Citrus Sinensis ID: 024865

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Secondary Structure (PSIPRED)
ccEEEEEEcccccccHHHHHHHHHHHHHHHccccccEEEEEEcccEEEEcccccccHHHHHHHHccccccccccccccccccEEEEEcccccccEEEEEEEccccHHHHHHHHHHHHccEEEEEEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHHcccccEEEEEcccccccccccccEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccccEEEEEEEEEEcccccccccHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccHcccHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccHHHHHHHccccccccccccccccccEEEEEEccccccEEEEEEEEcccHHHHHHHHHHHHHccEEEEEEEEEEcccccEEEEEEEEEccccEEccHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEccEEccccccccEHHHHHHHHHHcccEEEEEEEcEEEcccccEEEEEEEccccccccccHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITacsqassflpSAIIDMLhldmpvelpsgsltcsnvsvtidnslspghtLVQIVCQDHKGLLYDIMRTLKDYNIqvsygrfsrrqrgnceidlfimqadgkkivdpskqnglssRLWMELLQPLRVTvvsrgpdtellvanpvelsgkgrplvFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDegdglsvprnkIEEGVWKLLMGWE
Flexible Loop (DISEMBL)
mdlffvtdtrellhtrkrkedtyeHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSygrfsrrqrgnCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVAnpvelsgkgrpLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLdegdglsvprnkieegVWKLLMGWE
Low Complexity Region (SEG)
MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Disordered region (IsUnstruct)
***FFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVD****NGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGW*
Disordered Region (DISOPRED)
MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGT**************AIIDML*****************VSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL*****************LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGW*
Disordered Region (DISEMBL)
MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Disordered Region (DISPRO)
MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDM**********CSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.321	0.090	0.333	4e-05
B9JZI2	941	[Protein-PII] uridylyltra	yes	no	0.295	0.081	0.35	0.0007

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 48.5 bits (114), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 84  VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ 143
           V IDN+ S  HT++++  +D  GLLYD+ R L +  +Q+S  + S    G   ID+F ++
Sbjct: 847 VLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKIS--TYGEKAIDVFYVK 904

Query: 144 -ADGKKIVDPSKQNGLSSRLWMELLQP 169
              G K+   +K   +  RL   L  P
Sbjct: 905 DVFGLKVTHENKLAQIRERLLHALADP 931

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Azospirillum brasilense (taxid: 192)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|B9JZI2|GLND_AGRVS [Protein-PII] uridylyltransferase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=glnD PE=3 SV=1

 Score = 44.7 bits (104), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 84  VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 142
           VTI NSLS   T+++I C D  GLL ++   L D ++ +   R +    G   ID F ++
Sbjct: 828 VTISNSLSNKFTVIEIECLDRIGLLAEVTAVLADLSLDIHSARIT--TFGEKVIDTFYVI 885

Query: 143 QADGKKIVDPSKQNGLSSRL 162
              G+KI + ++Q  +S RL
Sbjct: 886 DLVGQKITNENRQGSISVRL 905

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Agrobacterium vitis (strain S4 / ATCC BAA-846) (taxid: 311402)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
356533259	411	PREDICTED: uncharacterized protein LOC10	1.0	0.635	0.770	1e-117
356572480	412	PREDICTED: uncharacterized protein LOC10	1.0	0.633	0.774	1e-117
225441177	411	PREDICTED: uncharacterized protein LOC10	1.0	0.635	0.775	1e-115
356548347	412	PREDICTED: uncharacterized protein LOC10	1.0	0.633	0.759	1e-114
147817636	465	hypothetical protein VITISV_004035 [Viti	1.0	0.561	0.741	1e-112
224117840	412	predicted protein [Populus trichocarpa]	0.996	0.631	0.778	1e-112
255556900	409	amino acid binding protein, putative [Ri	0.984	0.628	0.782	1e-111
224056635	413	predicted protein [Populus trichocarpa]	0.996	0.629	0.763	1e-108
224105273	411	predicted protein [Populus trichocarpa]	0.992	0.630	0.755	1e-107
357510825	405	hypothetical protein MTR_7g102330 [Medic	0.977	0.629	0.731	1e-106

>gi|356533259|ref|XP_003535183.1| PREDICTED: uncharacterized protein LOC100789465 [Glycine max]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 201/261 (77%), Positives = 233/261 (89%)

Query: 1   MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAI 60
           MDLFF+TDTRELLHT+KRK++T EHL  I+G+A+IS D+E+VG EITACS+A  FLP+AI
Sbjct: 151 MDLFFITDTRELLHTKKRKDETIEHLTEIMGDAIISIDIELVGPEITACSKAPPFLPTAI 210

Query: 61  IDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNI 120
            D+  L++P     G+L    VS+T+DN LSP HTLVQI+CQDHKGLLYDIMRTLKDYNI
Sbjct: 211 TDIFDLELPDLARGGTLRSDYVSITMDNLLSPAHTLVQIMCQDHKGLLYDIMRTLKDYNI 270

Query: 121 QVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPD 180
           Q+SYGRF+ + RG CEIDLFIMQADGKKIVDP+KQN LSSRL MELL+PLRV +VSRGPD
Sbjct: 271 QISYGRFTTKPRGKCEIDLFIMQADGKKIVDPNKQNSLSSRLRMELLRPLRVAIVSRGPD 330

Query: 181 TELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGD 240
           TELLV+NPVELSGKGRPLVF+DITLALKMLD CIFSA+IGRH+IGDREWEVYR+LLDEG+
Sbjct: 331 TELLVSNPVELSGKGRPLVFYDITLALKMLDTCIFSAKIGRHLIGDREWEVYRILLDEGE 390

Query: 241 GLSVPRNKIEEGVWKLLMGWE 261
           GLSVPRNK+EEGVWK+LMGWE
Sbjct: 391 GLSVPRNKVEEGVWKMLMGWE 411

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572480|ref|XP_003554396.1| PREDICTED: uncharacterized protein LOC100818216 [Glycine max]

 Score =  426 bits (1095), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/262 (77%), Positives = 234/262 (89%), Gaps = 1/262 (0%)

Query: 1   MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAI 60
           +DLFF+TDTRELLHT+KR++DT E L  ILG+ +I+ D+E+VG EI ACSQASSFLPSA+
Sbjct: 151 VDLFFITDTRELLHTKKRRDDTIEQLSAILGDPLITIDIELVGPEIAACSQASSFLPSAM 210

Query: 61  I-DMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYN 119
             DM  L++P  + SG+ T  +VS+T+DNSLSP HTLVQI+CQDHKGLLYDIMRTLKDYN
Sbjct: 211 TEDMFDLELPGSIQSGTSTSDSVSITMDNSLSPAHTLVQIICQDHKGLLYDIMRTLKDYN 270

Query: 120 IQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGP 179
           IQ+SYGRFS + RG CE+DLFIMQADGKKIV+PSKQ  LSSRL MELL+PLRVTVVSRGP
Sbjct: 271 IQISYGRFSTKPRGKCELDLFIMQADGKKIVNPSKQKSLSSRLRMELLRPLRVTVVSRGP 330

Query: 180 DTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 239
           DTELLVANPVELSGKGRPLVF+DIT ALKML  CIFSAE+GRH++GDREWEVYR+LLDEG
Sbjct: 331 DTELLVANPVELSGKGRPLVFYDITHALKMLGPCIFSAEVGRHVVGDREWEVYRILLDEG 390

Query: 240 DGLSVPRNKIEEGVWKLLMGWE 261
           DGLSVPRNKIE+GVWK+LMGWE
Sbjct: 391 DGLSVPRNKIEKGVWKMLMGWE 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441177|ref|XP_002268949.1| PREDICTED: uncharacterized protein LOC100265834 [Vitis vinifera] gi|297739971|emb|CBI30153.3| unnamed protein product [Vitis vinifera]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 204/263 (77%), Positives = 229/263 (87%), Gaps = 2/263 (0%)

Query: 1   MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAI 60
           MDLFF+TDTRELLHT+KR+EDT+ HLKT+LG+AMISCD+ MVG+EITACSQ S+ LPSAI
Sbjct: 149 MDLFFITDTRELLHTKKRQEDTHNHLKTVLGDAMISCDISMVGSEITACSQTSTLLPSAI 208

Query: 61  I-DMLHLDMPVELPSGSLTCS-NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDY 118
             ++       E PSG    S N+SVT+DNSLSP HTLVQIVCQDHKGLLYD+MRTLKDY
Sbjct: 209 TREIFGSKFEDEPPSGLPQVSGNISVTMDNSLSPAHTLVQIVCQDHKGLLYDMMRTLKDY 268

Query: 119 NIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRG 178
           NI++SYGR + + R NCE+DLFIMQADGKK+VDP KQN L SRL MELL+PLRV VVSRG
Sbjct: 269 NIKISYGRLTTKPRRNCEVDLFIMQADGKKVVDPYKQNALCSRLQMELLRPLRVAVVSRG 328

Query: 179 PDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDE 238
           PDTELLVANPVELSGKGRPLVF DIT ALKML++CIFSAEIGR MI DREWEVYR+LLDE
Sbjct: 329 PDTELLVANPVELSGKGRPLVFFDITHALKMLNVCIFSAEIGRQMIADREWEVYRILLDE 388

Query: 239 GDGLSVPRNKIEEGVWKLLMGWE 261
           GDGL VPRNKIEEGVWK+LMGWE
Sbjct: 389 GDGLLVPRNKIEEGVWKMLMGWE 411

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548347|ref|XP_003542564.1| PREDICTED: uncharacterized protein LOC100816138 [Glycine max]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/262 (75%), Positives = 232/262 (88%), Gaps = 1/262 (0%)

Query: 1   MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAI 60
           +DLFF+TDTRELLHT+KRK++T E+L  I+G+A+IS D+E+VG EITACSQA  FLP+AI
Sbjct: 151 IDLFFITDTRELLHTKKRKDETIEYLTEIMGDAIISIDIELVGPEITACSQAPPFLPTAI 210

Query: 61  I-DMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYN 119
             D+  L++P     G+L    VS+T+DN LSP HTLVQI+CQDHKGLLYDIMRTLKDYN
Sbjct: 211 TEDVFDLELPDLARGGTLRSDYVSITMDNLLSPAHTLVQIMCQDHKGLLYDIMRTLKDYN 270

Query: 120 IQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGP 179
           IQ+SYGRF+ + RG CEIDLFIMQADGKKIVDP+KQN LSSRL MELL+PLRV +VSRGP
Sbjct: 271 IQISYGRFTAKPRGKCEIDLFIMQADGKKIVDPNKQNSLSSRLRMELLRPLRVAIVSRGP 330

Query: 180 DTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 239
           DTELLV+NPVELSGKGRPLVF+DITLALKMLD CIF A+IGRH+IGDREWEVYR+LLDEG
Sbjct: 331 DTELLVSNPVELSGKGRPLVFYDITLALKMLDTCIFLAKIGRHLIGDREWEVYRILLDEG 390

Query: 240 DGLSVPRNKIEEGVWKLLMGWE 261
           +GLSVPRNK+EEGVWK+LMGWE
Sbjct: 391 EGLSVPRNKVEEGVWKMLMGWE 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817636|emb|CAN64495.1| hypothetical protein VITISV_004035 [Vitis vinifera]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/275 (74%), Positives = 229/275 (83%), Gaps = 14/275 (5%)

Query: 1   MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAI 60
           MDLFF+TDTRELLHT+KR+EDT+ HLKT+LG+AMISCD+ MVG+EITACSQ S+ LPSAI
Sbjct: 191 MDLFFITDTRELLHTKKRQEDTHNHLKTVLGDAMISCDISMVGSEITACSQTSTLLPSAI 250

Query: 61  I-DMLHLDMPVELPSGSLTCS-NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDY 118
             ++       E PSG    S N+SVT+DNSLSP HTLVQIVCQDHKGLLYD+MRTLKDY
Sbjct: 251 TREIFGSKFEDEPPSGLPQVSGNISVTMDNSLSPAHTLVQIVCQDHKGLLYDMMRTLKDY 310

Query: 119 NIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRG 178
           NI++SYGR + + R NCE+DLFIMQADGKK+VDP KQN L SRL MELL+PLRV VVSRG
Sbjct: 311 NIKISYGRLTTKPRRNCEVDLFIMQADGKKVVDPYKQNALCSRLQMELLRPLRVAVVSRG 370

Query: 179 PDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFS------------AEIGRHMIGD 226
           PDTELLVANPVELSGKGRPLVF DIT ALKML++CIFS            AEIGR MI D
Sbjct: 371 PDTELLVANPVELSGKGRPLVFFDITHALKMLNVCIFSVLLYAPIIRVRWAEIGRQMIAD 430

Query: 227 REWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMGWE 261
           REWEVYR+LLDEGDGL VPRNKIEEGVWK+LMGWE
Sbjct: 431 REWEVYRILLDEGDGLLVPRNKIEEGVWKMLMGWE 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117840|ref|XP_002317681.1| predicted protein [Populus trichocarpa] gi|222860746|gb|EEE98293.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/262 (77%), Positives = 227/262 (86%), Gaps = 2/262 (0%)

Query: 1   MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAI 60
           MDLFFVTDTRELLHT KRKEDTY+HL+ ++GN+MISCD+EMVG EITACS  SSFLP+AI
Sbjct: 151 MDLFFVTDTRELLHTNKRKEDTYDHLRAVMGNSMISCDIEMVGPEITACSAESSFLPTAI 210

Query: 61  ID-MLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYN 119
            + +L L MP ELPS   + S   + +DN LSP HTLVQIVCQDHKGLLYDIMRTLKDYN
Sbjct: 211 TENILPLQMPDELPSSLTSTSVSVI-MDNLLSPAHTLVQIVCQDHKGLLYDIMRTLKDYN 269

Query: 120 IQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGP 179
           IQ+SYGRF  + R  CEIDLFIMQADGKKIVDP+KQ  LSSRL MEL++PLRV VVSRGP
Sbjct: 270 IQISYGRFYIKHRRTCEIDLFIMQADGKKIVDPNKQKALSSRLEMELVRPLRVAVVSRGP 329

Query: 180 DTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 239
           DTEL+VANPVELSGKGRPLVFHDITLAL ML+ CIFSAEI R MIGDRE+EVYRVLLDEG
Sbjct: 330 DTELMVANPVELSGKGRPLVFHDITLALTMLNSCIFSAEIRRRMIGDREFEVYRVLLDEG 389

Query: 240 DGLSVPRNKIEEGVWKLLMGWE 261
           +GL+VPR KIEE VWK+LMGWE
Sbjct: 390 EGLAVPRRKIEEQVWKMLMGWE 411

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556900|ref|XP_002519483.1| amino acid binding protein, putative [Ricinus communis] gi|223541346|gb|EEF42897.1| amino acid binding protein, putative [Ricinus communis]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/262 (78%), Positives = 226/262 (86%), Gaps = 5/262 (1%)

Query: 1   MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAI 60
           MDLFFVTDTRELLHT KRKE+TY  LK+++G+ MISCD+EMVG EITACS  SS LP+ I
Sbjct: 152 MDLFFVTDTRELLHTNKRKEETYGQLKSVIGDGMISCDIEMVGPEITACSLESSSLPTTI 211

Query: 61  I-DMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYN 119
             DMLH     E+P GSLT  +VSVT+DNSLSPGHTLVQI CQDHKGLLYDIMRTLKDYN
Sbjct: 212 TEDMLHW----EVPPGSLTSISVSVTMDNSLSPGHTLVQIACQDHKGLLYDIMRTLKDYN 267

Query: 120 IQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGP 179
           I++SYGRFS +QR NCEIDLFI+QADGKKIVDPSKQ  L SRL MELL+PLRV VVSRGP
Sbjct: 268 IKISYGRFSIKQRRNCEIDLFIVQADGKKIVDPSKQGALCSRLEMELLRPLRVAVVSRGP 327

Query: 180 DTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 239
           D ELLVANPVELSG GRPLVFHDITLALKML   IFSAEI R MIGDRE+EVYRVLLDEG
Sbjct: 328 DIELLVANPVELSGNGRPLVFHDITLALKMLSTGIFSAEIRRCMIGDREYEVYRVLLDEG 387

Query: 240 DGLSVPRNKIEEGVWKLLMGWE 261
           +GLSVPR+KI+E VW +LMGW+
Sbjct: 388 EGLSVPRSKIQERVWNMLMGWD 409

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224056635|ref|XP_002298947.1| predicted protein [Populus trichocarpa] gi|222846205|gb|EEE83752.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/262 (76%), Positives = 228/262 (87%), Gaps = 2/262 (0%)

Query: 1   MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAI 60
           +DLFF+TD RELLHT KRKEDT +HLK + GN+MISCD+E+VG EITACS  SSFLP+AI
Sbjct: 152 IDLFFITDNRELLHTNKRKEDTCDHLKAVTGNSMISCDIEIVGPEITACSAESSFLPTAI 211

Query: 61  ID-MLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYN 119
            + +L L+MP ELPS   + ++VSV +DNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYN
Sbjct: 212 TENILPLEMPDELPSSLTS-TSVSVNMDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYN 270

Query: 120 IQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGP 179
           IQ+SYGRFS      C+IDLF++Q DGKKIVDP KQ  LSSRL MEL++PLRV  VSRGP
Sbjct: 271 IQISYGRFSMNHGRACDIDLFLVQTDGKKIVDPRKQKALSSRLEMELVRPLRVATVSRGP 330

Query: 180 DTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 239
           DTELLVANPVELSGKGRPLVFHDITLALKML+ CIFSAEI R MIGDRE+EVYRVLLDEG
Sbjct: 331 DTELLVANPVELSGKGRPLVFHDITLALKMLNTCIFSAEIRRRMIGDREFEVYRVLLDEG 390

Query: 240 DGLSVPRNKIEEGVWKLLMGWE 261
           +GL+VPR+KIE+ VWK+LMGWE
Sbjct: 391 EGLAVPRSKIEKQVWKMLMGWE 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105273|ref|XP_002333837.1| predicted protein [Populus trichocarpa] gi|222838705|gb|EEE77070.1| predicted protein [Populus trichocarpa]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/262 (75%), Positives = 222/262 (84%), Gaps = 3/262 (1%)

Query: 1   MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAI 60
           MDLFFVTDT   +   KRKEDTY+HL+ ++GN+MISCD+EMVG EITACS  SSFLP+AI
Sbjct: 151 MDLFFVTDTSSCI-XNKRKEDTYDHLRAVMGNSMISCDIEMVGPEITACSAESSFLPTAI 209

Query: 61  ID-MLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYN 119
            + +L L MP ELPS   + S   + +DN LSP HTLVQIVCQDHKGLLYDIMRTLKDYN
Sbjct: 210 TENILPLQMPDELPSSLTSTSVSVI-MDNLLSPAHTLVQIVCQDHKGLLYDIMRTLKDYN 268

Query: 120 IQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGP 179
           IQ+SYGRF  + R  CEIDLFIMQADGKKIVDP+KQ  LSSRL MEL++PLRV VVSRGP
Sbjct: 269 IQISYGRFYIKHRRTCEIDLFIMQADGKKIVDPNKQKALSSRLEMELVRPLRVAVVSRGP 328

Query: 180 DTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 239
           DTEL+VANPVELSGKGRPLVFHDITLAL ML+ CIFSAEI R MIGDRE+EVYRVLLDEG
Sbjct: 329 DTELMVANPVELSGKGRPLVFHDITLALTMLNSCIFSAEIRRRMIGDREFEVYRVLLDEG 388

Query: 240 DGLSVPRNKIEEGVWKLLMGWE 261
           +GL+VPR KIEE VWK+LMGWE
Sbjct: 389 EGLAVPRRKIEEQVWKMLMGWE 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357510825|ref|XP_003625701.1| hypothetical protein MTR_7g102330 [Medicago truncatula] gi|355500716|gb|AES81919.1| hypothetical protein MTR_7g102330 [Medicago truncatula]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 191/261 (73%), Positives = 221/261 (84%), Gaps = 6/261 (2%)

Query: 1   MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAI 60
           +DLFF+TDTRELLHT KRK+DT E L T+L +   + D+E+VG E TA SQ SS LP+AI
Sbjct: 151 LDLFFITDTRELLHTEKRKDDTIEKLTTVLEDFFTTIDIELVGPETTAFSQPSSSLPNAI 210

Query: 61  IDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNI 120
            D+       +L SG+ T  +VS+ +DN+LSP HTLVQI+CQDHKGLLYDIMRTLKD+NI
Sbjct: 211 TDVF------DLQSGTSTSDSVSIVMDNTLSPAHTLVQIMCQDHKGLLYDIMRTLKDFNI 264

Query: 121 QVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPD 180
           Q+SYGRFS++ RG CEIDLFIMQ DGKKIVDPSK+  LSSRL  ELL+PLRV VVSRGPD
Sbjct: 265 QISYGRFSKKPRGKCEIDLFIMQVDGKKIVDPSKKESLSSRLKTELLRPLRVAVVSRGPD 324

Query: 181 TELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGD 240
           T+LLVANPVELSGKGRPLVF+DITLALKML +CIFSAE+GRH+IGDRE EVYRVLLDEG+
Sbjct: 325 TQLLVANPVELSGKGRPLVFYDITLALKMLGLCIFSAEVGRHVIGDRECEVYRVLLDEGE 384

Query: 241 GLSVPRNKIEEGVWKLLMGWE 261
           GLS PRNKIE+GVWK LMGWE
Sbjct: 385 GLSFPRNKIEKGVWKKLMGWE 405

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2057936	410	ACR10 "ACT domain repeats 10"	0.984	0.626	0.655	2e-88
TAIR|locus:2039782	411	ACR9 "ACT domain repeats 9" [A	0.980	0.622	0.516	7.4e-66
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.647	0.371	0.255	0.00016
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.509	0.307	0.272	0.00025

TAIR|locus:2057936 ACR10 "ACT domain repeats 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 171/261 (65%), Positives = 206/261 (78%)

Query:     1 MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAI 60
             MDLFFVTDTRELL T KR+ + YE+L+  +G++MIS D+E+VG EITACS +SS   +  
Sbjct:   154 MDLFFVTDTRELLGTVKRRNEVYEYLRDAIGDSMISYDIELVGPEITACSTSSSVAET-- 211

Query:    61 IDMLHLDMPVELPSGSLTCSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNI 120
               +   D+  E  SG  T SNVS+ +DNSLS  HTL+ I CQDHKGLLYDIMRT KD+NI
Sbjct:   212 --LFSSDVSGEHSSGLHTSSNVSIAVDNSLSSAHTLIHITCQDHKGLLYDIMRTFKDFNI 269

Query:   121 QVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPD 180
             Q+SYGRF+ +   NCEIDLFI+Q+DG+KI+D SK N L +RL  EL QPLRV +++RGPD
Sbjct:   270 QISYGRFTIKLGKNCEIDLFIVQSDGRKILDSSKLNALITRLRAELQQPLRVVMMNRGPD 329

Query:   181 TELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGD 240
             TELLV NPVELSGKGRP VFHDI LALK +D CIFSAEIGRH+ GDREWEVY+VL++E D
Sbjct:   330 TELLVTNPVELSGKGRPQVFHDIALALKKIDTCIFSAEIGRHVTGDREWEVYKVLINEED 389

Query:   241 GLSVPRNKIEEGVWKLLMGWE 261
              L +PR+KIEE VWK LMGWE
Sbjct:   390 SLPIPRSKIEEEVWKTLMGWE 410

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2039782 ACR9 "ACT domain repeats 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 137/265 (51%), Positives = 183/265 (69%)

Query:     1 MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAI 60
             +D+FF+TD  +LLHT++R+  T +HL  +LG   +SC++E+ G E+ +  + SS  P A 
Sbjct:   151 LDMFFITDAMDLLHTKQRQTKTCDHLTAVLGEHGVSCELELAGPELESVQRFSSLPPLAA 210

Query:    61 IDMLHLDMPVELPSGSLTCSNVSV-TIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYN 119
              ++   D   ++ SGS   SN +V T+DN LSP HTL+QI C D KGL YDI+RT KD +
Sbjct:   211 DELFGPD-GFDI-SGS--SSNKAVLTVDNQLSPAHTLLQIRCVDQKGLFYDILRTSKDCD 266

Query:   120 IQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGP 179
             + ++YGRFS + +G   ++LF+   DG KI+DP  Q    +RL  E++ PLRV +V+RGP
Sbjct:   267 VHIAYGRFSSKVKGYRNLELFVRGTDGNKIMDPKHQANFCARLKEEMVCPLRVIIVNRGP 326

Query:   180 DTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG 239
             DTELLVANPVELSGKGRP VF+D+TLALK L ICIFSAEIGRH   DR+WEVYR LLDE 
Sbjct:   327 DTELLVANPVELSGKGRPRVFYDVTLALKSLGICIFSAEIGRHSTLDRQWEVYRFLLDES 386

Query:   240 DGLSVP----RNKIEEGVWKLLMGW 260
                 +     RN++ + V K LMGW
Sbjct:   387 REFPLASLRARNQVVDRVTKTLMGW 411

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00016, P = 0.00016
 Identities = 46/180 (25%), Positives = 82/180 (45%)

Query:    84 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 142
             V IDN      T++++   +  G+L ++++ L D N+ ++    S    G   +D+F + 
Sbjct:    27 VVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYIS--SDGGWFMDVFNVT 84

Query:   143 QADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGPDTELLVANPVELSGKGRPLVFHD 202
               DG K+ D    + +   L  E      +  V   P T+  V   +EL+G  RP +  +
Sbjct:    85 DQDGNKVTDEVVLDYIQKSLGPEACFSTSMRSVGVIPSTDSTV---IELTGCDRPGLLSE 141

Query:   203 ITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLD-EGDGLSVPR--NKIEEGVWKLLMG 259
             ++  L  L   + +AEI  H    R   V +V  D  G G+S P   ++I+  +  +L G
Sbjct:   142 LSAVLTHLKCSVLNAEIWTH--NTRAAAVMQVTDDLTGCGISDPERLSRIKNLLRNVLKG 199

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00025, P = 0.00025
 Identities = 39/143 (27%), Positives = 67/143 (46%)

Query:    84 VTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF-IM 142
             V IDN+ S   T++Q+   +  G L ++++ L D N+ +     S    G   +D+F ++
Sbjct:    18 VVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYIS--SDGGWFMDVFKVI 75

Query:   143 QADGKKIVDPSKQNGLSSRLWME---LLQPLRVTVVSRGPDTELLVANPVELSGKGRPLV 199
               DG KI D    + +  R+       + PLR +V    P  E      +EL+G  RP +
Sbjct:    76 DQDGNKIRDTQVLDYIQKRIESNAGWFIPPLRSSVGVM-PTDEY---TSIELAGTDRPGL 131

Query:   200 FHDITLALKMLDICIFSAEIGRH 222
               +++  L  L   + +AEI  H
Sbjct:   132 LSEVSAVLTDLHCNVVNAEIWTH 154


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      261       261   0.00090  114 3  11 22  0.44    33
                                                     32  0.49    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  608 (65 KB)
  Total size of DFA:  207 KB (2116 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  22.33u 0.13s 22.46t   Elapsed:  00:00:00
  Total cpu time:  22.33u 0.13s 22.46t   Elapsed:  00:00:01
  Start:  Sat May 11 04:56:56 2013   End:  Sat May 11 04:56:57 2013

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00000615001 SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (411 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	261
cd04896	75	cd04896, ACT_ACR-like_3, ACT domain-containing pro	1e-39
cd04898	77	cd04898, ACT_ACR-like_4, ACT domain-containing pro	8e-39
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	6e-11
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	4e-09
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	3e-08
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	1e-07
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	1e-05
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	0.001

>gnl|CDD|153168 cd04896, ACT_ACR-like_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  132 bits (333), Expect = 1e-39
 Identities = 47/75 (62%), Positives = 59/75 (78%)

Query: 95  TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSK 154
           TL+QI C D KGLLYDI+RT KD NIQ+SYGRFS + +G  E+DLFI+Q+DGKKI+DP K
Sbjct: 1   TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKK 60

Query: 155 QNGLSSRLWMELLQP 169
           Q  L +RL  E++ P
Sbjct: 61  QAALCARLREEMVCP 75

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153170 cd04898, ACT_ACR-like_4, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  130 bits (327), Expect = 8e-39
 Identities = 54/77 (70%), Positives = 59/77 (76%), Gaps = 3/77 (3%)

Query: 187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL---S 243
           NPVELSGKGRP VF+DITLALK L ICIFSAEIGRH  GDR+WEVYRVLL E D L    
Sbjct: 1   NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGG 60

Query: 244 VPRNKIEEGVWKLLMGW 260
             R+K+ + V K LMGW
Sbjct: 61  RQRSKVVDRVTKTLMGW 77

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 77

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 56.7 bits (137), Expect = 6e-11
 Identities = 22/35 (62%), Positives = 33/35 (94%)

Query: 1  MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMI 35
          +DLFF+TD RELLHT+KR+E+TY++L+ +LG++MI
Sbjct: 42 LDLFFITDARELLHTKKRREETYDYLRAVLGDSMI 76

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 51.8 bits (125), Expect = 4e-09
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 95  TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSK 154
           T+V++   D  GLL DI R L D  + +   R S    G   +D+F +     + +DP +
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARIST--TGERALDVFYVTDSDGRPLDPER 58

Query: 155 QNGLSSRLWMEL 166
              L   L   L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 49.1 bits (118), Expect = 3e-08
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 189 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPR-N 247
           VE+    RP +  DIT  L  L + I  A I     G+R  +V+ V   +G  L   R  
Sbjct: 3   VEVYAPDRPGLLADITRVLADLGLNIHDARISTT--GERALDVFYVTDSDGRPLDPERIA 60

Query: 248 KIEEGVWKLL 257
           ++EE +   L
Sbjct: 61  RLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 19/89 (21%)

Query: 83  SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVS------YGRFSRRQRGNCE 136
            VTIDN  S   T++++  +D  GLLYD+ R L D N+ ++      YG          E
Sbjct: 832 RVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYG----------E 881

Query: 137 --IDLFIMQ-ADGKKIVDPSKQNGLSSRL 162
             +D+F +    G KI + ++Q  +   L
Sbjct: 882 RAVDVFYVTDLFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 83  SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 142
            VTI  + S   T++++   D  GLL  +     D  + +   + +    G    D+FI+
Sbjct: 780 RVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKIT--TFGERVEDVFIV 837

Query: 143 Q-ADGKKIVDPSKQNGLSSRL 162
             ADG+ +    +Q+ L   L
Sbjct: 838 TDADGQALNAELRQSLLQRLL 858

Length = 867

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 39.3 bits (92), Expect = 0.001
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)

Query: 83  SVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM 142
            VTI N+ S   T++++   D  GLL  + RTL++  + +   + +    G    D+F +
Sbjct: 768 RVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT--TFGEKAEDVFYV 825

Query: 143 Q-ADGKKIVDPSKQN 156
               G K+ D  +Q 
Sbjct: 826 TDLFGLKLTDEEEQR 840

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
PRK01759	854	glnD PII uridylyl-transferase; Provisional	100.0
PRK05007	884	PII uridylyl-transferase; Provisional	100.0
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.97
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.97
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.97
PRK04374	869	PII uridylyl-transferase; Provisional	99.97
PRK05092	931	PII uridylyl-transferase; Provisional	99.96
PRK03059	856	PII uridylyl-transferase; Provisional	99.96
PRK03381	774	PII uridylyl-transferase; Provisional	99.95
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.86
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.86
PRK01759	854	glnD PII uridylyl-transferase; Provisional	99.85
PRK05007	884	PII uridylyl-transferase; Provisional	99.85
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.84
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.83
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.82
PRK04374	869	PII uridylyl-transferase; Provisional	99.81
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.81
PRK03059	856	PII uridylyl-transferase; Provisional	99.8
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.8
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.79
PRK05092	931	PII uridylyl-transferase; Provisional	99.77
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.75
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.75
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.74
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.72
PRK03381	774	PII uridylyl-transferase; Provisional	99.71
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.62
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.59
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.58
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.57
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.53
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.5
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	99.46
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.42
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.39
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.23
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	99.12
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.12
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	98.96
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	98.89
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.82
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.6
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.5
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.28
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.19
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.16
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.13
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.06
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	98.01
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.98
COG4747	142	ACT domain-containing protein [General function pr	97.95
PRK00194	90	hypothetical protein; Validated	97.91
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	97.89
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.87
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.86
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	97.84
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.83
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.77
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.69
PRK00194	90	hypothetical protein; Validated	97.63
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	97.61
PRK00227	693	glnD PII uridylyl-transferase; Provisional	97.53
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	97.46
COG3830	90	ACT domain-containing protein [Signal transduction	97.42
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.41
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.37
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	97.3
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.2
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	97.2
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	97.19
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	97.19
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	97.19
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.19
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.18
PRK08577	136	hypothetical protein; Provisional	97.16
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.14
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.14
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	97.13
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	97.12
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.1
COG3830	90	ACT domain-containing protein [Signal transduction	97.1
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	97.07
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	97.05
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.03
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	97.03
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.97
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.96
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	96.94
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	96.9
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.9
PRK11899	279	prephenate dehydratase; Provisional	96.84
PRK11589	190	gcvR glycine cleavage system transcriptional repre	96.81
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.81
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.8
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.78
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.77
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	96.76
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.74
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	96.72
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	96.67
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.64
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.61
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.6
PRK04435	147	hypothetical protein; Provisional	96.57
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	96.56
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.55
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	96.53
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	96.5
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.49
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.46
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.41
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	96.4
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.39
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	96.38
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.37
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.37
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.35
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.35
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	96.13
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.11
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	96.05
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	96.04
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	96.02
cd02116	60	ACT ACT domains are commonly involved in specifica	96.0
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	95.99
PRK07334	403	threonine dehydratase; Provisional	95.94
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	95.88
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	95.79
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	95.7
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	95.6
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	95.59
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	95.53
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	95.46
PRK08577	136	hypothetical protein; Provisional	95.41
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	95.37
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	95.24
PRK06635	404	aspartate kinase; Reviewed	95.21
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	95.16
PRK07334	403	threonine dehydratase; Provisional	95.15
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	95.12
COG4747	142	ACT domain-containing protein [General function pr	95.09
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	95.03
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	95.03
cd02116	60	ACT ACT domains are commonly involved in specifica	95.02
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	94.94
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	94.92
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	94.84
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	94.78
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.77
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	94.77
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	94.73
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	94.47
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	94.42
PRK04435	147	hypothetical protein; Provisional	94.36
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	94.31
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	94.25
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	93.94
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	93.91
PLN02317	382	arogenate dehydratase	93.68
PRK11899	279	prephenate dehydratase; Provisional	93.63
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	93.51
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	93.5
PRK08210	403	aspartate kinase I; Reviewed	93.25
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	93.11
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	93.09
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	92.99
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	92.86
PRK11898	283	prephenate dehydratase; Provisional	92.72
PLN02551	521	aspartokinase	92.72
PRK06291	465	aspartate kinase; Provisional	92.7
COG1707	218	ACT domain-containing protein [General function pr	92.53
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.51
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	92.51
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	92.18
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	91.79
TIGR01268	436	Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetra	91.68
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	91.53
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	91.45
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.36
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	91.13
PRK06382	406	threonine dehydratase; Provisional	90.87
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	90.37
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	89.89
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	89.7
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	89.51
PRK07431	587	aspartate kinase; Provisional	89.26
PRK09034	454	aspartate kinase; Reviewed	89.2
PRK09181	475	aspartate kinase; Validated	88.94
PRK06545	359	prephenate dehydrogenase; Validated	88.79
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	88.69
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	88.36
PRK09084	448	aspartate kinase III; Validated	87.9
PRK08818	370	prephenate dehydrogenase; Provisional	87.88
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	87.81
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	87.69
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	87.12
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	86.94
PRK08198	404	threonine dehydratase; Provisional	86.82
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	86.43
PRK07431	587	aspartate kinase; Provisional	86.13
PRK08818	370	prephenate dehydrogenase; Provisional	85.39
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	84.66
TIGR01270	464	Trp_5_monoox tryptophan 5-monooxygenase, tetrameri	84.09
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	83.99
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	83.57
COG1707	218	ACT domain-containing protein [General function pr	83.48
PRK08198	404	threonine dehydratase; Provisional	82.88
COG2150	167	Predicted regulator of amino acid metabolism, cont	82.45
COG2150	167	Predicted regulator of amino acid metabolism, cont	82.42
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	81.89
PRK06349	426	homoserine dehydrogenase; Provisional	81.55
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	80.73

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=100.00  E-value=1.7e-33  Score=285.59  Aligned_cols=171  Identities=19%  Similarity=0.307  Sum_probs=146.9

Q ss_pred             CCceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHH
Q 024865           79 CSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNG  157 (261)
Q Consensus        79 ~~~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~  157 (261)
                      ..+|.|.++++++.++|+|+|+++||||||++|+++|+.+|+||++|+|+|+ .+++++|+|+|. .+|.++. +++++.
T Consensus       662 ~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~-~~g~alD~F~V~d~~g~~~~-~~~~~~  739 (854)
T PRK01759        662 RGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITS-QDGYVLDSFIVTELNGKLLE-FDRRRQ  739 (854)
T ss_pred             CCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEc-cCCEEEEEEEEeCCCCCCCC-HHHHHH
Confidence            4578888999999999999999999999999999999999999999999974 566999999998 8888885 678999


Q ss_pred             HHHHHHHhhcCCceeee---ec-C----CCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeee
Q 024865          158 LSSRLWMELLQPLRVTV---VS-R----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH  222 (261)
Q Consensus       158 l~~~L~~~L~~~~~~~~---~~-~----~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~  222 (261)
                      |+++|.++|.++.....   .+ +    ..+|+|.|+       |+|||.|.|||||||+|+++|.++|++|++|||+  
T Consensus       740 l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~--  817 (854)
T PRK01759        740 LEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKIT--  817 (854)
T ss_pred             HHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEc--
Confidence            99999999987643211   11 1    227888884       6999999999999999999999999999999999  


Q ss_pred             eccceeEEEEEEEEeCCCCCccch---HHHHHHHHH
Q 024865          223 MIGDREWEVYRVLLDEGDGLSVPR---NKIEEGVWK  255 (261)
Q Consensus       223 t~ger~~dv~~F~i~~~~g~~l~~---~~~~~~l~~  255 (261)
                      |.||||+|+  |||+|.+|+|++.   +++.++|.+
T Consensus       818 T~gerv~D~--Fyv~~~~g~~l~~~~~~~l~~~L~~  851 (854)
T PRK01759        818 TIGEKAEDF--FILTNQQGQALDEEERKALKSRLLS  851 (854)
T ss_pred             ccCceEEEE--EEEECCCCCcCChHHHHHHHHHHHH
Confidence            799999998  9999999999983   444444444

>PRK05007 PII uridylyl-transferase; Provisional

Probab=100.00  E-value=7.6e-33  Score=281.67  Aligned_cols=172  Identities=19%  Similarity=0.246  Sum_probs=146.3

Q ss_pred             CceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHH
Q 024865           80 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL  158 (261)
Q Consensus        80 ~~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l  158 (261)
                      .+|.|.++++++.++|+|+|+++||||||++|+++|+.+|+||++|+|+|+.+| +++|+|+|. .+|.++. ++++++|
T Consensus       687 ~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg-~alD~F~V~d~~g~~~~-~~~~~~I  764 (884)
T PRK05007        687 DKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDG-MAMDTFIVLEPDGSPLS-QDRHQVI  764 (884)
T ss_pred             CCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCC-eEEEEEEEECCCCCCCC-HHHHHHH
Confidence            568888999999999999999999999999999999999999999999986455 999999998 8888874 5789999


Q ss_pred             HHHHHHhhcCCceee-ee---cC-----CCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeee
Q 024865          159 SSRLWMELLQPLRVT-VV---SR-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH  222 (261)
Q Consensus       159 ~~~L~~~L~~~~~~~-~~---~~-----~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~  222 (261)
                      ++.|.++|.++.... ..   ++     ..+|+|.|+       |+|||.|.|||||||+|+++|.++|++|++|||+  
T Consensus       765 ~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~--  842 (884)
T PRK05007        765 RKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARIT--  842 (884)
T ss_pred             HHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEe--
Confidence            999999997663211 11   11     127888885       6999999999999999999999999999999999  


Q ss_pred             eccceeEEEEEEEEeCCCCCccc---hHHHHHHHHHHH
Q 024865          223 MIGDREWEVYRVLLDEGDGLSVP---RNKIEEGVWKLL  257 (261)
Q Consensus       223 t~ger~~dv~~F~i~~~~g~~l~---~~~~~~~l~~~l  257 (261)
                      |.||||+|+  |||++.+|.|++   ++.+.++|.+.|
T Consensus       843 T~gera~Dv--FyV~~~~g~~l~~~~~~~l~~~L~~~l  878 (884)
T PRK05007        843 TIGERVEDL--FILATADRRALNEELQQELRQRLTEAL  878 (884)
T ss_pred             ccCceEEEE--EEEEcCCCCcCCHHHHHHHHHHHHHHH
Confidence            799999998  999999999998   244555554443

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7e-30  Score=249.48  Aligned_cols=173  Identities=19%  Similarity=0.276  Sum_probs=144.6

Q ss_pred             CCceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHH
Q 024865           79 CSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNG  157 (261)
Q Consensus        79 ~~~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~  157 (261)
                      ...|.|.+...+..+.|+|+||++|+|.||+.+++.+...|+||++|+|+|+.+| +++|+|+|. ++|.++. +.+...
T Consensus       669 ~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG-~alDtfiv~~~~g~~~~-~dr~~~  746 (867)
T COG2844         669 LGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG-YALDTFIVLEPDGFPVE-EDRRAA  746 (867)
T ss_pred             ccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCC-ceeeeEEEecCCCCccc-hhHHHH
Confidence            3457788887777899999999999999999999999999999999999998777 999999998 8888877 678888


Q ss_pred             HHHHHHHhhcCCcee-ee---ecC-----CCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865          158 LSSRLWMELLQPLRV-TV---VSR-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR  221 (261)
Q Consensus       158 l~~~L~~~L~~~~~~-~~---~~~-----~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t  221 (261)
                      ++..|.+++..+... ..   .++     ..+|+|.|.       |+|||.|.||||||++|+.+|.+++++|++|||+ 
T Consensus       747 ~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkIt-  825 (867)
T COG2844         747 LRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKIT-  825 (867)
T ss_pred             HHHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeec-
Confidence            888888888644322 11   111     126888884       6999999999999999999999999999999999 


Q ss_pred             eeccceeEEEEEEEEeCCCCCccc---hHHHHHHHHHHH
Q 024865          222 HMIGDREWEVYRVLLDEGDGLSVP---RNKIEEGVWKLL  257 (261)
Q Consensus       222 ~t~ger~~dv~~F~i~~~~g~~l~---~~~~~~~l~~~l  257 (261)
                       |.||||||+  |||++.+|++++   ++.+.+++..-+
T Consensus       826 -T~GErveD~--F~vt~~~~~~l~~~~~q~l~~~ll~al  861 (867)
T COG2844         826 -TFGERVEDV--FIVTDADGQALNAELRQSLLQRLLEAL  861 (867)
T ss_pred             -cccccceeE--EEEeccccccCCHHHHHHHHHHHHHHh
Confidence             899999998  999999999998   334444444443

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.97  E-value=2.7e-29  Score=255.62  Aligned_cols=172  Identities=19%  Similarity=0.207  Sum_probs=146.3

Q ss_pred             ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865           81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS  159 (261)
Q Consensus        81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~  159 (261)
                      .|.|.+.+..+.++|+|+|+++||||||++|+++|+.+|+||++|+|+|+ .|++++|+|+|+ .+|.++.+++++++|+
T Consensus       655 ~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt-~~g~~lD~F~V~~~~g~~~~~~~~~~~i~  733 (850)
T TIGR01693       655 GPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTT-KDGVALDTFVVQDLFGSPPAAERVFQELL  733 (850)
T ss_pred             CCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEe-cCCEEEEEEEEECCCCCCCCcHHHHHHHH
Confidence            56788888777899999999999999999999999999999999999985 566999999998 8888888878899999


Q ss_pred             HHHHHhhcCCcee----ee---ec-----CCCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          160 SRLWMELLQPLRV----TV---VS-----RGPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       160 ~~L~~~L~~~~~~----~~---~~-----~~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      +.|.++|.+....    ..   .+     ...+|+|.|+       |+++|.|.|||||||+|+++|.++|++|++|||.
T Consensus       734 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~  813 (850)
T TIGR01693       734 QGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT  813 (850)
T ss_pred             HHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE
Confidence            9999999874321    11   01     1126888884       6999999999999999999999999999999999


Q ss_pred             eeeccceeEEEEEEEEeCCCCCccch---HHHHHHHHHHH
Q 024865          221 RHMIGDREWEVYRVLLDEGDGLSVPR---NKIEEGVWKLL  257 (261)
Q Consensus       221 t~t~ger~~dv~~F~i~~~~g~~l~~---~~~~~~l~~~l  257 (261)
                        |.|++++|+  |||++..|.|++.   +.+.++|.+.|
T Consensus       814 --t~~~~~~d~--F~v~~~~g~~~~~~~~~~l~~~L~~~l  849 (850)
T TIGR01693       814 --TFGEKAEDV--FYVTDLFGLKLTDEEEQRLLEVLAASV  849 (850)
T ss_pred             --ecCccceeE--EEEECCCCCCCCHHHHHHHHHHHHHHh
Confidence              688999997  9999999999983   44555555443

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.97  E-value=5.7e-29  Score=253.49  Aligned_cols=174  Identities=18%  Similarity=0.316  Sum_probs=144.1

Q ss_pred             ceEEEEEcCCC---CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCC-ChhhH
Q 024865           81 NVSVTIDNSLS---PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIV-DPSKQ  155 (261)
Q Consensus        81 ~~~V~i~~~~~---~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~-~~~~~  155 (261)
                      .|.|.+.+.+.   .++|+|+|+|+||||||++|+++|+.+|+||++|+|+|+.+| +++|+|+|. .+|.++. +++++
T Consensus       688 ~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg-~alD~F~V~d~~g~~~~~~~~r~  766 (895)
T PRK00275        688 GPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQ-FTLDTYIVLDDDGEPIGDNPARI  766 (895)
T ss_pred             CCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCC-eEEEEEEEeCCCCCCccchHHHH
Confidence            45566776665   589999999999999999999999999999999999986555 999999998 7888754 45799


Q ss_pred             HHHHHHHHHhhcCCceee--e---ec-----CCCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 024865          156 NGLSSRLWMELLQPLRVT--V---VS-----RGPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAE  218 (261)
Q Consensus       156 ~~l~~~L~~~L~~~~~~~--~---~~-----~~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~Ak  218 (261)
                      ++|++.|.++|.++....  .   .+     ...+|.|.|+       |.|+|+|.|||||||+|+.+|.++|+||++||
T Consensus       767 ~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~Ak  846 (895)
T PRK00275        767 EQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAK  846 (895)
T ss_pred             HHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeE
Confidence            999999999998765211  1   01     1125677664       68999999999999999999999999999999


Q ss_pred             EeeeeccceeEEEEEEEEeCCCCCccc----hHHHHHHHHHHHcc
Q 024865          219 IGRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMG  259 (261)
Q Consensus       219 I~t~t~ger~~dv~~F~i~~~~g~~l~----~~~~~~~l~~~l~~  259 (261)
                      |.  |.|++|+|+  |||++.+|.+++    .+.++++|.+.|.+
T Consensus       847 I~--T~g~~v~D~--F~V~d~~g~~l~~~~~~~~l~~~L~~~L~~  887 (895)
T PRK00275        847 IA--TLGERVEDV--FFITDADNQPLSDPQLCSRLQDAICEQLDA  887 (895)
T ss_pred             EE--ecCCEEEEE--EEEECCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            99  459999997  999999999997    25577777776643

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=1.2e-28  Score=250.05  Aligned_cols=169  Identities=17%  Similarity=0.227  Sum_probs=138.0

Q ss_pred             ceEEEE-EcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHH
Q 024865           81 NVSVTI-DNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL  158 (261)
Q Consensus        81 ~~~V~i-~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l  158 (261)
                      .+.|.+ ...+..+.|+|+|+|+||||||++||++|+.+|+||++|+|+|+.+| +++|+|+|. ++|.+   +++++++
T Consensus       676 ~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g-~~ld~f~V~~~~~~~---~~~~~~i  751 (869)
T PRK04374        676 QTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHD-AIFDVFEVLPQDTYA---DGDPQRL  751 (869)
T ss_pred             CCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCC-EEEEEEEEeCCCCCC---hHHHHHH
Confidence            344544 44677799999999999999999999999999999999999986556 999999998 66654   3578889


Q ss_pred             HHHHHHhhcCCceee---ee--cC-----CCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865          159 SSRLWMELLQPLRVT---VV--SR-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR  221 (261)
Q Consensus       159 ~~~L~~~L~~~~~~~---~~--~~-----~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t  221 (261)
                      ++.|.++|.++....   ..  ++     ..+|+|.|+       |+|+|+|.|||||||+|+.+|+++|++|++|||+ 
T Consensus       752 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~-  830 (869)
T PRK04374        752 AAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIA-  830 (869)
T ss_pred             HHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEE-
Confidence            999999998753211   10  11     126788874       6999999999999999999999999999999999 


Q ss_pred             eeccceeEEEEEEEEeCCCCCccc---hHHHHHHHHHHH
Q 024865          222 HMIGDREWEVYRVLLDEGDGLSVP---RNKIEEGVWKLL  257 (261)
Q Consensus       222 ~t~ger~~dv~~F~i~~~~g~~l~---~~~~~~~l~~~l  257 (261)
                       |.|++|+|+  |||++.+|.+++   ++++.++|.+.|
T Consensus       831 -T~g~~a~D~--F~V~d~~g~~~~~~~~~~l~~~L~~~l  866 (869)
T PRK04374        831 -TFGERAEDQ--FQITDEHDRPLSESARQALRDALCACL  866 (869)
T ss_pred             -ecCCEEEEE--EEEECCCCCcCChHHHHHHHHHHHHHh
Confidence             569999997  999999999987   345555555544

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=3.1e-27  Score=242.31  Aligned_cols=175  Identities=22%  Similarity=0.321  Sum_probs=148.6

Q ss_pred             CceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHH
Q 024865           80 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL  158 (261)
Q Consensus        80 ~~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l  158 (261)
                      .++.|.+.++++.++|+|+|+++||||||++|+++|+.+|+||++|+|+|+ .|++++|+|+|. .+|.+..++++++.|
T Consensus       718 ~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~-~dg~alD~F~V~~~~g~~~~~~~~~~~l  796 (931)
T PRK05092        718 RPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTT-TDGRALDTFWIQDAFGRDEDEPRRLARL  796 (931)
T ss_pred             CCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEe-cCCeEEEEEEEECCCCCCCCCHHHHHHH
Confidence            457788888888899999999999999999999999999999999999985 455999999998 778887778899999


Q ss_pred             HHHHHHhhcCCceee--e----ec----C--CCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865          159 SSRLWMELLQPLRVT--V----VS----R--GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEI  219 (261)
Q Consensus       159 ~~~L~~~L~~~~~~~--~----~~----~--~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI  219 (261)
                      ++.|.+++.+.....  .    .+    +  ..+|+|.|+       |.|+|+|.|||||||+|+++|.++|+||++|+|
T Consensus       797 ~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I  876 (931)
T PRK05092        797 AKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHI  876 (931)
T ss_pred             HHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEE
Confidence            999999996643210  0    01    1  126778774       589999999999999999999999999999999


Q ss_pred             eeeeccceeEEEEEEEEeCCCCCccc----hHHHHHHHHHHHcc
Q 024865          220 GRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMG  259 (261)
Q Consensus       220 ~t~t~ger~~dv~~F~i~~~~g~~l~----~~~~~~~l~~~l~~  259 (261)
                      .  |.|++++|+  |||++.+|.++.    .+.++++|.+.|.+
T Consensus       877 ~--T~~~~~~D~--F~v~d~~g~~i~~~~~~~~l~~~L~~~L~~  916 (931)
T PRK05092        877 A--TYGERAVDV--FYVTDLFGLKITNEARQAAIRRALLAALAE  916 (931)
T ss_pred             E--EcCCEEEEE--EEEeCCCCCcCCCHHHHHHHHHHHHHHhcC
Confidence            9  579999997  999999999997    25677787777754

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.96  E-value=2.1e-27  Score=241.06  Aligned_cols=171  Identities=16%  Similarity=0.164  Sum_probs=135.4

Q ss_pred             ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865           81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS  159 (261)
Q Consensus        81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~  159 (261)
                      .+.|.+.+++..+.|+|+|+|+||||||++|+++|+.+|+||++|+|+|+.+| +++|+|+|. ++|. ..+++++++|+
T Consensus       665 ~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g-~~ld~f~V~~~~~~-~~~~~~~~~i~  742 (856)
T PRK03059        665 TPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHG-YALDTFQVLDPEED-VHYRDIINLVE  742 (856)
T ss_pred             CCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCC-eEEEEEEEeCCCCC-CChHHHHHHHH
Confidence            45666888888899999999999999999999999999999999999987556 999999998 5555 45667999999


Q ss_pred             HHHHHhhcCCceee--ee---cC-----CCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeee
Q 024865          160 SRLWMELLQPLRVT--VV---SR-----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRH  222 (261)
Q Consensus       160 ~~L~~~L~~~~~~~--~~---~~-----~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~  222 (261)
                      +.|.++|.++....  ..   ++     ..++.|.|+       |.|+|+|.|||||||+|+.+|+++|+||++|||.| 
T Consensus       743 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T-  821 (856)
T PRK03059        743 HELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT-  821 (856)
T ss_pred             HHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee-
Confidence            99999998754211  10   11     115667663       69999999999999999999999999999999994 


Q ss_pred             eccceeEEEEEEEEeCCCCCccc-hHHHHHHHHHHH
Q 024865          223 MIGDREWEVYRVLLDEGDGLSVP-RNKIEEGVWKLL  257 (261)
Q Consensus       223 t~ger~~dv~~F~i~~~~g~~l~-~~~~~~~l~~~l  257 (261)
                       .|++|+|+  |||++.+...-. .+.+++.|.+.|
T Consensus       822 -~~~~v~Dv--F~V~~~~~~~~~~~~~l~~~L~~~L  854 (856)
T PRK03059        822 -LGERVEDT--FLIDGSGLSDNRLQIQLETELLDAL  854 (856)
T ss_pred             -cCCEEEEE--EEEcCCCCCCHHHHHHHHHHHHHHh
Confidence             59999997  999543321111 245555555443

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=8.3e-27  Score=234.72  Aligned_cols=165  Identities=18%  Similarity=0.200  Sum_probs=137.1

Q ss_pred             ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865           81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS  159 (261)
Q Consensus        81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~  159 (261)
                      ++.|.+.+++ .+.|+|+|+++||||||++|+++|+.+|+||++|+|+|  .+++++|+|+|. ++|.+.    .+++++
T Consensus       587 ~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t--~dg~~ld~F~V~~~~~~~~----~~~~l~  659 (774)
T PRK03381        587 GVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRS--HDGVAVLEFVVSPRFGSPP----DAALLR  659 (774)
T ss_pred             CCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcc----hHHHHH
Confidence            5778888888 89999999999999999999999999999999999995  445999999998 666542    368899


Q ss_pred             HHHHHhhcCCcee--e---e--e---cC----CCCcceeee-------eeeEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 024865          160 SRLWMELLQPLRV--T---V--V---SR----GPDTELLVA-------NPVELSGKGRPLVFHDITLALKMLDICIFSAE  218 (261)
Q Consensus       160 ~~L~~~L~~~~~~--~---~--~---~~----~~~~~v~~~-------t~iev~~~DRpGLL~dI~~~l~~~~l~I~~Ak  218 (261)
                      ++|.++|.++...  .   .  .   .+    ..++.|.|+       |+|+|+|.|||||||+|+.+|+++|+||++||
T Consensus       660 ~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~Ak  739 (774)
T PRK03381        660 QDLRRALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWAR  739 (774)
T ss_pred             HHHHHHHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEE
Confidence            9999999875321  0   0  0   00    114566553       69999999999999999999999999999999


Q ss_pred             EeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHHHHc
Q 024865          219 IGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLM  258 (261)
Q Consensus       219 I~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~~l~  258 (261)
                      |.  |.|++|+|+  |||++.+|.+++..  ++.|++.|.
T Consensus       740 I~--T~g~~a~D~--F~V~d~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        740 VA--TLGADVVDV--FYVTGAAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             Ee--ecCCeEEEE--EEEECCCCCcCchH--HHHHHHHhh
Confidence            99  569999997  99999999999843  677777664

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.86  E-value=1.8e-21  Score=140.02  Aligned_cols=69  Identities=20%  Similarity=0.222  Sum_probs=63.3

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHHHHcc
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLLMG  259 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~~l~~  259 (261)
                      |+|||.|.|||||||+|+++|+++|++|++|||+  |.||+|+|+  |||++.+|+||+.++.++.|++.|+.
T Consensus         2 Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~Dv--FyV~d~~g~kl~d~~~~~~l~~~L~~   70 (72)
T cd04895           2 TLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDV--FHVTDQLGNKLTDDSLIAYIEKSLGT   70 (72)
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEE--EEEECCCCCCCCCHHHHHHHHHHhcc
Confidence            6899999999999999999999999999999999  799999998  99999999999855677777877764

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.86  E-value=3e-21  Score=139.89  Aligned_cols=67  Identities=19%  Similarity=0.354  Sum_probs=58.9

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccch----HHHHHHHHHHH
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPR----NKIEEGVWKLL  257 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~----~~~~~~l~~~l  257 (261)
                      |+|||.|+|||||||+|+++|.++|++|++|||+  |.||+|+|+  |||++.+|.||+.    +.+.++|.+.|
T Consensus         2 TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~--FyV~d~~g~kl~~~~~~~~l~~~L~~al   72 (75)
T cd04897           2 SVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQE--YYIRHKDGRTLSTEGERQRVIKCLEAAI   72 (75)
T ss_pred             EEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEE--EEEEcCCCCccCCHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999999999  799999998  9999999999983    34555554443

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=99.85  E-value=1e-20  Score=192.59  Aligned_cols=135  Identities=19%  Similarity=0.284  Sum_probs=114.0

Q ss_pred             CcEEEEecCCCCCCCcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCCCC
Q 024865            1 MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCS   80 (261)
Q Consensus         1 lD~F~V~d~~~~~~~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~   80 (261)
                      +|+|+|+|.+|..++++++++|++.|.++|.++. .       +..      ..+.|++.++               |..
T Consensus       719 lD~F~V~d~~g~~~~~~~~~~l~~~L~~aL~~~~-~-------~~~------~~~~~~~~~~---------------~~~  769 (854)
T PRK01759        719 LDSFIVTELNGKLLEFDRRRQLEQALTKALNTNK-L-------KKL------NLEENHKLQH---------------FHV  769 (854)
T ss_pred             EEEEEEeCCCCCCCCHHHHHHHHHHHHHHHcCCC-C-------cch------hccccccccC---------------CCC
Confidence            5999999999887667899999999999998753 1       110      0112333333               577


Q ss_pred             ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865           81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS  159 (261)
Q Consensus        81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~  159 (261)
                      ||.|.|+|+.+..+|+|+|.|+|||||||+|+++|.++|++|+.|||.  |.|++|+|+|||+ .+|.++.++++ ++|+
T Consensus       770 ~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~--T~gerv~D~Fyv~~~~g~~l~~~~~-~~l~  846 (854)
T PRK01759        770 KTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKIT--TIGEKAEDFFILTNQQGQALDEEER-KALK  846 (854)
T ss_pred             CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEc--ccCceEEEEEEEECCCCCcCChHHH-HHHH
Confidence            899999999999999999999999999999999999999999999999  8999999999998 88999987655 9999


Q ss_pred             HHHHHhhc
Q 024865          160 SRLWMELL  167 (261)
Q Consensus       160 ~~L~~~L~  167 (261)
                      ++|.++|+
T Consensus       847 ~~L~~~l~  854 (854)
T PRK01759        847 SRLLSNLS  854 (854)
T ss_pred             HHHHHHhC
Confidence            99988763

>PRK05007 PII uridylyl-transferase; Provisional

Probab=99.85  E-value=1.8e-20  Score=191.32  Aligned_cols=137  Identities=21%  Similarity=0.267  Sum_probs=116.3

Q ss_pred             CcEEEEecCCCCCCCcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCCCC
Q 024865            1 MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCS   80 (261)
Q Consensus         1 lD~F~V~d~~~~~~~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~   80 (261)
                      +|+|+|+|.+|..++++++++|++.|.++|.++. ..     .+ .      .++.|++.++               |..
T Consensus       743 lD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~~-~~-----~~-~------~~~~~~~~~~---------------~~~  794 (884)
T PRK05007        743 MDTFIVLEPDGSPLSQDRHQVIRKALEQALTQSS-PQ-----PP-K------PRRLPAKLRH---------------FNV  794 (884)
T ss_pred             EEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCC-CC-----cc-c------ccccccccCC---------------CCC
Confidence            5899999999887667799999999999997753 11     01 1      1223444444               577


Q ss_pred             ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865           81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS  159 (261)
Q Consensus        81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~  159 (261)
                      +|.|.|+|+.+..+|+|+|.|+|||||||+|+++|.++|++|++|||.  |.|++|+|+|||+ .+|.+++ +++++.|+
T Consensus       795 ~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~--T~gera~DvFyV~~~~g~~l~-~~~~~~l~  871 (884)
T PRK05007        795 PTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARIT--TIGERVEDLFILATADRRALN-EELQQELR  871 (884)
T ss_pred             CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEe--ccCceEEEEEEEEcCCCCcCC-HHHHHHHH
Confidence            899999999999999999999999999999999999999999999999  8999999999998 7888888 67889999


Q ss_pred             HHHHHhhcC
Q 024865          160 SRLWMELLQ  168 (261)
Q Consensus       160 ~~L~~~L~~  168 (261)
                      ++|.++|..
T Consensus       872 ~~L~~~l~~  880 (884)
T PRK05007        872 QRLTEALNP  880 (884)
T ss_pred             HHHHHHHhh
Confidence            999998854

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.84  E-value=2.6e-20  Score=190.26  Aligned_cols=141  Identities=23%  Similarity=0.305  Sum_probs=117.6

Q ss_pred             CcEEEEecCCCCCC--CcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCC
Q 024865            1 MDLFFVTDTRELLH--TRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLT   78 (261)
Q Consensus         1 lD~F~V~d~~~~~~--~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~   78 (261)
                      +|+|+|+|++|..+  +++|+++|++.|.++|.++. ..      +..     ..++.|++.++               |
T Consensus       746 lD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~-~~------~~~-----~~~~~~~~~~~---------------~  798 (895)
T PRK00275        746 LDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPD-DY------PTI-----IQRRVPRQLKH---------------F  798 (895)
T ss_pred             EEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCC-cc------chh-----hhhhhhhhccC---------------C
Confidence            69999999998863  35799999999999998754 10      010     12234454444               4


Q ss_pred             CCceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHH
Q 024865           79 CSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNG  157 (261)
Q Consensus        79 ~~~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~  157 (261)
                      ..+|.|.|+++.+.++|+|+|+|+||||||++|+++|+++|+||++|+|+|  .|++|+|+|+|+ .+|.++.+++++++
T Consensus       799 ~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T--~g~~v~D~F~V~d~~g~~l~~~~~~~~  876 (895)
T PRK00275        799 AFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIAT--LGERVEDVFFITDADNQPLSDPQLCSR  876 (895)
T ss_pred             CCCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEe--cCCEEEEEEEEECCCCCCCCCHHHHHH
Confidence            678999999999999999999999999999999999999999999999995  488999999998 88999988889999


Q ss_pred             HHHHHHHhhcCCc
Q 024865          158 LSSRLWMELLQPL  170 (261)
Q Consensus       158 l~~~L~~~L~~~~  170 (261)
                      |+++|.++|.++.
T Consensus       877 l~~~L~~~L~~~~  889 (895)
T PRK00275        877 LQDAICEQLDARN  889 (895)
T ss_pred             HHHHHHHHHhccc
Confidence            9999999996543

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.83  E-value=5.9e-20  Score=133.12  Aligned_cols=73  Identities=19%  Similarity=0.367  Sum_probs=69.6

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcC
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ  168 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~  168 (261)
                      +|+|+|.|+||||||++|+++|+++|++|++|+|.  |.|++|.|+|||+ .+|.++.++++++.|+++|.+++..
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~--T~gera~D~FyV~d~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATID--TDGDDAHQEYYIRHKDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEe--ecCceEEEEEEEEcCCCCccCCHHHHHHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999  8999999999998 8899999999999999999998853

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.82  E-value=6.5e-20  Score=132.90  Aligned_cols=69  Identities=14%  Similarity=0.195  Sum_probs=60.4

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc----hHHHHHHHHHHHc
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLM  258 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~----~~~~~~~l~~~l~  258 (261)
                      |+|||.|.|||||||+|+++|+++|++|++|||+-.|.||||+|+  ||| +.+|+||+    +++++++|++.|.
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~--Fyv-~~~g~kl~d~~~~~~L~~~L~~~l~   73 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDL--FIV-QSDGKKIMDPKKQAALCARLREEMV   73 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEE--EEE-eCCCCccCCHHHHHHHHHHHHHHhc
Confidence            479999999999999999999999999999999955589999998  999 88899997    3567777776653

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.81  E-value=4.9e-19  Score=180.12  Aligned_cols=135  Identities=19%  Similarity=0.237  Sum_probs=111.0

Q ss_pred             CcEEEEecCCCCCCCcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCCCC
Q 024865            1 MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCS   80 (261)
Q Consensus         1 lD~F~V~d~~~~~~~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~   80 (261)
                      +|+|+|+++.+..  .+++++|++.|.++|.++. ...     . .     .+++.|++.++               |..
T Consensus       732 ld~f~V~~~~~~~--~~~~~~i~~~l~~~l~~~~-~~~-----~-~-----~~~~~~~~~~~---------------~~~  782 (869)
T PRK04374        732 FDVFEVLPQDTYA--DGDPQRLAAALRQVLAGDL-QKV-----R-P-----ARRAVPRQLRH---------------FRF  782 (869)
T ss_pred             EEEEEEeCCCCCC--hHHHHHHHHHHHHHHcCCC-Ccc-----c-c-----ccccCcccccC---------------CCC
Confidence            6999999988874  4678889999999998753 110     0 1     02223454444               578


Q ss_pred             ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865           81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS  159 (261)
Q Consensus        81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~  159 (261)
                      +|.|.++++.+.++|+|+|+|+||||||++|+++|+++|+||++|||+|  .|++|+|+|+|+ .+|.++.++++ ++|+
T Consensus       783 ~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T--~g~~a~D~F~V~d~~g~~~~~~~~-~~l~  859 (869)
T PRK04374        783 APRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIAT--FGERAEDQFQITDEHDRPLSESAR-QALR  859 (869)
T ss_pred             CCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEe--cCCEEEEEEEEECCCCCcCChHHH-HHHH
Confidence            8999999999999999999999999999999999999999999999994  588999999998 78888776655 9999


Q ss_pred             HHHHHhhc
Q 024865          160 SRLWMELL  167 (261)
Q Consensus       160 ~~L~~~L~  167 (261)
                      ++|.++|.
T Consensus       860 ~~L~~~l~  867 (869)
T PRK04374        860 DALCACLD  867 (869)
T ss_pred             HHHHHHhc
Confidence            99999884

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.81  E-value=2.4e-19  Score=129.90  Aligned_cols=75  Identities=63%  Similarity=1.006  Sum_probs=69.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  169 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~  169 (261)
                      |.|+|.|+|||||||+|+++|.++|++|++|||.+.|.|++++|+|||+.+|.++.++++++.|+++|.+++..|
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~~L~~~l~~~   75 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCARLREEMVCP   75 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHHHHHHHhcCC
Confidence            689999999999999999999999999999999966789999999999877888999999999999999988654

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.80  E-value=6.5e-19  Score=179.32  Aligned_cols=136  Identities=21%  Similarity=0.245  Sum_probs=110.7

Q ss_pred             CcEEEEecCCCCCCCcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCCCC
Q 024865            1 MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCS   80 (261)
Q Consensus         1 lD~F~V~d~~~~~~~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~   80 (261)
                      ||+|+|+|+.+...+++|+++|++.|.++|.++. ...     ...      .++.|++.++               |..
T Consensus       720 ld~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~~-~~~-----~~~------~~~~~~~~~~---------------~~~  772 (856)
T PRK03059        720 LDTFQVLDPEEDVHYRDIINLVEHELAERLAEQA-PLP-----EPS------KGRLSRQVKH---------------FPI  772 (856)
T ss_pred             EEEEEEeCCCCCCChHHHHHHHHHHHHHHHcCCC-Ccc-----hhh------cccccccccC---------------CCC
Confidence            6999999988875456799999999999998753 110     111      1223555444               577


Q ss_pred             ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHH
Q 024865           81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSS  160 (261)
Q Consensus        81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~  160 (261)
                      ++.|.++++.+.++|+|+|+|+||||||++|+++|+.+|+||++|+|+|  .|++|+|+|+|+  +.++.+++++++|++
T Consensus       773 ~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T--~~~~v~DvF~V~--~~~~~~~~~~~~l~~  848 (856)
T PRK03059        773 TPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT--LGERVEDTFLID--GSGLSDNRLQIQLET  848 (856)
T ss_pred             CceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEee--cCCEEEEEEEEc--CCCCCCHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999995  477999999995  333456789999999


Q ss_pred             HHHHhhc
Q 024865          161 RLWMELL  167 (261)
Q Consensus       161 ~L~~~L~  167 (261)
                      +|.++|+
T Consensus       849 ~L~~~L~  855 (856)
T PRK03059        849 ELLDALA  855 (856)
T ss_pred             HHHHHhc
Confidence            9998874

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.80  E-value=4.2e-19  Score=127.77  Aligned_cols=68  Identities=24%  Similarity=0.352  Sum_probs=64.1

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHH
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW  163 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~  163 (261)
                      +|+|+|.++||||||++|+++|.++|++|+.|+|.  |.|++|+|+|||+ .+|.++.++++++.|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIs--T~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYIS--SDGGWFMDVFHVTDQLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEe--ecCCeEEEEEEEECCCCCCCCCHHHHHHHHHHhc
Confidence            58999999999999999999999999999999999  8999999999998 88999999888888888775

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=1.2e-18  Score=171.22  Aligned_cols=136  Identities=21%  Similarity=0.289  Sum_probs=116.0

Q ss_pred             CcEEEEecCCCCCCCcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCCCC
Q 024865            1 MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCS   80 (261)
Q Consensus         1 lD~F~V~d~~~~~~~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~   80 (261)
                      +|+|+|+|++|.++.+.|...++..|.+++.... .      .|.      .+++.||++++|               ..
T Consensus       726 lDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~~-~------~~~------~~~r~~r~~~~f---------------~i  777 (867)
T COG2844         726 LDTFIVLEPDGFPVEEDRRAALRGELIEALLSGK-A------QPP------RRRRIPRKLRHF---------------PI  777 (867)
T ss_pred             eeeEEEecCCCCccchhHHHHHHHHHHHHHhcCC-C------CCc------cccccCccccee---------------cc
Confidence            6999999999998778899999999999886544 1      111      145678888884               77


Q ss_pred             ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865           81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS  159 (261)
Q Consensus        81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~  159 (261)
                      +|.|.|.|+.+..+|+|+|.+.||||||+.++++|++++++|++|||.  |.|++|+|+|+|+ ..|.++.+ +..+.+.
T Consensus       778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkIt--T~GErveD~F~vt~~~~~~l~~-~~~q~l~  854 (867)
T COG2844         778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKIT--TFGERVEDVFIVTDADGQALNA-ELRQSLL  854 (867)
T ss_pred             CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeec--cccccceeEEEEeccccccCCH-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999  8999999999998 88988854 5556677


Q ss_pred             HHHHHhhc
Q 024865          160 SRLWMELL  167 (261)
Q Consensus       160 ~~L~~~L~  167 (261)
                      +.|.+++.
T Consensus       855 ~~ll~al~  862 (867)
T COG2844         855 QRLLEALL  862 (867)
T ss_pred             HHHHHHhc
Confidence            77776664

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.77  E-value=1.1e-17  Score=171.95  Aligned_cols=141  Identities=23%  Similarity=0.359  Sum_probs=115.6

Q ss_pred             CcEEEEecCCCCC-CCcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCch-hhHhhhccCCCCCCCCCCCC
Q 024865            1 MDLFFVTDTRELL-HTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPS-AIIDMLHLDMPVELPSGSLT   78 (261)
Q Consensus         1 lD~F~V~d~~~~~-~~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~~~~~   78 (261)
                      +|+|+|++++|.. .+++++++|++.|.++|.++. ...     ...     ..+..|+ +.++               |
T Consensus       774 lD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~-~~~-----~~~-----~~r~~~~~~~~~---------------~  827 (931)
T PRK05092        774 LDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEV-RLP-----EAL-----AKRTKPKKRARA---------------F  827 (931)
T ss_pred             EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCC-CCc-----ccc-----ccccCccccccC---------------C
Confidence            5899999988876 456799999999999997643 111     000     0111232 2233               5


Q ss_pred             CCceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHH
Q 024865           79 CSNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNG  157 (261)
Q Consensus        79 ~~~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~  157 (261)
                      ..+|.|.|+|+.+.++|+|+|+|+||||||++|+++|+++|+||++|+|.  |.|++++|+|+|+ .+|.++.+++++++
T Consensus       828 ~~~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~--T~~~~~~D~F~v~d~~g~~i~~~~~~~~  905 (931)
T PRK05092        828 HVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIA--TYGERAVDVFYVTDLFGLKITNEARQAA  905 (931)
T ss_pred             CCCCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEE--EcCCEEEEEEEEeCCCCCcCCCHHHHHH
Confidence            67899999999999999999999999999999999999999999999999  5688999999998 88999988889999


Q ss_pred             HHHHHHHhhcCC
Q 024865          158 LSSRLWMELLQP  169 (261)
Q Consensus       158 l~~~L~~~L~~~  169 (261)
                      |+++|.++|.++
T Consensus       906 l~~~L~~~L~~~  917 (931)
T PRK05092        906 IRRALLAALAEG  917 (931)
T ss_pred             HHHHHHHHhcCc
Confidence            999999999754

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.75  E-value=1.3e-17  Score=170.21  Aligned_cols=138  Identities=21%  Similarity=0.246  Sum_probs=113.2

Q ss_pred             CcEEEEecCCCCCC-CcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCCC
Q 024865            1 MDLFFVTDTRELLH-TRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTC   79 (261)
Q Consensus         1 lD~F~V~d~~~~~~-~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~   79 (261)
                      +|+|+|.+.+|..+ +++++++|++.|.++|.+.. +..     +...    .+++.|++.++               |.
T Consensus       710 lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~-~~~-----~~~~----~~~~~~~~~~~---------------~~  764 (850)
T TIGR01693       710 LDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLA-KDP-----DTIS----ARRARRRRLQH---------------FA  764 (850)
T ss_pred             EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCC-ccc-----cccc----cccCCcccccC---------------CC
Confidence            58999999988864 45689999999999998743 110     1110    01113444444               56


Q ss_pred             CceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHH
Q 024865           80 SNVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGL  158 (261)
Q Consensus        80 ~~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l  158 (261)
                      .+|.|.|+|+.+.++|.|+|.|+|||||+++|+++|.++|++|++|+|.  |.|+++.|+|+|+ ..|.++.+ ++++.|
T Consensus       765 ~~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~--t~~~~~~d~F~v~~~~g~~~~~-~~~~~l  841 (850)
T TIGR01693       765 VPPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKIT--TFGEKAEDVFYVTDLFGLKLTD-EEEQRL  841 (850)
T ss_pred             CCCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEE--ecCccceeEEEEECCCCCCCCH-HHHHHH
Confidence            7899999999999999999999999999999999999999999999999  6888999999998 78999887 788999


Q ss_pred             HHHHHHhh
Q 024865          159 SSRLWMEL  166 (261)
Q Consensus       159 ~~~L~~~L  166 (261)
                      +++|.++|
T Consensus       842 ~~~L~~~l  849 (850)
T TIGR01693       842 LEVLAASV  849 (850)
T ss_pred             HHHHHHHh
Confidence            99998876

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.75  E-value=9.2e-18  Score=121.31  Aligned_cols=72  Identities=24%  Similarity=0.317  Sum_probs=64.6

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      +++|+|+++||||||++++++|+.+|+||++|+|+|+ .+++++|+|+|+ .+|.++.++++++++++.|.++|
T Consensus         1 ~~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           1 GTEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             CEEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHhhC
Confidence            4789999999999999999999999999999999975 455999999998 77888877889999999998764

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.74  E-value=2.7e-17  Score=119.99  Aligned_cols=71  Identities=23%  Similarity=0.370  Sum_probs=63.3

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcC
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ  168 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~  168 (261)
                      .++|+|+||||||++|+++|+++|+||++|+|+|+ .|++++|+|+|. ++|. ..+++++++++++|.++|.+
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt-~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTT-PDGRVLDLFFITDAREL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEEC-CCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHHHch
Confidence            58999999999999999999999999999999974 666999999998 6555 45678999999999999865

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.72  E-value=4.7e-17  Score=118.05  Aligned_cols=72  Identities=22%  Similarity=0.287  Sum_probs=65.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cC-CCCCCChhhHHHHHHHHHHhhcC
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-AD-GKKIVDPSKQNGLSSRLWMELLQ  168 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~-g~~l~~~~~~~~l~~~L~~~L~~  168 (261)
                      |+|+|+++||||||++|+++|+++|+||++|+|+|  .|++++|+|+|+ ++ |.++.++++++++++.|.++|.+
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t--~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWT--HNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEE--ECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            68999999999999999999999999999999994  477999999997 66 78888888999999999998853

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.71  E-value=1.4e-16  Score=160.91  Aligned_cols=133  Identities=17%  Similarity=0.240  Sum_probs=102.2

Q ss_pred             CcEEEEecCCCCCCCcchHHHHHHHHHHHhccccccccccccccceeeccccCCCCchhhHhhhccCCCCCCCCCCCCCC
Q 024865            1 MDLFFVTDTRELLHTRKRKEDTYEHLKTILGNAMISCDVEMVGTEITACSQASSFLPSAIIDMLHLDMPVELPSGSLTCS   80 (261)
Q Consensus         1 lD~F~V~d~~~~~~~~~r~~~i~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~   80 (261)
                      +|+|+|+++.|...   .++++++.|.++|.++. .......  ..     .....|++.++               |..
T Consensus       640 ld~F~V~~~~~~~~---~~~~l~~~L~~~L~~~~-~~~~~~~--~~-----~~~~~~~~~~~---------------~~~  693 (774)
T PRK03381        640 VLEFVVSPRFGSPP---DAALLRQDLRRALDGDL-DVLARLA--AR-----EAAAAAVPVRR---------------PAA  693 (774)
T ss_pred             EEEEEEECCCCCcc---hHHHHHHHHHHHHcCCC-chhhhhh--cc-----ccccccccccc---------------CCC
Confidence            58999999888642   36889999999998752 1100000  00     00012233333               567


Q ss_pred             ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHH
Q 024865           81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLS  159 (261)
Q Consensus        81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~  159 (261)
                      ++.|.++++.+.++|+|+|+|+||||||++|+++|+.+|+||++|+|+  |.|++|+|+|+|+ .+|.++.++  ++.|+
T Consensus       694 ~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~--T~g~~a~D~F~V~d~~g~~~~~~--~~~l~  769 (774)
T PRK03381        694 PPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVA--TLGADVVDVFYVTGAAGGPLADA--RAAVE  769 (774)
T ss_pred             CcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEe--ecCCeEEEEEEEECCCCCcCchH--HHHHH
Confidence            899999999999999999999999999999999999999999999999  4588999999998 889998764  67777


Q ss_pred             HHHH
Q 024865          160 SRLW  163 (261)
Q Consensus       160 ~~L~  163 (261)
                      ++|.
T Consensus       770 ~~L~  773 (774)
T PRK03381        770 QAVL  773 (774)
T ss_pred             HHhh
Confidence            7664

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.62  E-value=4.8e-15  Score=105.39  Aligned_cols=65  Identities=17%  Similarity=0.276  Sum_probs=54.5

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      .+|+|+++||||||++|+++|+++|+||++|+|+|+.+| +++|+|+|. .+|+      .-+.+.++|.++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG-~~LDtF~V~d~~~~------~~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDG-LALDIFVVTGWKRG------ETAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCC-eEEEEEEEecCCcc------chHHHHHHHHHhh
Confidence            589999999999999999999999999999999997566 999999997 5553      2245666666655

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.59  E-value=6.1e-14  Score=119.28  Aligned_cols=157  Identities=11%  Similarity=0.106  Sum_probs=107.8

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC-Cc
Q 024865           92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ-PL  170 (261)
Q Consensus        92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~-~~  170 (261)
                      ..+.+|+++++||||+.+.|+++|+++|+||.+.+..  ..|+.+.-++.|+  +.    +.....|+.+|...-.. ..
T Consensus         6 ~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t--~lgg~Fa~i~lvs--~~----~~~~~~le~~L~~l~~~~~L   77 (190)
T PRK11589          6 QHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLA--MLGEEFTFIMLLS--GS----WNAITLIESTLPLKGAELDL   77 (190)
T ss_pred             ccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhH--hhCCceEEEEEEe--CC----hhHHHHHHHHHHhhhhhcCe
Confidence            4678999999999999999999999999999999998  6777888888885  11    23566777776654422 33


Q ss_pred             eeeeec--CCCCcceeeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccc--eeEEEE--EEEEeCCCCCcc
Q 024865          171 RVTVVS--RGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGD--REWEVY--RVLLDEGDGLSV  244 (261)
Q Consensus       171 ~~~~~~--~~~~~~v~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ge--r~~dv~--~F~i~~~~g~~l  244 (261)
                      .....+  ...+........++|++.||||++++|+++|+++|+||  ....|++.+.  ...+++  .|.+.-+.|..+
T Consensus        78 ~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI--~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~  155 (190)
T PRK11589         78 LIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNI--AELVSRTQPAEGERPAQLHIQITAHSPASQDA  155 (190)
T ss_pred             EEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCCh--hheEEeeecCCCCCcccEEEEEEEEcCCCCCH
Confidence            332211  10010000023799999999999999999999999999  5666666653  344453  355556677766


Q ss_pred             c-hHHHHHHHHHHHc
Q 024865          245 P-RNKIEEGVWKLLM  258 (261)
Q Consensus       245 ~-~~~~~~~l~~~l~  258 (261)
                      . ...-.+.+.++|+
T Consensus       156 ~~L~~~l~~l~~eL~  170 (190)
T PRK11589        156 ANIEQAFKALCTELN  170 (190)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            6 2344455555553

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.58  E-value=1.8e-14  Score=104.38  Aligned_cols=69  Identities=22%  Similarity=0.321  Sum_probs=58.7

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCC-CCccc----hHHHHHHHHHHHcc
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGD-GLSVP----RNKIEEGVWKLLMG  259 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~-g~~l~----~~~~~~~l~~~l~~  259 (261)
                      |+|||.+.||||||++|+++|+++|+||+.|+|.  +.|+++.|+  |||++.+ |.++.    .+.+++.|.+.|.|
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~--t~~~~~~d~--f~V~d~~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAW--THNGRLACV--IYVRDEETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEE--EECCEEEEE--EEEEcCcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999999999999999  458898887  9999988 88775    24566666666654

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.57  E-value=2.7e-14  Score=104.12  Aligned_cols=67  Identities=18%  Similarity=0.246  Sum_probs=56.0

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc---hHHHHHHHHHHH
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP---RNKIEEGVWKLL  257 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~---~~~~~~~l~~~l  257 (261)
                      ++||+|.|||||||+|+.+|+++|++|++|+|.| +.|+++.|+  |||++.+|....   .+.+++.|.+.|
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~T-t~~~~v~D~--F~V~d~~~~~~~~~~~~~l~~~L~~~L   71 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVST-TPDGRVLDL--FFITDARELLHTKKRREETYDYLRAVL   71 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEE-CCCCEEEEE--EEEeCCCCCCCCHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999984 478898886  999999777333   355777776554

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.53  E-value=8.8e-14  Score=100.41  Aligned_cols=55  Identities=24%  Similarity=0.254  Sum_probs=49.6

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP  245 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~  245 (261)
                      .++|++.|||||||+|+.+|+.+|+||+.|+|.| +.++++.|+  |||++.+|.++.
T Consensus         3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T-~~~~~v~D~--F~v~~~~~~~~~   57 (73)
T cd04900           3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFT-TRDGYALDT--FVVLDPDGEPIG   57 (73)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEE-eCCCeEEEE--EEEECCCCCCCC
Confidence            6899999999999999999999999999999984 235788886  999999999886

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.50  E-value=2.1e-13  Score=98.22  Aligned_cols=67  Identities=21%  Similarity=0.489  Sum_probs=57.7

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHH
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLW  163 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~  163 (261)
                      .|.++|+++||||+|++|+++|+++|+||++|+++|  .+++++|+|+|. .++.++ +++++++++++|-
T Consensus         1 gtri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t--~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           1 GVRLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST--QGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             CeEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEec--CCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhc
Confidence            378999999999999999999999999999999984  455999999997 777776 6678877776654

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.46  E-value=5.7e-14  Score=99.90  Aligned_cols=73  Identities=74%  Similarity=1.132  Sum_probs=67.9

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc----hHHHHHHHHHHHccc
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP----RNKIEEGVWKLLMGW  260 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~----~~~~~~~l~~~l~~~  260 (261)
                      |.+|+++.-||-.+|||+-+|+.+|+.|++|.|+++..+++.+.||.|++.+.++. ++    ++.++++|++.||||
T Consensus         1 nPVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~-~~~~~~r~~i~drv~~~lmgw   77 (77)
T cd04898           1 NPVELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRL-KLGGRQRSKVVDRVTKTLMGW   77 (77)
T ss_pred             CcccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCcc-ccchHHHHHHHHHHHHHHhcC
Confidence            46899999999999999999999999999999999999999999999999777555 66    688999999999999

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.42  E-value=2.1e-12  Score=91.69  Aligned_cols=69  Identities=29%  Similarity=0.541  Sum_probs=61.0

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      |.+.|+++|+||+|++|+++|+++|++|.+|++.  +.+++++|+|++. .+|.+ .+++++++|+++|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIA--TLGERAEDVFYVTDADGQP-LDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEE--ecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhhC
Confidence            6799999999999999999999999999999998  4555999999998 77877 45679999999987754

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.39  E-value=6.6e-12  Score=125.00  Aligned_cols=143  Identities=14%  Similarity=0.105  Sum_probs=110.9

Q ss_pred             EEEEEEe-cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcCCcee
Q 024865           95 TLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQPLRV  172 (261)
Q Consensus        95 t~l~V~~-~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~~~~~  172 (261)
                      -.++|.. +|++|+|++++++|+.++++|++|++.  ++| .+...|.|. ..|.+.. +   ..+++.+..++.+...+
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~--~~~-~~~~~~~v~~~~~~~~~-~---~~~~~~~~~~~~~~~~~  619 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMV--ANG-PWSAEFDVRANGPQDFD-P---QEFLQAYKSGVYSELPD  619 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEe--cCC-ceEEEEEEecCCCCCCC-h---HHHHHHHHHhhcCCCCc
Confidence            4788888 999999999999999999999999999  555 888999998 5566532 2   56777888888776543


Q ss_pred             eeecCCCCcce-eeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHH
Q 024865          173 TVVSRGPDTEL-LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEE  251 (261)
Q Consensus       173 ~~~~~~~~~~v-~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~  251 (261)
                      .   ...+|.+ .+.+++||.|.||||+|+.|+++|.    .|..|+++  |.|-.+.|+  ||+..  |  ..+..+..
T Consensus       620 ~---~~~~~~~~~~~~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~--~~g~~~~~~--~~~~~--~--~~r~~~~~  684 (693)
T PRK00227        620 P---APGITATFWHGNILEVRTEDRRGALGALLGVLP----DLLWITAS--TPGATMIVQ--AALKP--G--FDRATVER  684 (693)
T ss_pred             c---cCCCCceEeeCcEEEEEeCccccHHHHHHHHhh----hhhhHhhc--CCCcceEEE--EEecC--c--ccHHHHHH
Confidence            2   1224444 4468999999999999999999999    88999999  788888776  99962  1  23556666


Q ss_pred             HHHHHHcc
Q 024865          252 GVWKLLMG  259 (261)
Q Consensus       252 ~l~~~l~~  259 (261)
                      .|.+-|-|
T Consensus       685 ~~~~~~~~  692 (693)
T PRK00227        685 DVTRVLAG  692 (693)
T ss_pred             HHHHHHhc
Confidence            66665544

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.23  E-value=9.2e-11  Score=84.44  Aligned_cols=66  Identities=24%  Similarity=0.302  Sum_probs=53.8

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHHHH
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLL  257 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~~l  257 (261)
                      +.++|.+.||||+|++|+.+|+++|+||++|+|.+  .++.+.|+  |+|.+.+|.+++. +..++|++.|
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t--~~~~~~d~--f~v~~~~~~~~~~-~~~~~l~~~l   67 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEIST--QGDMAVNV--FYVTDANGNPVDP-KTIEAVRQEI   67 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEec--CCCeEEEE--EEEECCCCCcCCH-HHHHHHHHHh
Confidence            36899999999999999999999999999999984  35576665  9999999998853 3555565554

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=99.12  E-value=7.9e-10  Score=77.87  Aligned_cols=69  Identities=33%  Similarity=0.568  Sum_probs=58.5

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      +.|.|.++|+||+|++|+++|+.+|++|.++++.  +.+++..+.|++. +++.. .++++++.+++.|.+++
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~~~   70 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARIS--TTGERALDVFYVTDSDGRP-LDPERIARLEEALEDAL   70 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEe--ecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHhhC
Confidence            4689999999999999999999999999999998  4444999999997 66665 45578899998887653

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.12  E-value=6.9e-10  Score=78.63  Aligned_cols=65  Identities=26%  Similarity=0.435  Sum_probs=53.5

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccch---HHHHHHHHH
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPR---NKIEEGVWK  255 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~---~~~~~~l~~  255 (261)
                      |.+.|.+.||||+|++|+++|+++|++|..|++.  +.+..+.|+  |++++.+|.+...   +.++++|.+
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~--~~~~~~~~~--f~i~~~~~~~~~~~~~~~i~~~l~~   68 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIA--TLGERAEDV--FYVTDADGQPLDPERQEALRAALGE   68 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEE--ecCCEEEEE--EEEECCCCCcCCHHHHHHHHHHHHh
Confidence            4689999999999999999999999999999998  445577665  9999999998652   445555544

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=98.96  E-value=3.5e-09  Score=87.36  Aligned_cols=122  Identities=16%  Similarity=0.125  Sum_probs=84.8

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhc-CCc
Q 024865           92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL-QPL  170 (261)
Q Consensus        92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~-~~~  170 (261)
                      ..|.+|++++.||||+.-.++++..++|+||.++|+.  ..|+.+.-+..|+  |.    .+-...|++.|...=. +..
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla--~~g~~~a~i~lis--gs----~dav~~le~~l~~l~~~~~L   74 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLA--MLGEEFAGIMLIS--GS----WDAVTLLEATLPLLGAELDL   74 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHH--HhhcceeEEEEEe--eC----HHHHHHHHHHhhcccccCCe
Confidence            3578999999999999999999999999999999999  7887776666665  21    2344556665543222 222


Q ss_pred             eeeeecCCCCc-ceee-eeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeee
Q 024865          171 RVTVVSRGPDT-ELLV-ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHM  223 (261)
Q Consensus       171 ~~~~~~~~~~~-~v~~-~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t  223 (261)
                      .+...+..+.+ +-.- -..++|.+.||||++.++++.|..+|+||  +...+++
T Consensus        75 ~v~m~rt~~~~~~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~ini--e~L~~~~  127 (176)
T COG2716          75 LVVMKRTGAHPTPANPAPVWVYVDANDRPGIVEEFTALFDGHGINI--ENLVSRT  127 (176)
T ss_pred             EEEEeecCCCccCCCCceEEEEEEecCCccHHHHHHHHHHhcCCch--hhceeee
Confidence            22222211100 0000 12689999999999999999999999999  4444333

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=98.89  E-value=1.2e-08  Score=72.68  Aligned_cols=65  Identities=9%  Similarity=0.061  Sum_probs=50.6

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHHHH
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWKLL  257 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~~l  257 (261)
                      .|-|+++|||||+++|+.+|..+|+||+.|+|-+... ..+-|  +|+|.+.+|..-  +.+.++|++.|
T Consensus         3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~d-G~~LD--tF~V~d~~~~~~--~~~~~~~~~~~   67 (68)
T cd04928           3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDD-GLALD--IFVVTGWKRGET--AALGHALQKEI   67 (68)
T ss_pred             EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCC-CeEEE--EEEEecCCccch--HHHHHHHHHhh
Confidence            4779999999999999999999999999999975333 33545  599999887654  34566666544

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.82  E-value=4.8e-08  Score=68.63  Aligned_cols=65  Identities=29%  Similarity=0.439  Sum_probs=50.8

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccch---HHHHHHHHHH
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPR---NKIEEGVWKL  256 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~---~~~~~~l~~~  256 (261)
                      .+.|.+.|+||+|++|+.+|+++|++|.++++.+  .+++..++  |++.+.+|.+.+.   +.+..+|++.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~--~~~~~~~~--~~v~~~~~~~~~~~~~~~l~~~l~~~   69 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARIST--TGERALDV--FYVTDSDGRPLDPERIARLEEALEDA   69 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEee--cCCEEEEE--EEEECCCCCcCCHHHHHHHHHHHHhh
Confidence            5889999999999999999999999999999973  34455554  9999888777552   4455555443

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.60  E-value=6.6e-07  Score=62.00  Aligned_cols=64  Identities=22%  Similarity=0.238  Sum_probs=46.5

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  165 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~  165 (261)
                      |.|.|.++||||+|++++++|+++|+||.++.+.+...+......+.+.       +....+.+.++|.+.
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~   64 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVV-------DEEDLEKLLEELEAL   64 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEE-------EGHGHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEEC-------CCCCHHHHHHHHHcc
Confidence            5789999999999999999999999999999999643322333333332       134556666666654

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.50  E-value=1.4e-06  Score=63.26  Aligned_cols=65  Identities=14%  Similarity=0.157  Sum_probs=51.5

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      +..|+++++||||+++.++++|+++|+||.+.+..  +.|+++.-.+.|+-+      ++..++++++|.+..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~--~~~~~f~~~~~v~~~------~~~~~~l~~~L~~l~   66 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA--VLGGRFTLIMLVSIP------EDSLERLESALEELA   66 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE--EETTEEEEEEEEEES------HHHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE--EEcCeEEEEEEEEeC------cccHHHHHHHHHHHH
Confidence            45899999999999999999999999999999999  667788888888721      346678888877754

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.28  E-value=5.8e-06  Score=57.18  Aligned_cols=34  Identities=26%  Similarity=0.182  Sum_probs=31.8

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGR  221 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t  221 (261)
                      .+.|.+.||||+|++|+++|+++|+||..+.+.+
T Consensus         2 ~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~   35 (66)
T PF01842_consen    2 RVRVIVPDRPGILADVTEILADHGINIDSISQSS   35 (66)
T ss_dssp             EEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEe
Confidence            5889999999999999999999999999999874

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.19  E-value=1.4e-05  Score=58.06  Aligned_cols=63  Identities=13%  Similarity=0.147  Sum_probs=46.8

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  165 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~  165 (261)
                      .+|++.++||||+.++|+++|+++|+||.+++-++  .++++.-...++.+  .    ...+.|++.|...
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~--~~~~F~m~~~~~~~--~----~~~~~l~~~l~~~   64 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAI--LGTEFALTMLVEGS--W----DAIAKLEAALPGL   64 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeE--EcCEEEEEEEEEec--c----ccHHHHHHHHHHH
Confidence            57899999999999999999999999999999984  55466444444411  1    1345666666653

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.16  E-value=1.3e-05  Score=57.84  Aligned_cols=54  Identities=19%  Similarity=0.209  Sum_probs=39.7

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP  245 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~  245 (261)
                      ++.|.+.||||++++|+++|+++|+||...+-.  +.+.+-.-  .|.+.-+.+..+.
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~--~~~~~f~~--~~~v~~p~~~~~~   54 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQA--VIHGRLSL--GILVQIPDSADSE   54 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccE--EEcCeeEE--EEEEEcCCCCCHH
Confidence            478999999999999999999999999776543  44433212  4667666664454

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.13  E-value=1.5e-05  Score=57.51  Aligned_cols=63  Identities=14%  Similarity=0.122  Sum_probs=47.2

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      .++|.++||||+.++++++|+++|+||.+.+-.  +.++++.-.|.+. +.+.      ..+.++++|....
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~--~~~~~f~~~~~v~~p~~~------~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQA--VIHGRLSLGILVQIPDSA------DSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccE--EEcCeeEEEEEEEcCCCC------CHHHHHHHHHHHH
Confidence            378999999999999999999999999988755  4455766677776 4331      2356666666544

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.06  E-value=2e-05  Score=54.52  Aligned_cols=67  Identities=22%  Similarity=0.375  Sum_probs=57.7

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  165 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~  165 (261)
                      |+|+|.++|+-||=.++++++...|++|..+.++  |+|....=+|+|.+....+  +-+|..|+++|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~s--TDGkWCyiv~wVv~~~~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDS--TDGRWCYIVFWVVPRPPSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccc--cCCcEEEEEEEEecCCCCC--cccHHHHHHHHHhc
Confidence            5799999999999999999999999999999999  8998999999997433332  46899999998764

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=98.01  E-value=4.9e-05  Score=55.22  Aligned_cols=66  Identities=15%  Similarity=0.210  Sum_probs=48.2

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      .+.|.|.+.||||+|++|+.++++.|+||.+..+.+...++.+.=.|.+.     +.+.++++.+.+.|++
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~-----V~d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVE-----VKDLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEE-----ESSHHHHHHHHHHHCT
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEE-----ECCHHHHHHHHHHHHC
Confidence            46899999999999999999999999999999998542355777777775     2334566666666543

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.98  E-value=7.3e-05  Score=53.54  Aligned_cols=34  Identities=12%  Similarity=0.221  Sum_probs=31.6

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEE
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR  129 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t  129 (261)
                      +|+|.++||||++++|+++|+++|+||.+.+-.+
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~   34 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV   34 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence            4789999999999999999999999999988875

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.95  E-value=0.0002  Score=55.96  Aligned_cols=97  Identities=15%  Similarity=0.157  Sum_probs=67.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCceeee
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTV  174 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~~~~~  174 (261)
                      -++.|+..++||-|+..+.+|..+|+||..-.|.  ..|+.-+=-..|+       +|+.   -.+.|.++  +      
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiA--dt~dFGIiRmvV~-------~~d~---A~~~Lee~--g------   63 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIA--DTGDFGIIRMVVD-------RPDE---AHSVLEEA--G------   63 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEec--cccCcceEEEEcC-------ChHH---HHHHHHHC--C------
Confidence            3688999999999999999999999999987777  4453322222232       1222   11222221  1      


Q ss_pred             ecCCCCcceeeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 024865          175 VSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSA  217 (261)
Q Consensus       175 ~~~~~~~~v~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~A  217 (261)
                            ..|....++-|.-.|+||=|+.|+.+|.++++|+-++
T Consensus        64 ------F~Vr~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYi  100 (142)
T COG4747          64 ------FTVRETDVLAVEMEDVPGGLSRIAEVLGDADINLDYI  100 (142)
T ss_pred             ------cEEEeeeEEEEEecCCCCcHHHHHHHHhhcCcCceee
Confidence                  1233345788888999999999999999999999544

>PRK00194 hypothetical protein; Validated

Probab=97.91  E-value=5.6e-05  Score=56.24  Aligned_cols=64  Identities=11%  Similarity=0.207  Sum_probs=46.4

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHH
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      ...++|.++||||++++++++|+++|+||.+..-.  +.++++.-.+.+. +. .+    ...+.+++.|.+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~--~~~~~~~~~~~v~~~~-~~----~~~~~l~~~l~~   67 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQT--IMDGYFTMIMLVDISE-SK----KDFAELKEELEE   67 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhH--hhCCeeEEEEEEEecC-CC----CCHHHHHHHHHH
Confidence            57899999999999999999999999999987766  4555655555554 31 11    123556665555

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=97.89  E-value=0.0001  Score=53.34  Aligned_cols=48  Identities=19%  Similarity=0.167  Sum_probs=36.1

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCC
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG  239 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~  239 (261)
                      +|.+.+.||||++++|+++|+++|+||...+.+  +.|.+.--  .+.++-+
T Consensus         4 vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~--~~~~~f~~--~~~v~~~   51 (76)
T PF13740_consen    4 VITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQA--VLGGRFTL--IMLVSIP   51 (76)
T ss_dssp             EEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEE--EETTEEEE--EEEEEES
T ss_pred             EEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEE--EEcCeEEE--EEEEEeC
Confidence            689999999999999999999999999999988  56666322  3555433

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.87  E-value=0.00012  Score=53.01  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=32.0

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEe
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRR  130 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~  130 (261)
                      .++|.++|+||+.++|+++|+++|+||.+.+..+.
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~   35 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETY   35 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeee
Confidence            37899999999999999999999999999988843

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.86  E-value=0.0002  Score=50.81  Aligned_cols=62  Identities=3%  Similarity=0.088  Sum_probs=46.4

Q ss_pred             EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865           97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      +.|.+.||||+|++|+.++++.|.||.+....+. ..+.+.-.|.+.     +.+.++++.+.+.|++
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~-~~~~~~~~~~ve-----v~~~~~l~~i~~~L~~   63 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQ-GRDYTVRDITVD-----APSEEHAETIVAAVRA   63 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEe-cCCEEEEEEEEE-----cCCHHHHHHHHHHHhc
Confidence            6789999999999999999999999998887643 334666667665     2234566666666554

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.84  E-value=7.4e-05  Score=54.23  Aligned_cols=33  Identities=18%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      ++.+.|+||||++++|++.|+++|+||...+-.
T Consensus         3 iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~   35 (77)
T cd04893           3 VISALGTDRPGILNELTRAVSESGCNILDSRMA   35 (77)
T ss_pred             EEEEEeCCCChHHHHHHHHHHHcCCCEEEceee
Confidence            588999999999999999999999999888776

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.83  E-value=8.1e-05  Score=55.25  Aligned_cols=65  Identities=12%  Similarity=0.130  Sum_probs=47.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ..+++.++|+||++++|+++|+++|+||.+..-.  +.++++.-.+.+. +. .    ....+.+++.|....
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~--~~~~~f~~~~~v~~~~-~----~~~~~~L~~~l~~l~   67 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQT--IMDGYFTMIMIVDISE-S----NLDFAELQEELEELG   67 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhH--hhCCccEEEEEEEeCC-C----CCCHHHHHHHHHHHH
Confidence            4789999999999999999999999999988877  4555665555665 31 0    112456666666543

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.77  E-value=0.00023  Score=50.89  Aligned_cols=33  Identities=18%  Similarity=0.055  Sum_probs=29.7

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      ++.|.|+||||++++|++.|+++|+||...+-.
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~   33 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQF   33 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeee
Confidence            478999999999999999999999999776654

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.69  E-value=0.00021  Score=51.80  Aligned_cols=37  Identities=19%  Similarity=0.225  Sum_probs=32.1

Q ss_pred             eeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865          185 VANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR  221 (261)
Q Consensus       185 ~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t  221 (261)
                      |...+.|.+.||||+|++|++++++.|+||.+..+.+
T Consensus         5 f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~   41 (80)
T PF13291_consen    5 FPVRLRIEAEDRPGLLADITSVISENGVNIRSINART   41 (80)
T ss_dssp             EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE
T ss_pred             EEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEE
Confidence            5567999999999999999999999999999998874

>PRK00194 hypothetical protein; Validated

Probab=97.63  E-value=0.00024  Score=52.76  Aligned_cols=31  Identities=16%  Similarity=0.309  Sum_probs=28.3

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAE  218 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~Ak  218 (261)
                      ++.|.+.||||++++|++.|+++|+||....
T Consensus         5 ~ltv~g~DrpGiva~vt~~la~~g~nI~~~~   35 (90)
T PRK00194          5 IITVIGKDKVGIIAGVSTVLAELNVNILDIS   35 (90)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEehh
Confidence            6899999999999999999999999995544

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=97.61  E-value=0.00023  Score=52.75  Aligned_cols=38  Identities=16%  Similarity=0.275  Sum_probs=31.4

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccce
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDR  227 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger  227 (261)
                      ++.+.|+||||++++|++.|+++|+||....-.  +.+.+
T Consensus         3 vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~--~~~~~   40 (88)
T cd04872           3 VITVVGKDRVGIVAGVSTKLAELNVNILDISQT--IMDGY   40 (88)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEechhH--hhCCc
Confidence            689999999999999999999999999655543  44433

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=97.53  E-value=0.00045  Score=69.51  Aligned_cols=69  Identities=12%  Similarity=0.115  Sum_probs=55.9

Q ss_pred             ceEEEEEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHH
Q 024865           81 NVSVTIDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSS  160 (261)
Q Consensus        81 ~~~V~i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~  160 (261)
                      +|.+.|..      ++++|.+.||||+|+.++++|.    .|.+|++.  |.|..++|.|++.+       ......+..
T Consensus       624 ~~~~~~~~------~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~--~~g~~~~~~~~~~~-------~~~r~~~~~  684 (693)
T PRK00227        624 ITATFWHG------NILEVRTEDRRGALGALLGVLP----DLLWITAS--TPGATMIVQAALKP-------GFDRATVER  684 (693)
T ss_pred             CCceEeeC------cEEEEEeCccccHHHHHHHHhh----hhhhHhhc--CCCcceEEEEEecC-------cccHHHHHH
Confidence            56676753      7999999999999999999999    89999999  89999999999961       122456777


Q ss_pred             HHHHhhcC
Q 024865          161 RLWMELLQ  168 (261)
Q Consensus       161 ~L~~~L~~  168 (261)
                      ++..+|.+
T Consensus       685 ~~~~~~~~  692 (693)
T PRK00227        685 DVTRVLAG  692 (693)
T ss_pred             HHHHHHhc
Confidence            77777643

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=97.46  E-value=0.0012  Score=47.65  Aligned_cols=33  Identities=30%  Similarity=0.385  Sum_probs=29.9

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.|.+.||||++++|++.|+++|+||...+-.
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~   33 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTE   33 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEee
Confidence            378999999999999999999999999777765

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.42  E-value=0.00018  Score=53.60  Aligned_cols=30  Identities=17%  Similarity=0.241  Sum_probs=27.7

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEE
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFS  216 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~  216 (261)
                      .+|.|.+.||||+.+.|+++|+++|+||..
T Consensus         4 avITV~GkDr~GIva~is~vLAe~~vNIld   33 (90)
T COG3830           4 AVITVIGKDRVGIVAAVSRVLAEHGVNILD   33 (90)
T ss_pred             EEEEEEcCCCCchhHHHHHHHHHcCCcEEE
Confidence            379999999999999999999999999953

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.41  E-value=0.0016  Score=45.09  Aligned_cols=63  Identities=8%  Similarity=0.043  Sum_probs=42.0

Q ss_pred             EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEee---CCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865           97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ---RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t---~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      +.|.++|+||+|++|+.+|.++|+||.+.......   ..+.+.-.|.+.-     .+.+.++.+.+.|.+
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-----~~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-----RGAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence            45788999999999999999999999976655321   1234444444431     123455666666554

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.37  E-value=0.007  Score=54.68  Aligned_cols=65  Identities=14%  Similarity=0.170  Sum_probs=47.2

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      .|+|.|+||||+.|.|+++|+++|+||.+..-++...++++.-.+.++.++..    ...+.|+++|.+
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~----~~~~~l~~~l~~   66 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFR----LEESSLLAAFKS   66 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCC----CCHHHHHHHHHH
Confidence            58999999999999999999999999999887743234566656666522211    124566666666

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=97.30  E-value=0.0012  Score=49.46  Aligned_cols=66  Identities=14%  Similarity=0.049  Sum_probs=47.3

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc--hHHHHHHHHHHHc
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP--RNKIEEGVWKLLM  258 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~--~~~~~~~l~~~l~  258 (261)
                      .+-+...|+||-|+++-..|+++|||+  .+|..+-...+-++ |.||| |-+|. ..  .+.+.+.|++.|-
T Consensus        16 slif~l~~~pGsL~~vL~~Fa~~~INL--t~IeSRP~~~~~~~-Y~FfV-Dieg~-~~~~~~~~l~~L~~~~~   83 (90)
T cd04931          16 SLIFSLKEEVGALAKVLRLFEEKDINL--THIESRPSRLNKDE-YEFFI-NLDKK-SAPALDPIIKSLRNDIG   83 (90)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCE--EEEEeccCCCCCce-EEEEE-EEEcC-CCHHHHHHHHHHHHHhC
Confidence            455566899999999999999999999  78864444444556 57999 45565 23  2456677776553

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.20  E-value=0.003  Score=46.67  Aligned_cols=66  Identities=9%  Similarity=0.084  Sum_probs=46.1

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      .+.+...|+||.|++|+++|++.|+||.+=.+..+.+.+.---++.+. .|    +++..+++.+.|.+.+
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~-~~----d~~~ieqI~kQL~Kli   69 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD-IQ----DDTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe-CC----CHHHHHHHHHHHhCCc
Confidence            689999999999999999999999999987666543332333334332 12    3456677777666543

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=97.20  E-value=0.0039  Score=45.33  Aligned_cols=66  Identities=12%  Similarity=0.068  Sum_probs=44.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ..+.+...|+||.|++|+++|++.|+||.+=.+.-+.+.+..-=++.+.  |    ++...++|.+.|.+..
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~--~----~~~~i~qi~kQL~KLi   68 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV--C----TENEATLLVSQLKKLI   68 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE--C----CHHHHHHHHHHHhCCc
Confidence            3689999999999999999999999999976555322232322233332  2    2456667777666543

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=97.19  E-value=0.0021  Score=46.69  Aligned_cols=64  Identities=17%  Similarity=0.230  Sum_probs=41.6

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCC-ccc-hHHHHHHHHH
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL-SVP-RNKIEEGVWK  255 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~-~l~-~~~~~~~l~~  255 (261)
                      .+.+...|+||-|++|...|+++|+||.+-.  .+..+..-+. +.|||.. +|. ... .+.+.+.|++
T Consensus         3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~--s~p~~~~~~~-~~f~vd~-~~~~~~~~~~~~l~~l~~   68 (80)
T cd04905           3 SIVFTLPNKPGALYDVLGVFAERGINLTKIE--SRPSKGGLWE-YVFFIDF-EGHIEDPNVAEALEELKR   68 (80)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCcCEEEEE--EEEcCCCCce-EEEEEEE-ECCCCCHHHHHHHHHHHH
Confidence            4677778999999999999999999995543  2233333334 4688833 344 111 2445566655

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=97.19  E-value=0.0014  Score=47.29  Aligned_cols=63  Identities=13%  Similarity=0.079  Sum_probs=43.9

Q ss_pred             eEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHH
Q 024865          189 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  255 (261)
Q Consensus       189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~  255 (261)
                      +-+...|+||-|+++-..|+.+|+|+  .+|..+.....-++ |.||| |-+|..-..+.+.+.|++
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl--~~IeSRP~~~~~~~-y~F~i-d~e~~~~~i~~~l~~l~~   65 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINV--VHIESRKSKRRSSE-FEIFV-DCECDQRRLDELVQLLKR   65 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCE--EEEEeccCCCCCce-EEEEE-EEEcCHHHHHHHHHHHHH
Confidence            34455899999999999999999999  78865554444456 57999 445654322445555554

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=97.19  E-value=0.0041  Score=47.12  Aligned_cols=67  Identities=9%  Similarity=0.108  Sum_probs=45.5

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      +...+.+...|+||.|++|++.|++.|+||.+=...-+.+.+..-=+..+ . +     ++..+++.+.|.+..
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv-~-~-----~~~i~Qi~kQL~KLi   73 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLV-N-D-----DQRLEQMISQIEKLE   73 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEE-c-C-----chHHHHHHHHHhCCc
Confidence            44579999999999999999999999999997665543333222222222 2 1     346666766666533

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.19  E-value=0.0034  Score=56.86  Aligned_cols=70  Identities=10%  Similarity=0.050  Sum_probs=48.3

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ....++|.++||||+.+.|+++|+++|+||.+.+..+...++.+.-.+.+.-+..    +...+.|+++|.+.-
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~----~~~~~~L~~~L~~l~   74 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGL----IFNLETLRADFAALA   74 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCC----CCCHHHHHHHHHHHH
Confidence            4678999999999999999999999999999988884225544333333331111    123567777666543

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.18  E-value=0.0018  Score=43.55  Aligned_cols=46  Identities=17%  Similarity=0.322  Sum_probs=39.0

Q ss_pred             EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      +.|..+|+||.+++++.+|.++|+||.+..+... .++.++-.|.++
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~-~~~~~~~~~~v~   46 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAET-RGEFGILRLIFS   46 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEc-cCCcEEEEEEEC
Confidence            4578899999999999999999999999998854 356887777774

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>PRK08577 hypothetical protein; Provisional

Probab=97.16  E-value=0.0097  Score=47.81  Aligned_cols=69  Identities=16%  Similarity=0.221  Sum_probs=48.1

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHH
Q 024865           91 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        91 ~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      ....+.+.|.+.|+||+|++|+++|+++++||.+....+...++.+.-.|.+. ++.     +..++.+.+.|.+
T Consensus        53 ~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~-----~~~l~~l~~~L~~  122 (136)
T PRK08577         53 GKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS-----DIDLEELEEELKK  122 (136)
T ss_pred             CccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc-----hhhHHHHHHHHHc
Confidence            34578999999999999999999999999999987776433244554555554 222     1244555555543

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.14  E-value=0.0022  Score=45.41  Aligned_cols=32  Identities=19%  Similarity=0.112  Sum_probs=29.2

Q ss_pred             eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      +.|.+.||||+|++|+.++++.|.||......
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~   33 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLV   33 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEE
Confidence            68899999999999999999999999776665

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.14  E-value=0.0035  Score=44.81  Aligned_cols=59  Identities=17%  Similarity=0.290  Sum_probs=42.0

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      .+.|.+.||+|+|++|+.+++..|+||.+..+.  +.| .  -.|.+.     +.+.++++.+.++|++
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~--~~~-~--i~l~i~-----v~~~~~L~~li~~L~~   60 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEID--PKG-R--IYLNFP-----TIEFEKLQTLMPEIRR   60 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEe--cCC-e--EEEEeE-----ecCHHHHHHHHHHHhC
Confidence            478999999999999999999999999988886  334 3  112232     1234556666555543

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=97.13  E-value=0.0047  Score=43.81  Aligned_cols=63  Identities=10%  Similarity=0.035  Sum_probs=43.6

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChh-hHHHHHHHHHH
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPS-KQNGLSSRLWM  164 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~-~~~~l~~~L~~  164 (261)
                      .+.|.+.|+||++++|+.+++++|+||......+ ..++.+.=.|.+..     .+.+ .++.+.++|++
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~-~~~~~~~i~~~v~v-----~~~~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNI-PIHGRANVTISIDT-----STMNGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCC-CCCCeEEEEEEEEc-----CchHHHHHHHHHHHhc
Confidence            4789999999999999999999999999765442 12335555566641     1223 55666666554

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=97.12  E-value=0.0018  Score=46.53  Aligned_cols=63  Identities=8%  Similarity=0.037  Sum_probs=42.1

Q ss_pred             eEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHH
Q 024865          189 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  255 (261)
Q Consensus       189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~  255 (261)
                      +-+...|+||-|++|-..|+++|||+  .+|..+....+-++ |.||| |-+|..-..+++.+.|++
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNl--t~IeSRP~~~~~~~-y~Ffv-d~~~~~~~~~~~l~~L~~   65 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNL--THIESRPSRRNGSE-YEFFV-DCEVDRGDLDQLISSLRR   65 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcE--EEEECCCCCCCCce-EEEEE-EEEcChHHHHHHHHHHHH
Confidence            34555889999999999999999999  78864444334445 57999 555632222344455444

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.10  E-value=0.016  Score=52.57  Aligned_cols=36  Identities=8%  Similarity=0.110  Sum_probs=33.2

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEE
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  128 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~  128 (261)
                      ...+|+|.|+||||+.|.|+++|+++|+||.+..-+
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccc
Confidence            356899999999999999999999999999988876

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.10  E-value=0.00077  Score=50.21  Aligned_cols=66  Identities=12%  Similarity=0.203  Sum_probs=44.9

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ...++|.++||||+-|.++++|+++|+||++  |+-+--.++.--.+.|. ++.     ......+++.|....
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIld--isQtvm~~~ftm~~lV~~~~~-----~~d~~~lr~~l~~~~   69 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILD--ISQTVMDGFFTMIMLVDISKE-----VVDFAALRDELAAEG   69 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEE--HHHHHHhhhceeeeEEcCChH-----hccHHHHHHHHHHHH
Confidence            4689999999999999999999999999994  54222233555555665 211     123455666665544

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=97.07  E-value=0.0059  Score=50.51  Aligned_cols=65  Identities=8%  Similarity=0.163  Sum_probs=47.9

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      .+.|...|+||.|++|+++|++.|+||.+--+..+.+.+...=+|.|.  +    ++...+.+.+.|.+..
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~--~----d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV--G----DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE--C----CHHHHHHHHHHHhcCc
Confidence            688999999999999999999999999987776432233555555554  2    2456677777776654

acetohydroxyacid synthase is a synonym.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=97.05  E-value=0.0057  Score=42.97  Aligned_cols=64  Identities=13%  Similarity=0.178  Sum_probs=42.6

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      -+.|.+.|+||++++++.+|.++|+||......+...++.+.=.|.+..     .+.+..+.+.+.|.+
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~-----~~~~~l~~~i~~L~~   65 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE-----TSEAALNAALAEIEA   65 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc-----CCHHHHHHHHHHHHc
Confidence            4678899999999999999999999999877653222234433343321     223455555555543

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.03  E-value=0.0057  Score=42.62  Aligned_cols=45  Identities=9%  Similarity=0.200  Sum_probs=36.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      ..+.|..+|+||.|++++.+|.++|+||.+..++  ..++.  -++.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~--~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIA--DTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEE--ecCCC--CEEEEE
Confidence            4688999999999999999999999999988876  44433  455554

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=97.03  E-value=0.0073  Score=50.19  Aligned_cols=66  Identities=8%  Similarity=0.123  Sum_probs=48.1

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ..+.|...|+||.|++|+++|+++|+||.+--+..+.+.+...=+|.|.  |    ++...+++...|.+..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~--~----~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS--G----DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE--C----CHHHHHHHHHHHhccc
Confidence            3688999999999999999999999999987666432233454455554  2    3456677777777654

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.97  E-value=0.0012  Score=47.26  Aligned_cols=33  Identities=18%  Similarity=0.162  Sum_probs=30.3

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .++|.+.||+|+|++|+.++++.|+||.+..+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~   34 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEID   34 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEe
Confidence            378999999999999999999999999887775

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.96  E-value=0.0068  Score=50.98  Aligned_cols=66  Identities=12%  Similarity=0.213  Sum_probs=46.5

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ..+.|.+.|+||++++|+++|++.|+||.+=....+.+.+..--++.+.  +    ++...+.|.+.|.+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~--~----~~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVP--G----DDRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEE--C----CHHHHHHHHHHHHHHh
Confidence            4689999999999999999999999999976665433444443333332  1    1223667777777654

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=96.94  E-value=0.054  Score=49.12  Aligned_cols=67  Identities=7%  Similarity=0.068  Sum_probs=46.8

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ...++|.++||||+.+.++++|+++|+||.+..-.+...++.+.-.+.+. +.+.      ....|+++|.+.-
T Consensus         7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~------~~~~L~~~L~~l~   74 (286)
T PRK13011          7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGL------DEDALRAGFAPIA   74 (286)
T ss_pred             eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCC------CHHHHHHHHHHHH
Confidence            46899999999999999999999999999987776433333444344444 3221      2456666666543

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=96.90  E-value=0.0034  Score=56.89  Aligned_cols=32  Identities=19%  Similarity=0.054  Sum_probs=28.7

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGR  221 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t  221 (261)
                      ++.|.|.||||+++.|++.|+++|+||.  .+++
T Consensus         9 vitv~G~DrpGIVa~VT~~La~~~vNI~--dls~   40 (286)
T PRK13011          9 VLTLSCPSAAGIVAAVTGFLAEHGCYIT--ELHS   40 (286)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhCCCCEE--Eeee
Confidence            6899999999999999999999999994  4543

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.90  E-value=0.011  Score=43.05  Aligned_cols=65  Identities=14%  Similarity=0.082  Sum_probs=47.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ..+.+...|+||.|++++++|...|+||.+=....+.+++..-=++.|.       ++...+.|.+.|.+..
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~-------~~~~i~ql~kQL~KL~   68 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVA-------SERPIDLLSSQLNKLV   68 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEEC-------CCchHHHHHHHHhcCc
Confidence            4689999999999999999999999999987777544554444444442       2345667777766543

>PRK11899 prephenate dehydratase; Provisional

Probab=96.84  E-value=0.0042  Score=56.10  Aligned_cols=55  Identities=7%  Similarity=0.066  Sum_probs=43.0

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP  245 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~  245 (261)
                      |.+=+...|+||.||+|-.+|++.|||+  .||..+-.+.+-++ |.||| |.+|..-.
T Consensus       195 tsl~~~~~~~pGaL~~vL~~Fa~~gINL--tkIeSRP~~~~~~~-Y~F~i-d~eg~~~d  249 (279)
T PRK11899        195 TTFVFRVRNIPAALYKALGGFATNGVNM--TKLESYMVGGSFTA-TQFYA-DIEGHPED  249 (279)
T ss_pred             EEEEEEeCCCCChHHHHHHHHHHcCCCe--eeEEeeecCCCCce-EEEEE-EEECCCCC
Confidence            4555566899999999999999999999  88965555566666 68999 66676443

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=96.81  E-value=0.0045  Score=52.79  Aligned_cols=34  Identities=12%  Similarity=0.086  Sum_probs=30.5

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEE
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  128 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~  128 (261)
                      ..++|++.||||+.++++++|+++|+||.+=+-.
T Consensus        96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~  129 (190)
T PRK11589         96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSR  129 (190)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEe
Confidence            6899999999999999999999999999754444

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.81  E-value=0.018  Score=39.63  Aligned_cols=62  Identities=8%  Similarity=0.111  Sum_probs=42.0

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHH
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  163 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~  163 (261)
                      .+.+.+.|+||++++|+.+|.++|++|......+...++.+.=.|.+..     .+ ...+.+.+.|.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~l~~~l~   63 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-----DD-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-----CH-HHHHHHHHHHh
Confidence            4678899999999999999999999999877663212334443444431     12 34555555554

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.80  E-value=0.0074  Score=53.64  Aligned_cols=37  Identities=14%  Similarity=0.243  Sum_probs=34.4

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEE
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR  129 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t  129 (261)
                      ..+++++.|+|+||+.++|++.|..+|+||.++.=++
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~   42 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD   42 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc
Confidence            5689999999999999999999999999999988873

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.78  E-value=0.021  Score=39.76  Aligned_cols=35  Identities=14%  Similarity=0.200  Sum_probs=31.1

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEE
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR  129 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t  129 (261)
                      ..+.|..+|+||-|+++++.|+++|+||.+.....
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~   36 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILE   36 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEE
Confidence            36788999999999999999999999999776664

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.77  E-value=0.019  Score=41.48  Aligned_cols=66  Identities=15%  Similarity=0.186  Sum_probs=42.8

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCC-CeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g-~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      +.+.+..+|+||-|+++..+|.++|+||.+-...  +.+ +...=.|+|+.++. .. +...+.+-+.|.+
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~--p~~~~~~~~~f~vd~~~~-~~-~~~~~~~l~~l~~   68 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESR--PSKGGLWEYVFFIDFEGH-IE-DPNVAEALEELKR   68 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEE--EcCCCCceEEEEEEEECC-CC-CHHHHHHHHHHHH
Confidence            4577788999999999999999999999865433  442 23334577763343 12 2344444444443

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=96.76  E-value=0.006  Score=40.90  Aligned_cols=33  Identities=18%  Similarity=0.183  Sum_probs=29.6

Q ss_pred             eEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865          189 VELSGKGRPLVFHDITLALKMLDICIFSAEIGR  221 (261)
Q Consensus       189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t  221 (261)
                      ++|...|+||.|.+|+.+|.+.|+||.+..+..
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~   33 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAE   33 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEE
Confidence            467889999999999999999999998888764

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.74  E-value=0.01  Score=40.70  Aligned_cols=33  Identities=24%  Similarity=0.272  Sum_probs=30.1

Q ss_pred             eEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865          189 VELSGKGRPLVFHDITLALKMLDICIFSAEIGR  221 (261)
Q Consensus       189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t  221 (261)
                      +.|.+.|+||+|++|+++|+++|++|.+.....
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~   34 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGR   34 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEec
Confidence            678999999999999999999999998888763

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=96.72  E-value=0.0086  Score=42.72  Aligned_cols=62  Identities=16%  Similarity=0.223  Sum_probs=40.0

Q ss_pred             EEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCC--ccchHHHHHHHHHH
Q 024865          191 LSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL--SVPRNKIEEGVWKL  256 (261)
Q Consensus       191 v~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~--~l~~~~~~~~l~~~  256 (261)
                      +.-.|+||-|++|..+|+++|+||  -+|.++-.....+. +.||| +-+|.  .-..+.+.+.|++.
T Consensus         4 ~~l~d~pG~L~~vL~~f~~~~vni--~~I~Srp~~~~~~~-~~f~i-d~~~~~~~~~~~~~l~~l~~~   67 (75)
T cd04880           4 FSLKNKPGALAKALKVFAERGINL--TKIESRPSRKGLWE-YEFFV-DFEGHIDDPDVKEALEELKRV   67 (75)
T ss_pred             EEeCCcCCHHHHHHHHHHHCCCCE--EEEEeeecCCCCce-EEEEE-EEECCCCCHHHHHHHHHHHHh
Confidence            445799999999999999999999  45543332222334 46888 44453  22234566666653

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=96.67  E-value=0.0095  Score=53.84  Aligned_cols=33  Identities=12%  Similarity=0.003  Sum_probs=29.4

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      ++.|.|+||||+++.|+..|+++|+||....=.
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~   34 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQH   34 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEE
Confidence            588999999999999999999999999665533

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.64  E-value=0.0096  Score=42.15  Aligned_cols=32  Identities=13%  Similarity=0.146  Sum_probs=28.5

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEI  219 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI  219 (261)
                      .+.|.+.||||+|++|+++++++|+||....-
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~   33 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQ   33 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEe
Confidence            37899999999999999999999999966554

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.61  E-value=0.015  Score=39.88  Aligned_cols=32  Identities=19%  Similarity=0.187  Sum_probs=28.9

Q ss_pred             eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      +.+.+.||||.|.+|+..|+++|++|.+....
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~   33 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVS   33 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEE
Confidence            57889999999999999999999999877654

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.60  E-value=0.02  Score=39.28  Aligned_cols=46  Identities=22%  Similarity=0.467  Sum_probs=34.6

Q ss_pred             EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEE
Q 024865           97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM  142 (261)
Q Consensus        97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V  142 (261)
                      +.+.+.|+||.+++++.+|+++|++|.+........++.+.=.|.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v   47 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV   47 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence            5788999999999999999999999998776632123344333444

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK04435 hypothetical protein; Provisional

Probab=96.57  E-value=0.027  Score=46.03  Aligned_cols=73  Identities=10%  Similarity=0.055  Sum_probs=50.2

Q ss_pred             EEcCCCCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHH
Q 024865           86 IDNSLSPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        86 i~~~~~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      |..........+.+.+.|+||+|++|..+|+++|+||..-...+ ..++.+.=.|.|. .+.     ...++.|.++|++
T Consensus        61 ~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i-~~~g~a~vs~tVevs~~-----~~~L~~Li~~L~~  134 (147)
T PRK04435         61 FDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSI-PLQGRANVTISIDTSSM-----EGDIDELLEKLRN  134 (147)
T ss_pred             ccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEc-CCCCEEEEEEEEEeCCh-----HHHHHHHHHHHHc
Confidence            44445567889999999999999999999999999999654432 2334665566665 211     1255666555543

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=96.56  E-value=0.027  Score=39.35  Aligned_cols=49  Identities=20%  Similarity=0.283  Sum_probs=37.0

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      +.+.+..+|+||.|++++.+|.++|+||.+....-...++...=+|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            5788999999999999999999999999976654221233554455553

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.55  E-value=0.011  Score=40.50  Aligned_cols=46  Identities=17%  Similarity=0.299  Sum_probs=36.4

Q ss_pred             EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEE
Q 024865           97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM  142 (261)
Q Consensus        97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V  142 (261)
                      +.|.+.|+||++++|+.+|+++|+||.+........++...=.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            6789999999999999999999999998888732112455555555

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=96.53  E-value=0.0076  Score=47.27  Aligned_cols=64  Identities=9%  Similarity=0.009  Sum_probs=44.0

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHH
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  255 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~  255 (261)
                      .+-++..|+||-|++|-..|+.+|||+  .+|..+..+.+-++ |.||| |-+|..-..+.+++.|+.
T Consensus        43 Slifsl~~~pGsL~~iL~~Fa~~gINL--t~IESRP~~~~~~e-Y~FfI-dieg~~~~~~~aL~~L~~  106 (115)
T cd04930          43 TLLFSLKEGFSSLSRILKVFETFEAKI--HHLESRPSRKEGGD-LEVLV-RCEVHRSDLLQLISSLRQ  106 (115)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCCE--EEEECCcCCCCCce-EEEEE-EEEeCHHHHHHHHHHHHH
Confidence            455555899999999999999999999  78875555555566 57988 444543222334444443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=96.50  E-value=0.0043  Score=42.95  Aligned_cols=32  Identities=9%  Similarity=0.085  Sum_probs=27.6

Q ss_pred             eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      +.|...|+||+|++|+.+|+++|+||.+....
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~   32 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHD   32 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEE
Confidence            45788999999999999999999999755543

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.49  E-value=0.0091  Score=41.92  Aligned_cols=32  Identities=31%  Similarity=0.216  Sum_probs=29.1

Q ss_pred             eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      +.|.+.||||+|.+|+++|.++|++|......
T Consensus         3 l~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~   34 (79)
T cd04881           3 LRLTVKDKPGVLAKITGILAEHGISIESVIQK   34 (79)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEc
Confidence            67889999999999999999999999877654

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.46  E-value=0.032  Score=37.16  Aligned_cols=46  Identities=15%  Similarity=0.208  Sum_probs=35.0

Q ss_pred             EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      |.|.+.|+||.++.++.+|.+++++|....+... .++.+.-.|.+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~-~~~~~~~~~~~~   46 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTD-DDGLATIRLTLE   46 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEEC-CCCEEEEEEEEE
Confidence            4678999999999999999999999998888732 223444444443

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.41  E-value=0.0047  Score=42.92  Aligned_cols=45  Identities=18%  Similarity=0.265  Sum_probs=35.1

Q ss_pred             EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      +.+.+.|+||++++++.+|+++|+||......  +.++.+.=.|.+.
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~--~~~~~a~~~~~~~   46 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQ--TRGEIGYVVIDID   46 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhcc--CCCCEEEEEEEcC
Confidence            56799999999999999999999999866444  4444665555554

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=96.40  E-value=0.014  Score=52.94  Aligned_cols=31  Identities=13%  Similarity=0.071  Sum_probs=28.5

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEE
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAE  218 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~Ak  218 (261)
                      +|.|.|.||||+++.|+..|+++|+||....
T Consensus        11 iitv~G~Dr~GIVA~Vs~~Lae~g~NI~dis   41 (289)
T PRK13010         11 VLTLACPSAPGIVAAVSGFLAEKGCYIVELT   41 (289)
T ss_pred             EEEEECCCCCCcHHHHHHHHHHCCCCEEecc
Confidence            7999999999999999999999999995544

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.39  E-value=0.024  Score=40.02  Aligned_cols=32  Identities=19%  Similarity=0.333  Sum_probs=28.8

Q ss_pred             EEEEecCCccHHHHHHHHHHHCCceEEEEEEE
Q 024865           97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  128 (261)
Q Consensus        97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~  128 (261)
                      +.|..+|+||-|++++.+|+++|+||.+-...
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~   33 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTA   33 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEec
Confidence            67889999999999999999999999976554

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=96.38  E-value=0.018  Score=52.24  Aligned_cols=33  Identities=21%  Similarity=0.076  Sum_probs=30.3

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      ++.|.|.||||++++|+++|+++|+||...+-.
T Consensus         8 vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~   40 (286)
T PRK06027          8 VLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQF   40 (286)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHCCCCEEEceeE
Confidence            689999999999999999999999999776655

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.37  E-value=0.0052  Score=42.83  Aligned_cols=33  Identities=18%  Similarity=0.137  Sum_probs=30.0

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.|...|+||.|++|+..|.+.|+||.+.-+.
T Consensus         3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~   35 (66)
T cd04908           3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIA   35 (66)
T ss_pred             EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEE
Confidence            477889999999999999999999999887765

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.37  E-value=0.024  Score=38.92  Aligned_cols=33  Identities=18%  Similarity=0.180  Sum_probs=29.5

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.+.+.|+||+|.+|+..|+++|++|.+....
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~   34 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVG   34 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEee
Confidence            477899999999999999999999999777654

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.35  E-value=0.012  Score=41.23  Aligned_cols=47  Identities=13%  Similarity=0.225  Sum_probs=37.0

Q ss_pred             EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      +.+..+|+||.+++++++|+++|+||.+........++.+.=+|.++
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~   48 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD   48 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence            46789999999999999999999999887765322455676666664

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.35  E-value=0.024  Score=38.60  Aligned_cols=32  Identities=22%  Similarity=0.331  Sum_probs=29.1

Q ss_pred             EEEEecCCccHHHHHHHHHHHCCceEEEEEEE
Q 024865           97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  128 (261)
Q Consensus        97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~  128 (261)
                      +.|..+|+||-|++++++|.++|+||.+...+
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~   33 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAF   33 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEE
Confidence            67888999999999999999999999877665

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=96.13  E-value=0.019  Score=51.69  Aligned_cols=66  Identities=12%  Similarity=0.069  Sum_probs=49.2

Q ss_pred             eeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc--hHHHHHHHHH
Q 024865          186 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP--RNKIEEGVWK  255 (261)
Q Consensus       186 ~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~--~~~~~~~l~~  255 (261)
                      .|.+-++..|+||-|+++-.+|+..|||+  -||..+-.+.+-|+ |.||| |-+|+.=+  .+...+.|++
T Consensus       194 kTsl~f~~~n~PGaL~~~L~~Fa~~gINl--TkIESRP~k~~~~~-Y~F~i-D~eg~~~~~~v~~AL~el~~  261 (279)
T COG0077         194 KTSLIFSVPNKPGALYKALGVFAKRGINL--TKIESRPLKTGLGE-YLFFI-DIEGHIDDPLVKEALEELKE  261 (279)
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCcce--eeEeecccCCCCee-EEEEE-EEecCcCcHhHHHHHHHHHh
Confidence            45677777899999999999999999999  89975556667777 57999 66666554  2344444443

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.11  E-value=0.039  Score=38.01  Aligned_cols=33  Identities=18%  Similarity=0.387  Sum_probs=30.4

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEE
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  128 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~  128 (261)
                      .+.+.++|+||.|++++..|++++++|.+....
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~   34 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQF   34 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEe
Confidence            578899999999999999999999999987776

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=96.05  E-value=0.048  Score=37.98  Aligned_cols=58  Identities=10%  Similarity=0.133  Sum_probs=38.9

Q ss_pred             CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865          103 DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus       103 DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      |+||.|.+|+++|.+.|+||.+=.+..+.+++..-=++.+.  |.    +...+.|...|.+..
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~--~~----~~~i~~l~~Ql~Kli   58 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS--GD----DREIEQLVKQLEKLI   58 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE--S-----CCHHHHHHHHHHCST
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe--eC----chhHHHHHHHHhccC
Confidence            78999999999999999999988887543554544444443  21    235566777776544

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=96.04  E-value=0.05  Score=55.38  Aligned_cols=77  Identities=17%  Similarity=0.133  Sum_probs=54.0

Q ss_pred             EEEEEcCCC-CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHH
Q 024865           83 SVTIDNSLS-PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSR  161 (261)
Q Consensus        83 ~V~i~~~~~-~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~  161 (261)
                      .|.|..... .-...|.|.+.||+|||++|+.+++..++||.+..+.+...++.+.-.|.|.     +.+...+..+...
T Consensus       654 ~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ie-----V~~~~~L~~l~~~  728 (743)
T PRK10872        654 DAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIE-----IYNLQVLGRVLGK  728 (743)
T ss_pred             EeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEE-----ECCHHHHHHHHHH
Confidence            356654322 2345889999999999999999999999999998887432144666666664     2334566666666


Q ss_pred             HHH
Q 024865          162 LWM  164 (261)
Q Consensus       162 L~~  164 (261)
                      |.+
T Consensus       729 L~~  731 (743)
T PRK10872        729 LNQ  731 (743)
T ss_pred             Hhc
Confidence            654

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.02  E-value=0.038  Score=38.41  Aligned_cols=47  Identities=6%  Similarity=-0.036  Sum_probs=39.5

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeC
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDE  238 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~  238 (261)
                      +|.|.++|+.||=.|+++++.++|++|..+.++  |.|.=  -.-+|.|.-
T Consensus         2 vitvnCPDktGLgcdlcr~il~fGl~i~rgd~s--TDGkW--Cyiv~wVv~   48 (69)
T cd04894           2 VITINCPDKTGLGCDLCRIILEFGLNITRGDDS--TDGRW--CYIVFWVVP   48 (69)
T ss_pred             EEEEeCCCccCcccHHHHHHHHhceEEEecccc--cCCcE--EEEEEEEec
Confidence            689999999999999999999999999999998  56653  323577754

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=96.00  E-value=0.075  Score=33.43  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=29.7

Q ss_pred             EEEEecCCccHHHHHHHHHHHCCceEEEEEEEE
Q 024865           97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR  129 (261)
Q Consensus        97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t  129 (261)
                      |.+.++|+||.|+++.++|.+++++|.......
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~   33 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRT   33 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEE
Confidence            468899999999999999999999999887763

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=95.99  E-value=0.025  Score=53.41  Aligned_cols=65  Identities=11%  Similarity=0.132  Sum_probs=46.0

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc--hHHHHHHHHH
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP--RNKIEEGVWK  255 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~--~~~~~~~l~~  255 (261)
                      +.+=+...|+||.|+++-.+|+..|||+  .||..+-.+.+-++ |.||| |.+|..-.  .+..++.|++
T Consensus       298 tsl~~~~~~~pGaL~~~L~~Fa~~giNL--tkIeSRP~~~~~~~-Y~Ffi-d~eg~~~d~~~~~aL~~l~~  364 (386)
T PRK10622        298 TTLLMATGQQAGALVEALLVLRNHNLIM--TKLESRPIHGNPWE-EMFYL-DVQANLRSAEMQKALKELGE  364 (386)
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHcCCCe--eEEEeeecCCCCce-EEEEE-EEeCCCCCHHHHHHHHHHHH
Confidence            3444566799999999999999999999  89965545555566 57999 66675443  1334444443

>PRK07334 threonine dehydratase; Provisional

Probab=95.94  E-value=0.053  Score=51.36  Aligned_cols=65  Identities=9%  Similarity=0.079  Sum_probs=48.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEee---CCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ---RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t---~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      +.|.|.+.||||+|++|+.+|++.++||.+....+..   .++.+.=.|.|.     +.+.++++.+.+.|++
T Consensus       327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~-----V~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIE-----TRDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEE-----eCCHHHHHHHHHHHHH
Confidence            7999999999999999999999999999988876320   233554445554     2345677777777765

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=95.88  E-value=0.12  Score=38.73  Aligned_cols=72  Identities=14%  Similarity=0.208  Sum_probs=49.4

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCe-EEEEEEEecCCCCCCChhhHHHHHHHHHHhhc
Q 024865           91 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  167 (261)
Q Consensus        91 ~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~-v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~  167 (261)
                      ..+.|.|.+..+|+||-|+++-.+|+.+|+|+.  +|.+...... -.=.|+|+-+|.  .+ ...+.+-+.|.+.+.
T Consensus        11 ~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt--~IeSRP~~~~~~~Y~FfVDieg~--~~-~~~~~~l~~L~~~~~   83 (90)
T cd04931          11 KNGVISLIFSLKEEVGALAKVLRLFEEKDINLT--HIESRPSRLNKDEYEFFINLDKK--SA-PALDPIIKSLRNDIG   83 (90)
T ss_pred             CCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEE--EEEeccCCCCCceEEEEEEEEcC--CC-HHHHHHHHHHHHHhC
Confidence            345577778889999999999999999999998  7776554322 223578874454  12 344555566666553

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.79  E-value=0.016  Score=41.70  Aligned_cols=70  Identities=16%  Similarity=0.295  Sum_probs=52.5

Q ss_pred             EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe--cCCCCCCChhhHHHHHHHHHHhh
Q 024865           97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ--ADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~--~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      |+++++-||-.|++++-+|..+++-|.+|.|.....+++-..+|.+-  ..++.+........+.+.+.+.|
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e~~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLEHDRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecCCCccccchHHHHHHHHHHHHHH
Confidence            67889999999999999999999999999997544566777777553  33444444444566777666655

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=95.70  E-value=0.065  Score=36.43  Aligned_cols=32  Identities=19%  Similarity=0.044  Sum_probs=28.5

Q ss_pred             eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      +.|.-.||||-|++++.+|+++|+||.+....
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~   33 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAF   33 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEE
Confidence            67788999999999999999999999776654

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=95.60  E-value=0.15  Score=36.11  Aligned_cols=64  Identities=13%  Similarity=0.182  Sum_probs=41.5

Q ss_pred             EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCC-CeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865           97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g-~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      +.+..+|+||-|+.+..+|.++|+||.  +|.+.... ....=.|+|+-+|..  ++...+.+.+.|.+
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~--~I~Srp~~~~~~~~~f~id~~~~~--~~~~~~~~l~~l~~   66 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLT--KIESRPSRKGLWEYEFFVDFEGHI--DDPDVKEALEELKR   66 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEE--EEEeeecCCCCceEEEEEEEECCC--CCHHHHHHHHHHHH
Confidence            345668999999999999999999999  45554432 233445677633421  12344555555544

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=95.59  E-value=0.082  Score=37.25  Aligned_cols=32  Identities=13%  Similarity=0.145  Sum_probs=28.3

Q ss_pred             eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      +.|.-.||||-|++++..|+++|.||.+--..
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~   33 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTA   33 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEec
Confidence            56788999999999999999999999766554

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=95.53  E-value=0.015  Score=48.97  Aligned_cols=33  Identities=15%  Similarity=0.081  Sum_probs=30.2

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.|.+.||||+|++|+..|++.|+||.+=..+
T Consensus         4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~   36 (174)
T CHL00100          4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVG   36 (174)
T ss_pred             EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEee
Confidence            689999999999999999999999999776664

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=95.46  E-value=0.03  Score=38.60  Aligned_cols=33  Identities=15%  Similarity=0.104  Sum_probs=29.3

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.+.+.|+||.|++|++.|++++++|.+....
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~   34 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQF   34 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEe
Confidence            367889999999999999999999999876654

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08577 hypothetical protein; Provisional

Probab=95.41  E-value=0.075  Score=42.64  Aligned_cols=34  Identities=29%  Similarity=0.276  Sum_probs=30.2

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      ..+.|.+.||||+|++|+++|+++|++|.+....
T Consensus        57 ~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~   90 (136)
T PRK08577         57 VEIELVVEDRPGVLAKITGLLAEHGVDILATECE   90 (136)
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEE
Confidence            3699999999999999999999999999766554

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=95.37  E-value=0.12  Score=52.44  Aligned_cols=75  Identities=9%  Similarity=0.130  Sum_probs=52.7

Q ss_pred             EEEEcCCC-CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHH
Q 024865           84 VTIDNSLS-PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL  162 (261)
Q Consensus        84 V~i~~~~~-~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L  162 (261)
                      |.|..... .-.+.|.|.+.||+|+|++|+.+++..++||.++...+ ..++.+.-.|.|.     +.+...+..|...|
T Consensus       615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ie-----V~~~~~L~~i~~~L  688 (702)
T PRK11092        615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLT-----ARDRVHLANIMRKI  688 (702)
T ss_pred             eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEE-----ECCHHHHHHHHHHH
Confidence            56654322 23458899999999999999999999999999998763 2334555556554     23345666666665


Q ss_pred             HH
Q 024865          163 WM  164 (261)
Q Consensus       163 ~~  164 (261)
                      .+
T Consensus       689 r~  690 (702)
T PRK11092        689 RV  690 (702)
T ss_pred             hC
Confidence            53

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=95.24  E-value=0.025  Score=41.06  Aligned_cols=33  Identities=18%  Similarity=0.118  Sum_probs=29.4

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.+...|+||+|++|+.+|+..|+||.+=..+
T Consensus         4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg   36 (76)
T PRK06737          4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLN   36 (76)
T ss_pred             EEEEEEecCCCHHHHHHHHHhccCcceEEEEec
Confidence            588999999999999999999999999765554

>PRK06635 aspartate kinase; Reviewed

Probab=95.21  E-value=0.25  Score=46.60  Aligned_cols=104  Identities=18%  Similarity=0.143  Sum_probs=63.0

Q ss_pred             eEEEEEE-ecCCccHHHHHHHHHHHCCceEEEEEEEEeeCC-CeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCce
Q 024865           94 HTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR  171 (261)
Q Consensus        94 ~t~l~V~-~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g-~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~~  171 (261)
                      ...|.|. ..++||.++++..+|.++|++|..  |.++... +..-=.|.|.        .+..+...+.|.+. .....
T Consensus       262 v~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~--is~s~~~~~~~~is~~v~--------~~~~~~a~~~L~~~-~~~~~  330 (404)
T PRK06635        262 EAKVTVVGVPDKPGIAAQIFGALAEANINVDM--IVQNVSEDGKTDITFTVP--------RDDLEKALELLEEV-KDEIG  330 (404)
T ss_pred             eEEEEECCCCCCccHHHHHHHHHHHcCCeEEE--EEecCCCCCceeEEEEEc--------HHHHHHHHHHHHHH-HHHcC
Confidence            4445444 478899999999999999999994  4432111 1233345553        12223333444441 11110


Q ss_pred             eeeecCCCCcceee---eeeeEEEe---CCcccHHHHHHHHHHhCCceEEE
Q 024865          172 VTVVSRGPDTELLV---ANPVELSG---KGRPLVFHDITLALKMLDICIFS  216 (261)
Q Consensus       172 ~~~~~~~~~~~v~~---~t~iev~~---~DRpGLL~dI~~~l~~~~l~I~~  216 (261)
                      .        ..+.+   -..+.|.+   .|+||.+++|.++|++.|+||..
T Consensus       331 ~--------~~i~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~  373 (404)
T PRK06635        331 A--------ESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQM  373 (404)
T ss_pred             c--------ceEEEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEE
Confidence            0        01111   12577766   58999999999999999999966

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=95.16  E-value=0.026  Score=39.30  Aligned_cols=33  Identities=24%  Similarity=0.173  Sum_probs=29.0

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.|...|+||.|++|++.|+++|++|......
T Consensus         3 ~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~   35 (69)
T cd04909           3 DLYVDVPDEPGVIAEVTQILGDAGISIKNIEIL   35 (69)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeE
Confidence            367788999999999999999999999876654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07334 threonine dehydratase; Provisional

Probab=95.15  E-value=0.089  Score=49.83  Aligned_cols=34  Identities=12%  Similarity=0.120  Sum_probs=31.2

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      ..|+|.+.||||+|++|+.++++.++||.+....
T Consensus       327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~  360 (403)
T PRK07334        327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQ  360 (403)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            4799999999999999999999999999877765

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=95.12  E-value=0.063  Score=37.42  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=27.5

Q ss_pred             EEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          190 ELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       190 ev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      -+...|+||.|++|++.|+++|+||.+-...
T Consensus         3 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~   33 (73)
T cd04902           3 VVRNTDRPGVIGKVGTILGEAGINIAGMQVG   33 (73)
T ss_pred             EEEeCCCCCHHHHHHHHHHHcCcChhheEee
Confidence            4678999999999999999999999777654

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=95.09  E-value=0.14  Score=40.18  Aligned_cols=47  Identities=17%  Similarity=0.195  Sum_probs=40.9

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEE
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM  142 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V  142 (261)
                      .++-|...|+||=|++|+.+|.++++|+-.+..+++.. +.++=+|.+
T Consensus        70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~  116 (142)
T COG4747          70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRV  116 (142)
T ss_pred             eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEh
Confidence            47889999999999999999999999999999997544 688777765

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=95.03  E-value=0.18  Score=51.06  Aligned_cols=76  Identities=13%  Similarity=0.058  Sum_probs=52.3

Q ss_pred             EEEEEcCCC-CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHH
Q 024865           83 SVTIDNSLS-PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSR  161 (261)
Q Consensus        83 ~V~i~~~~~-~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~  161 (261)
                      .|.|..... .-.+.|.|.+.||+|+|++|+.+++.+++||.+..+.+. .++.+.-.|.|.     +.+...+..|...
T Consensus       598 ~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ie-----V~~~~~L~~ii~~  671 (683)
T TIGR00691       598 EVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVE-----IKNYKHLLKIMLK  671 (683)
T ss_pred             EEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEE-----ECCHHHHHHHHHH
Confidence            356654322 234588999999999999999999999999999888742 233554445554     2334566666666


Q ss_pred             HHH
Q 024865          162 LWM  164 (261)
Q Consensus       162 L~~  164 (261)
                      |.+
T Consensus       672 L~~  674 (683)
T TIGR00691       672 IKT  674 (683)
T ss_pred             HhC
Confidence            553

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=95.03  E-value=0.11  Score=44.95  Aligned_cols=53  Identities=13%  Similarity=0.230  Sum_probs=45.8

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           91 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        91 ~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      .+....+.+.-.|+||...+++.+|.++++||...++.....|+.++-+..|+
T Consensus       145 ~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD  197 (208)
T TIGR00719       145 RGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEID  197 (208)
T ss_pred             cCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeC
Confidence            44566778888999999999999999999999999998766688898888875

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.02  E-value=0.049  Score=34.35  Aligned_cols=32  Identities=28%  Similarity=0.310  Sum_probs=29.0

Q ss_pred             eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      +.+.+.|+||++++|..+|+++|++|......
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~   32 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQR   32 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeE
Confidence            46889999999999999999999999888765

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=94.94  E-value=0.021  Score=39.50  Aligned_cols=32  Identities=22%  Similarity=0.139  Sum_probs=27.1

Q ss_pred             eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      +-+.+.||||+|.+|+.+|.+.|+||.+....
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~   33 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQ   33 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhcc
Confidence            44688999999999999999999999665443

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.92  E-value=0.22  Score=35.57  Aligned_cols=49  Identities=8%  Similarity=0.230  Sum_probs=36.4

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCC-eEEEEEEEecCC
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN-CEIDLFIMQADG  146 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~-~v~D~F~V~~~g  146 (261)
                      .+.+..+|+||-|+++-.+|+.+|+|+.  +|.+.+..+ .-.=.|+|+-+|
T Consensus         2 sl~f~l~~~pG~L~~vL~~f~~~~iNlt--~IeSRP~~~~~~~y~Ffvd~~~   51 (74)
T cd04904           2 SLIFSLKEEVGALARALKLFEEFGVNLT--HIESRPSRRNGSEYEFFVDCEV   51 (74)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCcEE--EEECCCCCCCCceEEEEEEEEc
Confidence            3455668999999999999999999999  787655432 233457887445

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=94.84  E-value=0.08  Score=47.21  Aligned_cols=62  Identities=16%  Similarity=0.142  Sum_probs=41.8

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEe---CCCCCccchHHHHHHHHH
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLD---EGDGLSVPRNKIEEGVWK  255 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~---~~~g~~l~~~~~~~~l~~  255 (261)
                      ++.++|+|+||+++.|+..|+++|.||..+.=-+...      -..|+..   ..++.+++++++++.+..
T Consensus         9 ~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~------~g~FFmR~~f~~~~~~~~~~~l~~~f~~   73 (287)
T COG0788           9 ILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPE------TGRFFMRVEFEGEGGPLDREALRAAFAP   73 (287)
T ss_pred             EEEEecCCCCCcHHHHHHHHHHcCCceeecccccccc------cCeEEEEEEEecCCCcccHHHHHHHHHH
Confidence            7899999999999999999999999996665431111      1135542   235555555555555443

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=94.78  E-value=0.042  Score=45.49  Aligned_cols=33  Identities=15%  Similarity=0.125  Sum_probs=30.2

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.|...|+||.|++|+..|++.|+||.+--++
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~   35 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVG   35 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEe
Confidence            588999999999999999999999999877665

acetohydroxyacid synthase is a synonym.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.77  E-value=0.84  Score=43.01  Aligned_cols=103  Identities=21%  Similarity=0.220  Sum_probs=64.9

Q ss_pred             CeEEEEEE---ecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865           93 GHTLVQIV---CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  169 (261)
Q Consensus        93 ~~t~l~V~---~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~  169 (261)
                      +...|.|.   ..++||.++++..+|.+++++|..  |.+ +..+.- =.|.|.        .+..++..+.|.+.+..-
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~--i~~-~~s~~~-Is~~V~--------~~d~~~a~~~L~~~~~~~  326 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDL--ISQ-TPSETS-ISLTVD--------ETDADEAVRALKDQSGAA  326 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEE--EEc-CCCCce-EEEEEe--------HHHHHHHHHHHHHHHHhc
Confidence            46678887   578899999999999999999973  332 112111 135553        122333444454433110


Q ss_pred             ceeeeecCCCCcceeee---eeeEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 024865          170 LRVTVVSRGPDTELLVA---NPVELSGK---GRPLVFHDITLALKMLDICIFS  216 (261)
Q Consensus       170 ~~~~~~~~~~~~~v~~~---t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~  216 (261)
                      . .        ..+...   ..|.|.+.   ++||+++++.++|.+.|+||..
T Consensus       327 ~-~--------~~i~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       327 G-L--------DRVEVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             C-C--------ceEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence            0 0        011111   25667774   7999999999999999999974

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=94.77  E-value=0.1  Score=38.59  Aligned_cols=33  Identities=18%  Similarity=0.118  Sum_probs=30.1

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.+...|+||+|++|+..|+..|+||.+=..+
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg   36 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVT   36 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEec
Confidence            588899999999999999999999999877765

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=94.73  E-value=0.17  Score=36.74  Aligned_cols=33  Identities=12%  Similarity=0.233  Sum_probs=30.3

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.+...++||.|++|+.+|+..|+||.+-..+
T Consensus         5 ~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~   37 (76)
T PRK11152          5 QLTIKARFRPEVLERVLRVVRHRGFQVCSMNMT   37 (76)
T ss_pred             EEEEEEECCccHHHHHHHHHhcCCeeeeeEEee
Confidence            588999999999999999999999999777766

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=94.47  E-value=0.052  Score=45.09  Aligned_cols=33  Identities=15%  Similarity=0.135  Sum_probs=30.1

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .++|...|+||.|++|+..|++.|+||.+--++
T Consensus         4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~   36 (161)
T PRK11895          4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVG   36 (161)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEee
Confidence            588999999999999999999999999876665

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=94.42  E-value=0.066  Score=35.59  Aligned_cols=32  Identities=25%  Similarity=0.343  Sum_probs=29.0

Q ss_pred             eEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          189 VELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      +.|.+.|+||.+.+|+..|.+++++|....+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~   32 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTR   32 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeE
Confidence            46788999999999999999999999888775

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK04435 hypothetical protein; Provisional

Probab=94.36  E-value=0.19  Score=40.95  Aligned_cols=32  Identities=9%  Similarity=0.018  Sum_probs=28.7

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEI  219 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI  219 (261)
                      .+.+...||||+|++|.++++++|+||..-.-
T Consensus        71 tL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q  102 (147)
T PRK04435         71 TLSLLLEDRSGTLSKVLNVIAEAGGNILTINQ  102 (147)
T ss_pred             EEEEEEecCCCHHHHHHHHHHHcCCCeEEEEE
Confidence            68899999999999999999999999965543

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=94.31  E-value=0.052  Score=41.15  Aligned_cols=33  Identities=12%  Similarity=0.015  Sum_probs=30.2

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .|.+...|+||+|++|+..|+..|+||.+=-.+
T Consensus        10 tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg   42 (96)
T PRK08178         10 ILELTVRNHPGVMSHVCGLFARRAFNVEGILCL   42 (96)
T ss_pred             EEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEe
Confidence            589999999999999999999999999776665

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=94.25  E-value=0.39  Score=34.52  Aligned_cols=50  Identities=12%  Similarity=0.170  Sum_probs=37.0

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCC-CeEEEEEEEecCCC
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG-NCEIDLFIMQADGK  147 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g-~~v~D~F~V~~~g~  147 (261)
                      .+.+..+|+||-|+++-.+|..+|+|+.  +|.+.+.. ....=.|+|+-+|.
T Consensus         2 sl~~~l~~~~g~L~~iL~~f~~~~inl~--~IeSRP~~~~~~~y~F~id~e~~   52 (74)
T cd04929           2 SVIFSLKNEVGGLAKALKLFQELGINVV--HIESRKSKRRSSEFEIFVDCECD   52 (74)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCEE--EEEeccCCCCCceEEEEEEEEcC
Confidence            3555669999999999999999999999  77766543 22334578874453

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=93.94  E-value=0.37  Score=33.47  Aligned_cols=32  Identities=25%  Similarity=0.286  Sum_probs=28.5

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEI  219 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI  219 (261)
                      .+.+.-.|+||.|.+|+..|.++|+||.+...
T Consensus         3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~   34 (72)
T cd04883           3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLV   34 (72)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEE
Confidence            46788899999999999999999999986654

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=93.91  E-value=0.41  Score=48.42  Aligned_cols=74  Identities=18%  Similarity=0.173  Sum_probs=50.9

Q ss_pred             EEEEEcCC-CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEE-EEEecCCCCCCChhhHHHHHH
Q 024865           83 SVTIDNSL-SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDL-FIMQADGKKIVDPSKQNGLSS  160 (261)
Q Consensus        83 ~V~i~~~~-~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~-F~V~~~g~~l~~~~~~~~l~~  160 (261)
                      .|.|..+. ..-...|.|.+.||+|||++|+.+|+..+.||.+....+  +++.+..+ |.+.     +.+-..+..|..
T Consensus       615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~--~~~~~~~~~~~i~-----v~n~~~L~~i~~  687 (701)
T COG0317         615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRS--DKDQFATMQFTIE-----VKNLNHLGRVLA  687 (701)
T ss_pred             EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccc--cCCceEEEEEEEE-----ECcHHHHHHHHH
Confidence            45666663 345679999999999999999999999999999887774  33344333 3333     223345555555


Q ss_pred             HHH
Q 024865          161 RLW  163 (261)
Q Consensus       161 ~L~  163 (261)
                      .|.
T Consensus       688 ~l~  690 (701)
T COG0317         688 RLK  690 (701)
T ss_pred             HHh
Confidence            544

>PLN02317 arogenate dehydratase

Probab=93.68  E-value=0.25  Score=46.55  Aligned_cols=65  Identities=12%  Similarity=0.147  Sum_probs=44.1

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccce--------------eEEEEEEEEeCCCCCccc--hHHHH
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDR--------------EWEVYRVLLDEGDGLSVP--RNKIE  250 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger--------------~~dv~~F~i~~~~g~~l~--~~~~~  250 (261)
                      |.|-+.-.|+||-|+++-.+|+..|||+  .||..+-...+              -++ |.||| |.+|..-.  .++.+
T Consensus       284 TSivfsl~~~pG~L~k~L~~Fa~~~INL--tkIESRP~~~~~~~~~~~~~~~~~~~~e-Y~FyV-D~eg~~~d~~~~~aL  359 (382)
T PLN02317        284 TSIVFSLEEGPGVLFKALAVFALRDINL--TKIESRPQRKRPLRVVDDSNSGTAKYFD-YLFYV-DFEASMADPRAQNAL  359 (382)
T ss_pred             EEEEEEcCCCCchHHHHHHHHHHCCCCE--EEEEeeecCCCCcccccccccccccccc-EEEEE-EEEcCcCCHHHHHHH
Confidence            4555666899999999999999999999  78853333222              256 57999 55665433  23344


Q ss_pred             HHHHH
Q 024865          251 EGVWK  255 (261)
Q Consensus       251 ~~l~~  255 (261)
                      +.|++
T Consensus       360 ~~L~~  364 (382)
T PLN02317        360 AHLQE  364 (382)
T ss_pred             HHHHH
Confidence            55544

>PRK11899 prephenate dehydratase; Provisional

Probab=93.63  E-value=0.37  Score=43.53  Aligned_cols=52  Identities=12%  Similarity=0.238  Sum_probs=41.5

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCe-EEEEEEEecCCC
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK  147 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~-v~D~F~V~~~g~  147 (261)
                      .|.|.+..+|+||.|+++-.+|+.+|+|+.  +|.+...++. -.=.|||+-+|.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLt--kIeSRP~~~~~~~Y~F~id~eg~  246 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMT--KLESYMVGGSFTATQFYADIEGH  246 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCee--eEEeeecCCCCceEEEEEEEECC
Confidence            577888889999999999999999999998  7887666433 333689985564

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=93.51  E-value=0.43  Score=33.20  Aligned_cols=45  Identities=16%  Similarity=0.182  Sum_probs=34.4

Q ss_pred             CCeEEEEEEec----CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           92 PGHTLVQIVCQ----DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        92 ~~~t~l~V~~~----DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      .+...|.|.++    |.||+.+++...|++.|++|..  |+ +    +.-|.|.|.
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~--is-S----~~~~~ilV~   52 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFM--IS-S----EISISILVK   52 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECE--EE-E----SSEEEEEEE
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEE--EE-E----eeeEEEEEe
Confidence            35678888887    7999999999999999999984  33 2    334667774

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=93.50  E-value=0.27  Score=50.20  Aligned_cols=37  Identities=16%  Similarity=0.153  Sum_probs=33.5

Q ss_pred             eeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          184 LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       184 ~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .|...|.|.+.||+|||++|+.++++.++||....+.
T Consensus       664 ~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~  700 (743)
T PRK10872        664 GYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASR  700 (743)
T ss_pred             eeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeE
Confidence            4566899999999999999999999999999888775

>PRK08210 aspartate kinase I; Reviewed

Probab=93.25  E-value=1.6  Score=41.33  Aligned_cols=99  Identities=19%  Similarity=0.214  Sum_probs=62.1

Q ss_pred             CeEEEEEEecCC-ccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCce
Q 024865           93 GHTLVQIVCQDH-KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR  171 (261)
Q Consensus        93 ~~t~l~V~~~Dr-pGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~~  171 (261)
                      +-..++|...+. ||.+++|..+|.++|+||..-  .++..  .  =+|.+.        .+..+++.+.|.+ +..  .
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i--~~~~~--~--is~~v~--------~~~~~~a~~~l~~-~~~--~  332 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFI--NIFPT--E--VVFTVS--------DEDSEKAKEILEN-LGL--K  332 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEE--EecCc--e--EEEEEc--------HHHHHHHHHHHHH-hCC--c
Confidence            456777766555 999999999999999999854  32111  1  135543        1223333333333 111  1


Q ss_pred             eeeecCCCCcceeeeeeeEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 024865          172 VTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFS  216 (261)
Q Consensus       172 ~~~~~~~~~~~v~~~t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~  216 (261)
                      +...     ..+   ..|.|.+.   ++||+++++..+|.+.|++|..
T Consensus       333 v~~~-----~~~---a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        333 PSVR-----ENC---AKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             EEEe-----CCc---EEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            1110     011   25667764   8999999999999999999964

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=93.11  E-value=0.068  Score=39.38  Aligned_cols=31  Identities=19%  Similarity=0.169  Sum_probs=27.5

Q ss_pred             eeEEEeCC-cccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKG-RPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~D-RpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      ++.|.+.| ++|.++.|+++|+++|+||  .+|.
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI--~~I~   32 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNI--DRIR   32 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCH--HHHH
Confidence            47889999 9999999999999999999  4554

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=93.09  E-value=0.41  Score=40.00  Aligned_cols=70  Identities=11%  Similarity=0.058  Sum_probs=44.6

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHH
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      ....+.|.+.||||++.+++..|..+|+||.+=.-.|...-+--.-.|+.+ .-+-|..  -....|++++.+
T Consensus        91 ~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~lPa~--~~i~~l~~~f~a  161 (176)
T COG2716          91 APVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARLPAN--LSISALRDAFEA  161 (176)
T ss_pred             ceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccCCCc--CcHHHHHHHHHH
Confidence            345889999999999999999999999999643332222222334456664 3333322  234556666554

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=92.99  E-value=0.66  Score=36.30  Aligned_cols=51  Identities=6%  Similarity=0.124  Sum_probs=38.5

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeE-EEEEEEecCC
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE-IDLFIMQADG  146 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v-~D~F~V~~~g  146 (261)
                      .|.+.+..+|+||-|+++-.+|..+|+|+.  +|.+.+..+.- .=.|+|+-+|
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt--~IESRP~~~~~~eY~FfIdieg   92 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIH--HLESRPSRKEGGDLEVLVRCEV   92 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEE--EEECCcCCCCCceEEEEEEEEe
Confidence            467777779999999999999999999999  78766653222 2247777334

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=92.86  E-value=0.36  Score=49.06  Aligned_cols=37  Identities=11%  Similarity=0.018  Sum_probs=33.7

Q ss_pred             eeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          184 LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       184 ~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .|...|.|.+.||+|+|.+|+.++++.++||.++...
T Consensus       624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~  660 (702)
T PRK11092        624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTE  660 (702)
T ss_pred             eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEE
Confidence            4566899999999999999999999999999888875

>PRK11898 prephenate dehydratase; Provisional

Probab=92.72  E-value=0.38  Score=43.50  Aligned_cols=64  Identities=9%  Similarity=0.000  Sum_probs=42.2

Q ss_pred             eeEEEe-CCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc--hHHHHHHHHH
Q 024865          188 PVELSG-KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP--RNKIEEGVWK  255 (261)
Q Consensus       188 ~iev~~-~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~--~~~~~~~l~~  255 (261)
                      .+-+.- .|+||-|+++-..|+++|||+  -+|..+-...+.++ |.||| |-+|..-.  .+.+++.|++
T Consensus       198 slif~l~~~~pGsL~~~L~~F~~~~INL--t~IeSRP~~~~~~~-y~F~v-d~eg~~~~~~~~~al~~L~~  264 (283)
T PRK11898        198 SLVLTLPNNLPGALYKALSEFAWRGINL--TRIESRPTKTGLGT-YFFFI-DVEGHIDDVLVAEALKELEA  264 (283)
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHCCCCe--eeEecccCCCCCcc-EEEEE-EEEccCCCHHHHHHHHHHHH
Confidence            344444 357999999999999999999  78864444344556 57999 55565432  2344455444

>PLN02551 aspartokinase

Probab=92.72  E-value=1.7  Score=42.75  Aligned_cols=109  Identities=17%  Similarity=0.233  Sum_probs=64.0

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHH---HHhh
Q 024865           93 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRL---WMEL  166 (261)
Q Consensus        93 ~~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L---~~~L  166 (261)
                      +.+.|.|.+.   +.+|.++++..+|.++|++|..  |.++ ..   -=+|.|..+.  +..   .+.+++.+   ...|
T Consensus       365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~--IssS-e~---sIs~~v~~~~--~~~---~~~i~~~l~~l~~el  433 (521)
T PLN02551        365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV--VATS-EV---SISLTLDPSK--LWS---RELIQQELDHLVEEL  433 (521)
T ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEE--Eecc-CC---EEEEEEehhH--hhh---hhhHHHHHHHHHHHh
Confidence            4577788654   6899999999999999999983  4432 21   1235554211  111   11222222   2223


Q ss_pred             cCCceeeeecCCCCcceeeeeeeEEEe--CCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          167 LQPLRVTVVSRGPDTELLVANPVELSG--KGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       167 ~~~~~~~~~~~~~~~~v~~~t~iev~~--~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .....+...     ..+   ..|.|.+  ..+||+++++..+|.+.|+||+.-..+
T Consensus       434 ~~~~~V~v~-----~~v---AiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqg  481 (521)
T PLN02551        434 EKIAVVNLL-----QGR---SIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQG  481 (521)
T ss_pred             hcCCeEEEe-----CCE---EEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEec
Confidence            211111110     111   2455554  368999999999999999999765554

>PRK06291 aspartate kinase; Provisional

Probab=92.70  E-value=2.7  Score=40.61  Aligned_cols=105  Identities=19%  Similarity=0.140  Sum_probs=65.9

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865           93 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  169 (261)
Q Consensus        93 ~~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~  169 (261)
                      +.+.|.|.+.   +.||+++++..+|.++|++|..  |..++..  .-=+|.|..        ...+...+.|.+.+...
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~m--Isq~sse--~sIsf~V~~--------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIM--ISQGSSE--SNISLVVDE--------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEE--EEecCCC--ceEEEEEeH--------HHHHHHHHHHHHHHHHh
Confidence            4667788754   7899999999999999999984  3321111  111344431        22233344455444321


Q ss_pred             ceeeeecCCCCcceeee---eeeEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 024865          170 LRVTVVSRGPDTELLVA---NPVELSGK---GRPLVFHDITLALKMLDICIFSAE  218 (261)
Q Consensus       170 ~~~~~~~~~~~~~v~~~---t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~Ak  218 (261)
                      .         ...+.+.   ..|.|.+.   ++||++.++..+|.+.|++|+.--
T Consensus       388 ~---------~~~i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~is  433 (465)
T PRK06291        388 L---------VRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMIS  433 (465)
T ss_pred             c---------CcceEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEE
Confidence            1         0012221   25777775   799999999999999999996443

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=92.53  E-value=0.55  Score=39.19  Aligned_cols=47  Identities=13%  Similarity=0.268  Sum_probs=38.4

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEE
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM  142 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V  142 (261)
                      -+.+.+.++||.|.+++++++.+|.||..|+-+.-.+|+.+.=-|.+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEi   50 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEI   50 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEe
Confidence            36788999999999999999999999999999865567555433344

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.51  E-value=0.39  Score=48.75  Aligned_cols=38  Identities=21%  Similarity=0.168  Sum_probs=34.0

Q ss_pred             eeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865          184 LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR  221 (261)
Q Consensus       184 ~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t  221 (261)
                      .|...|.|.+.||+|+|++|+.++++.++||.+....+
T Consensus       608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~  645 (683)
T TIGR00691       608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKT  645 (683)
T ss_pred             eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEE
Confidence            45568999999999999999999999999998888763

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=92.51  E-value=0.92  Score=31.55  Aligned_cols=60  Identities=17%  Similarity=0.257  Sum_probs=37.5

Q ss_pred             EEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEE-EecCCCCCCChhhHHHHHHHHHH
Q 024865           97 VQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFI-MQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        97 l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~-V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      +.|.-+||||=|.+++.++.. |.||..-.=.  ..+-....+++ +.-     .+++..+++.++|.+
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~--~~~~~~~~v~v~ie~-----~~~~~~~~i~~~L~~   61 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYR--NQGGDEARVLVGIQV-----PDREDLAELKERLEA   61 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEE--cCCCCceEEEEEEEe-----CCHHHHHHHHHHHHH
Confidence            357789999999999999999 9999854332  21211222332 221     124566677777654

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=92.18  E-value=0.8  Score=41.35  Aligned_cols=54  Identities=17%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCe-EEEEEEEecCCCC
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGKK  148 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~-v~D~F~V~~~g~~  148 (261)
                      ..|.+.+..+|+||-|+++-++|+.+|+|.-  ||.+...+.. -.=.|||+-.|..
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlT--kIESRP~k~~~~~Y~F~iD~eg~~  247 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLT--KIESRPLKTGLGEYLFFIDIEGHI  247 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCccee--eEeecccCCCCeeEEEEEEEecCc
Confidence            4889999999999999999999999999998  8887665533 3345888854543

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=91.79  E-value=0.37  Score=41.60  Aligned_cols=41  Identities=17%  Similarity=0.152  Sum_probs=35.4

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeecccee
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDRE  228 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~  228 (261)
                      .+=+.-.||||.+..|+..|.++|+||....+++...|..|
T Consensus       150 ~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~A  190 (208)
T TIGR00719       150 AILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIA  190 (208)
T ss_pred             EEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEE
Confidence            45667799999999999999999999999998876666664

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form

Probab=91.68  E-value=0.52  Score=45.13  Aligned_cols=65  Identities=15%  Similarity=0.089  Sum_probs=45.2

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc-hHHHHHHHHHH
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP-RNKIEEGVWKL  256 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~-~~~~~~~l~~~  256 (261)
                      .|-++..|+||-|++|-.+|+++|||+  .+|..+-...+-++ +.||| +-+|..-. .+++.+.|++.
T Consensus        18 SLiFsL~d~pGaL~~vL~vFa~~gINL--thIESRPsk~~~~e-Y~FFV-D~eg~~~~~v~~aL~~Lk~~   83 (436)
T TIGR01268        18 SLIFSLKEEAGALAETLKLFQAHDVNL--THIESRPSKTHPGE-YEFFV-EFDEASDRKLEGVIEHLRQK   83 (436)
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHCCCCe--eEEecccCCCCCcc-EEEEE-EEecCccHHHHHHHHHHHHh
Confidence            455666899999999999999999999  78864444334445 46999 44465422 34566666653

The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=91.53  E-value=0.56  Score=32.54  Aligned_cols=27  Identities=26%  Similarity=0.295  Sum_probs=23.3

Q ss_pred             CcccHHHHHHHHHHhCCceEEEEEEee
Q 024865          195 GRPLVFHDITLALKMLDICIFSAEIGR  221 (261)
Q Consensus       195 DRpGLL~dI~~~l~~~~l~I~~AkI~t  221 (261)
                      |+||.|..|+.+|...|+||.+-..+.
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~   27 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGP   27 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeee
Confidence            789999999999999999997777763

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=91.45  E-value=0.53  Score=47.60  Aligned_cols=37  Identities=14%  Similarity=0.227  Sum_probs=33.1

Q ss_pred             eeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          184 LVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       184 ~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .|...|.|.+.||+|||.+|+++|+..++||.+....
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~  661 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTR  661 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeecc
Confidence            4566899999999999999999999999999777765

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.36  E-value=0.44  Score=33.13  Aligned_cols=31  Identities=29%  Similarity=0.275  Sum_probs=25.4

Q ss_pred             eeEEEeC----CcccHHHHHHHHHHhCCceEEEEE
Q 024865          188 PVELSGK----GRPLVFHDITLALKMLDICIFSAE  218 (261)
Q Consensus       188 ~iev~~~----DRpGLL~dI~~~l~~~~l~I~~Ak  218 (261)
                      .|.|.+.    |.||+++.|+.+|++.||+|+.-.
T Consensus         8 ~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    8 KISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             EEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             EEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            4556555    899999999999999999997766

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=91.13  E-value=0.15  Score=37.54  Aligned_cols=29  Identities=14%  Similarity=0.292  Sum_probs=26.7

Q ss_pred             EEEEEecC-CccHHHHHHHHHHHCCceEEE
Q 024865           96 LVQIVCQD-HKGLLYDIMRTLKDYNIQVSY  124 (261)
Q Consensus        96 ~l~V~~~D-rpGLla~I~~vl~~~~l~I~~  124 (261)
                      .|+|.++| +.|.+++++++|+.+|+||.+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~   30 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDR   30 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHH
Confidence            37899999 999999999999999999973

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK06382 threonine dehydratase; Provisional

Probab=90.87  E-value=1.7  Score=41.29  Aligned_cols=68  Identities=10%  Similarity=0.088  Sum_probs=45.8

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEe---eCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865           92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRR---QRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~---t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      ...+.+.|..+|+||-|++++.+|.++|+||.+-.....   ..-+.+.=+|.|...     +++..+.|.+.|.+
T Consensus       328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-----~~~~~~~v~~~L~~  398 (406)
T PRK06382        328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-----GQDHLDRILNALRE  398 (406)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            467899999999999999999999999999986543210   112245545666411     13444566666654

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=90.37  E-value=0.71  Score=45.38  Aligned_cols=52  Identities=17%  Similarity=0.309  Sum_probs=42.6

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      +.+..+.+...|+||..+.++.+|..+++||...++.....|+.++-++.++
T Consensus       450 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D  501 (526)
T PRK13581        450 PEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVD  501 (526)
T ss_pred             CCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECC
Confidence            3555667777999999999999999999999988887544677888777764

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=89.89  E-value=0.52  Score=46.32  Aligned_cols=52  Identities=17%  Similarity=0.340  Sum_probs=43.0

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      ..+..+.+.-.|+||....++.+|.++++||...++.....|+.++-++.++
T Consensus       449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D  500 (525)
T TIGR01327       449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLD  500 (525)
T ss_pred             cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcC
Confidence            3445666677999999999999999999999988887656678888777774

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.70  E-value=0.53  Score=44.82  Aligned_cols=49  Identities=12%  Similarity=0.215  Sum_probs=42.3

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      ....|.|.-+|+||.+++|+.+|+++|+||..-+..  ..|+++.-+|-++
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~--~~~~~A~~iie~D  385 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQ--TDGEIGYVVIDVD  385 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheec--cCCCEEEEEEEeC
Confidence            556788899999999999999999999999877776  6777888887664

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=89.51  E-value=0.83  Score=44.00  Aligned_cols=65  Identities=9%  Similarity=-0.048  Sum_probs=43.7

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHHH
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVWK  255 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~~  255 (261)
                      .|=++-.|+||-|+++-++|+++|||+  -+|..+-...+-++.+.||| +-+|..-..+++.+.|++
T Consensus        33 SLIFsL~d~pGaL~~vL~vFa~~gINL--ThIESRPsk~~~~e~Y~FfV-D~Eg~~~~l~~aL~~Lk~   97 (464)
T TIGR01270        33 SIIFSLSNVVGDLSKAIAIFQDRHINI--LHLESRDSKDGTSKTMDVLV-DVELFHYGLQEAMDLLKS   97 (464)
T ss_pred             EEEEECCCCchHHHHHHHHHHHCCCCE--EEEECCcCCCCCCccEEEEE-EEEcCHHHHHHHHHHHHH
Confidence            455556899999999999999999999  78864444334444245888 444554223445555554

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>PRK07431 aspartate kinase; Provisional

Probab=89.26  E-value=5.5  Score=39.62  Aligned_cols=110  Identities=21%  Similarity=0.180  Sum_probs=64.3

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHHCCceEEEEEEEEee-CCC--eEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC
Q 024865           93 GHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ-RGN--CEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  168 (261)
Q Consensus        93 ~~t~l~V~-~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t-~g~--~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~  168 (261)
                      +...|+|. .++.+|+++++...|.++|++|..  |.++. .++  ..-=.|.+.. .    +-..+.++.+.|...+..
T Consensus       438 ~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~--i~~~~~~~~~~~~~isf~v~~-~----~~~~~~~~l~~l~~~~~~  510 (587)
T PRK07431        438 NQAQLAIRNVPDRPGMAASIFGALAEANISVDM--IVQSQRCRSDGTRDISFTVPK-E----DREAAQKVLRELAKQLPG  510 (587)
T ss_pred             CEEEEEECCCCCCccHHHHHHHHHHHcCCeEEE--EEecCCCCCCCceeEEEEEcH-H----HHHHHHHHHHHHHHhcCC
Confidence            45556554 478899999999999999999983  44211 111  1222344431 1    111223333333322211


Q ss_pred             CceeeeecCCCCcceeeeeeeEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 024865          169 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE  218 (261)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~Ak  218 (261)
                       ..+....     .+   ..+.|.+.   .+||+++++.++|.+.|++++..-
T Consensus       511 -~~i~~~~-----~v---a~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        511 -AEVEDGP-----AI---AKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             -ceEEEeC-----Ce---EEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence             1111100     11   26788875   899999999999999999995544

>PRK09034 aspartate kinase; Reviewed

Probab=89.20  E-value=7.8  Score=37.38  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=64.4

Q ss_pred             CeEEEEEE---ecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865           93 GHTLVQIV---CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  169 (261)
Q Consensus        93 ~~t~l~V~---~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~  169 (261)
                      +.+.|+|.   ..++||.+++|..+|.++|++|..  |.   .++ .-=+|.|.. .. +. ...+..+.+.|...+.. 
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~--i~---ss~-~sis~~v~~-~~-~~-~a~~~~l~~el~~~~~~-  376 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEH--MP---SGI-DDLSIIIRE-RQ-LT-PKKEDEILAEIKQELNP-  376 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEE--Ec---CCC-cEEEEEEeH-HH-hh-HHHHHHHHHHHHHhhCC-
Confidence            45666666   367899999999999999999985  32   221 112466641 11 10 11113343444333311 


Q ss_pred             ceeeeecCCCCcceeeeeeeEEEe---CCcccHHHHHHHHHHhCCceEEEEEE
Q 024865          170 LRVTVVSRGPDTELLVANPVELSG---KGRPLVFHDITLALKMLDICIFSAEI  219 (261)
Q Consensus       170 ~~~~~~~~~~~~~v~~~t~iev~~---~DRpGLL~dI~~~l~~~~l~I~~AkI  219 (261)
                      ..+...     ..+   ..|.|.+   .++||++++|..+|.+.|++|..-.-
T Consensus       377 ~~I~~~-----~~v---a~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq  421 (454)
T PRK09034        377 DELEIE-----HDL---AIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ  421 (454)
T ss_pred             ceEEEe-----CCE---EEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence            111110     011   2566755   37999999999999999999965543

>PRK09181 aspartate kinase; Validated

Probab=88.94  E-value=7.2  Score=37.95  Aligned_cols=104  Identities=14%  Similarity=0.113  Sum_probs=65.6

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865           93 GHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  169 (261)
Q Consensus        93 ~~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~  169 (261)
                      +.+.|.|...   +.+|+.++|..+|.++|++|.  -+.++ .   .-=+|.|..+      ....+++.+.|.+.+...
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss-~---~sis~~v~~~------~~~~~~~~~~L~~~~~~~  395 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATN-A---NTITHYLWGS------LKTLKRVIAELEKRYPNA  395 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEec-C---cEEEEEEcCC------hHHHHHHHHHHHHhcCCc
Confidence            5677777543   789999999999999999998  34422 1   1123444321      123455555565544321


Q ss_pred             ceeeeecCCCCcceeeeeeeEEEeCC--cccHHHHHHHHHHhCCceEEEEE
Q 024865          170 LRVTVVSRGPDTELLVANPVELSGKG--RPLVFHDITLALKMLDICIFSAE  218 (261)
Q Consensus       170 ~~~~~~~~~~~~~v~~~t~iev~~~D--RpGLL~dI~~~l~~~~l~I~~Ak  218 (261)
                       .+.. .     .+   .+|.|.+..  +||+.+++..+|.+.||||..--
T Consensus       396 -~i~~-~-----~~---a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~  436 (475)
T PRK09181        396 -EVTV-R-----KV---AIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH  436 (475)
T ss_pred             -eEEE-C-----Cc---eEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence             1111 0     11   256666643  89999999999999999995433

>PRK06545 prephenate dehydrogenase; Validated

Probab=88.79  E-value=1.7  Score=40.52  Aligned_cols=38  Identities=16%  Similarity=0.226  Sum_probs=35.4

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEE
Q 024865           92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR  129 (261)
Q Consensus        92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t  129 (261)
                      +.++.|.|.-+|+||-+++++..|...|+||.+-+|.-
T Consensus       288 ~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~  325 (359)
T PRK06545        288 PSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE  325 (359)
T ss_pred             CcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence            46789999999999999999999999999999999974

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=88.69  E-value=8.8  Score=39.92  Aligned_cols=110  Identities=16%  Similarity=0.111  Sum_probs=65.9

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC
Q 024865           92 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  168 (261)
Q Consensus        92 ~~~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~  168 (261)
                      .+.+.|.|.+.   ++||.++++..+|.++|++|....-.   ..+. -=+|.|..        ...+...+.|.+.+..
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqs---sSe~-sIsf~V~~--------~d~~~av~~L~~~f~~  380 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQS---SSEY-SISFCVPQ--------SDAAKAKRALEEEFAL  380 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcC---CCCc-eEEEEEeH--------HHHHHHHHHHHHHHHH
Confidence            45778888754   78999999999999999999743221   1211 11355541        1222233334333311


Q ss_pred             CceeeeecCCCCcceeee---eeeEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 024865          169 PLRVTVVSRGPDTELLVA---NPVELSGK---GRPLVFHDITLALKMLDICIFSAE  218 (261)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~---t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~Ak  218 (261)
                      +..    .. ....+.+.   ..|.|.+.   ++||++.++..+|.+.|++|+.-.
T Consensus       381 el~----~~-~~~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        381 ELK----EG-LLEPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             Hhc----cC-CcceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence            110    00 00112221   26777775   789999999999999999996543

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=88.36  E-value=4.8  Score=29.30  Aligned_cols=61  Identities=10%  Similarity=0.080  Sum_probs=35.8

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHH
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      .+.|.-+|+||=|++++.+|.  +.||....-.. ...+.+.-.+.+. ++|     ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~-~~~~~~~v~i~ie~~~~-----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRY-ADEKDAHIFVGVSVANG-----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEc-cCCCeeEEEEEEEeCCc-----HHHHHHHHHHHHH
Confidence            467888999999999999999  55555322221 1112333334343 221     3455666666654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09084 aspartate kinase III; Validated

Probab=87.90  E-value=12  Score=36.02  Aligned_cols=106  Identities=21%  Similarity=0.213  Sum_probs=61.3

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC
Q 024865           92 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  168 (261)
Q Consensus        92 ~~~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~  168 (261)
                      .+.+.|+|.+.   +.+|.++++..+|.++|++|..  |.++ .   .-=+|.|.. ... . ......+.+++.+.+..
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~--I~ss-e---~sIs~~i~~-~~~-~-~~~~~~~~~~l~~el~~  374 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDL--ITTS-E---VSVSLTLDT-TGS-T-STGDTLLTQALLTELSQ  374 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEE--Eecc-C---cEEEEEEec-hhh-h-hhhhHHHHHHHHHHHhc
Confidence            35677888654   6899999999999999999983  4422 1   112355542 111 0 01112233334433432


Q ss_pred             CceeeeecCCCCcceeeeeeeEEEeC---CcccHHHHHHHHHHhCCceE
Q 024865          169 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICI  214 (261)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~t~iev~~~---DRpGLL~dI~~~l~~~~l~I  214 (261)
                      ...+...     ..+   ..|.|.+.   ++||+++++..+|.+.++.+
T Consensus       375 ~~~i~~~-----~~v---a~IsvvG~gm~~~~gv~arif~aL~~~nI~~  415 (448)
T PRK09084        375 LCRVEVE-----EGL---ALVALIGNNLSKACGVAKRVFGVLEPFNIRM  415 (448)
T ss_pred             CCeEEEE-----CCe---EEEEEECCCcccCcChHHHHHHHHHhCCeEE
Confidence            1111110     011   26777775   79999999999998754443

>PRK08818 prephenate dehydrogenase; Provisional

Probab=87.88  E-value=1.4  Score=41.37  Aligned_cols=48  Identities=17%  Similarity=0.247  Sum_probs=36.9

Q ss_pred             CeEEEEEEec-CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           93 GHTLVQIVCQ-DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        93 ~~t~l~V~~~-DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      ..+.+.+.-+ |+||-|+++..+|..+|+||.+=.+.....+++.   |+|+
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~---f~i~  342 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH---FRIG  342 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE---EEEE
Confidence            4677777886 9999999999999999999996666422234333   8887

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=87.81  E-value=5.5  Score=28.44  Aligned_cols=23  Identities=26%  Similarity=0.384  Sum_probs=21.7

Q ss_pred             ecCCccHHHHHHHHHHHCCceEE
Q 024865          101 CQDHKGLLYDIMRTLKDYNIQVS  123 (261)
Q Consensus       101 ~~DrpGLla~I~~vl~~~~l~I~  123 (261)
                      .++.||++++|..+|+++|+||-
T Consensus        11 ~~~~~g~~~~IF~~La~~~I~VD   33 (75)
T cd04932          11 MLHAQGFLAKVFGILAKHNISVD   33 (75)
T ss_pred             CCCCcCHHHHHHHHHHHcCCcEE
Confidence            47889999999999999999998

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=87.69  E-value=2.5  Score=35.10  Aligned_cols=67  Identities=7%  Similarity=0.114  Sum_probs=47.2

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhc
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  167 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~  167 (261)
                      -.+.+.-.|.||.|+++++.|++.|+||.+=-+..+.+.+..--++.+.  |    ++...+++.+.|.+..+
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~--g----~~~~~EQi~kQL~kLid   71 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS--G----DEQVLEQIIKQLNKLID   71 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc--C----CcchHHHHHHHHHhhcc
Confidence            4677888999999999999999999999977666543443333333332  2    23456777777777664

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=87.12  E-value=5.5  Score=37.25  Aligned_cols=65  Identities=9%  Similarity=0.158  Sum_probs=42.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEE---EeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS---RRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~---t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      ..+.|..+|+||-|++++..+.++|.||.+-.-.   ....-+.+.=.+.|...     +++..+.|.+.|.+
T Consensus       306 ~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~-----~~~~~~~i~~~L~~  373 (380)
T TIGR01127       306 VRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR-----GKEHLDEILKILRD  373 (380)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC-----CHHHHHHHHHHHHH
Confidence            3889999999999999999999999999854322   11111244444444411     23455666666654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>TIGR00657 asp_kinases aspartate kinase

Probab=86.94  E-value=21  Score=34.19  Aligned_cols=104  Identities=21%  Similarity=0.175  Sum_probs=59.8

Q ss_pred             CeEEEEEEecC-C-ccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCc
Q 024865           93 GHTLVQIVCQD-H-KGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPL  170 (261)
Q Consensus        93 ~~t~l~V~~~D-r-pGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~  170 (261)
                      +...|.|...+ . +|.++++..+|.++|++|..-  .+.+ .+.- =.|.|..        ...+...+.|........
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i--~q~~-se~s-Is~~I~~--------~~~~~a~~~L~~~~~~~~  368 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLI--TQSS-SETS-ISFTVDK--------EDADQAKTLLKSELNLSA  368 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEE--EecC-CCce-EEEEEEH--------HHHHHHHHHHHHHHHhcC
Confidence            45566666533 2 799999999999999999843  2211 2111 1344431        111222222322111100


Q ss_pred             eeeeecCCCCcceeee---eeeEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 024865          171 RVTVVSRGPDTELLVA---NPVELSG---KGRPLVFHDITLALKMLDICIFSA  217 (261)
Q Consensus       171 ~~~~~~~~~~~~v~~~---t~iev~~---~DRpGLL~dI~~~l~~~~l~I~~A  217 (261)
                               ...|.+.   ..+.|.+   .++||++++|..+|++.|++|..-
T Consensus       369 ---------~~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i  412 (441)
T TIGR00657       369 ---------LSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMI  412 (441)
T ss_pred             ---------cceEEEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEE
Confidence                     0011111   2577755   378999999999999999999544

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK08198 threonine dehydratase; Provisional

Probab=86.82  E-value=6.9  Score=36.95  Aligned_cols=37  Identities=11%  Similarity=0.113  Sum_probs=32.1

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEE
Q 024865           92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFS  128 (261)
Q Consensus        92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~  128 (261)
                      .....+.|.-+|+||-|+++..++.++|.||.+-...
T Consensus       325 gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        325 GRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            3456899999999999999999999999999976543

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=86.43  E-value=4.2  Score=38.49  Aligned_cols=53  Identities=13%  Similarity=0.287  Sum_probs=41.3

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCe-EEEEEEEecCCC
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK  147 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~-v~D~F~V~~~g~  147 (261)
                      ..|.+.+..+|+||.|+++-++|+..|+|+.  +|.+...++. -.=.|||+-.|.
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLt--kIeSRP~~~~~~~Y~Ffid~eg~  349 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMT--KLESRPIHGNPWEEMFYLDVQAN  349 (386)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCee--EEEeeecCCCCceEEEEEEEeCC
Confidence            3677777889999999999999999999998  7877654322 344588885554

>PRK07431 aspartate kinase; Provisional

Probab=86.13  E-value=8.4  Score=38.31  Aligned_cols=98  Identities=19%  Similarity=0.243  Sum_probs=59.2

Q ss_pred             ecCCccHHHHHHHHHHHCCceEEEEEEEEee-CCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCceeeeecCCC
Q 024865          101 CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ-RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTVVSRGP  179 (261)
Q Consensus       101 ~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t-~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~  179 (261)
                      ..+.+|++++|...|.++|+||..  |.++. .++..-=.|.|..        .......+.|.+ +.....        
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~--i~qs~~~~~~~~isf~i~~--------~d~~~~~~~l~~-l~~~~~--------  338 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDL--IIQSIHEGNSNDIAFTVAE--------NELKKAEAVAEA-IAPALG--------  338 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEE--EEeccCCCCCccEEEEEeH--------HHHHHHHHHHHH-HHHHcC--------
Confidence            478999999999999999999984  33211 2212222466641        112222222222 211110        


Q ss_pred             Ccceeee---eeeEEEeC---CcccHHHHHHHHHHhCCceEEEE
Q 024865          180 DTELLVA---NPVELSGK---GRPLVFHDITLALKMLDICIFSA  217 (261)
Q Consensus       180 ~~~v~~~---t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~A  217 (261)
                      ..++.+.   ..|.|.+.   ++||+++++..+|++.|++|..-
T Consensus       339 ~~~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i  382 (587)
T PRK07431        339 GAEVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMI  382 (587)
T ss_pred             CCcEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEE
Confidence            0012221   26777775   89999999999999999999643

>PRK08818 prephenate dehydrogenase; Provisional

Probab=85.39  E-value=1.9  Score=40.51  Aligned_cols=45  Identities=9%  Similarity=0.058  Sum_probs=31.7

Q ss_pred             eeEEEeC-CcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEe
Q 024865          188 PVELSGK-GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLD  237 (261)
Q Consensus       188 ~iev~~~-DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~  237 (261)
                      .+-+.-. |+||-|++|+..|+++||||.+=.|.    -.+-+. |.|||.
T Consensus       297 ~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~----~~r~~~-y~f~i~  342 (370)
T PRK08818        297 TLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSS----RTPAGE-LHFRIG  342 (370)
T ss_pred             EEEEECCCCCCChHHHHHHHHHHcCcccceEEEe----cccCce-EEEEEE
Confidence            4445554 99999999999999999999555542    112223 458884

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=84.66  E-value=7.6  Score=27.42  Aligned_cols=56  Identities=14%  Similarity=0.165  Sum_probs=34.0

Q ss_pred             cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865          102 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus       102 ~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      .+.||+++++..+|.++|+++..  +.  +.+  .-=+|.|. ......+......|.+.|.+
T Consensus        12 ~~~~g~~~~if~~L~~~~I~v~~--i~--~s~--~~is~~v~-~~~~~~~~~~~~~~~~~l~~   67 (75)
T cd04912          12 LGAHGFLAKVFEIFAKHGLSVDL--IS--TSE--VSVSLTLD-PTKNLSDQLLLDALVKDLSQ   67 (75)
T ss_pred             CCCccHHHHHHHHHHHcCCeEEE--EE--cCC--cEEEEEEE-chhhccchHHHHHHHHHHHh
Confidence            67899999999999999999963  33  222  11124443 23222222355566666655

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric

Probab=84.09  E-value=4.7  Score=38.98  Aligned_cols=55  Identities=9%  Similarity=0.090  Sum_probs=41.5

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEE--EEEEecCCC
Q 024865           91 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEID--LFIMQADGK  147 (261)
Q Consensus        91 ~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D--~F~V~~~g~  147 (261)
                      ..+.|.|.+..+|+||-|+++-.+|..+|+|+.  +|.+......-.+  .|+|+-+|.
T Consensus        28 ~~~ktSLIFsL~d~pGaL~~vL~vFa~~gINLT--hIESRPsk~~~~e~Y~FfVD~Eg~   84 (464)
T TIGR01270        28 GVQRLSIIFSLSNVVGDLSKAIAIFQDRHINIL--HLESRDSKDGTSKTMDVLVDVELF   84 (464)
T ss_pred             CCceEEEEEECCCCchHHHHHHHHHHHCCCCEE--EEECCcCCCCCCccEEEEEEEEcC
Confidence            445677888889999999999999999999999  7876655433333  577873343

This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=83.99  E-value=28  Score=33.63  Aligned_cols=107  Identities=21%  Similarity=0.215  Sum_probs=63.1

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC
Q 024865           92 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  168 (261)
Q Consensus        92 ~~~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~  168 (261)
                      .+.+.+.|...   ..+|.+++|..+|.++|+||..  |.+. .++.- =+|.|..        .......+.|.+....
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~--I~q~-~~~~~-i~~~v~~--------~~~~~a~~~l~~~~~~  372 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDL--ITQS-ISEVS-ISFTVPE--------SDAPRALRALLEEKLE  372 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEE--EEec-cCCCe-EEEEEch--------hhHHHHHHHHHHHHhh
Confidence            45667777653   3459999999999999999973  4321 11111 3465541        1112223333333322


Q ss_pred             Cc-eeeeecCCCCcceeeeeeeEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 024865          169 PL-RVTVVSRGPDTELLVANPVELSG---KGRPLVFHDITLALKMLDICIFSAE  218 (261)
Q Consensus       169 ~~-~~~~~~~~~~~~v~~~t~iev~~---~DRpGLL~dI~~~l~~~~l~I~~Ak  218 (261)
                      .. .+....     .+   ..|.+.+   ...||..+.+.++|++.|+||....
T Consensus       373 ~~~~v~~~~-----~~---a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is  418 (447)
T COG0527         373 LLAEVEVEE-----GL---ALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS  418 (447)
T ss_pred             hcceEEeeC-----Ce---eEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE
Confidence            21 111100     11   1466665   4789999999999999999996555

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=83.57  E-value=8  Score=27.56  Aligned_cols=55  Identities=15%  Similarity=0.151  Sum_probs=35.2

Q ss_pred             cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCC-CCChhhHHHHHHHHHH
Q 024865          102 QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKK-IVDPSKQNGLSSRLWM  164 (261)
Q Consensus       102 ~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~-l~~~~~~~~l~~~L~~  164 (261)
                      ++.||+++++.++|+++|+||-  -|.  + ++ .-=+|.|. .... +.+ +..++|.+.|.+
T Consensus        12 ~~~~g~~~~IF~~La~~~I~vD--mI~--~-s~-~~isftv~-~~~~~~~~-~~~~~l~~el~~   67 (75)
T cd04935          12 WQQVGFLADVFAPFKKHGVSVD--LVS--T-SE-TNVTVSLD-PDPNGLDP-DVLDALLDDLNQ   67 (75)
T ss_pred             CCccCHHHHHHHHHHHcCCcEE--EEE--e-CC-CEEEEEEe-Ccccccch-HHHHHHHHHHHh
Confidence            6789999999999999999998  354  2 32 11234443 2221 222 356677777665

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=83.48  E-value=3.4  Score=34.56  Aligned_cols=40  Identities=18%  Similarity=0.128  Sum_probs=32.6

Q ss_pred             eEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeecccee
Q 024865          189 VELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDRE  228 (261)
Q Consensus       189 iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~  228 (261)
                      +.+.+.++||.|.+++-.+++.|.||..|.---...|+.+
T Consensus         5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~   44 (218)
T COG1707           5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKA   44 (218)
T ss_pred             eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceE
Confidence            6788999999999999999999999988876422345553

>PRK08198 threonine dehydratase; Provisional

Probab=82.88  E-value=5.2  Score=37.78  Aligned_cols=33  Identities=9%  Similarity=0.125  Sum_probs=28.8

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.|.-.||||-|.++...+.++|.||..-...
T Consensus       329 ~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        329 KLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             EEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            688889999999999999999999999655443

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=82.45  E-value=2.9  Score=34.67  Aligned_cols=45  Identities=11%  Similarity=0.174  Sum_probs=33.3

Q ss_pred             CeEEEEEEe--cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEE
Q 024865           93 GHTLVQIVC--QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLF  140 (261)
Q Consensus        93 ~~t~l~V~~--~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F  140 (261)
                      |+-+++|+.  .+.||.++.+++.++++|++|.  +++. .+=+...+.+
T Consensus        92 G~gViei~~~~~~~pgi~A~V~~~iak~gi~Ir--qi~~-~dpe~~~e~~  138 (167)
T COG2150          92 GLGVIEIYPEDARYPGILAGVASLIAKRGISIR--QIIS-EDPELQEEPK  138 (167)
T ss_pred             CCeEEEEEeccCCCccHHHHHHHHHHHcCceEE--EEec-CCcccCCCce
Confidence            556777776  6679999999999999999999  4552 2333455554

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=82.42  E-value=2.3  Score=35.18  Aligned_cols=32  Identities=13%  Similarity=0.082  Sum_probs=27.6

Q ss_pred             eeEEEe--CCcccHHHHHHHHHHhCCceEEEEEE
Q 024865          188 PVELSG--KGRPLVFHDITLALKMLDICIFSAEI  219 (261)
Q Consensus       188 ~iev~~--~DRpGLL~dI~~~l~~~~l~I~~AkI  219 (261)
                      ++||.+  .+.||.|+.|+..++++|++|..+--
T Consensus        95 Viei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~  128 (167)
T COG2150          95 VIEIYPEDARYPGILAGVASLIAKRGISIRQIIS  128 (167)
T ss_pred             EEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence            677776  56799999999999999999977654

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=81.89  E-value=17  Score=38.05  Aligned_cols=103  Identities=18%  Similarity=0.215  Sum_probs=60.6

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865           93 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  169 (261)
Q Consensus        93 ~~t~l~V~~---~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~  169 (261)
                      +.+.|+|.+   .+.+|.+++|..+|.++|++|.  -|.+  ..  .-=+|.+.. .......+.++.+.+.|.    ..
T Consensus       321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd--~I~s--se--~sis~~i~~-~~~~~~~~~~~~l~~~l~----~~  389 (861)
T PRK08961        321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVD--LISS--SE--TNVTVSLDP-SENLVNTDVLAALSADLS----QI  389 (861)
T ss_pred             CEEEEEEecCCccccccHHHHHHHHHHHcCCeEE--EEEc--CC--CEEEEEEcc-ccccchHHHHHHHHHHHh----hc
Confidence            567788853   4689999999999999999997  3442  22  111244432 111101122333333332    11


Q ss_pred             ceeeeecCCCCcceeeeeeeEEEeC---CcccHHHHHHHHHHhCCceE
Q 024865          170 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICI  214 (261)
Q Consensus       170 ~~~~~~~~~~~~~v~~~t~iev~~~---DRpGLL~dI~~~l~~~~l~I  214 (261)
                      ..+...     ..+   ..|.|.+.   .+||+++++..+|.+.|+++
T Consensus       390 ~~i~~~-----~~v---a~ISvVG~gm~~~~gv~arif~aL~~~~I~~  429 (861)
T PRK08961        390 CRVKII-----VPC---AAVSLVGRGMRSLLHKLGPAWATFGAERVHL  429 (861)
T ss_pred             CcEEEe-----CCe---EEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence            111111     011   26777775   89999999999999987666

>PRK06349 homoserine dehydrogenase; Provisional

Probab=81.55  E-value=8.1  Score=36.93  Aligned_cols=49  Identities=14%  Similarity=0.240  Sum_probs=36.4

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      ...-|.+...|+||.|++|+++|.++++||.+-.-.. +.+ ....+++++
T Consensus       347 ~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~-~~~-~~~~ivivT  395 (426)
T PRK06349        347 SKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKG-AGG-EGAEIVIVT  395 (426)
T ss_pred             eeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEecc-CCC-CceeEEEEE
Confidence            4568888899999999999999999999998543331 223 344555665

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=80.73  E-value=3  Score=39.69  Aligned_cols=58  Identities=14%  Similarity=0.092  Sum_probs=39.8

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHH
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVW  254 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~  254 (261)
                      .|-+.-.|+||.++.|+..|+++|+||..-+..  ..|+.+     +++-+.|+ ++. +.+.+.|+
T Consensus       340 rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~--~~~~~A-----~~iie~D~-~~~-~~~~~~i~  397 (409)
T PRK11790        340 RLLHIHENRPGVLAAINQIFAEQGINIAAQYLQ--TDGEIG-----YVVIDVDA-DYA-EEALDALK  397 (409)
T ss_pred             eEEEEeCCCCCHHHHHHHHHHhcCCCHHHheec--cCCCEE-----EEEEEeCC-CCc-HHHHHHHH
Confidence            566788999999999999999999999666654  334332     44546555 333 23555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.77
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.72
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.63
2nyi_A	195	Unknown protein; protein structure initiative, PSI	98.45
2f06_A	144	Conserved hypothetical protein; structural genomic	98.25
1u8s_A	192	Glycine cleavage system transcriptional repressor,	98.21
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.18
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	98.11
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.74
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	97.7
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.69
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.52
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	97.4
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.38
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.35
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.18
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.17
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.11
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.09
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.84
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.77
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	96.73
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.52
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.45
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.25
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	96.22
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.14
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	96.05
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.04
3luy_A	329	Probable chorismate mutase; structural genomics, A	96.01
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	95.94
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	95.9
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	95.89
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	95.89
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	95.88
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.84
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	95.83
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	95.59
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	95.5
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	95.06
2f06_A	144	Conserved hypothetical protein; structural genomic	94.23
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	93.94
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	93.87
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	93.55
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	93.28
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	92.4
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	92.09
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	91.9
3luy_A	329	Probable chorismate mutase; structural genomics, A	90.82
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	90.53
1phz_A	429	Protein (phenylalanine hydroxylase); aromatic amin	90.36
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	89.89
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	87.54
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	86.9
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	86.66
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	85.43
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	85.27
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	83.48
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	82.75
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	81.37

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.77  E-value=4.8e-18  Score=143.88  Aligned_cols=137  Identities=15%  Similarity=0.145  Sum_probs=98.4

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC-cee
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP-LRV  172 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~-~~~  172 (261)
                      ..+|+|+|+||||||++|+++|+++|+||++|++++. .|+.++ .|.|..++.  ..+.+++.|++.|..++... ...
T Consensus         5 ~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~-~~~f~m-~~~v~~~~~--~~~~~~~~l~~~L~~~~~~~~~~~   80 (195)
T 2nyi_A            5 SFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACL-GGDFAM-IVLVSLNAK--DGKLIQSALESALPGFQISTRRAS   80 (195)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE-TTEEEE-EEEEEESSS--SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred             EEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEE-CCeEEE-EEEEEecCc--cchhHHHHHHHHHHHHHHhcCCeE
Confidence            5789999999999999999999999999999999973 565666 777762221  22345677777776554321 111


Q ss_pred             eeecCCCCcceeeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeecc--ceeEEEEEEEEeCC
Q 024865          173 TVVSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIG--DREWEVYRVLLDEG  239 (261)
Q Consensus       173 ~~~~~~~~~~v~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~g--er~~dv~~F~i~~~  239 (261)
                      ....+ +...-.-.++|+|.|+|||||+++|+++|+++|+||..+++.  +.+  ++++++  ||+...
T Consensus        81 ~~~~~-~~~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~--t~~~~~~~~~~--F~m~~~  144 (195)
T 2nyi_A           81 SVAER-HVSPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETE--TLPAPFAGFTL--FRMGSR  144 (195)
T ss_dssp             CC-----CCTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE--EEECSSTTCEE--EEEEEE
T ss_pred             EEEeC-CcCCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceee--ecccccCCCCe--EEEEEE
Confidence            11000 000111235899999999999999999999999999999998  454  666676  887554

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.72  E-value=4e-16  Score=131.31  Aligned_cols=134  Identities=14%  Similarity=0.098  Sum_probs=95.7

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC-Ccee
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ-PLRV  172 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~-~~~~  172 (261)
                      ..+|+|+|+||||++++|+++|+++|+||.++++++ +.| ...-.|.|..+      +..++.|++.|.+.... ....
T Consensus         6 ~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~-~~~-~f~~~~~v~~~------~~~~~~l~~~L~~~~~~~~~~~   77 (192)
T 1u8s_A            6 HLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAM-FGK-EFTLLMLISGS------PSNITRVETTLPLLGQQHDLIT   77 (192)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEE-ETT-EEEEEEEEEEC------HHHHHHHHHHHHHHHHHHTCEE
T ss_pred             EEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeee-cCC-ceEEEEEEecC------CCCHHHHHHHHHHHHHhcCCEE
Confidence            578999999999999999999999999999999996 355 44447777521      24677888888876532 1222


Q ss_pred             ee--ecCCCCcceeeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccc----eeEEEEEEEEeCC
Q 024865          173 TV--VSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGD----REWEVYRVLLDEG  239 (261)
Q Consensus       173 ~~--~~~~~~~~v~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ge----r~~dv~~F~i~~~  239 (261)
                      ..  ..+.++..-....+|+|.+.||||+|++|+.+|+++|+||..+++.  +.++    +.+++  ||+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~--t~~~~~~~~~~~~--F~~~~~  146 (192)
T 1u8s_A           78 MMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQ--TISKDKLHSEQNQ--FHIAIS  146 (192)
T ss_dssp             EEEEECCCCCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEE--EEC--------CE--EEEEEE
T ss_pred             EEEeCCCCCCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhh--cccCCccCCCCCE--EEEEEE
Confidence            21  1111111111235899999999999999999999999999999987  5553    56666  777543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.63  E-value=1.5e-06  Score=80.54  Aligned_cols=121  Identities=9%  Similarity=0.038  Sum_probs=80.3

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcC-Cc
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ-PL  170 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~-~~  170 (261)
                      ...+|+|.|+||||+.+.|+++|+++|+||.+..-+  ..++++.-...+. +.+.     ...+.|+++|...-.. ..
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~--~~~~~f~~~~~~~~~~~~-----~~~~~l~~~l~~~~~~~~~   83 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQV--VIRHRLTLGVLVCCPADV-----ADGPALRHDVEAAIRKVGL   83 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEE--EETTEEEEEEEEEECHHH-----HTSHHHHHHHHHHHHHTTC
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeE--EECCEeEEEEEEEecCCc-----CCHHHHHHHHHHHHHHcCe
Confidence            456899999999999999999999999999998887  4444654444443 2110     0225666666543221 12


Q ss_pred             eeeeecCCCCcce--eeeeeeEEEeCC-cccHHHHHHHHHHhCCceEEEEEEe
Q 024865          171 RVTVVSRGPDTEL--LVANPVELSGKG-RPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       171 ~~~~~~~~~~~~v--~~~t~iev~~~D-RpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+...+....++.  .-+..+++.+.| +||++.+|+.+++++|+||...+--
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~  136 (415)
T 3p96_A           84 DVSIERSDDVPIIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGV  136 (415)
T ss_dssp             EEEEEECSSSCSSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             EEEEEECCcccccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeec
Confidence            2222111001111  112479999999 9999999999999999999655544

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=98.45  E-value=2.1e-07  Score=78.17  Aligned_cols=71  Identities=11%  Similarity=0.000  Sum_probs=55.1

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCC--CeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865           91 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRG--NCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        91 ~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g--~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ....+.|+|.|+||||++++|+++|+++|+||.+++++  +.+  ++..|.|++. .-+.+  ++.. +.|+++|....
T Consensus        90 ~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~--t~~~~~~~~~~F~m~~~~~~~--~~~~-~~l~~~l~~~a  163 (195)
T 2nyi_A           90 DTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETE--TLPAPFAGFTLFRMGSRVAFP--FPLY-QEVVTALSRVE  163 (195)
T ss_dssp             TEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE--EEECSSTTCEEEEEEEEEEEE--GGGH-HHHHHHHHHHH
T ss_pred             CCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceee--ecccccCCCCeEEEEEEEEcC--CCcc-HHHHHHHHHHH
Confidence            34678999999999999999999999999999999999  454  5567888885 32222  2334 77888877654

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.25  E-value=4.6e-05  Score=60.34  Aligned_cols=99  Identities=15%  Similarity=0.130  Sum_probs=65.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCceeee
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLRVTV  174 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~~~~~  174 (261)
                      ..++|..+|+||.++++++.|++.|+||..-.+..+.+  ..  ++.++     ..++   +..++.|.+.  + ..   
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~--~~--~~~~~-----~~d~---~~a~~~L~~~--G-~~---   68 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENAD--FG--ILRGI-----VSDP---DKAYKALKDN--H-FA---   68 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSS--CE--EEEEE-----ESCH---HHHHHHHHHT--T-CC---
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCC--CC--EEEEE-----eCCH---HHHHHHHHHc--C-Ce---
Confidence            57888999999999999999999999998654442122  11  12222     1222   2333444431  1 11   


Q ss_pred             ecCCCCcceeeeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865          175 VSRGPDTELLVANPVELSGKGRPLVFHDITLALKMLDICIFSAEI  219 (261)
Q Consensus       175 ~~~~~~~~v~~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI  219 (261)
                              +....++-+.-.|+||.+++|+++|++.|+||.+...
T Consensus        69 --------v~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~  105 (144)
T 2f06_A           69 --------VNITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYS  105 (144)
T ss_dssp             --------EEEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             --------EeeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEE
Confidence                    1112356667789999999999999999999955443

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=98.21  E-value=3.3e-06  Score=70.38  Aligned_cols=72  Identities=11%  Similarity=0.021  Sum_probs=53.0

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCC----eEEEEEEEe-cCCCCCCChhhHHHHHHHHHHh
Q 024865           91 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGN----CEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWME  165 (261)
Q Consensus        91 ~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~----~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~  165 (261)
                      +...+.|.|.++||||++++|+++|.++|+||.+++..  +.++    +..|.|++. .-+.+  ++...+.|+++|...
T Consensus        90 ~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~--t~~~~~~~~~~~~F~~~~~~~~~--~~~~~~~l~~~l~~~  165 (192)
T 1u8s_A           90 HAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQ--TISKDKLHSEQNQFHIAISARVD--SGCNLMQLQEEFDAL  165 (192)
T ss_dssp             CSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEE--EEC--------CEEEEEEEEEEC--TTSCHHHHHHHHHHH
T ss_pred             CCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhh--cccCCccCCCCCEEEEEEEEeCC--CCCCHHHHHHHHHHH
Confidence            34678999999999999999999999999999999998  5552    577888885 32211  223457788887765


Q ss_pred             h
Q 024865          166 L  166 (261)
Q Consensus       166 L  166 (261)
                      .
T Consensus       166 ~  166 (192)
T 1u8s_A          166 C  166 (192)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.18  E-value=1.3e-05  Score=58.22  Aligned_cols=65  Identities=6%  Similarity=0.086  Sum_probs=49.0

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhh
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ...|.|.++||||++++|+++|+++|+||.+....+. . +.+.-.+.+. ++      ...++.|.++|.+.-
T Consensus         5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~-~-~~~~~~i~v~~~~------~~~l~~l~~~L~~~~   70 (91)
T 1zpv_A            5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVL-D-EYFTMMAVVSSDE------KQDFTYLRNEFEAFG   70 (91)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEE-T-TEEEEEEEEEESS------CCCHHHHHHHHHHHH
T ss_pred             eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEE-c-CEEEEEEEEEeCC------CCCHHHHHHHHHHHH
Confidence            4689999999999999999999999999999888743 3 4665556554 32      134567777776543

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=98.11  E-value=1.8e-05  Score=56.86  Aligned_cols=63  Identities=13%  Similarity=0.194  Sum_probs=46.9

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHH
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLW  163 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~  163 (261)
                      .+.|.|.+.||||+|++|+++|+++|+||.+..+.  +.++.+...|.+..     .+.+.++++.++|.
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~--~~~~~~~~~i~v~~-----~~~~~l~~l~~~L~   67 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLN--AKDGIFTCNLMIFV-----KNTDKLTTLMDKLR   67 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEE--ECSSEEEEEEEEEE-----SSHHHHHHHHHHHT
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEE--EcCCEEEEEEEEEE-----CCHHHHHHHHHHHh
Confidence            46789999999999999999999999999998887  34436666666641     12345555555544

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.74  E-value=0.00043  Score=56.30  Aligned_cols=106  Identities=18%  Similarity=0.121  Sum_probs=68.7

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCCce
Q 024865           93 GHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQPLR  171 (261)
Q Consensus        93 ~~t~l~V~-~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~~~  171 (261)
                      +.+.|.|. .+|+||.+++|..+|+++|+||..--...+.+| ..-=+|.|..        ...++..+.|.+.. .+..
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g-~~~isf~v~~--------~~~~~a~~~l~~~~-~~l~   93 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEG-TTDFSFTVPR--------GDYKQTLEILSERQ-DSIG   93 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----C-EEEEEEEECG--------GGHHHHHHHHHHSS-TTTT
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCC-eeEEEEEEec--------hHHHHHHHHHHHHH-HHcC
Confidence            57888888 599999999999999999999984322211223 3333466641        12233334444422 2211


Q ss_pred             eeeecCCCCcceee---eeeeEEEeCC---cccHHHHHHHHHHhCCceEEE
Q 024865          172 VTVVSRGPDTELLV---ANPVELSGKG---RPLVFHDITLALKMLDICIFS  216 (261)
Q Consensus       172 ~~~~~~~~~~~v~~---~t~iev~~~D---RpGLL~dI~~~l~~~~l~I~~  216 (261)
                      .        ..+..   ...+.|.+.+   +||+++++..+|.+.|+||..
T Consensus        94 ~--------~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~  136 (167)
T 2re1_A           94 A--------ASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM  136 (167)
T ss_dssp             C--------SEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE
T ss_pred             C--------ceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE
Confidence            1        01111   1378888876   999999999999999999977

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=97.70  E-value=0.00032  Score=50.75  Aligned_cols=33  Identities=12%  Similarity=0.144  Sum_probs=30.6

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.|.+.||||+|++|+.+|+++|+||......
T Consensus         7 ~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~   39 (91)
T 1zpv_A            7 IITVVGKDKSGIVAGVSGKIAELGLNIDDISQT   39 (91)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeE
Confidence            689999999999999999999999999877765

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.69  E-value=0.00027  Score=50.56  Aligned_cols=37  Identities=14%  Similarity=0.176  Sum_probs=33.1

Q ss_pred             eeeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865          185 VANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGR  221 (261)
Q Consensus       185 ~~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t  221 (261)
                      |...+.|.+.||||+|++|+.+|++.|+||.+..+.+
T Consensus         4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~   40 (88)
T 2ko1_A            4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNA   40 (88)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEE
T ss_pred             EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEE
Confidence            3457899999999999999999999999999888863

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.52  E-value=0.00039  Score=56.78  Aligned_cols=66  Identities=8%  Similarity=0.117  Sum_probs=51.8

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ..+.|.+.|+||+|++|+++|++.|+||.+..+..+.+.+...=+|.|.  +    ++..++.|.+.|.+..
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~--~----d~~~leqI~kqL~Kl~   69 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--G----DEKVLEQIEKQLHKLV   69 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--S----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe--c----cHHHHHHHHHHHcCCC
Confidence            5789999999999999999999999999998887544434666667765  2    2467778888877643

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=97.40  E-value=0.00062  Score=55.60  Aligned_cols=66  Identities=6%  Similarity=0.114  Sum_probs=51.7

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ..+.|.+.|+||+|++|+++|++.|+||.+..+..+.+.+...=+|.|.  +    ++..++.|.+.|.+..
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~--~----d~~~leql~kQL~Kl~   70 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN--G----PDEIVEQITKQLNKLI   70 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE--E----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe--c----cHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999998887544444666667765  1    2456777877777644

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.38  E-value=0.003  Score=51.82  Aligned_cols=106  Identities=20%  Similarity=0.158  Sum_probs=67.7

Q ss_pred             CCeEEEEE-EecCCccHHHHHHHHHHHCCceEEEEEEEEeeC---CCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhc
Q 024865           92 PGHTLVQI-VCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR---GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  167 (261)
Q Consensus        92 ~~~t~l~V-~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~---g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~  167 (261)
                      .+.+.|+| ..+|+||.+++|...|.++|+||..  |.+++.   ++...=.|.+..        ...++..+.|.+ +.
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~--i~~s~~~~~~~~~~isf~v~~--------~d~~~a~~~l~~-~~   81 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDM--VLQNVSSVEDGTTDITFTCPR--------SDGRRAMEILKK-LQ   81 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCE--EEECCCCTTTCEEEEEEEEEH--------HHHHHHHHHHHT-TT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEE--EEcCCCCCCCCceEEEEEEcc--------ccHHHHHHHHHH-HH
Confidence            36788888 4699999999999999999999984  322111   112212366641        222333344444 22


Q ss_pred             CCceeeeecCCCCcceeee---eeeEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 024865          168 QPLRVTVVSRGPDTELLVA---NPVELSGK---GRPLVFHDITLALKMLDICIFS  216 (261)
Q Consensus       168 ~~~~~~~~~~~~~~~v~~~---t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~  216 (261)
                      .+...        ..+.+.   ..|.|.+.   ++||+++++.++|++.||||..
T Consensus        82 ~~~~~--------~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~  128 (178)
T 2dtj_A           82 VQGNW--------TNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL  128 (178)
T ss_dssp             TTTTC--------SEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCE
T ss_pred             HhcCC--------CeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEE
Confidence            21110        012221   36777775   8999999999999999999977

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.35  E-value=0.0014  Score=58.09  Aligned_cols=66  Identities=9%  Similarity=0.117  Sum_probs=47.3

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHH
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      ...|+|.|+||||+.++|++.|+++|+||.+..-++....+++.-...+. +.+.     ...+.|+++|..
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~~-----~~~~~L~~~f~~   72 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAKV-----IPLASLRTGFGV   72 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSCC-----CCHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCCC-----CCHHHHHHHHHH
Confidence            46899999999999999999999999999999887433444554443444 2221     134566666654

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.18  E-value=0.0023  Score=57.11  Aligned_cols=67  Identities=10%  Similarity=0.059  Sum_probs=46.6

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHH
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      ....|+|.|+||||+.+.|++.|+++|+||.++.-++....+++.-...+. +.+ .    ...+.|+++|..
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~~-~----~~~~~L~~~l~~   88 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADTL-P----FDLDGFREAFTP   88 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGGS-S----SCHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCCC-C----CCHHHHHHHHHH
Confidence            346899999999999999999999999999998887432244554333333 221 1    134566666643

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.17  E-value=0.0042  Score=50.24  Aligned_cols=108  Identities=14%  Similarity=0.149  Sum_probs=67.8

Q ss_pred             CCeEEEEEEe-cCCccHHHHHHHHHHHCCceEEEEEEEEeeC---CCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhc
Q 024865           92 PGHTLVQIVC-QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR---GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  167 (261)
Q Consensus        92 ~~~t~l~V~~-~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~---g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~  167 (261)
                      .+.+.|+|.. +|+||.++++..+|.++|+||..  |.++..   .+..-=+|.|..     .+.++..++-+.+...+.
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~--I~q~~~~~~~g~~~isf~V~~-----~d~~~a~~~L~~~~~~~~   86 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDM--IIQGVPGHDPSRQQMAFTVKK-----DFAQEALEALEPVLAEIG   86 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSC--EEBCCCCSCTTEEEEEEEEEG-----GGHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEE--EEcCCCCCCCCceEEEEEEeh-----HHHHHHHHHHHHHHHHhC
Confidence            3577787776 89999999999999999999984  432111   113333466642     111122222222333333


Q ss_pred             CCceeeeecCCCCcceeeeeeeEEEeCC---cccHHHHHHHHHHhCCceEEE
Q 024865          168 QPLRVTVVSRGPDTELLVANPVELSGKG---RPLVFHDITLALKMLDICIFS  216 (261)
Q Consensus       168 ~~~~~~~~~~~~~~~v~~~t~iev~~~D---RpGLL~dI~~~l~~~~l~I~~  216 (261)
                      -  .+...     ..+   ..+.|.+.+   +||+++++.++|.+.|+||..
T Consensus        87 ~--~v~~~-----~~~---a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~  128 (167)
T 2dt9_A           87 G--EAILR-----PDI---AKVSIVGVGLASTPEVPAKMFQAVASTGANIEM  128 (167)
T ss_dssp             C--EEEEE-----CSE---EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCE
T ss_pred             C--cEEEe-----CCE---EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEE
Confidence            1  21111     011   268888876   999999999999999999954

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.11  E-value=0.0027  Score=56.28  Aligned_cols=45  Identities=11%  Similarity=0.216  Sum_probs=37.7

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEE
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI  137 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~  137 (261)
                      ....|+|.|+||||+.++|++.|+++|+||.++.-++...++++.
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff   50 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFF   50 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEE
Confidence            457899999999999999999999999999999887433444543

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.09  E-value=0.0032  Score=55.73  Aligned_cols=66  Identities=11%  Similarity=0.030  Sum_probs=46.1

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      ...|+|.|+||||+.++|++.|+++|+||.+..-++....+++.-...+..++ .    ...+.|+++|..
T Consensus         8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~-~----~~~~~L~~~f~~   73 (286)
T 3n0v_A            8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQPD-D----FDEAGFRAGLAE   73 (286)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECCS-S----CCHHHHHHHHHH
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecCC-C----CCHHHHHHHHHH
Confidence            46899999999999999999999999999998877433334543322333111 1    234667777654

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.84  E-value=0.0063  Score=50.74  Aligned_cols=67  Identities=7%  Similarity=0.183  Sum_probs=49.9

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ...|.|...|+||.|++|+++|++.|+||.+-.+..+.+.+...=++.|+.+      +...++|.+.|.+..
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~------e~~ieqL~kQL~KLi   95 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD------DKTIEQIEKQAYKLV   95 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC------TTHHHHHHHHHTTST
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC------HHHHHHHHHHhcCcC
Confidence            4689999999999999999999999999998777643454455556666521      345677777776644

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.77  E-value=0.0014  Score=52.75  Aligned_cols=33  Identities=18%  Similarity=0.110  Sum_probs=30.9

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .|+|.|.||+|||++|+++|+++++||..+.+.
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~   34 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID   34 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEe
Confidence            378999999999999999999999999988886

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=96.73  E-value=0.082  Score=46.78  Aligned_cols=45  Identities=9%  Similarity=0.053  Sum_probs=37.2

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEE
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI  137 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~  137 (261)
                      ....|+|.|+||||+.++|++.|+++|+||.++.-++....+++.
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ff   53 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFF   53 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceE
Confidence            356899999999999999999999999999998887433344543

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.52  E-value=0.012  Score=47.11  Aligned_cols=59  Identities=14%  Similarity=0.213  Sum_probs=43.1

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      .|.|.|.||+||+++|+.+|+.+++||..+.+.  +.| .    +++.-..   .+.+.+..+...+..
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~--~~g-~----i~~~~~~---~~~~~~~~L~~~l~~   60 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID--PIG-R----IYLNFAE---LEFESFSSLMAEIRR   60 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEE--TTT-E----EEEEECC---CCHHHHHHHHHHHHH
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEe--cCC-E----EEEEEEe---CCHHHHHHHHHHHHc
Confidence            578999999999999999999999999999887  556 3    3333111   223455666665554

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.45  E-value=0.034  Score=45.64  Aligned_cols=110  Identities=17%  Similarity=0.135  Sum_probs=66.8

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHHCCceEEEEEEEEe-eC--CCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC
Q 024865           93 GHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRR-QR--GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  168 (261)
Q Consensus        93 ~~t~l~V~-~~DrpGLla~I~~vl~~~~l~I~~AkI~t~-t~--g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~  168 (261)
                      +.+.|+|. .+|+||.+++|..+|+++|+||..  |.++ +.  .+..-=+|.|..+.     .++..++.+.+.+.+. 
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~--I~q~~s~~~~g~~~isftv~~~~-----~~~a~~~L~~~~~el~-   86 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDM--VLQNVSKVEDGKTDITFTCSRDV-----GPAAVEKLDSLRNEIG-   86 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCC--EEECCCCTTTCEEEEEEEEETTT-----HHHHHHHHHHTHHHHC-
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEE--EEecCCcccCCccEEEEEEehhH-----HHHHHHHHHHHHHhcC-
Confidence            45666653 589999999999999999999973  3321 11  23555567775211     1122222222222221 


Q ss_pred             CceeeeecCCCCcceeeeeeeEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 024865          169 PLRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE  218 (261)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~Ak  218 (261)
                      ...+...     ..+   ..+.|.+.   ++||+.+++.++|++.||||....
T Consensus        87 ~~~v~~~-----~~v---a~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           87 FSQLLYD-----DHI---GKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             CSEEEEE-----SCE---EEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             cceEEEe-----CCE---EEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence            1111111     011   25777665   899999999999999999996654

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.25  E-value=0.013  Score=49.75  Aligned_cols=49  Identities=10%  Similarity=0.201  Sum_probs=34.7

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeC---CCeEEEEEEE
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR---GNCEIDLFIM  142 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~---g~~v~D~F~V  142 (261)
                      ...|.|.+.||||+|++|+.+|++++.||...+..+...   ++.+.-.+.+
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV   55 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   55 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEE
Confidence            357899999999999999999999999999998885431   2255444444

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=96.22  E-value=0.0069  Score=53.54  Aligned_cols=56  Identities=9%  Similarity=0.065  Sum_probs=43.2

Q ss_pred             eeeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc
Q 024865          186 ANPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP  245 (261)
Q Consensus       186 ~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~  245 (261)
                      .|.|-+...|+||-||++-..|+..|||+  .||..+-...+-++ |.||| |-+|+.-.
T Consensus       200 ktsl~f~~~~~pGaL~~~L~~Fa~~gINL--tkIESRP~~~~~~~-Y~Ffv-D~eg~~~d  255 (283)
T 2qmx_A          200 KTSIVFALPNEQGSLFRALATFALRGIDL--TKIESRPSRKKAFE-YLFYA-DFIGHRED  255 (283)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCCE--EEEEEEECSSSTTE-EEEEE-EEESCTTS
T ss_pred             eEEEEEEcCCCCchHHHHHHHHHHcCCCe--eEEEeeEcCCCCcc-eEEEE-EEecCCCc
Confidence            34555566799999999999999999999  89975555555566 57999 66676544

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.14  E-value=0.043  Score=45.92  Aligned_cols=110  Identities=16%  Similarity=0.111  Sum_probs=66.3

Q ss_pred             CCeEEEEEE-ecCCccHHHHHHHHHHHCCceEEEEEEEEee---CCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhc
Q 024865           92 PGHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQ---RGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  167 (261)
Q Consensus        92 ~~~t~l~V~-~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t---~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~  167 (261)
                      .+.+.|+|. .+|+||..++|.++|++.|+||--  |..+.   .+....-+|.+..     .+......+.+.+...+.
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDm--I~Qs~s~~~~~~~~~sftv~~-----~d~~~~~~~l~~~~~~~~  105 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDM--VLQNVSKVEDGKTDITFTCSR-----DVGPAAVEKLDSLRNEIG  105 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCC--EECCCCC--CCEEEEEEEEEG-----GGHHHHHHHHHTTHHHHC
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEE--EeeccccccccceEEEEecch-----hhHHHHHHHHHHHHhhhc
Confidence            357788876 499999999999999999999973  43211   1224555677641     011122222222222221


Q ss_pred             CCceeeeecCCCCcceeeeeeeEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 024865          168 QPLRVTVVSRGPDTELLVANPVELSG---KGRPLVFHDITLALKMLDICIFSA  217 (261)
Q Consensus       168 ~~~~~~~~~~~~~~~v~~~t~iev~~---~DRpGLL~dI~~~l~~~~l~I~~A  217 (261)
                      . ..+...     ..+   ..+.|.+   ..+||+.+++.++|++.||||..-
T Consensus       106 ~-~~v~~~-----~~i---akVSvVG~GM~~~~GVaak~F~aLa~~~INI~mI  149 (200)
T 4go7_X          106 F-SQLLYD-----DHI---GKVSLIGAGMRSHPGVTATFCEALAAVGVNIELI  149 (200)
T ss_dssp             C-SEEEEE-----CCE---EEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             e-eeEEEe-----cCe---eeeeeeccccccCCCcHHHHHHHHHHCCCCEEEE
Confidence            1 111110     011   1455555   689999999999999999999543

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=96.05  E-value=0.011  Score=52.92  Aligned_cols=65  Identities=14%  Similarity=0.167  Sum_probs=45.8

Q ss_pred             eeeEEEeC-CcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc--hHHHHHHHHH
Q 024865          187 NPVELSGK-GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP--RNKIEEGVWK  255 (261)
Q Consensus       187 t~iev~~~-DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~--~~~~~~~l~~  255 (261)
                      |.|-+... |+||-||++-..|+..|||+  .||..+-...+-++ |.||| |.+|+.-.  .++.++.|+.
T Consensus       202 TSl~f~~~~~~pGaL~~~L~~Fa~~gINL--tkIESRP~~~~~~~-Y~Ffi-D~eg~~~d~~v~~aL~~L~~  269 (313)
T 3mwb_A          202 TTVVVPLPEDHPGALMEILDQFASRGVNL--SRIESRPTGQYLGH-YFFSI-DADGHATDSRVADALAGLHR  269 (313)
T ss_dssp             EEEEEECSSCCTTHHHHHHHHHHTTTCCE--EEEEEEECSSSTTS-EEEEE-EEESCTTSHHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCHHHHHHHHHHHCCccE--EEEEEeecCCCCcc-EEEEE-EEeCCCCcHHHHHHHHHHHH
Confidence            45656664 99999999999999999999  78965555555555 57999 66676543  2334444443

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.04  E-value=0.0094  Score=50.57  Aligned_cols=34  Identities=15%  Similarity=0.001  Sum_probs=27.1

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEee
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGR  221 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t  221 (261)
                      .|+|.+.||||+|++|+++|+++++||.+....+
T Consensus         6 tL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~   39 (223)
T 1y7p_A            6 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFL   39 (223)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEE
T ss_pred             EEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEc
Confidence            5899999999999999999999999998877764

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=96.01  E-value=0.026  Score=50.89  Aligned_cols=47  Identities=13%  Similarity=0.126  Sum_probs=38.7

Q ss_pred             CcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc
Q 024865          195 GRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP  245 (261)
Q Consensus       195 DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~  245 (261)
                      |+||-||++-..|+..|||+  .||..+-...+-++ |.||| |.+|+.-.
T Consensus       217 ~~pGaL~~~L~~Fa~~gINL--tkIESRP~~~~~~~-Y~Ffi-D~eg~~~d  263 (329)
T 3luy_A          217 TGPGVLANLLDVFRDAGLNM--TSFISRPIKGRTGT-YSFIV-TLDAAPWE  263 (329)
T ss_dssp             CSTTHHHHHHHHHHHTTCCE--EEEEEEEETTEEEE-EEEEE-EESSCTTS
T ss_pred             CCCCHHHHHHHHHHHCCcce--EEEEeeECCCCCcc-EEEEE-EEeCCcCC
Confidence            89999999999999999999  89975555566677 68998 67787554

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=95.94  E-value=0.0059  Score=54.21  Aligned_cols=33  Identities=9%  Similarity=-0.112  Sum_probs=29.7

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      ++.|.|+||||+++.|+..|+++|+||..+.=.
T Consensus        12 vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~   44 (292)
T 3lou_A           12 VLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVF   44 (292)
T ss_dssp             EEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEE
Confidence            699999999999999999999999999665543

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=95.90  E-value=0.019  Score=46.65  Aligned_cols=33  Identities=6%  Similarity=-0.075  Sum_probs=31.0

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .++|...||||+|++|+.+|++.|+||.+....
T Consensus         5 ~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~   37 (164)
T 2f1f_A            5 ILSVLLENESGALSRVIGLFSQRGYNIESLTVA   37 (164)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCeeeceee
Confidence            688999999999999999999999999988876

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=95.89  E-value=0.0068  Score=53.69  Aligned_cols=32  Identities=19%  Similarity=0.165  Sum_probs=29.4

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEI  219 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI  219 (261)
                      ++.|.|+||||+++.|+..|+++|+||..+.-
T Consensus         9 vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q   40 (287)
T 3nrb_A            9 VLSLACQDAPGIVSEVSTFLFNNGANIVEAEQ   40 (287)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEeeee
Confidence            69999999999999999999999999966654

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=95.89  E-value=0.0066  Score=53.80  Aligned_cols=32  Identities=19%  Similarity=0.093  Sum_probs=29.3

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEI  219 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI  219 (261)
                      ++.|.|+||||+++.|+..|+++|+||....=
T Consensus         8 iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q   39 (288)
T 3obi_A            8 VLTLSCPDRAGIVSAVSTFLFENGQNILDAQQ   39 (288)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHHTTEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCcEEeeee
Confidence            69999999999999999999999999966554

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=95.88  E-value=0.0068  Score=53.63  Aligned_cols=32  Identities=6%  Similarity=-0.198  Sum_probs=29.2

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEE
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEI  219 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI  219 (261)
                      ++.|.|.||||+++.|+..|+++|+||....=
T Consensus        10 vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q   41 (286)
T 3n0v_A           10 ILTADCPSMLGTVDVVTRYLFEQRCYVTEHHS   41 (286)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCCeeeeee
Confidence            69999999999999999999999999965553

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.84  E-value=0.14  Score=47.43  Aligned_cols=108  Identities=18%  Similarity=0.157  Sum_probs=67.2

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHHCCceEEEEEEEEeeC--CCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865           93 GHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQR--GNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  169 (261)
Q Consensus        93 ~~t~l~V~-~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~--g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~  169 (261)
                      +.+.|.|. .+|+||.+++|...|.++|+||..--..+ ..  .+...=+|.|..     .+.++..++.+.+...+.. 
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~-s~~~~g~~~isf~v~~-----~~~~~a~~~l~~~~~~~~~-  335 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNV-FSVEDGTTDITFTCPR-----SDGRRAMEILKKLQVQGNW-  335 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECC-CC--CCEEEEEEEEET-----TTHHHHHHHHHHHHTTTTC-
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccC-ccccCCcceEEEEEec-----hhHHHHHHHHHHHHHHcCC-
Confidence            56788888 69999999999999999999998422222 22  223334566652     1122222222223322321 


Q ss_pred             ceeeeecCCCCcceeeeeeeEEEeC---CcccHHHHHHHHHHhCCceEE
Q 024865          170 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIF  215 (261)
Q Consensus       170 ~~~~~~~~~~~~~v~~~t~iev~~~---DRpGLL~dI~~~l~~~~l~I~  215 (261)
                      ..+...     ..+   ..+.|.+.   ++||+++++.++|.+.||||.
T Consensus       336 ~~v~~~-----~~~---a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~  376 (421)
T 3ab4_A          336 TNVLYD-----DQV---GKVSLVGAGMKSHPGVTAEFMEALRDVNVNIE  376 (421)
T ss_dssp             SEEEEE-----CCE---EEEEEECGGGTSCTTHHHHHHHHHHHTTCCCC
T ss_pred             ceEEEe-----CCe---EEEEEEccCcccCccHHHHHHHHHHHCCCCEE
Confidence            111110     011   25777774   899999999999999999997

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=95.83  E-value=0.0067  Score=54.13  Aligned_cols=33  Identities=12%  Similarity=-0.007  Sum_probs=29.7

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      ++.|.|+||||+++.|+..|+++|+||..+.=.
T Consensus        24 iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~   56 (302)
T 3o1l_A           24 RLVIACPDRVGIVAKVSNFLASHNGWITEASHH   56 (302)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEE
Confidence            799999999999999999999999999665543

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=95.59  E-value=0.024  Score=49.58  Aligned_cols=50  Identities=12%  Similarity=0.234  Sum_probs=39.2

Q ss_pred             eeeEEEe---CCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCC
Q 024865          187 NPVELSG---KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGD  240 (261)
Q Consensus       187 t~iev~~---~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~  240 (261)
                      |.|-+..   .|+||-||++-..|+..|||+  .||..+-...+-++ |.||| |.+
T Consensus       187 tsl~f~~~~~~~~pGaL~~~L~~Fa~~gINL--tkIESRP~~~~~~~-Y~Ffi-D~e  239 (267)
T 2qmw_A          187 TSLMFLITPMHDKPGLLASVLNTFALFNINL--SWIESRPLKTQLGM-YRFFV-QAD  239 (267)
T ss_dssp             SEEEEEEEESSCCTTHHHHHHHHHHTTTCCE--EEEEEEECSSSTTC-EEEEE-EES
T ss_pred             EEEEEEcCCCCCCcChHHHHHHHHHHcCCCe--eEEEEeecCCCCcc-EEEEE-EEe
Confidence            4566666   799999999999999999999  89965555555566 57999 444

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=95.50  E-value=0.01  Score=54.57  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=29.9

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      +|.|+|+||||+++.|+..|+++|+||....-.
T Consensus        14 ~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~   46 (415)
T 3p96_A           14 LITVTGVDQPGVTATLFEVLSRHGVELLNVEQV   46 (415)
T ss_dssp             EEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeE
Confidence            799999999999999999999999999666543

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=95.06  E-value=0.012  Score=47.84  Aligned_cols=34  Identities=9%  Similarity=-0.001  Sum_probs=31.3

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      ..+.|...||||+|++|+.+|++.|+||.+.-++
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~   38 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVA   38 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEE
Confidence            3688999999999999999999999999888876

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=94.23  E-value=0.36  Score=37.37  Aligned_cols=46  Identities=15%  Similarity=0.174  Sum_probs=34.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEE
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM  142 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V  142 (261)
                      ..+-+..+|+||.+++++++|++.|+||.....+. ..+ ...-+|.+
T Consensus        73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~-~~~~~i~~  118 (144)
T 2f06_A           73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNN-VANVVIRP  118 (144)
T ss_dssp             EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETT-EEEEEEEE
T ss_pred             eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCC-cEEEEEEe
Confidence            56778899999999999999999999997555442 233 55444433

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=93.87  E-value=0.21  Score=47.59  Aligned_cols=52  Identities=17%  Similarity=0.149  Sum_probs=45.2

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      +.+..+.+.-+|+||..++|+.+|.++|+||.+.++.....|+.++-++.++
T Consensus       452 ~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd  503 (529)
T 1ygy_A          452 AQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLD  503 (529)
T ss_dssp             SCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEES
T ss_pred             CCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEEC
Confidence            4567889999999999999999999999999999998655677888777775

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=93.55  E-value=0.37  Score=44.39  Aligned_cols=49  Identities=6%  Similarity=0.186  Sum_probs=43.1

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      +...|.+.-+|+||.+++|+.+|.++|+||..-+..  +.|+.+.-++-|+
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~--r~g~~A~~vidvD  378 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQ--TSAQMGYVVIDIE  378 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEE--ECSSEEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhcc--CCCCEEEEEEEcC
Confidence            456788999999999999999999999999988888  5787988888775

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=93.28  E-value=0.07  Score=44.40  Aligned_cols=34  Identities=18%  Similarity=0.214  Sum_probs=30.8

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      ..|.|...|+||.|++|+.+|++.|+||.+--++
T Consensus        30 ~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~   63 (193)
T 2fgc_A           30 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVG   63 (193)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             EEEEEEECCCChHHHHHHHHHHHCCceEEEEEee
Confidence            4789999999999999999999999999876665

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=92.40  E-value=1.3  Score=42.88  Aligned_cols=110  Identities=13%  Similarity=0.123  Sum_probs=69.8

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcC
Q 024865           92 PGHTLVQIVCQ---DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQ  168 (261)
Q Consensus        92 ~~~t~l~V~~~---DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~  168 (261)
                      .+.+.|.|.+.   .+||..+++..+|.+.|+||..  |+++  . . --+|.|.        ++..++..++|.+.+..
T Consensus       353 ~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~--istS--e-~-~Is~vI~--------~~d~~~Av~aLh~~f~~  418 (600)
T 3l76_A          353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEM--ISTS--E-V-KVSCVID--------QRDADRAIAALSNAFGV  418 (600)
T ss_dssp             CSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCE--EEEC--S-S-EEEEEEE--------GGGHHHHHHHHHHHTTC
T ss_pred             CCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEE--EecC--C-C-EEEEEEc--------HHHHHHHHHHHHHhhcc
Confidence            36788898875   7999999999999999999983  4432  2 2 2235554        23444555667776643


Q ss_pred             Cceeeee-----cCCCCcceeee---eeeEEE-eCCcccHHHHHHHHHHhCCceEE
Q 024865          169 PLRVTVV-----SRGPDTELLVA---NPVELS-GKGRPLVFHDITLALKMLDICIF  215 (261)
Q Consensus       169 ~~~~~~~-----~~~~~~~v~~~---t~iev~-~~DRpGLL~dI~~~l~~~~l~I~  215 (261)
                      .......     ...+-+-|..+   ..|.|. -+|+||+.++|-..|++.||||-
T Consensus       419 ~~t~~~~~~~~~~~~~v~Gia~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vD  474 (600)
T 3l76_A          419 TLSPPKNQTDTSHLPAVRGVALDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVD  474 (600)
T ss_dssp             CBCCCCCCCC---CCSCCEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCC
T ss_pred             cCCCccccccccccCceEEEEeeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEE
Confidence            3211000     00001122222   234443 47999999999999999999993

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=92.09  E-value=0.82  Score=42.70  Aligned_cols=103  Identities=14%  Similarity=0.155  Sum_probs=68.2

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHHhhcC
Q 024865           93 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWMELLQ  168 (261)
Q Consensus        93 ~~t~l~V~~---~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~~L~~  168 (261)
                      +.+.|.|..   .+.||.+++|..+|.+++++|..  |.+   + ..-=+|.|. .+-.     ...+.+.+.|.+.+..
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~--i~~---~-~~~is~~V~~~d~~-----~~~~~~~~el~~~~~~  365 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEH--MPS---G-VDSVSLVIEDCKLD-----GKCDKIIEEIKKQCNP  365 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEE--BCE---E-TTEEEEEEEHHHHT-----TTHHHHHHHHHHHSCC
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEE--Eec---C-CCEEEEEEecchHH-----HHHHHHHHHHHHhcCC
Confidence            456788875   69999999999999999999973  432   2 112236665 2111     1234455555554431


Q ss_pred             CceeeeecCCCCcceeee---eeeEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 024865          169 PLRVTVVSRGPDTELLVA---NPVELSGK---GRPLVFHDITLALKMLDICIFSAE  218 (261)
Q Consensus       169 ~~~~~~~~~~~~~~v~~~---t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~Ak  218 (261)
                       .           ++.+.   ..|.|.+.   .+||+.+++.++|.+.||||..-.
T Consensus       366 -~-----------~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          366 -D-----------SIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             -S-----------EEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             -C-----------cEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEE
Confidence             1           12221   26777775   699999999999999999996544

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=91.90  E-value=2.3  Score=41.09  Aligned_cols=108  Identities=22%  Similarity=0.304  Sum_probs=67.0

Q ss_pred             CCeEEEEEE-ecCCccHHHHHHHHHHHCCceEEEEEEEEe--eC---CC-eEEEEEEEecCCCCCCChhhHHHHHHHHHH
Q 024865           92 PGHTLVQIV-CQDHKGLLYDIMRTLKDYNIQVSYGRFSRR--QR---GN-CEIDLFIMQADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        92 ~~~t~l~V~-~~DrpGLla~I~~vl~~~~l~I~~AkI~t~--t~---g~-~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      .+.+.|.|. .+|+||..++|.+.|+++|+||--  |..+  .+   |. ..-=+|.|.        .+..+...+.|.+
T Consensus       442 ~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDm--I~q~~~~~~~~g~~~~~isftv~--------~~d~~~a~~~l~~  511 (600)
T 3l76_A          442 QDQAQIAIRHVPDRPGMAAQLFTALAEANISVDM--IIQSQRCRINQGTPCRDIAFMVA--------EGDSSQAEAILQP  511 (600)
T ss_dssp             CSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCE--EEEEEECCCSSSSCEEEEEEEEE--------HHHHHHHHHHHHH
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEE--EEecccccccCCCccceEEEEEe--------HHHHHHHHHHHHH
Confidence            356777774 499999999999999999999952  2211  11   31 222246664        2233333333433


Q ss_pred             hhcCCceeeeecCCCCcceeee---eeeEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 024865          165 ELLQPLRVTVVSRGPDTELLVA---NPVELSG---KGRPLVFHDITLALKMLDICIFSAE  218 (261)
Q Consensus       165 ~L~~~~~~~~~~~~~~~~v~~~---t~iev~~---~DRpGLL~dI~~~l~~~~l~I~~Ak  218 (261)
                       +.....        ..++.+.   ..|.|.+   ..+||+-+++.++|++.||||..-.
T Consensus       512 -~~~~~~--------~~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          512 -LIKDWL--------DAAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             -HTTTST--------TCEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             -HHHhcC--------CceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence             222111        0112221   2677776   5999999999999999999995443

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=90.82  E-value=1.8  Score=38.83  Aligned_cols=54  Identities=17%  Similarity=0.251  Sum_probs=39.5

Q ss_pred             CeEEEEEEec--CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeE-EEEEEEecCCCC
Q 024865           93 GHTLVQIVCQ--DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCE-IDLFIMQADGKK  148 (261)
Q Consensus        93 ~~t~l~V~~~--DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v-~D~F~V~~~g~~  148 (261)
                      +.|.+.+.++  |+||-|+++-++|+.+|+|+.  ||.+....+.. .=.|||+-+|..
T Consensus       205 ~kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfiD~eg~~  261 (329)
T 3luy_A          205 EYESVLTLIPLVTGPGVLANLLDVFRDAGLNMT--SFISRPIKGRTGTYSFIVTLDAAP  261 (329)
T ss_dssp             CEEEEEEEECSCCSTTHHHHHHHHHHHTTCCEE--EEEEEEETTEEEEEEEEEEESSCT
T ss_pred             CceEEEEEecCCCCCCHHHHHHHHHHHCCcceE--EEEeeECCCCCccEEEEEEEeCCc
Confidence            3454444454  799999999999999999998  78776654343 346888866654

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=90.53  E-value=0.98  Score=39.62  Aligned_cols=54  Identities=17%  Similarity=0.228  Sum_probs=42.2

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCe-EEEEEEEecCCCC
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGKK  148 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~-v~D~F~V~~~g~~  148 (261)
                      ..|.|.+..+|+||-|+++-++|..+|+|+.  ||.+....+. -.=.|+|+-+|..
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfvD~eg~~  253 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLT--KIESRPSRKKAFEYLFYADFIGHR  253 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEE--EEEEEECSSSTTEEEEEEEEESCT
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCee--EEEeeEcCCCCcceEEEEEEecCC
Confidence            3577777789999999999999999999998  7887665432 3456899855653

>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A

Probab=90.36  E-value=0.32  Score=45.17  Aligned_cols=64  Identities=14%  Similarity=0.009  Sum_probs=43.1

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc--hHHHHHHHHHH
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP--RNKIEEGVWKL  256 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~--~~~~~~~l~~~  256 (261)
                      .|-++..|+||-|+++-.+|+.+|||+  .||..+-...+-++ +.||| |-+ +.-.  .+++++.|+..
T Consensus        36 SLiFsl~n~pGAL~~~L~~Fa~~gINL--TkIESRPsk~~~~e-Y~FfV-D~e-h~~d~~v~~AL~eL~~~  101 (429)
T 1phz_A           36 SLIFSLKEEVGALAKVLRLFEENDINL--THIESRPSRLNKDE-YEFFT-YLD-KRTKPVLGSIIKSLRND  101 (429)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCT--TSEEEEECSSCTTE-EEEEE-CBC-GGGHHHHHHHHHHHHHT
T ss_pred             EEEEEeCCCccHHHHHHHHHHHcCCce--EEEEeeecCCCCcc-EEEEE-EEe-eCCCHHHHHHHHHHHhh
Confidence            455555799999999999999999999  78865454444455 57999 444 3221  23445555443

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=89.89  E-value=1.1  Score=42.68  Aligned_cols=107  Identities=12%  Similarity=0.108  Sum_probs=65.7

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCC-ChhhHHHHHHHHHHhhc
Q 024865           93 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIV-DPSKQNGLSSRLWMELL  167 (261)
Q Consensus        93 ~~t~l~V~~---~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~-~~~~~~~l~~~L~~~L~  167 (261)
                      +.+.|.|..   .++||.+++|..+|+++|+||..  |.++ .   .-=+|.|. .+..... ..+.++.    +.+.+.
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~--I~ss-e---~sis~~v~~~~~~~~~~~~~~l~~----~~~el~  409 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDV--VATS-E---VSISLTLDPSKLWSRELIQQELDH----VVEELE  409 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEE--EEEE-T---TEEEEEECCGGGSSSCCCHHHHHH----HHHHHT
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEE--EEeC-C---CeEEEEEechHhhhhhHHHHHHHH----HHHHhC
Confidence            567888885   78999999999999999999983  4432 1   11236664 2211100 1112222    333333


Q ss_pred             CCceeeeecCCCCcceeeeeeeEEEeC--CcccHHHHHHHHHHhCCceEEEE
Q 024865          168 QPLRVTVVSRGPDTELLVANPVELSGK--GRPLVFHDITLALKMLDICIFSA  217 (261)
Q Consensus       168 ~~~~~~~~~~~~~~~v~~~t~iev~~~--DRpGLL~dI~~~l~~~~l~I~~A  217 (261)
                      .-..+...     ..+   ..|.|.+.  ..||+.+++..+|.+.|+||..-
T Consensus       410 ~~~~v~~~-----~~~---a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mI  453 (510)
T 2cdq_A          410 KIAVVNLL-----KGR---AIISLIGNVQHSSLILERAFHVLYTKGVNVQMI  453 (510)
T ss_dssp             TTSEEEEE-----EEE---EEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEE
T ss_pred             CCCeEEEe-----CCc---EEEEEEEECCCChhHHHHHHHHHHHCCCCEEEE
Confidence            21111110     011   25777776  88999999999999999999654

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=87.54  E-value=0.95  Score=35.70  Aligned_cols=99  Identities=13%  Similarity=0.052  Sum_probs=59.6

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhcCC
Q 024865           93 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELLQP  169 (261)
Q Consensus        93 ~~t~l~V~~---~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~~~  169 (261)
                      +.+.|.|..   ++.||..+++..+|+++|+||.  -|.++ ..   -=+|.|.. .      +..+++.++|.+    .
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd--~I~~s-~~---~Isf~v~~-~------~~~~~il~~l~~----~   79 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVD--MVATS-EV---GVSLTIDN-D------KNLPDIVRALSD----I   79 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCS--CEECC-SS---EEEEEESC-C------TTHHHHHHHHTT----T
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEE--EEEec-CC---EEEEEECC-h------HHHHHHHHHHhc----c
Confidence            567888874   5889999999999999999997  34422 11   22355541 1      123333333332    1


Q ss_pred             ceeeeecCCCCcceeeeeeeEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 024865          170 LRVTVVSRGPDTELLVANPVELSGK---GRPLVFHDITLALKMLDICIFSAE  218 (261)
Q Consensus       170 ~~~~~~~~~~~~~v~~~t~iev~~~---DRpGLL~dI~~~l~~~~l~I~~Ak  218 (261)
                      ..+....     .+   ..+.|.+.   ++||+.+++..+|+  |++|..-.
T Consensus        80 ~~v~~~~-----~~---a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~is  121 (157)
T 3mah_A           80 GDVTVDK-----DM---VIICIVGDMEWDNVGFEARIINALK--GVPVRMIS  121 (157)
T ss_dssp             EEEEEEE-----EE---EEEEEEC------CCHHHHHHHTTT--TSCCSEEE
T ss_pred             CeEEEeC-----Ce---EEEEEECCCcccCccHHHHHHHHhC--CCCeEEEe
Confidence            1111100     11   25777764   78999999999999  89985543

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=86.90  E-value=1.9  Score=39.85  Aligned_cols=49  Identities=16%  Similarity=0.249  Sum_probs=39.8

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEE
Q 024865           92 PGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM  142 (261)
Q Consensus        92 ~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V  142 (261)
                      .+.+.|.+.-+|.||.+.+|..+|+++|+||..-.-.  +.|+.+.-+.-|
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~--~~~~~~y~~~d~  389 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQ--TDGEVGYLVMEA  389 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEE--ECSSCEEEEEEE
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhcc--CCCceEEEEEEe
Confidence            3578999999999999999999999999999965444  678777444433

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=86.66  E-value=1.9  Score=38.33  Aligned_cols=54  Identities=28%  Similarity=0.469  Sum_probs=40.4

Q ss_pred             CeEEEEEEec-CCccHHHHHHHHHHHCCceEEEEEEEEeeCCCe-EEEEEEEecCCCC
Q 024865           93 GHTLVQIVCQ-DHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGKK  148 (261)
Q Consensus        93 ~~t~l~V~~~-DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~-v~D~F~V~~~g~~  148 (261)
                      ..|.|.+..+ |+||-|+++-++|..+|+|+.  ||.+....+. -.=.|+|+-+|..
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfiD~eg~~  255 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLS--RIESRPTGQYLGHYFFSIDADGHA  255 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEE--EEEEEECSSSTTSEEEEEEEESCT
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEE--EEEEeecCCCCccEEEEEEEeCCC
Confidence            4677777785 999999999999999999998  7876554322 2234899855543

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=85.43  E-value=2.6  Score=36.61  Aligned_cols=49  Identities=24%  Similarity=0.361  Sum_probs=38.5

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCe-EEEEEEEe
Q 024865           93 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQ  143 (261)
Q Consensus        93 ~~t~l~V~~---~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~-v~D~F~V~  143 (261)
                      ..|.|.+..   +|+||-|+++-+.|+.+|+|+.  ||.+....+. -.=.|+|+
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLt--kIESRP~~~~~~~Y~FfiD  237 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLS--WIESRPLKTQLGMYRFFVQ  237 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEE--EEEEEECSSSTTCEEEEEE
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCee--EEEEeecCCCCccEEEEEE
Confidence            456666666   8999999999999999999998  7877665322 33458998

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=85.27  E-value=1.5  Score=40.32  Aligned_cols=38  Identities=11%  Similarity=0.066  Sum_probs=31.6

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccce
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDR  227 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger  227 (261)
                      .+-+.-.|+||.+..|+.+|.++|+||..-...+  -|+.
T Consensus       333 rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~  370 (404)
T 1sc6_A          333 RLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQM  370 (404)
T ss_dssp             EEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSE
T ss_pred             eEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCE
Confidence            4557778999999999999999999998777774  4444

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=83.48  E-value=0.84  Score=42.61  Aligned_cols=31  Identities=35%  Similarity=0.277  Sum_probs=26.5

Q ss_pred             eeeeEEEeCCcccHHHHHHHHHHhCCceEEE
Q 024865          186 ANPVELSGKGRPLVFHDITLALKMLDICIFS  216 (261)
Q Consensus       186 ~t~iev~~~DRpGLL~dI~~~l~~~~l~I~~  216 (261)
                      ..-+-+...|+||.|++|+.+|.++||+|.+
T Consensus       359 ~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~  389 (444)
T 3mtj_A          359 AYYLRLRAFDRPGVLADITRILADSSISIDA  389 (444)
T ss_dssp             EEEEEEEEC-CCHHHHHHHHHHHHTTCCEEE
T ss_pred             eeEEEEEecCcccHHHHHHHHHHhcCCceeE
Confidence            3467788899999999999999999999954

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=82.75  E-value=2.7  Score=39.87  Aligned_cols=41  Identities=17%  Similarity=0.159  Sum_probs=34.5

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeecccee
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDRE  228 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~  228 (261)
                      .+-+.-.|+||.+..|+..|.++||||....+.+...|..+
T Consensus       456 ~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a  496 (529)
T 1ygy_A          456 NLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGA  496 (529)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCE
T ss_pred             EEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEE
Confidence            56677889999999999999999999999999865555553

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=81.37  E-value=6  Score=31.28  Aligned_cols=33  Identities=27%  Similarity=0.312  Sum_probs=30.3

Q ss_pred             CCeEEEEEEecC---CccHHHHHHHHHHHCCceEEE
Q 024865           92 PGHTLVQIVCQD---HKGLLYDIMRTLKDYNIQVSY  124 (261)
Q Consensus        92 ~~~t~l~V~~~D---rpGLla~I~~vl~~~~l~I~~  124 (261)
                      .+.+.+.|.+.+   +||.++++..+|.++|+||..
T Consensus       101 ~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~  136 (167)
T 2re1_A          101 DTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM  136 (167)
T ss_dssp             SSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE
T ss_pred             CCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE
Confidence            368899999977   999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.6
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.38
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.05
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.05
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	98.01
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	98.0
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.99
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.86
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.71
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.62
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.6
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.57
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.5
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.48
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.42
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.35
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	97.32
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	97.25
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.24
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.16
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	96.23
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	95.96
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	95.45
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	95.19
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	94.53
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	94.43
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	88.67
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	88.49
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	86.8
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	84.28
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	83.83
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	81.67

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.60  E-value=1.8e-07  Score=66.72  Aligned_cols=65  Identities=17%  Similarity=0.267  Sum_probs=52.0

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHh
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWME  165 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~  165 (261)
                      .+.+|+++++||||++++++++|+++|+||.+++..  ..|+...-.+.|+.      ++...+++++.|.+.
T Consensus         4 ~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~--~~~~~~~~~~~v~~------~~~~~~~l~~~L~~l   68 (86)
T d1u8sa1           4 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIA--MFGKEFTLLMLISG------SPSNITRVETTLPLL   68 (86)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE--EETTEEEEEEEEEE------CHHHHHHHHHHHHHH
T ss_pred             cEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeE--EECCeeEEEEEEEc------CcccHHHHHHHHHHH
Confidence            578999999999999999999999999999999988  56768777777761      123456666666553

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.38  E-value=1.2e-06  Score=61.72  Aligned_cols=62  Identities=6%  Similarity=0.141  Sum_probs=46.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe-cCCCCCCChhhHHHHHHHHHH
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ-ADGKKIVDPSKQNGLSSRLWM  164 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~-~~g~~l~~~~~~~~l~~~L~~  164 (261)
                      ++|+|.++||||+.+.++++|+++|+||.+..-+  +.++...-.+.+. +.+.      ..+.++++|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~--~~~~~f~~~~~v~~~~~~------~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQT--VLDEYFTMMAVVSSDEKQ------DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEE--EETTEEEEEEEEEESSCC------CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeE--EeCCEEEEEEEEEEecCC------CHHHHHHHHHH
Confidence            5799999999999999999999999999998877  4555665566666 3321      23456666654

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.05  E-value=5.7e-06  Score=58.62  Aligned_cols=46  Identities=17%  Similarity=0.317  Sum_probs=37.3

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLD  237 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~  237 (261)
                      +|.+.|+||||++++|+++|+++|+||..++-.  +.|.+-  +..+.|+
T Consensus         7 vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~--~~~~~~--~~~~~v~   52 (86)
T d1u8sa1           7 VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIA--MFGKEF--TLLMLIS   52 (86)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE--EETTEE--EEEEEEE
T ss_pred             EEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeE--EECCee--EEEEEEE
Confidence            799999999999999999999999999888876  555552  2235554

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.05  E-value=1.6e-05  Score=55.65  Aligned_cols=34  Identities=12%  Similarity=0.136  Sum_probs=30.2

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+|.|.|+||||++++|+.+|+++|+||....=.
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~   36 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQT   36 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeE
Confidence            3689999999999999999999999999766543

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.01  E-value=2.7e-06  Score=59.23  Aligned_cols=63  Identities=19%  Similarity=0.083  Sum_probs=39.9

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccchHHHHHHHH
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVPRNKIEEGVW  254 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~~~~~~~~l~  254 (261)
                      -|.|.+.||||+|++|+.+|+++++||.+..-.+...|..... ..|++.+.+++ +  +.+.++|+
T Consensus         3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~-~~i~v~~~~~~-l--~~ll~kL~   65 (77)
T d1y7pa2           3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGK-ALIYFEIEGGD-F--EKILERVK   65 (77)
T ss_dssp             EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTE-EEEEEEECSSC-H--HHHHHHHH
T ss_pred             eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEE-EEEEEEcCccc-H--HHHHHHHH
Confidence            4889999999999999999999999998876553333433222 35777665432 3  33555554

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.00  E-value=2.3e-05  Score=54.44  Aligned_cols=51  Identities=18%  Similarity=0.150  Sum_probs=44.4

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      ..+.+.+...|+||.+++|+.+|.++|+||...+..+...|+.+.-++.++
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD   52 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLD   52 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEES
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcC
Confidence            357889999999999999999999999999999998666788887777764

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.99  E-value=1.5e-05  Score=57.10  Aligned_cols=30  Identities=13%  Similarity=0.022  Sum_probs=27.1

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSA  217 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~A  217 (261)
                      .+.|.|.|||||+++|++.|+++|+||...
T Consensus         8 ~v~v~g~DrpGIV~~it~~la~~~~nI~~l   37 (93)
T d1u8sa2           8 EVYVESDDKLGLTEKFTQFFAQRQIGMASL   37 (93)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEEECCCCCHHHHHHHHHHHcCCCchhh
Confidence            577889999999999999999999999443

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.86  E-value=8.3e-06  Score=56.68  Aligned_cols=48  Identities=10%  Similarity=0.205  Sum_probs=34.5

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      +-|.|.+.||||+|++|+.+|+.+++||.+....+..+| .+.-.|.+.
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g-~~~~~~~i~   49 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHG-EHEGKALIY   49 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSS-TTTTEEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCC-eEEEEEEEE
Confidence            458899999999999999999999999998887754445 554455443

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.71  E-value=0.00011  Score=52.49  Aligned_cols=35  Identities=14%  Similarity=0.092  Sum_probs=31.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEE
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSR  129 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t  129 (261)
                      ..|.|.++||||+.++|+++|+++|+||.+.+-.+
T Consensus         7 v~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~   41 (93)
T d1u8sa2           7 VEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT   41 (93)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHcCCCchhhhccc
Confidence            47889999999999999999999999999877653

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.62  E-value=0.00026  Score=48.95  Aligned_cols=67  Identities=9%  Similarity=0.214  Sum_probs=48.9

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           94 HTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        94 ~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ...+.++..|+||+|++|++.|++.|+||.+-.+..+.+.+..--++.+.  |    +++..+++.+.|.+..
T Consensus         3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~--g----~~~~i~qi~kQl~Kli   69 (78)
T d2fgca2           3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK--G----DDKTIEQIEKQAYKLV   69 (78)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE--E----CTTHHHHHHHHHTTST
T ss_pred             eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE--c----CHHHHHHHHHHHhCCc
Confidence            35789999999999999999999999999988877655554544455554  2    1345566766666543

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.60  E-value=0.00011  Score=49.85  Aligned_cols=46  Identities=17%  Similarity=0.201  Sum_probs=40.4

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEe
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQ  143 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~  143 (261)
                      +|.|..+|+||-|++++++|.+.|+||++..++  ..++++.-+|.++
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~--~~~~~~~~vl~vd   46 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSF--ANNNVANVVIRPS   46 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEE--EETTEEEEEEEES
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEE--cCCCcEEEEEEEC
Confidence            478899999999999999999999999999988  4456888888874

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.57  E-value=0.00021  Score=49.33  Aligned_cols=66  Identities=6%  Similarity=0.114  Sum_probs=50.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ..+.+...|+||.|++|++.|++.|+||.+-.+.-+.+.+..--++.+.  |    +++..+++.+.|.+..
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~--~----~~~~i~qi~kQL~Klv   68 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN--G----PDEIVEQITKQLNKLI   68 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE--E----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEE--C----CHHHHHHHHHHHhCCc
Confidence            3678999999999999999999999999988887544554555556554  1    2456777777777654

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.00031  Score=49.07  Aligned_cols=45  Identities=7%  Similarity=0.200  Sum_probs=36.0

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEE
Q 024865           93 GHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEI  137 (261)
Q Consensus        93 ~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~  137 (261)
                      +...+.+.-+|+||.+++|+++|.++|+||.+-...+...+++++
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~   54 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVV   54 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEE
Confidence            346788888999999999999999999999988777433334543

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.00037  Score=47.91  Aligned_cols=66  Identities=8%  Similarity=0.117  Sum_probs=48.1

Q ss_pred             EEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhh
Q 024865           95 TLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMEL  166 (261)
Q Consensus        95 t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L  166 (261)
                      ..+.++..|+||+|++|+++|++.|+||.+-.+.-+.+.+..--++.+.  |    +++..+++.+.|.+..
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~--~----~~~~i~qi~kQL~Kli   67 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV--G----DEKVLEQIEKQLHKLV   67 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE--S----CHHHHHHHHHHHHHST
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEE--C----CHHHHHHHHHHHhCCC
Confidence            3688999999999999999999999999987776544443443344333  2    3456777777777654

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.42  E-value=0.00049  Score=47.37  Aligned_cols=41  Identities=17%  Similarity=0.159  Sum_probs=35.3

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeecccee
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDRE  228 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~  228 (261)
                      .+-+.-.||||+|..|+.+|.+.|+||.....++...|..+
T Consensus         5 ~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a   45 (78)
T d1ygya3           5 NLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGA   45 (78)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCE
T ss_pred             EEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeE
Confidence            56778899999999999999999999999888866666553

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.35  E-value=0.00058  Score=46.12  Aligned_cols=45  Identities=20%  Similarity=0.201  Sum_probs=36.6

Q ss_pred             EEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEE
Q 024865           96 LVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIM  142 (261)
Q Consensus        96 ~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V  142 (261)
                      ++.|+..||||.|++++++|.+.|+||.+-.+..  .++..+=-|.|
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~--t~~~~i~Riiv   49 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAE--NADFGILRGIV   49 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE--CSSCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEee--cCCCCEEEEEE
Confidence            6899999999999999999999999999877774  34354444554

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.32  E-value=0.00026  Score=49.14  Aligned_cols=47  Identities=13%  Similarity=0.249  Sum_probs=36.7

Q ss_pred             EeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCC
Q 024865          192 SGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGL  242 (261)
Q Consensus       192 ~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~  242 (261)
                      ...|+||-|+++-..|+++|||+  .+|..+-...+-++ |.||| |-+|.
T Consensus         8 ~~~d~pGaL~~vL~~F~~~~INL--t~IeSRP~~~~~~~-Y~F~i-d~~g~   54 (80)
T d2qmwa2           8 PMHDKPGLLASVLNTFALFNINL--SWIESRPLKTQLGM-YRFFV-QADSA   54 (80)
T ss_dssp             ESSCCTTHHHHHHHHHHTTTCCE--EEEEEEECSSSTTC-EEEEE-EESCC
T ss_pred             eCCCCCCHHHHHHHHHHHCCCCE--EEEEeeecCCCCce-EEEEE-EEecC
Confidence            34699999999999999999999  88865444455555 57999 44565

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.25  E-value=0.00012  Score=52.91  Aligned_cols=66  Identities=15%  Similarity=0.030  Sum_probs=47.0

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCCCccc-hHHHHHHHHHH
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDGLSVP-RNKIEEGVWKL  256 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g~~l~-~~~~~~~l~~~  256 (261)
                      |.|-+...|+||-|+++-..|+++|||+  .+|..+-....-+. |.||| |.+|+.-. .+.+++.|+++
T Consensus        17 tSl~f~~~~~pGaL~~vL~~f~~~~INL--t~IeSRP~~~~~~~-Y~F~i-d~eg~~~~~i~~~l~~L~~~   83 (97)
T d1phza1          17 ISLIFSLKEEVGALAKVLRLFEENDINL--THIESRPSRLNKDE-YEFFT-YLDKRTKPVLGSIIKSLRND   83 (97)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCT--TSEEEEECSSCTTE-EEEEE-CBCGGGHHHHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHCCCCE--EEEEeeccCCCCce-EEEEE-EcccCChHHHHHHHHHHHHh
Confidence            4566777899999999999999999999  78865444445556 57999 66786321 24455555543

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.24  E-value=0.00024  Score=48.16  Aligned_cols=48  Identities=10%  Similarity=-0.140  Sum_probs=38.0

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCC
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG  239 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~  239 (261)
                      +|.|.-.||||-|++++++|.+.|+||++.-..  ..++++-  -+|.+.|+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~--~~~~~~~--~vl~vdd~   48 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSF--ANNNVAN--VVIRPSNM   48 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEE--EETTEEE--EEEEESCH
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEE--cCCCcEE--EEEEECCH
Confidence            477888999999999999999999999998876  3345652  35777543

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.16  E-value=0.0004  Score=46.94  Aligned_cols=33  Identities=12%  Similarity=0.085  Sum_probs=30.7

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.|...||||.|++|+.+|++.|+||.+-.+.
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~   37 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIA   37 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEe
Confidence            488999999999999999999999999987776

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.23  E-value=0.0047  Score=44.11  Aligned_cols=55  Identities=15%  Similarity=0.248  Sum_probs=40.9

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCe-EEEEEEEecCCC
Q 024865           91 SPGHTLVQIVCQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK  147 (261)
Q Consensus        91 ~~~~t~l~V~~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~-v~D~F~V~~~g~  147 (261)
                      ..+.|.|.+..+|+||-|+++-.+|..+|+|+.  +|.+.+..+. -.=.|||+-+|.
T Consensus        13 ~~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt--~IeSRP~~~~~~~Y~F~id~eg~   68 (97)
T d1phza1          13 QNGAISLIFSLKEEVGALAKVLRLFEENDINLT--HIESRPSRLNKDEYEFFTYLDKR   68 (97)
T ss_dssp             SSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTT--SEEEEECSSCTTEEEEEECBCGG
T ss_pred             CCCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEE--EEEeeccCCCCceEEEEEEcccC
Confidence            346788888889999999999999999999997  6765543212 122488875554

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.0057  Score=42.28  Aligned_cols=33  Identities=12%  Similarity=0.099  Sum_probs=29.2

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+-+.-.|+||.|++|+.+|.+.|+||..-...
T Consensus        13 rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~   45 (84)
T d1sc6a3          13 RLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQ   45 (84)
T ss_dssp             EEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred             EEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccc
Confidence            577778999999999999999999999776665

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=95.45  E-value=0.011  Score=40.44  Aligned_cols=34  Identities=18%  Similarity=0.214  Sum_probs=31.0

Q ss_pred             eeeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          187 NPVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       187 t~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      ..+.+...|+||+|.+|+..|+..|+||.+--.+
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~   37 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVG   37 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEe
Confidence            3688999999999999999999999999887776

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.19  E-value=0.065  Score=36.40  Aligned_cols=45  Identities=29%  Similarity=0.420  Sum_probs=34.1

Q ss_pred             ecCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCe-EEEEEEEecCCC
Q 024865          101 CQDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNC-EIDLFIMQADGK  147 (261)
Q Consensus       101 ~~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~-v~D~F~V~~~g~  147 (261)
                      ..|+||-|+++-.+|+.+|+|+.  +|.+....+. -.=.|+|+-+|.
T Consensus         9 ~~d~pGaL~~vL~~F~~~~INLt--~IeSRP~~~~~~~Y~F~id~~g~   54 (80)
T d2qmwa2           9 MHDKPGLLASVLNTFALFNINLS--WIESRPLKTQLGMYRFFVQADSA   54 (80)
T ss_dssp             SSCCTTHHHHHHHHHHTTTCCEE--EEEEEECSSSTTCEEEEEEESCC
T ss_pred             CCCCCCHHHHHHHHHHHCCCCEE--EEEeeecCCCCceEEEEEEEecC
Confidence            46999999999999999999998  7776554322 223488885564

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=94.53  E-value=0.011  Score=40.24  Aligned_cols=33  Identities=9%  Similarity=-0.014  Sum_probs=30.7

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.+...|+||+|++|+..|+..|+||.+-..+
T Consensus         4 tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~   36 (77)
T d2pc6a2           4 IISLLMENEAGALSRVAGLFSARGYNIESLSVA   36 (77)
T ss_dssp             EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEE
T ss_pred             EEEEEEECCccHHHHHHHHHhccCcceEEEEEe
Confidence            578899999999999999999999999888876

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.015  Score=39.46  Aligned_cols=33  Identities=6%  Similarity=-0.075  Sum_probs=30.5

Q ss_pred             eeEEEeCCcccHHHHHHHHHHhCCceEEEEEEe
Q 024865          188 PVELSGKGRPLVFHDITLALKMLDICIFSAEIG  220 (261)
Q Consensus       188 ~iev~~~DRpGLL~dI~~~l~~~~l~I~~AkI~  220 (261)
                      .+.+...|+||+|++|+..|+..|+||.+-..+
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~   35 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVA   35 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEE
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEc
Confidence            578899999999999999999999999888776

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.67  E-value=0.91  Score=31.06  Aligned_cols=35  Identities=17%  Similarity=0.352  Sum_probs=30.6

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHHCCceEEEEEEEE
Q 024865           93 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSR  129 (261)
Q Consensus        93 ~~t~l~V~~---~DrpGLla~I~~vl~~~~l~I~~AkI~t  129 (261)
                      +.+.+.|.+   +++||.++++..+|+++|+||.  -|.+
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~--~Is~   49 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVD--VVAT   49 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEE--EEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEE--EEEe
Confidence            578899986   5999999999999999999999  4554

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.49  E-value=0.84  Score=31.25  Aligned_cols=47  Identities=11%  Similarity=0.161  Sum_probs=33.6

Q ss_pred             eeeEEEe---CCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCCCC
Q 024865          187 NPVELSG---KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEGDG  241 (261)
Q Consensus       187 t~iev~~---~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~~g  241 (261)
                      +.+.|.+   .++||.+++|..+|++.|+||..---+     |.  .+ .|.+.+.+.
T Consensus        14 a~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~S-----e~--~i-s~~v~~~~~   63 (91)
T d2cdqa2          14 TMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATS-----EV--SI-SLTLDPSKL   63 (91)
T ss_dssp             EEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEE-----TT--EE-EEEECCGGG
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEec-----CC--eE-EEEEchhHH
Confidence            3677776   599999999999999999999544322     22  33 577744433

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=86.80  E-value=0.66  Score=32.37  Aligned_cols=46  Identities=15%  Similarity=0.188  Sum_probs=33.9

Q ss_pred             eeEEEe---CCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCC
Q 024865          188 PVELSG---KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG  239 (261)
Q Consensus       188 ~iev~~---~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~  239 (261)
                      .|.|.+   .++||++++|..+|++.|+||..  |. +...|.  ++ .|.|...
T Consensus        17 ~IsivG~~m~~~~Gi~arif~~La~~~InV~m--Is-Q~~Se~--~I-sf~V~~~   65 (100)
T d2hmfa3          17 LINIFGAGMVGVSGTAARIFKALGEEEVNVIL--IS-QGSSET--NI-SLVVSEE   65 (100)
T ss_dssp             EEEEEECSSSCHHHHHHHHHHHHHHTTCCEEE--EE-ECCTTC--CE-EEEECST
T ss_pred             EEEEECCCCCCCcchHHHHHHHHHHcCCCHHH--ee-ccCCcc--eE-EEEEeHH
Confidence            688877   69999999999999999999954  32 122333  44 6888444

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=84.28  E-value=3  Score=26.55  Aligned_cols=28  Identities=14%  Similarity=0.364  Sum_probs=24.8

Q ss_pred             EEEEEe---cCCccHHHHHHHHHHHCCceEE
Q 024865           96 LVQIVC---QDHKGLLYDIMRTLKDYNIQVS  123 (261)
Q Consensus        96 ~l~V~~---~DrpGLla~I~~vl~~~~l~I~  123 (261)
                      .|.+.+   +++||+.+++..+|.+.|+||.
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~   33 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIK   33 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCC
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChH
Confidence            456665   6999999999999999999998

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=83.83  E-value=2.2  Score=29.44  Aligned_cols=63  Identities=14%  Similarity=0.130  Sum_probs=42.3

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHHCCceEEEEEEEEeeCCCeEEEEEEEecCCCCCCChhhHHHHHHHHHHhhc
Q 024865           93 GHTLVQIVC---QDHKGLLYDIMRTLKDYNIQVSYGRFSRRQRGNCEIDLFIMQADGKKIVDPSKQNGLSSRLWMELL  167 (261)
Q Consensus        93 ~~t~l~V~~---~DrpGLla~I~~vl~~~~l~I~~AkI~t~t~g~~v~D~F~V~~~g~~l~~~~~~~~l~~~L~~~L~  167 (261)
                      +.+.|.|.+   +++||+.+++..+|+++|+||.-  |..+ ..+ .-=+|.|.        +...++..+.|.+.+.
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~m--IsQ~-~Se-~~Isf~V~--------~~d~~~a~~~L~~~f~   79 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVIL--ISQG-SSE-TNISLVVS--------EEDVDKALKALKREFG   79 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEE--EEEC-CTT-CCEEEEEC--------STTHHHHHHHHHHHHC
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHH--eecc-CCc-ceEEEEEe--------HHHHHHHHHHHHHHHH
Confidence            568899987   79999999999999999999983  4421 222 22246664        1233444556666653

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=81.67  E-value=0.55  Score=30.32  Aligned_cols=46  Identities=17%  Similarity=0.223  Sum_probs=32.5

Q ss_pred             eeEEEe---CCcccHHHHHHHHHHhCCceEEEEEEeeeeccceeEEEEEEEEeCC
Q 024865          188 PVELSG---KGRPLVFHDITLALKMLDICIFSAEIGRHMIGDREWEVYRVLLDEG  239 (261)
Q Consensus       188 ~iev~~---~DRpGLL~dI~~~l~~~~l~I~~AkI~t~t~ger~~dv~~F~i~~~  239 (261)
                      .+.|.+   .++||+.+++..+|.+.|+||+.-.-++   .|.  .+ .|.|.+.
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~---Se~--~I-s~~V~~~   51 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGS---SEV--NI-SFVIDEK   51 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESS---CSS--EE-EEEEEGG
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecC---ccc--eE-EEEEeHH
Confidence            466666   5999999999999999999995443321   121  33 5878555