 0.682 0.426 4e-49
Q9QYJ3340 DnaJ homolog subfamily B yes no 0.881 0.679 0.421 1e-48
Q3MI00340 DnaJ homolog subfamily B yes no 0.885 0.682 0.422 1e-48
Q80Y75316 DnaJ homolog subfamily B no no 0.835 0.693 0.421 9e-47
Q9UDY4337 DnaJ homolog subfamily B no no 0.912 0.709 0.421 1e-46
Q5R8J8337 DnaJ homolog subfamily B no no 0.912 0.709 0.421 1e-46
Q2KIT4337 DnaJ homolog subfamily B no no 0.912 0.709 0.421 1e-46
P59910316 DnaJ homolog subfamily B no no 0.885 0.734 0.406 6e-46
Q24133334 DnaJ protein homolog 1 OS yes no 0.874 0.685 0.432 3e-45
Q9D832337 DnaJ homolog subfamily B no no 0.912 0.709 0.413 4e-45
>sp|P25685|DNJB1_HUMAN DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4 Back     alignment and function desciption
 Score =  194 bits (494), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 105/246 (42%), Positives = 153/246 (62%), Gaps = 14/246 (5%)

Query: 28  NPEDIFSEFFGFSSPFGDMGGSRASA---------SGFPRGMFGDDIFASFNRGSAGEGS 78
           +P  +F+EFFG  +PF    G R            SGFP GM G   F + N G +    
Sbjct: 97  DPHAMFAEFFGGRNPFDTFFGQRNGEEGMDIDDPFSGFPMGMGG---FTNVNFGRSRSAQ 153

Query: 79  ANALRKAA-PIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEE-ILTIEIKPGWK 136
             A +K   P+   L  SLE++Y G TKKMKIS   ++  G+    E+ ILTIE+K GWK
Sbjct: 154 EPARKKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWK 213

Query: 137 KGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQL 196
           +GTKITFP++G++  N IP+D++F++ +KPH++FKRDG+D++   +ISL EAL G TV +
Sbjct: 214 EGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNV 273

Query: 197 TTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSG 256
            TLDGRT+ V    VI P     + GEG+P+PK P KRG+L I+F + FP ++    ++ 
Sbjct: 274 PTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTV 333

Query: 257 LKRLIP 262
           L++++P
Sbjct: 334 LEQVLP 339
Interacts with HSP70 and can stimulate its ATPase activity. Stimulates the association between HSC70 and HIP.
Homo sapiens (taxid: 9606)
>sp|Q9QYJ3|DNJB1_MOUSE DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3 Back     alignment and function description
>sp|Q3MI00|DNJB1_BOVIN DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3 Back     alignment and function description
>sp|Q80Y75|DJB13_MOUSE DnaJ homolog subfamily B member 13 OS=Mus musculus GN=Dnajb13 PE=2 SV=1 Back     alignment and function description
>sp|Q9UDY4|DNJB4_HUMAN DnaJ homolog subfamily B member 4 OS=Homo sapiens GN=DNAJB4 PE=1 SV=1 Back     alignment and function description
>sp|Q5R8J8|DNJB4_PONAB DnaJ homolog subfamily B member 4 OS=Pongo abelii GN=DNAJB4 PE=2 SV=1 Back     alignment and function description
>sp|Q2KIT4|DNJB4_BOVIN DnaJ homolog subfamily B member 4 OS=Bos taurus GN=DNAJB4 PE=2 SV=1 Back     alignment and function description
>sp|P59910|DJB13_HUMAN DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1 Back     alignment and function description
>sp|Q24133|DNAJ1_DROME DnaJ protein homolog 1 OS=Drosophila melanogaster GN=DnaJ-1 PE=1 SV=3 Back     alignment and function description
>sp|Q9D832|DNJB4_MOUSE DnaJ homolog subfamily B member 4 OS=Mus musculus GN=Dnajb4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
255574345339 Protein SIS1, putative [Ricinus communis 0.973 0.752 0.796 1e-112
358349085341 Chaperone protein dnaJ [Medicago truncat 0.984 0.756 0.772 1e-108
356503348337 PREDICTED: dnaJ homolog subfamily B memb 0.912 0.709 0.811 1e-108
356577754337 PREDICTED: LOW QUALITY PROTEIN: dnaJ hom 0.912 0.709 0.811 1e-108
356568094339 PREDICTED: dnaJ homolog subfamily B memb 0.919 0.710 0.824 1e-108
356568098353 PREDICTED: dnaJ homolog subfamily B memb 0.919 0.682 0.824 1e-108
358349083264 Chaperone protein dnaJ [Medicago truncat 0.984 0.977 0.772 1e-108
217073071341 unknown [Medicago truncatula] gi|3884932 0.984 0.756 0.768 1e-107
356496218337 PREDICTED: dnaJ homolog subfamily B memb 0.912 0.709 0.811 1e-107
356521016346 PREDICTED: dnaJ homolog subfamily B memb 0.916 0.693 0.821 1e-107
>gi|255574345|ref|XP_002528086.1| Protein SIS1, putative [Ricinus communis] gi|223532475|gb|EEF34265.1| Protein SIS1, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/265 (79%), Positives = 232/265 (87%), Gaps = 10/265 (3%)

Query: 1   MPPPG-ASGFPGAGAGAGGPTSFRFNTRNPEDIFSEFFGFSSPFG---DMGGSRASASGF 56
           MPPPG ASGF       GG T+F+FN R+ +DIFSE FGFSSPFG   DMGGSRAS S F
Sbjct: 78  MPPPGGASGF----GHDGGSTTFQFNPRSADDIFSEIFGFSSPFGGMGDMGGSRASTSNF 133

Query: 57  PRGMFGDDIFASFNRGSAGEGSANALRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA 116
           PRGMFGDDIF+SF R +AGE S+   RK APIERTL CSLEDLYKG TKKMKISRDVID+
Sbjct: 134 PRGMFGDDIFSSF-RTAAGE-SSGPPRKGAPIERTLLCSLEDLYKGITKKMKISRDVIDS 191

Query: 117 SGRPNTTEEILTIEIKPGWKKGTKITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGND 176
           SGRP T EEILTIEIKPGWKKGTKITFPEKGNE R VIPSDL+FIIDEKPH +FKRDGND
Sbjct: 192 SGRPTTVEEILTIEIKPGWKKGTKITFPEKGNEQRGVIPSDLVFIIDEKPHGVFKRDGND 251

Query: 177 LVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGN 236
           L+VTQKISLVEALTGYTVQ+TT+DGR LT+PI+S+I+PTYEEV+KGEGMPIPKEPSKRGN
Sbjct: 252 LIVTQKISLVEALTGYTVQVTTVDGRNLTIPISSIITPTYEEVVKGEGMPIPKEPSKRGN 311

Query: 237 LRIKFNIKFPSKLTTEQKSGLKRLI 261
           LRIKF+IKFPSKLT EQK+G+KRLI
Sbjct: 312 LRIKFSIKFPSKLTVEQKTGIKRLI 336

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|358349085|ref|XP_003638570.1| Chaperone protein dnaJ [Medicago truncatula] gi|355504505|gb|AES85708.1| Chaperone protein dnaJ [Medicago truncatula] Back     alignment and taxonomy information
>gi|356503348|ref|XP_003520472.1| PREDICTED: dnaJ homolog subfamily B member 13-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356577754|ref|XP_003556988.1| PREDICTED: LOW QUALITY PROTEIN: dnaJ homolog subfamily B member 13-like [Glycine max] Back     alignment and taxonomy information
>gi|356568094|ref|XP_003552248.1| PREDICTED: dnaJ homolog subfamily B member 13-like isoform 1 [Glycine max] gi|356568096|ref|XP_003552249.1| PREDICTED: dnaJ homolog subfamily B member 13-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356568098|ref|XP_003552250.1| PREDICTED: dnaJ homolog subfamily B member 13-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|358349083|ref|XP_003638569.1| Chaperone protein dnaJ [Medicago truncatula] gi|355504504|gb|AES85707.1| Chaperone protein dnaJ [Medicago truncatula] Back     alignment and taxonomy information
>gi|217073071|gb|ACJ84895.1| unknown [Medicago truncatula] gi|388493284|gb|AFK34708.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356496218|ref|XP_003516966.1| PREDICTED: dnaJ homolog subfamily B member 13-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356521016|ref|XP_003529154.1| PREDICTED: dnaJ homolog subfamily B member 13-like isoform 1 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query262
TAIR|locus:2179127335 AT5G01390 [Arabidopsis thalian 0.908 0.710 0.706 2.9e-87
TAIR|locus:2097638323 AT3G08910 [Arabidopsis thalian 0.866 0.702 0.683 6.4e-83
TAIR|locus:2054809337 AT2G20560 [Arabidopsis thalian 0.908 0.706 0.636 2.9e-80
TAIR|locus:2121368348 AT4G28480 [Arabidopsis thalian 0.919 0.692 0.601 5.5e-77
TAIR|locus:2054799284 AT2G20550 [Arabidopsis thalian 0.725 0.669 0.661 2.4e-67
TAIR|locus:2097880350 AT3G47940 [Arabidopsis thalian 0.889 0.665 0.524 4.2e-63
TAIR|locus:2179429347 AT5G25530 [Arabidopsis thalian 0.896 0.677 0.510 1.6e-61
TAIR|locus:2825170331 AT1G59725 [Arabidopsis thalian 0.805 0.637 0.587 1e-59
TAIR|locus:2012743349 AT1G10350 [Arabidopsis thalian 0.896 0.673 0.517 4.5e-59
UNIPROTKB|B4DX52240 DNAJB1 "cDNA FLJ59093, highly 0.786 0.858 0.450 4.8e-46
TAIR|locus:2179127 AT5G01390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 171/242 (70%), Positives = 197/242 (81%)

Query:    21 SFRFNTRNPEDIXXXXXXXXXXXXDMGG-SRASASGFPRGMFGDDIFASFNRGSAGEGSA 79
             SFRFN R+ +DI              G  SRA  SGF    +GDDIFASF   + G  ++
Sbjct:    95 SFRFNPRSADDIFSEFFGFTRPSFGTGSDSRAGPSGF---RYGDDIFASFRAATTGGEAS 151

Query:    80 NALRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGT 139
                RK+APIER LPCSLEDLYKG +KKMKISRDV+D+SGRP   EEILTIEIKPGWKKGT
Sbjct:   152 IPSRKSAPIERQLPCSLEDLYKGVSKKMKISRDVLDSSGRPTPVEEILTIEIKPGWKKGT 211

Query:   140 KITFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTL 199
             KITF EKGNE R VIPSDL+FI+DEKPH +FKRDGNDLVV QKISLV+ALTGYT Q+TTL
Sbjct:   212 KITFLEKGNEHRGVIPSDLVFIVDEKPHPVFKRDGNDLVVMQKISLVDALTGYTAQVTTL 271

Query:   200 DGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKR 259
             DGRTLTVP+N+VISP+YEEV+KGEGMPIPK+PS++GNLRI+F IKFPSKLTTEQKSG+KR
Sbjct:   272 DGRTLTVPVNNVISPSYEEVVKGEGMPIPKDPSRKGNLRIRFIIKFPSKLTTEQKSGIKR 331

Query:   260 LI 261
             ++
Sbjct:   332 ML 333
GO:0005737 "cytoplasm" evidence=ISM
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0031072 "heat shock protein binding" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
TAIR|locus:2097638 AT3G08910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054809 AT2G20560 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121368 AT4G28480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054799 AT2G20550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097880 AT3G47940 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179429 AT5G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825170 AT1G59725 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012743 AT1G10350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B4DX52 DNAJB1 "cDNA FLJ59093, highly similar to DnaJ homolog subfamily B member 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00038888001
SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (338 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00017724001
SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (538 aa)
  •     0.485
GSVIVG00017185001
SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (482 aa)
  •     0.484
GSVIVG00022013001
SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (667 aa)
  •     0.481
GSVIVG00024357001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (652 aa)
  •     0.479
GSVIVG00018481001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (650 aa)
  •     0.479
GSVIVG00018506001
SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (649 aa)
  •     0.478
GSVIVG00024351001
SubName- Full=Putative uncharacterized protein (Chromosome chr6 scaffold_3, whole genome shotgu [...] (648 aa)
  •     0.477
GSVIVG00021301001
SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (649 aa)
  •     0.477
GSVIVG00022731001
SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (655 aa)
  •     0.476
GSVIVG00019978001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (574 aa)
  •     0.476

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
cd10747158 cd10747, DnaJ_C, C-terminal substrate binding doma 1e-51
PTZ00037421 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov 4e-37
COG0484371 COG0484, DnaJ, DnaJ-class molecular chaperone with 5e-29
pfam0155681 pfam01556, DnaJ_C, DnaJ C terminal domain 5e-26
PRK14291382 PRK14291, PRK14291, chaperone protein DnaJ; Provis 2e-22
TIGR02349354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 6e-21
PRK14282369 PRK14282, PRK14282, chaperone protein DnaJ; Provis 2e-17
PRK14283378 PRK14283, PRK14283, chaperone protein DnaJ; Provis 8e-17
PRK14299291 PRK14299, PRK14299, chaperone protein DnaJ; Provis 1e-14
PRK14289386 PRK14289, PRK14289, chaperone protein DnaJ; Provis 6e-14
PRK14281397 PRK14281, PRK14281, chaperone protein DnaJ; Provis 2e-13
PRK14293374 PRK14293, PRK14293, chaperone protein DnaJ; Provis 2e-13
PRK14277386 PRK14277, PRK14277, chaperone protein DnaJ; Provis 4e-13
PRK14278378 PRK14278, PRK14278, chaperone protein DnaJ; Provis 4e-12
PRK14301373 PRK14301, PRK14301, chaperone protein DnaJ; Provis 2e-11
PRK10767371 PRK10767, PRK10767, chaperone protein DnaJ; Provis 2e-11
PRK14286372 PRK14286, PRK14286, chaperone protein DnaJ; Provis 2e-11
PRK14280376 PRK14280, PRK14280, chaperone protein DnaJ; Provis 6e-11
PRK14279392 PRK14279, PRK14279, chaperone protein DnaJ; Provis 1e-10
PRK14294366 PRK14294, PRK14294, chaperone protein DnaJ; Provis 2e-10
PRK10266306 PRK10266, PRK10266, curved DNA-binding protein Cbp 2e-10
PRK14285365 PRK14285, PRK14285, chaperone protein DnaJ; Provis 3e-10
PRK14292371 PRK14292, PRK14292, chaperone protein DnaJ; Provis 3e-09
PRK14296372 PRK14296, PRK14296, chaperone protein DnaJ; Provis 2e-08
PRK14295389 PRK14295, PRK14295, chaperone protein DnaJ; Provis 4e-08
PRK14276380 PRK14276, PRK14276, chaperone protein DnaJ; Provis 4e-08
PRK14298377 PRK14298, PRK14298, chaperone protein DnaJ; Provis 7e-08
PRK14288369 PRK14288, PRK14288, chaperone protein DnaJ; Provis 1e-07
PRK14284391 PRK14284, PRK14284, chaperone protein DnaJ; Provis 2e-07
COG0484371 COG0484, DnaJ, DnaJ-class molecular chaperone with 4e-06
PRK14297380 PRK14297, PRK14297, chaperone protein DnaJ; Provis 6e-06
PRK14300372 PRK14300, PRK14300, chaperone protein DnaJ; Provis 9e-06
PRK14287371 PRK14287, PRK14287, chaperone protein DnaJ; Provis 2e-05
TIGR02349354 TIGR02349, DnaJ_bact, chaperone protein DnaJ 5e-05
PRK14290365 PRK14290, PRK14290, chaperone protein DnaJ; Provis 2e-04
PRK14276380 PRK14276, PRK14276, chaperone protein DnaJ; Provis 0.001
>gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40 Back     alignment and domain information 
 Score =  165 bits (420), Expect = 1e-51
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 8/165 (4%)

Query: 86  APIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPE 145
           A +   L  +LE+ Y G  K++KI R V          ++ LT++I  G   G ++    
Sbjct: 1   ADLRYDLELTLEEAYFGKEKEIKIPRKVT-----RVREKKTLTVKIPAGVDDGQRLRLRG 55

Query: 146 KGNE-LRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTL 204
           +G+       P DL  +I  KPH +F+RDGNDL     ISL EAL G  +++ TL G  +
Sbjct: 56  EGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLYCEVPISLTEALLGGEIEVPTLGG-KV 114

Query: 205 TVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKL 249
            + I     P     +KG+GMP  +    RG+L ++  ++FP KL
Sbjct: 115 KLKIPPGTQPGTVLRLKGKGMPRLR-GGGRGDLYVEVKVEFPKKL 158

The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain Back     alignment and domain information
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ Back     alignment and domain information
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional Back     alignment and domain information
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 262
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 100.0
PTZ00037421 DnaJ_C chaperone protein; Provisional 100.0
PRK14296372 chaperone protein DnaJ; Provisional 100.0
PRK14286372 chaperone protein DnaJ; Provisional 100.0
PRK14295389 chaperone protein DnaJ; Provisional 100.0
PRK14285365 chaperone protein DnaJ; Provisional 100.0
PRK14277386 chaperone protein DnaJ; Provisional 100.0
PRK14281397 chaperone protein DnaJ; Provisional 100.0
PRK14288369 chaperone protein DnaJ; Provisional 100.0
PRK14297380 chaperone protein DnaJ; Provisional 100.0
PRK14278378 chaperone protein DnaJ; Provisional 100.0
PRK14276380 chaperone protein DnaJ; Provisional 100.0
PRK14279392 chaperone protein DnaJ; Provisional 100.0
PRK14280376 chaperone protein DnaJ; Provisional 100.0
PRK14298377 chaperone protein DnaJ; Provisional 100.0
PRK14284391 chaperone protein DnaJ; Provisional 100.0
PRK14287371 chaperone protein DnaJ; Provisional 100.0
PRK14299291 chaperone protein DnaJ; Provisional 100.0
PRK14291382 chaperone protein DnaJ; Provisional 100.0
PRK14294366 chaperone protein DnaJ; Provisional 100.0
PRK14282369 chaperone protein DnaJ; Provisional 100.0
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 100.0
PRK14290365 chaperone protein DnaJ; Provisional 100.0
PRK10767371 chaperone protein DnaJ; Provisional 100.0
PRK10266306 curved DNA-binding protein CbpA; Provisional 100.0
PRK14301373 chaperone protein DnaJ; Provisional 100.0
PRK14292371 chaperone protein DnaJ; Provisional 100.0
PRK14300372 chaperone protein DnaJ; Provisional 100.0
PRK14283378 chaperone protein DnaJ; Provisional 100.0
PRK14293374 chaperone protein DnaJ; Provisional 100.0
PRK14289386 chaperone protein DnaJ; Provisional 100.0
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 100.0
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 100.0
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 99.9
KOG0714306 consensus Molecular chaperone (DnaJ superfamily) [ 99.4
KOG0713336 consensus Molecular chaperone (DnaJ superfamily) [ 99.38
PRK14282369 chaperone protein DnaJ; Provisional 99.15
PRK14290365 chaperone protein DnaJ; Provisional 99.03
PF0155681 CTDII: DnaJ C terminal domain; InterPro: IPR002939 99.03
PRK14299291 chaperone protein DnaJ; Provisional 99.03
PRK14294366 chaperone protein DnaJ; Provisional 98.99
PRK14285365 chaperone protein DnaJ; Provisional 98.99
PRK14284391 chaperone protein DnaJ; Provisional 98.93
PRK10767371 chaperone protein DnaJ; Provisional 98.92
PRK14298377 chaperone protein DnaJ; Provisional 98.91
TIGR02349354 DnaJ_bact chaperone protein DnaJ. This model repre 98.89
PRK14287371 chaperone protein DnaJ; Provisional 98.88
PRK10266306 curved DNA-binding protein CbpA; Provisional 98.87
PRK14300372 chaperone protein DnaJ; Provisional 98.87
PRK14291382 chaperone protein DnaJ; Provisional 98.85
PRK14279392 chaperone protein DnaJ; Provisional 98.85
PRK14301373 chaperone protein DnaJ; Provisional 98.83
PRK14295389 chaperone protein DnaJ; Provisional 98.81
PRK14288369 chaperone protein DnaJ; Provisional 98.81
PRK14293374 chaperone protein DnaJ; Provisional 98.78
PRK14289386 chaperone protein DnaJ; Provisional 98.76
PRK14286372 chaperone protein DnaJ; Provisional 98.75
PRK14276380 chaperone protein DnaJ; Provisional 98.74
PRK14292371 chaperone protein DnaJ; Provisional 98.72
PRK14280376 chaperone protein DnaJ; Provisional 98.71
PRK14281397 chaperone protein DnaJ; Provisional 98.69
PRK14278378 chaperone protein DnaJ; Provisional 98.65
PRK14297380 chaperone protein DnaJ; Provisional 98.65
COG0484371 DnaJ DnaJ-class molecular chaperone with C-termina 98.62
PRK14283378 chaperone protein DnaJ; Provisional 98.6
PRK14277386 chaperone protein DnaJ; Provisional 98.59
PTZ00037421 DnaJ_C chaperone protein; Provisional 98.55
PRK14296372 chaperone protein DnaJ; Provisional 98.54
KOG0715288 consensus Molecular chaperone (DnaJ superfamily) [ 98.5
TIGR03835871 termin_org_DnaJ terminal organelle assembly protei 98.41
KOG0712337 consensus Molecular chaperone (DnaJ superfamily) [ 97.09
COG2214237 CbpA DnaJ-class molecular chaperone [Posttranslati 90.29
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-46  Score=345.35  Aligned_cols=180  Identities=29%  Similarity=0.491  Sum_probs=167.9

Q ss_pred             CcCCCCCCEEEEEecchhhhccCceEEEEeeEEEEeC----C-----------------CC-------------------
Q 024831           80 NALRKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDA----S-----------------GR-------------------  119 (262)
Q Consensus        80 ~~~~~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~----~-----------------G~-------------------  119 (262)
                      ++++++.||+++|+|||+|||+|++++|.+++.+.|.    +                 |.                   
T Consensus       110 ~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C  189 (371)
T COG0484         110 NRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQTCPTC  189 (371)
T ss_pred             CCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEEECCCC
Confidence            4578899999999999999999999999999999872    1                 10                   


Q ss_pred             ------------------cccccEEEEEEeCCCCCCCceEEeCccccCCC-CCCCCcEEEEEEeeCCCCeeeeccceEEE
Q 024831          120 ------------------PNTTEEILTIEIKPGWKKGTKITFPEKGNELR-NVIPSDLIFIIDEKPHSLFKRDGNDLVVT  180 (262)
Q Consensus       120 ------------------~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~-~~~~gDlv~~i~~~~h~~f~R~G~DL~~~  180 (262)
                                        ++.+.++|+|+||+|+.+|++|+++++|++.+ +.++|||||+|.+++|+.|.|+|+||+++
T Consensus       190 ~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~  269 (371)
T COG0484         190 NGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCE  269 (371)
T ss_pred             ccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecCCCeEECCCceEec
Confidence                              56788999999999999999999999999995 67789999999999999999999999999


Q ss_pred             EEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCCCCHHHHHHHHhh
Q 024831          181 QKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRL  260 (262)
Q Consensus       181 ~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~ls~~qk~~l~~~  260 (262)
                      ++|++.+|++|++|+|+||||+ ++|+||+.+|+|++++|+|+|||..+ ...+|||||+++|++|++||++||++|+++
T Consensus       270 ~~Is~~~AalG~~i~vptl~g~-~~l~ip~Gtq~G~~~rl~gkG~p~~~-~~~~GDl~v~v~v~~P~~ls~~q~~lL~~~  347 (371)
T COG0484         270 VPISFTEAALGGEIEVPTLDGR-VKLKIPAGTQTGEVFRLRGKGMPKLR-SGGRGDLYVRVKVETPKNLSDEQKELLEEF  347 (371)
T ss_pred             cccCHHHHhcCCEEEEEecCCC-EEEecCCCCccCcEEEEcCCCccccC-CCCcCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence            9999999999999999999999 99999999999999999999999866 567799999999999999999999999987


Q ss_pred             C
Q 024831          261 I  261 (262)
Q Consensus       261 l  261 (262)
                      .
T Consensus       348 ~  348 (371)
T COG0484         348 A  348 (371)
T ss_pred             H
Confidence            5

>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14282 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14290 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>PRK14299 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14294 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14285 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14284 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10767 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14298 chaperone protein DnaJ; Provisional Back     alignment and domain information
>TIGR02349 DnaJ_bact chaperone protein DnaJ Back     alignment and domain information
>PRK14287 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK10266 curved DNA-binding protein CbpA; Provisional Back     alignment and domain information
>PRK14300 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14291 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14279 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14301 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14295 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14288 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14293 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14289 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14286 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14276 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14292 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14280 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14281 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14278 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14297 chaperone protein DnaJ; Provisional Back     alignment and domain information
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14283 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PRK14277 chaperone protein DnaJ; Provisional Back     alignment and domain information
>PTZ00037 DnaJ_C chaperone protein; Provisional Back     alignment and domain information
>PRK14296 chaperone protein DnaJ; Provisional Back     alignment and domain information
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ Back     alignment and domain information
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
3agz_A190 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 3e-43
2qld_A183 Human Hsp40 Hdj1 Length = 183 4e-43
3agx_A181 Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi 4e-43
2q2g_A180 Crystal Structure Of Dimerization Domain Of Hsp40 F 2e-30
2b26_A173 The Crystal Structure Of The Protein Complex Of Yea 2e-28
1c3g_A170 S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1 2e-28
1nlt_A248 The Crystal Structure Of Hsp40 Ydj1 Length = 248 3e-23
1xao_A121 Hsp40-Ydj1 Dimerization Domain Length = 121 6e-12
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 Length = 190 Back     alignment and structure 
Iteration: 1

 Score =  171 bits (434), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 83/181 (45%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Query: 83  RKAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEE-ILTIEIKPGWKKGTKI 141
           ++  P+   L  SLE++Y G TKKMKIS   ++  G+    E+ ILTIE+K GWK+GTKI
Sbjct: 9   KQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKI 68
Query: 142 TFPEKGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDG 201
           TFP++G++  N IP+D++F++ +KPH++FKRDG+D++   +ISL EAL G TV + TLDG
Sbjct: 69  TFPKEGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDG 128
Query: 202 RTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLI 261
           RT+ V    VI P     + GEG+P+PK P KRG+L I+F + FP ++    ++ L++++
Sbjct: 129 RTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 188
Query: 262 P 262
           P
Sbjct: 189 P 189
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1 Length = 183 Back     alignment and structure
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Length = 181 Back     alignment and structure
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180 Back     alignment and structure
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173 Back     alignment and structure
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170 Back     alignment and structure
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248 Back     alignment and structure
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain Length = 121 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query262
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 3e-96
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 6e-95
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 2e-90
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 3e-45
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 3e-06
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 2e-39
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 4e-33
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 5e-13
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181 Back     alignment and structure
 Score =  279 bits (715), Expect = 3e-96
 Identities = 83/177 (46%), Positives = 124/177 (70%), Gaps = 1/177 (0%)

Query: 87  PIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEE-ILTIEIKPGWKKGTKITFPE 145
           P+   L  SLE++Y G TKKMKIS   ++  G+    E+ ILTIE+K GWK+GTKITFP+
Sbjct: 4   PVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPK 63

Query: 146 KGNELRNVIPSDLIFIIDEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLT 205
           +G++  N IP+D++F++ +KPH++FKRDG+D++   +ISL EAL G TV + TLDGRT+ 
Sbjct: 64  EGDQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIP 123

Query: 206 VPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSKLTTEQKSGLKRLIP 262
           V    VI P     + GEG+P+PK P KRG+L I+F + FP ++    ++ L++++P
Sbjct: 124 VVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 180
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180 Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170 Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248 Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248 Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 100.0
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 100.0
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 100.0
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 100.0
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 100.0
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 99.95
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 99.95
3i38_A109 Putative chaperone DNAJ; structural genomics, prot 99.28
1xao_A121 YDJ1, mitochondrial protein import protein MAS5; b 99.19
3agx_A181 DNAJ homolog subfamily B member 1; chaperone; 1.85 98.91
1c3g_A170 Heat shock protein 40; beta sheets, short helices, 98.9
2q2g_A180 HSP40 protein, heat shock 40 kDa protein, putative 98.89
1nlt_A248 Protein YDJ1, mitochondrial protein import protein 98.85
3lz8_A329 Putative chaperone DNAJ; structure genomics, struc 98.71
2ctt_A104 DNAJ homolog subfamily A member 3; ZING finger, be 96.72
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
Probab=100.00  E-value=5.3e-52  Score=350.39  Aligned_cols=178  Identities=40%  Similarity=0.722  Sum_probs=168.6

Q ss_pred             CCCCEEEEEecchhhhccCceEEEEeeEEEEeCCCCcccccEEEEEEeCCCCCCCceEEeCccccC-CCCCCCCcEEEEE
Q 024831           84 KAAPIERTLPCSLEDLYKGTTKKMKISRDVIDASGRPNTTEEILTIEIKPGWKKGTKITFPEKGNE-LRNVIPSDLIFII  162 (262)
Q Consensus        84 ~g~di~~~l~itLee~~~G~~k~i~~~r~~~~~~G~~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~-~~~~~~gDlv~~i  162 (262)
                      +++|++++|+|||||||+||+++++++|++.|++| ++.+.++++|+|||||++|++|+|+|+|++ .+++.+|||+|+|
T Consensus         2 ~g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~g-~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i   80 (180)
T 2q2g_A            2 APRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEHK-VRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLII   80 (180)
T ss_dssp             --CEEEEEEEECHHHHHHCEEEEEEEEEEEEETTE-EEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEE
T ss_pred             CCCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCCc-eEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEE
Confidence            36799999999999999999999999999999886 577889999999999999999999999999 5888999999999


Q ss_pred             EeeCCCCeeeeccceEEEEEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEE
Q 024831          163 DEKPHSLFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFN  242 (262)
Q Consensus       163 ~~~~h~~f~R~G~DL~~~~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~  242 (262)
                      ++++|+.|+|+|+||+++++|+|++||+|++++|+||||+.+.|++|++++||++++|+|+|||..++++.+|||||+|+
T Consensus        81 ~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~  160 (180)
T 2q2g_A           81 QTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFD  160 (180)
T ss_dssp             EECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEE
T ss_pred             EEEecccEEEcCCEEEEEEEcCHHHHhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEE
Confidence            99999999999999999999999999999999999999998999999999999999999999998776678999999999


Q ss_pred             EeCCCCCCHHHHHHHHhhCC
Q 024831          243 IKFPSKLTTEQKSGLKRLIP  262 (262)
Q Consensus       243 V~~P~~ls~~qk~~l~~~l~  262 (262)
                      |+||++||++||++|+++||
T Consensus       161 V~~P~~Ls~~q~~~l~~~~p  180 (180)
T 2q2g_A          161 ICFPKSLTPEQKKLIKEALD  180 (180)
T ss_dssp             EECCSCCCHHHHHHHHHHC-
T ss_pred             EECCCCCCHHHHHHHHHhcC
Confidence            99999999999999999986
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Back     alignment and structure
>3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Back     alignment and structure
>1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Back     alignment and structure
>2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Back     alignment and structure
>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Back     alignment and structure
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Back     alignment and structure
>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 262
d1c3ga290 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba 5e-28
d1nlta280 b.4.1.1 (A:258-337) Mitochondrial protein import p 2e-20
d1c3ga180 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba 2e-20
d1nlta174 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei 1e-13
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90 Back     information, alignment and structure

class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (251), Expect = 5e-28
 Identities = 36/88 (40%), Positives = 54/88 (61%)

Query: 170 FKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPK 229
           FKRDG+DL+ T  +S  E+L G++  + T+DGRTL +     + P+      G+GMP PK
Sbjct: 2   FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPK 61

Query: 230 EPSKRGNLRIKFNIKFPSKLTTEQKSGL 257
            PS+RGNL +K+ + +P  L   QK  +
Sbjct: 62  NPSQRGNLIVKYKVDYPISLNDAQKRAI 89
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query262
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.95
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 99.89
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.83
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.81
d1nlta174 Mitochondrial protein import protein mas5 (Hsp40, 99.41
d1c3ga290 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 99.18
d1nlta280 Mitochondrial protein import protein mas5 (Hsp40, 99.11
d1c3ga180 Heat shock protein 40 Sis1 {Baker's yeast (Sacchar 98.87
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All beta proteins
fold: HSP40/DnaJ peptide-binding domain
superfamily: HSP40/DnaJ peptide-binding domain
family: HSP40/DnaJ peptide-binding domain
domain: Heat shock protein 40 Sis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.1e-28  Score=183.53  Aligned_cols=90  Identities=40%  Similarity=0.754  Sum_probs=86.8

Q ss_pred             CeeeeccceEEEEEecHHHHhCCCEEEEecCCCcEEEEeeCCccCCCcEEEEcCCCCCCCCCCCCCCCEEEEEEEeCCCC
Q 024831          169 LFKRDGNDLVVTQKISLVEALTGYTVQLTTLDGRTLTVPINSVISPTYEEVIKGEGMPIPKEPSKRGNLRIKFNIKFPSK  248 (262)
Q Consensus       169 ~f~R~G~DL~~~~~I~l~~Al~G~~i~i~tldG~~l~v~i~~~~~~g~~~~i~g~GmP~~~~~~~rGDL~V~~~V~~P~~  248 (262)
                      .|+|+|+||+++++|++.||++|++++|+|+||+.+.|++|+++++|++++|+|+|||..++++.||||||+|+|.+|++
T Consensus         1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~   80 (90)
T d1c3ga2           1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPIS   80 (90)
T ss_dssp             SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSS
T ss_pred             CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCC
Confidence            49999999999999999999999999999999999999999999999999999999999887888999999999999999


Q ss_pred             CCHHHHHHHH
Q 024831          249 LTTEQKSGLK  258 (262)
Q Consensus       249 ls~~qk~~l~  258 (262)
                      ||++||++|+
T Consensus        81 ls~~qk~~lE   90 (90)
T d1c3ga2          81 LNDAQKRAID   90 (90)
T ss_dssp             CCTTHHHHTC
T ss_pred             CCHHHHHhhC
Confidence            9999999874
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure