Citrus Sinensis ID: 024855

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-

MSVSTSTTEGNQASSGDDKYPIPLTSYINTISSSSSTSSRSGSTSSIMSEIEEEEEEEENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF

ccccccccccccccccccccccccccHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHccccccEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccHHHHHHHHHHHccccEEEEccccccccEEEccccccccccccccccEEEEEEc

ccEccccccccccccccccccccccEEEEcccccccHHHccccccccEccccccccHcccccccccccHHHHHHHHcccccccccccccccccccEEEEEcccccccccccEEEEEEccccccHHHHHHHHHHHcccccEEEEEEEcccccccccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHHHHHHHccccEEEEEcccccccEcccccccccccHHEEEEEEEEEEcc

msvststtegnqassgddkypipltsyintissssstssrsgstssiMSEIEeeeeeeenynssrsnsSQLLSeindgngmpmplapikeeiessffsfdvangngtqeeDIIYVAVGKSQSSMDALSWTLrhavnpstLIFLIHVfpqvkfvpsplgklprnqvnpeQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF

msvststtegnqassgddkypiPLTSYIntissssstssrsgstsSIMSEIEEEEEeeenynssrsnsSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILdlipvlniRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF

MSVSTSTTEGNQASSGDDKYPIPLtsyintissssstssrsgstssimseieeeeeeeenynssrsnssQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF

**********************************************************************************************SFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPL*************************QLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFC*

*******************YPIPLTSYIN************************************************************************************YVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPL******************QETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKS************GIGTLILFYFSILLFCF

***************GDDKYPIPLTSYINTI***************************************LLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF

*****************DKYPIPLTSYINTIS*************************************QLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSSLRFHFHSINFNGIGTLILFYFSILLFCF

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		261	2.2.26 [Sep-21-2011]
Q8GUH1		834	U-box domain-containing p	no	no	0.455	0.142	0.319	1e-08
Q9SW11		835	U-box domain-containing p	no	no	0.467	0.146	0.25	7e-06
Q683D5		400	U-box domain-containing p	no	no	0.409	0.267	0.260	5e-05
Q9FGD7		765	Putative U-box domain-con	no	no	0.386	0.132	0.298	9e-05
Q8GZ84		435	U-box domain-containing p	no	no	0.455	0.273	0.270	0.0005

>sp\|Q8GUH1\|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2	Back alignment and function desciption

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 3/122 (2%)

Query: 110 EDIIYVAVGKS-QSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPE 168
           ++ I+VAV K    S   L W L++       I LIHV    + +P    K P   V  E
Sbjct: 44  DEKIFVAVDKHVAKSKSTLIWALQNTGGKK--ICLIHVHQPSQMIPLMGAKFPVGAVKEE 101

Query: 169 QLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVG 228
           ++  F  +E  K   +L  +L  C Q  V  + + IE + +   I+ LI  L IRKLV+G
Sbjct: 102 EVRVFREKEREKVHMILDDYLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKLVMG 161

Query: 229 TT 230
             
Sbjct: 162 AA 163

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp\|Q9SW11\|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2	Back alignment and function description

>sp\|Q683D5\|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37 PE=2 SV=1	Back alignment and function description

>sp\|Q9FGD7\|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1	Back alignment and function description

>sp\|Q8GZ84\|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		261
224089553		289	predicted protein [Populus trichocarpa]	0.697	0.629	0.535	3e-52
255579152		264	ATP binding protein, putative [Ricinus c	0.712	0.704	0.565	3e-51
225467979		275	PREDICTED: U-box domain-containing prote	0.593	0.563	0.609	6e-51
296083524		223	unnamed protein product [Vitis vinifera]	0.559	0.654	0.635	6e-51
356555775		246	PREDICTED: U-box domain-containing prote	0.547	0.581	0.589	2e-45
388491918		254	unknown [Lotus japonicus]	0.471	0.484	0.656	9e-44
356522087		295	PREDICTED: U-box domain-containing prote	0.628	0.555	0.541	2e-42
356532376		449	PREDICTED: uncharacterized protein LOC10	0.528	0.307	0.588	5e-42
351728033		246	uncharacterized protein LOC100527773 [Gl	0.486	0.516	0.641	5e-41
449434410		279	PREDICTED: uncharacterized protein LOC10	0.532	0.498	0.552	9e-40

>gi\|224089553\|ref\|XP_002308753.1\| predicted protein [Populus trichocarpa] gi\|222854729\|gb\|EEE92276.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  211 bits (536), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 106/198 (53%), Positives = 147/198 (74%), Gaps = 16/198 (8%)

Query: 55  EEEEENYNSSRSNSSQLLSEINDGNGMPMPLAPIKEEIESSFFSFDVANGNGTQEEDIIY 114
           E EEE Y+S        L EIN G    +PL  IKE+IE S FSFDV    G  ++D +Y
Sbjct: 44  EIEEEKYSSD-------LFEINHG----VPLESIKEDIEGSVFSFDVY---GEHQKDCVY 89

Query: 115 VAVGKSQSSMDALSWTLRHAV-NPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETF 173
           V VGKS+SSMDALSWTL++A+ + +T++FLIH+FP++ ++PSPLG+LP++QV+ +Q+E +
Sbjct: 90  VGVGKSESSMDALSWTLKNAIIDSNTMVFLIHIFPEIHYIPSPLGRLPKSQVSAQQVENY 149

Query: 174 MAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTKSS 233
           MAQE  KRR+LLQKF++ CS SKV VDT+L+ESD V KA++DLI V+N+RKL++GT+KS+
Sbjct: 150 MAQERDKRRELLQKFINMCSASKVKVDTILVESDAVGKAMMDLITVVNMRKLILGTSKSN 209

Query: 234 LRFHFHSINFNGIGTLIL 251
           LR    S   NGI   ++
Sbjct: 210 LR-KLRSKRGNGIADQVI 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255579152\|ref\|XP_002530423.1\| ATP binding protein, putative [Ricinus communis] gi\|223530031\|gb\|EEF31954.1\| ATP binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225467979\|ref\|XP_002269050.1\| PREDICTED: U-box domain-containing protein 33 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|296083524\|emb\|CBI23514.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356555775\|ref\|XP_003546205.1\| PREDICTED: U-box domain-containing protein 35-like [Glycine max]	Back alignment and taxonomy information

>gi\|388491918\|gb\|AFK34025.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi\|356522087\|ref\|XP_003529681.1\| PREDICTED: U-box domain-containing protein 33-like [Glycine max]	Back alignment and taxonomy information

>gi\|356532376\|ref\|XP_003534749.1\| PREDICTED: uncharacterized protein LOC100777008 [Glycine max]	Back alignment and taxonomy information

>gi\|351728033\|ref\|NP_001237181.1\| uncharacterized protein LOC100527773 [Glycine max] gi\|255633178\|gb\|ACU16945.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|449434410\|ref\|XP_004134989.1\| PREDICTED: uncharacterized protein LOC101213489 [Cucumis sativus] gi\|449520169\|ref\|XP_004167106.1\| PREDICTED: uncharacterized LOC101213489 [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		261
TAIR\|locus:2050669		834	AT2G45910 [Arabidopsis thalian	0.448	0.140	0.325	8.6e-08
TAIR\|locus:2117343		835	AT4G25160 [Arabidopsis thalian	0.463	0.144	0.252	3.1e-06
TAIR\|locus:504954932		789	AT5G57035 [Arabidopsis thalian	0.440	0.145	0.294	8.8e-06
TAIR\|locus:2082802		294	AT3G61410 "AT3G61410" [Arabido	0.482	0.428	0.259	1.3e-05
TAIR\|locus:2061012		788	AT2G24370 [Arabidopsis thalian	0.501	0.166	0.270	3.6e-05
TAIR\|locus:2128131		764	AT4G31230 [Arabidopsis thalian	0.486	0.166	0.253	7.8e-05
TAIR\|locus:2098816		435	AT3G61390 [Arabidopsis thalian	0.494	0.296	0.272	0.00054
TAIR\|locus:2050659		400	AT2G45920 [Arabidopsis thalian	0.229	0.15	0.349	0.00064

TAIR\|locus:2050669 AT2G45910 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 146 (56.5 bits), Expect = 8.6e-08, P = 8.6e-08
 Identities = 39/120 (32%), Positives = 58/120 (48%)

Query:   110 EDIIYVAVGKSQS-SMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPE 168
             ++ I+VAV K  + S   L W L++       I LIHV    + +P    K P   V  E
Sbjct:    44 DEKIFVAVDKHVAKSKSTLIWALQNTGGKK--ICLIHVHQPSQMIPLMGAKFPVGAVKEE 101

Query:   169 QLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVG 228
             ++  F  +E  K   +L  +L  C Q  V  + + IE + +   I+ LI  L IRKLV+G
Sbjct:   102 EVRVFREKEREKVHMILDDYLRICQQRGVRAEKMFIEMESIENGIVQLISELGIRKLVMG 161

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR\|locus:2117343 AT4G25160 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:504954932 AT5G57035 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082802 AT3G61410 "AT3G61410" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2061012 AT2G24370 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2128131 AT4G31230 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2098816 AT3G61390 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2050659 AT2G45920 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.00060048	hypothetical protein (289 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		261
cd01989		146	cd01989, STK_N, The N-terminal domain of Eukaryoti	2e-22
cd00293		130	cd00293, USP_Like, Usp: Universal stress protein f	2e-11
pfam00582		139	pfam00582, Usp, Universal stress protein family	3e-04

>gnl\|CDD\|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

 Score = 89.6 bits (223), Expect = 2e-22
 Identities = 40/127 (31%), Positives = 63/127 (49%), Gaps = 10/127 (7%)

Query: 112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLE 171
            + VAV K + S +AL W L +       I L+HV P +  +PS  GKL       ++ +
Sbjct: 1   SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEED 60

Query: 172 TFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK 231
                   + ++LL  +   CS+  V  + V++E D VAKAI++ +    I KLV+G   
Sbjct: 61  K-------EAKELLLPYRCFCSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMG--- 110

Query: 232 SSLRFHF 238
           +S   HF
Sbjct: 111 ASSDNHF 117

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding. Length = 146

>gnl\|CDD\|238182 cd00293, USP_Like, Usp: Universal stress protein family	Back alignment and domain information

>gnl\|CDD\|216006 pfam00582, Usp, Universal stress protein family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		261
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	99.94
PRK15456		142	universal stress protein UspG; Provisional	99.93
PRK15005		144	universal stress protein F; Provisional	99.93
PRK09982		142	universal stress protein UspD; Provisional	99.91
PRK15118		144	universal stress global response regulator UspA; P	99.9
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	99.87
PF00582		140	Usp: Universal stress protein family; InterPro: IP	99.86
PRK10116		142	universal stress protein UspC; Provisional	99.86
cd01987		124	USP_OKCHK USP domain is located between the N-term	99.84
PRK11175		305	universal stress protein UspE; Provisional	99.84
PRK11175		305	universal stress protein UspE; Provisional	99.83
COG0589		154	UspA Universal stress protein UspA and related nuc	99.79
cd00293		130	USP_Like Usp: Universal stress protein family. The	99.78
PRK12652		357	putative monovalent cation/H+ antiporter subunit E	99.58
PRK10490		895	sensor protein KdpD; Provisional	99.09
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	98.85
cd01984		86	AANH_like Adenine nucleotide alpha hydrolases supe	98.49
TIGR02432		189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	97.12
PLN03159		832	cation/H(+) antiporter 15; Provisional	96.96
PF01171		182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	96.46
cd01992		185	PP-ATPase N-terminal domain of predicted ATPase of	96.35
PRK12342		254	hypothetical protein; Provisional	95.32
cd01993		185	Alpha_ANH_like_II This is a subfamily of Adenine n	94.66
PLN03159		832	cation/H(+) antiporter 15; Provisional	94.34
PRK03359		256	putative electron transfer flavoprotein FixA; Revi	93.38
PRK10696		258	tRNA 2-thiocytidine biosynthesis protein TtcA; Pro	93.35
COG0037		298	MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle	93.24
COG2086		260	FixA Electron transfer flavoprotein, beta subunit	90.84
TIGR00268		252	conserved hypothetical protein TIGR00268. The N-te	90.42
PRK10660		436	tilS tRNA(Ile)-lysidine synthetase; Provisional	86.21
cd01990		202	Alpha_ANH_like_I This is a subfamily of Adenine nu	85.22
PRK13820		394	argininosuccinate synthase; Provisional	84.55
PRK14665		360	mnmA tRNA-specific 2-thiouridylase MnmA; Provision	83.01
PRK05253		301	sulfate adenylyltransferase subunit 2; Provisional	82.54
cd01712		177	ThiI ThiI is required for thiazole synthesis in th	82.04
PF00875		165	DNA_photolyase: DNA photolyase from Prosite.; Inte	81.37
TIGR00342		371	thiazole biosynthesis/tRNA modification protein Th	81.03
PF01012		164	ETF: Electron transfer flavoprotein domain; InterP	80.73

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

Probab=99.94  E-value=9.7e-26  Score=183.85  Aligned_cols=138  Identities=28%  Similarity=0.442  Sum_probs=112.6

Q ss_pred             eEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 024855          112 IIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKFLDT  191 (261)
Q Consensus       112 kILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~~~~  191 (261)
                      +||||+|+|+.|++||+||+++|+..+++|++|||+++........+       ..+....+.++.++++++.++++.+.
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~~   73 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSG-------KLEVASAYKQEEDKEAKELLLPYRCF   73 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCcc-------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999976432111100       11223445566677888899999999


Q ss_pred             hhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCC-CCCcccccccceec-cHHHHHhccCC--cceee
Q 024855          192 CSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTT-KSSLRFHFHSINFN-GIGTLILFYFS--ILLFC  260 (261)
Q Consensus       192 ~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr-~sgl~~~~r~l~lG-SVA~~Vlr~A~--ipv~~  260 (261)
                      |...+++++..++.|+++++.|+++|+++++|+||||+| ++++.+    +++| ||+++|+++++  ||||.
T Consensus        74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~----~~~gssva~~Vi~~a~~~c~Vlv  142 (146)
T cd01989          74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSM----KFKKSDVASSVLKEAPDFCTVYV  142 (146)
T ss_pred             HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceee----cccCCchhHHHHhcCCCCceEEE
Confidence            988899999988888777999999999999999999999 555555    4445 79999999999  99986

>PRK15456 universal stress protein UspG; Provisional	Back alignment and domain information

>PRK15005 universal stress protein F; Provisional	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents	Back alignment and domain information

>PRK10116 universal stress protein UspC; Provisional	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>PRK11175 universal stress protein UspE; Provisional	Back alignment and domain information

>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)	Back alignment and domain information

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]	Back alignment and domain information

>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	Back alignment and domain information

>PRK12342 hypothetical protein; Provisional	Back alignment and domain information

>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>PLN03159 cation/H(+) antiporter 15; Provisional	Back alignment and domain information

>PRK03359 putative electron transfer flavoprotein FixA; Reviewed	Back alignment and domain information

>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	Back alignment and domain information

>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]	Back alignment and domain information

>TIGR00268 conserved hypothetical protein TIGR00268	Back alignment and domain information

>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional	Back alignment and domain information

>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>PRK13820 argininosuccinate synthase; Provisional	Back alignment and domain information

>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional	Back alignment and domain information

>PRK05253 sulfate adenylyltransferase subunit 2; Provisional	Back alignment and domain information

>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway	Back alignment and domain information

>PF00875 DNA_photolyase: DNA photolyase from Prosite	Back alignment and domain information

>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI	Back alignment and domain information

>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		261
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	4e-07
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	4e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
3olq_A		319	Universal stress protein E; structural genomics, P	6e-04

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138	Back alignment and structure

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 19/124 (15%), Positives = 44/124 (35%), Gaps = 25/124 (20%)

Query: 113 IYVAVGKSQSSMDALSWTLRHAV-NPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLE 171
           +  A+  +++   A  + L     +    + LIHV P+       +             +
Sbjct: 4   LLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAV---------LAAYD 54

Query: 172 TFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAIL------DLIPVLNIRKL 225
               +E  K + L QKF    ++  +    V+ E +   + +L      +L+        
Sbjct: 55  EIEMKEEEKAKLLTQKFSTFFTEKGINPFVVIKEGE-PVEMVLEEAKDYNLL-------- 105

Query: 226 VVGT 229
           ++G+
Sbjct: 106 IIGS 109

PyMOL of 3idf

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		261
3s3t_A		146	Nucleotide-binding protein, universal stress PROT	99.93
1mjh_A		162	Protein (ATP-binding domain of protein MJ0577); hy	99.93
3hgm_A		147	Universal stress protein TEAD; rossman fold, signa	99.92
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	99.91
3fg9_A		156	Protein of universal stress protein USPA family; A	99.91
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	99.91
2dum_A		170	Hypothetical protein PH0823; conserved hypothetica	99.9
1tq8_A		163	Hypothetical protein RV1636; MTCY01B2.28, structur	99.9
3fdx_A		143	Putative filament protein / universal stress PROT;	99.9
2z08_A		137	Universal stress protein family; uncharacterized c	99.9
3dlo_A		155	Universal stress protein; unknown function, struct	99.89
3tnj_A		150	Universal stress protein (USP); structural genomic	99.89
3mt0_A		290	Uncharacterized protein PA1789; structural genomic	99.85
1jmv_A		141	USPA, universal stress protein A; chaperone; 1.85A	99.85
3olq_A		319	Universal stress protein E; structural genomics, P	99.84
1q77_A		138	Hypothetical protein AQ_178; structural genomics,	99.83
3cis_A		309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.83
3cis_A		309	Uncharacterized protein; alpha/beta hydrolase, ATP	99.83
3olq_A		319	Universal stress protein E; structural genomics, P	99.83
3ab8_A		268	Putative uncharacterized protein TTHA0350; tandem-	99.82
3loq_A		294	Universal stress protein; structural genomics, PSI	99.81
3loq_A		294	Universal stress protein; structural genomics, PSI	99.81
3ab8_A		268	Putative uncharacterized protein TTHA0350; tandem-	99.79
3mt0_A		290	Uncharacterized protein PA1789; structural genomic	99.78
3a2k_A		464	TRNA(Ile)-lysidine synthase; ligase, pseudo-knot,	94.86
1wy5_A		317	TILS, hypothetical UPF0072 protein AQ_1887; N-type	94.23
2iel_A		138	Hypothetical protein TT0030; TT0030,thermus thermo	94.04
1ni5_A		433	Putative cell cycle protein MESJ; structural genom	90.42
1zun_A		325	Sulfate adenylyltransferase subunit 2; beta barrel	81.49
1o97_C		264	Electron transferring flavoprotein beta-subunit; F	80.94
1efv_B		255	Electron transfer flavoprotein; electron transport	80.73

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0	Back alignment and structure

Probab=99.93  E-value=3.2e-25  Score=177.62  Aligned_cols=139  Identities=12%  Similarity=0.097  Sum_probs=116.2

Q ss_pred             CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 024855          109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRNQVNPEQLETFMAQETGKRRQLLQKF  188 (261)
Q Consensus       109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g~~~~~~~~~e~~e~~~~~~~e~~~~~Lek~  188 (261)
                      .+++||||+|+|+.+.+|++||+.+|+..+++|++|||+++......  .       .......+.++.++++++.++++
T Consensus         4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~l~~~   74 (146)
T 3s3t_A            4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTP--A-------LDPVLSELLDAEAAHAKDAMRQR   74 (146)
T ss_dssp             CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCG--G-------GHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccc--c-------cccccHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999988999999999987542110  0       00123445566778888899999


Q ss_pred             HHHhhcCCC-cEEEEEEEcCChHHHHHH-hhhhCCCcEEEECCC-CCCcccccccceeccHHHHHhccCCcceeeC
Q 024855          189 LDTCSQSKV-MVDTVLIESDLVAKAILD-LIPVLNIRKLVVGTT-KSSLRFHFHSINFNGIGTLILFYFSILLFCF  261 (261)
Q Consensus       189 ~~~~~~~gV-~ve~~vieGd~~aeaIv~-~A~e~~aDLIVmGsr-~sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~  261 (261)
                      .+.+...|+ +++..+..|+ +++.|++ +|++.++||||||+| ++++.+    +++||++++|+++++||||.+
T Consensus        75 ~~~~~~~g~~~~~~~~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~~~~~----~~~Gs~~~~vl~~~~~pVlvV  145 (146)
T 3s3t_A           75 QQFVATTSAPNLKTEISYGI-PKHTIEDYAKQHPEIDLIVLGATGTNSPHR----VAVGSTTSYVVDHAPCNVIVI  145 (146)
T ss_dssp             HHHHTTSSCCCCEEEEEEEC-HHHHHHHHHHHSTTCCEEEEESCCSSCTTT----CSSCHHHHHHHHHCSSEEEEE
T ss_pred             HHHHHhcCCcceEEEEecCC-hHHHHHHHHHhhcCCCEEEECCCCCCCcce----EEEcchHHHHhccCCCCEEEe
Confidence            999988899 8998888886 5899999 999999999999999 455554    678999999999999999963

PyMOL of 3s3t

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4	Back alignment and structure

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0	Back alignment and structure

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}	Back alignment and structure

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}	Back alignment and structure

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4	Back alignment and structure

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4	Back alignment and structure

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*	Back alignment and structure

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A	Back alignment and structure

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*	Back alignment and structure

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*	Back alignment and structure

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}	Back alignment and structure

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4	Back alignment and structure

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}	Back alignment and structure

>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4	Back alignment and structure

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*	Back alignment and structure

>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*	Back alignment and structure

>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}	Back alignment and structure

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*	Back alignment and structure

>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}	Back alignment and structure

>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}	Back alignment and structure

>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*	Back alignment and structure

>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4	Back alignment and structure

>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1	Back alignment and structure

>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2	Back alignment and structure

>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*	Back alignment and structure

>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		261
d2gm3a1		171	c.26.2.4 (A:5-175) Putative ethylene-responsive pr	9e-08
d1mjha_		160	c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archa	1e-04
d1jmva_		140	c.26.2.4 (A:) Universal stress protein A, UspA {Ha	0.001

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 48.3 bits (114), Expect = 9e-08
 Identities = 27/126 (21%), Positives = 42/126 (33%), Gaps = 10/126 (7%)

Query: 113 IYVAV---------GKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLGKLPRN 163
           + VAV           S S   A  WTL   V  +T  F I +             +   
Sbjct: 4   VMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSI 63

Query: 164 QVNPEQLETFMAQETGKRRQLLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIR 223
             +PE           K   LL+ F++ C +  V  +   I++      I   +  +   
Sbjct: 64  YASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAW-IKTGDPKDVICQEVKRVRPD 122

Query: 224 KLVVGT 229
            LVVG+
Sbjct: 123 FLVVGS 128

PyMOL of d2gm3a1

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 160	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Length = 140	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		261
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	99.94
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	99.93
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	99.93
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	99.9
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	99.88
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	99.84
d1wy5a1		216	TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId	95.58
d1ni5a1		227	tRNA-Ile-lysidine synthetase, TilS, N-terminal dom	92.6
d3clsc1		262	Small, beta subunit of electron transfer flavoprot	91.67
d1efvb_		252	Small, beta subunit of electron transfer flavoprot	89.66
d1efpb_		246	Small, beta subunit of electron transfer flavoprot	89.22
d1np7a2		204	Cryptochrome {Synechocystis sp., pcc 6803 [TaxId:	88.7
d2c5sa1		218	Thiamine biosynthesis protein ThiI, C-terminal dom	85.52

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=5.6e-27  Score=190.21  Aligned_cols=148  Identities=11%  Similarity=0.093  Sum_probs=116.8

Q ss_pred             CCCeEEEeecCChhHHHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCCCC--CCC---CCCCChhHHHHHHHHHHHHHHH
Q 024855          109 EEDIIYVAVGKSQSSMDALSWTLRHAVNPSTLIFLIHVFPQVKFVPSPLG--KLP---RNQVNPEQLETFMAQETGKRRQ  183 (261)
Q Consensus       109 ~~kkILVaVDgSe~S~~AL~~Al~~A~~~ga~L~LLHVv~~~~~~p~~~g--~~~---~~~~~~e~~e~~~~~~~e~~~~  183 (261)
                      -|+|||||+|+|+.+++|++||+++|+..+++|++|||+++.........  ...   ......+...++.++..+++++
T Consensus         2 m~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (160)
T d1mjha_           2 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN   81 (160)
T ss_dssp             CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred             CcCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999976542211100  000   0011223334455666778889


Q ss_pred             HHHHHHHHhhcCCCcEEEEEEEcCChHHHHHHhhhhCCCcEEEECCCC-CCcccccccceeccHHHHHhccCCcceeeC
Q 024855          184 LLQKFLDTCSQSKVMVDTVLIESDLVAKAILDLIPVLNIRKLVVGTTK-SSLRFHFHSINFNGIGTLILFYFSILLFCF  261 (261)
Q Consensus       184 ~Lek~~~~~~~~gV~ve~~vieGd~~aeaIv~~A~e~~aDLIVmGsr~-sgl~~~~r~l~lGSVA~~Vlr~A~ipv~~~  261 (261)
                      .++++.+.+...|++++..+..|+ +++.|+++|+++++||||||+|+ +++.+    +++||++++|+++++||||++
T Consensus        82 ~l~~~~~~~~~~gv~~~~~~~~G~-~~~~I~~~a~~~~~dliV~G~~~~~~~~~----~~~GS~a~~vl~~s~~pVlvV  155 (160)
T d1mjha_          82 KMENIKKELEDVGFKVKDIIVVGI-PHEEIVKIAEDEGVDIIIMGSHGKTNLKE----ILLGSVTENVIKKSNKPVLVV  155 (160)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEEEEC-HHHHHHHHHHHTTCSEEEEESCCSSCCTT----CSSCHHHHHHHHHCCSCEEEE
T ss_pred             HHHHHHHHHHhcCCeEEEEEEecc-HHHHHhhhhhccccceEEeccCCCCcccc----cccCcHHHHHHhcCCCCEEEE
Confidence            999999999999999999988886 58999999999999999999994 55555    778999999999999999974

PyMOL of d1mjha_

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]}	Back information, alignment and structure

>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]}	Back information, alignment and structure

>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]}	Back information, alignment and structure

>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure