Citrus Sinensis ID: 024866

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-
Protein Sequence
MFAIGWFNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWNRLQWEAEATQIAFRSCFQPYS
Secondary Structure (PSIPRED)
ccccccccccccccccEEEccccccccccccccccccEEEEEcccHHHHHHHccHHHHccccEEEEEEccccccccccccccccccccEEEEcccccccEEEEccccccccccccccccccEEEEEEccccccccccccccccccEEEEEccccccEEcccccccccccccccccccccccEEEcccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEEHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHHHHHHHHccEEEccHHHHHHHHccHHHHHHHHHHEHHccccccccccHcHcHcHHcccEEEEEcccccEEEEEccccccccccccccccccEEEEEEccccHHccHHHHEcccccEEEEccHHHHHHHHccccccccccccccccccHHcEEEEHcccHHHHHHHcccccccccEEEEEEcccccccccccccccccccEEEEccHHHHHHcccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mfaigwfnfheaseesvlfgGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLrlvrdtpsiidaTAFADLNHLnelyifkgieleelKIDYTEIVRKrrepfvfrSLHRVIIgechklkdvtflvfapnlkslrlfdcGAMEEIISvgkiaetpemmghispfenlqsldlddlphlksifwkplpftHLKKMAVLMCdqlrkppldsnsakeRKFVIRGYTGWWNRLQWEAEATQIAFRSCFQPYS
Flexible Loop (DISEMBL)
MFAIGWFNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIfkgieleeLKIDYTEIVRKRREPFVFRSLHRVIIgechklkdvTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLrkppldsnsakerKFVIRGYTGWWNRLQWEAEATQIAFRSCFQPYS
Low Complexity Region (SEG)
MFAIGWFNFHEASEESvlfgggevlvqellglkylevleltlGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWNRLQWEAEATQIAFRSCFQPYS
Disordered region (IsUnstruct)
*FAIGWFNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLR***********RKFVIRGYTGWWNRLQWEAEATQIAFRSCF****
Disordered Region (DISOPRED)
************SEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGK**********ISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP************IRGYTGWWNRLQWEAEATQIAFRSCFQPY*
Disordered Region (DISEMBL)
MFAIGWFNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWNRLQWEAEATQIAFRSCFQPYS
Disordered Region (DISPRO)
*F*IGWFNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKI*******GHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWNRLQWEAEATQIAFRSCFQ***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFAIGWFNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWNRLQWEAEATQIAFRSCFQPYS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	261	2.2.26 [Sep-21-2011]
O64973	889	Disease resistance protei	yes	no	0.854	0.250	0.367	1e-25
Q8RXS5	888	Probable disease resistan	no	no	0.800	0.235	0.340	4e-24
P60838	894	Probable disease resistan	no	no	0.812	0.237	0.348	6e-24
Q9C8T9	898	Putative disease resistan	no	no	0.827	0.240	0.356	6e-23
O23317	719	Probable disease resistan	no	no	0.781	0.283	0.341	4e-22
P60839	884	Probable disease resistan	no	no	0.754	0.222	0.353	5e-22
Q8L3R3	885	Disease resistance protei	no	no	0.513	0.151	0.460	8e-22
Q9FLB4	874	Putative disease resistan	no	no	0.858	0.256	0.343	1e-21
Q9SH22	884	Probable disease resistan	no	no	0.816	0.240	0.364	2e-21
Q9SI85	893	Probable disease resistan	no	no	0.819	0.239	0.366	2e-21

>sp|O64973|RPS5_ARATH Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/234 (36%), Positives = 127/234 (54%), Gaps = 11/234 (4%)

Query: 25  LVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADL 84
           LV+EL  L++LEV+ L + S    + LL S +L  CI+ +  + +++    +       +
Sbjct: 651 LVKELQLLEHLEVITLDISSSLVAEPLLCSQRLVECIKEVDFKYLKEES--VRVLTLPTM 708

Query: 85  NHLNELYIFKGIELEELKIDYTEIVRKR-REPFV--FRSLHRVIIGECHKLKDVTFLVFA 141
            +L +L I K   + E+KI+ T     R + P    F +L RV I +CH LKD+T+L+FA
Sbjct: 709 GNLRKLGI-KRCGMREIKIERTTSSSSRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFA 767

Query: 142 PNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPF 201
           PNL  L +     +E+IIS  K     E    I PF  L++L L +L  LK I+ K L F
Sbjct: 768 PNLTFLEVGFSKEVEDIISEEK---AEEHSATIVPFRKLETLHLFELRGLKRIYAKALHF 824

Query: 202 THLKKMAVLMCDQLRKPPLDSNS--AKERKFVIRGYTGWWNRLQWEAEATQIAF 253
             LK + V  C++LRK PLDS S  A E   +  G   W  R++WE +ATQ+ F
Sbjct: 825 PCLKVIHVEKCEKLRKLPLDSKSGIAGEELVIYYGEREWIERVEWEDQATQLRF 878

Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. Also confers resistance against Hyaloperonospora parasitica (downy mildew). Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Requires PBS1 to trigger the defense reaction against avrPphB. Probably triggers the defense mechanism when PBS1 is cleaved by avrPphB, suggesting that it detects indirectly the protease activity of avrPphB, and possibly binds to the cleaved RPS5.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXS5|DRL40_ARATH Probable disease resistance protein At5g63020 OS=Arabidopsis thaliana GN=At5g63020 PE=2 SV=2

 Score =  111 bits (278), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 117/220 (53%), Gaps = 11/220 (5%)

Query: 37  VLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGI 96
            L +TLG    L+  LS+ +L SC R+L++  +    S+I   A  D   L EL+ F   
Sbjct: 657 TLTITLGLASILEQFLSNQRLASCTRALRIENLNPQSSVISFVATMD--SLQELH-FADS 713

Query: 97  ELEELKIDYTEIVRKRREPFV---FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCG 153
           ++ E+K+   E V     P     F +L +V +  C +L+D+T+L+FAPNL  LR+    
Sbjct: 714 DIWEIKVKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISAS 773

Query: 154 AMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD 213
            ++E+I+  K  +      ++ PF+ L+ L L+++  LK I   PLPF  L+K+ V  C 
Sbjct: 774 DLKEVINKEKAEQQ-----NLIPFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCS 828

Query: 214 QLRKPPLDSNSAKERKFVIRGYTGWWNRLQWEAEATQIAF 253
           +LRK PL+  S      VI  +  W   L+WE EAT+  F
Sbjct: 829 ELRKLPLNFTSVPRGDLVIEAHKKWIEILEWEDEATKARF 868

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60838|DRL1_ARATH Probable disease resistance protein At1g12280 OS=Arabidopsis thaliana GN=At1g12280 PE=3 SV=1

 Score =  111 bits (277), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 78/224 (34%), Positives = 126/224 (56%), Gaps = 12/224 (5%)

Query: 40  LTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELE 99
           +++ S   ++ LL++ +L  C++ L LR V++  S        D+++LN++ I K   + 
Sbjct: 666 ISIKSSLVVEKLLNAPRLVKCLQILVLRGVQEESS--GVLTLPDMDNLNKVIIRK-CGMC 722

Query: 100 ELKIDYTEI-VRKRREPFV--FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAME 156
           E+KI+   + +   R P      +L  V I  C  LKD+T+L+FAPNL SL + D   +E
Sbjct: 723 EIKIERKTLSLSSNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVE 782

Query: 157 EIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLR 216
            II+     E    M  I PF+ L+SL L +L  L+SI+W+PL F  LK + +  C +LR
Sbjct: 783 GIIN----QEKAMTMSGIIPFQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPELR 838

Query: 217 KPPLDSNSA-KERKFVIR-GYTGWWNRLQWEAEATQIAFRSCFQ 258
           K PLDS  A ++ + VI+     W  R++W+ EAT++ F   F+
Sbjct: 839 KLPLDSEIAIRDEELVIKYQEEEWLERVEWDNEATRLRFLPFFK 882

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C8T9|DRL19_ARATH Putative disease resistance protein At1g63350 OS=Arabidopsis thaliana GN=At1g63350 PE=2 SV=1

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/244 (35%), Positives = 124/244 (50%), Gaps = 28/244 (11%)

Query: 26  VQELLGLKYLEVL-----ELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATA 80
           V+EL  L++LEVL     + TLG+ Q     LSS++L SCIR L++    +        +
Sbjct: 650 VKELEALEHLEVLTTTIDDCTLGTDQ----FLSSHRLMSCIRFLKISNNSNRNRNSSRIS 705

Query: 81  F-ADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLV 139
               ++ L E  I +     E+K+              F SL  V +  C +L+++TFL+
Sbjct: 706 LPVTMDRLQEFTI-EHCHTSEIKMGRI---------CSFSSLIEVNLSNCRRLRELTFLM 755

Query: 140 FAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPL 199
           FAPNLK L +     +E+II+  K A   E  G I PF  L  L L +L  LK+I+W PL
Sbjct: 756 FAPNLKRLHVVSSNQLEDIINKEK-AHDGEKSG-IVPFPKLNELHLYNLRELKNIYWSPL 813

Query: 200 PFTHLKKMAVLMCDQLRKPPLDSNSAKERK---FVIRGYTGWWNRLQWEAEATQIAF--- 253
           PF  L+K+ V+ C  L+K PLDS S K       +      W  R++WE EAT+  F   
Sbjct: 814 PFPCLEKINVMGCPNLKKLPLDSKSGKHGGNGLIITHREMEWITRVEWEDEATKTRFLAN 873

Query: 254 RSCF 257
           RS F
Sbjct: 874 RSSF 877

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23317|DRL24_ARATH Probable disease resistance protein At4g14610 OS=Arabidopsis thaliana GN=At4g14610 PE=3 SV=1

 Score =  105 bits (261), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 80/234 (34%), Positives = 116/234 (49%), Gaps = 30/234 (12%)

Query: 43  GSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYI--FKGIELEE 100
           G Y  +  LLS       +++L+L+  +    +  A     L H+  L I  F  +E E 
Sbjct: 484 GEYAGVSKLLS-------LKTLRLQKSKKALDVNSAKELQLLEHIEVLTIDIFSKVEEES 536

Query: 101 LKI-----------------DYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPN 143
            KI                    EI  + R    F SL +V+IG+C  LK++T+L+FAPN
Sbjct: 537 FKILTFPSMCNIRRIGIWKCGMKEIKVEMRTSSCFSSLSKVVIGQCDGLKELTWLLFAPN 596

Query: 144 LKSLRLFDCGAMEEIISVGKIAE-TPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFT 202
           L  L       +E+IIS  K A  T E    I PF+ L+ L L DLP LKSI+W PL F 
Sbjct: 597 LTYLDARFAEQLEDIISEEKAASVTDENASIIIPFQKLECLSLSDLPKLKSIYWSPLSFP 656

Query: 203 HLKKMAVL-MCDQLRKPPLDSNSAKER-KFVIR-GYTGWWNRLQWEAEATQIAF 253
            L ++AV   C +L+K PL+S S     + V++ G   W   ++WE +AT++ F
Sbjct: 657 RLSELAVQEHCPKLKKLPLNSKSGTAGVELVVKYGENKWLEGVEWEDKATELRF 710

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P60839|DRL2_ARATH Probable disease resistance protein At1g12290 OS=Arabidopsis thaliana GN=At1g12290 PE=2 SV=1

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/215 (35%), Positives = 118/215 (54%), Gaps = 18/215 (8%)

Query: 44  SYQALQILLSSNKLKSCIRSLQLR-LVRDTPSIIDATAFADLNHLNELYIFKGIELEELK 102
           S  AL+ LL S++L  C++ + ++ L  ++  I+   +  DL    E++I  G  + ++ 
Sbjct: 672 SSSALEQLLCSHRLVRCLQKVSVKYLDEESVRILTLPSIGDLR---EVFI-GGCGMRDII 727

Query: 103 IDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVG 162
           I+    +        F +L +V+I  C+ LKD+T+L+FAPNL  L +++   +EEIIS  
Sbjct: 728 IERNTSLTSP----CFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNVWNSRQIEEIISQE 783

Query: 163 KIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVL-MCDQLRKPPLD 221
           K +        I PF  L+ L L DLP LKSI+W PLPF  L ++ V   C +L K PLD
Sbjct: 784 KAS-----TADIVPFRKLEYLHLWDLPELKSIYWNPLPFPCLNQINVQNKCRKLTKLPLD 838

Query: 222 SNS---AKERKFVIRGYTGWWNRLQWEAEATQIAF 253
           S S   A E   +  G   W  R++WE +AT++ F
Sbjct: 839 SQSCIVAGEELVIQYGDEEWKERVEWEDKATRLRF 873

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L3R3|RFL1_ARATH Disease resistance protein RFL1 OS=Arabidopsis thaliana GN=RFL1 PE=3 SV=2

 Score =  104 bits (259), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 64/139 (46%), Positives = 85/139 (61%), Gaps = 5/139 (3%)

Query: 118 FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPF 177
           F +L  V I  C  LKD+T+L+FAPNL +LR++ C  +E+IIS  K A   E    I PF
Sbjct: 742 FSNLSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDIISKEKAASVLEK--EILPF 799

Query: 178 ENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVL-MCDQLRKPPLDSNS-AKERKFVIR-G 234
           + L+ L+L  L  LKSI+W  LPF  L+ + +L  C +LRK PLDS S  K  +FVI+  
Sbjct: 800 QKLECLNLYQLSELKSIYWNALPFQRLRCLDILNNCPKLRKLPLDSKSVVKVEEFVIKYK 859

Query: 235 YTGWWNRLQWEAEATQIAF 253
              W  R++WE EATQ  F
Sbjct: 860 EKKWIERVEWEDEATQYRF 878

Disease resistance (R) protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score =  103 bits (257), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/239 (34%), Positives = 128/239 (53%), Gaps = 15/239 (6%)

Query: 25  LVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQL------RLVRDTPSIIDA 78
           LV+++  +K+L +L +TL +   L+I L   +  S    L L      + ++   + I +
Sbjct: 638 LVRQIQAMKHLYLLTITLRNSSGLEIFLGDTRFSSYTEGLTLDEQSYYQSLKVPLATISS 697

Query: 79  TAFADLNHLNELYIFKGIELEELKIDYTEIVRKR-REPFVFRSLHRVIIGECHKLKDVTF 137
           + F ++    + +I K IE+E    + +EIV  R R    F +L +V +  C  LKD+T+
Sbjct: 698 SRFLEIQ---DSHIPK-IEIEGSSSNESEIVGPRVRRDISFINLRKVRLDNCTGLKDLTW 753

Query: 138 LVFAPNLKSLRLFDCGAMEEIISVG---KIAETPEMMGHISPFENLQSLDLDDLPHLKSI 194
           LVFAP+L +L +     +E IIS     ++ +T E+ G I PF  L+ L L +L  LKSI
Sbjct: 754 LVFAPHLATLYVVCLPDIEHIISRSEESRLQKTCELAGVI-PFRELEFLTLRNLGQLKSI 812

Query: 195 FWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWNRLQWEAEATQIAF 253
           +  PL F  LK++ +  C +L K PLDS SA ++  VI     W   LQWE  AT+  F
Sbjct: 813 YRDPLLFGKLKEINIKSCPKLTKLPLDSRSAWKQNVVINAEEEWLQGLQWEDVATKERF 871

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH22|DRL20_ARATH Probable disease resistance protein At1g63360 OS=Arabidopsis thaliana GN=At1g63360 PE=2 SV=1

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/233 (36%), Positives = 124/233 (53%), Gaps = 20/233 (8%)

Query: 26  VQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLN 85
           V+EL  L++LE+L  T+   +A Q  LSS++L S  R L+          I  ++ + LN
Sbjct: 657 VKELETLEHLEILTTTIDP-RAKQ-FLSSHRLLSHSRLLE----------IYGSSVSSLN 704

Query: 86  -HLNELYIFKGIELEELKIDYTEIVRKRREPFV-FRSLHRVIIGECHKLKDVTFLVFAPN 143
            HL  L +    +L E +I    I   +      F SL  V I  C  L+++TFL+FAP 
Sbjct: 705 RHLESLSVSTD-KLREFQIKSCSISEIKMGGICNFLSLVDVNIFNCEGLRELTFLIFAPK 763

Query: 144 LKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTH 203
           ++SL ++    +E+II+  K  E  E    I PF  L  L L DLP LK I+W+PLPF  
Sbjct: 764 IRSLSVWHAKDLEDIINEEKACEGEE--SGILPFPELNFLTLHDLPKLKKIYWRPLPFLC 821

Query: 204 LKKMAVLMCDQLRKPPLDSNSAK--ERKFVIRGY-TGWWNRLQWEAEATQIAF 253
           L+++ +  C  LRK PLDS S K  E   +IR   + W+  ++W  EAT+  F
Sbjct: 822 LEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATKKRF 874

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SI85|DRL14_ARATH Probable disease resistance protein At1g62630 OS=Arabidopsis thaliana GN=At1g62630 PE=3 SV=2

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/232 (36%), Positives = 122/232 (52%), Gaps = 18/232 (7%)

Query: 26  VQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLN 85
           V+EL  L++LE+L  T+   +A Q  LSS++L S  R LQ         I  +  F+   
Sbjct: 659 VKELETLEHLEILTTTIDP-RAKQ-FLSSHRLMSRSRLLQ---------IFGSNIFSPDR 707

Query: 86  HLNELYIFKGIELEELKIDYTEIVRKRREPFV-FRSLHRVIIGECHKLKDVTFLVFAPNL 144
            L  L +    +L E +I    I   +      F SL  V I  C  L+++TFL+FAP L
Sbjct: 708 QLESLSVSTD-KLREFEIMCCSISEIKMGGICNFLSLVDVTIYNCEGLRELTFLIFAPKL 766

Query: 145 KSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHL 204
           +SL + D   +E+II+  K  E  +    I PF  L+ L+LDDLP LK+I+ +PLPF  L
Sbjct: 767 RSLSVVDAKDLEDIINEEKACEGED--SGIVPFPELKYLNLDDLPKLKNIYRRPLPFLCL 824

Query: 205 KKMAVLMCDQLRKPPLDSNSAKE-RKFVIRGY--TGWWNRLQWEAEATQIAF 253
           +K+ +  C  LRK PLDS S K+     I  Y  + W   ++W  EAT+  F
Sbjct: 825 EKITIGECPNLRKLPLDSRSGKQGENGCIIHYKDSRWLKGVKWADEATKKRF 876

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
24461863	889	NBS-LRR type disease resistance protein	0.980	0.287	0.773	1e-105
24461865	892	NBS-LRR type disease resistance protein	0.969	0.283	0.550	3e-69
24461866	890	NBS-LRR type disease resistance protein	0.965	0.283	0.544	4e-69
24461864	899	NBS-LRR type disease resistance protein	0.950	0.275	0.528	8e-64
24461861	890	NBS-LRR type disease resistance protein	0.946	0.277	0.527	8e-55
359482674	991	PREDICTED: probable disease resistance p	0.877	0.231	0.45	9e-47
225442867	893	PREDICTED: probable disease resistance p	0.911	0.266	0.449	2e-45
147866649	350	hypothetical protein VITISV_018478 [Viti	0.938	0.7	0.441	3e-45
359482672	905	PREDICTED: probable disease resistance p	0.938	0.270	0.441	5e-44
147852651	882	hypothetical protein VITISV_017542 [Viti	0.831	0.246	0.405	5e-40

>gi|24461863|gb|AAN62350.1|AF506028_17 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/260 (77%), Positives = 217/260 (83%), Gaps = 4/260 (1%)

Query: 1   MFAIGWFNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSC 60
           MFA G  +  EASE+SVLFGGGEVL+QELLGLKYLEVLELTL S  ALQ+  SSNKLKSC
Sbjct: 633 MFATG-CSHSEASEDSVLFGGGEVLIQELLGLKYLEVLELTLRSSHALQLFFSSNKLKSC 691

Query: 61  IRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRS 120
           IRSL L  VR T SIIDATAFADLNHLNEL I    E+EELKIDYTEIVRKRREPFVF S
Sbjct: 692 IRSLLLDEVRGTKSIIDATAFADLNHLNELRIDSVAEVEELKIDYTEIVRKRREPFVFGS 751

Query: 121 LHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENL 180
           LHRV +G+C KLKD+TFLVFAPNLKSL+L +C AMEEIISVGK AE PE+MGHISPFENL
Sbjct: 752 LHRVTLGQCLKLKDLTFLVFAPNLKSLQLLNCRAMEEIISVGKFAEVPEVMGHISPFENL 811

Query: 181 QSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWN 240
           Q L L DLP LKSI+WKPLPFTHLK+M V  C+QL+K PLDSNSA   KFVIRG    WN
Sbjct: 812 QRLHLFDLPRLKSIYWKPLPFTHLKEMRVHGCNQLKKLPLDSNSA---KFVIRGEAEGWN 868

Query: 241 RLQWEAEATQIAFRSCFQPY 260
           RLQWE +ATQIAFRSCFQPY
Sbjct: 869 RLQWEDDATQIAFRSCFQPY 888

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461865|gb|AAN62352.1|AF506028_19 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 142/258 (55%), Positives = 184/258 (71%), Gaps = 5/258 (1%)

Query: 1   MFAIGWFNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSC 60
           MF      F EASE S+LFGGGE++V+ELLGLK+LEV+ LTL S   LQ  L+S+KL+SC
Sbjct: 638 MFGASHNAFDEASENSILFGGGELIVEELLGLKHLEVITLTLRSSYGLQSFLNSHKLRSC 697

Query: 61  IRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRS 120
            ++L L+  +D+ S+ + +A ADL  LN L I   + LEELK+DY E V++    F FRS
Sbjct: 698 TQALLLQHFKDSTSL-EVSALADLKQLNRLQIANSVILEELKMDYAEEVQQ----FAFRS 752

Query: 121 LHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENL 180
           L+ V I  C +LKD+TFLVFAPNLKS+++  C AMEEI S GK AE PE+M +++PFE L
Sbjct: 753 LNMVEICNCIQLKDLTFLVFAPNLKSIKVGICHAMEEIASEGKFAEVPEVMANLNPFEKL 812

Query: 181 QSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWN 240
           Q+L++    +LKSI+WK LPF HLK M+ L C +L+K PLDSNSAKERK VI G   W  
Sbjct: 813 QNLEVAGARNLKSIYWKSLPFPHLKAMSFLHCKKLKKLPLDSNSAKERKIVISGERNWRE 872

Query: 241 RLQWEAEATQIAFRSCFQ 258
           +LQWE EAT+ AF  CF+
Sbjct: 873 QLQWEDEATRNAFLRCFR 890

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461866|gb|AAN62353.1|AF506028_20 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  267 bits (682), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 140/257 (54%), Positives = 182/257 (70%), Gaps = 5/257 (1%)

Query: 1   MFAIGWFNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSC 60
           MFA     F  ASE+S+LFGGGE++V+ELLGLKYLEV+  TL S   LQ  LSS+KL+SC
Sbjct: 637 MFAASHSAFDRASEDSILFGGGELIVEELLGLKYLEVISFTLRSSHGLQSFLSSHKLRSC 696

Query: 61  IRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRS 120
            R+L L+   D+ S+ + +A ADL  LN L+I +  +LEELK+DYT  V++    FVF S
Sbjct: 697 TRALLLQCFNDSTSL-EVSALADLKQLNRLWITECKKLEELKMDYTREVQQ----FVFHS 751

Query: 121 LHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENL 180
           L +V I  C KLKD+TFLVFAPNL+S+ L  C AMEE++S+GK AE PE++ +++PF  L
Sbjct: 752 LKKVEILACSKLKDLTFLVFAPNLESIELMGCPAMEEMVSMGKFAEVPEVVANLNPFAKL 811

Query: 181 QSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWN 240
           Q+L L    +LKSI+WKPLPF HLK M+   C +L+K PLDSNSA+ER  VI G   WW 
Sbjct: 812 QNLKLFGATNLKSIYWKPLPFPHLKSMSFSHCYKLKKLPLDSNSARERNIVISGTRRWWE 871

Query: 241 RLQWEAEATQIAFRSCF 257
           +L+W  EAT+ AF  CF
Sbjct: 872 QLEWVDEATRNAFLPCF 888

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461864|gb|AAN62351.1|AF506028_18 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  249 bits (636), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 137/259 (52%), Positives = 177/259 (68%), Gaps = 11/259 (4%)

Query: 1   MFAIGWFNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSC 60
           MF +G ++ +    +S LF GG++LV+ L GLK+LEVL LTL + Q LQ +L+S KL+SC
Sbjct: 648 MFGVGDWSPNGKRNDSDLFSGGDLLVEALRGLKHLEVLSLTLNNSQDLQCVLNSEKLRSC 707

Query: 61  IRSLQLR-LVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFR 119
            ++L L    R  P  +D +A A L HLN L+I +  ELEELK+         R+PFVF+
Sbjct: 708 TQALYLHSFKRSEP--LDVSALAGLEHLNRLWIHECEELEELKM--------ARQPFVFQ 757

Query: 120 SLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFEN 179
           SL ++ I  CH+LK++TFL+FAPNLKS+ +  C AMEEIIS  K A+ PE+M  I PF  
Sbjct: 758 SLEKIQIYGCHRLKNLTFLLFAPNLKSIEVSSCFAMEEIISEVKFADFPEVMPIIKPFAQ 817

Query: 180 LQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWW 239
           L SL L  L  LKSI+ +PLPF  L+ + V  CD+LRK PLDSNSAKERK VIRGYT WW
Sbjct: 818 LYSLRLGGLTVLKSIYKRPLPFPCLRDLTVNSCDELRKLPLDSNSAKERKIVIRGYTKWW 877

Query: 240 NRLQWEAEATQIAFRSCFQ 258
            +LQWE + TQ AFR CF+
Sbjct: 878 EQLQWEDQDTQNAFRPCFR 896

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461861|gb|AAN62348.1|AF506028_15 NBS-LRR type disease resistance protein [Citrus trifoliata]

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 136/258 (52%), Positives = 171/258 (66%), Gaps = 11/258 (4%)

Query: 1   MFAIGWFNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSC 60
           MF   +F++     ESVLFGGGE+LV+ELLGLK+LEVL LTLGS +ALQ  L+S+ L+SC
Sbjct: 641 MFGNAYFSYGNYPIESVLFGGGELLVEELLGLKHLEVLSLTLGSSRALQSFLTSHMLRSC 700

Query: 61  IRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRS 120
            R++ L+  + + S+ D +  ADL  L  L I    EL ELKIDY   V++    + F S
Sbjct: 701 TRAMLLQDFQGSTSV-DVSGLADLKRLKRLRISDCYELVELKIDYAGEVQR----YGFHS 755

Query: 121 LHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENL 180
           L    +  C KLKD+T LV  PNLKS+ + DC AMEEIISVG+ A  P      + F  L
Sbjct: 756 LQSFEVNYCSKLKDLTLLVLIPNLKSIEVTDCEAMEEIISVGEFAGNP------NAFAKL 809

Query: 181 QSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWN 240
           Q L + +LP+LKSI+WKPLPF  L+++ V  C +L+K PLDSNSAKE K VIRG   WW 
Sbjct: 810 QYLGIGNLPNLKSIYWKPLPFPCLEELTVSDCYELKKLPLDSNSAKEHKIVIRGAANWWR 869

Query: 241 RLQWEAEATQIAFRSCFQ 258
            LQWE EATQ AF SCFQ
Sbjct: 870 NLQWEDEATQNAFLSCFQ 887

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482674|ref|XP_002281708.2| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  192 bits (489), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 108/240 (45%), Positives = 147/240 (61%), Gaps = 11/240 (4%)

Query: 21  GGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATA 80
           G E LV+EL  LKYL  L +T+ S  A + LLSS+KL+SCI S+ LR    + S+ + T+
Sbjct: 644 GDEALVEELESLKYLHDLGVTITSTSAFKRLLSSDKLRSCISSVCLRNFNGSSSL-NLTS 702

Query: 81  FADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFV----------FRSLHRVIIGECH 130
             ++ +L EL I     LE L ID+    +K  E             F SL  V+I  C 
Sbjct: 703 LCNVKNLCELSISNCGSLENLVIDWAWEGKKTTESNYLNSKVSSHNSFHSLEVVVIESCS 762

Query: 131 KLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPH 190
           +LKD+T++ FAPNLK+L + DC  M+E+I  GK  E+ E   ++SPF  LQ L+LDDLP 
Sbjct: 763 RLKDLTWVAFAPNLKALTIIDCDQMQEVIGTGKCGESAENGENLSPFVKLQVLELDDLPQ 822

Query: 191 LKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWNRLQWEAEATQ 250
           LKSIFWK LPF +L  + V  C  L+K PL++NSAK  + VI G T WWN+++WE E +Q
Sbjct: 823 LKSIFWKALPFIYLNTIYVDSCPLLKKLPLNANSAKGHRIVISGQTEWWNKVEWEDELSQ 882

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442867|ref|XP_002281592.1| PREDICTED: probable disease resistance protein At5g63020-like [Vitis vinifera]

 Score =  188 bits (478), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 112/249 (44%), Positives = 147/249 (59%), Gaps = 11/249 (4%)

Query: 21  GGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATA 80
           G E LV+EL  LKYL  L +T+ S  A + LLSS+KLKSCI  + L     + S+ + T+
Sbjct: 643 GDEALVEELESLKYLHDLGVTITSASAFKRLLSSDKLKSCISGVCLENFNGSSSL-NLTS 701

Query: 81  FADLNHLNELYIFKGIELEELKIDY-------TE---IVRKRREPFVFRSLHRVIIGECH 130
             ++  L  L+I      E+L+ID+       TE   +  K      F +L  + +  C 
Sbjct: 702 LCNVKRLRNLFISNCGSSEDLEIDWAWEGKETTESNYLNSKVSSHSSFHNLSWLRVKRCS 761

Query: 131 KLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPH 190
           +LKD+T+LVFAPNLK L +  C  M+EII  GK  E+ E   ++SPF  LQ L L+DLP 
Sbjct: 762 RLKDLTWLVFAPNLKVLLITSCDQMQEIIGTGKCGESTENGENLSPFVKLQVLTLEDLPQ 821

Query: 191 LKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWNRLQWEAEATQ 250
           LKSIFWK LPF +L  + V  C  L+K PLD+NSAKE + VI G T W+N L WE EAT 
Sbjct: 822 LKSIFWKALPFIYLNTIYVDSCPLLKKLPLDANSAKEHRIVISGQTEWFNELDWENEATH 881

Query: 251 IAFRSCFQP 259
            AF  CF P
Sbjct: 882 NAFLPCFVP 890

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866649|emb|CAN81572.1| hypothetical protein VITISV_018478 [Vitis vinifera]

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/256 (44%), Positives = 152/256 (59%), Gaps = 11/256 (4%)

Query: 14  EESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTP 73
           ++ +L    E LVQEL  LKYL  L +++ S  A + LLSS+K++SCI  L L+    + 
Sbjct: 93  KDGILSDDNEALVQELESLKYLHGLGVSVTSASAFKRLLSSDKIRSCISRLCLKNFNGS- 151

Query: 74  SIIDATAFADLNHLNELYIFKGIELEELKIDY----------TEIVRKRREPFVFRSLHR 123
           S ++ T+ +++  L  LYI     LE+L+ID+            +  K      F SL  
Sbjct: 152 SSLNLTSLSNVKCLLSLYIPNCGSLEDLEIDWAWEGKETTESNSLNSKVSSHNSFHSLSW 211

Query: 124 VIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSL 183
           + +  C +LKD+T+LVFAPNLK L +  C  M+EII  GK  E+ E   ++SPF  LQ L
Sbjct: 212 LGVERCSRLKDLTWLVFAPNLKVLLITSCDQMQEIIGTGKCGESAENGENLSPFAKLQVL 271

Query: 184 DLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWNRLQ 243
            LDDLP LKSIFWK LPF +L  + V  C  L+K PLD+NSAK  + VI G T WWN ++
Sbjct: 272 HLDDLPQLKSIFWKALPFIYLNTIYVDSCPLLKKLPLDANSAKGHRIVISGQTEWWNEVE 331

Query: 244 WEAEATQIAFRSCFQP 259
           WE EATQ AF  CF P
Sbjct: 332 WEDEATQNAFLPCFVP 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482672|ref|XP_003632805.1| PREDICTED: probable disease resistance protein At1g12280-like [Vitis vinifera]

 Score =  183 bits (465), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 113/256 (44%), Positives = 151/256 (58%), Gaps = 11/256 (4%)

Query: 14  EESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTP 73
           ++ +L    E LVQEL  LKYL  L +++ S  A + LLSS KL+ CI  L L+   +  
Sbjct: 648 KDGILSDDNEALVQELESLKYLHGLGVSVKSASAFKRLLSSYKLRICISGLCLKNF-NGS 706

Query: 74  SIIDATAFADLNHLNELYIFKGIELEELKIDYT----EIVR------KRREPFVFRSLHR 123
           S ++ T+ ++   L+ LYI K   LE+L+ID+     E V       K      F SL  
Sbjct: 707 SSLNLTSLSNAKCLSSLYISKCGSLEDLEIDWAGEGKETVESNYLNSKVSSHNSFHSLVW 766

Query: 124 VIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSL 183
           + I  C +LKD+T+LVF PNLK L + DC  M+E+I  GK  E+ E   ++SPF  LQ L
Sbjct: 767 LGIERCSRLKDLTWLVFVPNLKVLTIIDCDQMQEVIGTGKCGESAENGENLSPFVKLQVL 826

Query: 184 DLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWNRLQ 243
           +LDDLP LKSIFWK LPF +L  + V  C  L+K PL +NSAK  + VI G+  WWN ++
Sbjct: 827 ELDDLPQLKSIFWKALPFIYLNTIHVRNCPLLKKLPLSANSAKGNRIVIAGHNKWWNEVE 886

Query: 244 WEAEATQIAFRSCFQP 259
           WE EATQ  F  CF P
Sbjct: 887 WEDEATQNVFLPCFVP 902

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852651|emb|CAN80649.1| hypothetical protein VITISV_017542 [Vitis vinifera]

 Score =  170 bits (431), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 101/249 (40%), Positives = 133/249 (53%), Gaps = 32/249 (12%)

Query: 21  GGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATA 80
           G E LV+EL  LKYL  L +T+ S  A + LLSS+KL+SCI                   
Sbjct: 644 GDEALVEELESLKYLHDLSVTITSTSAFKRLLSSDKLRSCIS------------------ 685

Query: 81  FADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFV----------FRSLHRVIIGECH 130
                 L  L+I     LE+L+ID+    +K  E             F SL  + +  C 
Sbjct: 686 ----RRLRNLFISNCGSLEDLEIDWVGEGKKTVESNYLNSKVSSHNSFHSLEALTVVSCS 741

Query: 131 KLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPH 190
           +LKD+T++ FAPNLK L + DC  M+E+I   K  E+ E   ++ PF  LQ L L  LP 
Sbjct: 742 RLKDLTWVAFAPNLKVLTIIDCDQMQEVIGTRKSDESAENGENLGPFAKLQVLHLVGLPQ 801

Query: 191 LKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWNRLQWEAEATQ 250
           LKSIFWK LP  +L ++ V  C  L+K PL++NSAK  + VI G T WWN ++WE EAT 
Sbjct: 802 LKSIFWKALPLIYLNRIHVRNCPLLKKLPLNANSAKGHRIVISGQTEWWNEVEWEDEATH 861

Query: 251 IAFRSCFQP 259
            AF  CF P
Sbjct: 862 NAFLPCFVP 870

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	261
TAIR|locus:2034770	894	SUMM2 "AT1G12280" [Arabidopsis	0.770	0.224	0.370	1.6e-24
TAIR|locus:2034765	884	AT1G12290 [Arabidopsis thalian	0.770	0.227	0.366	2.4e-23
TAIR|locus:2201996	889	RPS5 "AT1G12220" [Arabidopsis	0.754	0.221	0.375	3.9e-23
TAIR|locus:2166320	888	AT5G63020 [Arabidopsis thalian	0.777	0.228	0.345	5e-23
TAIR|locus:2201986	885	RFL1 "AT1G12210" [Arabidopsis	0.574	0.169	0.436	2.8e-22
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.789	0.230	0.330	7e-21
TAIR|locus:2031356	884	AT1G63360 [Arabidopsis thalian	0.681	0.201	0.379	1.4e-20
TAIR|locus:2031366	898	AT1G63350 "AT1G63350" [Arabido	0.743	0.216	0.356	1.5e-20
TAIR|locus:2171589	948	AT5G47260 [Arabidopsis thalian	0.758	0.208	0.357	4.3e-20
TAIR|locus:2203881	893	AT1G62630 [Arabidopsis thalian	0.524	0.153	0.440	8.3e-20

TAIR|locus:2034770 SUMM2 "AT1G12280" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 79/213 (37%), Positives = 123/213 (57%)

Query:    51 LLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEI-V 109
             LL++ +L  C++ L LR V++  S +      D+++LN++ I K   + E+KI+   + +
Sbjct:   677 LLNAPRLVKCLQILVLRGVQEESSGV--LTLPDMDNLNKVIIRK-CGMCEIKIERKTLSL 733

Query:   110 RKRREPFV--FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAET 167
                R P      +L  V I  C  LKD+T+L+FAPNL SL + D   +E II+  K A T
Sbjct:   734 SSNRSPKTQFLHNLSTVHISSCDGLKDLTWLLFAPNLTSLEVLDSELVEGIINQEK-AMT 792

Query:   168 PEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSA-K 226
                M  I PF+ L+SL L +L  L+SI+W+PL F  LK + +  C +LRK PLDS  A +
Sbjct:   793 ---MSGIIPFQKLESLRLHNLAMLRSIYWQPLSFPCLKTIHITKCPELRKLPLDSEIAIR 849

Query:   227 ERKFVIRGYTG-WWNRLQWEAEATQIAFRSCFQ 258
             + + VI+     W  R++W+ EAT++ F   F+
Sbjct:   850 DEELVIKYQEEEWLERVEWDNEATRLRFLPFFK 882

GO:0006952 "defense response" evidence=IGI;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2034765 AT1G12290 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 2.4e-23, P = 2.4e-23
 Identities = 80/218 (36%), Positives = 123/218 (56%)

Query:    44 SYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKI 103
             S  AL+ LL S++L  C++ + ++ + D  S+   T    +  L E++I  G  + ++ I
Sbjct:   672 SSSALEQLLCSHRLVRCLQKVSVKYL-DEESVRILT-LPSIGDLREVFI-GGCGMRDIII 728

Query:   104 DYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGK 163
             +    +     P  F +L +V+I  C+ LKD+T+L+FAPNL  L +++   +EEIIS  K
Sbjct:   729 ERNTSLTS---P-CFPNLSKVLITGCNGLKDLTWLLFAPNLTHLNVWNSRQIEEIISQEK 784

Query:   164 IAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVL-MCDQLRKPPLDS 222
              A T +++    PF  L+ L L DLP LKSI+W PLPF  L ++ V   C +L K PLDS
Sbjct:   785 -ASTADIV----PFRKLEYLHLWDLPELKSIYWNPLPFPCLNQINVQNKCRKLTKLPLDS 839

Query:   223 NS---AKERKFVIRGYTGWWNRLQWEAEATQIAFR-SC 256
              S   A E   +  G   W  R++WE +AT++ F  SC
Sbjct:   840 QSCIVAGEELVIQYGDEEWKERVEWEDKATRLRFLPSC 877

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2201996 RPS5 "AT1G12220" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 3.9e-23, P = 3.9e-23
 Identities = 78/208 (37%), Positives = 113/208 (54%)

Query:    51 LLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVR 110
             LL S +L  CI+ +  + +++    +       + +L +L I K   + E+KI+ T    
Sbjct:   677 LLCSQRLVECIKEVDFKYLKEES--VRVLTLPTMGNLRKLGI-KRCGMREIKIERTTSSS 733

Query:   111 KR-REPFV--FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAET 167
              R + P    F +L RV I +CH LKD+T+L+FAPNL  L +     +E+IIS  K AE 
Sbjct:   734 SRNKSPTTPCFSNLSRVFIAKCHGLKDLTWLLFAPNLTFLEVGFSKEVEDIISEEK-AE- 791

Query:   168 PEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNS--A 225
              E    I PF  L++L L +L  LK I+ K L F  LK + V  C++LRK PLDS S  A
Sbjct:   792 -EHSATIVPFRKLETLHLFELRGLKRIYAKALHFPCLKVIHVEKCEKLRKLPLDSKSGIA 850

Query:   226 KERKFVIRGYTGWWNRLQWEAEATQIAF 253
              E   +  G   W  R++WE +ATQ+ F
Sbjct:   851 GEELVIYYGEREWIERVEWEDQATQLRF 878

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0006952 "defense response" evidence=IMP;TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0008219 "cell death" evidence=IMP

GO:0038023 "signaling receptor activity" evidence=IMP

GO:0000166 "nucleotide binding" evidence=IMP

GO:0005622 "intracellular" evidence=ISS

TAIR|locus:2166320 AT5G63020 [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 5.0e-23, P = 5.0e-23
 Identities = 74/214 (34%), Positives = 114/214 (53%)

Query:    43 GSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELK 102
             G    L+  LS+ +L SC R+L++  +    S+I   A  D   L EL+ F   ++ E+K
Sbjct:   663 GLASILEQFLSNQRLASCTRALRIENLNPQSSVISFVATMD--SLQELH-FADSDIWEIK 719

Query:   103 IDYTEIVRKRREPFV---FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEII 159
             +   E V     P     F +L +V +  C +L+D+T+L+FAPNL  LR+     ++E+I
Sbjct:   720 VKRNETVLPLHIPTTTTFFPNLSQVSLEFCTRLRDLTWLIFAPNLTVLRVISASDLKEVI 779

Query:   160 SVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP 219
             +  K AE   ++    PF+ L+ L L+++  LK I   PLPF  L+K+ V  C +LRK P
Sbjct:   780 NKEK-AEQQNLI----PFQELKELRLENVQMLKHIHRGPLPFPCLQKILVNGCSELRKLP 834

Query:   220 LDSNSAKERKFVIRGYTGWWNRLQWEAEATQIAF 253
             L+  S      VI  +  W   L+WE EAT+  F
Sbjct:   835 LNFTSVPRGDLVIEAHKKWIEILEWEDEATKARF 868

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2201986 RFL1 "AT1G12210" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 2.8e-22, P = 2.8e-22
 Identities = 69/158 (43%), Positives = 93/158 (58%)

Query:   100 ELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEII 159
             E+ I+ T   +    P  F +L  V I  C  LKD+T+L+FAPNL +LR++ C  +E+II
Sbjct:   725 EIMIEKTPWKKNLTNPN-FSNLSNVRIEGCDGLKDLTWLLFAPNLINLRVWGCKHLEDII 783

Query:   160 SVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLM-CDQLRKP 218
             S  K A   E    I PF+ L+ L+L  L  LKSI+W  LPF  L+ + +L  C +LRK 
Sbjct:   784 SKEKAASVLEK--EILPFQKLECLNLYQLSELKSIYWNALPFQRLRCLDILNNCPKLRKL 841

Query:   219 PLDSNSA-KERKFVIRGYTG--WWNRLQWEAEATQIAF 253
             PLDS S  K  +FVI+ Y    W  R++WE EATQ  F
Sbjct:   842 PLDSKSVVKVEEFVIK-YKEKKWIERVEWEDEATQYRF 878

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009617 "response to bacterium" evidence=ISS

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 7.0e-21, P = 7.0e-21
 Identities = 72/218 (33%), Positives = 115/218 (52%)

Query:    44 SYQALQILLSSNKLKSCIRSLQLR-LVRDTPSIIDATAFADLNHLNELYIFKGIELEELK 102
             S   L+ ++ +  L +C++ + +R L+ D            ++ L  L ++   E+ E++
Sbjct:   668 STMVLEQMIDAGTLMNCMQEVSIRCLIYDQEQDTKLR-LPTMDSLRSLTMWN-CEISEIE 725

Query:   103 IDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVG 162
             I+          P  F +L +VII  C  LKD+T+L+FAPN+  L +     ++E+IS  
Sbjct:   726 IERLTWNTNPTSPCFF-NLSQVIIHVCSSLKDLTWLLFAPNITYLMIEQLEQLQELISHA 784

Query:   163 K---IAETPEMMGH-ISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKP 218
             K   + E  +   H I PF+ LQ L L  LP LKSI+W  L F  L  + V  C +LRK 
Sbjct:   785 KATGVTEEEQQQLHKIIPFQKLQILHLSSLPELKSIYWISLSFPCLSGIYVERCPKLRKL 844

Query:   219 PLDSNSAKE-RKFVIRGY--TGWWNRLQWEAEATQIAF 253
             PLDS +    +KFV++ Y  T W   ++W+ EAT++ F
Sbjct:   845 PLDSKTGTVGKKFVLQ-YKETEWIESVEWKDEATKLHF 881

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031356 AT1G63360 [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.4e-20, P = 1.4e-20
 Identities = 71/187 (37%), Positives = 100/187 (53%)

Query:    76 IDATAFADLN-HLNELYIFKGIELEELKIDYTEIVRKRREPFV-FRSLHRVIIGECHKLK 133
             I  ++ + LN HL  L +    +L E +I    I   +      F SL  V I  C  L+
Sbjct:   695 IYGSSVSSLNRHLESLSVSTD-KLREFQIKSCSISEIKMGGICNFLSLVDVNIFNCEGLR 753

Query:   134 DVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS 193
             ++TFL+FAP ++SL ++    +E+II+  K  E  E  G I PF  L  L L DLP LK 
Sbjct:   754 ELTFLIFAPKIRSLSVWHAKDLEDIINEEKACEGEES-G-ILPFPELNFLTLHDLPKLKK 811

Query:   194 IFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAK--ERKFVIRGYTG-WWNRLQWEAEATQ 250
             I+W+PLPF  L+++ +  C  LRK PLDS S K  E   +IR     W+  ++W  EAT+
Sbjct:   812 IYWRPLPFLCLEEINIRECPNLRKLPLDSTSGKQGENGCIIRNKDSRWFEGVKWADEATK 871

Query:   251 IAFR-SC 256
               F  SC
Sbjct:   872 KRFLPSC 878

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2031366 AT1G63350 "AT1G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 76/213 (35%), Positives = 108/213 (50%)

Query:    52 LSSNKLKSCIRSLQLRLVRDTPSIIDATAF-ADLNHLNELYIFKGIELEELKIDYTEIVR 110
             LSS++L SCIR L++    +        +    ++ L E  I +     E+K+    I  
Sbjct:   677 LSSHRLMSCIRFLKISNNSNRNRNSSRISLPVTMDRLQEFTI-EHCHTSEIKMG--RICS 733

Query:   111 KRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEM 170
                    F SL  V +  C +L+++TFL+FAPNLK L +     +E+II+  K A   E 
Sbjct:   734 -------FSSLIEVNLSNCRRLRELTFLMFAPNLKRLHVVSSNQLEDIINKEK-AHDGEK 785

Query:   171 MGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERK- 229
              G I PF  L  L L +L  LK+I+W PLPF  L+K+ V+ C  L+K PLDS S K    
Sbjct:   786 SG-IVPFPKLNELHLYNLRELKNIYWSPLPFPCLEKINVMGCPNLKKLPLDSKSGKHGGN 844

Query:   230 --FVIRGYTGWWNRLQWEAEATQIAF---RSCF 257
                +      W  R++WE EAT+  F   RS F
Sbjct:   845 GLIITHREMEWITRVEWEDEATKTRFLANRSSF 877

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2171589 AT5G47260 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 4.3e-20, P = 4.3e-20
 Identities = 78/218 (35%), Positives = 116/218 (53%)

Query:    43 GSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLN---HLNELYIFKGIELE 99
             GS   LQ LLS  +L S IR L L    +T +I+D      LN    L EL I  G  + 
Sbjct:   650 GS-SVLQRLLSIQRLASSIRRLHLT---ET-TIVDG-GILSLNAIFSLCELDIL-GCNIL 702

Query:   100 ELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEII 159
             E+ ID+   +++   P  F+++  + I  C  L+D+T+L+ AP L  L + +C  MEE+I
Sbjct:   703 EITIDWRCTIQREIIP-QFQNIRTMTIHRCEYLRDLTWLLLAPCLGELSVSECPQMEEVI 761

Query:   160 SVGKIAETPEMMGHIS--PFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRK 217
             S  K       +G+ S  PF+NL  L LD LP L+SI+W PLPF  L+ + +  C +LR+
Sbjct:   762 SKDKAMAK---LGNTSEQPFQNLTKLVLDGLPKLESIYWTPLPFPVLEYLVIRRCPELRR 818

Query:   218 PPLDSNSA--KERKFVIRGYTGWWNRLQWEAEATQIAF 253
              P +S S    + + +I         ++WE EAT+  F
Sbjct:   819 LPFNSESTIGNQVETIIEEQV--IKIVEWEDEATKQRF 854

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2203881 AT1G62630 [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 8.3e-20, P = 8.3e-20
 Identities = 63/143 (44%), Positives = 85/143 (59%)

Query:   118 FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPF 177
             F SL  V I  C  L+++TFL+FAP L+SL + D   +E+II+  K  E  E  G I PF
Sbjct:   740 FLSLVDVTIYNCEGLRELTFLIFAPKLRSLSVVDAKDLEDIINEEKACEG-EDSG-IVPF 797

Query:   178 ENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKE-RKFVIRGY- 235
               L+ L+LDDLP LK+I+ +PLPF  L+K+ +  C  LRK PLDS S K+     I  Y 
Sbjct:   798 PELKYLNLDDLPKLKNIYRRPLPFLCLEKITIGECPNLRKLPLDSRSGKQGENGCIIHYK 857

Query:   236 -TGWWNRLQWEAEATQIAFR-SC 256
              + W   ++W  EAT+  F  SC
Sbjct:   858 DSRWLKGVKWADEATKKRFLPSC 880

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00034579001 SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (884 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	261
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.43
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.38
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.34
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.73
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.62
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.4
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.27
PRK15386	426	type III secretion protein GogB; Provisional	97.62
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.47
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.29
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.29
PRK15386	426	type III secretion protein GogB; Provisional	97.26
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.26
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.24
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	97.21
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.18
KOG4341	483	consensus F-box protein containing LRR [General fu	97.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.07
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.01
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.99
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.97
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.83
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.76
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.56
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.23
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.21
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.19
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.11
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.98
KOG4341	483	consensus F-box protein containing LRR [General fu	95.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	95.85
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.79
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.72
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.66
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.41
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.35
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.65
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.39
KOG0472	565	consensus Leucine-rich repeat protein [Function un	94.06
KOG0617	264	consensus Ras suppressor protein (contains leucine	93.54
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.39
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	92.77
PLN03150	623	hypothetical protein; Provisional	91.49
PLN03150	623	hypothetical protein; Provisional	90.68
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	90.67
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	89.58
KOG2123	388	consensus Uncharacterized conserved protein [Funct	89.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	88.03
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	87.56
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	86.69
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	86.53
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	85.85
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	85.12
KOG2982	418	consensus Uncharacterized conserved protein [Funct	84.84
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	82.88
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	82.69
KOG0472	565	consensus Leucine-rich repeat protein [Function un	82.07
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	81.48
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	80.74

>PLN03210 Resistant to P

Probab=99.43  E-value=5.7e-13  Score=136.25  Aligned_cols=105  Identities=20%  Similarity=0.302  Sum_probs=75.4

Q ss_pred             cCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccccccc--------ccccCcccCCcccCCcccEEeccC
Q 024866          116 FVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGK--------IAETPEMMGHISPFENLQSLDLDD  187 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~--------~~~~~~~~~~~~~~p~L~~L~L~~  187 (261)
                      +.+++|+.|+|.+|..++.++....+++|++|++++|..+..++....        ....+.+|.++..+++|+.|++.+
T Consensus       799 ~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        799 QNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             hCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCC
Confidence            456667777777777666665444577777777777777665432110        011124556677889999999999


Q ss_pred             CcccccccCCCccCCccceeeeccCccCCCCCC
Q 024866          188 LPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPL  220 (261)
Q Consensus       188 ~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~  220 (261)
                      |++|+.++.....+++|+.+.+.+|++|+.++.
T Consensus       879 C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        879 CNNLQRVSLNISKLKHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             CCCcCccCcccccccCCCeeecCCCcccccccC
Confidence            999999987777889999999999999987764

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.38  E-value=2.2e-13  Score=134.41  Aligned_cols=235  Identities=32%  Similarity=0.467  Sum_probs=178.7

Q ss_pred             eeccccccccCC----CcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccC
Q 024866           10 HEASEESVLFGG----GEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLN   85 (261)
Q Consensus        10 ~~~~~~~~~~~~----~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~   85 (261)
                      |..+++..+...    +...++++++|++|+.++++..+..-++.+....++.++.+.+.+.+|..-...   +++..+.
T Consensus       641 L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~---~~~~~l~  717 (889)
T KOG4658|consen  641 LQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLI---SSLGSLG  717 (889)
T ss_pred             cccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceee---ccccccc
Confidence            555666666555    488999999999999999988776556677777777777777777554332222   5788999


Q ss_pred             CCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccccccccc
Q 024866           86 HLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIA  165 (261)
Q Consensus        86 ~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~  165 (261)
                      +|+.|.|.+|...+... +....   ......|+++..+.+.+|...++++|....|+|+.|.+.+|+.+++++......
T Consensus       718 ~L~~L~i~~~~~~e~~~-~~~~~---~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~  793 (889)
T KOG4658|consen  718 NLEELSILDCGISEIVI-EWEES---LIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKAL  793 (889)
T ss_pred             CcceEEEEcCCCchhhc-ccccc---cchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHh
Confidence            99999999999876432 11110   011013789999999999999999999999999999999999999998755433


Q ss_pred             ccCcccCCcccCCcccEE-eccCCcccccccCCCccCCccceeeeccCccCCCCCCCCcccc---CCceEEEcchhhhhh
Q 024866          166 ETPEMMGHISPFENLQSL-DLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAK---ERKFVIRGYTGWWNR  241 (261)
Q Consensus       166 ~~~~~~~~~~~~p~L~~L-~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~---~~l~~~~~~~~ww~~  241 (261)
                      ..  .......|.++..+ .+.+.+.++.+...+..++.|+.+.|..||+++.+|....+..   ........+.+|=+.
T Consensus       794 ~~--l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~~~~~i~~~~~~~~~~~~~~~~~~  871 (889)
T KOG4658|consen  794 LE--LKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLLSTLTIVGCEEKLKEYPDGEWLEG  871 (889)
T ss_pred             hh--cccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccccccceeccccceeecCCccceee
Confidence            21  11235678888888 6899999999988888899999999999999999998765532   233444457778888


Q ss_pred             cccCchhhhccc
Q 024866          242 LQWEAEATQIAF  253 (261)
Q Consensus       242 ~~w~~~~~~~~~  253 (261)
                      ++|++++++..+
T Consensus       872 v~~~~~~~~~~~  883 (889)
T KOG4658|consen  872 VYWEDELTKLRF  883 (889)
T ss_pred             EEehhhhhhhhc
Confidence            999999998877

>PLN03210 Resistant to P

Probab=99.34  E-value=5.7e-12  Score=129.00  Aligned_cols=49  Identities=18%  Similarity=0.319  Sum_probs=35.4

Q ss_pred             cCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCC
Q 024866          171 MGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPL  220 (261)
Q Consensus       171 ~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~  220 (261)
                      |..+..+++|+.|++.+|.+|+.++... .+++|+.|.+++|.+++.+|.
T Consensus       795 P~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        795 PSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             ChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc
Confidence            4445567778888888888887776533 577888888888887777664

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.73  E-value=2.6e-08  Score=100.68  Aligned_cols=44  Identities=16%  Similarity=0.088  Sum_probs=21.6

Q ss_pred             cCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866          176 PFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP  219 (261)
Q Consensus       176 ~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp  219 (261)
                      .+++|+.|++.++.--..++.....+++|+.|.+++|.--..+|
T Consensus       306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  349 (968)
T PLN00113        306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP  349 (968)
T ss_pred             CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence            34455555554443222222223346667777776665444455

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.62  E-value=1.2e-07  Score=95.90  Aligned_cols=48  Identities=15%  Similarity=0.031  Sum_probs=33.9

Q ss_pred             CCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866          172 GHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP  219 (261)
Q Consensus       172 ~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp  219 (261)
                      ..+..+++|+.|++.++.--..++.....+++|+.|++++|.--..+|
T Consensus       326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p  373 (968)
T PLN00113        326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP  373 (968)
T ss_pred             hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence            345678899999998876434454445567899999998886544444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.40  E-value=6.2e-08  Score=96.26  Aligned_cols=88  Identities=19%  Similarity=0.071  Sum_probs=62.0

Q ss_pred             cceeeeEeeeccccccccCC--CcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccc
Q 024866            2 FAIGWFNFHEASEESVLFGG--GEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDAT   79 (261)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~--~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~   79 (261)
                      .+.+||..||..++.|+++.  .....+.+..|-+|++|++...+..   .++.....++.|.+|++.....+..++  -
T Consensus       562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~---~LP~~l~~Lk~L~~Lnl~~~~~l~~~~--~  636 (889)
T KOG4658|consen  562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS---HLPSGLGNLKKLIYLNLEVTGRLESIP--G  636 (889)
T ss_pred             cCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc---ccchHHHHHHhhheecccccccccccc--c
Confidence            46789999999999999964  2556677777888889988865543   444444445577888888776655552  2


Q ss_pred             cccccCCCCeEEEec
Q 024866           80 AFADLNHLNELYIFK   94 (261)
Q Consensus        80 ~l~~l~~L~~L~i~~   94 (261)
                      ....+++|++|.+..
T Consensus       637 i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  637 ILLELQSLRVLRLPR  651 (889)
T ss_pred             hhhhcccccEEEeec
Confidence            234477888887764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=3.2e-08  Score=85.17  Aligned_cols=178  Identities=16%  Similarity=0.083  Sum_probs=115.6

Q ss_pred             ccccccCCCcc---hhhhhhcccCCceEEEEEcch--HHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCC
Q 024866           14 EESVLFGGGEV---LVQELLGLKYLEVLELTLGSY--QALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLN   88 (261)
Q Consensus        14 ~~~~~~~~~~~---~l~eL~~L~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~   88 (261)
                      .++|++.+...   ...-|.+.++|+.|++..-..  .-...+.+.    ++|+.|+|+.|++++.-.+.-.+.++..|.
T Consensus       188 q~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN----~~L~~lnlsm~sG~t~n~~~ll~~scs~L~  263 (419)
T KOG2120|consen  188 QHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN----SNLVRLNLSMCSGFTENALQLLLSSCSRLD  263 (419)
T ss_pred             HHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc----ccceeeccccccccchhHHHHHHHhhhhHh
Confidence            45666666432   223344456777776664321  112223332    478999999999988776545678899999


Q ss_pred             eEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC---C-ccccCCCCcEEEEecccccccccccccc
Q 024866           89 ELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV---T-FLVFAPNLKSLRLFDCGAMEEIISVGKI  164 (261)
Q Consensus        89 ~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l---~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~  164 (261)
                      +|++++|..-....- .     ...  .--++|+.|+++||.+.-..   . ....+|+|..|++++|..++.-..    
T Consensus       264 ~LNlsWc~l~~~~Vt-v-----~V~--hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~----  331 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVT-V-----AVA--HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF----  331 (419)
T ss_pred             hcCchHhhccchhhh-H-----HHh--hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH----
Confidence            999999975433210 0     000  12248889999998754322   1 225699999999999998875211    


Q ss_pred             cccCcccCCcccCCcccEEeccCCcccccc-cCCCccCCccceeeeccCcc
Q 024866          165 AETPEMMGHISPFENLQSLDLDDLPHLKSI-FWKPLPFTHLKKMAVLMCDQ  214 (261)
Q Consensus       165 ~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~  214 (261)
                             ..+..|+.|++|.++.|..+-.- .......|+|.+|+|.+|-.
T Consensus       332 -------~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  332 -------QEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             -------HHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence                   13456999999999999876321 11244689999999999843

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.62  E-value=0.00034  Score=63.86  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=20.6

Q ss_pred             CcccEEeccCCcccccccCCCccCCccceeeeccC
Q 024866          178 ENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMC  212 (261)
Q Consensus       178 p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C  212 (261)
                      ++|+.|.+.+|..+. ++. .. -++|+.|++..+
T Consensus       156 sSLk~L~Is~c~~i~-LP~-~L-P~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNII-LPE-KL-PESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCccc-Ccc-cc-cccCcEEEeccc
Confidence            468888888887553 221 11 158888888664

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.47  E-value=6.2e-05  Score=61.03  Aligned_cols=102  Identities=21%  Similarity=0.301  Sum_probs=27.1

Q ss_pred             ceeEEEEcCCCCCCccccccccc-ccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC-c
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFA-DLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT-F  137 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~-~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~-~  137 (261)
                      .++.|+|.++ .+..+   ..++ .+.+|+.|+++++. ++.|           .....+++|+.|.+++- +++++. .
T Consensus        20 ~~~~L~L~~n-~I~~I---e~L~~~l~~L~~L~Ls~N~-I~~l-----------~~l~~L~~L~~L~L~~N-~I~~i~~~   82 (175)
T PF14580_consen   20 KLRELNLRGN-QISTI---ENLGATLDKLEVLDLSNNQ-ITKL-----------EGLPGLPRLKTLDLSNN-RISSISEG   82 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS---S-------------TT----TT--EEE--SS----S-CHH
T ss_pred             cccccccccc-ccccc---cchhhhhcCCCEEECCCCC-Cccc-----------cCccChhhhhhcccCCC-CCCccccc
Confidence            3556666654 22333   3344 35667777766654 2222           11234667777777653 566553 1


Q ss_pred             c-ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCc
Q 024866          138 L-VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLP  189 (261)
Q Consensus       138 l-~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  189 (261)
                      + ..+|+|++|++++- .+.++-..          ..+..+|+|+.|++.+-|
T Consensus        83 l~~~lp~L~~L~L~~N-~I~~l~~l----------~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   83 LDKNLPNLQELYLSNN-KISDLNEL----------EPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             HHHH-TT--EEE-TTS----SCCCC----------GGGGG-TT--EEE-TT-G
T ss_pred             hHHhCCcCCEEECcCC-cCCChHHh----------HHHHcCCCcceeeccCCc
Confidence            2 34677777777652 33322110          133457777777777665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.29  E-value=0.0001  Score=64.69  Aligned_cols=37  Identities=19%  Similarity=0.125  Sum_probs=17.4

Q ss_pred             ccceeEEEEcCCCCCCccccccccccc---CCCCeEEEeccC
Q 024866           58 KSCIRSLQLRLVRDTPSIIDATAFADL---NHLNELYIFKGI   96 (261)
Q Consensus        58 ~~~L~~L~L~~c~~l~~l~~~~~l~~l---~~L~~L~i~~c~   96 (261)
                      ..+|+.|++++|.-.....  ..+..+   ++|++|++++|.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~--~~~~~l~~~~~L~~L~ls~~~  119 (319)
T cd00116          80 GCGLQELDLSDNALGPDGC--GVLESLLRSSSLQELKLNNNG  119 (319)
T ss_pred             cCceeEEEccCCCCChhHH--HHHHHHhccCcccEEEeeCCc
Confidence            3456666666654321111  122222   336666666553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.29  E-value=2e-05  Score=73.75  Aligned_cols=64  Identities=20%  Similarity=0.120  Sum_probs=42.4

Q ss_pred             cCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCC-ccCCccceeeeccCc
Q 024866          140 FAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKP-LPFTHLKKMAVLMCD  213 (261)
Q Consensus       140 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C~  213 (261)
                      .+.+|++|++++- .+...+..  +.      ..+..+|+|++|.+.+ .+|+.|+... ..++.||+|++.+-+
T Consensus       363 ~lssL~~LdLr~N-~ls~~IED--aa------~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~Na  427 (873)
T KOG4194|consen  363 GLSSLHKLDLRSN-ELSWCIED--AA------VAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNA  427 (873)
T ss_pred             HhhhhhhhcCcCC-eEEEEEec--ch------hhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCc
Confidence            4677777777762 33333322  11      1345589999999988 5688887654 358999999886653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.26  E-value=0.00055  Score=62.49  Aligned_cols=93  Identities=18%  Similarity=0.360  Sum_probs=62.8

Q ss_pred             cccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccc
Q 024866           80 AFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEII  159 (261)
Q Consensus        80 ~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~  159 (261)
                      .+..+.+++.|+|++| .|+.+           |  ...++|+.|.+.+|..++.++. ...++|++|.|++|..+..++
T Consensus        47 r~~~~~~l~~L~Is~c-~L~sL-----------P--~LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         47 QIEEARASGRLYIKDC-DIESL-----------P--VLPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             HHHHhcCCCEEEeCCC-CCccc-----------C--CCCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCcccccccc
Confidence            3556789999999999 56554           2  2234799999999999877642 235699999999998765432


Q ss_pred             ccccccccCcccCCcccCCcccEEeccC--CcccccccCCCccCCccceeeecc
Q 024866          160 SVGKIAETPEMMGHISPFENLQSLDLDD--LPHLKSIFWKPLPFTHLKKMAVLM  211 (261)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~--~~~L~~i~~~~~~~p~L~~L~i~~  211 (261)
                                        +.|+.|.+..  +..+..++      ++|+.|.+.+
T Consensus       112 ------------------~sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~  141 (426)
T PRK15386        112 ------------------ESVRSLEIKGSATDSIKNVP------NGLTSLSINS  141 (426)
T ss_pred             ------------------cccceEEeCCCCCcccccCc------chHhheeccc
Confidence                              2466666642  33344443      4677887744

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.26  E-value=0.00065  Score=66.97  Aligned_cols=10  Identities=10%  Similarity=0.102  Sum_probs=4.9

Q ss_pred             CCcEEEEecC
Q 024866          120 SLHRVIIGEC  129 (261)
Q Consensus       120 ~L~~L~l~~C  129 (261)
                      +|+.|+++++
T Consensus       284 sL~~L~Ls~N  293 (754)
T PRK15370        284 ELRYLSVYDN  293 (754)
T ss_pred             CCcEEECCCC
Confidence            4555555444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.24  E-value=0.00033  Score=56.78  Aligned_cols=109  Identities=17%  Similarity=0.185  Sum_probs=36.3

Q ss_pred             cccccCCCCeEEEeccCCcceEecccccccccCCCCc-CCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccc
Q 024866           80 AFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPF-VFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEI  158 (261)
Q Consensus        80 ~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~-~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i  158 (261)
                      .+.+...+++|+++|+. +..|           ...+ .+.+|+.|+++++ +++++..+..+++|++|++++ +.++.+
T Consensus        14 ~~~n~~~~~~L~L~~n~-I~~I-----------e~L~~~l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~-N~I~~i   79 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQ-ISTI-----------ENLGATLDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSN-NRISSI   79 (175)
T ss_dssp             ----------------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--S-S---S-
T ss_pred             ccccccccccccccccc-cccc-----------cchhhhhcCCCEEECCCC-CCccccCccChhhhhhcccCC-CCCCcc
Confidence            34455578888888764 3322           1113 5789999999998 788887777899999999987 344443


Q ss_pred             cccccccccCcccCCc-ccCCcccEEeccCC--cccccccCCCccCCccceeeeccCccC
Q 024866          159 ISVGKIAETPEMMGHI-SPFENLQSLDLDDL--PHLKSIFWKPLPFTHLKKMAVLMCDQL  215 (261)
Q Consensus       159 ~~~~~~~~~~~~~~~~-~~~p~L~~L~L~~~--~~L~~i~~~~~~~p~L~~L~i~~C~~L  215 (261)
                      ..            .+ ..+|+|+.|++.+-  .++..+. ....+|+|+.|++.+.|--
T Consensus        80 ~~------------~l~~~lp~L~~L~L~~N~I~~l~~l~-~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   80 SE------------GLDKNLPNLQELYLSNNKISDLNELE-PLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             CH------------HHHHH-TT--EEE-TTS---SCCCCG-GGGG-TT--EEE-TT-GGG
T ss_pred             cc------------chHHhCCcCCEEECcCCcCCChHHhH-HHHcCCCcceeeccCCccc
Confidence            21            11 25899999999752  3333332 1336899999999887754

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=97.21  E-value=0.00083  Score=66.24  Aligned_cols=38  Identities=13%  Similarity=0.202  Sum_probs=22.8

Q ss_pred             CCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccc
Q 024866          118 FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEI  158 (261)
Q Consensus       118 ~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i  158 (261)
                      .++|+.|+++++ +++.++. ...++|++|++++| +++.+
T Consensus       261 ~s~L~~L~Ls~N-~L~~LP~-~l~~sL~~L~Ls~N-~Lt~L  298 (754)
T PRK15370        261 PSALQSLDLFHN-KISCLPE-NLPEELRYLSVYDN-SIRTL  298 (754)
T ss_pred             hCCCCEEECcCC-ccCcccc-ccCCCCcEEECCCC-ccccC
Confidence            347788877643 5665431 22357888888775 45443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.18  E-value=0.00084  Score=44.31  Aligned_cols=36  Identities=25%  Similarity=0.304  Sum_probs=16.8

Q ss_pred             cCCcccEEeccCCcccccccCCC-ccCCccceeeeccC
Q 024866          176 PFENLQSLDLDDLPHLKSIFWKP-LPFTHLKKMAVLMC  212 (261)
Q Consensus       176 ~~p~L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C  212 (261)
                      .+++|++|++.+ .+++.+..+. ..+++|++|.+++|
T Consensus        23 ~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen   23 NLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred             CCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence            445555555553 2244444322 23555555555544

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.12  E-value=5.3e-05  Score=68.18  Aligned_cols=91  Identities=18%  Similarity=0.296  Sum_probs=49.4

Q ss_pred             CCCCCcEEEEecCCCCCCCCc--c-ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866          117 VFRSLHRVIIGECHKLKDVTF--L-VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS  193 (261)
Q Consensus       117 ~~~~L~~L~l~~C~~l~~l~~--l-~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  193 (261)
                      ..++|+.|.+.+|..+.+..+  + .+.++|+.|++.+|....+-.          +.......|.|+.|.++.|...+.
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t----------L~sls~~C~~lr~lslshce~itD  387 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT----------LASLSRNCPRLRVLSLSHCELITD  387 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh----------HhhhccCCchhccCChhhhhhhhh
Confidence            446777777777776665421  2 345666666666665433210          001223456677777766655443


Q ss_pred             c-----cCCCccCCccceeeeccCccCCC
Q 024866          194 I-----FWKPLPFTHLKKMAVLMCDQLRK  217 (261)
Q Consensus       194 i-----~~~~~~~p~L~~L~i~~C~~L~~  217 (261)
                      -     .....+...|+.+.+++||.++.
T Consensus       388 ~gi~~l~~~~c~~~~l~~lEL~n~p~i~d  416 (483)
T KOG4341|consen  388 EGIRHLSSSSCSLEGLEVLELDNCPLITD  416 (483)
T ss_pred             hhhhhhhhccccccccceeeecCCCCchH
Confidence            3     11233455666666666666554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.00044  Score=62.69  Aligned_cols=153  Identities=19%  Similarity=0.243  Sum_probs=75.4

Q ss_pred             hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccC----------
Q 024866           27 QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGI----------   96 (261)
Q Consensus        27 ~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~----------   96 (261)
                      ...+.+.+++.|+++.-=-.+...+.+....+++|+.|+|+.- .+....-...-..+++|+.|.+++|.          
T Consensus       140 ~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~  218 (505)
T KOG3207|consen  140 EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWIL  218 (505)
T ss_pred             hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhhhheEEeccCCCCHHHHHHHH
Confidence            3566667777777764333334444444445567777777752 22211100111346677777777763          


Q ss_pred             ----CcceEeccccc-ccccCCCCcCCCCCcEEEEecCCCCCCC---CccccCCCCcEEEEecccccccccccccccccC
Q 024866           97 ----ELEELKIDYTE-IVRKRREPFVFRSLHRVIIGECHKLKDV---TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETP  168 (261)
Q Consensus        97 ----~Le~l~~~~~~-~~~~~p~~~~~~~L~~L~l~~C~~l~~l---~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~  168 (261)
                          +++.+.+.... ....-.+...+..|+.|+|++-+ +.++   +-.+.||.|.-|.+..|. +.++-.-. +.   
T Consensus       219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d-~~---  292 (505)
T KOG3207|consen  219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPD-VE---  292 (505)
T ss_pred             HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc-ccccccccccccccchhhhhccccC-cchhcCCC-cc---
Confidence                23332222110 00000112456677777777643 3332   234667888877777763 22221110 00   


Q ss_pred             cccCCcccCCcccEEeccC
Q 024866          169 EMMGHISPFENLQSLDLDD  187 (261)
Q Consensus       169 ~~~~~~~~~p~L~~L~L~~  187 (261)
                       .-.....||+|+.|.+..
T Consensus       293 -s~~kt~~f~kL~~L~i~~  310 (505)
T KOG3207|consen  293 -SLDKTHTFPKLEYLNISE  310 (505)
T ss_pred             -chhhhcccccceeeeccc
Confidence             001235688888888754

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.01  E-value=0.002  Score=42.44  Aligned_cols=58  Identities=19%  Similarity=0.174  Sum_probs=29.5

Q ss_pred             ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecC
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGEC  129 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C  129 (261)
                      +|+.|+++++ +++.++. ..+..+++|+.|+++++. +..+..+.         ...+++|++|+++++
T Consensus         2 ~L~~L~l~~n-~l~~i~~-~~f~~l~~L~~L~l~~N~-l~~i~~~~---------f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNN-KLTEIPP-DSFSNLPNLETLDLSNNN-LTSIPPDA---------FSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSS-TESEECT-TTTTTGTTESEEEETSSS-ESEEETTT---------TTTSTTESEEEETSS
T ss_pred             cCcEEECCCC-CCCccCH-HHHcCCCCCCEeEccCCc-cCccCHHH---------HcCCCCCCEEeCcCC
Confidence            4556666665 4555543 455566666666666332 34332111         134555566655554

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.99  E-value=0.00032  Score=61.58  Aligned_cols=171  Identities=19%  Similarity=0.145  Sum_probs=86.6

Q ss_pred             hhhhhcccCCceEEEEEcchH--HHHHHhhCcccccceeEEEEcCCCCCC-ccc-cccccccc-CCCCeEEEeccCCcce
Q 024866           26 VQELLGLKYLEVLELTLGSYQ--ALQILLSSNKLKSCIRSLQLRLVRDTP-SII-DATAFADL-NHLNELYIFKGIELEE  100 (261)
Q Consensus        26 l~eL~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~L~~L~L~~c~~l~-~l~-~~~~l~~l-~~L~~L~i~~c~~Le~  100 (261)
                      ...+..+.+|+.|++......  ....+...... ++|+.|++++|.-.. .+. +...+..+ ++|+.|++++|.- ..
T Consensus        74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~  151 (319)
T cd00116          74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL-EG  151 (319)
T ss_pred             HHHHHhcCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC-Cc
Confidence            345666778888888754321  11112111111 458999999875321 111 11234566 8899999998862 10


Q ss_pred             EecccccccccCCCCcCCCCCcEEEEecCCCCCCC--C----ccccCCCCcEEEEecccccccccccccccccCcccCCc
Q 024866          101 LKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV--T----FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHI  174 (261)
Q Consensus       101 l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l--~----~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~  174 (261)
                      -.....     ......+++|+.|++.+| .+.+-  .    .+..+++|++|++++|. +......       .+...+
T Consensus       152 ~~~~~~-----~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~-------~l~~~~  217 (319)
T cd00116         152 ASCEAL-----AKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGAS-------ALAETL  217 (319)
T ss_pred             hHHHHH-----HHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHH-------HHHHHh
Confidence            000000     000123457888888776 34421  0    11234688888888773 2211100       011123


Q ss_pred             ccCCcccEEeccCCcccccc-----cCC-CccCCccceeeeccCc
Q 024866          175 SPFENLQSLDLDDLPHLKSI-----FWK-PLPFTHLKKMAVLMCD  213 (261)
Q Consensus       175 ~~~p~L~~L~L~~~~~L~~i-----~~~-~~~~p~L~~L~i~~C~  213 (261)
                      ..+++|+.|++++++ +...     ... ....+.|++|.+.+|.
T Consensus       218 ~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~  261 (319)
T cd00116         218 ASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND  261 (319)
T ss_pred             cccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence            346778888887764 3321     100 0023677888877773

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.97  E-value=0.00022  Score=69.63  Aligned_cols=130  Identities=12%  Similarity=0.044  Sum_probs=72.1

Q ss_pred             ceeEEEEcCCCCCCccccccccc-ccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCcc
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFA-DLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFL  138 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~-~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l  138 (261)
                      +|++|+|++-.....-.+ ..++ .+|+|+.|.|.|-.    +..+...     .-..+||+|..|+|+++ +++++..+
T Consensus       123 nL~~LdI~G~~~~s~~W~-~kig~~LPsL~sL~i~~~~----~~~~dF~-----~lc~sFpNL~sLDIS~T-nI~nl~GI  191 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWP-KKIGTMLPSLRSLVISGRQ----FDNDDFS-----QLCASFPNLRSLDISGT-NISNLSGI  191 (699)
T ss_pred             hhhhcCccccchhhccHH-HHHhhhCcccceEEecCce----ecchhHH-----HHhhccCccceeecCCC-CccCcHHH
Confidence            577777776332211111 2233 57788888877632    1111000     00257899999999998 68888777


Q ss_pred             ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccc--c----CCCccCCccceeeecc
Q 024866          139 VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSI--F----WKPLPFTHLKKMAVLM  211 (261)
Q Consensus       139 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i--~----~~~~~~p~L~~L~i~~  211 (261)
                      +.++||+.|.+++..--..    ..-       ..+..+.+|+.|+++.=.+...-  .    .....+|.|+.|+.++
T Consensus       192 S~LknLq~L~mrnLe~e~~----~~l-------~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  192 SRLKNLQVLSMRNLEFESY----QDL-------IDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             hccccHHHHhccCCCCCch----hhH-------HHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            8888888887776532210    000       02345677777777654433221  0    1233467777776653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.83  E-value=0.005  Score=60.90  Aligned_cols=38  Identities=24%  Similarity=0.205  Sum_probs=23.6

Q ss_pred             CcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCC
Q 024866          178 ENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPL  220 (261)
Q Consensus       178 p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~  220 (261)
                      ++|+.|++.+. +++.++.   ..++|+.|+++++. |+.+|.
T Consensus       382 ~~L~~LdLs~N-~Lt~LP~---l~s~L~~LdLS~N~-LssIP~  419 (788)
T PRK15387        382 SGLKELIVSGN-RLTSLPV---LPSELKELMVSGNR-LTSLPM  419 (788)
T ss_pred             cccceEEecCC-cccCCCC---cccCCCEEEccCCc-CCCCCc
Confidence            36777777664 3555543   23577888887763 566663

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.76  E-value=0.0001  Score=68.23  Aligned_cols=40  Identities=23%  Similarity=0.445  Sum_probs=29.4

Q ss_pred             CCCCCcEEEEecCCCCCCCCc---cccCCCCcEEEEecccccc
Q 024866          117 VFRSLHRVIIGECHKLKDVTF---LVFAPNLKSLRLFDCGAME  156 (261)
Q Consensus       117 ~~~~L~~L~l~~C~~l~~l~~---l~~lp~L~~L~i~~C~~L~  156 (261)
                      .+++|+.|.+.+|..+++...   ...+++|++|++++|..+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~  309 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT  309 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence            367888888888887665421   2467889999999888763

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.56  E-value=0.0064  Score=60.16  Aligned_cols=36  Identities=19%  Similarity=0.285  Sum_probs=20.1

Q ss_pred             CCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccc
Q 024866          118 FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEE  157 (261)
Q Consensus       118 ~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~  157 (261)
                      +.+|+.|++.++ +++.++.  .+++|++|+++++ .++.
T Consensus       281 p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N-~L~~  316 (788)
T PRK15387        281 PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN-QLAS  316 (788)
T ss_pred             hhhcCEEECcCC-ccccccc--cccccceeECCCC-cccc
Confidence            345666666665 4554432  3466777777764 4444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.23  E-value=0.005  Score=58.14  Aligned_cols=74  Identities=16%  Similarity=0.152  Sum_probs=48.3

Q ss_pred             ccccCCC--cchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEe
Q 024866           16 SVLFGGG--EVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIF   93 (261)
Q Consensus        16 ~~~~~~~--~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~   93 (261)
                      .|++...  ...+++..++.+|+.+++..-.   +..++......++++.|.|.+ ..+.++.. +.++.++.|+.|+++
T Consensus        83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~---Lt~IP~f~~~sghl~~L~L~~-N~I~sv~s-e~L~~l~alrslDLS  157 (873)
T KOG4194|consen   83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE---LTRIPRFGHESGHLEKLDLRH-NLISSVTS-EELSALPALRSLDLS  157 (873)
T ss_pred             eeccccccccCcHHHHhcCCcceeeeeccch---hhhcccccccccceeEEeeec-cccccccH-HHHHhHhhhhhhhhh
Confidence            5666553  5566777888888888887433   344445555556788888876 34444533 556777788888776


Q ss_pred             c
Q 024866           94 K   94 (261)
Q Consensus        94 ~   94 (261)
                      .
T Consensus       158 r  158 (873)
T KOG4194|consen  158 R  158 (873)
T ss_pred             h
Confidence            4

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.21  E-value=0.00043  Score=65.68  Aligned_cols=50  Identities=22%  Similarity=0.189  Sum_probs=36.3

Q ss_pred             ccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCC
Q 024866          170 MMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPL  220 (261)
Q Consensus       170 ~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~  220 (261)
                      +|+++.-.++|+.|.|.+ ..|..++...--+|-|+.|+++.-|+|-.-|.
T Consensus       331 VPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  331 VPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             CchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence            455666677788887754 45777776555678888888888888876664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.19  E-value=0.00069  Score=58.92  Aligned_cols=145  Identities=19%  Similarity=0.115  Sum_probs=93.5

Q ss_pred             CcchhhhhhcccCCceEEEEEcchHH---HHHHhhCcccccceeEEEEcCCCCCCcccc--cccccccCCCCeEEEeccC
Q 024866           22 GEVLVQELLGLKYLEVLELTLGSYQA---LQILLSSNKLKSCIRSLQLRLVRDTPSIID--ATAFADLNHLNELYIFKGI   96 (261)
Q Consensus        22 ~~~~l~eL~~L~~L~~L~i~~~~~~~---l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~--~~~l~~l~~L~~L~i~~c~   96 (261)
                      +.....++..=.+|+.|+++..++..   +..++.+   .+.|..|+|+.|......-.  ...++  ++|+.|+++||.
T Consensus       223 dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s---cs~L~~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~r  297 (419)
T KOG2120|consen  223 DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS---CSRLDELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYR  297 (419)
T ss_pred             CcHHHHHHhccccceeeccccccccchhHHHHHHHh---hhhHhhcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhH
Confidence            35566677777889999999776422   3334444   34788999999965443311  02233  689999999985


Q ss_pred             CcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC--CccccCCCCcEEEEecccccccccccccccccCcccCCc
Q 024866           97 ELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV--TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHI  174 (261)
Q Consensus        97 ~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~  174 (261)
                      .-  +....-.  ..   ....|+|.+|++++|-.+++=  ..+-.++.|++|.++.|-.+   +...        --.+
T Consensus       298 rn--l~~sh~~--tL---~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i---~p~~--------~~~l  359 (419)
T KOG2120|consen  298 RN--LQKSHLS--TL---VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI---IPET--------LLEL  359 (419)
T ss_pred             hh--hhhhHHH--HH---HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC---ChHH--------eeee
Confidence            31  1111000  00   135789999999999888862  12346999999999999753   2111        0134


Q ss_pred             ccCCcccEEeccCCc
Q 024866          175 SPFENLQSLDLDDLP  189 (261)
Q Consensus       175 ~~~p~L~~L~L~~~~  189 (261)
                      ...|.|.+|++.+|-
T Consensus       360 ~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  360 NSKPSLVYLDVFGCV  374 (419)
T ss_pred             ccCcceEEEEecccc
Confidence            568999999998874

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.11  E-value=0.00045  Score=63.95  Aligned_cols=117  Identities=24%  Similarity=0.202  Sum_probs=56.6

Q ss_pred             hhhhcccCCceEEEEEc-ch-HH-HHHHhhCcccccceeEEEEcCCCCCCccccccccc-ccCCCCeEEEeccCCcceEe
Q 024866           27 QELLGLKYLEVLELTLG-SY-QA-LQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFA-DLNHLNELYIFKGIELEELK  102 (261)
Q Consensus        27 ~eL~~L~~L~~L~i~~~-~~-~~-l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~-~l~~L~~L~i~~c~~Le~l~  102 (261)
                      .-.....+|+.|.+... .. .. ...........++++.|++..|..+....+ ..+. ..++|+.|.+.+|..+..-.
T Consensus       208 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l-~~l~~~c~~L~~L~l~~c~~lt~~g  286 (482)
T KOG1947|consen  208 ALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL-SALASRCPNLETLSLSNCSNLTDEG  286 (482)
T ss_pred             HHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH-HHHHhhCCCcceEccCCCCccchhH
Confidence            44445567777776531 10 00 000011122234667777777765555544 2222 35677777766776532211


Q ss_pred             cccccccccCCCCcCCCCCcEEEEecCCCCCCCC---ccccCCCCcEEEEecc
Q 024866          103 IDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT---FLVFAPNLKSLRLFDC  152 (261)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~---~l~~lp~L~~L~i~~C  152 (261)
                      +...        ...+++|++|++++|..+++-.   ....+++|+.|.+.++
T Consensus       287 l~~i--------~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  287 LVSI--------AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             HHHH--------HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence            1000        1345667777777777664421   1234555555544443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.98  E-value=0.0078  Score=37.09  Aligned_cols=33  Identities=24%  Similarity=0.391  Sum_probs=21.4

Q ss_pred             CCCcEEEEecCCCCCCCCc-cccCCCCcEEEEecc
Q 024866          119 RSLHRVIIGECHKLKDVTF-LVFAPNLKSLRLFDC  152 (261)
Q Consensus       119 ~~L~~L~l~~C~~l~~l~~-l~~lp~L~~L~i~~C  152 (261)
                      ++|++|+++++ ++++++. +..+++|++|+++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence            36677777766 5666665 667777777777776

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=95.89  E-value=0.0018  Score=58.50  Aligned_cols=146  Identities=16%  Similarity=0.205  Sum_probs=91.3

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--  136 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--  136 (261)
                      ..|+.|..++|.+.....+.....+.++|+.|.+.+|..+....+.        +-..+.+.|+.+.+.+|....+-+  
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft--------~l~rn~~~Le~l~~e~~~~~~d~tL~  365 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFT--------MLGRNCPHLERLDLEECGLITDGTLA  365 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhh--------hhhcCChhhhhhcccccceehhhhHh
Confidence            3467777777776554433122345678888888888875433221        112467789999999887666542  


Q ss_pred             -ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCcc
Q 024866          137 -FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQ  214 (261)
Q Consensus       137 -~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~  214 (261)
                       ...++|.|++|.++.|..+.+-..    ..   .....-....|..+.+.+||.++.-.- .-..+++||.+++.+|..
T Consensus       366 sls~~C~~lr~lslshce~itD~gi----~~---l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~  438 (483)
T KOG4341|consen  366 SLSRNCPRLRVLSLSHCELITDEGI----RH---LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD  438 (483)
T ss_pred             hhccCCchhccCChhhhhhhhhhhh----hh---hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence             224689999999999976654310    00   001122356688888899887654321 123567888888888877


Q ss_pred             CCCCC
Q 024866          215 LRKPP  219 (261)
Q Consensus       215 L~~lp  219 (261)
                      ..+=+
T Consensus       439 vtk~~  443 (483)
T KOG4341|consen  439 VTKEA  443 (483)
T ss_pred             hhhhh
Confidence            65533

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=95.85  E-value=0.0014  Score=57.24  Aligned_cols=135  Identities=21%  Similarity=0.217  Sum_probs=80.5

Q ss_pred             hhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecc
Q 024866           25 LVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKID  104 (261)
Q Consensus        25 ~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~  104 (261)
                      ..+++..-+-|+.++++.-.   +..+-.+.++.+.++.|+++. +++..+   .++..+.+|..|++++-. |..+.  
T Consensus       276 ~~~~~dTWq~LtelDLS~N~---I~~iDESvKL~Pkir~L~lS~-N~i~~v---~nLa~L~~L~~LDLS~N~-Ls~~~--  345 (490)
T KOG1259|consen  276 ALVSADTWQELTELDLSGNL---ITQIDESVKLAPKLRRLILSQ-NRIRTV---QNLAELPQLQLLDLSGNL-LAECV--  345 (490)
T ss_pred             eEEecchHhhhhhccccccc---hhhhhhhhhhccceeEEeccc-cceeee---hhhhhcccceEeecccch-hHhhh--
Confidence            34444445555566666433   233344555666788888875 455555   456777888888877532 22210  


Q ss_pred             cccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEe
Q 024866          105 YTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLD  184 (261)
Q Consensus       105 ~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~  184 (261)
                      +-        ..-+.|.|.|.+.+- .+++++.++.+=+|..|++++- +++++-.-          .+++.+|+|+++.
T Consensus       346 Gw--------h~KLGNIKtL~La~N-~iE~LSGL~KLYSLvnLDl~~N-~Ie~ldeV----------~~IG~LPCLE~l~  405 (490)
T KOG1259|consen  346 GW--------HLKLGNIKTLKLAQN-KIETLSGLRKLYSLVNLDLSSN-QIEELDEV----------NHIGNLPCLETLR  405 (490)
T ss_pred             hh--------HhhhcCEeeeehhhh-hHhhhhhhHhhhhheecccccc-chhhHHHh----------cccccccHHHHHh
Confidence            00        023557777777653 5666666777778888888773 33332110          1567788888888


Q ss_pred             ccCCc
Q 024866          185 LDDLP  189 (261)
Q Consensus       185 L~~~~  189 (261)
                      +.+-|
T Consensus       406 L~~NP  410 (490)
T KOG1259|consen  406 LTGNP  410 (490)
T ss_pred             hcCCC
Confidence            87765

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.79  E-value=0.00092  Score=54.92  Aligned_cols=67  Identities=27%  Similarity=0.412  Sum_probs=33.6

Q ss_pred             cCCCCCcEEEEecCCCCCCCC--cc-ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccc
Q 024866          116 FVFRSLHRVIIGECHKLKDVT--FL-VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLK  192 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~--~l-~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~  192 (261)
                      ..+++++.|.+.+|..+-+.-  .+ +-.|+|+.|+|++|+.+++-.-           ..+..|++|+.|.|.+++...
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL-----------~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGL-----------ACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHH-----------HHHHHhhhhHHHHhcCchhhh
Confidence            345555555566665555431  11 2356666666666655443110           133445666666666655544


Q ss_pred             c
Q 024866          193 S  193 (261)
Q Consensus       193 ~  193 (261)
                      .
T Consensus       191 ~  191 (221)
T KOG3864|consen  191 N  191 (221)
T ss_pred             c
Confidence            3

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.72  E-value=0.0071  Score=59.24  Aligned_cols=162  Identities=15%  Similarity=0.079  Sum_probs=79.4

Q ss_pred             cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccC
Q 024866           33 KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKR  112 (261)
Q Consensus        33 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~  112 (261)
                      ++|+.|+|+......-.-..+....++.|++|.+.+-.-... .....-.++++|..|+|+++. +..+    .+     
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~-dF~~lc~sFpNL~sLDIS~Tn-I~nl----~G-----  190 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDND-DFSQLCASFPNLRSLDISGTN-ISNL----SG-----  190 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecch-hHHHHhhccCccceeecCCCC-ccCc----HH-----
Confidence            677777777533221111223334566888888887432111 111223578888888888765 2212    11     


Q ss_pred             CCCcCCCCCcEEEEecCCCCCCCC---ccccCCCCcEEEEecccccccc--cccccccccCcccCCcccCCcccEEeccC
Q 024866          113 REPFVFRSLHRVIIGECHKLKDVT---FLVFAPNLKSLRLFDCGAMEEI--ISVGKIAETPEMMGHISPFENLQSLDLDD  187 (261)
Q Consensus       113 p~~~~~~~L~~L~l~~C~~l~~l~---~l~~lp~L~~L~i~~C~~L~~i--~~~~~~~~~~~~~~~~~~~p~L~~L~L~~  187 (261)
                        .+.+.+|+.|.+++.. +++-.   -+-.|.+|+.|+|+.=.....-  +..-        -+....+|+|+.|+.++
T Consensus       191 --IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qY--------lec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  191 --ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQY--------LECGMVLPELRFLDCSG  259 (699)
T ss_pred             --HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHH--------HHhcccCccccEEecCC
Confidence              1456677777666542 22211   1235778888888764433221  1000        01122377777777764


Q ss_pred             CcccccccC-CCccCCccceeeeccCccCC
Q 024866          188 LPHLKSIFW-KPLPFTHLKKMAVLMCDQLR  216 (261)
Q Consensus       188 ~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~  216 (261)
                      -.-=+.+.. -...-|+|+.+.+.+|....
T Consensus       260 Tdi~~~~le~ll~sH~~L~~i~~~~~~~~~  289 (699)
T KOG3665|consen  260 TDINEEILEELLNSHPNLQQIAALDCLALS  289 (699)
T ss_pred             cchhHHHHHHHHHhCccHhhhhhhhhhccc
Confidence            221000100 01234666666666544433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.66  E-value=0.0016  Score=52.49  Aligned_cols=144  Identities=20%  Similarity=0.180  Sum_probs=80.3

Q ss_pred             ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC-cc
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT-FL  138 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~-~l  138 (261)
                      ++..|.++. ..+..++  +.+..+.+|+.|.+.+-. ++.          .+++..++++|+.|.+. ..++..++ ..
T Consensus        34 ~ITrLtLSH-NKl~~vp--pnia~l~nlevln~~nnq-ie~----------lp~~issl~klr~lnvg-mnrl~~lprgf   98 (264)
T KOG0617|consen   34 NITRLTLSH-NKLTVVP--PNIAELKNLEVLNLSNNQ-IEE----------LPTSISSLPKLRILNVG-MNRLNILPRGF   98 (264)
T ss_pred             hhhhhhccc-CceeecC--CcHHHhhhhhhhhcccch-hhh----------cChhhhhchhhhheecc-hhhhhcCcccc
Confidence            444555554 2333333  466667777777666532 332          22334567777777664 22343332 23


Q ss_pred             ccCCCCcEEEEeccccccc-cccccc------------ccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccc
Q 024866          139 VFAPNLKSLRLFDCGAMEE-IISVGK------------IAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLK  205 (261)
Q Consensus       139 ~~lp~L~~L~i~~C~~L~~-i~~~~~------------~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~  205 (261)
                      +.+|.|+.|++..- ++.+ ......            +...+-+|...+.+.+|+.|.+.+ .+|-+++...+.+..|+
T Consensus        99 gs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lr  176 (264)
T KOG0617|consen   99 GSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLR  176 (264)
T ss_pred             CCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHH
Confidence            56777777777763 2322 111100            000112455667778888888776 34666776677788999


Q ss_pred             eeeeccCccCCCCCCC
Q 024866          206 KMAVLMCDQLRKPPLD  221 (261)
Q Consensus       206 ~L~i~~C~~L~~lp~~  221 (261)
                      +|.|.+- +|+.+|..
T Consensus       177 elhiqgn-rl~vlppe  191 (264)
T KOG0617|consen  177 ELHIQGN-RLTVLPPE  191 (264)
T ss_pred             HHhcccc-eeeecChh
Confidence            9988764 56777744

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.41  E-value=0.0067  Score=55.29  Aligned_cols=37  Identities=27%  Similarity=0.536  Sum_probs=26.6

Q ss_pred             cCCCCCcEEEEecCCCCC--CCCc-cccCCCCcEEEEeccc
Q 024866          116 FVFRSLHRVIIGECHKLK--DVTF-LVFAPNLKSLRLFDCG  153 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~--~l~~-l~~lp~L~~L~i~~C~  153 (261)
                      ..+++||.|.+.+| ++.  ++.+ +..+|+|+.|.+..-+
T Consensus       194 ~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  194 LLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             hhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhccc
Confidence            57899999999999 454  2222 2458889888888753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.35  E-value=0.0014  Score=62.28  Aligned_cols=41  Identities=12%  Similarity=0.216  Sum_probs=23.9

Q ss_pred             ccCCcccCCcccEEeccCCcccccccCCCccCCccceeeecc
Q 024866          170 MMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLM  211 (261)
Q Consensus       170 ~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~  211 (261)
                      +|+.+..+++|+.|.|++ .+++.+......+.+|+.|.++.
T Consensus       237 vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSr  277 (1255)
T KOG0444|consen  237 VPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSR  277 (1255)
T ss_pred             chHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhcccc
Confidence            344555666777777766 33555544444556666666644

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.65  E-value=0.007  Score=49.82  Aligned_cols=68  Identities=12%  Similarity=0.073  Sum_probs=47.0

Q ss_pred             ccceeEEEEcCCCCCCcccccccc-cccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC
Q 024866           58 KSCIRSLQLRLVRDTPSIIDATAF-ADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV  135 (261)
Q Consensus        58 ~~~L~~L~L~~c~~l~~l~~~~~l-~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l  135 (261)
                      +..++.|.+.+|..+....+ .-+ +-.++|+.|+|++|+.+.+-.+         .....|++|+.|.+.+.+.+.++
T Consensus       124 l~~i~~l~l~~ck~~dD~~L-~~l~~~~~~L~~L~lsgC~rIT~~GL---------~~L~~lknLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCL-ERLGGLAPSLQDLDLSGCPRITDGGL---------ACLLKLKNLRRLHLYDLPYVANL  192 (221)
T ss_pred             cchhhhheeccccchhhHHH-HHhcccccchheeeccCCCeechhHH---------HHHHHhhhhHHHHhcCchhhhch
Confidence            34677888888887766654 223 3467889999999987654211         22256888888888888877765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.39  E-value=0.039  Score=33.92  Aligned_cols=39  Identities=28%  Similarity=0.525  Sum_probs=20.8

Q ss_pred             CCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccc
Q 024866          142 PNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSI  194 (261)
Q Consensus       142 p~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i  194 (261)
                      ++|++|+++++ .++++..            .+..+++|+.|++++.+ ++.+
T Consensus         1 ~~L~~L~l~~N-~i~~l~~------------~l~~l~~L~~L~l~~N~-i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPP------------ELSNLPNLETLNLSNNP-ISDI   39 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGG------------HGTTCTTSSEEEETSSC-CSBE
T ss_pred             CcceEEEccCC-CCcccCc------------hHhCCCCCCEEEecCCC-CCCC
Confidence            46777777765 3333321            24456777777776663 4433

...

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.06  E-value=0.013  Score=53.22  Aligned_cols=95  Identities=16%  Similarity=0.093  Sum_probs=62.4

Q ss_pred             cCCCCCcEEEEecCCCCCCCCc-cccCCCCcEEEEecccccccccccc---c------c--cccCccc-CCcccCCcccE
Q 024866          116 FVFRSLHRVIIGECHKLKDVTF-LVFAPNLKSLRLFDCGAMEEIISVG---K------I--AETPEMM-GHISPFENLQS  182 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~~-l~~lp~L~~L~i~~C~~L~~i~~~~---~------~--~~~~~~~-~~~~~~p~L~~  182 (261)
                      ..+++|..|++++- -+.+++. .+.+..|+.|+|+.- ....++..-   +      .  ....+++ .++..+.+|++
T Consensus       432 ~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~t  509 (565)
T KOG0472|consen  432 SQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTT  509 (565)
T ss_pred             Hhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcce
Confidence            46778888888764 2455542 245777999999864 233222100   0      0  0011232 34788999999


Q ss_pred             EeccCCcccccccCCCccCCccceeeeccCc
Q 024866          183 LDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD  213 (261)
Q Consensus       183 L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~  213 (261)
                      |++.+ ..+..++.+.+.+.+|++|.+++-|
T Consensus       510 LDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  510 LDLQN-NDLQQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             eccCC-CchhhCChhhccccceeEEEecCCc
Confidence            99987 4588899888899999999998865

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=93.54  E-value=0.015  Score=47.04  Aligned_cols=84  Identities=15%  Similarity=0.174  Sum_probs=50.3

Q ss_pred             CCCcCCCCCcEEEEecCCCCCCCC-ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccc
Q 024866          113 REPFVFRSLHRVIIGECHKLKDVT-FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHL  191 (261)
Q Consensus       113 p~~~~~~~L~~L~l~~C~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L  191 (261)
                      |....+.+|+.|.+.+- .++.++ .++.+|.|+.|+++ ++.+..            .|.++++||.|+.|++.+- +|
T Consensus        50 pnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvg-mnrl~~------------lprgfgs~p~levldltyn-nl  114 (264)
T KOG0617|consen   50 PNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG-MNRLNI------------LPRGFGSFPALEVLDLTYN-NL  114 (264)
T ss_pred             CcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc-hhhhhc------------CccccCCCchhhhhhcccc-cc
Confidence            44456667777777664 566653 34667777777765 222221            2346778888888888652 33


Q ss_pred             --ccccCCCccCCccceeeecc
Q 024866          192 --KSIFWKPLPFTHLKKMAVLM  211 (261)
Q Consensus       192 --~~i~~~~~~~p~L~~L~i~~  211 (261)
                        ..++...+.+..|+.|++.+
T Consensus       115 ~e~~lpgnff~m~tlralyl~d  136 (264)
T KOG0617|consen  115 NENSLPGNFFYMTTLRALYLGD  136 (264)
T ss_pred             ccccCCcchhHHHHHHHHHhcC
Confidence              23444445566777776654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.39  E-value=0.049  Score=26.32  Aligned_cols=17  Identities=18%  Similarity=0.300  Sum_probs=8.2

Q ss_pred             CccceeeeccCccCCCCC
Q 024866          202 THLKKMAVLMCDQLRKPP  219 (261)
Q Consensus       202 p~L~~L~i~~C~~L~~lp  219 (261)
                      ++|+.|++++|. |+++|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            456666666666 66554

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=92.77  E-value=0.032  Score=55.30  Aligned_cols=20  Identities=40%  Similarity=0.684  Sum_probs=9.9

Q ss_pred             cccCCCCcEEEEecccccccc
Q 024866          138 LVFAPNLKSLRLFDCGAMEEI  158 (261)
Q Consensus       138 l~~lp~L~~L~i~~C~~L~~i  158 (261)
                      +..+|.|+.++|+ |++|.++
T Consensus       448 ~~~l~qL~~lDlS-~N~L~~~  467 (1081)
T KOG0618|consen  448 LAQLPQLKVLDLS-CNNLSEV  467 (1081)
T ss_pred             hhhcCcceEEecc-cchhhhh
Confidence            3445555555554 3444443

>PLN03150 hypothetical protein; Provisional

Probab=91.49  E-value=0.52  Score=45.92  Aligned_cols=91  Identities=12%  Similarity=0.050  Sum_probs=49.1

Q ss_pred             CcCCCCCcEEEEecCCCCC-CCC-ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccc
Q 024866          115 PFVFRSLHRVIIGECHKLK-DVT-FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLK  192 (261)
Q Consensus       115 ~~~~~~L~~L~l~~C~~l~-~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~  192 (261)
                      .+.+++|+.|+++++ .+. .++ .++.+++|+.|+++++. +...           ++..+..+++|+.|++.+..--.
T Consensus       438 i~~L~~L~~L~Ls~N-~l~g~iP~~~~~l~~L~~LdLs~N~-lsg~-----------iP~~l~~L~~L~~L~Ls~N~l~g  504 (623)
T PLN03150        438 ISKLRHLQSINLSGN-SIRGNIPPSLGSITSLEVLDLSYNS-FNGS-----------IPESLGQLTSLRILNLNGNSLSG  504 (623)
T ss_pred             HhCCCCCCEEECCCC-cccCcCChHHhCCCCCCEEECCCCC-CCCC-----------CchHHhcCCCCCEEECcCCcccc
Confidence            356677777777776 343 232 34667778887777753 2211           12244567778888877754222


Q ss_pred             cccCCCcc-CCccceeeeccCccCCCC
Q 024866          193 SIFWKPLP-FTHLKKMAVLMCDQLRKP  218 (261)
Q Consensus       193 ~i~~~~~~-~p~L~~L~i~~C~~L~~l  218 (261)
                      .++..... +.++..+.+.+.+.+-..
T Consensus       505 ~iP~~l~~~~~~~~~l~~~~N~~lc~~  531 (623)
T PLN03150        505 RVPAALGGRLLHRASFNFTDNAGLCGI  531 (623)
T ss_pred             cCChHHhhccccCceEEecCCccccCC
Confidence            33321111 234556666655544433

>PLN03150 hypothetical protein; Provisional

Probab=90.68  E-value=0.4  Score=46.71  Aligned_cols=86  Identities=15%  Similarity=0.113  Sum_probs=59.0

Q ss_pred             CcEEEEecCCCCCCC--CccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccc-cccCC
Q 024866          121 LHRVIIGECHKLKDV--TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLK-SIFWK  197 (261)
Q Consensus       121 L~~L~l~~C~~l~~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~-~i~~~  197 (261)
                      +..|++.++ ++...  ..++.+++|+.|+++++. +...           ++..+..+++|+.|++.+.. +. .++..
T Consensus       420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~-l~g~-----------iP~~~~~l~~L~~LdLs~N~-lsg~iP~~  485 (623)
T PLN03150        420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNS-IRGN-----------IPPSLGSITSLEVLDLSYNS-FNGSIPES  485 (623)
T ss_pred             EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCc-ccCc-----------CChHHhCCCCCCEEECCCCC-CCCCCchH
Confidence            666777765 34432  134678999999999864 3321           22345678999999999875 44 45545


Q ss_pred             CccCCccceeeeccCccCCCCCC
Q 024866          198 PLPFTHLKKMAVLMCDQLRKPPL  220 (261)
Q Consensus       198 ~~~~p~L~~L~i~~C~~L~~lp~  220 (261)
                      ...+++|+.|+++++.--..+|.
T Consensus       486 l~~L~~L~~L~Ls~N~l~g~iP~  508 (623)
T PLN03150        486 LGQLTSLRILNLNGNSLSGRVPA  508 (623)
T ss_pred             HhcCCCCCEEECcCCcccccCCh
Confidence            56789999999999865555664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=90.67  E-value=0.24  Score=44.95  Aligned_cols=135  Identities=19%  Similarity=0.219  Sum_probs=64.2

Q ss_pred             ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCcc-
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFL-  138 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l-  138 (261)
                      +|+.|++++ ..+..++  ..++.+++|+.|.+++++-- .+.          +..+..++|+.|++++. ++.+++.. 
T Consensus       141 nL~~L~l~~-N~i~~l~--~~~~~l~~L~~L~l~~N~l~-~l~----------~~~~~~~~L~~L~ls~N-~i~~l~~~~  205 (394)
T COG4886         141 NLKELDLSD-NKIESLP--SPLRNLPNLKNLDLSFNDLS-DLP----------KLLSNLSNLNNLDLSGN-KISDLPPEI  205 (394)
T ss_pred             hcccccccc-cchhhhh--hhhhccccccccccCCchhh-hhh----------hhhhhhhhhhheeccCC-ccccCchhh
Confidence            566666654 2333331  23566667777776665421 111          11114566666766665 45555433 


Q ss_pred             ccCCCCcEEEEeccccccccccccccc----------ccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceee
Q 024866          139 VFAPNLKSLRLFDCGAMEEIISVGKIA----------ETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMA  208 (261)
Q Consensus       139 ~~lp~L~~L~i~~C~~L~~i~~~~~~~----------~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~  208 (261)
                      ..+.+|++|.+.+-..++.+.......          .....+......++|+.|++.+.. +..+.. ...+.+++.|+
T Consensus       206 ~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~  283 (394)
T COG4886         206 ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSISS-LGSLTNLRELD  283 (394)
T ss_pred             hhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccc-cccccc-ccccCccCEEe
Confidence            233336666665532222111000000          000112344556667777776643 555543 44566777777


Q ss_pred             ecc
Q 024866          209 VLM  211 (261)
Q Consensus       209 i~~  211 (261)
                      +.+
T Consensus       284 ~s~  286 (394)
T COG4886         284 LSG  286 (394)
T ss_pred             ccC
Confidence            765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=89.58  E-value=0.064  Score=52.22  Aligned_cols=35  Identities=26%  Similarity=0.264  Sum_probs=20.3

Q ss_pred             cCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEec
Q 024866          116 FVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFD  151 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~  151 (261)
                      ..++.|+.|+++.- ++.+...+..+++|+.|+|+.
T Consensus       184 qll~ale~LnLshN-k~~~v~~Lr~l~~LkhLDlsy  218 (1096)
T KOG1859|consen  184 QLLPALESLNLSHN-KFTKVDNLRRLPKLKHLDLSY  218 (1096)
T ss_pred             HHHHHhhhhccchh-hhhhhHHHHhccccccccccc
Confidence            34556666666553 444444455567777777764

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.20  E-value=0.027  Score=48.79  Aligned_cols=17  Identities=29%  Similarity=0.489  Sum_probs=11.1

Q ss_pred             cccCCcccEEeccCCcc
Q 024866          174 ISPFENLQSLDLDDLPH  190 (261)
Q Consensus       174 ~~~~p~L~~L~L~~~~~  190 (261)
                      +..+|+|+.|.|..-|-
T Consensus        84 LknlpsLr~LWL~ENPC  100 (388)
T KOG2123|consen   84 LKNLPSLRTLWLDENPC  100 (388)
T ss_pred             HhcCchhhhHhhccCCc
Confidence            45677777777766553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=88.03  E-value=0.5  Score=42.92  Aligned_cols=39  Identities=26%  Similarity=0.331  Sum_probs=21.7

Q ss_pred             CccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCC
Q 024866          136 TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDL  188 (261)
Q Consensus       136 ~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~  188 (261)
                      ..++.+++|++|+++++ .+.++.             .+..+.+|+.|++.+-
T Consensus       249 ~~~~~l~~l~~L~~s~n-~i~~i~-------------~~~~~~~l~~L~~s~n  287 (394)
T COG4886         249 ESIGNLSNLETLDLSNN-QISSIS-------------SLGSLTNLRELDLSGN  287 (394)
T ss_pred             chhccccccceeccccc-cccccc-------------cccccCccCEEeccCc
Confidence            34556677777777664 222222             1344666777777653

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=87.56  E-value=4  Score=30.24  Aligned_cols=10  Identities=20%  Similarity=0.178  Sum_probs=4.1

Q ss_pred             CCCCcEEEEe
Q 024866          118 FRSLHRVIIG  127 (261)
Q Consensus       118 ~~~L~~L~l~  127 (261)
                      +++|+.+.+.
T Consensus        34 ~~~l~~i~~~   43 (129)
T PF13306_consen   34 CTSLKSINFP   43 (129)
T ss_dssp             -TT-SEEEES
T ss_pred             cccccccccc
Confidence            3455555554

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=86.69  E-value=0.16  Score=44.69  Aligned_cols=52  Identities=23%  Similarity=0.114  Sum_probs=26.0

Q ss_pred             cccccccCCCcchhhhhhcc-cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcC
Q 024866           13 SEESVLFGGGEVLVQELLGL-KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRL   68 (261)
Q Consensus        13 ~~~~~~~~~~~~~l~eL~~L-~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~   68 (261)
                      .++.|++...+..++|=..| ++++.|.++--+...+..+    ..+.+|+.|++++
T Consensus       286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nL----a~L~~L~~LDLS~  338 (490)
T KOG1259|consen  286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNL----AELPQLQLLDLSG  338 (490)
T ss_pred             hhhccccccchhhhhhhhhhccceeEEeccccceeeehhh----hhcccceEeeccc
Confidence            44566666666666554443 5666666653332222221    1233556666654

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=86.53  E-value=1.3  Score=36.87  Aligned_cols=35  Identities=26%  Similarity=0.431  Sum_probs=17.5

Q ss_pred             CCCCCcEEEEec--CCCCCCCCccccCCCCcEEEEec
Q 024866          117 VFRSLHRVIIGE--CHKLKDVTFLVFAPNLKSLRLFD  151 (261)
Q Consensus       117 ~~~~L~~L~l~~--C~~l~~l~~l~~lp~L~~L~i~~  151 (261)
                      .+++|+.|.+.+  ...+.++..+..+|.|++|.+-+
T Consensus        86 ~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~  122 (233)
T KOG1644|consen   86 FLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG  122 (233)
T ss_pred             hccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence            355566665553  22333344445556666655544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=85.85  E-value=0.15  Score=50.79  Aligned_cols=21  Identities=29%  Similarity=0.395  Sum_probs=16.0

Q ss_pred             CcchhhhhhcccCCceEEEEE
Q 024866           22 GEVLVQELLGLKYLEVLELTL   42 (261)
Q Consensus        22 ~~~~l~eL~~L~~L~~L~i~~   42 (261)
                      +++.+.-|.+..+||+|++.-
T Consensus       372 td~c~p~l~~~~hLKVLhLsy  392 (1081)
T KOG0618|consen  372 TDSCFPVLVNFKHLKVLHLSY  392 (1081)
T ss_pred             cccchhhhccccceeeeeecc
Confidence            466777788888888888773

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=85.12  E-value=0.58  Score=24.98  Aligned_cols=17  Identities=12%  Similarity=0.440  Sum_probs=12.5

Q ss_pred             CCccceeeeccCccCCC
Q 024866          201 FTHLKKMAVLMCDQLRK  217 (261)
Q Consensus       201 ~p~L~~L~i~~C~~L~~  217 (261)
                      +|+|+.|.+++|++++.
T Consensus         1 c~~L~~L~l~~C~~itD   17 (26)
T smart00367        1 CPNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCCEeCCCCCCCcCH
Confidence            46788888888887654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.84  E-value=0.3  Score=42.92  Aligned_cols=14  Identities=21%  Similarity=0.325  Sum_probs=9.7

Q ss_pred             cCCCCcEEEEeccc
Q 024866          140 FAPNLKSLRLFDCG  153 (261)
Q Consensus       140 ~lp~L~~L~i~~C~  153 (261)
                      .+||+..+.+..|+
T Consensus       197 ~Fpnv~sv~v~e~P  210 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGP  210 (418)
T ss_pred             hcccchheeeecCc
Confidence            47777777777764

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=82.88  E-value=0.69  Score=39.62  Aligned_cols=134  Identities=19%  Similarity=0.125  Sum_probs=74.6

Q ss_pred             eeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecC--CCCCCCCc-
Q 024866           61 IRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGEC--HKLKDVTF-  137 (261)
Q Consensus        61 L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C--~~l~~l~~-  137 (261)
                      .+.+.+.+|.....- +....-.+..|+.|.+.++.... +           .....+++||.|.++.-  .-.-.+.. 
T Consensus        20 v~~l~lD~~~s~~g~-~~gl~d~~~~le~ls~~n~gltt-~-----------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl   86 (260)
T KOG2739|consen   20 VDELFLDNARSGAGK-LGGLTDEFVELELLSVINVGLTT-L-----------TNFPKLPKLKKLELSDNYRRVSGGLEVL   86 (260)
T ss_pred             hhhhhcchhhhcCCC-cccccccccchhhhhhhccceee-c-----------ccCCCcchhhhhcccCCcccccccceeh
Confidence            445555555432110 10122345667777766665322 1           11245789999988643  11122222 


Q ss_pred             cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccc--cC-CCccCCccceeeeccCcc
Q 024866          138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSI--FW-KPLPFTHLKKMAVLMCDQ  214 (261)
Q Consensus       138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i--~~-~~~~~p~L~~L~i~~C~~  214 (261)
                      ...+|+|++|++++- .++.+-..          ..+..+.+|.+|.+.+|+-..--  .. ...-+|+|+.|+-.++..
T Consensus        87 ~e~~P~l~~l~ls~N-ki~~lstl----------~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen   87 AEKAPNLKVLNLSGN-KIKDLSTL----------RPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             hhhCCceeEEeecCC-cccccccc----------chhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence            235699999999873 44432111          13455788899999998755411  11 133578999998888766


Q ss_pred             CCCC
Q 024866          215 LRKP  218 (261)
Q Consensus       215 L~~l  218 (261)
                      =+.-
T Consensus       156 ~Ea~  159 (260)
T KOG2739|consen  156 EEAP  159 (260)
T ss_pred             cccc
Confidence            5543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=82.69  E-value=0.3  Score=41.79  Aligned_cols=90  Identities=17%  Similarity=0.122  Sum_probs=54.6

Q ss_pred             ccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC-
Q 024866           58 KSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT-  136 (261)
Q Consensus        58 ~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~-  136 (261)
                      +++|+.|.++.-..-....+......+++|++|.+++-. ++.+        ..++....+.+|+.|.+.+|.-.. +. 
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~l--------stl~pl~~l~nL~~Ldl~n~~~~~-l~d  133 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDL--------STLRPLKELENLKSLDLFNCSVTN-LDD  133 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccc--------cccchhhhhcchhhhhcccCCccc-ccc
Confidence            347888998864211122221233455899999888642 2211        112333568889999999996433 42 


Q ss_pred             ----ccccCCCCcEEEEeccccccc
Q 024866          137 ----FLVFAPNLKSLRLFDCGAMEE  157 (261)
Q Consensus       137 ----~l~~lp~L~~L~i~~C~~L~~  157 (261)
                          ....+|+|++|+-.++..-+.
T Consensus       134 yre~vf~ll~~L~~LD~~dv~~~Ea  158 (260)
T KOG2739|consen  134 YREKVFLLLPSLKYLDGCDVDGEEA  158 (260)
T ss_pred             HHHHHHHHhhhhccccccccCCccc
Confidence                124589999998888876543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=82.07  E-value=0.3  Score=44.62  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=19.9

Q ss_pred             cCCCCCcEEEEecCCCCCCCC-ccccCCCCcEEEEecc
Q 024866          116 FVFRSLHRVIIGECHKLKDVT-FLVFAPNLKSLRLFDC  152 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~-~l~~lp~L~~L~i~~C  152 (261)
                      .++.+|+.|++.+- .+..++ .++++.||++|.+.|-
T Consensus       502 ~nm~nL~tLDL~nN-dlq~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  502 KNMRNLTTLDLQNN-DLQQIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             hhhhhcceeccCCC-chhhCChhhccccceeEEEecCC
Confidence            44556666666543 333332 3466666666666664

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=81.48  E-value=0.67  Score=23.72  Aligned_cols=18  Identities=17%  Similarity=0.172  Sum_probs=12.7

Q ss_pred             ccceeeeccCccCCCCCCC
Q 024866          203 HLKKMAVLMCDQLRKPPLD  221 (261)
Q Consensus       203 ~L~~L~i~~C~~L~~lp~~  221 (261)
                      +|++|++++| +++.+|..
T Consensus         1 ~L~~Ldls~n-~l~~ip~~   18 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSS   18 (22)
T ss_dssp             TESEEEETSS-EESEEGTT
T ss_pred             CccEEECCCC-cCEeCChh
Confidence            4677777777 77777654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=80.74  E-value=0.89  Score=40.67  Aligned_cols=12  Identities=17%  Similarity=0.047  Sum_probs=6.5

Q ss_pred             CCccceeeeccC
Q 024866          201 FTHLKKMAVLMC  212 (261)
Q Consensus       201 ~p~L~~L~i~~C  212 (261)
                      .|.|++|.+.+|
T Consensus       297 k~dL~kLnLngN  308 (382)
T KOG1909|consen  297 KPDLEKLNLNGN  308 (382)
T ss_pred             chhhHHhcCCcc
Confidence            455555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	261
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 44/188 (23%), Positives = 71/188 (37%), Gaps = 42/188 (22%)

Query: 48  LQIL-LSSNKLKS-------CIRSLQ-LRLVRDTPSIIDATAFADLNHLNELYI------ 92
            + L L  N ++         +  L+ L+L R++   I+  AF  L  LN L +      
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT 136

Query: 93  ------FKG-IELEELKIDYTEIVRKRREPFVF-RSLHRVIIGECHKLKDVTFLVFA--P 142
                 F+   +L EL +    I       F    SL R+ +GE  KL+ ++   F    
Sbjct: 137 VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196

Query: 143 NLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFT 202
           NLK L L  C           I + P    +++P   L+ L++        I  +P  F 
Sbjct: 197 NLKYLNLGMC----------NIKDMP----NLTPLVGLEELEMSGNH-FPEI--RPGSFH 239

Query: 203 HLKKMAVL 210
            L  +  L
Sbjct: 240 GLSSLKKL 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	261
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.52
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.35
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.03
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.02
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.01
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.01
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.01
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.0
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.0
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.0
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.0
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.99
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.99
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.98
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.97
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.91
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.9
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.89
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.88
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.88
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.87
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.84
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.84
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.84
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.84
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.82
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.81
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.78
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.74
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.74
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.74
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.73
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.72
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.72
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.7
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.7
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.7
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.69
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.69
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.68
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.67
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.67
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.67
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.66
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.64
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.63
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.62
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.62
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.62
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.62
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.61
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.58
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.56
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.56
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.56
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.55
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.54
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.53
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.53
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.52
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.51
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.48
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.48
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.47
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.47
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.46
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.46
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.45
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.44
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.44
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.42
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.4
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.37
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.36
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.36
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.34
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.33
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.33
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.32
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.29
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.26
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.23
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.17
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.14
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.1
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.97
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.95
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.92
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.9
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.83
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.78
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.77
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.76
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.69
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.68
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.65
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.45
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.39
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.37
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.22
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.19
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.03
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.96
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.96
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.81
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.75
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.72
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.12
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.95
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.55
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	94.62
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	89.17
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	89.02
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	87.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	85.48
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	82.52
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	80.96

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.52  E-value=2.8e-13  Score=119.15  Aligned_cols=198  Identities=20%  Similarity=0.192  Sum_probs=119.7

Q ss_pred             hhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEec----
Q 024866           28 ELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKI----  103 (261)
Q Consensus        28 eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~----  103 (261)
                      .+..+++|++|++......   .+......+.+|+.|+++++. +..++  ..++.+++|+.|++++|..+..+..    
T Consensus        99 ~l~~l~~L~~L~L~~n~l~---~lp~~~~~l~~L~~L~Ls~n~-l~~lp--~~l~~l~~L~~L~L~~n~~~~~~p~~~~~  172 (328)
T 4fcg_A           99 QAFRLSHLQHMTIDAAGLM---ELPDTMQQFAGLETLTLARNP-LRALP--ASIASLNRLRELSIRACPELTELPEPLAS  172 (328)
T ss_dssp             CGGGGTTCSEEEEESSCCC---CCCSCGGGGTTCSEEEEESCC-CCCCC--GGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred             hhhhCCCCCEEECCCCCcc---chhHHHhccCCCCEEECCCCc-cccCc--HHHhcCcCCCEEECCCCCCccccChhHhh
Confidence            3666778888888744322   222333345678888888763 34443  4677888888888887655443321    


Q ss_pred             ------------------ccccccccCCCCcCCCCCcEEEEecCCCCCCCC-ccccCCCCcEEEEecccccccccccccc
Q 024866          104 ------------------DYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT-FLVFAPNLKSLRLFDCGAMEEIISVGKI  164 (261)
Q Consensus       104 ------------------~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~  164 (261)
                                        ........+...+.+++|+.|+++++ ++..++ .++.+++|++|++++|.....       
T Consensus       173 ~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~-------  244 (328)
T 4fcg_A          173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRN-------  244 (328)
T ss_dssp             EC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCB-------
T ss_pred             ccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhh-------
Confidence                              11100000111234445555555544 233332 233445555555555443322       


Q ss_pred             cccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEEcchhhhhhccc
Q 024866          165 AETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGYTGWWNRLQW  244 (261)
Q Consensus       165 ~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~~~~ww~~~~w  244 (261)
                           ++..+..+++|+.|++.++..+..++.....+++|+.|++++|+.+..+|..... ...++++..+..+...+.+
T Consensus       245 -----~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~-L~~L~~l~l~~~~~~~l~~  318 (328)
T 4fcg_A          245 -----YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ-LPANCIILVPPHLQAQLDQ  318 (328)
T ss_dssp             -----CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGG-SCTTCEEECCGGGSCC---
T ss_pred             -----hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhh-ccCceEEeCCHHHHHHHhh
Confidence                 2345677899999999999988888877778999999999999999999976544 4778888877665555544


Q ss_pred             C
Q 024866          245 E  245 (261)
Q Consensus       245 ~  245 (261)
                      .
T Consensus       319 ~  319 (328)
T 4fcg_A          319 H  319 (328)
T ss_dssp             -
T ss_pred             h
Confidence            4

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.35  E-value=4e-12  Score=111.79  Aligned_cols=190  Identities=18%  Similarity=0.168  Sum_probs=129.9

Q ss_pred             eeeEeeeccccccccCCCcchh-hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCccccc-----
Q 024866            5 GWFNFHEASEESVLFGGGEVLV-QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDA-----   78 (261)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l-~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~-----   78 (261)
                      ++++ ++..+..++++.....+ ..+..+++|+.|++......   .+......+.+|+.|++++|.....++..     
T Consensus        99 ~l~~-l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~  174 (328)
T 4fcg_A           99 QAFR-LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR---ALPASIASLNRLRELSIRACPELTELPEPLASTD  174 (328)
T ss_dssp             CGGG-GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC---CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred             hhhh-CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc---cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence            3443 66677777777654433 45778888999988854322   22223333457888999888766655420     


Q ss_pred             --ccccccCCCCeEEEeccC------------CcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC-ccccCCC
Q 024866           79 --TAFADLNHLNELYIFKGI------------ELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT-FLVFAPN  143 (261)
Q Consensus        79 --~~l~~l~~L~~L~i~~c~------------~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~-~l~~lp~  143 (261)
                        ..++.+++|+.|+++++.            +|+.+.+......+.++..+.+++|+.|++++|.....++ .++.+++
T Consensus       175 ~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~  254 (328)
T 4fcg_A          175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP  254 (328)
T ss_dssp             -CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCC
T ss_pred             chhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCC
Confidence              113347888888887653            3344433332222223335678999999999997776654 4578999


Q ss_pred             CcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeec
Q 024866          144 LKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVL  210 (261)
Q Consensus       144 L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~  210 (261)
                      |++|++++|..+..+..            .+..+++|+.|++.+|+.+..++.....+++|+.+.+.
T Consensus       255 L~~L~L~~n~~~~~~p~------------~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          255 LKRLILKDCSNLLTLPL------------DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             CCEEECTTCTTCCBCCT------------TGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             CCEEECCCCCchhhcch------------hhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            99999999987655432            45678999999999999999998877788888888664

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.19  E-value=9.8e-11  Score=106.98  Aligned_cols=202  Identities=18%  Similarity=0.156  Sum_probs=109.0

Q ss_pred             eccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCC
Q 024866           11 EASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLN   88 (261)
Q Consensus        11 ~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~   88 (261)
                      +..+..++++.....+  ..+..+++|+.|++.......+.  ......+.+|+.|+|+++ .+..++. ..++.+++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~  150 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE--VGAFNGLASLNTLELFDN-WLTVIPS-GAFEYLSKLR  150 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSS-CCSBCCT-TTSSSCTTCC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC--hhhccCcccCCEEECCCC-cCCccCh-hhhcccCCCC
Confidence            3455666666654433  55677777777777643221110  011122346777777765 3444433 3456666777


Q ss_pred             eEEEeccCCcceEe--------------cccccccccCC--CCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecc
Q 024866           89 ELYIFKGIELEELK--------------IDYTEIVRKRR--EPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDC  152 (261)
Q Consensus        89 ~L~i~~c~~Le~l~--------------~~~~~~~~~~p--~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C  152 (261)
                      +|+++++. +..+.              +........++  ....+++|+.|+++++ +++.++.+..+++|++|+++++
T Consensus       151 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          151 ELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGN  228 (452)
T ss_dssp             EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCCCTTCTTCCEEECTTS
T ss_pred             EEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cccccccccccccccEEECcCC
Confidence            77666543 22221              11000000001  1234555666666555 4555544455566666666654


Q ss_pred             cccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCccCCCCCCCCccccCCceE
Q 024866          153 GAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFV  231 (261)
Q Consensus       153 ~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~  231 (261)
                      . +..+.           +..+..+++|+.|++.+.. ++.+... ...+++|+.|+++++ +++.+|........+|+.
T Consensus       229 ~-l~~~~-----------~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~  294 (452)
T 3zyi_A          229 H-FPEIR-----------PGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVE  294 (452)
T ss_dssp             C-CSEEC-----------GGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCE
T ss_pred             c-CcccC-----------cccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCE
Confidence            2 22221           2245667889999988864 5555433 345789999999988 777888665544455555


Q ss_pred             E
Q 024866          232 I  232 (261)
Q Consensus       232 ~  232 (261)
                      +
T Consensus       295 L  295 (452)
T 3zyi_A          295 L  295 (452)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.18  E-value=1.4e-10  Score=105.68  Aligned_cols=204  Identities=17%  Similarity=0.160  Sum_probs=111.6

Q ss_pred             eccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCC
Q 024866           11 EASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLN   88 (261)
Q Consensus        11 ~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~   88 (261)
                      +..+..++++.....+  ..+..+++|+.|++.......+.  ......+.+|+.|+|+++ .+..++. ..+..+++|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~  139 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE--IGAFNGLANLNTLELFDN-RLTTIPN-GAFVYLSKLK  139 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC--GGGGTTCSSCCEEECCSS-CCSSCCT-TTSCSCSSCC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC--hhhccCCccCCEEECCCC-cCCeeCH-hHhhccccCc
Confidence            4455566666554333  45667777777777643221111  011112346777777765 4444433 3456666777


Q ss_pred             eEEEeccC-------------CcceEecccccccccCC--CCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccc
Q 024866           89 ELYIFKGI-------------ELEELKIDYTEIVRKRR--EPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCG  153 (261)
Q Consensus        89 ~L~i~~c~-------------~Le~l~~~~~~~~~~~p--~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~  153 (261)
                      .|+++++.             +|+.+.+........++  ....+++|+.|+++++ +++.++.+..+++|++|+++++ 
T Consensus       140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N-  217 (440)
T 3zyj_A          140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSGN-  217 (440)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCCCTTCSSCCEEECTTS-
T ss_pred             eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccccCCCcccCEEECCCC-
Confidence            77766543             12222111100000001  1234566666666666 4555555556666777766665 


Q ss_pred             ccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCccCCCCCCCCccccCCceEE
Q 024866          154 AMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVI  232 (261)
Q Consensus       154 ~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  232 (261)
                      .+..+.           +..+..+++|+.|++.+.. ++.+... ...+++|+.|+++++ +++.+|.........|+.+
T Consensus       218 ~l~~~~-----------~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  284 (440)
T 3zyj_A          218 HLSAIR-----------PGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERI  284 (440)
T ss_dssp             CCCEEC-----------TTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEE
T ss_pred             ccCccC-----------hhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEE
Confidence            333322           1245667888999888764 6666543 345789999999887 6777776655444555554


Q ss_pred             E
Q 024866          233 R  233 (261)
Q Consensus       233 ~  233 (261)
                      .
T Consensus       285 ~  285 (440)
T 3zyj_A          285 H  285 (440)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.17  E-value=3.1e-10  Score=94.70  Aligned_cols=112  Identities=15%  Similarity=0.053  Sum_probs=63.5

Q ss_pred             CCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCC
Q 024866           34 YLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRR  113 (261)
Q Consensus        34 ~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p  113 (261)
                      +|+.|++.......+..  ......++|+.|+++++..+..++. ..+..+++|++|++++|..+..+..+.        
T Consensus        32 ~l~~L~l~~n~l~~i~~--~~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~~--------  100 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPS--HAFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPDA--------  100 (239)
T ss_dssp             TCCEEEEESCCCSEECT--TTTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEECTTS--------
T ss_pred             cccEEEEeCCcceEECH--HHccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcCHHH--------
Confidence            66677776433221111  0112245677888887655666643 456777788888887766666552111        


Q ss_pred             CCcCCCCCcEEEEecCCCCCCCCccccCCCCc---EEEEecccccccc
Q 024866          114 EPFVFRSLHRVIIGECHKLKDVTFLVFAPNLK---SLRLFDCGAMEEI  158 (261)
Q Consensus       114 ~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~---~L~i~~C~~L~~i  158 (261)
                       ...+++|+.|++.++ +++.++.+..+++|+   +|+++++..++.+
T Consensus       101 -f~~l~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i  146 (239)
T 2xwt_C          101 -LKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDNPYMTSI  146 (239)
T ss_dssp             -EECCTTCCEEEEEEE-CCCSCCCCTTCCBCCSEEEEEEESCTTCCEE
T ss_pred             -hCCCCCCCEEeCCCC-CCccccccccccccccccEEECCCCcchhhc
Confidence             134667777777766 355554444555555   7777766444443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.13  E-value=2.5e-10  Score=100.23  Aligned_cols=81  Identities=17%  Similarity=0.131  Sum_probs=44.6

Q ss_pred             eEeeeccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCC
Q 024866            7 FNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNH   86 (261)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~   86 (261)
                      |+.++..+..++++.....+..+..+++|+.|++.......++.    ....++|++|+++++. +..+   +.+..+++
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~l~~n~-i~~~---~~~~~l~~  133 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA----LQNLTNLRELYLNEDN-ISDI---SPLANLTK  133 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG----GTTCTTCSEEECTTSC-CCCC---GGGTTCTT
T ss_pred             hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCchH----HcCCCcCCEEECcCCc-ccCc---hhhccCCc
Confidence            44566677777777666666667777777777776443322211    1223456666666543 2333   22455555


Q ss_pred             CCeEEEecc
Q 024866           87 LNELYIFKG   95 (261)
Q Consensus        87 L~~L~i~~c   95 (261)
                      |+.|++++|
T Consensus       134 L~~L~l~~n  142 (347)
T 4fmz_A          134 MYSLNLGAN  142 (347)
T ss_dssp             CCEEECTTC
T ss_pred             eeEEECCCC
Confidence            555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.13  E-value=2.3e-10  Score=99.49  Aligned_cols=183  Identities=15%  Similarity=0.179  Sum_probs=92.3

Q ss_pred             eccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeE
Q 024866           11 EASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNEL   90 (261)
Q Consensus        11 ~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L   90 (261)
                      +..+..++++.....+..++.+++|+.|++.......+..    ...+.+|+.|+++++. +..+   +.+..+++|+.|
T Consensus        41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~-l~~~---~~~~~l~~L~~L  112 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP-LKNV---SAIAGLQSIKTL  112 (308)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC-CSCC---GGGTTCTTCCEE
T ss_pred             CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCc-CCCc---hhhcCCCCCCEE
Confidence            4445555666555556666677777777776443222222    1223466777777653 3444   345666777777


Q ss_pred             EEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccc----
Q 024866           91 YIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAE----  166 (261)
Q Consensus        91 ~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~----  166 (261)
                      +++++. +..+           +....+++|+.|+++++ ++..+..+..+++|++|++++| .+..+........    
T Consensus       113 ~l~~n~-l~~~-----------~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L  178 (308)
T 1h6u_A          113 DLTSTQ-ITDV-----------TPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTL  178 (308)
T ss_dssp             ECTTSC-CCCC-----------GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEE
T ss_pred             ECCCCC-CCCc-----------hhhcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCC-cCCCChhhcCCCCCCEE
Confidence            766653 2111           11234455555555554 3444433444555555555544 2222111000000    


Q ss_pred             ------cCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866          167 ------TPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP  219 (261)
Q Consensus       167 ------~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp  219 (261)
                            .++++ .+..+++|+.|++.++. ++.+.. ...+++|+.|.+++++ +...|
T Consensus       179 ~l~~n~l~~~~-~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~l~~N~-i~~~~  233 (308)
T 1h6u_A          179 KADDNKISDIS-PLASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQT-ITNQP  233 (308)
T ss_dssp             ECCSSCCCCCG-GGGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEEEE-EECCC
T ss_pred             ECCCCccCcCh-hhcCCCCCCEEEccCCc-cCcccc-ccCCCCCCEEEccCCe-eecCC
Confidence                  00011 13456777777777763 555542 3457788888887775 34444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.09  E-value=1.4e-10  Score=101.91  Aligned_cols=176  Identities=16%  Similarity=0.114  Sum_probs=113.2

Q ss_pred             eEeeeccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCC
Q 024866            7 FNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNH   86 (261)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~   86 (261)
                      |..++..+..++++.....+..+..+++|+.|++.......+..    .....+|+.|.++++. +..+   ..+..+++
T Consensus       151 ~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~---~~~~~~~~  222 (347)
T 4fmz_A          151 LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP----LASLTSLHYFTAYVNQ-ITDI---TPVANMTR  222 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG----GGGCTTCCEEECCSSC-CCCC---GGGGGCTT
T ss_pred             hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc----ccCCCccceeecccCC-CCCC---chhhcCCc
Confidence            45566777788888777777778888999999887543322222    2234578888888863 3444   23678888


Q ss_pred             CCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccc
Q 024866           87 LNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAE  166 (261)
Q Consensus        87 L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~  166 (261)
                      |+.|++++|. +..+           +....+++|+.|++.+| .+.++..+..+++|++|++++| .+..+.       
T Consensus       223 L~~L~l~~n~-l~~~-----------~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n-~l~~~~-------  281 (347)
T 4fmz_A          223 LNSLKIGNNK-ITDL-----------SPLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSN-QISDIS-------  281 (347)
T ss_dssp             CCEEECCSSC-CCCC-----------GGGTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG-------
T ss_pred             CCEEEccCCc-cCCC-----------cchhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCC-ccCCCh-------
Confidence            9999988875 2211           11356778888888877 5666666667788888888876 333321       


Q ss_pred             cCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCccCCCCC
Q 024866          167 TPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRKPP  219 (261)
Q Consensus       167 ~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp  219 (261)
                            .+..+++|+.|++.+++ +..... ....+++|+.|.+++|+ ++.++
T Consensus       282 ------~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~  327 (347)
T 4fmz_A          282 ------VLNNLSQLNSLFLNNNQ-LGNEDMEVIGGLTNLTTLFLSQNH-ITDIR  327 (347)
T ss_dssp             ------GGGGCTTCSEEECCSSC-CCGGGHHHHHTCTTCSEEECCSSS-CCCCG
T ss_pred             ------hhcCCCCCCEEECcCCc-CCCcChhHhhccccCCEEEccCCc-ccccc
Confidence                  23456777777777764 443322 23346777777777776 44443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.05  E-value=1.2e-09  Score=100.04  Aligned_cols=133  Identities=20%  Similarity=0.171  Sum_probs=66.0

Q ss_pred             eeccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCe
Q 024866           10 HEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNE   89 (261)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~   89 (261)
                      ++..+..++++.....+..+..+++|+.|.+..........    .....+|+.|+++++. +..+   +.+..+++|+.
T Consensus       176 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~  247 (466)
T 1o6v_A          176 LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQ-LKDI---GTLASLTNLTD  247 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCC---GGGGGCTTCSE
T ss_pred             CCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc----ccccCCCCEEECCCCC-cccc---hhhhcCCCCCE
Confidence            34455555555555555555666666666655332211111    1123456666666653 3333   34556666777


Q ss_pred             EEEeccC-----------CcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecc
Q 024866           90 LYIFKGI-----------ELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDC  152 (261)
Q Consensus        90 L~i~~c~-----------~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C  152 (261)
                      |++++|.           .|+.+.+......+ .+....+++|+.|++.+| ++.++..+..+++|++|++++|
T Consensus       248 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n  319 (466)
T 1o6v_A          248 LDLANNQISNLAPLSGLTKLTELKLGANQISN-ISPLAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN  319 (466)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS
T ss_pred             EECCCCccccchhhhcCCCCCEEECCCCccCc-cccccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCC
Confidence            6666542           23333332221111 111345566666666665 4555544555666666666665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.05  E-value=1.1e-09  Score=93.45  Aligned_cols=84  Identities=18%  Similarity=0.097  Sum_probs=41.9

Q ss_pred             cCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866          116 FVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS  193 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  193 (261)
                      +.+++|+.|++.++ +++.+..  ++.+++|++|++++|. +..+..           ..+..+++|+.|++.++. ++.
T Consensus       130 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N~-l~~  195 (272)
T 3rfs_A          130 DKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPE-----------GVFDKLTQLKDLRLYQNQ-LKS  195 (272)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-----------TTTTTCTTCCEEECCSSC-CSC
T ss_pred             ccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccCH-----------HHhcCCccCCEEECCCCc-CCc
Confidence            34555566665555 3444432  3445556666655542 222211           123345666666666653 444


Q ss_pred             ccCC-CccCCccceeeeccCc
Q 024866          194 IFWK-PLPFTHLKKMAVLMCD  213 (261)
Q Consensus       194 i~~~-~~~~p~L~~L~i~~C~  213 (261)
                      +... ...+++|+.|.+.+++
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC
T ss_pred             cCHHHHhCCcCCCEEEccCCC
Confidence            4432 2345666666666654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.04  E-value=2.1e-09  Score=89.68  Aligned_cols=191  Identities=15%  Similarity=0.072  Sum_probs=130.9

Q ss_pred             eccccccccCCCcchhh--hhhcccCCceEEEEEcc-hHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCC
Q 024866           11 EASEESVLFGGGEVLVQ--ELLGLKYLEVLELTLGS-YQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHL   87 (261)
Q Consensus        11 ~~~~~~~~~~~~~~~l~--eL~~L~~L~~L~i~~~~-~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L   87 (261)
                      +..+..++++.....+.  .+..+++|+.|++.... ...+..  .......+|++|++++|..+..++. ..+..+++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~--~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES--HSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLL  107 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT--TTEESCTTCCEEEEEEETTCCEECT-TSEECCTTC
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH--hHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCC
Confidence            34566666666544443  47788999999998543 222111  1122345899999999888888864 567889999


Q ss_pred             CeEEEeccCCcceEecccccccccCCCCcCCCCCc---EEEEecCCCCCCCCc--cccCCCCc-EEEEeccccccccccc
Q 024866           88 NELYIFKGIELEELKIDYTEIVRKRREPFVFRSLH---RVIIGECHKLKDVTF--LVFAPNLK-SLRLFDCGAMEEIISV  161 (261)
Q Consensus        88 ~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~---~L~l~~C~~l~~l~~--l~~lp~L~-~L~i~~C~~L~~i~~~  161 (261)
                      +.|+++++. +..+           |....+++|+   .|+++++++++.++.  +..+++|+ +|+++++ .++.+.. 
T Consensus       108 ~~L~l~~n~-l~~l-----------p~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~-  173 (239)
T 2xwt_C          108 KFLGIFNTG-LKMF-----------PDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQG-  173 (239)
T ss_dssp             CEEEEEEEC-CCSC-----------CCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECT-
T ss_pred             CEEeCCCCC-Cccc-----------cccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCH-
Confidence            999999875 3322           3235566776   999999877877643  56789999 9999886 3444332 


Q ss_pred             ccccccCcccCCcccCCcccEEeccCCcccccccCCC-ccC-CccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          162 GKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKP-LPF-THLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       162 ~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~-p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                                 .....++|+.|++.+.+.++.+.... ..+ ++|+.|+++++ +++.+|...   ...++..+
T Consensus       174 -----------~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~---~~~L~~L~  232 (239)
T 2xwt_C          174 -----------YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKG---LEHLKELI  232 (239)
T ss_dssp             -----------TTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTT---CTTCSEEE
T ss_pred             -----------hhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhH---hccCceee
Confidence                       11223789999999988888886543 346 89999999984 577888763   34555443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.04  E-value=8.4e-10  Score=98.63  Aligned_cols=109  Identities=17%  Similarity=0.153  Sum_probs=64.7

Q ss_pred             CCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccccccc--cc----------ccCcccCCcccCCcccEEec
Q 024866          118 FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGK--IA----------ETPEMMGHISPFENLQSLDL  185 (261)
Q Consensus       118 ~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~--~~----------~~~~~~~~~~~~p~L~~L~L  185 (261)
                      +++|+.|++.++ ++++..++..+++|++|+++++. ++.+.....  ..          ..++++.....+++|+.|++
T Consensus       225 ~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L  302 (390)
T 3o6n_A          225 NVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL  302 (390)
T ss_dssp             CSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEEC
T ss_pred             cccccEEECCCC-CCcccHHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEEC
Confidence            456677777666 45555666778888888888763 333321100  00          01122333456778888888


Q ss_pred             cCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          186 DDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       186 ~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      .++ +++.++.....+++|+.|.+++++ ++.+|...   ...|+.+.
T Consensus       303 ~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~---~~~L~~L~  345 (390)
T 3o6n_A          303 SHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLKLST---HHTLKNLT  345 (390)
T ss_dssp             CSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCCCCT---TCCCSEEE
T ss_pred             CCC-cceecCccccccCcCCEEECCCCc-cceeCchh---hccCCEEE
Confidence            877 466665555567888888888875 56666433   34555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.03  E-value=1.3e-09  Score=88.51  Aligned_cols=130  Identities=14%  Similarity=0.176  Sum_probs=72.1

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCC--CC
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKD--VT  136 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~--l~  136 (261)
                      .+|+.|+++++ ++..+   +.+..+++|+.|++++| .+..+           +....+++|+.|++.++ ++.+  ..
T Consensus        44 ~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~l~~n-~~~~~-----------~~l~~l~~L~~L~l~~n-~l~~~~~~  106 (197)
T 4ezg_A           44 NSLTYITLANI-NVTDL---TGIEYAHNIKDLTINNI-HATNY-----------NPISGLSNLERLRIMGK-DVTSDKIP  106 (197)
T ss_dssp             HTCCEEEEESS-CCSCC---TTGGGCTTCSEEEEESC-CCSCC-----------GGGTTCTTCCEEEEECT-TCBGGGSC
T ss_pred             CCccEEeccCC-CccCh---HHHhcCCCCCEEEccCC-CCCcc-----------hhhhcCCCCCEEEeECC-ccCcccCh
Confidence            35667777664 33333   24566677777777766 23221           12245667777777765 4443  33


Q ss_pred             ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCC
Q 024866          137 FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLR  216 (261)
Q Consensus       137 ~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~  216 (261)
                      .+..+++|++|++++|. +....           +..+..+++|+.|++.++..+..++ ....+++|+.|.+++|. ++
T Consensus       107 ~l~~l~~L~~L~Ls~n~-i~~~~-----------~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~  172 (197)
T 4ezg_A          107 NLSGLTSLTLLDISHSA-HDDSI-----------LTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VH  172 (197)
T ss_dssp             CCTTCTTCCEEECCSSB-CBGGG-----------HHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CC
T ss_pred             hhcCCCCCCEEEecCCc-cCcHh-----------HHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-Cc
Confidence            44566777777777653 22111           0123446677777777766555554 24456677777776663 44


Q ss_pred             CCC
Q 024866          217 KPP  219 (261)
Q Consensus       217 ~lp  219 (261)
                      .++
T Consensus       173 ~~~  175 (197)
T 4ezg_A          173 DYR  175 (197)
T ss_dssp             CCT
T ss_pred             ChH
Confidence            444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.02  E-value=1.3e-09  Score=92.82  Aligned_cols=179  Identities=18%  Similarity=0.134  Sum_probs=119.5

Q ss_pred             CcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceE
Q 024866           22 GEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEEL  101 (261)
Q Consensus        22 ~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l  101 (261)
                      .......+..+++|+.|.+.......+..    ...+++|+.|+++++. +..+   +.++.+++|++|+++++. +..+
T Consensus        30 ~~~~~~~~~~l~~L~~L~l~~~~i~~~~~----l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~n~-l~~~  100 (272)
T 3rfs_A           30 SVTDAVTQNELNSIDQIIANNSDIKSVQG----IQYLPNVRYLALGGNK-LHDI---SALKELTNLTYLILTGNQ-LQSL  100 (272)
T ss_dssp             CTTSEECHHHHTTCCEEECTTSCCCCCTT----GGGCTTCCEEECTTSC-CCCC---GGGTTCTTCCEEECTTSC-CCCC
T ss_pred             ccccccccccccceeeeeeCCCCcccccc----cccCCCCcEEECCCCC-CCCc---hhhcCCCCCCEEECCCCc-cCcc
Confidence            33444555666777777776444332222    2234689999999874 4444   467889999999999874 3322


Q ss_pred             ecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecccccccccccccccccCcccCCcccCCc
Q 024866          102 KIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFEN  179 (261)
Q Consensus       102 ~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~  179 (261)
                      ..         ...+.+++|+.|++.++ ++..+..  +..+++|++|++++| .+..+..           ..+..+++
T Consensus       101 ~~---------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~-----------~~~~~l~~  158 (272)
T 3rfs_A          101 PN---------GVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPK-----------GVFDKLTN  158 (272)
T ss_dssp             CT---------TTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-----------TTTTTCTT
T ss_pred             Ch---------hHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCC-ccCccCH-----------HHhccCcc
Confidence            10         11356889999999988 5766643  567899999999987 4443332           13456889


Q ss_pred             ccEEeccCCcccccccCCC-ccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          180 LQSLDLDDLPHLKSIFWKP-LPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       180 L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      |+.|++.++. ++.+.... ..+++|+.|.+++|. ++.+|........+|+.+.
T Consensus       159 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~  211 (272)
T 3rfs_A          159 LTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIW  211 (272)
T ss_dssp             CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEE
T ss_pred             CCEEECCCCC-cCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCEEE
Confidence            9999999874 77776543 468999999999884 6666654444445666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.01  E-value=9.9e-10  Score=93.97  Aligned_cols=180  Identities=16%  Similarity=0.114  Sum_probs=95.7

Q ss_pred             ccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCe
Q 024866           12 ASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNE   89 (261)
Q Consensus        12 ~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~   89 (261)
                      ..+..++++.....+  ..+..+++|+.|++.......+.  ......+++|+.|+++++..+..++. ..+..+++|+.
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~L~~  109 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID--AAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHT  109 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSCTTCCCCCT-TTTTTCTTCCE
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC--HhhcCCccCCCEEeCCCCCCccccCH-HHhcCCcCCCE
Confidence            344444444433222  23555566666665532211100  11111234566666666544444433 44556666666


Q ss_pred             EEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEeccccccccccccccccc
Q 024866           90 LYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAET  167 (261)
Q Consensus        90 L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~  167 (261)
                      |+++++.- ..+.         ......+++|+.|++.++ ++..+..  ++.+++|++|+++++ .++.+..       
T Consensus       110 L~l~~n~l-~~~~---------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-------  170 (285)
T 1ozn_A          110 LHLDRCGL-QELG---------PGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPE-------  170 (285)
T ss_dssp             EECTTSCC-CCCC---------TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECT-------
T ss_pred             EECCCCcC-CEEC---------HhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECCCC-cccccCH-------
Confidence            66665541 1110         011245677777877776 4555432  456777888877775 3333321       


Q ss_pred             CcccCCcccCCcccEEeccCCccccccc-CCCccCCccceeeeccCccCCCCC
Q 024866          168 PEMMGHISPFENLQSLDLDDLPHLKSIF-WKPLPFTHLKKMAVLMCDQLRKPP  219 (261)
Q Consensus       168 ~~~~~~~~~~p~L~~L~L~~~~~L~~i~-~~~~~~p~L~~L~i~~C~~L~~lp  219 (261)
                          ..+..+++|+.|++.+.. +..+. .....+++|+.|+++++ +++.+|
T Consensus       171 ----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~  217 (285)
T 1ozn_A          171 ----RAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALP  217 (285)
T ss_dssp             ----TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred             ----HHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCC
Confidence                134557888888888765 55553 23445788888888887 455555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.01  E-value=3.7e-09  Score=96.80  Aligned_cols=35  Identities=23%  Similarity=0.158  Sum_probs=19.3

Q ss_pred             eeeccccccccCCCcchhhhhhcccCCceEEEEEc
Q 024866            9 FHEASEESVLFGGGEVLVQELLGLKYLEVLELTLG   43 (261)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~   43 (261)
                      .++..+..++++.....+..+..+++|+.|++...
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n  144 (466)
T 1o6v_A          110 NLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN  144 (466)
T ss_dssp             TCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEE
T ss_pred             CCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCC
Confidence            34455555555555444445566666666666543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.01  E-value=7.1e-10  Score=95.70  Aligned_cols=164  Identities=17%  Similarity=0.201  Sum_probs=91.3

Q ss_pred             cccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEE
Q 024866           13 SEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYI   92 (261)
Q Consensus        13 ~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i   92 (261)
                      .+..++++.....+..++.+++|+.|++.......+..    ...+.+|+.|+++++. +..+   +.+..+++|+.|++
T Consensus        48 L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L  119 (291)
T 1h6t_A           48 IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENK-VKDL---SSLKDLKKLKSLSL  119 (291)
T ss_dssp             CCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSC-CCCG---GGGTTCTTCCEEEC
T ss_pred             ccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCc-CCCC---hhhccCCCCCEEEC
Confidence            34444444444444455555555555555332221111    1112345555555542 2333   23555556666665


Q ss_pred             eccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccC
Q 024866           93 FKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMG  172 (261)
Q Consensus        93 ~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~  172 (261)
                      +++. +..+           +....+++|+.|+++++ +++++..+..+++|++|++++| .+..+.             
T Consensus       120 ~~n~-i~~~-----------~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N-~l~~~~-------------  172 (291)
T 1h6t_A          120 EHNG-ISDI-----------NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDN-QISDIV-------------  172 (291)
T ss_dssp             TTSC-CCCC-----------GGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS-CCCCCG-------------
T ss_pred             CCCc-CCCC-----------hhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCC-ccccch-------------
Confidence            5543 2211           22245677777777776 5666655666777777777776 233322             


Q ss_pred             CcccCCcccEEeccCCcccccccCCCccCCccceeeeccCc
Q 024866          173 HISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD  213 (261)
Q Consensus       173 ~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~  213 (261)
                      .+..+++|+.|++.++ +++.+.. ...+++|+.|++++++
T Consensus       173 ~l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          173 PLAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             GGTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEE
T ss_pred             hhcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCc
Confidence            1456788999999886 4666543 4567899999998874

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.00  E-value=3e-09  Score=96.60  Aligned_cols=59  Identities=20%  Similarity=0.146  Sum_probs=42.8

Q ss_pred             CcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          173 HISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       173 ~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      .+..+++|+.|++.++. ++.+.. ....+++|+.|+++++ +++.+|........+|+.+.
T Consensus       342 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~  401 (455)
T 3v47_A          342 MFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIW  401 (455)
T ss_dssp             GGTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred             HhcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC-ccccCCHhHhccCCcccEEE
Confidence            45668899999998874 666633 3456899999999996 57788876555556677654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.00  E-value=1.5e-09  Score=99.39  Aligned_cols=184  Identities=20%  Similarity=0.188  Sum_probs=89.0

Q ss_pred             eccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCC
Q 024866           11 EASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLN   88 (261)
Q Consensus        11 ~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~   88 (261)
                      +..+..++++.....+  ..+..+++|+.|++.......+.  ......+.+|+.|+|+++ .+..++. ..+..+++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~  107 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE--PGAFNNLFNLRTLGLRSN-RLKLIPL-GVFTGLSNLT  107 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSS-CCCSCCT-TSSTTCTTCC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC--hhhhhCCccCCEEECCCC-cCCccCc-ccccCCCCCC
Confidence            3455666666654443  45677777777777632211110  111222346777777764 3444433 3456667777


Q ss_pred             eEEEeccC-------------CcceEecccccccccCC-CCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecc
Q 024866           89 ELYIFKGI-------------ELEELKIDYTEIVRKRR-EPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDC  152 (261)
Q Consensus        89 ~L~i~~c~-------------~Le~l~~~~~~~~~~~p-~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C  152 (261)
                      .|+++++.             +|+.+.+.........+ ....+++|+.|++.++ +++.+..  +..+++|++|+++++
T Consensus       108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESC
T ss_pred             EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCC
Confidence            77766542             23333222211101111 2345667777777766 4555432  345666777766665


Q ss_pred             cccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeecc
Q 024866          153 GAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLM  211 (261)
Q Consensus       153 ~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~  211 (261)
                      . +..+..           ..+..+++|+.|++.+++.+..++.......+|+.|.+++
T Consensus       187 ~-i~~~~~-----------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  233 (477)
T 2id5_A          187 N-INAIRD-----------YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH  233 (477)
T ss_dssp             C-CCEECT-----------TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEES
T ss_pred             c-CcEeCh-----------hhcccCcccceeeCCCCccccccCcccccCccccEEECcC
Confidence            3 222211           1233455566666655554444433322233344444333

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.00  E-value=5.2e-09  Score=84.84  Aligned_cols=150  Identities=17%  Similarity=0.176  Sum_probs=106.5

Q ss_pred             hcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEeccccccc
Q 024866           30 LGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIV  109 (261)
Q Consensus        30 ~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~  109 (261)
                      ..+++|+.|++.......+..    ...+++|+.|+++++ .+..+   +.+..+++|+.|+++++. +...        
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~----l~~l~~L~~L~l~~n-~~~~~---~~l~~l~~L~~L~l~~n~-l~~~--------  103 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTG----IEYAHNIKDLTINNI-HATNY---NPISGLSNLERLRIMGKD-VTSD--------  103 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTT----GGGCTTCSEEEEESC-CCSCC---GGGTTCTTCCEEEEECTT-CBGG--------
T ss_pred             hhcCCccEEeccCCCccChHH----HhcCCCCCEEEccCC-CCCcc---hhhhcCCCCCEEEeECCc-cCcc--------
Confidence            446778888888554333332    233468999999998 54555   567889999999999875 2210        


Q ss_pred             ccCCCCcCCCCCcEEEEecCCCCCC--CCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccC
Q 024866          110 RKRREPFVFRSLHRVIIGECHKLKD--VTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDD  187 (261)
Q Consensus       110 ~~~p~~~~~~~L~~L~l~~C~~l~~--l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~  187 (261)
                       .+.....+++|+.|++++| ++.+  +..+..+++|++|++++|..+..+.             .+..+++|+.|++.+
T Consensus       104 -~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-------------~l~~l~~L~~L~l~~  168 (197)
T 4ezg_A          104 -KIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM-------------PLKTLPELKSLNIQF  168 (197)
T ss_dssp             -GSCCCTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-------------GGGGCSSCCEEECTT
T ss_pred             -cChhhcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH-------------hhcCCCCCCEEECCC
Confidence             1233467899999999998 5665  3345789999999999987555442             345689999999998


Q ss_pred             CcccccccCCCccCCccceeeeccCc
Q 024866          188 LPHLKSIFWKPLPFTHLKKMAVLMCD  213 (261)
Q Consensus       188 ~~~L~~i~~~~~~~p~L~~L~i~~C~  213 (261)
                      +. ++.+. ....+++|+.|.+++.+
T Consensus       169 n~-i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          169 DG-VHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             BC-CCCCT-TGGGCSSCCEEEECBC-
T ss_pred             CC-CcChH-HhccCCCCCEEEeeCcc
Confidence            75 66654 45568999999887754

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.00  E-value=7.9e-10  Score=96.13  Aligned_cols=162  Identities=18%  Similarity=0.211  Sum_probs=92.8

Q ss_pred             eEeeeccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCC
Q 024866            7 FNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNH   86 (261)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~   86 (261)
                      |+.++..+..++++.....+..+..+++|+.|++.......+.    ....+.+|+.|+++++. +..+   +.+..+++
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~l~~n~-l~~~---~~l~~l~~  130 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS----AIAGLQSIKTLDLTSTQ-ITDV---TPLAGLSN  130 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG----GGTTCTTCCEEECTTSC-CCCC---GGGTTCTT
T ss_pred             hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch----hhcCCCCCCEEECCCCC-CCCc---hhhcCCCC
Confidence            4456778888888887777777888999999998854433322    12234578999998874 4554   34788888


Q ss_pred             CCeEEEeccC-----------CcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccc
Q 024866           87 LNELYIFKGI-----------ELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAM  155 (261)
Q Consensus        87 L~~L~i~~c~-----------~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L  155 (261)
                      |+.|+++++.           +|+.+.+..... ..++....+++|+.|+++++ +++++..+..+++|++|++++|. +
T Consensus       131 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~-l  207 (308)
T 1h6u_A          131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQV-SDLTPLANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-I  207 (308)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCC-CCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-C
T ss_pred             CCEEECCCCccCcCccccCCCCccEEEccCCcC-CCChhhcCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCc-c
Confidence            9999888763           122222211111 00111233444444444444 33433333444444444444431 2


Q ss_pred             ccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866          156 EEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS  193 (261)
Q Consensus       156 ~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  193 (261)
                      ..+            + .+..+++|+.|++.+.+ ++.
T Consensus       208 ~~~------------~-~l~~l~~L~~L~l~~N~-i~~  231 (308)
T 1h6u_A          208 SDV------------S-PLANTSNLFIVTLTNQT-ITN  231 (308)
T ss_dssp             CBC------------G-GGTTCTTCCEEEEEEEE-EEC
T ss_pred             Ccc------------c-cccCCCCCCEEEccCCe-eec
Confidence            111            1 24568899999998865 443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.00  E-value=9.5e-11  Score=102.38  Aligned_cols=179  Identities=17%  Similarity=0.093  Sum_probs=93.8

Q ss_pred             eccccccccCCCcc---hhhhhhcccCCceEEEEEcchH--HHHHHhhCcccccceeEEEEcCCCCCCcccccccccccC
Q 024866           11 EASEESVLFGGGEV---LVQELLGLKYLEVLELTLGSYQ--ALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLN   85 (261)
Q Consensus        11 ~~~~~~~~~~~~~~---~l~eL~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~   85 (261)
                      +..+..++++....   ....+..+++|+.|++......  ....+..    .++|++|++++|..+....+...+..++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~----~~~L~~L~L~~~~~l~~~~l~~~~~~~~  168 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNLVRLNLSGCSGFSEFALQTLLSSCS  168 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT----CTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc----CCCCCEEECCCCCCCCHHHHHHHHhcCC
Confidence            44555555554321   3344556666666666543221  1111111    3466777777765544322223355666


Q ss_pred             CCCeEEEeccCCcceEecccccccccCCCCcCCC-CCcEEEEecCC-CCCC--C-CccccCCCCcEEEEecccccccccc
Q 024866           86 HLNELYIFKGIELEELKIDYTEIVRKRREPFVFR-SLHRVIIGECH-KLKD--V-TFLVFAPNLKSLRLFDCGAMEEIIS  160 (261)
Q Consensus        86 ~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~-~L~~L~l~~C~-~l~~--l-~~l~~lp~L~~L~i~~C~~L~~i~~  160 (261)
                      +|++|++++|..+....+.        .....++ +|+.|++.+|. .+.+  + .....+++|++|++++|..+.....
T Consensus       169 ~L~~L~l~~~~~l~~~~~~--------~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~  240 (336)
T 2ast_B          169 RLDELNLSWCFDFTEKHVQ--------VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF  240 (336)
T ss_dssp             TCCEEECCCCTTCCHHHHH--------HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred             CCCEEcCCCCCCcChHHHH--------HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHH
Confidence            7777777766444321000        0013456 77777777664 3332  1 1224567777777777654432111


Q ss_pred             cccccccCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccC
Q 024866          161 VGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMC  212 (261)
Q Consensus       161 ~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C  212 (261)
                                 ..+..+++|++|++.+|..+..... ....+++|+.|.+++|
T Consensus       241 -----------~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          241 -----------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             -----------GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             -----------HHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence                       1334568888888888874432211 1235788888888888

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.99  E-value=6.6e-10  Score=105.52  Aligned_cols=166  Identities=17%  Similarity=0.185  Sum_probs=98.4

Q ss_pred             ccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEE
Q 024866           12 ASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELY   91 (261)
Q Consensus        12 ~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~   91 (261)
                      ..+..++.+.....+..++.+++|+.|++.......+..    ...+.+|+.|.|+++ .+..+   +.+..+++|+.|+
T Consensus        44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~  115 (605)
T 1m9s_A           44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDEN-KIKDL---SSLKDLKKLKSLS  115 (605)
T ss_dssp             TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSS-CCCCC---TTSTTCTTCCEEE
T ss_pred             CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCC-CCCCC---hhhccCCCCCEEE
Confidence            344455555555555556666666666665332221111    112345666666665 23333   3455666666666


Q ss_pred             EeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCccc
Q 024866           92 IFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMM  171 (261)
Q Consensus        92 i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~  171 (261)
                      ++++. +..           ++....+++|+.|+|++| ++..+..+..+++|+.|++++|. +..+.            
T Consensus       116 Ls~N~-l~~-----------l~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~~~------------  169 (605)
T 1m9s_A          116 LEHNG-ISD-----------INGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQ-ISDIV------------  169 (605)
T ss_dssp             CTTSC-CCC-----------CGGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSC-CCCCG------------
T ss_pred             ecCCC-CCC-----------CccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCc-CCCch------------
Confidence            66554 221           122356778888888777 56666666777888888887763 33222            


Q ss_pred             CCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCcc
Q 024866          172 GHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQ  214 (261)
Q Consensus       172 ~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~  214 (261)
                       .+..+++|+.|+|.++ ++..+. ....+++|+.|.+++|+-
T Consensus       170 -~l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          170 -PLAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             -GGTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred             -hhccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCcC
Confidence             1456889999999887 366653 345688999999988753

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.99  E-value=2.2e-09  Score=97.61  Aligned_cols=183  Identities=20%  Similarity=0.213  Sum_probs=98.8

Q ss_pred             cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccC
Q 024866           33 KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKR  112 (261)
Q Consensus        33 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~  112 (261)
                      ++++.|++.......+.  ......+.+|+.|+|+++ .+..+.. ..+..+++|+.|+++++. +..+..+        
T Consensus        64 ~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n-~i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~--------  130 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIK--VNSFKHLRHLEILQLSRN-HIRTIEI-GAFNGLANLNTLELFDNR-LTTIPNG--------  130 (440)
T ss_dssp             TTCSEEECCSCCCCEEC--TTTTSSCSSCCEEECCSS-CCCEECG-GGGTTCSSCCEEECCSSC-CSSCCTT--------
T ss_pred             CCCcEEEccCCcCCeeC--HHHhhCCCCCCEEECCCC-cCCccCh-hhccCCccCCEEECCCCc-CCeeCHh--------
Confidence            56777877743322111  112233468999999986 4566654 578899999999999863 3322110        


Q ss_pred             CCCcCCCCCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccc--c----------ccCcccCCcccCC
Q 024866          113 REPFVFRSLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKI--A----------ETPEMMGHISPFE  178 (261)
Q Consensus       113 p~~~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~--~----------~~~~~~~~~~~~p  178 (261)
                       ....+++|+.|+++++ ++..+.  .+..+++|++|++++|+.+..+......  .          ..+.++ .+..++
T Consensus       131 -~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~  207 (440)
T 3zyj_A          131 -AFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLI  207 (440)
T ss_dssp             -TSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCS
T ss_pred             -HhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCc
Confidence             1234556666666554 344332  1334566666666655544443221000  0          000111 234567


Q ss_pred             cccEEeccCCcccccccC-CCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          179 NLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       179 ~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      +|+.|++.+. +++.+.. ....+++|+.|.+.++ +++.++........+|+.+.
T Consensus       208 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  261 (440)
T 3zyj_A          208 KLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEIN  261 (440)
T ss_dssp             SCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEE
T ss_pred             ccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEE
Confidence            7777777776 4665543 2345778888887776 34444444333345555544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.98  E-value=3.1e-09  Score=97.31  Aligned_cols=56  Identities=14%  Similarity=-0.048  Sum_probs=31.9

Q ss_pred             cccCCcccEEeccCCcccccccC-CCccCCccceeeeccCccCCCCCCCCccccCCceE
Q 024866          174 ISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFV  231 (261)
Q Consensus       174 ~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~  231 (261)
                      +..+++|+.|++.+.. ++.+.. ....+++|+.|+++++ +++.+|........+|+.
T Consensus       268 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~  324 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLET  324 (477)
T ss_dssp             CTTCTTCCEEECCSSC-CSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCE
T ss_pred             ccccccCCEEECCCCc-cceECHHHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCE
Confidence            4456777777777653 555433 2335677777777776 556665443333334444

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.97  E-value=2.3e-09  Score=93.59  Aligned_cols=49  Identities=8%  Similarity=0.024  Sum_probs=37.2

Q ss_pred             CcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCc
Q 024866          173 HISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSN  223 (261)
Q Consensus       173 ~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~  223 (261)
                      .+..+++|+.|++.++ +++.++.....+++|+.|.++++. ++.+|....
T Consensus       235 ~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f  283 (330)
T 1xku_A          235 SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDF  283 (330)
T ss_dssp             TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSS
T ss_pred             hccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc-CCccChhhc
Confidence            4556788999999887 477777666678999999999874 677765444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.93  E-value=2.4e-09  Score=100.80  Aligned_cols=60  Identities=17%  Similarity=0.094  Sum_probs=35.0

Q ss_pred             CCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          172 GHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       172 ~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      ..+..+++|+.|++.++. ++.+.. ....+++|+.|.+++| ++..++........+|+.+.
T Consensus       467 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~  527 (606)
T 3vq2_A          467 NVFANTTNLTFLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLD  527 (606)
T ss_dssp             SCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEE
T ss_pred             HhhccCCCCCEEECCCCc-CCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcCCEEE
Confidence            345667788888888773 555543 3446788888888888 34444222222234455543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.92  E-value=3.2e-09  Score=100.36  Aligned_cols=108  Identities=17%  Similarity=0.135  Sum_probs=62.9

Q ss_pred             CCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccc--c----------ccCcccCCcccCCcccEEec
Q 024866          118 FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKI--A----------ETPEMMGHISPFENLQSLDL  185 (261)
Q Consensus       118 ~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~--~----------~~~~~~~~~~~~p~L~~L~L  185 (261)
                      +++|+.|++.++ .+.+..++..+++|++|+++++. +..++.....  .          ..++++.....+|+|+.|++
T Consensus       231 ~~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L  308 (597)
T 3oja_B          231 NVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL  308 (597)
T ss_dssp             CSCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEEC
T ss_pred             CCCCCEEECCCC-CCCCChhhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEEC
Confidence            345666666666 45555566778888888888763 3333211100  0          01123334455778888888


Q ss_pred             cCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEE
Q 024866          186 DDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVI  232 (261)
Q Consensus       186 ~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  232 (261)
                      +++. +..++.....+++|+.|++++|. +..+|...   ...|+.+
T Consensus       309 s~N~-l~~i~~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~L~~L  350 (597)
T 3oja_B          309 SHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLKLST---HHTLKNL  350 (597)
T ss_dssp             CSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCCCCT---TCCCSEE
T ss_pred             CCCC-CCccCcccccCCCCCEEECCCCC-CCCcChhh---cCCCCEE
Confidence            7764 55665555567888888888875 55555433   2445443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.91  E-value=2.5e-09  Score=92.26  Aligned_cols=202  Identities=14%  Similarity=0.094  Sum_probs=114.5

Q ss_pred             eccccccccCCCcchhhh--hhcccCCceEEEEEcchHHH----HHHhhCcccccceeEEEEcCCCCCCccccccccccc
Q 024866           11 EASEESVLFGGGEVLVQE--LLGLKYLEVLELTLGSYQAL----QILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADL   84 (261)
Q Consensus        11 ~~~~~~~~~~~~~~~l~e--L~~L~~L~~L~i~~~~~~~l----~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l   84 (261)
                      +..+..++++.....+..  +..+++|+.|++........    ....    ...+|+.|+++++. +..++  ..+..+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~----~~~~L~~L~Ls~n~-i~~l~--~~~~~l  100 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF----GTTSLKYLDLSFNG-VITMS--SNFLGL  100 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH----SCSCCCEEECCSCS-EEEEE--EEEETC
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc----cccccCEEECCCCc-cccCh--hhcCCC
Confidence            455666666665444433  56778888887763321110    1111    12467777777653 23332  345666


Q ss_pred             CCCCeEEEecc--------------CCcceEecccccccccCC-CCcCCCCCcEEEEecCCCCCC--C-CccccCCCCcE
Q 024866           85 NHLNELYIFKG--------------IELEELKIDYTEIVRKRR-EPFVFRSLHRVIIGECHKLKD--V-TFLVFAPNLKS  146 (261)
Q Consensus        85 ~~L~~L~i~~c--------------~~Le~l~~~~~~~~~~~p-~~~~~~~L~~L~l~~C~~l~~--l-~~l~~lp~L~~  146 (261)
                      ++|+.|+++++              .+|+.+.+.........+ ....+++|+.|++.++ ++..  + ..+..+++|++
T Consensus       101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~  179 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTF  179 (306)
T ss_dssp             TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCE
T ss_pred             CCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCE
Confidence            67777766543              223333332221111122 1356789999999887 3443  1 34567899999


Q ss_pred             EEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCccCCCCCCCCccc
Q 024866          147 LRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCDQLRKPPLDSNSA  225 (261)
Q Consensus       147 L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~  225 (261)
                      |+++++. ++.+..           ..+..+++|+.|++.+.. ++.+... ...+++|+.|+++++.--...|......
T Consensus       180 L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          180 LDLSQCQ-LEQLSP-----------TAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             EECTTSC-CCEECT-----------TTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred             EECCCCC-cCCcCH-----------HHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence            9999873 443321           244568899999998865 6665442 3457899999999985433333222222


Q ss_pred             cCCceEEE
Q 024866          226 KERKFVIR  233 (261)
Q Consensus       226 ~~~l~~~~  233 (261)
                      +.+|+.+.
T Consensus       247 ~~~L~~L~  254 (306)
T 2z66_A          247 PSSLAFLN  254 (306)
T ss_dssp             CTTCCEEE
T ss_pred             hccCCEEE
Confidence            23555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.91  E-value=2.1e-09  Score=94.07  Aligned_cols=90  Identities=18%  Similarity=0.179  Sum_probs=57.4

Q ss_pred             CCCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC
Q 024866          119 RSLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW  196 (261)
Q Consensus       119 ~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~  196 (261)
                      ++|+.|+++++ +++.+.  .+..+++|++|+++++ .+..+..           ..+..+++|+.|++.++ +++.++.
T Consensus       193 ~~L~~L~l~~n-~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~lp~  258 (332)
T 2ft3_A          193 ETLNELHLDHN-KIQAIELEDLLRYSKLYRLGLGHN-QIRMIEN-----------GSLSFLPTLRELHLDNN-KLSRVPA  258 (332)
T ss_dssp             SSCSCCBCCSS-CCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCT-----------TGGGGCTTCCEEECCSS-CCCBCCT
T ss_pred             CCCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCcCCh-----------hHhhCCCCCCEEECCCC-cCeecCh
Confidence            56666666555 344432  2345666677666665 2222211           23456889999999887 4777776


Q ss_pred             CCccCCccceeeeccCccCCCCCCCCc
Q 024866          197 KPLPFTHLKKMAVLMCDQLRKPPLDSN  223 (261)
Q Consensus       197 ~~~~~p~L~~L~i~~C~~L~~lp~~~~  223 (261)
                      ....+++|+.|.++++ +++.+|....
T Consensus       259 ~l~~l~~L~~L~l~~N-~l~~~~~~~~  284 (332)
T 2ft3_A          259 GLPDLKLLQVVYLHTN-NITKVGVNDF  284 (332)
T ss_dssp             TGGGCTTCCEEECCSS-CCCBCCTTSS
T ss_pred             hhhcCccCCEEECCCC-CCCccChhHc
Confidence            6667889999999887 4777765443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.90  E-value=4.1e-09  Score=94.10  Aligned_cols=196  Identities=15%  Similarity=0.123  Sum_probs=98.3

Q ss_pred             eeeEeeeccccccccCCCcchhhh--hhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCccccccccc
Q 024866            5 GWFNFHEASEESVLFGGGEVLVQE--LLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFA   82 (261)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~e--L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~   82 (261)
                      +.|+-++..+..++++.....+..  +..+++|+.|++.......+.  .......++|+.|+++++. +..++    ++
T Consensus       111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~----~~  183 (390)
T 3o6n_A          111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNR-LTHVD----LS  183 (390)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTSSCTTCCEEECCSSC-CSBCC----GG
T ss_pred             HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC--hhhccCCCCCCEEECCCCc-CCccc----cc
Confidence            345556667777777765444433  466778888877643221110  1112223467777777653 23322    23


Q ss_pred             ccCCCCeEE-------------------EeccC----------CcceEecccccccccCCCCcCCCCCcEEEEecCCCCC
Q 024866           83 DLNHLNELY-------------------IFKGI----------ELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLK  133 (261)
Q Consensus        83 ~l~~L~~L~-------------------i~~c~----------~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~  133 (261)
                      .+++|+.|+                   ++++.          +|+.+.+..... ...+....+++|+.|+++++ ++.
T Consensus       184 ~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l-~~~~~l~~l~~L~~L~Ls~n-~l~  261 (390)
T 3o6n_A          184 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYN-ELE  261 (390)
T ss_dssp             GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCC-CCCGGGGGCTTCSEEECCSS-CCC
T ss_pred             cccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCC-cccHHHcCCCCccEEECCCC-cCC
Confidence            333333333                   33221          122222221111 11122345566666666665 343


Q ss_pred             CC--CccccCCCCcEEEEecccccccccccccc-c----------ccCcccCCcccCCcccEEeccCCcccccccCCCcc
Q 024866          134 DV--TFLVFAPNLKSLRLFDCGAMEEIISVGKI-A----------ETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLP  200 (261)
Q Consensus       134 ~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~-~----------~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~  200 (261)
                      .+  ..+..+++|++|+++++. ++.+...... .          ....++..+..+++|+.|++.+++ ++.+.  ...
T Consensus       262 ~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~  337 (390)
T 3o6n_A          262 KIMYHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK--LST  337 (390)
T ss_dssp             EEESGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCT
T ss_pred             CcChhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCc-cceeC--chh
Confidence            33  123445666666665542 2222111000 0          001233345678999999999976 66664  556


Q ss_pred             CCccceeeeccCc
Q 024866          201 FTHLKKMAVLMCD  213 (261)
Q Consensus       201 ~p~L~~L~i~~C~  213 (261)
                      +++|+.|.+++++
T Consensus       338 ~~~L~~L~l~~N~  350 (390)
T 3o6n_A          338 HHTLKNLTLSHND  350 (390)
T ss_dssp             TCCCSEEECCSSC
T ss_pred             hccCCEEEcCCCC
Confidence            8899999998764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.89  E-value=2.5e-10  Score=99.70  Aligned_cols=182  Identities=16%  Similarity=0.177  Sum_probs=112.0

Q ss_pred             hhcccCCceEEEEEcchH--HHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccc
Q 024866           29 LLGLKYLEVLELTLGSYQ--ALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYT  106 (261)
Q Consensus        29 L~~L~~L~~L~i~~~~~~--~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~  106 (261)
                      +..+++|+.|++......  .+.....   ..++|++|++++|. +..... ..+..+++|++|++++|..+....+.  
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~---~~~~L~~L~L~~~~-l~~~~~-~~l~~~~~L~~L~L~~~~~l~~~~l~--  161 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGILS---QCSKLQNLSLEGLR-LSDPIV-NTLAKNSNLVRLNLSGCSGFSEFALQ--  161 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHT---TBCCCSEEECTTCB-CCHHHH-HHHTTCTTCSEEECTTCBSCCHHHHH--
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHHHh---hCCCCCEEeCcCcc-cCHHHH-HHHhcCCCCCEEECCCCCCCCHHHHH--
Confidence            445677777777644321  1333332   23578888888874 332222 45677888888888888655321110  


Q ss_pred             cccccCCCCcCCCCCcEEEEecCCCCCCC---CccccCC-CCcEEEEeccc-ccccccccccccccCcccCCcccCCccc
Q 024866          107 EIVRKRREPFVFRSLHRVIIGECHKLKDV---TFLVFAP-NLKSLRLFDCG-AMEEIISVGKIAETPEMMGHISPFENLQ  181 (261)
Q Consensus       107 ~~~~~~p~~~~~~~L~~L~l~~C~~l~~l---~~l~~lp-~L~~L~i~~C~-~L~~i~~~~~~~~~~~~~~~~~~~p~L~  181 (261)
                            .....+++|+.|++.+|.++.+.   ..+..+| +|++|++++|. .+.+.          .++.....+++|+
T Consensus       162 ------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~----------~l~~~~~~~~~L~  225 (336)
T 2ast_B          162 ------TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS----------DLSTLVRRCPNLV  225 (336)
T ss_dssp             ------HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH----------HHHHHHHHCTTCS
T ss_pred             ------HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH----------HHHHHHhhCCCCC
Confidence                  00245789999999998777652   2245688 99999999986 34321          0111334689999


Q ss_pred             EEeccCCcccccc-cCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          182 SLDLDDLPHLKSI-FWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       182 ~L~L~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      +|++.++..++.. ......+++|++|.+++|..+..-.........+|+.+.
T Consensus       226 ~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  278 (336)
T 2ast_B          226 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ  278 (336)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             EEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEe
Confidence            9999999866542 223456799999999999744322111122245566654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.88  E-value=1.1e-08  Score=95.42  Aligned_cols=104  Identities=17%  Similarity=0.129  Sum_probs=66.6

Q ss_pred             cCCCCCcEEEEecCCCCCCC--CccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866          116 FVFRSLHRVIIGECHKLKDV--TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS  193 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  193 (261)
                      ..+++|+.|++++|. +...  ..+..+++|++|++++|.-...           .++..+..+++|+.|++.++. ++.
T Consensus       418 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~p~~~~~l~~L~~L~l~~n~-l~~  484 (570)
T 2z63_A          418 LSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQEN-----------FLPDIFTELRNLTFLDLSQCQ-LEQ  484 (570)
T ss_dssp             TTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEECTTCEEGGG-----------EECSCCTTCTTCCEEECTTSC-CCE
T ss_pred             hcCCCCCEEeCcCCc-ccccchhhhhcCCcCcEEECcCCcCccc-----------cchhhhhcccCCCEEECCCCc-ccc
Confidence            456677777776663 3332  1234567777777777642111           122356678999999999885 666


Q ss_pred             cc-CCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          194 IF-WKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       194 i~-~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      +. .....+++|+.|.+++| +++.+|........+|+.++
T Consensus       485 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~  524 (570)
T 2z63_A          485 LSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIW  524 (570)
T ss_dssp             ECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred             CChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEE
Confidence            63 34456899999999998 67777765544456666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.88  E-value=1.9e-09  Score=92.16  Aligned_cols=181  Identities=15%  Similarity=0.116  Sum_probs=123.2

Q ss_pred             eeeEeeeccccccccCCCcchh--hhhhcccCCceEEEEEcc-hHHHHHHhhCcccccceeEEEEcCCCCCCcccccccc
Q 024866            5 GWFNFHEASEESVLFGGGEVLV--QELLGLKYLEVLELTLGS-YQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAF   81 (261)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~-~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l   81 (261)
                      +.|+.++..+..++++.....+  ..+..+++|+.|++.... ...+.  ........+|+.|+++++. +..+.. ..+
T Consensus        50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~  125 (285)
T 1ozn_A           50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD--PATFHGLGRLHTLHLDRCG-LQELGP-GLF  125 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC--TTTTTTCTTCCEEECTTSC-CCCCCT-TTT
T ss_pred             HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC--HHHhcCCcCCCEEECCCCc-CCEECH-hHh
Confidence            3455677788888887754433  467888999999987432 11110  1122234689999999874 344433 567


Q ss_pred             cccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEeccccccccc
Q 024866           82 ADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEII  159 (261)
Q Consensus        82 ~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~  159 (261)
                      ..+++|+.|+++++. +..+..         ...+.+++|+.|+++++ +++.++.  +..+++|++|+++++. +..+.
T Consensus       126 ~~l~~L~~L~l~~n~-l~~~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~  193 (285)
T 1ozn_A          126 RGLAALQYLYLQDNA-LQALPD---------DTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVH  193 (285)
T ss_dssp             TTCTTCCEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEEC
T ss_pred             hCCcCCCEEECCCCc-ccccCH---------hHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccC
Confidence            889999999999875 332211         11356889999999988 5766542  5678999999999974 33332


Q ss_pred             ccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCc
Q 024866          160 SVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCD  213 (261)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~  213 (261)
                      .           ..+..+++|+.|++.+. +++.+... ...+++|+.|.+++++
T Consensus       194 ~-----------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          194 P-----------HAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP  236 (285)
T ss_dssp             T-----------TTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             H-----------hHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCC
Confidence            1           24566899999999987 46665532 3457899999988765

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.88  E-value=2.5e-09  Score=97.63  Aligned_cols=190  Identities=18%  Similarity=0.135  Sum_probs=126.7

Q ss_pred             eeeEeeeccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCccccccccc
Q 024866            5 GWFNFHEASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFA   82 (261)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~   82 (261)
                      +.|+.++..+..++++.....+  ..+..+++|+.|++.......+.  ......+++|+.|+++++. +..++. ..+.
T Consensus        93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~  168 (452)
T 3zyi_A           93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP--SGAFEYLSKLRELWLRNNP-IESIPS-YAFN  168 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC--TTTSSSCTTCCEEECCSCC-CCEECT-TTTT
T ss_pred             HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC--hhhhcccCCCCEEECCCCC-cceeCH-hHHh
Confidence            3455677788888887754444  46778889999988743322111  0112234578899988763 455543 4677


Q ss_pred             ccCCCCeEEEeccCCcceEe--------------cccccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccccCCCCcE
Q 024866           83 DLNHLNELYIFKGIELEELK--------------IDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLVFAPNLKS  146 (261)
Q Consensus        83 ~l~~L~~L~i~~c~~Le~l~--------------~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~  146 (261)
                      .+++|+.|++++|..++.+.              +..... ..+|....+++|+.|+++++ ++..+.  .+..+++|++
T Consensus       169 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~  246 (452)
T 3zyi_A          169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSLKK  246 (452)
T ss_dssp             TCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCCCTTCTTCCEEECTTS-CCSEECGGGGTTCTTCCE
T ss_pred             cCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-cccccccccccccEEECcCC-cCcccCcccccCccCCCE
Confidence            88888888888765555443              222211 23455678899999999988 566552  3567899999


Q ss_pred             EEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCC-ccCCccceeeeccCc
Q 024866          147 LRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKP-LPFTHLKKMAVLMCD  213 (261)
Q Consensus       147 L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C~  213 (261)
                      |+++++. +..+..           ..+..+++|+.|++.+. +++.+.... ..+++|+.|++++.|
T Consensus       247 L~L~~n~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          247 LWVMNSQ-VSLIER-----------NAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             EECTTSC-CCEECT-----------TTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             EEeCCCc-CceECH-----------HHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence            9999874 333322           24456889999999987 577776543 457899999987764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.87  E-value=4.4e-09  Score=90.65  Aligned_cols=157  Identities=18%  Similarity=0.198  Sum_probs=108.1

Q ss_pred             hhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecc
Q 024866           25 LVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKID  104 (261)
Q Consensus        25 ~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~  104 (261)
                      .+..+..+++|+.|.+.......++.    ...+++|+.|+++++ .+..++   .+..+++|+.|+++++. +..+   
T Consensus        38 ~~~~~~~l~~L~~L~l~~~~i~~~~~----~~~l~~L~~L~L~~n-~l~~~~---~l~~l~~L~~L~l~~n~-l~~~---  105 (291)
T 1h6t_A           38 DAVTQNELNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGN-KLTDIK---PLANLKNLGWLFLDENK-VKDL---  105 (291)
T ss_dssp             SEECHHHHHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSS-CCCCCG---GGTTCTTCCEEECCSSC-CCCG---
T ss_pred             cccchhhcCcccEEEccCCCcccChh----HhcCCCCCEEEccCC-ccCCCc---ccccCCCCCEEECCCCc-CCCC---
Confidence            33344556777777776443333322    223457889998886 344442   27788889999888765 3221   


Q ss_pred             cccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEe
Q 024866          105 YTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLD  184 (261)
Q Consensus       105 ~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~  184 (261)
                              +....+++|+.|++.++ ++.++..+..+++|++|++++|. +..+             ..+..+++|+.|+
T Consensus       106 --------~~l~~l~~L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n~-l~~~-------------~~l~~l~~L~~L~  162 (291)
T 1h6t_A          106 --------SSLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNK-ITDI-------------TVLSRLTKLDTLS  162 (291)
T ss_dssp             --------GGGTTCTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCCC-------------GGGGGCTTCSEEE
T ss_pred             --------hhhccCCCCCEEECCCC-cCCCChhhcCCCCCCEEEccCCc-CCcc-------------hhhccCCCCCEEE
Confidence                    22467889999999988 68877777889999999999873 3332             1345689999999


Q ss_pred             ccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866          185 LDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP  219 (261)
Q Consensus       185 L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp  219 (261)
                      +.++ +++.+.. ...+++|+.|.++++ +++.+|
T Consensus       163 L~~N-~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~  194 (291)
T 1h6t_A          163 LEDN-QISDIVP-LAGLTKLQNLYLSKN-HISDLR  194 (291)
T ss_dssp             CCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCBCG
T ss_pred             ccCC-ccccchh-hcCCCccCEEECCCC-cCCCCh
Confidence            9987 4666654 556899999999888 455554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.86  E-value=1.6e-09  Score=94.38  Aligned_cols=186  Identities=15%  Similarity=0.048  Sum_probs=92.7

Q ss_pred             eEeeeccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCccccccccccc
Q 024866            7 FNFHEASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADL   84 (261)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l   84 (261)
                      |+..+..+..++++.....+  ..+..+++|+.|++.........   . ...+++|+.|+++++. +..+      ...
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~-~~~l~~L~~L~Ls~n~-l~~l------~~~   98 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---D-LESLSTLRTLDLNNNY-VQEL------LVG   98 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---E-ETTCTTCCEEECCSSE-EEEE------EEC
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch---h-hhhcCCCCEEECcCCc-cccc------cCC
Confidence            33445566677776654433  45677777777777532211110   0 1123456666666652 2222      222


Q ss_pred             CCCCeEEEecc----------CCcceEecccccccccCC-CCcCCCCCcEEEEecCCCCCCCCc---cccCCCCcEEEEe
Q 024866           85 NHLNELYIFKG----------IELEELKIDYTEIVRKRR-EPFVFRSLHRVIIGECHKLKDVTF---LVFAPNLKSLRLF  150 (261)
Q Consensus        85 ~~L~~L~i~~c----------~~Le~l~~~~~~~~~~~p-~~~~~~~L~~L~l~~C~~l~~l~~---l~~lp~L~~L~i~  150 (261)
                      ++|+.|+++++          ++|+.+.+.........+ ..+.+++|+.|+++++ ++..+..   ...+++|++|+++
T Consensus        99 ~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~  177 (317)
T 3o53_A           99 PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQ  177 (317)
T ss_dssp             TTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECT
T ss_pred             CCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECC
Confidence            44444444332          334444443322211111 2345677777777776 4554321   1346777777777


Q ss_pred             cccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCC
Q 024866          151 DCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPL  220 (261)
Q Consensus       151 ~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~  220 (261)
                      ++. ++.+..             ...+++|+.|+++++. ++.++.....+++|+.|+++++ +++.+|.
T Consensus       178 ~N~-l~~~~~-------------~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~  231 (317)
T 3o53_A          178 YNF-IYDVKG-------------QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEK  231 (317)
T ss_dssp             TSC-CCEEEC-------------CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECT
T ss_pred             CCc-Cccccc-------------ccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCC-cccchhh
Confidence            763 333211             1235666666666542 5555444444566666666665 4445554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.86  E-value=7.6e-09  Score=97.40  Aligned_cols=38  Identities=16%  Similarity=0.075  Sum_probs=19.1

Q ss_pred             cccCCcccEEeccCCcccccccC-CCccCCccceeeeccC
Q 024866          174 ISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMC  212 (261)
Q Consensus       174 ~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C  212 (261)
                      +..+++|+.|++.++. ++.+.. ....+++|+.|+++++
T Consensus       472 ~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          472 LQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             GGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred             hccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCC
Confidence            3445555555555552 444322 2334566666666655

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.84  E-value=9.6e-08  Score=81.05  Aligned_cols=149  Identities=19%  Similarity=0.185  Sum_probs=92.5

Q ss_pred             ccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc
Q 024866           58 KSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF  137 (261)
Q Consensus        58 ~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~  137 (261)
                      +.+|+.|+++++ .+..++. ..+..+++|+.|+++++. +..+..         .....+++|+.|++.++ +++.+..
T Consensus        60 l~~L~~L~l~~n-~l~~i~~-~~~~~l~~L~~L~l~~n~-l~~~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~  126 (270)
T 2o6q_A           60 LTKLRLLYLNDN-KLQTLPA-GIFKELKNLETLWVTDNK-LQALPI---------GVFDQLVNLAELRLDRN-QLKSLPP  126 (270)
T ss_dssp             CTTCCEEECCSS-CCSCCCT-TTTSSCTTCCEEECCSSC-CCCCCT---------TTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred             CCCCCEEECCCC-ccCeeCh-hhhcCCCCCCEEECCCCc-CCcCCH---------hHcccccCCCEEECCCC-ccCeeCH
Confidence            346777777764 3444432 345667777777777654 222210         11245778888888876 4655532


Q ss_pred             --cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCcc
Q 024866          138 --LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCDQ  214 (261)
Q Consensus       138 --l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~  214 (261)
                        +..+++|++|+++++. +..+..           ..+..+++|+.|++.++ +++.+... ...+++|+.|+++++ +
T Consensus       127 ~~~~~l~~L~~L~Ls~n~-l~~~~~-----------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~  192 (270)
T 2o6q_A          127 RVFDSLTKLTYLSLGYNE-LQSLPK-----------GVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-Q  192 (270)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCCCCT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-C
T ss_pred             HHhCcCcCCCEEECCCCc-CCccCH-----------hHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-c
Confidence              4568888888888763 333221           12456788888888876 36666543 335788899988887 6


Q ss_pred             CCCCCCCCccccCCceEEE
Q 024866          215 LRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       215 L~~lp~~~~~~~~~l~~~~  233 (261)
                      ++.+|.........|+.+.
T Consensus       193 l~~~~~~~~~~l~~L~~L~  211 (270)
T 2o6q_A          193 LKRVPEGAFDSLEKLKMLQ  211 (270)
T ss_dssp             CSCCCTTTTTTCTTCCEEE
T ss_pred             CCcCCHHHhccccCCCEEE
Confidence            7777765544445666544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.84  E-value=4.9e-09  Score=98.71  Aligned_cols=206  Identities=17%  Similarity=0.130  Sum_probs=102.0

Q ss_pred             eeccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCe
Q 024866           10 HEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNE   89 (261)
Q Consensus        10 ~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~   89 (261)
                      ++..+..++++.....-..+..+++|+.|++..................++|+.|+++++. +..++  ..+..+++|+.
T Consensus       327 l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~--~~~~~l~~L~~  403 (606)
T 3vq2_A          327 LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMS--ANFMGLEELQH  403 (606)
T ss_dssp             CSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEEC--CCCTTCTTCCE
T ss_pred             CCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccch--hhccCCCCCCe
Confidence            4445555555542222224555666666666532211110000000112356666666653 23332  34555666666


Q ss_pred             EEEeccC--------------CcceEecccccccccCC-CCcCCCCCcEEEEecCCCCCC--C-CccccCCCCcEEEEec
Q 024866           90 LYIFKGI--------------ELEELKIDYTEIVRKRR-EPFVFRSLHRVIIGECHKLKD--V-TFLVFAPNLKSLRLFD  151 (261)
Q Consensus        90 L~i~~c~--------------~Le~l~~~~~~~~~~~p-~~~~~~~L~~L~l~~C~~l~~--l-~~l~~lp~L~~L~i~~  151 (261)
                      |+++++.              .|+.+.+......+..| ..+.+++|+.|++.+| ++.+  + ..++.+++|++|++++
T Consensus       404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~  482 (606)
T 3vq2_A          404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSK  482 (606)
T ss_dssp             EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTT
T ss_pred             eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCC
Confidence            6655442              11111111111001111 1244566666666655 2332  1 1234566666666666


Q ss_pred             ccccccccccccccccCcccCCcccCCcccEEeccCCcccccc-cCCCccCCccceeeeccCccCCCCCCCCccccCCce
Q 024866          152 CGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSI-FWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKF  230 (261)
Q Consensus       152 C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i-~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~  230 (261)
                      |. +..+.           +..+..+++|++|++.++. ++.+ +.....+++|+.|++++|. ++.+|......+.+|+
T Consensus       483 n~-l~~~~-----------~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~  548 (606)
T 3vq2_A          483 CQ-LEQIS-----------WGVFDTLHRLQLLNMSHNN-LLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLA  548 (606)
T ss_dssp             SC-CCEEC-----------TTTTTTCTTCCEEECCSSC-CSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCC
T ss_pred             Cc-CCccC-----------hhhhcccccCCEEECCCCc-CCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCc
Confidence            52 22222           2245678899999999884 6555 3344568899999999985 7788876333223466


Q ss_pred             EEE
Q 024866          231 VIR  233 (261)
Q Consensus       231 ~~~  233 (261)
                      .+.
T Consensus       549 ~l~  551 (606)
T 3vq2_A          549 FFN  551 (606)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            544

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.84  E-value=6.1e-09  Score=98.90  Aligned_cols=150  Identities=17%  Similarity=0.211  Sum_probs=106.9

Q ss_pred             hhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEeccc
Q 024866           26 VQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDY  105 (261)
Q Consensus        26 l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~  105 (261)
                      +..+..|.+|+.|.+.......++    ....+++|+.|+|+++. +..++   .+..+++|+.|++++|. +..     
T Consensus        36 ~~~~~~L~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N~-l~~~~---~l~~l~~L~~L~Ls~N~-l~~-----  101 (605)
T 1m9s_A           36 AVTQNELNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNK-LTDIK---PLTNLKNLGWLFLDENK-IKD-----  101 (605)
T ss_dssp             EECHHHHTTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTSC-CCCCG---GGGGCTTCCEEECCSSC-CCC-----
T ss_pred             ccchhcCCCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCCC-CCCCh---hhccCCCCCEEECcCCC-CCC-----
Confidence            334555666666666543333222    22335689999999873 45552   37889999999999875 332     


Q ss_pred             ccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEec
Q 024866          106 TEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDL  185 (261)
Q Consensus       106 ~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L  185 (261)
                            ++....+++|+.|++++| ++.++..+..+++|+.|++++|. +..+             ..+..+++|+.|+|
T Consensus       102 ------l~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~l-------------~~l~~l~~L~~L~L  160 (605)
T 1m9s_A          102 ------LSSLKDLKKLKSLSLEHN-GISDINGLVHLPQLESLYLGNNK-ITDI-------------TVLSRLTKLDTLSL  160 (605)
T ss_dssp             ------CTTSTTCTTCCEEECTTS-CCCCCGGGGGCTTCSEEECCSSC-CCCC-------------GGGGSCTTCSEEEC
T ss_pred             ------ChhhccCCCCCEEEecCC-CCCCCccccCCCccCEEECCCCc-cCCc-------------hhhcccCCCCEEEC
Confidence                  234577899999999998 58887777889999999999973 3332             13456899999999


Q ss_pred             cCCcccccccCCCccCCccceeeeccC
Q 024866          186 DDLPHLKSIFWKPLPFTHLKKMAVLMC  212 (261)
Q Consensus       186 ~~~~~L~~i~~~~~~~p~L~~L~i~~C  212 (261)
                      +++. +..+.. ...+++|+.|.+++|
T Consensus       161 s~N~-l~~~~~-l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          161 EDNQ-ISDIVP-LAGLTKLQNLYLSKN  185 (605)
T ss_dssp             CSSC-CCCCGG-GTTCTTCCEEECCSS
T ss_pred             cCCc-CCCchh-hccCCCCCEEECcCC
Confidence            9874 666654 556899999999887

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.84  E-value=7.3e-09  Score=96.28  Aligned_cols=192  Identities=16%  Similarity=0.102  Sum_probs=111.6

Q ss_pred             eeeccccccccCCCcchhh-hh-hcccCCceEEEEEcchHH-HHHHhhCcccccceeEEEEcCCCCCCcccc-ccccccc
Q 024866            9 FHEASEESVLFGGGEVLVQ-EL-LGLKYLEVLELTLGSYQA-LQILLSSNKLKSCIRSLQLRLVRDTPSIID-ATAFADL   84 (261)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~-eL-~~L~~L~~L~i~~~~~~~-l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~-~~~l~~l   84 (261)
                      +.+..+..++.+.....+. .+ +.+++|+.|++....... ...........++|+.|+++++ .+..++. ...+..+
T Consensus       308 ~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l  386 (549)
T 2z81_A          308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTL  386 (549)
T ss_dssp             HSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGC
T ss_pred             hcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcC
Confidence            3445566666665433332 22 468888888887543322 1111222233467899999987 4454431 1346788


Q ss_pred             CCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccc
Q 024866           85 NHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKI  164 (261)
Q Consensus        85 ~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~  164 (261)
                      ++|+.|+++++. +..+          +.....+++|+.|+++++ +++.++. ...++|++|++++| .++.++     
T Consensus       387 ~~L~~L~Ls~N~-l~~l----------p~~~~~~~~L~~L~Ls~N-~l~~l~~-~~~~~L~~L~Ls~N-~l~~~~-----  447 (549)
T 2z81_A          387 KNLTSLDISRNT-FHPM----------PDSCQWPEKMRFLNLSST-GIRVVKT-CIPQTLEVLDVSNN-NLDSFS-----  447 (549)
T ss_dssp             TTCCEEECTTCC-CCCC----------CSCCCCCTTCCEEECTTS-CCSCCCT-TSCTTCSEEECCSS-CCSCCC-----
T ss_pred             CCCCEEECCCCC-CccC----------ChhhcccccccEEECCCC-Ccccccc-hhcCCceEEECCCC-Chhhhc-----
Confidence            999999998873 4322          112345678888888877 4655431 22467888888776 333221     


Q ss_pred             cccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          165 AETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       165 ~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                                ..+++|+.|++.++ +++.++. ...+++|+.|+++++ +++.+|.........|+.++
T Consensus       448 ----------~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~  503 (549)
T 2z81_A          448 ----------LFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIW  503 (549)
T ss_dssp             ----------CCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEE
T ss_pred             ----------ccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEE
Confidence                      24677777777776 4666654 335677777777776 55666554333334555443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.84  E-value=6e-09  Score=89.88  Aligned_cols=191  Identities=18%  Similarity=0.136  Sum_probs=93.0

Q ss_pred             eeeEeeeccccccccCCCcchh----hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCccccccc
Q 024866            5 GWFNFHEASEESVLFGGGEVLV----QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATA   80 (261)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l----~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~   80 (261)
                      ++|+-++..+..++++.....+    .....+++|+.|++.......   +........+|++|+++++. +..++....
T Consensus        46 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~---l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~  121 (306)
T 2z66_A           46 GVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT---MSSNFLGLEQLEHLDFQHSN-LKQMSEFSV  121 (306)
T ss_dssp             TTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE---EEEEEETCTTCCEEECTTSE-EESSTTTTT
T ss_pred             hHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc---ChhhcCCCCCCCEEECCCCc-ccccccchh
Confidence            3455556666666666543322    344456667666665322111   11111223456666666542 222221124


Q ss_pred             ccccCCCCeEEEecc-------------CCcceEecccccccc--cCCCCcCCCCCcEEEEecCCCCCCC--CccccCCC
Q 024866           81 FADLNHLNELYIFKG-------------IELEELKIDYTEIVR--KRREPFVFRSLHRVIIGECHKLKDV--TFLVFAPN  143 (261)
Q Consensus        81 l~~l~~L~~L~i~~c-------------~~Le~l~~~~~~~~~--~~p~~~~~~~L~~L~l~~C~~l~~l--~~l~~lp~  143 (261)
                      +..+++|+.|+++++             .+|+.+.+......+  .+.....+++|+.|+++++ ++..+  ..+..+++
T Consensus       122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~  200 (306)
T 2z66_A          122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSS  200 (306)
T ss_dssp             TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred             hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCC
Confidence            556666666666543             233333333222111  1222455667777777766 45443  23445677


Q ss_pred             CcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC-CCccCC-ccceeeeccCc
Q 024866          144 LKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFT-HLKKMAVLMCD  213 (261)
Q Consensus       144 L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p-~L~~L~i~~C~  213 (261)
                      |++|+++++. +..+..           ..+..+++|+.|++.++. ++.... ....+| +|+.|++++++
T Consensus       201 L~~L~L~~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          201 LQVLNMSHNN-FFSLDT-----------FPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CCEEECTTSC-CSBCCS-----------GGGTTCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             CCEEECCCCc-cCccCh-----------hhccCcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence            7777777653 222211           123446677777777663 443322 223343 66666665543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.83  E-value=3e-09  Score=98.39  Aligned_cols=39  Identities=10%  Similarity=-0.067  Sum_probs=20.6

Q ss_pred             cccCCcccEEeccCCcccccccCCCccCCccceeeeccCc
Q 024866          174 ISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD  213 (261)
Q Consensus       174 ~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~  213 (261)
                      +..+++|+.|++++.. +..++.....+++|+.|.+++++
T Consensus       210 ~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          210 FQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             GGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred             HcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCC
Confidence            3345556666665532 45554444445566666665543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.82  E-value=1.7e-08  Score=85.72  Aligned_cols=174  Identities=20%  Similarity=0.177  Sum_probs=118.8

Q ss_pred             eccccccccCCCcchhh--hhhcccCCceEEEEEcchHHHHHHhhC-cccccceeEEEEcCCCCCCcccccccccccCCC
Q 024866           11 EASEESVLFGGGEVLVQ--ELLGLKYLEVLELTLGSYQALQILLSS-NKLKSCIRSLQLRLVRDTPSIIDATAFADLNHL   87 (261)
Q Consensus        11 ~~~~~~~~~~~~~~~l~--eL~~L~~L~~L~i~~~~~~~l~~l~~~-~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L   87 (261)
                      +..+..++++.....+.  .+..+++|+.|++.......   +... ...+.+|++|+++++ .+..++. ..+..+++|
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L  111 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT---LPAGIFKELKNLETLWVTDN-KLQALPI-GVFDQLVNL  111 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC---CCTTTTSSCTTCCEEECCSS-CCCCCCT-TTTTTCSSC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe---eChhhhcCCCCCCEEECCCC-cCCcCCH-hHcccccCC
Confidence            34566777766544443  47788999999987433221   1111 123468999999986 4555543 457889999


Q ss_pred             CeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEeccccccccccccccc
Q 024866           88 NELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIA  165 (261)
Q Consensus        88 ~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~  165 (261)
                      +.|+++++. +..+..         .....+++|+.|+++++ +++.++.  +..+++|++|+++++. ++.+..     
T Consensus       112 ~~L~l~~n~-l~~~~~---------~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-----  174 (270)
T 2o6q_A          112 AELRLDRNQ-LKSLPP---------RVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPE-----  174 (270)
T ss_dssp             CEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCT-----
T ss_pred             CEEECCCCc-cCeeCH---------HHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCc-CcEeCh-----
Confidence            999999865 332210         11357899999999998 5776643  5678999999999873 443322     


Q ss_pred             ccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCc
Q 024866          166 ETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCD  213 (261)
Q Consensus       166 ~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~  213 (261)
                            ..+..+++|+.|++.+. +++.++.. ...+++|+.|.++++|
T Consensus       175 ------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          175 ------GAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             ------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ------hHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence                  13456899999999987 57777654 3458899999998765

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.82  E-value=1.1e-08  Score=99.61  Aligned_cols=38  Identities=13%  Similarity=0.034  Sum_probs=21.4

Q ss_pred             cCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccc
Q 024866          116 FVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCG  153 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~  153 (261)
                      ..+++|+.|++++|.--..++.++.+++|++|++++|.
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~  234 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK  234 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc
Confidence            45666666666666322223334556666666666653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.81  E-value=4.6e-09  Score=92.63  Aligned_cols=33  Identities=15%  Similarity=0.016  Sum_probs=19.2

Q ss_pred             cCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          200 PFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       200 ~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      .+++|+.|+++++ +++.+|........+|+.++
T Consensus       275 ~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~  307 (353)
T 2z80_A          275 QISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIW  307 (353)
T ss_dssp             TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCCCEEECCCC-CCCccCHHHHhcCCCCCEEE
Confidence            4567777777776 45666655433345555543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.78  E-value=1.4e-08  Score=86.30  Aligned_cols=158  Identities=16%  Similarity=0.183  Sum_probs=105.1

Q ss_pred             ccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCC
Q 024866           18 LFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIE   97 (261)
Q Consensus        18 ~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~   97 (261)
                      +.......+..+..+++|+.|++.......++    ....+.+|+.|+++++ .+..++   .+..+++|+.|+++++. 
T Consensus        26 l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~L~~N-~i~~~~---~l~~l~~L~~L~L~~N~-   96 (263)
T 1xeu_A           26 LGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA----GMQFFTNLKELHLSHN-QISDLS---PLKDLTKLEELSVNRNR-   96 (263)
T ss_dssp             HTCSCTTSEECHHHHTTCSEEECTTSCCCCCT----TGGGCTTCCEEECCSS-CCCCCG---GGTTCSSCCEEECCSSC-
T ss_pred             hcCCCcccccchhhcCcCcEEECcCCCcccch----HHhhCCCCCEEECCCC-ccCCCh---hhccCCCCCEEECCCCc-
Confidence            33444444445666777888877754433322    1223457888888876 445553   27788888888888764 


Q ss_pred             cceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccC
Q 024866           98 LEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPF  177 (261)
Q Consensus        98 Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~  177 (261)
                      +..+           +.... ++|+.|+++++ +++++..+..+++|++|+++++. ++.+.             .+..+
T Consensus        97 l~~l-----------~~~~~-~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~Ls~N~-i~~~~-------------~l~~l  149 (263)
T 1xeu_A           97 LKNL-----------NGIPS-ACLSRLFLDNN-ELRDTDSLIHLKNLEILSIRNNK-LKSIV-------------MLGFL  149 (263)
T ss_dssp             CSCC-----------TTCCC-SSCCEEECCSS-CCSBSGGGTTCTTCCEEECTTSC-CCBCG-------------GGGGC
T ss_pred             cCCc-----------Ccccc-CcccEEEccCC-ccCCChhhcCcccccEEECCCCc-CCCCh-------------HHccC
Confidence            3322           22122 88999999988 68777777788999999998863 44331             34567


Q ss_pred             CcccEEeccCCcccccccCCCccCCccceeeeccCc
Q 024866          178 ENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD  213 (261)
Q Consensus       178 p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~  213 (261)
                      ++|+.|++.++. ++.+ .....+++|+.|.+++++
T Consensus       150 ~~L~~L~L~~N~-i~~~-~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          150 SKLEVLDLHGNE-ITNT-GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TTCCEEECTTSC-CCBC-TTSTTCCCCCEEEEEEEE
T ss_pred             CCCCEEECCCCc-Ccch-HHhccCCCCCEEeCCCCc
Confidence            899999998864 5555 335568899999988874

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=5.9e-08  Score=95.70  Aligned_cols=170  Identities=13%  Similarity=0.083  Sum_probs=92.8

Q ss_pred             hhhhhhcccCCceEEEEEcchHH--------------H-HHHhhCcc--cccceeEEEEcCCCCCCcccccccccccCCC
Q 024866           25 LVQELLGLKYLEVLELTLGSYQA--------------L-QILLSSNK--LKSCIRSLQLRLVRDTPSIIDATAFADLNHL   87 (261)
Q Consensus        25 ~l~eL~~L~~L~~L~i~~~~~~~--------------l-~~l~~~~~--l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L   87 (261)
                      ...++..+++|+.|++.......              + ..++....  -+++|+.|+|++|.-...++  ..++++++|
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP--~~l~~L~~L  517 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP--DFLYDLPEL  517 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC--GGGGGCSSC
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh--HHHhCCCCC
Confidence            34568889999999998543222              0 01333333  45689999999987655554  578899999


Q ss_pred             CeEEEeccC----------------------CcceEecccccccccCCC---CcCCCCCcEEEEecCCCCCCCCccccCC
Q 024866           88 NELYIFKGI----------------------ELEELKIDYTEIVRKRRE---PFVFRSLHRVIIGECHKLKDVTFLVFAP  142 (261)
Q Consensus        88 ~~L~i~~c~----------------------~Le~l~~~~~~~~~~~p~---~~~~~~L~~L~l~~C~~l~~l~~l~~lp  142 (261)
                      +.|+++++.                      +|+.+.+...... .+|.   .+.+++|+.|+++++ ++..++.++.++
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N-~l~~lp~~~~L~  595 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNV  595 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS-CCCBCCCCCTTS
T ss_pred             CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC-CcccchhhcCCC
Confidence            999999886                      3333333322221 2222   344555555555554 233444344455


Q ss_pred             CCcEEEEecccccccccccccccccCcccCCcccCCc-ccEEeccCCcccccccCCCcc--CCccceeeeccC
Q 024866          143 NLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFEN-LQSLDLDDLPHLKSIFWKPLP--FTHLKKMAVLMC  212 (261)
Q Consensus       143 ~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~-L~~L~L~~~~~L~~i~~~~~~--~p~L~~L~i~~C  212 (261)
                      +|++|+++++. +..            ++..+..+++ |+.|++.++. ++.++.....  .++|+.|.+++|
T Consensus       596 ~L~~L~Ls~N~-l~~------------lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N  654 (876)
T 4ecn_A          596 KLTDLKLDYNQ-IEE------------IPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN  654 (876)
T ss_dssp             EESEEECCSSC-CSC------------CCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSS
T ss_pred             cceEEECcCCc-ccc------------chHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCC
Confidence            55555555542 221            2223444555 6666665543 4444322111  123555555544

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.74  E-value=1.3e-07  Score=74.34  Aligned_cols=134  Identities=19%  Similarity=0.185  Sum_probs=96.7

Q ss_pred             ccceeEEEEcCCCCCC--cccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCC-
Q 024866           58 KSCIRSLQLRLVRDTP--SIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKD-  134 (261)
Q Consensus        58 ~~~L~~L~L~~c~~l~--~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~-  134 (261)
                      .++++.|+++++. +.  .++  ..+..+++|+.|++++|. +..+           +....+++|+.|+++++ ++.. 
T Consensus        23 ~~~L~~L~l~~n~-l~~~~i~--~~~~~l~~L~~L~l~~n~-l~~~-----------~~~~~l~~L~~L~Ls~N-~l~~~   86 (168)
T 2ell_A           23 PAAVRELVLDNCK-SNDGKIE--GLTAEFVNLEFLSLINVG-LISV-----------SNLPKLPKLKKLELSEN-RIFGG   86 (168)
T ss_dssp             TTSCSEEECCSCB-CBTTBCS--SCCGGGGGCCEEEEESSC-CCCC-----------SSCCCCSSCCEEEEESC-CCCSC
T ss_pred             cccCCEEECCCCC-CChhhHH--HHHHhCCCCCEEeCcCCC-CCCh-----------hhhccCCCCCEEECcCC-cCchH
Confidence            4689999999985 34  443  456889999999999986 5433           22356899999999998 5666 


Q ss_pred             CCcc-ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC----CCccCCccceeee
Q 024866          135 VTFL-VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW----KPLPFTHLKKMAV  209 (261)
Q Consensus       135 l~~l-~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~----~~~~~p~L~~L~i  209 (261)
                      ++.. ..+++|++|++++| .++.+...          ..+..+++|+.|++.+++ +..++.    ....+++|+.|++
T Consensus        87 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~----------~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l  154 (168)
T 2ell_A           87 LDMLAEKLPNLTHLNLSGN-KLKDISTL----------EPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDG  154 (168)
T ss_dssp             CCHHHHHCTTCCEEECBSS-SCCSSGGG----------GGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETT
T ss_pred             HHHHHhhCCCCCEEeccCC-ccCcchhH----------HHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecC
Confidence            4333 45999999999998 44443210          144568999999999875 666654    3446899999999


Q ss_pred             ccCccCCCCCC
Q 024866          210 LMCDQLRKPPL  220 (261)
Q Consensus       210 ~~C~~L~~lp~  220 (261)
                      .+|. ++.+|.
T Consensus       155 ~~n~-~~~~~~  164 (168)
T 2ell_A          155 YDRE-DQEAPD  164 (168)
T ss_dssp             EETT-SCBCCS
T ss_pred             CCCC-hhhccc
Confidence            9985 445554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.74  E-value=7.6e-09  Score=90.03  Aligned_cols=166  Identities=13%  Similarity=0.049  Sum_probs=82.4

Q ss_pred             cccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEecc--------CCcceEe
Q 024866           31 GLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKG--------IELEELK  102 (261)
Q Consensus        31 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c--------~~Le~l~  102 (261)
                      .+++|+.|+++......+..  .....+.+|+.|+++++. +..+   ..+..+++|+.|+++++        +.|+.+.
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~Ls~n~-l~~~---~~~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~  105 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISA--ADLAPFTKLELLNLSSNV-LYET---LDLESLSTLRTLDLNNNYVQELLVGPSIETLH  105 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCH--HHHTTCTTCCEEECTTSC-CEEE---EEETTCTTCCEEECCSSEEEEEEECTTCCEEE
T ss_pred             cCCCCCEEECcCCccCcCCH--HHhhCCCcCCEEECCCCc-CCcc---hhhhhcCCCCEEECcCCccccccCCCCcCEEE
Confidence            34566666665332221110  001123467777777653 2322   22566777777777655        2334443


Q ss_pred             cccccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcc
Q 024866          103 IDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENL  180 (261)
Q Consensus       103 ~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L  180 (261)
                      +......+. +. ..+++|+.|++.++ +++.+.  ....+++|++|+++++. +..+....          -...+++|
T Consensus       106 l~~n~l~~~-~~-~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~----------~~~~l~~L  171 (317)
T 3o53_A          106 AANNNISRV-SC-SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAE----------LAASSDTL  171 (317)
T ss_dssp             CCSSCCSEE-EE-CCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGG----------GGGGTTTC
T ss_pred             CCCCccCCc-Cc-cccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHH----------HhhccCcC
Confidence            322221111 11 34667777777766 455442  23456777777777652 33222100          11235677


Q ss_pred             cEEeccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866          181 QSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP  219 (261)
Q Consensus       181 ~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp  219 (261)
                      +.|++.++. ++.+.. ...+++|+.|.++++ +++.+|
T Consensus       172 ~~L~L~~N~-l~~~~~-~~~l~~L~~L~Ls~N-~l~~l~  207 (317)
T 3o53_A          172 EHLNLQYNF-IYDVKG-QVVFAKLKTLDLSSN-KLAFMG  207 (317)
T ss_dssp             CEEECTTSC-CCEEEC-CCCCTTCCEEECCSS-CCCEEC
T ss_pred             CEEECCCCc-Cccccc-ccccccCCEEECCCC-cCCcch
Confidence            777777654 555532 223677777777665 333443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.73  E-value=5.9e-09  Score=91.91  Aligned_cols=202  Identities=15%  Similarity=0.077  Sum_probs=117.7

Q ss_pred             eeEeeeccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccc
Q 024866            6 WFNFHEASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFAD   83 (261)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~   83 (261)
                      .|+.++..+..++++.....+  ..+..+++|+.|++.......+..-  ......+|++|+++++ .+..++....+..
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~  147 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSS--WFKPLSSLTFLNLLGN-PYKTLGETSLFSH  147 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHH--HHTTCTTCSEEECTTC-CCSSSCSSCSCTT
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHh--HhCCCccCCEEECCCC-CCcccCchhhhcc
Confidence            455667788888887765444  4578889999999875432222110  0112357899999886 4455532135778


Q ss_pred             cCCCCeEEEeccCCcceEecc--------------ccccccc-CCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcE
Q 024866           84 LNHLNELYIFKGIELEELKID--------------YTEIVRK-RREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKS  146 (261)
Q Consensus        84 l~~L~~L~i~~c~~Le~l~~~--------------~~~~~~~-~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~  146 (261)
                      +++|+.|+++++..+..+...              .....+. +.....+++|++|++.++. +..++.  ...+++|++
T Consensus       148 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~  226 (353)
T 2z80_A          148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVEC  226 (353)
T ss_dssp             CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEE
T ss_pred             CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccE
Confidence            899999999988655544211              1100011 1123455666666666652 333321  234677777


Q ss_pred             EEEecccccccccccccc-----cc---------------cCcccCCcccCCcccEEeccCCcccccccCCC-ccCCccc
Q 024866          147 LRLFDCGAMEEIISVGKI-----AE---------------TPEMMGHISPFENLQSLDLDDLPHLKSIFWKP-LPFTHLK  205 (261)
Q Consensus       147 L~i~~C~~L~~i~~~~~~-----~~---------------~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~p~L~  205 (261)
                      |+++++. +..+......     ..               ...++..+..+++|+.|++.++ +++.++... ..+++|+
T Consensus       227 L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~  304 (353)
T 2z80_A          227 LELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQ  304 (353)
T ss_dssp             EEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCC
T ss_pred             EECCCCc-cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCC
Confidence            7777753 2222110000     00               0012223456889999999987 478887654 5789999


Q ss_pred             eeeeccCc
Q 024866          206 KMAVLMCD  213 (261)
Q Consensus       206 ~L~i~~C~  213 (261)
                      +|++++++
T Consensus       305 ~L~L~~N~  312 (353)
T 2z80_A          305 KIWLHTNP  312 (353)
T ss_dssp             EEECCSSC
T ss_pred             EEEeeCCC
Confidence            99998885

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.72  E-value=5.6e-08  Score=82.59  Aligned_cols=147  Identities=20%  Similarity=0.184  Sum_probs=75.0

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC---
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV---  135 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l---  135 (261)
                      ++|+.|+++++ .+..++. ..+..+++|+.|+++++. +..+.         ....+.+++|+.|+++++ ++..+   
T Consensus        76 ~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~---------~~~~~~l~~L~~L~l~~n-~l~~~~l~  142 (276)
T 2z62_A           76 SHLSTLILTGN-PIQSLAL-GAFSGLSSLQKLVAVETN-LASLE---------NFPIGHLKTLKELNVAHN-LIQSFKLP  142 (276)
T ss_dssp             TTCCEEECTTC-CCCEECT-TTTTTCTTCCEEECTTSC-CCCST---------TCCCTTCTTCCEEECCSS-CCCCCCCC
T ss_pred             cCCCEEECCCC-ccCccCh-hhhcCCccccEEECCCCC-ccccC---------chhcccCCCCCEEECcCC-ccceecCc
Confidence            35555555554 2233322 334555556655555443 11110         001356778888888776 45442   


Q ss_pred             CccccCCCCcEEEEecccccccccccccccccCcccCCcccCCccc----EEeccCCcccccccCCCccCCccceeeecc
Q 024866          136 TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQ----SLDLDDLPHLKSIFWKPLPFTHLKKMAVLM  211 (261)
Q Consensus       136 ~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~----~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~  211 (261)
                      ..+..+++|++|+++++. ++.+...           .+..+++|+    +|++.+.. ++.+........+|+.|++++
T Consensus       143 ~~~~~l~~L~~L~Ls~N~-l~~~~~~-----------~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~  209 (276)
T 2z62_A          143 EYFSNLTNLEHLDLSSNK-IQSIYCT-----------DLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDT  209 (276)
T ss_dssp             GGGGGCTTCCEEECCSSC-CCEECGG-----------GGHHHHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCS
T ss_pred             hhhccCCCCCEEECCCCC-CCcCCHH-----------HhhhhhhccccceeeecCCCc-ccccCccccCCCcccEEECCC
Confidence            234567888888887763 3333211           112233333    55555533 555544444455677777777


Q ss_pred             CccCCCCCCCCccccCCceEE
Q 024866          212 CDQLRKPPLDSNSAKERKFVI  232 (261)
Q Consensus       212 C~~L~~lp~~~~~~~~~l~~~  232 (261)
                      +. ++.+|........+|+.+
T Consensus       210 n~-l~~~~~~~~~~l~~L~~L  229 (276)
T 2z62_A          210 NQ-LKSVPDGIFDRLTSLQKI  229 (276)
T ss_dssp             SC-CSCCCTTTTTTCCSCCEE
T ss_pred             Cc-eeecCHhHhcccccccEE
Confidence            64 666665443334455544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.72  E-value=1.6e-08  Score=95.63  Aligned_cols=196  Identities=15%  Similarity=0.130  Sum_probs=103.4

Q ss_pred             eeeEeeeccccccccCCCcchhhh--hhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCccccccccc
Q 024866            5 GWFNFHEASEESVLFGGGEVLVQE--LLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFA   82 (261)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~e--L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~   82 (261)
                      +.|+.++..+..++++.....+..  +..+++|+.|++.......+.  ......+++|+.|+++++. +..++    ++
T Consensus       117 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~----~~  189 (597)
T 3oja_B          117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE--DDTFQATTSLQNLQLSSNR-LTHVD----LS  189 (597)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC--TTTTTTCTTCCEEECTTSC-CSBCC----GG
T ss_pred             HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC--hhhhhcCCcCcEEECcCCC-CCCcC----hh
Confidence            345667777888887776444332  567888888888743321110  1112234577888887753 33332    23


Q ss_pred             ccCCCCeEEEe-------------------ccC----------CcceEecccccccccCCCCcCCCCCcEEEEecCCCCC
Q 024866           83 DLNHLNELYIF-------------------KGI----------ELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLK  133 (261)
Q Consensus        83 ~l~~L~~L~i~-------------------~c~----------~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~  133 (261)
                      .+++|+.|+++                   ++.          +|+.+.+..... ..++..+.+++|+.|+++++ .+.
T Consensus       190 ~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l-~~~~~l~~l~~L~~L~Ls~N-~l~  267 (597)
T 3oja_B          190 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNL-TDTAWLLNYPGLVEVDLSYN-ELE  267 (597)
T ss_dssp             GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCC-CCCGGGGGCTTCSEEECCSS-CCC
T ss_pred             hhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCC-CCChhhccCCCCCEEECCCC-ccC
Confidence            33444444333                   221          122222221111 11222345666666666665 344


Q ss_pred             CC--CccccCCCCcEEEEecccccccccccccc-c----------ccCcccCCcccCCcccEEeccCCcccccccCCCcc
Q 024866          134 DV--TFLVFAPNLKSLRLFDCGAMEEIISVGKI-A----------ETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLP  200 (261)
Q Consensus       134 ~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~-~----------~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~  200 (261)
                      .+  ..++.+++|++|+++++ .+..+...... .          ....++..+..+++|+.|++.++. +..+.  ...
T Consensus       268 ~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~  343 (597)
T 3oja_B          268 KIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLK--LST  343 (597)
T ss_dssp             EEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCT
T ss_pred             CCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCC-CCCcC--hhh
Confidence            33  12345566666666654 22222111000 0          011234455678999999999976 66664  557


Q ss_pred             CCccceeeeccCc
Q 024866          201 FTHLKKMAVLMCD  213 (261)
Q Consensus       201 ~p~L~~L~i~~C~  213 (261)
                      +++|+.|.+++++
T Consensus       344 ~~~L~~L~l~~N~  356 (597)
T 3oja_B          344 HHTLKNLTLSHND  356 (597)
T ss_dssp             TCCCSEEECCSSC
T ss_pred             cCCCCEEEeeCCC
Confidence            8999999998875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.70  E-value=5.7e-08  Score=88.10  Aligned_cols=80  Identities=15%  Similarity=0.054  Sum_probs=38.3

Q ss_pred             ccccccccCCCcch--hhhhhcccCCceEEEEEcchH-HHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCC
Q 024866           12 ASEESVLFGGGEVL--VQELLGLKYLEVLELTLGSYQ-ALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLN   88 (261)
Q Consensus        12 ~~~~~~~~~~~~~~--l~eL~~L~~L~~L~i~~~~~~-~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~   88 (261)
                      ..+..++++.....  ...+..+++|+.|++...... .+.  ......+++|++|+++++. +..+.. ..++.+++|+
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~--~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~  106 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR--NNTFRGLSSLIILKLDYNQ-FLQLET-GAFNGLANLE  106 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEEC--TTTTTTCTTCCEEECTTCT-TCEECT-TTTTTCTTCC
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceEC--cccccccccCCEEeCCCCc-cCccCh-hhccCcccCC
Confidence            34555665554333  245666677777766633211 000  0111123456666666643 233322 3455566666


Q ss_pred             eEEEecc
Q 024866           89 ELYIFKG   95 (261)
Q Consensus        89 ~L~i~~c   95 (261)
                      +|++++|
T Consensus       107 ~L~L~~n  113 (455)
T 3v47_A          107 VLTLTQC  113 (455)
T ss_dssp             EEECTTS
T ss_pred             EEeCCCC
Confidence            6666554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.70  E-value=1.3e-07  Score=81.41  Aligned_cols=100  Identities=15%  Similarity=0.103  Sum_probs=64.3

Q ss_pred             cCCCCCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866          116 FVFRSLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS  193 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  193 (261)
                      ..+++|+.|+++++ +++.++  .+..+++|++|+++++ .+..+..           ..+..+++|+.|++.+. +++.
T Consensus        97 ~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~  162 (290)
T 1p9a_G           97 QTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPP-----------GLLTPTPKLEKLSLANN-NLTE  162 (290)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCT-----------TTTTTCTTCCEEECTTS-CCSC
T ss_pred             ccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CCCccCh-----------hhcccccCCCEEECCCC-cCCc
Confidence            45667777777765 455553  2355677777777765 3333221           13456789999999886 4777


Q ss_pred             ccCCC-ccCCccceeeeccCccCCCCCCCCccccCCceE
Q 024866          194 IFWKP-LPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFV  231 (261)
Q Consensus       194 i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~  231 (261)
                      ++.+. ..+++|+.|.++++ +++.+|...... ..++.
T Consensus       163 l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~-~~L~~  199 (290)
T 1p9a_G          163 LPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGS-HLLPF  199 (290)
T ss_dssp             CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CCCSE
T ss_pred             cCHHHhcCcCCCCEEECCCC-cCCccChhhccc-ccCCe
Confidence            77654 35899999999887 467788654432 34444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.70  E-value=2.7e-07  Score=77.38  Aligned_cols=80  Identities=18%  Similarity=0.125  Sum_probs=34.8

Q ss_pred             ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--c
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--F  137 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~  137 (261)
                      .++.|+++++. +..+.. ..+..+++|++|+++++. +..+..         .....+++|+.|+++++ +++.+.  .
T Consensus        36 ~l~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~---------~~~~~l~~L~~L~L~~n-~l~~~~~~~  102 (251)
T 3m19_A           36 DTEKLDLQSTG-LATLSD-ATFRGLTKLTWLNLDYNQ-LQTLSA---------GVFDDLTELGTLGLANN-QLASLPLGV  102 (251)
T ss_dssp             TCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSC-CCCCCT---------TTTTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred             CCCEEEccCCC-cCccCH-hHhcCcccCCEEECCCCc-CCccCH---------hHhccCCcCCEEECCCC-cccccChhH
Confidence            45555555532 233322 334555555555555542 221100         01134455555555554 344332  1


Q ss_pred             cccCCCCcEEEEecc
Q 024866          138 LVFAPNLKSLRLFDC  152 (261)
Q Consensus       138 l~~lp~L~~L~i~~C  152 (261)
                      +..+++|++|+++++
T Consensus       103 ~~~l~~L~~L~L~~N  117 (251)
T 3m19_A          103 FDHLTQLDKLYLGGN  117 (251)
T ss_dssp             TTTCTTCCEEECCSS
T ss_pred             hcccCCCCEEEcCCC
Confidence            234555555555553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.69  E-value=1e-07  Score=93.57  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=16.4

Q ss_pred             ceeEEEEcCCCCCCcccccccccccCCCCeEEEecc
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKG   95 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c   95 (261)
                      +|+.|+++++. +..+.+...++++++|+.|+++++
T Consensus       124 ~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          124 ALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             SCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             CCCEEECCCCc-ccccccchhHhhCCCCCEEECCCC
Confidence            45555555432 222222134555666666666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.69  E-value=1.2e-08  Score=99.30  Aligned_cols=49  Identities=18%  Similarity=-0.004  Sum_probs=34.6

Q ss_pred             CCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCC
Q 024866          172 GHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPL  220 (261)
Q Consensus       172 ~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~  220 (261)
                      ..+..+++|+.|++.++.--..++.....+++|+.|++++|+--..+|.
T Consensus       508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~  556 (768)
T 3rgz_A          508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA  556 (768)
T ss_dssp             GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred             hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence            3556678888888888764445555556678888888888876666664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.68  E-value=2e-08  Score=87.36  Aligned_cols=194  Identities=12%  Similarity=0.047  Sum_probs=108.8

Q ss_pred             eEeeeccccccccC-CC--cchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccc
Q 024866            7 FNFHEASEESVLFG-GG--EVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFAD   83 (261)
Q Consensus         7 ~~~~~~~~~~~~~~-~~--~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~   83 (261)
                      |+-++..+..++++ ..  ......+..+++|++|++.......  .+......+.+|++|+++++.-...++  ..+..
T Consensus        72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p--~~~~~  147 (313)
T 1ogq_A           72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG--AIPDFLSQIKTLVTLDFSYNALSGTLP--PSISS  147 (313)
T ss_dssp             GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--ECCGGGGGCTTCCEEECCSSEEESCCC--GGGGG
T ss_pred             HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--cCCHHHhCCCCCCEEeCCCCccCCcCC--hHHhc
Confidence            44566777788874 32  3455678889999999998543220  111122234578899998864221222  46788


Q ss_pred             cCCCCeEEEeccC--------------CcceEecccccccccCCC-CcCCCCCcEEEEecCCCCCCC--CccccCCCCcE
Q 024866           84 LNHLNELYIFKGI--------------ELEELKIDYTEIVRKRRE-PFVFRSLHRVIIGECHKLKDV--TFLVFAPNLKS  146 (261)
Q Consensus        84 l~~L~~L~i~~c~--------------~Le~l~~~~~~~~~~~p~-~~~~~~L~~L~l~~C~~l~~l--~~l~~lp~L~~  146 (261)
                      +++|++|+++++.              .|+.+.+......+..|. ...++ |+.|+++++ ++...  ..+..+++|++
T Consensus       148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N-~l~~~~~~~~~~l~~L~~  225 (313)
T 1ogq_A          148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN-MLEGDASVLFGSDKNTQK  225 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS-EEEECCGGGCCTTSCCSE
T ss_pred             CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC-cccCcCCHHHhcCCCCCE
Confidence            8889988887654              233333322221112222 23333 778887776 34432  23456888888


Q ss_pred             EEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccc-cccCCCccCCccceeeeccCccCCCCCC
Q 024866          147 LRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLK-SIFWKPLPFTHLKKMAVLMCDQLRKPPL  220 (261)
Q Consensus       147 L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~-~i~~~~~~~p~L~~L~i~~C~~L~~lp~  220 (261)
                      |+++++.- ...+.            .+..+++|++|++.++. +. .++.....+++|+.|+++++.--..+|.
T Consensus       226 L~L~~N~l-~~~~~------------~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          226 IHLAKNSL-AFDLG------------KVGLSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EECCSSEE-CCBGG------------GCCCCTTCCEEECCSSC-CEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             EECCCCce-eeecC------------cccccCCCCEEECcCCc-ccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            88888642 21111            12345667777776654 33 3333344566677777766644334554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.67  E-value=1.8e-07  Score=86.44  Aligned_cols=116  Identities=16%  Similarity=0.088  Sum_probs=66.5

Q ss_pred             CcCCCCCcEEEEecCCCCCCCC----ccccCCCCcEEEEeccccccccccccc--ccccCc-------c-cCCcccC-Cc
Q 024866          115 PFVFRSLHRVIIGECHKLKDVT----FLVFAPNLKSLRLFDCGAMEEIISVGK--IAETPE-------M-MGHISPF-EN  179 (261)
Q Consensus       115 ~~~~~~L~~L~l~~C~~l~~l~----~l~~lp~L~~L~i~~C~~L~~i~~~~~--~~~~~~-------~-~~~~~~~-p~  179 (261)
                      .+.+++|+.|+++++ ++..+.    .++.+++|++|+++++.--..+.....  ......       + ......+ ++
T Consensus       344 ~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~  422 (520)
T 2z7x_B          344 CGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR  422 (520)
T ss_dssp             CCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTT
T ss_pred             hccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhccc
Confidence            355667777777666 344321    134567777777776542211221100  000000       0 0011122 57


Q ss_pred             ccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          180 LQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       180 L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      |+.|+++++ +++.++.....+++|+.|++++| +++.+|.........|+.+.
T Consensus       423 L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~  474 (520)
T 2z7x_B          423 IKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIW  474 (520)
T ss_dssp             CCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCcccEEE
Confidence            888888877 47777766668999999999998 68888876444445666644

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.67  E-value=1.3e-07  Score=87.87  Aligned_cols=175  Identities=14%  Similarity=0.047  Sum_probs=111.5

Q ss_pred             eeeEeeeccccccccCCCcch-----hhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccc
Q 024866            5 GWFNFHEASEESVLFGGGEVL-----VQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDAT   79 (261)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~-----l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~   79 (261)
                      ++|+.++..+..++++.....     ...+..+++|+.|++.......+.........+++|+.|+++++ .+..++  .
T Consensus       328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp--~  404 (549)
T 2z81_A          328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMP--D  404 (549)
T ss_dssp             HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCC--S
T ss_pred             HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCC--h
Confidence            455556777777877765433     22356778888888774433333221111223457888888887 445553  4


Q ss_pred             cccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccc
Q 024866           80 AFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEII  159 (261)
Q Consensus        80 ~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~  159 (261)
                      .+..+++|+.|+++++. +..+           |. ..+++|+.|+++++ +++.+  ...+++|++|+++++ .++.+.
T Consensus       405 ~~~~~~~L~~L~Ls~N~-l~~l-----------~~-~~~~~L~~L~Ls~N-~l~~~--~~~l~~L~~L~Ls~N-~l~~ip  467 (549)
T 2z81_A          405 SCQWPEKMRFLNLSSTG-IRVV-----------KT-CIPQTLEVLDVSNN-NLDSF--SLFLPRLQELYISRN-KLKTLP  467 (549)
T ss_dssp             CCCCCTTCCEEECTTSC-CSCC-----------CT-TSCTTCSEEECCSS-CCSCC--CCCCTTCCEEECCSS-CCSSCC
T ss_pred             hhcccccccEEECCCCC-cccc-----------cc-hhcCCceEEECCCC-Chhhh--cccCChhcEEECCCC-ccCcCC
Confidence            56777888888888775 3322           11 22468888888887 56654  356888888888887 444332


Q ss_pred             ccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCc
Q 024866          160 SVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCD  213 (261)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~  213 (261)
                      .             ...+++|+.|++++. +++.+... ...+++|+.|++++++
T Consensus       468 ~-------------~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          468 D-------------ASLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             C-------------GGGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred             C-------------cccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence            1             134778888888886 47766543 3467888888888877

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.67  E-value=4.1e-08  Score=90.04  Aligned_cols=55  Identities=9%  Similarity=-0.062  Sum_probs=29.0

Q ss_pred             eeeccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCC
Q 024866            9 FHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLV   69 (261)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c   69 (261)
                      -++..+..+++......+ .+..+++|+.|++.......+.     ....++|+.|+++++
T Consensus        83 ~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l~-----~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           83 QNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKLD-----VSQNPLLTYLNCARN  137 (457)
T ss_dssp             TCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCCC-----CTTCTTCCEEECTTS
T ss_pred             cCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCeec-----CCCCCcCCEEECCCC
Confidence            345566666666655444 3666777777777643222211     122345666666554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.66  E-value=6.2e-08  Score=88.80  Aligned_cols=177  Identities=12%  Similarity=0.020  Sum_probs=85.7

Q ss_pred             eccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeE
Q 024866           11 EASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNEL   90 (261)
Q Consensus        11 ~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L   90 (261)
                      +..+..++++.....+..+..+++|+.|++.......+.     ...+.+|+.|+++++. +..++    ++.+++|++|
T Consensus        42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-----~~~l~~L~~L~Ls~N~-l~~~~----~~~l~~L~~L  111 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-----LSQNTNLTYLACDSNK-LTNLD----VTPLTKLTYL  111 (457)
T ss_dssp             TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-----CTTCTTCSEEECCSSC-CSCCC----CTTCTTCCEE
T ss_pred             CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc-----cccCCCCCEEECcCCC-Cceee----cCCCCcCCEE
Confidence            344445555544444445555566666655533222210     1123355666666542 33331    4555666666


Q ss_pred             EEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccccccccc-----
Q 024866           91 YIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIA-----  165 (261)
Q Consensus        91 ~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~-----  165 (261)
                      +++++. +..+           + .+.+++|+.|++.++ +++.+. ++.+++|++|++++|..+..+.. ....     
T Consensus       112 ~L~~N~-l~~l-----------~-~~~l~~L~~L~l~~N-~l~~l~-l~~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L  175 (457)
T 3bz5_A          112 NCDTNK-LTKL-----------D-VSQNPLLTYLNCARN-TLTEID-VSHNTQLTELDCHLNKKITKLDV-TPQTQLTTL  175 (457)
T ss_dssp             ECCSSC-CSCC-----------C-CTTCTTCCEEECTTS-CCSCCC-CTTCTTCCEEECTTCSCCCCCCC-TTCTTCCEE
T ss_pred             ECCCCc-CCee-----------c-CCCCCcCCEEECCCC-ccceec-cccCCcCCEEECCCCCccccccc-ccCCcCCEE
Confidence            665542 2211           1 244555555555554 344432 34455555555555543332210 0000     


Q ss_pred             -----ccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866          166 -----ETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP  219 (261)
Q Consensus       166 -----~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp  219 (261)
                           ..+++  .+..+++|+.|++.++. ++.+.  ...+++|+.|+++++ +++.+|
T Consensus       176 ~ls~n~l~~l--~l~~l~~L~~L~l~~N~-l~~~~--l~~l~~L~~L~Ls~N-~l~~ip  228 (457)
T 3bz5_A          176 DCSFNKITEL--DVSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSN-KLTEID  228 (457)
T ss_dssp             ECCSSCCCCC--CCTTCTTCCEEECCSSC-CSCCC--CTTCTTCSEEECCSS-CCSCCC
T ss_pred             ECCCCcccee--ccccCCCCCEEECcCCc-CCeec--cccCCCCCEEECcCC-cccccC
Confidence                 00011  14456777777777653 55542  446788888888876 355565

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.66  E-value=5e-08  Score=84.03  Aligned_cols=171  Identities=19%  Similarity=0.093  Sum_probs=103.6

Q ss_pred             ccccccccCCCcch--hhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCe
Q 024866           12 ASEESVLFGGGEVL--VQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNE   89 (261)
Q Consensus        12 ~~~~~~~~~~~~~~--l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~   89 (261)
                      ..+..++++.....  ...+..+++|+.|.+.......+   ... ....+|+.|++++. .+..++  ..+..+++|+.
T Consensus        32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~-~~l~~L~~L~Ls~N-~l~~l~--~~~~~l~~L~~  104 (290)
T 1p9a_G           32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL---QVD-GTLPVLGTLDLSHN-QLQSLP--LLGQTLPALTV  104 (290)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE---ECC-SCCTTCCEEECCSS-CCSSCC--CCTTTCTTCCE
T ss_pred             CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc---cCC-CCCCcCCEEECCCC-cCCcCc--hhhccCCCCCE
Confidence            34444555443322  23456666666666653221111   111 22346677777664 334442  34566677777


Q ss_pred             EEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEeccccccccccccccccc
Q 024866           90 LYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAET  167 (261)
Q Consensus        90 L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~  167 (261)
                      |+++++. +..+.         ......+++|+.|+++++ +++.++.  +..+++|++|+++++ .++.+..       
T Consensus       105 L~l~~N~-l~~l~---------~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~-------  165 (290)
T 1p9a_G          105 LDVSFNR-LTSLP---------LGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLTELPA-------  165 (290)
T ss_dssp             EECCSSC-CCCCC---------SSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCSCCCT-------
T ss_pred             EECCCCc-CcccC---------HHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC-cCCccCH-------
Confidence            7776653 22221         011357889999999987 6776643  357899999999986 4444332       


Q ss_pred             CcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCc
Q 024866          168 PEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD  213 (261)
Q Consensus       168 ~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~  213 (261)
                          ..+..+++|+.|++.+.. ++.++......++|+.|.+.+.|
T Consensus       166 ----~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          166 ----GLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             ----TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ----HHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence                123458899999998864 88888777778889999887543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.65  E-value=6.3e-08  Score=92.27  Aligned_cols=70  Identities=10%  Similarity=0.061  Sum_probs=49.7

Q ss_pred             hhhhhhcccCCceEEEEEcchHH---------------HHHHhhCcc--cccceeEEEEcCCCCCCcccccccccccCCC
Q 024866           25 LVQELLGLKYLEVLELTLGSYQA---------------LQILLSSNK--LKSCIRSLQLRLVRDTPSIIDATAFADLNHL   87 (261)
Q Consensus        25 ~l~eL~~L~~L~~L~i~~~~~~~---------------l~~l~~~~~--l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L   87 (261)
                      ...++.++++|+.|++.......               ...++....  -+++|+.|++++|.-...++  ..++++++|
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L  275 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP--TFLKALPEM  275 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC--TTTTTCSSC
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh--HHHhcCCCC
Confidence            34568889999999998543222               011444444  56789999999986555554  578899999


Q ss_pred             CeEEEeccC
Q 024866           88 NELYIFKGI   96 (261)
Q Consensus        88 ~~L~i~~c~   96 (261)
                      +.|+++++.
T Consensus       276 ~~L~Ls~n~  284 (636)
T 4eco_A          276 QLINVACNR  284 (636)
T ss_dssp             CEEECTTCT
T ss_pred             CEEECcCCC
Confidence            999999876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.64  E-value=1.3e-07  Score=88.91  Aligned_cols=40  Identities=13%  Similarity=-0.019  Sum_probs=25.4

Q ss_pred             cccCCcccEEeccCCccccccc-CCCccCCccceeeeccCcc
Q 024866          174 ISPFENLQSLDLDDLPHLKSIF-WKPLPFTHLKKMAVLMCDQ  214 (261)
Q Consensus       174 ~~~~p~L~~L~L~~~~~L~~i~-~~~~~~p~L~~L~i~~C~~  214 (261)
                      +..+++|+.|++.++. +.... .....+++|++|.+++|.-
T Consensus       421 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l  461 (606)
T 3t6q_A          421 FQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNHF  461 (606)
T ss_dssp             TTTCTTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred             hhCcccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCCC
Confidence            4556777888877764 33332 2234577888888887753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.63  E-value=1.9e-07  Score=89.13  Aligned_cols=150  Identities=16%  Similarity=0.148  Sum_probs=71.4

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccC-----------------CcceEecccccccccCC-CCcCCCC
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGI-----------------ELEELKIDYTEIVRKRR-EPFVFRS  120 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~-----------------~Le~l~~~~~~~~~~~p-~~~~~~~  120 (261)
                      ++|+.|+++++. +..+.. ..+..+++|+.|++++|.                 .|+.+.+......+..| ....+++
T Consensus       329 ~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  406 (680)
T 1ziw_A          329 KCLEHLNMEDND-IPGIKS-NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH  406 (680)
T ss_dssp             TTCCEEECCSCC-BCCCCT-TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCCCEEECCCCc-cCCCCh-hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCC
Confidence            345555555542 222322 345666777777776542                 33333332221111111 2345667


Q ss_pred             CcEEEEecCCCCC-CCC--ccccCCCCcEEEEecccccccccccccc---------------cccCcccCCcccCCcccE
Q 024866          121 LHRVIIGECHKLK-DVT--FLVFAPNLKSLRLFDCGAMEEIISVGKI---------------AETPEMMGHISPFENLQS  182 (261)
Q Consensus       121 L~~L~l~~C~~l~-~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~---------------~~~~~~~~~~~~~p~L~~  182 (261)
                      |+.|+++++. +. .++  ....+++|++|++++|. +..+......               ......+..+..+++|+.
T Consensus       407 L~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~  484 (680)
T 1ziw_A          407 LEVLDLGLNE-IGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI  484 (680)
T ss_dssp             CCEEECCSSC-CEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred             CCEEeCCCCc-CccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence            7777777663 32 221  23456777777777664 2211110000               000012234455666666


Q ss_pred             EeccCCcccccccCC-CccCCccceeeeccCc
Q 024866          183 LDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCD  213 (261)
Q Consensus       183 L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~  213 (261)
                      |++.++. ++.+... ...+++|+.|+++++.
T Consensus       485 L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~  515 (680)
T 1ziw_A          485 LDLSNNN-IANINDDMLEGLEKLEILDLQHNN  515 (680)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECCCCC-CCcCChhhhccccccCEEeCCCCC
Confidence            6666643 5555433 2346677777776663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.63  E-value=1.4e-07  Score=93.01  Aligned_cols=34  Identities=15%  Similarity=0.189  Sum_probs=18.0

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCC-CCeEEEecc
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNH-LNELYIFKG   95 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~-L~~L~i~~c   95 (261)
                      ++|+.|+++++. +..++  ..+..+++ |+.|+++++
T Consensus       595 ~~L~~L~Ls~N~-l~~lp--~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          595 VKLTDLKLDYNQ-IEEIP--EDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             SEESEEECCSSC-CSCCC--TTSCEECTTCCEEECCSS
T ss_pred             CcceEEECcCCc-cccch--HHHhhccccCCEEECcCC
Confidence            345566665543 22332  34556666 666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.63  E-value=4.2e-08  Score=85.14  Aligned_cols=100  Identities=14%  Similarity=0.095  Sum_probs=55.2

Q ss_pred             cCCCCCcEEEEecCCCCCCCCc-----cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcc
Q 024866          116 FVFRSLHRVIIGECHKLKDVTF-----LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPH  190 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~~-----l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~  190 (261)
                      +.+++|+.|+++++ +++.+..     ...+++|++|+++++. +...+..          .....+++|+.|++++.. 
T Consensus       198 ~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~----------~~~~~l~~L~~L~Ls~N~-  264 (312)
T 1wwl_A          198 LKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGA----------PSCDWPSQLNSLNLSFTG-  264 (312)
T ss_dssp             TSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCC----------SCCCCCTTCCEEECTTSC-
T ss_pred             ccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccch----------hhhhhcCCCCEEECCCCc-
Confidence            34556666666655 3442211     1245666666666542 2222110          122346788888888764 


Q ss_pred             cccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          191 LKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       191 L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      ++.++....  ++|++|+++++ +++.+|.  ......|+.++
T Consensus       265 l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~--~~~l~~L~~L~  302 (312)
T 1wwl_A          265 LKQVPKGLP--AKLSVLDLSYN-RLDRNPS--PDELPQVGNLS  302 (312)
T ss_dssp             CSSCCSSCC--SEEEEEECCSS-CCCSCCC--TTTSCEEEEEE
T ss_pred             cChhhhhcc--CCceEEECCCC-CCCCChh--HhhCCCCCEEe
Confidence            666654332  78888888887 5666665  22345666654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.62  E-value=4.5e-08  Score=85.08  Aligned_cols=199  Identities=14%  Similarity=0.019  Sum_probs=120.0

Q ss_pred             cccccCCCc----chhhhhhcccCCceEEEEE-cchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCe
Q 024866           15 ESVLFGGGE----VLVQELLGLKYLEVLELTL-GSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNE   89 (261)
Q Consensus        15 ~~~~~~~~~----~~l~eL~~L~~L~~L~i~~-~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~   89 (261)
                      ..++++...    .....+..+++|+.|++.. .....  .+......+++|++|+++++.-...++  ..+..+++|++
T Consensus        54 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~l~~~~p--~~~~~l~~L~~  129 (313)
T 1ogq_A           54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG--PIPPAIAKLTQLHYLYITHTNVSGAIP--DFLSQIKTLVT  129 (313)
T ss_dssp             EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES--CCCGGGGGCTTCSEEEEEEECCEEECC--GGGGGCTTCCE
T ss_pred             EEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc--cCChhHhcCCCCCEEECcCCeeCCcCC--HHHhCCCCCCE
Confidence            445555443    3457888999999999984 22110  112222335689999999874322332  56889999999


Q ss_pred             EEEecc-------------CCcceEecccccccccCC-CCcCCC-CCcEEEEecCCCCC-CC-CccccCCCCcEEEEecc
Q 024866           90 LYIFKG-------------IELEELKIDYTEIVRKRR-EPFVFR-SLHRVIIGECHKLK-DV-TFLVFAPNLKSLRLFDC  152 (261)
Q Consensus        90 L~i~~c-------------~~Le~l~~~~~~~~~~~p-~~~~~~-~L~~L~l~~C~~l~-~l-~~l~~lp~L~~L~i~~C  152 (261)
                      |+++++             ++|+.+.+......+..| ..+.++ +|+.|+++++ ++. .+ ..+..++ |++|+++++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECCGGGGGCC-CSEEECCSS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC-eeeccCChHHhCCc-ccEEECcCC
Confidence            998765             334444443332221222 234555 7888888776 333 22 1234455 999999987


Q ss_pred             cccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEE
Q 024866          153 GAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVI  232 (261)
Q Consensus       153 ~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  232 (261)
                      . ++..+           +..+..+++|+.|++.+.. +.........+++|++|+++++.--..+|.... ....|+.+
T Consensus       208 ~-l~~~~-----------~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L  273 (313)
T 1ogq_A          208 M-LEGDA-----------SVLFGSDKNTQKIHLAKNS-LAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT-QLKFLHSL  273 (313)
T ss_dssp             E-EEECC-----------GGGCCTTSCCSEEECCSSE-ECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG-GCTTCCEE
T ss_pred             c-ccCcC-----------CHHHhcCCCCCEEECCCCc-eeeecCcccccCCCCEEECcCCcccCcCChHHh-cCcCCCEE
Confidence            4 33222           1245678999999999875 443333345679999999999865445664322 23455554


Q ss_pred             E
Q 024866          233 R  233 (261)
Q Consensus       233 ~  233 (261)
                      .
T Consensus       274 ~  274 (313)
T 1ogq_A          274 N  274 (313)
T ss_dssp             E
T ss_pred             E
Confidence            3

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.62  E-value=5.9e-07  Score=79.10  Aligned_cols=55  Identities=16%  Similarity=0.094  Sum_probs=38.8

Q ss_pred             cccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          174 ISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       174 ~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      +..+++|+.|++++. +|+.++.  ..+.+|+.|.+.+|.+++.+|.-..  -.+|+...
T Consensus       198 f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~l~~lP~l~~--l~~L~~l~  252 (350)
T 4ay9_X          198 FHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYNLKKLPTLEK--LVALMEAS  252 (350)
T ss_dssp             TTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTTCCCCCCTTT--CCSCCEEE
T ss_pred             hccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCCcCcCCCchh--CcChhhCc
Confidence            456677888888775 4777763  3477888888889999999885332  35666655

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.62  E-value=4.4e-07  Score=79.00  Aligned_cols=58  Identities=17%  Similarity=0.133  Sum_probs=41.4

Q ss_pred             CcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          173 HISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       173 ~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      .+..+++|+.|++.+.. ++.+.. ....+++|+.|++++| +++.+|..... ...|+.+.
T Consensus       211 ~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~-l~~L~~L~  269 (330)
T 1xku_A          211 SLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLAD-HKYIQVVY  269 (330)
T ss_dssp             GGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTT-CSSCCEEE
T ss_pred             HhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cCccCChhhcc-CCCcCEEE
Confidence            45678899999998865 666654 3446899999999999 67788765332 35566654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.62  E-value=1.2e-08  Score=95.52  Aligned_cols=42  Identities=14%  Similarity=0.023  Sum_probs=30.1

Q ss_pred             ccCCcccEEeccCCcccccc--cCCCccCCccceeeeccCccCCCC
Q 024866          175 SPFENLQSLDLDDLPHLKSI--FWKPLPFTHLKKMAVLMCDQLRKP  218 (261)
Q Consensus       175 ~~~p~L~~L~L~~~~~L~~i--~~~~~~~p~L~~L~i~~C~~L~~l  218 (261)
                      ..+++|+.|++++|+ +..-  ......+++|++|++++|. ++.-
T Consensus       485 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~  528 (592)
T 3ogk_B          485 RGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT  528 (592)
T ss_dssp             TCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred             hcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence            457889999999998 5432  2122357999999999998 5543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.61  E-value=2.9e-07  Score=86.12  Aligned_cols=37  Identities=19%  Similarity=0.225  Sum_probs=21.7

Q ss_pred             ccceeEEEEcCCCCCCcccccccccccCCCCeEEEecc
Q 024866           58 KSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKG   95 (261)
Q Consensus        58 ~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c   95 (261)
                      +.+|++|+++++. +..++.+..++.+++|++|+++++
T Consensus       120 l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n  156 (562)
T 3a79_B          120 MASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA  156 (562)
T ss_dssp             CTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS
T ss_pred             cccCCEEECCCCC-ccccCchHhhcccCcccEEecCCC
Confidence            3456667766653 344433245667777777777654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.58  E-value=7.7e-08  Score=89.57  Aligned_cols=60  Identities=10%  Similarity=0.067  Sum_probs=39.5

Q ss_pred             CcccCCcccEEeccCCccc-ccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          173 HISPFENLQSLDLDDLPHL-KSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       173 ~~~~~p~L~~L~L~~~~~L-~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      .+..+++|+.|++.++.-- ..++.....+++|+.|++++|. ++.++........+|+.+.
T Consensus       440 ~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~  500 (570)
T 2z63_A          440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLN  500 (570)
T ss_dssp             TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEE
T ss_pred             hhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEe
Confidence            4556889999999888633 2455455678999999999984 4444333333346666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.56  E-value=6.1e-07  Score=85.39  Aligned_cols=51  Identities=18%  Similarity=0.100  Sum_probs=26.3

Q ss_pred             CCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          177 FENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       177 ~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      +++|+.|+++++ +++.++.   .+++|+.|++++| +++.+|.. .....+|+.+.
T Consensus       240 l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~-l~~l~~L~~L~  290 (622)
T 3g06_A          240 PSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPES-LIHLSSETTVN  290 (622)
T ss_dssp             CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGG-GGGSCTTCEEE
T ss_pred             CCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHH-HhhccccCEEE
Confidence            345555555554 3444432   4566666666666 45566543 22235555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.56  E-value=1.2e-06  Score=80.86  Aligned_cols=34  Identities=15%  Similarity=-0.029  Sum_probs=19.2

Q ss_pred             eeccccccccCCCcch---hhhhhcccCCceEEEEEc
Q 024866           10 HEASEESVLFGGGEVL---VQELLGLKYLEVLELTLG   43 (261)
Q Consensus        10 ~~~~~~~~~~~~~~~~---l~eL~~L~~L~~L~i~~~   43 (261)
                      .+..+..++++.....   ...+..+++|+.|++...
T Consensus        89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n  125 (520)
T 2z7x_B           89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT  125 (520)
T ss_dssp             CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred             cCCccEEeccCCccccccchhhhccCCcceEEEecCc
Confidence            3445555555554332   256666777777777653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.56  E-value=6.2e-07  Score=85.40  Aligned_cols=48  Identities=13%  Similarity=0.014  Sum_probs=27.6

Q ss_pred             CcccCCcccEEeccCCc------ccccccCCCccCCccceeeeccCccCCCCCCC
Q 024866          173 HISPFENLQSLDLDDLP------HLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLD  221 (261)
Q Consensus       173 ~~~~~p~L~~L~L~~~~------~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~  221 (261)
                      .+..+++|+.|++++.+      -...++.....+++|+.|++++|.- +.+|..
T Consensus       531 ~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~  584 (636)
T 4eco_A          531 QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK  584 (636)
T ss_dssp             GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence            44556777777775432      2233343444567777777777654 666654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.55  E-value=7.8e-08  Score=88.81  Aligned_cols=187  Identities=11%  Similarity=-0.012  Sum_probs=95.8

Q ss_pred             cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEecc--------CCcceEecc
Q 024866           33 KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKG--------IELEELKID  104 (261)
Q Consensus        33 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c--------~~Le~l~~~  104 (261)
                      ++|+.|+++......+.  ......+++|+.|+|+++. +..+   ..++.+++|+.|+++++        +.|+.+.+.
T Consensus        34 ~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~~---~~l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~  107 (487)
T 3oja_A           34 WNVKELDLSGNPLSQIS--AADLAPFTKLELLNLSSNV-LYET---LDLESLSTLRTLDLNNNYVQELLVGPSIETLHAA  107 (487)
T ss_dssp             GGCCEEECCSSCCCCCC--GGGGTTCTTCCEEECTTSC-CEEE---EECTTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred             CCccEEEeeCCcCCCCC--HHHHhCCCCCCEEEeeCCC-CCCC---cccccCCCCCEEEecCCcCCCCCCCCCcCEEECc
Confidence            46777777643322211  1112223467777777653 2322   12566677777777655        233333332


Q ss_pred             cccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccc---ccc----------Cc
Q 024866          105 YTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKI---AET----------PE  169 (261)
Q Consensus       105 ~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~---~~~----------~~  169 (261)
                      .....+. +. ..+++|+.|++.++ ++..+.  .++.+++|++|+++++. +..++.....   ...          ++
T Consensus       108 ~N~l~~~-~~-~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~  183 (487)
T 3oja_A          108 NNNISRV-SC-SRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYD  183 (487)
T ss_dssp             SSCCCCE-EE-CCCSSCEEEECCSS-CCCSGGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred             CCcCCCC-Cc-cccCCCCEEECCCC-CCCCCCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCcccc
Confidence            2211111 11 34566666666665 344432  23446666666666642 2222111100   000          01


Q ss_pred             ccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          170 MMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       170 ~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      + .....+++|+.|++++.. ++.++.....+++|+.|+++++. +..+|.... ....|+.+.
T Consensus       184 ~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~-~l~~L~~L~  243 (487)
T 3oja_A          184 V-KGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKALR-FSQNLEHFD  243 (487)
T ss_dssp             E-ECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTTCC-CCTTCCEEE
T ss_pred             c-cccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc-Ccccchhhc-cCCCCCEEE
Confidence            1 122347888888888864 77776656678899999998863 556665422 235565544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.54  E-value=6.2e-08  Score=82.27  Aligned_cols=179  Identities=20%  Similarity=0.099  Sum_probs=110.4

Q ss_pred             eeEeeeccccccccCCCcchhh--hhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccc
Q 024866            6 WFNFHEASEESVLFGGGEVLVQ--ELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFAD   83 (261)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~l~--eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~   83 (261)
                      .|..++..+..++++.....+.  .+..+++|+.|++.......+.  ......+.+|+.|++.++. +..+.. ..++.
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~  122 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA--LGAFSGLSSLQKLVAVETN-LASLEN-FPIGH  122 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC--TTTTTTCTTCCEEECTTSC-CCCSTT-CCCTT
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC--hhhhcCCccccEEECCCCC-ccccCc-hhccc
Confidence            3445566677777666543333  3666777777777532211110  0112234589999999864 344432 35788


Q ss_pred             cCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccccCCCCc----EEEEeccccccc
Q 024866           84 LNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLVFAPNLK----SLRLFDCGAMEE  157 (261)
Q Consensus        84 l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~----~L~i~~C~~L~~  157 (261)
                      +++|+.|+++++. +..+.+        +.....+++|+.|+++++ +++.+.  .+..+++|+    +|+++++. +..
T Consensus       123 l~~L~~L~l~~n~-l~~~~l--------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~  191 (276)
T 2z62_A          123 LKTLKELNVAHNL-IQSFKL--------PEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNF  191 (276)
T ss_dssp             CTTCCEEECCSSC-CCCCCC--------CGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEECCSSC-CCE
T ss_pred             CCCCCEEECcCCc-cceecC--------chhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeecCCCc-ccc
Confidence            9999999999875 322211        112356889999999998 566553  233344555    78887753 333


Q ss_pred             ccccccccccCcccCCcccCCcccEEeccCCcccccccCCC-ccCCccceeeeccC
Q 024866          158 IISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKP-LPFTHLKKMAVLMC  212 (261)
Q Consensus       158 i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C  212 (261)
                      +..            ......+|+.|++.+.. ++.++... ..+++|+.|++++.
T Consensus       192 ~~~------------~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          192 IQP------------GAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             ECT------------TSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred             cCc------------cccCCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence            322            22334589999999876 88776543 45899999999854

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.53  E-value=1.8e-06  Score=79.03  Aligned_cols=127  Identities=15%  Similarity=0.157  Sum_probs=71.5

Q ss_pred             ccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEE
Q 024866           12 ASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELY   91 (261)
Q Consensus        12 ~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~   91 (261)
                      ..+..++++.....+.++..+++|+.|++.......      .+....+|+.|+++++ .+..+   +.++.+++|+.|+
T Consensus       132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~------lp~~~~~L~~L~L~~n-~l~~l---~~~~~l~~L~~L~  201 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK------LPDLPPSLEFIAAGNN-QLEEL---PELQNLPFLTAIY  201 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC------CCCCCTTCCEEECCSS-CCSSC---CCCTTCTTCCEEE
T ss_pred             CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcc------cCCCcccccEEECcCC-cCCcC---ccccCCCCCCEEE
Confidence            455556655554445566777777777776432211      1122347888888876 34444   3578888888888


Q ss_pred             EeccC---------CcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecc
Q 024866           92 IFKGI---------ELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDC  152 (261)
Q Consensus        92 i~~c~---------~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C  152 (261)
                      ++++.         .|+.+.+..... ..+|..+.+++|+.|+++++ +++.++  ..+++|++|+++++
T Consensus       202 l~~N~l~~l~~~~~~L~~L~l~~n~l-~~lp~~~~l~~L~~L~l~~N-~l~~l~--~~~~~L~~L~l~~N  267 (454)
T 1jl5_A          202 ADNNSLKKLPDLPLSLESIVAGNNIL-EELPELQNLPFLTTIYADNN-LLKTLP--DLPPSLEALNVRDN  267 (454)
T ss_dssp             CCSSCCSSCCCCCTTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSS-CCSSCC--SCCTTCCEEECCSS
T ss_pred             CCCCcCCcCCCCcCcccEEECcCCcC-CcccccCCCCCCCEEECCCC-cCCccc--ccccccCEEECCCC
Confidence            87763         344554433322 13344556677777777765 344432  12344555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.53  E-value=2e-07  Score=80.65  Aligned_cols=98  Identities=13%  Similarity=0.089  Sum_probs=52.5

Q ss_pred             CCCCCcEEEEecCCCCCCCCc-----cccCCCCcEEEEecccccccccccccccccCcccCCccc---CCcccEEeccCC
Q 024866          117 VFRSLHRVIIGECHKLKDVTF-----LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISP---FENLQSLDLDDL  188 (261)
Q Consensus       117 ~~~~L~~L~l~~C~~l~~l~~-----l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~---~p~L~~L~L~~~  188 (261)
                      .+++|+.|++++| +++.++.     .+.+++|++|+++++. +..+.           +..+..   +++|++|+++++
T Consensus       195 ~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~-----------p~~~~~~~~~~~L~~L~Ls~N  261 (310)
T 4glp_A          195 KFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATV-----------NPSAPRCMWSSALNSLNLSFA  261 (310)
T ss_dssp             SSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCC-----------CSCCSSCCCCTTCCCEECCSS
T ss_pred             cCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccc-----------hhhHHhccCcCcCCEEECCCC
Confidence            4556666666655 3443321     1345666666666543 22221           111222   368888888775


Q ss_pred             cccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          189 PHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       189 ~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      . ++.++...  +++|+.|+++++ +++.+|...  ....|+.++
T Consensus       262 ~-l~~lp~~~--~~~L~~L~Ls~N-~l~~~~~~~--~l~~L~~L~  300 (310)
T 4glp_A          262 G-LEQVPKGL--PAKLRVLDLSSN-RLNRAPQPD--ELPEVDNLT  300 (310)
T ss_dssp             C-CCSCCSCC--CSCCSCEECCSC-CCCSCCCTT--SCCCCSCEE
T ss_pred             C-CCchhhhh--cCCCCEEECCCC-cCCCCchhh--hCCCccEEE
Confidence            4 66665432  378888888877 455555421  234555543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.52  E-value=3.4e-07  Score=87.15  Aligned_cols=38  Identities=11%  Similarity=-0.067  Sum_probs=31.8

Q ss_pred             cCCcccEEeccCCcccccccCCCccCCccceeeeccCcc
Q 024866          176 PFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQ  214 (261)
Q Consensus       176 ~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~  214 (261)
                      .+++|+.|++.++ +++.++.....+++|+.|.+++++-
T Consensus       259 ~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          259 LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCCC
Confidence            5688999999997 5888876667789999999998853

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.51  E-value=5.1e-07  Score=79.54  Aligned_cols=193  Identities=15%  Similarity=0.088  Sum_probs=96.1

Q ss_pred             eccccccccCCCcchhh--hhhcccCCceEEEEEcchH-HHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCC
Q 024866           11 EASEESVLFGGGEVLVQ--ELLGLKYLEVLELTLGSYQ-ALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHL   87 (261)
Q Consensus        11 ~~~~~~~~~~~~~~~l~--eL~~L~~L~~L~i~~~~~~-~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L   87 (261)
                      +..+..+++......+.  .+.++++|+.|++..-... .++.  .....+.+++.+.+.++.++..++. ..+..+++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~--~~f~~L~~l~~~l~~~~N~l~~l~~-~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA--DVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECT--TSBCSCTTCCEEEEEEETTCCEECT-TSBCCCTTC
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccCh--hHhhcchhhhhhhcccCCcccccCc-hhhhhcccc
Confidence            34566777777666554  3788899999998843211 0110  1111223455555555667777654 556777888


Q ss_pred             CeEEEeccCCcceE--------------ecccccccccCCC---CcCCCCCcEEEEecCCCCCCCCc-cccCCCCcEEEE
Q 024866           88 NELYIFKGIELEEL--------------KIDYTEIVRKRRE---PFVFRSLHRVIIGECHKLKDVTF-LVFAPNLKSLRL  149 (261)
Q Consensus        88 ~~L~i~~c~~Le~l--------------~~~~~~~~~~~p~---~~~~~~L~~L~l~~C~~l~~l~~-l~~lp~L~~L~i  149 (261)
                      +.|+++++.- ..+              .+.....-..++.   .+....++.|++++. +++.++. ....++|++|.+
T Consensus       107 ~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l  184 (350)
T 4ay9_X          107 QYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNL  184 (350)
T ss_dssp             CEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEEC
T ss_pred             cccccccccc-ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhccccchhHHhh
Confidence            8888776531 111              0000000000010   011122333444332 2332211 011233444444


Q ss_pred             ecccccccccccc--cccc----------cCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeecc
Q 024866          150 FDCGAMEEIISVG--KIAE----------TPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLM  211 (261)
Q Consensus       150 ~~C~~L~~i~~~~--~~~~----------~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~  211 (261)
                      .+++.++.+....  ....          .+.++  ...|.+|+.|++.++.+++.++. ...+++|+.+.+.+
T Consensus       185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp--~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          185 SDNNNLEELPNDVFHGASGPVILDISRTRIHSLP--SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY  255 (350)
T ss_dssp             TTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC--SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred             ccCCcccCCCHHHhccCcccchhhcCCCCcCccC--hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence            4444443332210  0000          00111  13478899999999999999984 55789999998854

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.48  E-value=4.1e-07  Score=86.73  Aligned_cols=98  Identities=15%  Similarity=0.103  Sum_probs=48.4

Q ss_pred             CCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccc--ccc----------------Cccc----CCcc
Q 024866          120 SLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKI--AET----------------PEMM----GHIS  175 (261)
Q Consensus       120 ~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~--~~~----------------~~~~----~~~~  175 (261)
                      +|+.|+++++ ++..+.  .++.+++|++|+++++. +..+......  ...                ..++    ..+.
T Consensus       249 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~  326 (680)
T 1ziw_A          249 NLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ  326 (680)
T ss_dssp             CCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSCC-BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTT
T ss_pred             CCCEEECCCC-CcCccCcccccCcccccEeeCCCCc-cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcc
Confidence            4777777776 344432  34567777777777753 2222210000  000                0001    1334


Q ss_pred             cCCcccEEeccCCcccccccCC-CccCCccceeeeccCc-cCCCCCC
Q 024866          176 PFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCD-QLRKPPL  220 (261)
Q Consensus       176 ~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~-~L~~lp~  220 (261)
                      .+++|++|++.++. +..+... ...+++|++|++++|. .++.++.
T Consensus       327 ~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~  372 (680)
T 1ziw_A          327 WLKCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN  372 (680)
T ss_dssp             TCTTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTCBSCCCEECT
T ss_pred             cCCCCCEEECCCCc-cCCCChhHhccccCCcEEECCCCchhhhhcch
Confidence            45666666666543 3333322 3346777777777764 2444443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.48  E-value=1.7e-06  Score=84.96  Aligned_cols=64  Identities=20%  Similarity=0.141  Sum_probs=32.3

Q ss_pred             eeeEeeeccccccccCCCcc--hhhh--hhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCC
Q 024866            5 GWFNFHEASEESVLFGGGEV--LVQE--LLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLV   69 (261)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~--~l~e--L~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c   69 (261)
                      +.|+.++..++.+++.....  .+..  +.++++|+.|++.......+. .......+++|+.|+++++
T Consensus        91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESS
T ss_pred             hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCC
Confidence            34556666677777666433  2333  666677777776643221110 0001122345666666654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.47  E-value=1.6e-06  Score=73.38  Aligned_cols=122  Identities=16%  Similarity=0.170  Sum_probs=91.9

Q ss_pred             ccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc
Q 024866           58 KSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF  137 (261)
Q Consensus        58 ~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~  137 (261)
                      +.+|+.|+++++ ++..+   +.+..+++|+.|+++++. +..+           +....+++|+.|+++++ ++++++.
T Consensus        40 l~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~L~~N~-i~~~-----------~~l~~l~~L~~L~L~~N-~l~~l~~  102 (263)
T 1xeu_A           40 LSGVQNFNGDNS-NIQSL---AGMQFFTNLKELHLSHNQ-ISDL-----------SPLKDLTKLEELSVNRN-RLKNLNG  102 (263)
T ss_dssp             HTTCSEEECTTS-CCCCC---TTGGGCTTCCEEECCSSC-CCCC-----------GGGTTCSSCCEEECCSS-CCSCCTT
T ss_pred             cCcCcEEECcCC-Ccccc---hHHhhCCCCCEEECCCCc-cCCC-----------hhhccCCCCCEEECCCC-ccCCcCc
Confidence            357899999987 55666   467889999999999875 3322           11467899999999998 6777765


Q ss_pred             cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCc
Q 024866          138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD  213 (261)
Q Consensus       138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~  213 (261)
                      ... ++|++|+++++ .++.+.             .+..+++|+.|++.+.. ++.+. ....+++|+.|.++++.
T Consensus       103 ~~~-~~L~~L~L~~N-~l~~~~-------------~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~  161 (263)
T 1xeu_A          103 IPS-ACLSRLFLDNN-ELRDTD-------------SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNE  161 (263)
T ss_dssp             CCC-SSCCEEECCSS-CCSBSG-------------GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSC
T ss_pred             ccc-CcccEEEccCC-ccCCCh-------------hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCc
Confidence            555 99999999997 344331             34568999999998864 66664 34568999999998873

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.47  E-value=9.8e-08  Score=82.76  Aligned_cols=182  Identities=17%  Similarity=0.115  Sum_probs=108.2

Q ss_pred             eeccccccccCCCcc--hhhhh--hcccCCceEEEEEcchHH----HHHHhhCcccccceeEEEEcCCCCCCcccccccc
Q 024866           10 HEASEESVLFGGGEV--LVQEL--LGLKYLEVLELTLGSYQA----LQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAF   81 (261)
Q Consensus        10 ~~~~~~~~~~~~~~~--~l~eL--~~L~~L~~L~i~~~~~~~----l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l   81 (261)
                      ++..+..+++.....  ....+  ..+++|+.|++..-....    +..+...  ..++|+.|+++++. +..++. ..+
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~--~~~~L~~L~L~~N~-l~~~~~-~~~  169 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW--LKPGLKVLSIAQAH-SLNFSC-EQV  169 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTT--CCTTCCEEEEESCS-CCCCCT-TTC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHh--hcCCCcEEEeeCCC-CccchH-HHh
Confidence            345566666665432  22333  677888888887433221    2222111  12567888887753 344432 456


Q ss_pred             cccCCCCeEEEeccCC-----------------cceEecccccccc--cCCC--CcCCCCCcEEEEecCCCCCCCC---c
Q 024866           82 ADLNHLNELYIFKGIE-----------------LEELKIDYTEIVR--KRRE--PFVFRSLHRVIIGECHKLKDVT---F  137 (261)
Q Consensus        82 ~~l~~L~~L~i~~c~~-----------------Le~l~~~~~~~~~--~~p~--~~~~~~L~~L~l~~C~~l~~l~---~  137 (261)
                      +.+++|+.|+++++.-                 |+.+.+.......  ..+.  ...+++|+.|+++++ ++....   .
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~  248 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPS  248 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSC
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhh
Confidence            7777777777776542                 2223222211100  0010  135689999999988 566632   3


Q ss_pred             cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCc
Q 024866          138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD  213 (261)
Q Consensus       138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~  213 (261)
                      ...+++|++|+++++. ++.+..            .+.  ++|+.|++++. +++.++. ...+++|+.|.+++.+
T Consensus       249 ~~~l~~L~~L~Ls~N~-l~~ip~------------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          249 CDWPSQLNSLNLSFTG-LKQVPK------------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             CCCCTTCCEEECTTSC-CSSCCS------------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTCT
T ss_pred             hhhcCCCCEEECCCCc-cChhhh------------hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCCC
Confidence            3558999999999974 443322            222  89999999986 4777754 6678999999888753

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.47  E-value=1.3e-06  Score=72.39  Aligned_cols=128  Identities=21%  Similarity=0.156  Sum_probs=83.1

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc-
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF-  137 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~-  137 (261)
                      .+|+.|+++++ .+..+.. ..+..+++|+.|+++++. +..+..         .....+++|+.|+++++ +++.+.. 
T Consensus        40 ~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~L~~N~-l~~i~~---------~~~~~l~~L~~L~Ls~N-~l~~l~~~  106 (229)
T 3e6j_A           40 TNAQILYLHDN-QITKLEP-GVFDSLINLKELYLGSNQ-LGALPV---------GVFDSLTQLTVLDLGTN-QLTVLPSA  106 (229)
T ss_dssp             TTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred             CCCCEEEcCCC-ccCccCH-HHhhCccCCcEEECCCCC-CCCcCh---------hhcccCCCcCEEECCCC-cCCccChh
Confidence            57888888875 3444433 456778888888888765 332211         11246788888888877 5766643 


Q ss_pred             -cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCc
Q 024866          138 -LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCD  213 (261)
Q Consensus       138 -l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~  213 (261)
                       +..+++|++|+++++ .+..+.            ..+..+++|+.|++.+. +++.+... ...+++|+.|.+.+.+
T Consensus       107 ~~~~l~~L~~L~Ls~N-~l~~lp------------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          107 VFDRLVHLKELFMCCN-KLTELP------------RGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TTTTCTTCCEEECCSS-CCCSCC------------TTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             HhCcchhhCeEeccCC-cccccC------------cccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence             456888888888875 343322            24456788888888875 46666543 3357788888776653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.46  E-value=1.1e-07  Score=75.94  Aligned_cols=89  Identities=19%  Similarity=0.121  Sum_probs=38.9

Q ss_pred             ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCC-cCCCCCcEEEEecCCCCCCC--C
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREP-FVFRSLHRVIIGECHKLKDV--T  136 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~-~~~~~L~~L~l~~C~~l~~l--~  136 (261)
                      .|+.|++++|. ++..++ ..+..+++|++|.+++|..+..-.+..-      ... ...++|++|+|++|+++++-  .
T Consensus        62 ~L~~LDLs~~~-Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~L------~~~~~~~~~L~~L~Ls~C~~ITD~Gl~  133 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERL------SQLENLQKSMLEMEIISCGNVTDKGII  133 (176)
T ss_dssp             CEEEEEEESCC-CCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHHH------HTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred             eEeEEeCcCCC-ccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHHH------HhcccccCCCCEEEcCCCCcCCHHHHH
Confidence            35555555554 444433 3445555555555555554322100000      000 00124555555555555442  1


Q ss_pred             ccccCCCCcEEEEecccccc
Q 024866          137 FLVFAPNLKSLRLFDCGAME  156 (261)
Q Consensus       137 ~l~~lp~L~~L~i~~C~~L~  156 (261)
                      .+..+++|++|+|++|+.++
T Consensus       134 ~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          134 ALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HGGGCTTCCEEEEESCTTCC
T ss_pred             HHhcCCCCCEEECCCCCCCC
Confidence            22345555555555555444

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.46  E-value=2e-06  Score=69.74  Aligned_cols=127  Identities=20%  Similarity=0.162  Sum_probs=64.8

Q ss_pred             ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--  137 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--  137 (261)
                      .++.|+++++ ++..++. ..++.+++|++|+++++. +..+..         .....+++|++|++.++ +++.+..  
T Consensus        29 ~l~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~---------~~~~~l~~L~~L~Ls~n-~l~~~~~~~   95 (208)
T 2o6s_A           29 QTTYLDLETN-SLKSLPN-GVFDELTSLTQLYLGGNK-LQSLPN---------GVFNKLTSLTYLNLSTN-QLQSLPNGV   95 (208)
T ss_dssp             TCSEEECCSS-CCCCCCT-TTTTTCTTCSEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred             CCcEEEcCCC-ccCcCCh-hhhcccccCcEEECCCCc-cCccCh---------hhcCCCCCcCEEECCCC-cCCccCHhH
Confidence            5666666664 3334432 335566666666666542 322210         00134566666666665 4554432  


Q ss_pred             cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccC
Q 024866          138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMC  212 (261)
Q Consensus       138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C  212 (261)
                      +..+++|++|+++++ .+..+..           ..+..+++|+.|++.+. +++.+... ...+++|+.|++.++
T Consensus        96 ~~~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           96 FDKLTQLKELALNTN-QLQSLPD-----------GVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             TTTCTTCCEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             hcCccCCCEEEcCCC-cCcccCH-----------hHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCC
Confidence            345666666666664 2332221           12334566666666664 35554433 234566666666664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.45  E-value=1.5e-06  Score=72.83  Aligned_cols=153  Identities=21%  Similarity=0.222  Sum_probs=102.5

Q ss_pred             cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccC
Q 024866           33 KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKR  112 (261)
Q Consensus        33 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~  112 (261)
                      .+|+.|++.......+.  ......+.+|+.|+++++ .+..+.. ..+..+++|+.|+++++. +..+..         
T Consensus        35 ~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~---------  100 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYN-QLQTLSA-GVFDDLTELGTLGLANNQ-LASLPL---------  100 (251)
T ss_dssp             TTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCEEECTTSC-CCCCCT---------
T ss_pred             CCCCEEEccCCCcCccC--HhHhcCcccCCEEECCCC-cCCccCH-hHhccCCcCCEEECCCCc-ccccCh---------
Confidence            46777777643322111  111223468999999986 4555543 557889999999998865 332211         


Q ss_pred             CCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcc
Q 024866          113 REPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPH  190 (261)
Q Consensus       113 p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~  190 (261)
                      .....+++|+.|+++++ +++.++.  +..+++|++|+++++ .++.+..           ..+..+++|+.|++.+. +
T Consensus       101 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N-~  166 (251)
T 3m19_A          101 GVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA-----------GAFDKLTNLQTLSLSTN-Q  166 (251)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSS-C
T ss_pred             hHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cCCccCH-----------HHcCcCcCCCEEECCCC-c
Confidence            11256889999999987 6777643  467899999999987 4544332           13456889999999886 4


Q ss_pred             cccccCC-CccCCccceeeeccCc
Q 024866          191 LKSIFWK-PLPFTHLKKMAVLMCD  213 (261)
Q Consensus       191 L~~i~~~-~~~~p~L~~L~i~~C~  213 (261)
                      ++.+... ...+++|+.|.+.+++
T Consensus       167 l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          167 LQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CCccCHHHHhCCCCCCEEEeeCCc
Confidence            7776653 3457899999998765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.44  E-value=2.6e-07  Score=71.02  Aligned_cols=126  Identities=17%  Similarity=0.179  Sum_probs=86.8

Q ss_pred             ccceeEEEEcCCCCCC--cccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCC-
Q 024866           58 KSCIRSLQLRLVRDTP--SIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKD-  134 (261)
Q Consensus        58 ~~~L~~L~L~~c~~l~--~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~-  134 (261)
                      .++++.|+++++. +.  .++  ..+..+++|+.|++++|. +..+           +..+.+++|+.|+++++ ++.. 
T Consensus        16 ~~~l~~L~l~~n~-l~~~~~~--~~~~~l~~L~~L~l~~n~-l~~~-----------~~~~~l~~L~~L~Ls~n-~i~~~   79 (149)
T 2je0_A           16 PSDVKELVLDNSR-SNEGKLE--GLTDEFEELEFLSTINVG-LTSI-----------ANLPKLNKLKKLELSDN-RVSGG   79 (149)
T ss_dssp             GGGCSEEECTTCB-CBTTBCC--SCCTTCTTCCEEECTTSC-CCCC-----------TTCCCCTTCCEEECCSS-CCCSC
T ss_pred             CccCeEEEccCCc-CChhHHH--HHHhhcCCCcEEECcCCC-CCCc-----------hhhhcCCCCCEEECCCC-cccch
Confidence            3579999999974 33  443  456888999999999874 4432           22356889999999988 4665 


Q ss_pred             CCc-cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC----CCccCCccceeee
Q 024866          135 VTF-LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW----KPLPFTHLKKMAV  209 (261)
Q Consensus       135 l~~-l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~----~~~~~p~L~~L~i  209 (261)
                      ++. ...+++|++|+++++. ++.+..          +..+..+++|+.|++.+++ ++.+..    ....+++|+.|++
T Consensus        80 ~~~~~~~l~~L~~L~ls~N~-i~~~~~----------~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           80 LEVLAEKCPNLTHLNLSGNK-IKDLST----------IEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             THHHHHHCTTCCEEECTTSC-CCSHHH----------HGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred             HHHHhhhCCCCCEEECCCCc-CCChHH----------HHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence            332 2458999999999874 443221          0144568899999999874 666653    2345788888876


Q ss_pred             cc
Q 024866          210 LM  211 (261)
Q Consensus       210 ~~  211 (261)
                      ++
T Consensus       148 ~d  149 (149)
T 2je0_A          148 YD  149 (149)
T ss_dssp             BC
T ss_pred             CC
Confidence            53

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.44  E-value=6.5e-06  Score=76.86  Aligned_cols=115  Identities=15%  Similarity=0.069  Sum_probs=69.9

Q ss_pred             CcCCCCCcEEEEecCCCCCCCCc----cccCCCCcEEEEeccccccc-ccccccc--cccC-------cc-cCCcccC-C
Q 024866          115 PFVFRSLHRVIIGECHKLKDVTF----LVFAPNLKSLRLFDCGAMEE-IISVGKI--AETP-------EM-MGHISPF-E  178 (261)
Q Consensus       115 ~~~~~~L~~L~l~~C~~l~~l~~----l~~lp~L~~L~i~~C~~L~~-i~~~~~~--~~~~-------~~-~~~~~~~-p  178 (261)
                      .+.+++|+.|+++++ +++.+..    +..+++|++|+++++. +.. +......  ....       .+ ......+ +
T Consensus       373 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  450 (562)
T 3a79_B          373 CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP  450 (562)
T ss_dssp             CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCT
T ss_pred             hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCCCCCcchhhhhcC
Confidence            456777888888776 5665432    3567788888877764 222 2211000  0000       00 0011223 6


Q ss_pred             cccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          179 NLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       179 ~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      +|+.|++.++ +++.++.....+++|+.|+++++ +++.+|.........|+.+.
T Consensus       451 ~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~  503 (562)
T 3a79_B          451 KVKVLDLHNN-RIMSIPKDVTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIW  503 (562)
T ss_dssp             TCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEE
T ss_pred             cCCEEECCCC-cCcccChhhcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEE
Confidence            8999999887 68888877778999999999997 57788876333345555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.42  E-value=8.1e-07  Score=70.37  Aligned_cols=127  Identities=13%  Similarity=0.157  Sum_probs=84.5

Q ss_pred             ccceeEEEEcCCCCCCcccccccccccC-CCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC
Q 024866           58 KSCIRSLQLRLVRDTPSIIDATAFADLN-HLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT  136 (261)
Q Consensus        58 ~~~L~~L~L~~c~~l~~l~~~~~l~~l~-~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~  136 (261)
                      ...|+.|+++++ ++..+   +.+..+. +|+.|+++++. +..+           +....+++|+.|+++++ +++.++
T Consensus        18 ~~~L~~L~l~~n-~l~~i---~~~~~~~~~L~~L~Ls~N~-l~~~-----------~~l~~l~~L~~L~Ls~N-~l~~~~   80 (176)
T 1a9n_A           18 AVRDRELDLRGY-KIPVI---ENLGATLDQFDAIDFSDNE-IRKL-----------DGFPLLRRLKTLLVNNN-RICRIG   80 (176)
T ss_dssp             TTSCEEEECTTS-CCCSC---CCGGGGTTCCSEEECCSSC-CCEE-----------CCCCCCSSCCEEECCSS-CCCEEC
T ss_pred             cCCceEEEeeCC-CCchh---HHhhhcCCCCCEEECCCCC-CCcc-----------cccccCCCCCEEECCCC-cccccC
Confidence            347889999987 44555   3455554 89999998874 4443           22356889999999887 576664


Q ss_pred             c--cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC----CccCCccceeeec
Q 024866          137 F--LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK----PLPFTHLKKMAVL  210 (261)
Q Consensus       137 ~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~----~~~~p~L~~L~i~  210 (261)
                      .  ...+++|++|+++++. +..+...          ..+..+++|+.|++.+.+ +..++..    ...+|+|+.|++.
T Consensus        81 ~~~~~~l~~L~~L~L~~N~-i~~~~~~----------~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           81 EGLDQALPDLTELILTNNS-LVELGDL----------DPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             SCHHHHCTTCCEEECCSCC-CCCGGGG----------GGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cchhhcCCCCCEEECCCCc-CCcchhh----------HhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCC
Confidence            2  3678999999999873 3333210          134568899999998876 4555432    3356777777666


Q ss_pred             cCc
Q 024866          211 MCD  213 (261)
Q Consensus       211 ~C~  213 (261)
                      ++.
T Consensus       149 ~n~  151 (176)
T 1a9n_A          149 KVK  151 (176)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.40  E-value=3.2e-06  Score=69.55  Aligned_cols=129  Identities=19%  Similarity=0.164  Sum_probs=85.4

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc-
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF-  137 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~-  137 (261)
                      ..++.|++++. ++..++. ..+..+++|+.|+++++. +..+..         .....+++|+.|+++++ +++.++. 
T Consensus        32 ~~l~~L~l~~n-~i~~i~~-~~~~~l~~L~~L~Ls~N~-i~~~~~---------~~~~~l~~L~~L~Ls~N-~l~~l~~~   98 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPP-GAFSPYKKLRRIDLSNNQ-ISELAP---------DAFQGLRSLNSLVLYGN-KITELPKS   98 (220)
T ss_dssp             TTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECCSSC-CCEECT---------TTTTTCSSCCEEECCSS-CCCCCCTT
T ss_pred             cCCCEEECCCC-cCCCcCH-hHhhCCCCCCEEECCCCc-CCCcCH---------HHhhCCcCCCEEECCCC-cCCccCHh
Confidence            46788888875 4555543 467788888888888764 333311         12356788888888887 5766643 


Q ss_pred             -cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCc
Q 024866          138 -LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCD  213 (261)
Q Consensus       138 -l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~  213 (261)
                       ...+++|++|+++++ .+..+..           ..+..+++|+.|++.+.. ++.+... ...+++|+.|.+.+.+
T Consensus        99 ~f~~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B           99 LFEGLFSLQLLLLNAN-KINCLRV-----------DAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTTTCTTCCEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HccCCCCCCEEECCCC-CCCEeCH-----------HHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCC
Confidence             356888899888886 3433321           244567888888888754 6666543 3347788888776643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.37  E-value=4.6e-06  Score=68.62  Aligned_cols=130  Identities=12%  Similarity=0.126  Sum_probs=88.3

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc-
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF-  137 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~-  137 (261)
                      ..++.|++++. ++..+.....+..+++|+.|+++++. +..+..         .....+++|+.|+++++ +++.+.. 
T Consensus        32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~---------~~~~~l~~L~~L~Ls~N-~l~~~~~~   99 (220)
T 2v70_A           32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK-ITDIEE---------GAFEGASGVNEILLTSN-RLENVQHK   99 (220)
T ss_dssp             TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC-CCEECT---------TTTTTCTTCCEEECCSS-CCCCCCGG
T ss_pred             CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc-CCEECH---------HHhCCCCCCCEEECCCC-ccCccCHh
Confidence            35678888875 45555332457888999999988765 444421         12356889999999887 5666643 


Q ss_pred             -cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCc
Q 024866          138 -LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCD  213 (261)
Q Consensus       138 -l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~  213 (261)
                       +..+++|++|+++++. +..+..           ..+..+++|+.|++.+. +++.+.. ....+++|+.|.+.+.+
T Consensus       100 ~~~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          100 MFKGLESLKTLMLRSNR-ITCVGN-----------DSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             GGTTCSSCCEEECTTSC-CCCBCT-----------TSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             HhcCCcCCCEEECCCCc-CCeECH-----------hHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcC
Confidence             5678999999998863 433322           24456788999999885 4676643 34457888888887654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.36  E-value=6.6e-07  Score=78.01  Aligned_cols=188  Identities=15%  Similarity=0.157  Sum_probs=121.2

Q ss_pred             eeEeeeccccccccCCCcchh--hhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccc
Q 024866            6 WFNFHEASEESVLFGGGEVLV--QELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFAD   83 (261)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~l--~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~   83 (261)
                      .|+-++..+..++++.....+  ..+..+++|+.|++......   .+...  ...+|++|+++++ .+..++. ..+..
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~l~~~--~~~~L~~L~l~~n-~i~~~~~-~~~~~  145 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV---EIPPN--LPSSLVELRIHDN-RIRKVPK-GVFSG  145 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC---SCCSS--CCTTCCEEECCSS-CCCCCCS-GGGSS
T ss_pred             HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC---ccCcc--ccccCCEEECCCC-ccCccCH-hHhCC
Confidence            455677788888887765444  67888999999998744322   12111  1257888888875 3444433 44677


Q ss_pred             cCCCCeEEEeccCC--------------cceEecc---------------------cccccccC-CCCcCCCCCcEEEEe
Q 024866           84 LNHLNELYIFKGIE--------------LEELKID---------------------YTEIVRKR-REPFVFRSLHRVIIG  127 (261)
Q Consensus        84 l~~L~~L~i~~c~~--------------Le~l~~~---------------------~~~~~~~~-p~~~~~~~L~~L~l~  127 (261)
                      +++|+.|+++++.-              |+.+.+.                     .....+.. .....+++|+.|+++
T Consensus       146 l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~  225 (332)
T 2ft3_A          146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG  225 (332)
T ss_dssp             CSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred             CccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            78888888776532              2222211                     11111111 124578899999999


Q ss_pred             cCCCCCCCC--ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCc------
Q 024866          128 ECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPL------  199 (261)
Q Consensus       128 ~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~------  199 (261)
                      ++ ++..+.  .+..+++|++|+++++ .+..+.            ..+..+++|+.|++.+.+ ++.+.....      
T Consensus       226 ~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp------------~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~  290 (332)
T 2ft3_A          226 HN-QIRMIENGSLSFLPTLRELHLDNN-KLSRVP------------AGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFG  290 (332)
T ss_dssp             SS-CCCCCCTTGGGGCTTCCEEECCSS-CCCBCC------------TTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCC
T ss_pred             CC-cCCcCChhHhhCCCCCCEEECCCC-cCeecC------------hhhhcCccCCEEECCCCC-CCccChhHccccccc
Confidence            87 566664  4678999999999987 344332            245678999999999864 776654221      


Q ss_pred             -cCCccceeeeccCccC
Q 024866          200 -PFTHLKKMAVLMCDQL  215 (261)
Q Consensus       200 -~~p~L~~L~i~~C~~L  215 (261)
                       .+++|+.|.+.+++-.
T Consensus       291 ~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          291 VKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             SSSCCBSEEECCSSSSC
T ss_pred             cccccccceEeecCccc
Confidence             2578999999998743

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.36  E-value=5.5e-06  Score=68.53  Aligned_cols=142  Identities=15%  Similarity=0.100  Sum_probs=98.9

Q ss_pred             eEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cc
Q 024866           62 RSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LV  139 (261)
Q Consensus        62 ~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~  139 (261)
                      +.++.++ .++..++.    +-.++|+.|+++++. +..+..         .....+++|+.|+++++ ++..++.  +.
T Consensus        22 ~~v~c~~-~~l~~ip~----~~~~~L~~L~Ls~n~-i~~~~~---------~~~~~l~~L~~L~L~~N-~l~~i~~~~~~   85 (229)
T 3e6j_A           22 TTVDCRS-KRHASVPA----GIPTNAQILYLHDNQ-ITKLEP---------GVFDSLINLKELYLGSN-QLGALPVGVFD   85 (229)
T ss_dssp             TEEECTT-SCCSSCCS----CCCTTCSEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSS-CCCCCCTTTTT
T ss_pred             CEeEccC-CCcCccCC----CCCCCCCEEEcCCCc-cCccCH---------HHhhCccCCcEEECCCC-CCCCcChhhcc
Confidence            3455443 34555542    223789999998865 332211         12357899999999987 5777643  46


Q ss_pred             cCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866          140 FAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP  219 (261)
Q Consensus       140 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp  219 (261)
                      .+++|++|+++++ .++.+..           ..+..+++|+.|++.+.. ++.++.....+++|+.|.++++ +++.+|
T Consensus        86 ~l~~L~~L~Ls~N-~l~~l~~-----------~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~~~  151 (229)
T 3e6j_A           86 SLTQLTVLDLGTN-QLTVLPS-----------AVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQN-QLKSIP  151 (229)
T ss_dssp             TCTTCCEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSS-CCCCCC
T ss_pred             cCCCcCEEECCCC-cCCccCh-----------hHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCC-cCCccC
Confidence            7999999999996 4554432           134568999999998864 8888777778999999999997 778888


Q ss_pred             CCCccccCCceEEE
Q 024866          220 LDSNSAKERKFVIR  233 (261)
Q Consensus       220 ~~~~~~~~~l~~~~  233 (261)
                      ........+|+.+.
T Consensus       152 ~~~~~~l~~L~~L~  165 (229)
T 3e6j_A          152 HGAFDRLSSLTHAY  165 (229)
T ss_dssp             TTTTTTCTTCCEEE
T ss_pred             HHHHhCCCCCCEEE
Confidence            65554456666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.34  E-value=1.9e-06  Score=80.76  Aligned_cols=128  Identities=12%  Similarity=0.123  Sum_probs=73.8

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--  136 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--  136 (261)
                      .+++.|+|++ ..++.++. .++..+++|++|++++|. ++.|..+         ....+++|++|+++++ +++.++  
T Consensus        52 ~~~~~LdLs~-N~i~~l~~-~~f~~l~~L~~L~Ls~N~-i~~i~~~---------~f~~L~~L~~L~Ls~N-~l~~l~~~  118 (635)
T 4g8a_A           52 FSTKNLDLSF-NPLRHLGS-YSFFSFPELQVLDLSRCE-IQTIEDG---------AYQSLSHLSTLILTGN-PIQSLALG  118 (635)
T ss_dssp             TTCCEEECTT-SCCCEECT-TTTTTCTTCCEEECTTCC-CCEECTT---------TTTTCTTCCEEECTTC-CCCEECGG
T ss_pred             cCCCEEEeeC-CCCCCCCH-HHHhCCCCCCEEECCCCc-CCCcChh---------HhcCCCCCCEEEccCC-cCCCCCHH
Confidence            4677777776 45666654 567777777777777764 4443211         1245677777777776 466553  


Q ss_pred             ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccccc--CCCccCCccceeeeccC
Q 024866          137 FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIF--WKPLPFTHLKKMAVLMC  212 (261)
Q Consensus       137 ~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~--~~~~~~p~L~~L~i~~C  212 (261)
                      .+..+++|++|+++++ .++.+..           ..+..+++|+.|++.+.. ++.+.  .....+++|++|.++++
T Consensus       119 ~f~~L~~L~~L~Ls~N-~l~~l~~-----------~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          119 AFSGLSSLQKLVAVET-NLASLEN-----------FPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             GGTTCTTCCEEECTTS-CCCCSTT-----------CCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             HhcCCCCCCEEECCCC-cCCCCCh-----------hhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCc
Confidence            2456777777777776 3333321           123456667777776543 33322  12234566677666655

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.33  E-value=2e-07  Score=82.96  Aligned_cols=66  Identities=18%  Similarity=0.130  Sum_probs=30.9

Q ss_pred             hhcccCCceEEEEEcc--------hHHHHHHhhCcccccceeEEEEcCCCCCCcc---cccccccccCCCCeEEEecc
Q 024866           29 LLGLKYLEVLELTLGS--------YQALQILLSSNKLKSCIRSLQLRLVRDTPSI---IDATAFADLNHLNELYIFKG   95 (261)
Q Consensus        29 L~~L~~L~~L~i~~~~--------~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l---~~~~~l~~l~~L~~L~i~~c   95 (261)
                      +..+++|+.|++....        ...+..+.......++|++|+++++. +...   .++..+..+++|++|++++|
T Consensus        56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n  132 (386)
T 2ca6_A           56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNN  132 (386)
T ss_dssp             TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence            4455666666555321        01223332222223456666666543 2221   01134556667777777665

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.33  E-value=6.3e-08  Score=90.63  Aligned_cols=63  Identities=19%  Similarity=0.122  Sum_probs=35.8

Q ss_pred             cccCCceEEEEEcch--HHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccC
Q 024866           31 GLKYLEVLELTLGSY--QALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGI   96 (261)
Q Consensus        31 ~L~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~   96 (261)
                      .+++|+.|++.....  ..+..+...   .++|++|++.+|..+....+......+++|++|++++|.
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKS---FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHH---CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHh---CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            466777777775332  223333211   347788888877654443221233467778888877765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.32  E-value=3.6e-07  Score=79.00  Aligned_cols=178  Identities=16%  Similarity=0.099  Sum_probs=101.1

Q ss_pred             cccccccCCCc--chhhhh--hcccCCceEEEEEcchHH----HHHHhhCcccccceeEEEEcCCCCCCccccccccccc
Q 024866           13 SEESVLFGGGE--VLVQEL--LGLKYLEVLELTLGSYQA----LQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADL   84 (261)
Q Consensus        13 ~~~~~~~~~~~--~~l~eL--~~L~~L~~L~i~~~~~~~----l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l   84 (261)
                      .+..++++...  .....+  ..+++|+.|++.......    +......  ..++|+.|+++++. +..++. ..++.+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~--~~~~L~~L~Ls~n~-l~~~~~-~~~~~l  168 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW--LKPGLKVLSIAQAH-SPAFSC-EQVRAF  168 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT--BCSCCCEEEEECCS-SCCCCT-TSCCCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh--hccCCCEEEeeCCC-cchhhH-HHhccC
Confidence            45555555432  222233  567777777777433221    1111111  23467777777753 333332 456677


Q ss_pred             CCCCeEEEeccCC-----------------cceEecccccccccCCC-----CcCCCCCcEEEEecCCCCCCCC--cccc
Q 024866           85 NHLNELYIFKGIE-----------------LEELKIDYTEIVRKRRE-----PFVFRSLHRVIIGECHKLKDVT--FLVF  140 (261)
Q Consensus        85 ~~L~~L~i~~c~~-----------------Le~l~~~~~~~~~~~p~-----~~~~~~L~~L~l~~C~~l~~l~--~l~~  140 (261)
                      ++|++|+++++.-                 |+.+.+..... ..++.     ...+++|++|+++++ ++.+..  .+..
T Consensus       169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~  246 (310)
T 4glp_A          169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPR  246 (310)
T ss_dssp             TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSS
T ss_pred             CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHh
Confidence            7777777776642                 11111111110 00011     135689999999988 566652  1233


Q ss_pred             ---CCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCc
Q 024866          141 ---APNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCD  213 (261)
Q Consensus       141 ---lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~  213 (261)
                         +++|++|+++++ .++.+..            .+  +++|+.|++++.. ++.++. ...+++|+.|.+++.+
T Consensus       247 ~~~~~~L~~L~Ls~N-~l~~lp~------------~~--~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          247 CMWSSALNSLNLSFA-GLEQVPK------------GL--PAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCCCTTCCCEECCSS-CCCSCCS------------CC--CSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred             ccCcCcCCEEECCCC-CCCchhh------------hh--cCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence               489999999986 3444322            22  4899999998864 776643 5567899999887754

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.29  E-value=2.4e-06  Score=66.86  Aligned_cols=126  Identities=18%  Similarity=0.119  Sum_probs=87.2

Q ss_pred             ccCCCCeEEEeccCCcceEecccccccccCCC-CcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccccc
Q 024866           83 DLNHLNELYIFKGIELEELKIDYTEIVRKRRE-PFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISV  161 (261)
Q Consensus        83 ~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~-~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~  161 (261)
                      ..++|+.|++++|. +..         +.+|. ...+++|+.|++.+|. ++.+..+..+++|++|++++|. +...+. 
T Consensus        22 ~~~~L~~L~l~~n~-l~~---------~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-   88 (168)
T 2ell_A           22 TPAAVRELVLDNCK-SND---------GKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENR-IFGGLD-   88 (168)
T ss_dssp             CTTSCSEEECCSCB-CBT---------TBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCC-CCSCCC-
T ss_pred             CcccCCEEECCCCC-CCh---------hhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCc-CchHHH-
Confidence            45789999999886 320         01122 3678999999999984 8877667789999999999975 333211 


Q ss_pred             ccccccCcccCCcccCCcccEEeccCCccccccc--CCCccCCccceeeeccCccCCCCCC---CCccccCCceEEE
Q 024866          162 GKIAETPEMMGHISPFENLQSLDLDDLPHLKSIF--WKPLPFTHLKKMAVLMCDQLRKPPL---DSNSAKERKFVIR  233 (261)
Q Consensus       162 ~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~L~~lp~---~~~~~~~~l~~~~  233 (261)
                                .....+++|+.|++.++ +++.++  .....+++|+.|.+++|+ +..+|.   ........|+.+.
T Consensus        89 ----------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~  153 (168)
T 2ell_A           89 ----------MLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLD  153 (168)
T ss_dssp             ----------HHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEET
T ss_pred             ----------HHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEec
Confidence                      12345899999999998 577765  344568999999999984 555554   2222235566543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.28  E-value=3.7e-07  Score=85.38  Aligned_cols=39  Identities=15%  Similarity=0.290  Sum_probs=28.1

Q ss_pred             ccCCcccEEeccCCccccccc--CCCccCCccceeeeccCcc
Q 024866          175 SPFENLQSLDLDDLPHLKSIF--WKPLPFTHLKKMAVLMCDQ  214 (261)
Q Consensus       175 ~~~p~L~~L~L~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~  214 (261)
                      ..+++|+.|++.+|+- ....  .....+++|+.|++++|+.
T Consensus       478 ~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          478 SGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             hcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            3478999999999884 3221  1233578999999999976

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.26  E-value=1.1e-05  Score=73.66  Aligned_cols=73  Identities=15%  Similarity=0.075  Sum_probs=42.3

Q ss_pred             cccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEE
Q 024866           13 SEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYI   92 (261)
Q Consensus        13 ~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i   92 (261)
                      .+..++++.....+.++..+++|+.|.+......      ..+....+|+.|+++++ .+..+   +.++.+++|+.|++
T Consensus       175 L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~------~l~~~~~~L~~L~l~~n-~l~~l---p~~~~l~~L~~L~l  244 (454)
T 1jl5_A          175 LEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK------KLPDLPLSLESIVAGNN-ILEEL---PELQNLPFLTTIYA  244 (454)
T ss_dssp             CCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS------SCCCCCTTCCEEECCSS-CCSSC---CCCTTCTTCCEEEC
T ss_pred             ccEEECcCCcCCcCccccCCCCCCEEECCCCcCC------cCCCCcCcccEEECcCC-cCCcc---cccCCCCCCCEEEC
Confidence            3444454444444445666677777766532211      11122246788888876 34444   34778888888888


Q ss_pred             ecc
Q 024866           93 FKG   95 (261)
Q Consensus        93 ~~c   95 (261)
                      +++
T Consensus       245 ~~N  247 (454)
T 1jl5_A          245 DNN  247 (454)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            775

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.23  E-value=7.3e-06  Score=72.41  Aligned_cols=134  Identities=15%  Similarity=0.119  Sum_probs=91.4

Q ss_pred             cceeEEEEcCCCCCCccccccccc-ccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFA-DLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF  137 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~-~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~  137 (261)
                      ..++.|+|++. ++..++. ..+. .+++|+.|+++++. +..+..         .....+++|+.|+++++ +++.+..
T Consensus        39 ~~l~~L~Ls~N-~l~~l~~-~~~~~~l~~L~~L~L~~N~-i~~i~~---------~~~~~l~~L~~L~Ls~N-~l~~~~~  105 (361)
T 2xot_A           39 SYTALLDLSHN-NLSRLRA-EWTPTRLTNLHSLLLSHNH-LNFISS---------EAFVPVPNLRYLDLSSN-HLHTLDE  105 (361)
T ss_dssp             TTCSEEECCSS-CCCEECT-TSSSSCCTTCCEEECCSSC-CCEECT---------TTTTTCTTCCEEECCSS-CCCEECT
T ss_pred             CCCCEEECCCC-CCCccCh-hhhhhcccccCEEECCCCc-CCccCh---------hhccCCCCCCEEECCCC-cCCcCCH
Confidence            45788898875 5566654 4455 78899999988764 444421         11356889999999887 5666532


Q ss_pred             --cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCC----ccCCccceeeecc
Q 024866          138 --LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKP----LPFTHLKKMAVLM  211 (261)
Q Consensus       138 --l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~----~~~p~L~~L~i~~  211 (261)
                        +..+++|++|+++++. +..+..           ..+..+++|+.|++.+. +++.++...    ..+++|+.|++++
T Consensus       106 ~~~~~l~~L~~L~L~~N~-i~~~~~-----------~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A          106 FLFSDLQALEVLLLYNNH-IVVVDR-----------NAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCEECT-----------TTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCS
T ss_pred             HHhCCCcCCCEEECCCCc-ccEECH-----------HHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCC
Confidence              4678999999998864 333321           24556889999999885 477665543    3578999999988


Q ss_pred             CccCCCCC
Q 024866          212 CDQLRKPP  219 (261)
Q Consensus       212 C~~L~~lp  219 (261)
                      + +++.+|
T Consensus       173 N-~l~~l~  179 (361)
T 2xot_A          173 N-KLKKLP  179 (361)
T ss_dssp             S-CCCCCC
T ss_pred             C-CCCccC
Confidence            6 566666

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.20  E-value=2.4e-05  Score=63.22  Aligned_cols=125  Identities=19%  Similarity=0.132  Sum_probs=88.0

Q ss_pred             cCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEeccccccccccc
Q 024866           84 LNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISV  161 (261)
Q Consensus        84 l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~  161 (261)
                      .++|+.|+++++. +..+..         .....+++|+.|++.++ +++.+..  +..+++|++|+++++. ++.+.. 
T Consensus        27 ~~~l~~L~l~~n~-l~~~~~---------~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-   93 (208)
T 2o6s_A           27 PAQTTYLDLETNS-LKSLPN---------GVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPN-   93 (208)
T ss_dssp             CTTCSEEECCSSC-CCCCCT---------TTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT-
T ss_pred             CCCCcEEEcCCCc-cCcCCh---------hhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCc-CCccCH-
Confidence            4689999998874 332211         11357899999999987 6777643  4678999999999873 443322 


Q ss_pred             ccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          162 GKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       162 ~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                                ..+..+++|+.|++.+. +++.+... ...+++|+.|.++++ +++.+|........+|+.+.
T Consensus        94 ----------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~  154 (208)
T 2o6s_A           94 ----------GVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIW  154 (208)
T ss_dssp             ----------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred             ----------hHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEE
Confidence                      13456899999999886 47777654 346899999999997 57777765444456666654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.17  E-value=9.7e-07  Score=70.51  Aligned_cols=87  Identities=17%  Similarity=0.317  Sum_probs=46.6

Q ss_pred             CCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--cccc----CCCCcEEEEeccccccccc
Q 024866           86 HLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLVF----APNLKSLRLFDCGAMEEII  159 (261)
Q Consensus        86 ~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~~----lp~L~~L~i~~C~~L~~i~  159 (261)
                      +|+.|++++|. +...         .+.....+++|+.|++.+|..+++-.  .+..    .++|++|+|++|.++++..
T Consensus        62 ~L~~LDLs~~~-Itd~---------GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSI---------GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             CEEEEEEESCC-CCGG---------GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             eEeEEeCcCCC-ccHH---------HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            56777777765 3211         01112356677777777776666531  1222    2357777777776655421


Q ss_pred             ccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866          160 SVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS  193 (261)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  193 (261)
                      -.           .+..+++|++|++++|++++.
T Consensus       132 l~-----------~L~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          132 II-----------ALHHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             HH-----------HGGGCTTCCEEEEESCTTCCC
T ss_pred             HH-----------HHhcCCCCCEEECCCCCCCCc
Confidence            10           123456666666666666654

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.14  E-value=5.6e-07  Score=84.20  Aligned_cols=43  Identities=9%  Similarity=0.223  Sum_probs=23.4

Q ss_pred             CCcccEEeccCCcccccccCC--CccCCccceeeecc---CccCCCCCC
Q 024866          177 FENLQSLDLDDLPHLKSIFWK--PLPFTHLKKMAVLM---CDQLRKPPL  220 (261)
Q Consensus       177 ~p~L~~L~L~~~~~L~~i~~~--~~~~p~L~~L~i~~---C~~L~~lp~  220 (261)
                      +++|++|.+ .+.++..-...  ...+++|+.|.+.+   |.+++..|.
T Consensus       377 ~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~  424 (592)
T 3ogk_B          377 CQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL  424 (592)
T ss_dssp             CTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred             CccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence            556666665 33333321110  12367888888874   567776653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.10  E-value=4.4e-06  Score=64.00  Aligned_cols=113  Identities=18%  Similarity=0.138  Sum_probs=82.3

Q ss_pred             cccCCCCeEEEeccCCcc--eEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccc
Q 024866           82 ADLNHLNELYIFKGIELE--ELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEII  159 (261)
Q Consensus        82 ~~l~~L~~L~i~~c~~Le--~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~  159 (261)
                      ...++|+.|++++|. +.  .+          ++....+++|+.|++.+| +++.+..+..+++|++|+++++. +...+
T Consensus        14 ~~~~~l~~L~l~~n~-l~~~~~----------~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~Ls~n~-i~~~~   80 (149)
T 2je0_A           14 RTPSDVKELVLDNSR-SNEGKL----------EGLTDEFEELEFLSTINV-GLTSIANLPKLNKLKKLELSDNR-VSGGL   80 (149)
T ss_dssp             CCGGGCSEEECTTCB-CBTTBC----------CSCCTTCTTCCEEECTTS-CCCCCTTCCCCTTCCEEECCSSC-CCSCT
T ss_pred             CCCccCeEEEccCCc-CChhHH----------HHHHhhcCCCcEEECcCC-CCCCchhhhcCCCCCEEECCCCc-ccchH
Confidence            345789999999885 32  21          122367899999999998 68877667789999999999974 33311


Q ss_pred             ccccccccCcccCCcccCCcccEEeccCCccccccc--CCCccCCccceeeeccCccCCCCCC
Q 024866          160 SVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIF--WKPLPFTHLKKMAVLMCDQLRKPPL  220 (261)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~--~~~~~~p~L~~L~i~~C~~L~~lp~  220 (261)
                      .           .....+++|+.|++.++. ++.+.  .....+++|++|.+++| .+..+|.
T Consensus        81 ~-----------~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~  130 (149)
T 2je0_A           81 E-----------VLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLND  130 (149)
T ss_dssp             H-----------HHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred             H-----------HHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHH
Confidence            1           123458999999999876 66653  34567899999999998 5666664

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.10  E-value=7.2e-07  Score=79.40  Aligned_cols=36  Identities=14%  Similarity=-0.071  Sum_probs=23.5

Q ss_pred             CCcccEEeccCCccccc-----ccCCC-ccCCccceeeeccCc
Q 024866          177 FENLQSLDLDDLPHLKS-----IFWKP-LPFTHLKKMAVLMCD  213 (261)
Q Consensus       177 ~p~L~~L~L~~~~~L~~-----i~~~~-~~~p~L~~L~i~~C~  213 (261)
                      +++|++|++.++. +..     ++... ..+++|+.|.+++|+
T Consensus       273 ~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          273 NIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR  314 (386)
T ss_dssp             SCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred             CCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence            6778888887764 443     43222 236888888887774

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.06  E-value=1.4e-05  Score=75.25  Aligned_cols=108  Identities=19%  Similarity=0.187  Sum_probs=57.8

Q ss_pred             ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccc
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLV  139 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~  139 (261)
                      .|+.|+++++ ++..+   +.++.+++|+.|+++++. +..|          +...+.+++|+.|+++++ +++.++.++
T Consensus       442 ~L~~L~Ls~n-~l~~l---p~~~~l~~L~~L~Ls~N~-l~~l----------p~~~~~l~~L~~L~Ls~N-~l~~lp~l~  505 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVL---CHLEQLLLVTHLDLSHNR-LRAL----------PPALAALRCLEVLQASDN-ALENVDGVA  505 (567)
T ss_dssp             TCSEEECTTS-CCSSC---CCGGGGTTCCEEECCSSC-CCCC----------CGGGGGCTTCCEEECCSS-CCCCCGGGT
T ss_pred             CceEEEecCC-CCCCC---cCccccccCcEeecCccc-cccc----------chhhhcCCCCCEEECCCC-CCCCCcccC
Confidence            3556666664 44444   236666666666666653 2222          011245666677766665 455555555


Q ss_pred             cCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccccc
Q 024866          140 FAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIF  195 (261)
Q Consensus       140 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~  195 (261)
                      .+++|++|+++++ .+..+..          +..+..+++|+.|++.+.+ ++.++
T Consensus       506 ~l~~L~~L~Ls~N-~l~~~~~----------p~~l~~l~~L~~L~L~~N~-l~~~~  549 (567)
T 1dce_A          506 NLPRLQELLLCNN-RLQQSAA----------IQPLVSCPRLVLLNLQGNS-LCQEE  549 (567)
T ss_dssp             TCSSCCEEECCSS-CCCSSST----------TGGGGGCTTCCEEECTTSG-GGGSS
T ss_pred             CCCCCcEEECCCC-CCCCCCC----------cHHHhcCCCCCEEEecCCc-CCCCc
Confidence            6666777766664 2332210          1234456666666666644 44443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.05  E-value=6.9e-06  Score=64.90  Aligned_cols=127  Identities=11%  Similarity=0.041  Sum_probs=86.2

Q ss_pred             cccccCCCCeEEEeccCCcceEecccccccccCCCCc-CCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccc
Q 024866           80 AFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPF-VFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEI  158 (261)
Q Consensus        80 ~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~-~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i  158 (261)
                      .+....+|+.|+++++. +..+           +... ..++|+.|+++++ +++++..+..+++|++|+++++. +..+
T Consensus        14 ~~~~~~~L~~L~l~~n~-l~~i-----------~~~~~~~~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~~   79 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYK-IPVI-----------ENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRI   79 (176)
T ss_dssp             EEECTTSCEEEECTTSC-CCSC-----------CCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEE
T ss_pred             hcCCcCCceEEEeeCCC-Cchh-----------HHhhhcCCCCCEEECCCC-CCCcccccccCCCCCEEECCCCc-cccc
Confidence            34567788888888874 4332           2212 3459999999998 67777667789999999999974 4443


Q ss_pred             cccccccccCcccCCcccCCcccEEeccCCcccccccC--CCccCCccceeeeccCccCCCCCCC---CccccCCceEEE
Q 024866          159 ISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW--KPLPFTHLKKMAVLMCDQLRKPPLD---SNSAKERKFVIR  233 (261)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~p~L~~L~i~~C~~L~~lp~~---~~~~~~~l~~~~  233 (261)
                      ..           ..+..+++|+.|++.+.. +..++.  ....+++|+.|.+++++- ..+|..   .......|+.+.
T Consensus        80 ~~-----------~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld  146 (176)
T 1a9n_A           80 GE-----------GLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLD  146 (176)
T ss_dssp             CS-----------CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEET
T ss_pred             Cc-----------chhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeC
Confidence            21           012568999999999874 666654  345689999999999863 455543   122235566543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.04  E-value=8.5e-06  Score=76.72  Aligned_cols=154  Identities=16%  Similarity=0.099  Sum_probs=78.2

Q ss_pred             cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccC---------CcceEec
Q 024866           33 KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGI---------ELEELKI  103 (261)
Q Consensus        33 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~---------~Le~l~~  103 (261)
                      ++|+.|++.......   +.   ....+|+.|+++++ .+..++  . +..  +|+.|+++++.         +|+.+.+
T Consensus        80 ~~L~~L~Ls~N~l~~---ip---~~l~~L~~L~Ls~N-~l~~ip--~-l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNALIS---LP---ELPASLEYLDACDN-RLSTLP--E-LPA--SLKHLDVDNNQLTMLPELPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCCSC---CC---CCCTTCCEEECCSS-CCSCCC--C-CCT--TCCEEECCSSCCSCCCCCCTTCCEEEC
T ss_pred             CCCCEEECcCCCCcc---cc---cccCCCCEEEccCC-CCCCcc--h-hhc--CCCEEECCCCcCCCCCCcCccccEEeC
Confidence            567777766433221   11   23456777777765 344442  1 332  67777766543         1222222


Q ss_pred             ccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEE
Q 024866          104 DYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSL  183 (261)
Q Consensus       104 ~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L  183 (261)
                      ..... ..+|.  .+++|+.|+++++ +++.++.+  .++|++|+++++ .++.+....  .      .-....+.|+.|
T Consensus       148 s~N~l-~~lp~--~l~~L~~L~Ls~N-~L~~lp~l--~~~L~~L~Ls~N-~L~~lp~~~--~------~L~~~~~~L~~L  212 (571)
T 3cvr_A          148 DNNQL-TMLPE--LPTSLEVLSVRNN-QLTFLPEL--PESLEALDVSTN-LLESLPAVP--V------RNHHSEETEIFF  212 (571)
T ss_dssp             CSSCC-SCCCC--CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSSCCCCC----------------CCEEE
T ss_pred             CCCcc-CcCCC--cCCCcCEEECCCC-CCCCcchh--hCCCCEEECcCC-CCCchhhHH--H------hhhcccccceEE
Confidence            22111 11222  3456666666665 34444332  156666666664 333222100  0      000111223888


Q ss_pred             eccCCcccccccCCCccCCccceeeeccCcc
Q 024866          184 DLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQ  214 (261)
Q Consensus       184 ~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~  214 (261)
                      ++.+. +++.++.....+++|+.|.+++++-
T Consensus       213 ~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          213 RCREN-RITHIPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             ECCSS-CCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred             ecCCC-cceecCHHHhcCCCCCEEEeeCCcC
Confidence            88886 4777776666789999999988854

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.97  E-value=0.00015  Score=59.41  Aligned_cols=123  Identities=12%  Similarity=0.128  Sum_probs=84.6

Q ss_pred             CCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC--CccccCCCCcEEEEecccccccccccc
Q 024866           85 NHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV--TFLVFAPNLKSLRLFDCGAMEEIISVG  162 (261)
Q Consensus        85 ~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~  162 (261)
                      ++|+.|++++.. +..+..         .....+++|+.|+++++ ++..+  ..+..+++|++|+++++ .++.+..  
T Consensus        32 ~~l~~L~l~~n~-i~~i~~---------~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~--   97 (220)
T 2v9t_B           32 ETITEIRLEQNT-IKVIPP---------GAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGN-KITELPK--   97 (220)
T ss_dssp             TTCCEEECCSSC-CCEECT---------TSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSS-CCCCCCT--
T ss_pred             cCCCEEECCCCc-CCCcCH---------hHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCC-cCCccCH--
Confidence            689999988764 444321         12356889999999987 56665  23567899999999986 4444332  


Q ss_pred             cccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccCccCCCCCCCCccccCCceEE
Q 024866          163 KIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVI  232 (261)
Q Consensus       163 ~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  232 (261)
                               ..+..+++|+.|++.+.. ++.+... ...+++|+.|.++++. ++.++.........|+.+
T Consensus        98 ---------~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L  157 (220)
T 2v9t_B           98 ---------SLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTM  157 (220)
T ss_dssp             ---------TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred             ---------hHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEE
Confidence                     134568999999999864 7776543 4468999999999874 666665544334455543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.95  E-value=8.3e-05  Score=58.50  Aligned_cols=84  Identities=18%  Similarity=0.189  Sum_probs=47.6

Q ss_pred             cCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866          116 FVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS  193 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  193 (261)
                      ..+++|+.|++.++ +++.+..  +..+++|++|+++++ .+..+..           ..+..+++|+.|++.+. +++.
T Consensus        49 ~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-----------~~~~~l~~L~~L~l~~N-~l~~  114 (177)
T 2o6r_A           49 DKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPN-----------GVFDKLTQLKELALDTN-QLKS  114 (177)
T ss_dssp             TTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSS-CCSC
T ss_pred             cCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCH-----------HHhhCCcccCEEECcCC-cceE
Confidence            44667777777665 4555432  345677777777664 2332221           12344667777777665 4565


Q ss_pred             ccCCC-ccCCccceeeeccCc
Q 024866          194 IFWKP-LPFTHLKKMAVLMCD  213 (261)
Q Consensus       194 i~~~~-~~~p~L~~L~i~~C~  213 (261)
                      ++... ..+++|++|++.+++
T Consensus       115 ~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          115 VPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC
T ss_pred             eCHHHhcCCcccCEEEecCCC
Confidence            55433 346677777666653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.92  E-value=0.0002  Score=58.62  Aligned_cols=143  Identities=10%  Similarity=0.076  Sum_probs=92.6

Q ss_pred             eEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccc
Q 024866           62 RSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLV  139 (261)
Q Consensus        62 ~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~  139 (261)
                      +++++++. +++.++.  .+  .+.++.|++++.. +..+...        .....+++|+.|+++++ +++.+.  .+.
T Consensus        14 ~~l~~s~n-~l~~iP~--~~--~~~~~~L~L~~N~-l~~~~~~--------~~~~~l~~L~~L~L~~N-~i~~i~~~~~~   78 (220)
T 2v70_A           14 TTVDCSNQ-KLNKIPE--HI--PQYTAELRLNNNE-FTVLEAT--------GIFKKLPQLRKINFSNN-KITDIEEGAFE   78 (220)
T ss_dssp             TEEECCSS-CCSSCCS--CC--CTTCSEEECCSSC-CCEECCC--------CCGGGCTTCCEEECCSS-CCCEECTTTTT
T ss_pred             CEeEeCCC-CcccCcc--CC--CCCCCEEEcCCCc-CCccCch--------hhhccCCCCCEEECCCC-cCCEECHHHhC
Confidence            35666653 4455542  22  3467888888764 4433110        01257899999999987 577664  357


Q ss_pred             cCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCccCCCC
Q 024866          140 FAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRKP  218 (261)
Q Consensus       140 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~l  218 (261)
                      .+++|++|+++++. ++.+..           ..+..+++|++|++.+.. ++.+.. ....+++|+.|.++++ +++.+
T Consensus        79 ~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~  144 (220)
T 2v70_A           79 GASGVNEILLTSNR-LENVQH-----------KMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN-QITTV  144 (220)
T ss_dssp             TCTTCCEEECCSSC-CCCCCG-----------GGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTS-CCCCB
T ss_pred             CCCCCCEEECCCCc-cCccCH-----------hHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCC-cCCEE
Confidence            79999999999863 443332           134568999999999865 666643 3456899999999987 46666


Q ss_pred             CCCCccccCCceEEE
Q 024866          219 PLDSNSAKERKFVIR  233 (261)
Q Consensus       219 p~~~~~~~~~l~~~~  233 (261)
                      +........+|+.+.
T Consensus       145 ~~~~~~~l~~L~~L~  159 (220)
T 2v70_A          145 APGAFDTLHSLSTLN  159 (220)
T ss_dssp             CTTTTTTCTTCCEEE
T ss_pred             CHHHhcCCCCCCEEE
Confidence            444443345555543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.90  E-value=7e-06  Score=76.86  Aligned_cols=104  Identities=13%  Similarity=0.128  Sum_probs=66.6

Q ss_pred             cCCCCCcEEEEecCCCCCCC--CccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866          116 FVFRSLHRVIIGECHKLKDV--TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS  193 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  193 (261)
                      ..+++|+.|++.++.....+  ..+..+++|++|++++| .++.++.           ..+..+++|+.|+|++. +++.
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-----------~~f~~l~~L~~L~Ls~N-~l~~  532 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSP-----------TAFNSLSSLQVLNMSHN-NFFS  532 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECT-----------TTTTTCTTCCEEECTTS-CCCB
T ss_pred             ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcCh-----------HHHcCCCCCCEEECCCC-cCCC
Confidence            45667777777766433332  12456778888888876 4444432           24567899999999986 4777


Q ss_pred             ccCCC-ccCCccceeeeccCccCCCCCCCCcc-ccCCceEEE
Q 024866          194 IFWKP-LPFTHLKKMAVLMCDQLRKPPLDSNS-AKERKFVIR  233 (261)
Q Consensus       194 i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~-~~~~l~~~~  233 (261)
                      +.... ..+++|+.|+++++. ++.++..... .+.+|+.+.
T Consensus       533 l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~  573 (635)
T 4g8a_A          533 LDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLN  573 (635)
T ss_dssp             CCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEE
T ss_pred             CChhHHhCCCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEE
Confidence            76543 457999999999874 5555543332 234566643

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.88  E-value=1.9e-05  Score=76.47  Aligned_cols=37  Identities=14%  Similarity=0.089  Sum_probs=16.5

Q ss_pred             ccCCcccEEeccCCcccccccCCCccCCccceeeeccC
Q 024866          175 SPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMC  212 (261)
Q Consensus       175 ~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C  212 (261)
                      ..+++|+.|+|.++ .++.++.....+++|+.|.++++
T Consensus       290 ~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          290 GSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             GGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTS
T ss_pred             cCCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCC
Confidence            33444555554443 24444433334444444444444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.86  E-value=1.6e-05  Score=70.05  Aligned_cols=87  Identities=13%  Similarity=-0.054  Sum_probs=46.1

Q ss_pred             eeeccccccccCCCcchh------hhhhccc-CCceEEEEEcchHH--HHHHhhCccc-ccceeEEEEcCCCCCCcccc-
Q 024866            9 FHEASEESVLFGGGEVLV------QELLGLK-YLEVLELTLGSYQA--LQILLSSNKL-KSCIRSLQLRLVRDTPSIID-   77 (261)
Q Consensus         9 ~~~~~~~~~~~~~~~~~l------~eL~~L~-~L~~L~i~~~~~~~--l~~l~~~~~l-~~~L~~L~L~~c~~l~~l~~-   77 (261)
                      ..+..+..|+++......      +.+..++ +|+.|++.......  ...+...... ..+|+.|+++++. +..... 
T Consensus        20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~   98 (362)
T 3goz_A           20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSD   98 (362)
T ss_dssp             SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHH
T ss_pred             CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHH
Confidence            334466677766643322      5666777 78888887543222  2222221111 1468888888774 332221 


Q ss_pred             --ccccccc-CCCCeEEEeccC
Q 024866           78 --ATAFADL-NHLNELYIFKGI   96 (261)
Q Consensus        78 --~~~l~~l-~~L~~L~i~~c~   96 (261)
                        ...+..+ ++|+.|++++|.
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~  120 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWND  120 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSC
T ss_pred             HHHHHHHhCCCCccEEECcCCc
Confidence              0123334 678888887653

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.83  E-value=3.8e-05  Score=68.22  Aligned_cols=87  Identities=15%  Similarity=0.168  Sum_probs=46.0

Q ss_pred             CCCCCcEEEEecC-------CCCCCCCc-c--ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEecc
Q 024866          117 VFRSLHRVIIGEC-------HKLKDVTF-L--VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLD  186 (261)
Q Consensus       117 ~~~~L~~L~l~~C-------~~l~~l~~-l--~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~  186 (261)
                      .+|+|+.|+++.+       ..+..+.. +  ..+|+|++|.+++|..-......        + .....+|+|++|+|+
T Consensus       217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~--------l-a~a~~~~~L~~LdLs  287 (362)
T 2ra8_A          217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM--------F-LESDILPQLETMDIS  287 (362)
T ss_dssp             BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH--------H-HHCSSGGGCSEEECC
T ss_pred             cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH--------H-HhCccCCCCCEEECC
Confidence            4677777777532       11222211 1  24778888888776432111000        0 011247788888885


Q ss_pred             CCccccc-----ccCCCccCCccceeeeccCc
Q 024866          187 DLPHLKS-----IFWKPLPFTHLKKMAVLMCD  213 (261)
Q Consensus       187 ~~~~L~~-----i~~~~~~~p~L~~L~i~~C~  213 (261)
                      . ..+..     +..+...+++|+.|++++|.
T Consensus       288 ~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          288 A-GVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             S-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             C-CCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            4 33544     22222456888888887773

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.80  E-value=3.2e-06  Score=76.52  Aligned_cols=86  Identities=16%  Similarity=0.105  Sum_probs=53.9

Q ss_pred             CCCCcEEEEecCCCCCCCC------ccccCCCCcEEEEecccccccccccccccccCcccCCc-ccCCcccEEeccCCcc
Q 024866          118 FRSLHRVIIGECHKLKDVT------FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHI-SPFENLQSLDLDDLPH  190 (261)
Q Consensus       118 ~~~L~~L~l~~C~~l~~l~------~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~-~~~p~L~~L~L~~~~~  190 (261)
                      .++|+.|++++|. +.+..      .+..+++|++|+++++ .+.+.....-       ...+ ...++|++|++.++. 
T Consensus       312 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l-------~~~l~~~~~~L~~L~L~~n~-  381 (461)
T 1z7x_W          312 GCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVREL-------CQGLGQPGSVLRVLWLADCD-  381 (461)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHH-------HHHHTSTTCCCCEEECTTSC-
T ss_pred             CccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHH-------HHHHcCCCCceEEEECCCCC-
Confidence            3588888888884 54431      2345788999998887 3433211000       0011 126789999999984 


Q ss_pred             cc-----cccCCCccCCccceeeeccCc
Q 024866          191 LK-----SIFWKPLPFTHLKKMAVLMCD  213 (261)
Q Consensus       191 L~-----~i~~~~~~~p~L~~L~i~~C~  213 (261)
                      +.     .++.....+++|++|++++|+
T Consensus       382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          382 VSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence            55     343333457999999999984

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.78  E-value=0.00029  Score=66.24  Aligned_cols=161  Identities=16%  Similarity=0.096  Sum_probs=81.1

Q ss_pred             CCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccC---------CcceEecc
Q 024866           34 YLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGI---------ELEELKID  104 (261)
Q Consensus        34 ~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~---------~Le~l~~~  104 (261)
                      +|+.|++.......   +...  ..++|+.|+++++ .+..++     ..+++|+.|+++++.         +|+.+.+.
T Consensus        60 ~L~~L~Ls~n~L~~---lp~~--l~~~L~~L~Ls~N-~l~~ip-----~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS---LPDN--LPPQITVLEITQN-ALISLP-----ELPASLEYLDACDNRLSTLPELPASLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC---CCSC--CCTTCSEEECCSS-CCSCCC-----CCCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred             CccEEEeCCCCCCc---cCHh--HcCCCCEEECcCC-CCcccc-----cccCCCCEEEccCCCCCCcchhhcCCCEEECC
Confidence            67777776433221   2221  2356888888875 344442     446788888887652         22223222


Q ss_pred             cccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEe
Q 024866          105 YTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLD  184 (261)
Q Consensus       105 ~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~  184 (261)
                      .... ..+|.  .+++|+.|+++++ +++.++.  .+++|++|+++++. +..            ++. +.  ++|+.|+
T Consensus       129 ~N~l-~~lp~--~l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~-L~~------------lp~-l~--~~L~~L~  186 (571)
T 3cvr_A          129 NNQL-TMLPE--LPALLEYINADNN-QLTMLPE--LPTSLEVLSVRNNQ-LTF------------LPE-LP--ESLEALD  186 (571)
T ss_dssp             SSCC-SCCCC--CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSC------------CCC-CC--TTCCEEE
T ss_pred             CCcC-CCCCC--cCccccEEeCCCC-ccCcCCC--cCCCcCEEECCCCC-CCC------------cch-hh--CCCCEEE
Confidence            2211 11222  3445555555444 2333322  34455555555442 221            122 22  7788888


Q ss_pred             ccCCcccccccCCCccCCcc-------ceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          185 LDDLPHLKSIFWKPLPFTHL-------KKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       185 L~~~~~L~~i~~~~~~~p~L-------~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      +.+. +++.++. .  ..+|       +.|.++++ +++.+|..... ..+|+.+.
T Consensus       187 Ls~N-~L~~lp~-~--~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~-l~~L~~L~  236 (571)
T 3cvr_A          187 VSTN-LLESLPA-V--PVRNHHSEETEIFFRCREN-RITHIPENILS-LDPTCTII  236 (571)
T ss_dssp             CCSS-CCSSCCC-C--C--------CCEEEECCSS-CCCCCCGGGGG-SCTTEEEE
T ss_pred             CcCC-CCCchhh-H--HHhhhcccccceEEecCCC-cceecCHHHhc-CCCCCEEE
Confidence            8776 4666654 1  1266       88888876 56677754433 35555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.77  E-value=0.0001  Score=63.98  Aligned_cols=52  Identities=12%  Similarity=0.082  Sum_probs=21.8

Q ss_pred             CCcccEEeccCCcccccccCCCc-cCCccc-eeeeccCccCCCCCCCCccccCCceEE
Q 024866          177 FENLQSLDLDDLPHLKSIFWKPL-PFTHLK-KMAVLMCDQLRKPPLDSNSAKERKFVI  232 (261)
Q Consensus       177 ~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~-~L~i~~C~~L~~lp~~~~~~~~~l~~~  232 (261)
                      +++|++|.+.+  +++.|....+ .+++|+ .+.+.+  +++.++.+....+.+|+.+
T Consensus       249 ~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          249 KKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEE
T ss_pred             CCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEE
Confidence            44455554443  2444433222 234444 444444  4444444444434444443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.76  E-value=2.8e-06  Score=76.95  Aligned_cols=34  Identities=15%  Similarity=0.172  Sum_probs=19.0

Q ss_pred             CCCCcEEEEecCCCCCCC------CccccCCCCcEEEEecc
Q 024866          118 FRSLHRVIIGECHKLKDV------TFLVFAPNLKSLRLFDC  152 (261)
Q Consensus       118 ~~~L~~L~l~~C~~l~~l------~~l~~lp~L~~L~i~~C  152 (261)
                      .++|+.|++.+| ++.+.      ..+..+++|++|++++|
T Consensus       198 ~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  237 (461)
T 1z7x_W          198 PCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSN  237 (461)
T ss_dssp             CCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred             CCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence            346677777666 34432      11234566666666665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.69  E-value=0.00045  Score=54.19  Aligned_cols=103  Identities=20%  Similarity=0.148  Sum_probs=75.5

Q ss_pred             cCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866          116 FVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS  193 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  193 (261)
                      ..+++|+.|++.++ +++.+..  +..+++|++|+++++ .+..+..           ..+..+++|+.|++.+. +++.
T Consensus        25 ~~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-----------~~~~~l~~L~~L~l~~N-~l~~   90 (177)
T 2o6r_A           25 GIPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPD-----------GVFDKLTKLTILYLHEN-KLQS   90 (177)
T ss_dssp             TCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSS-CCCC
T ss_pred             CCCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeCh-----------hHccCCCccCEEECCCC-Cccc
Confidence            45679999999987 4666642  467899999999986 4444332           13456899999999986 4777


Q ss_pred             ccCCC-ccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          194 IFWKP-LPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       194 i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      +.... ..+++|+.|.++++ +++.+|.........|+.+.
T Consensus        91 ~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           91 LPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred             cCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEE
Confidence            76543 46899999999998 77888876544456677655

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.69  E-value=0.0004  Score=61.12  Aligned_cols=129  Identities=17%  Similarity=0.198  Sum_probs=86.3

Q ss_pred             eEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCc-CCCCCcEEEEecCCCCCCCC--cc
Q 024866           62 RSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPF-VFRSLHRVIIGECHKLKDVT--FL  138 (261)
Q Consensus        62 ~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~-~~~~L~~L~l~~C~~l~~l~--~l  138 (261)
                      +++++++ .+++.++.  .+  .++++.|++++.. +..+..+.         .. .+++|+.|+++++ ++..+.  .+
T Consensus        21 ~~l~c~~-~~l~~iP~--~~--~~~l~~L~Ls~N~-l~~l~~~~---------~~~~l~~L~~L~L~~N-~i~~i~~~~~   84 (361)
T 2xot_A           21 NILSCSK-QQLPNVPQ--SL--PSYTALLDLSHNN-LSRLRAEW---------TPTRLTNLHSLLLSHN-HLNFISSEAF   84 (361)
T ss_dssp             TEEECCS-SCCSSCCS--SC--CTTCSEEECCSSC-CCEECTTS---------SSSCCTTCCEEECCSS-CCCEECTTTT
T ss_pred             CEEEeCC-CCcCccCc--cC--CCCCCEEECCCCC-CCccChhh---------hhhcccccCEEECCCC-cCCccChhhc
Confidence            3455544 34555542  22  3468899998764 55442111         12 6899999999987 677664  35


Q ss_pred             ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCccCCC
Q 024866          139 VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCDQLRK  217 (261)
Q Consensus       139 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~~L~~  217 (261)
                      ..+++|++|+++++. ++.+..           ..+..+++|+.|++.+.. ++.+.. ....+++|+.|.++++ +++.
T Consensus        85 ~~l~~L~~L~Ls~N~-l~~~~~-----------~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~  150 (361)
T 2xot_A           85 VPVPNLRYLDLSSNH-LHTLDE-----------FLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISR  150 (361)
T ss_dssp             TTCTTCCEEECCSSC-CCEECT-----------TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCS
T ss_pred             cCCCCCCEEECCCCc-CCcCCH-----------HHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCCe
Confidence            679999999999963 554432           134568999999999865 666643 3446899999999886 4555


Q ss_pred             CCC
Q 024866          218 PPL  220 (261)
Q Consensus       218 lp~  220 (261)
                      +|.
T Consensus       151 l~~  153 (361)
T 2xot_A          151 FPV  153 (361)
T ss_dssp             CCG
T ss_pred             eCH
Confidence            554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.68  E-value=0.00025  Score=61.57  Aligned_cols=57  Identities=14%  Similarity=0.109  Sum_probs=38.2

Q ss_pred             cccCCccc-EEeccCCcccccccCCCc-cCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          174 ISPFENLQ-SLDLDDLPHLKSIFWKPL-PFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       174 ~~~~p~L~-~L~L~~~~~L~~i~~~~~-~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      +..+++|+ .+.+.+  +++.|....+ .+++|+.|.+.+ .+++.++.+....+.+|+.++
T Consensus       269 F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          269 FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred             hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence            44566787 888877  6777765433 467888887533 357777777776667777664

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.65  E-value=0.00018  Score=57.62  Aligned_cols=105  Identities=22%  Similarity=0.290  Sum_probs=54.4

Q ss_pred             ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--  137 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--  137 (261)
                      .++.|.+++. .+..++....++.+++|+.|+++++. +..+..         .....+++|+.|++++. +++.+..  
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~---------~~~~~l~~L~~L~Ls~N-~l~~~~~~~   97 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEP---------NAFEGASHIQELQLGEN-KIKEISNKM   97 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCT---------TTTTTCTTCCEEECCSC-CCCEECSSS
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCH---------hHcCCcccCCEEECCCC-cCCccCHHH
Confidence            5666666664 34444321235666677777766653 222110         11245666777777665 4554432  


Q ss_pred             cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCC
Q 024866          138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDL  188 (261)
Q Consensus       138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~  188 (261)
                      +..+++|++|+++++ .+..+..           ..+..+++|+.|++.+-
T Consensus        98 ~~~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           98 FLGLHQLKTLNLYDN-QISCVMP-----------GSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             STTCTTCCEEECCSS-CCCEECT-----------TSSTTCTTCCEEECTTC
T ss_pred             hcCCCCCCEEECCCC-cCCeeCH-----------HHhhcCCCCCEEEeCCC
Confidence            345667777777664 2332221           13344666666666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.60  E-value=1.2e-05  Score=71.02  Aligned_cols=87  Identities=15%  Similarity=0.064  Sum_probs=49.0

Q ss_pred             Eeee-ccccccccCCCcch--hhhhhcc-----cCCceEEEEEcchHH--HHHHhhCcccc-cceeEEEEcCCCCCCccc
Q 024866            8 NFHE-ASEESVLFGGGEVL--VQELLGL-----KYLEVLELTLGSYQA--LQILLSSNKLK-SCIRSLQLRLVRDTPSII   76 (261)
Q Consensus         8 ~~~~-~~~~~~~~~~~~~~--l~eL~~L-----~~L~~L~i~~~~~~~--l~~l~~~~~l~-~~L~~L~L~~c~~l~~l~   76 (261)
                      .-+| ..+..++++.....  ...+..+     ++|+.|++.......  ...+....... .+|+.|+++++. +...+
T Consensus        47 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~  125 (362)
T 3goz_A           47 ANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS  125 (362)
T ss_dssp             HTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred             HhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH
Confidence            3445 67777777764332  4445444     888888888543221  22222221111 478999999875 34332


Q ss_pred             cccc----ccc-cCCCCeEEEeccC
Q 024866           77 DATA----FAD-LNHLNELYIFKGI   96 (261)
Q Consensus        77 ~~~~----l~~-l~~L~~L~i~~c~   96 (261)
                      . ..    +.. ..+|++|++++|.
T Consensus       126 ~-~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A          126 S-SEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             H-HHHHHHHTTSCTTCCEEECTTSC
T ss_pred             H-HHHHHHHHhCCCceeEEEccCCc
Confidence            2 22    233 2588888888764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.59  E-value=3.8e-06  Score=67.76  Aligned_cols=34  Identities=15%  Similarity=0.128  Sum_probs=17.9

Q ss_pred             CCCCcEEEEecCCCCCCCCccccCCCCcEEEEecc
Q 024866          118 FRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDC  152 (261)
Q Consensus       118 ~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C  152 (261)
                      +++|+.|+++++ ++..++.+..+++|++|+++++
T Consensus        92 ~~~L~~L~L~~N-~l~~l~~~~~l~~L~~L~l~~N  125 (198)
T 1ds9_A           92 ADTLEELWISYN-QIASLSGIEKLVNLRVLYMSNN  125 (198)
T ss_dssp             HHHCSEEEEEEE-ECCCHHHHHHHHHSSEEEESEE
T ss_pred             CCcCCEEECcCC-cCCcCCccccCCCCCEEECCCC
Confidence            355555655555 4444433444555555555554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.59  E-value=0.00035  Score=56.06  Aligned_cols=79  Identities=14%  Similarity=0.101  Sum_probs=39.2

Q ss_pred             ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--  137 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--  137 (261)
                      .++.|++++. .+..++  ..+..+++|+.|+++++. +..+..         .....+++|+.|++++. +++.+..  
T Consensus        32 ~l~~L~L~~n-~i~~ip--~~~~~l~~L~~L~Ls~N~-i~~i~~---------~~f~~l~~L~~L~Ls~N-~l~~i~~~~   97 (193)
T 2wfh_A           32 DVTELYLDGN-QFTLVP--KELSNYKHLTLIDLSNNR-ISTLSN---------QSFSNMTQLLTLILSYN-RLRCIPPRT   97 (193)
T ss_dssp             TCCEEECCSS-CCCSCC--GGGGGCTTCCEEECCSSC-CCCCCT---------TTTTTCTTCCEEECCSS-CCCBCCTTT
T ss_pred             CCCEEECCCC-cCchhH--HHhhcccCCCEEECCCCc-CCEeCH---------hHccCCCCCCEEECCCC-ccCEeCHHH
Confidence            4566666653 333332  345566666666665543 222110         01234556666666655 3544432  


Q ss_pred             cccCCCCcEEEEecc
Q 024866          138 LVFAPNLKSLRLFDC  152 (261)
Q Consensus       138 l~~lp~L~~L~i~~C  152 (261)
                      +..+++|++|+++++
T Consensus        98 f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           98 FDGLKSLRLLSLHGN  112 (193)
T ss_dssp             TTTCTTCCEEECCSS
T ss_pred             hCCCCCCCEEECCCC
Confidence            344566666666653

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.45  E-value=0.00077  Score=53.97  Aligned_cols=120  Identities=12%  Similarity=0.106  Sum_probs=77.0

Q ss_pred             EEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--ccc
Q 024866           63 SLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVF  140 (261)
Q Consensus        63 ~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~  140 (261)
                      .+.+++ .+++.++.  .+  .++|+.|++++.. +..+.          .....+++|+.|+++++ +++.+..  +..
T Consensus        14 ~l~~~~-~~l~~ip~--~~--~~~l~~L~L~~n~-i~~ip----------~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~   76 (193)
T 2wfh_A           14 VVRCSN-KGLKVLPK--GI--PRDVTELYLDGNQ-FTLVP----------KELSNYKHLTLIDLSNN-RISTLSNQSFSN   76 (193)
T ss_dssp             EEECTT-SCCSSCCS--CC--CTTCCEEECCSSC-CCSCC----------GGGGGCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             EEEcCC-CCCCcCCC--CC--CCCCCEEECCCCc-CchhH----------HHhhcccCCCEEECCCC-cCCEeCHhHccC
Confidence            445444 24455542  22  3578888888754 33221          12356889999999887 5776642  567


Q ss_pred             CCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC-CccCCccceeeeccC
Q 024866          141 APNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK-PLPFTHLKKMAVLMC  212 (261)
Q Consensus       141 lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~-~~~~p~L~~L~i~~C  212 (261)
                      +++|++|+++++. +..+..           ..+..+++|+.|++.+. +++.+... ...+++|+.|.+.+.
T Consensus        77 l~~L~~L~Ls~N~-l~~i~~-----------~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A           77 MTQLLTLILSYNR-LRCIPP-----------RTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CTTCCEEECCSSC-CCBCCT-----------TTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCCCEEECCCCc-cCEeCH-----------HHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCC
Confidence            8999999998863 444332           13456889999999885 47777654 335788888877654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.39  E-value=2.6e-06  Score=68.71  Aligned_cols=125  Identities=13%  Similarity=0.107  Sum_probs=82.0

Q ss_pred             ceeEEEEcCC-CCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc-
Q 024866           60 CIRSLQLRLV-RDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF-  137 (261)
Q Consensus        60 ~L~~L~L~~c-~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~-  137 (261)
                      .++...+.+. +.++.++  ..++.+++|+.|+++++. +..+           |....+++|+.|++.++ +++.++. 
T Consensus        24 ~l~~~~l~~~~~~l~~l~--~~~~~l~~L~~L~ls~n~-l~~l-----------~~~~~l~~L~~L~l~~n-~l~~l~~~   88 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMD--ATLSTLKACKHLALSTNN-IEKI-----------SSLSGMENLRILSLGRN-LIKKIENL   88 (198)
T ss_dssp             TCSEEECCBCCTTCCCCH--HHHHHTTTCSEEECSEEE-ESCC-----------CCHHHHTTCCEEEEEEE-EECSCSSH
T ss_pred             chheeEeccccCcHhhhh--HHHhcCCCCCEEECCCCC-Cccc-----------cccccCCCCCEEECCCC-Ccccccch
Confidence            3556666543 2344443  367888899999988764 3322           23356789999999887 5666643 


Q ss_pred             cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC--CCccCCccceeeeccCcc
Q 024866          138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW--KPLPFTHLKKMAVLMCDQ  214 (261)
Q Consensus       138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~p~L~~L~i~~C~~  214 (261)
                      ...+++|++|+++++ .+..+.             .+..+++|+.|++.+.. ++.+..  ....+++|+.|.+.+++-
T Consensus        89 ~~~~~~L~~L~L~~N-~l~~l~-------------~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           89 DAVADTLEELWISYN-QIASLS-------------GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHHHHCSEEEEEEE-ECCCHH-------------HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             hhcCCcCCEEECcCC-cCCcCC-------------ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCcc
Confidence            345689999999987 444432             23457888888887753 554432  234578888888888754

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.37  E-value=0.00039  Score=65.28  Aligned_cols=91  Identities=15%  Similarity=0.086  Sum_probs=65.8

Q ss_pred             CCCcCCCCCcEEEEecCCCCCCCC-ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccc
Q 024866          113 REPFVFRSLHRVIIGECHKLKDVT-FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHL  191 (261)
Q Consensus       113 p~~~~~~~L~~L~l~~C~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L  191 (261)
                      |..+.+++|+.|+++++ +++.++ .++.+++|++|+++++ .++.+.             .+..+++|+.|++++. ++
T Consensus       457 p~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-------------~l~~l~~L~~L~Ls~N-~l  520 (567)
T 1dce_A          457 CHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-------------GVANLPRLQELLLCNN-RL  520 (567)
T ss_dssp             CCGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-------------GGTTCSSCCEEECCSS-CC
T ss_pred             cCccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-------------ccCCCCCCcEEECCCC-CC
Confidence            44577889999999887 576663 4567899999999886 343321             3456889999999886 47


Q ss_pred             ccc--cCCCccCCccceeeeccCccCCCCCC
Q 024866          192 KSI--FWKPLPFTHLKKMAVLMCDQLRKPPL  220 (261)
Q Consensus       192 ~~i--~~~~~~~p~L~~L~i~~C~~L~~lp~  220 (261)
                      +.+  +.....+++|+.|.+++++ ++.+|.
T Consensus       521 ~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~  550 (567)
T 1dce_A          521 QQSAAIQPLVSCPRLVLLNLQGNS-LCQEEG  550 (567)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSG-GGGSSS
T ss_pred             CCCCCcHHHhcCCCCCEEEecCCc-CCCCcc
Confidence            776  4455678999999998875 555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.31  E-value=0.0013  Score=52.54  Aligned_cols=124  Identities=15%  Similarity=0.119  Sum_probs=81.9

Q ss_pred             eEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccc
Q 024866           62 RSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLV  139 (261)
Q Consensus        62 ~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~  139 (261)
                      +++++++. +++.++.  .+.  .+|+.|++++.. +..+..+        ...+.+++|+.|+++++ +++.+.  .+.
T Consensus        11 ~~l~~s~~-~l~~ip~--~~~--~~l~~L~l~~n~-i~~~~~~--------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~   75 (192)
T 1w8a_A           11 TTVDCTGR-GLKEIPR--DIP--LHTTELLLNDNE-LGRISSD--------GLFGRLPHLVKLELKRN-QLTGIEPNAFE   75 (192)
T ss_dssp             TEEECTTS-CCSSCCS--CCC--TTCSEEECCSCC-CCSBCCS--------CSGGGCTTCCEEECCSS-CCCCBCTTTTT
T ss_pred             CEEEcCCC-CcCcCcc--CCC--CCCCEEECCCCc-CCccCCc--------cccccCCCCCEEECCCC-CCCCcCHhHcC
Confidence            45666653 4555542  222  388899888764 3322110        01357899999999987 576652  356


Q ss_pred             cCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccCc
Q 024866          140 FAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMCD  213 (261)
Q Consensus       140 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C~  213 (261)
                      .+++|++|+++++ .++.+..           ..+..+++|+.|++.+.. ++.+.. ....+++|+.|.+++.+
T Consensus        76 ~l~~L~~L~Ls~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           76 GASHIQELQLGEN-KIKEISN-----------KMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TCTTCCEEECCSC-CCCEECS-----------SSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCC
T ss_pred             CcccCCEEECCCC-cCCccCH-----------HHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCC
Confidence            7899999999986 3444332           134568999999999864 666643 34468899999887754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.22  E-value=0.0016  Score=51.19  Aligned_cols=36  Identities=19%  Similarity=0.161  Sum_probs=19.4

Q ss_pred             cCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecc
Q 024866          116 FVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDC  152 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C  152 (261)
                      ..+++|+.|++++. +++.++.  ...+++|++|++++.
T Consensus        54 ~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           54 DHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence            34556666666555 4555432  234566666666553

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.19  E-value=0.00065  Score=65.63  Aligned_cols=102  Identities=16%  Similarity=0.104  Sum_probs=76.2

Q ss_pred             CcCCCCCcEEEEecCCCCCCCC-ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866          115 PFVFRSLHRVIIGECHKLKDVT-FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS  193 (261)
Q Consensus       115 ~~~~~~L~~L~l~~C~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  193 (261)
                      ...+++|+.|+++++ ++..++ .+..+++|++|+++++ .+..+.            ..+..+++|+.|+|++.. |+.
T Consensus       220 ~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp------------~~~~~l~~L~~L~Ls~N~-l~~  284 (727)
T 4b8c_D          220 KYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGN-SLTELP------------AEIKNLSNLRVLDLSHNR-LTS  284 (727)
T ss_dssp             --CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTS-CCSCCC------------GGGGGGTTCCEEECTTSC-CSS
T ss_pred             hccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCC-cCcccC------------hhhhCCCCCCEEeCcCCc-CCc
Confidence            356789999999988 466664 3457899999999987 344332            245678999999999976 778


Q ss_pred             ccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          194 IFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       194 i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      ++.....+++|++|.++++ +++.+|.. .....+|+.+.
T Consensus       285 lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~  322 (727)
T 4b8c_D          285 LPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLG  322 (727)
T ss_dssp             CCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEE
T ss_pred             cChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEe
Confidence            8777778999999999998 67888875 33345666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.03  E-value=0.0031  Score=49.26  Aligned_cols=99  Identities=15%  Similarity=0.164  Sum_probs=50.3

Q ss_pred             eEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cc
Q 024866           62 RSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LV  139 (261)
Q Consensus        62 ~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~  139 (261)
                      +.+++++ .+++.++.  .+  .++|+.|++++.. +..+..         .....+++|+.|++++. +++.++.  ..
T Consensus        12 ~~l~~s~-n~l~~ip~--~~--~~~l~~L~L~~N~-i~~~~~---------~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~   75 (170)
T 3g39_A           12 TTVDCSG-KSLASVPT--GI--PTTTQVLYLYDNQ-ITKLEP---------GVFDRLTQLTRLDLDNN-QLTVLPAGVFD   75 (170)
T ss_dssp             TEEECTT-SCCSSCCS--CC--CTTCSEEECCSSC-CCCCCT---------TTTTTCTTCSEEECCSS-CCCCCCTTTTT
T ss_pred             CEEEeCC-CCcCccCc--cC--CCCCcEEEcCCCc-CCccCh---------hhhcCcccCCEEECCCC-CcCccChhhcc
Confidence            3455554 24445532  22  2566666666543 222210         11245667777777665 4555532  24


Q ss_pred             cCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCC
Q 024866          140 FAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDL  188 (261)
Q Consensus       140 ~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~  188 (261)
                      .+++|++|++++. .++.+..           ..+..+++|+.|++.+-
T Consensus        76 ~l~~L~~L~L~~N-~l~~~~~-----------~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           76 KLTQLTQLSLNDN-QLKSIPR-----------GAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             TCTTCCEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSS
T ss_pred             CCCCCCEEECCCC-ccCEeCH-----------HHhcCCCCCCEEEeCCC
Confidence            5677777777664 3333221           12344666777776653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.96  E-value=0.0023  Score=55.55  Aligned_cols=100  Identities=25%  Similarity=0.283  Sum_probs=68.3

Q ss_pred             EEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccccC
Q 024866           64 LQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLVFA  141 (261)
Q Consensus        64 L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~~l  141 (261)
                      ++.++..++..++  . +..+.+|+.|++++...+..+..+         ..+.+++|+.|+|++. +++.+.  .+..+
T Consensus        13 v~~~~~n~l~~ip--~-l~~~~~L~~L~l~~~n~l~~~~~~---------~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l   79 (347)
T 2ifg_A           13 LRCTRDGALDSLH--H-LPGAENLTELYIENQQHLQHLELR---------DLRGLGELRNLTIVKS-GLRFVAPDAFHFT   79 (347)
T ss_dssp             EECCSSCCCTTTT--T-SCSCSCCSEEECCSCSSCCEECGG---------GSCSCCCCSEEECCSS-CCCEECTTGGGSC
T ss_pred             EEcCCCCCCCccC--C-CCCCCCeeEEEccCCCCCCCcChh---------HhccccCCCEEECCCC-ccceeCHHHhcCC
Confidence            4444433566663  3 888899999999987777766321         1357899999999987 677764  34679


Q ss_pred             CCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCc
Q 024866          142 PNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLP  189 (261)
Q Consensus       142 p~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  189 (261)
                      ++|++|++++. .+..+...           .+..+ .|+.|++.+-+
T Consensus        80 ~~L~~L~l~~N-~l~~~~~~-----------~~~~~-~L~~l~l~~N~  114 (347)
T 2ifg_A           80 PRLSRLNLSFN-ALESLSWK-----------TVQGL-SLQELVLSGNP  114 (347)
T ss_dssp             SCCCEEECCSS-CCSCCCST-----------TTCSC-CCCEEECCSSC
T ss_pred             cCCCEEeCCCC-ccceeCHH-----------HcccC-CceEEEeeCCC
Confidence            99999999984 55544321           11223 39999997644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.96  E-value=0.0016  Score=51.16  Aligned_cols=81  Identities=16%  Similarity=0.175  Sum_probs=60.2

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCC-CcCCCCCcEEEEecCCCCCCCCc
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRRE-PFVFRSLHRVIIGECHKLKDVTF  137 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~-~~~~~~L~~L~l~~C~~l~~l~~  137 (261)
                      .+|+.|++++. .+..++. ..+..+++|+.|++++.. +..+.          +. ...+++|+.|++++. +++.++.
T Consensus        33 ~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~i~----------~~~~~~l~~L~~L~L~~N-~l~~l~~   98 (174)
T 2r9u_A           33 TDKQRLWLNNN-QITKLEP-GVFDHLVNLQQLYFNSNK-LTAIP----------TGVFDKLTQLTQLDLNDN-HLKSIPR   98 (174)
T ss_dssp             TTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC-CCCCC----------TTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             CCCcEEEeCCC-CccccCH-HHhcCCcCCCEEECCCCC-CCccC----------hhHhCCcchhhEEECCCC-ccceeCH
Confidence            57899999985 4566643 568899999999999863 54331          11 256899999999987 6777643


Q ss_pred             --cccCCCCcEEEEeccc
Q 024866          138 --LVFAPNLKSLRLFDCG  153 (261)
Q Consensus       138 --l~~lp~L~~L~i~~C~  153 (261)
                        +..+++|++|++++..
T Consensus        99 ~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           99 GAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTTTTCTTCSEEECCSSC
T ss_pred             HHhccccCCCEEEeCCCC
Confidence              5678999999998753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.81  E-value=0.0017  Score=57.56  Aligned_cols=145  Identities=16%  Similarity=0.033  Sum_probs=83.0

Q ss_pred             HHHHhhCcccccceeEEEEcCCCC-CCcc------cccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCC
Q 024866           48 LQILLSSNKLKSCIRSLQLRLVRD-TPSI------IDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRS  120 (261)
Q Consensus        48 l~~l~~~~~l~~~L~~L~L~~c~~-l~~l------~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~  120 (261)
                      ++.+..+...+++|+.|.|.+... -..+      .+...+..+++|+.|.++++..+. +           +. ...++
T Consensus       128 ~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l-----------~~-~~~~~  194 (362)
T 2ra8_A          128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-I-----------GK-KPRPN  194 (362)
T ss_dssp             HHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-C-----------CS-CBCTT
T ss_pred             HHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-e-----------cc-ccCCC
Confidence            455665555566899998865421 0001      122345678899999998874332 1           21 23789


Q ss_pred             CcEEEEecCCCCCCCC--cc--ccCCCCcEEEEecccccccccccccccccCccc--CCcccCCcccEEeccCCcccc--
Q 024866          121 LHRVIIGECHKLKDVT--FL--VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMM--GHISPFENLQSLDLDDLPHLK--  192 (261)
Q Consensus       121 L~~L~l~~C~~l~~l~--~l--~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~--~~~~~~p~L~~L~L~~~~~L~--  192 (261)
                      |+.|.+..|. +..-.  -+  ..+|+|++|+++.+.+..  .. ....  ..+.  .....||+|+.|.+.+|.--.  
T Consensus       195 L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~--~~-~~~~--~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~  268 (362)
T 2ra8_A          195 LKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDY--GF-DGDM--NVFRPLFSKDRFPNLKWLGIVDAEEQNVV  268 (362)
T ss_dssp             CSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGG--TC-CSCG--GGTGGGSCTTTCTTCCEEEEESCTTHHHH
T ss_pred             CcEEEEecCC-CChHHHHHHHHccCCCCcEEEEecccccc--cc-chhH--HHHHHHHhcCCCCCcCEEeCCCCCCchHH
Confidence            9999998763 43211  11  268999999987432210  00 0000  0000  011358999999998876321  


Q ss_pred             --cccCCCccCCccceeeeccC
Q 024866          193 --SIFWKPLPFTHLKKMAVLMC  212 (261)
Q Consensus       193 --~i~~~~~~~p~L~~L~i~~C  212 (261)
                        .+. ....+|+|+.|+++.+
T Consensus       269 ~~~la-~a~~~~~L~~LdLs~n  289 (362)
T 2ra8_A          269 VEMFL-ESDILPQLETMDISAG  289 (362)
T ss_dssp             HHHHH-HCSSGGGCSEEECCSS
T ss_pred             HHHHH-hCccCCCCCEEECCCC
Confidence              111 1235799999999765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.75  E-value=0.0072  Score=52.37  Aligned_cols=87  Identities=16%  Similarity=0.175  Sum_probs=61.6

Q ss_pred             CCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcc
Q 024866          113 REPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPH  190 (261)
Q Consensus       113 p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~  190 (261)
                      |..+.+++|+.|+|++...+..+..  +..+++|++|++++. .++.+..           ..+..+++|+.|+|++- +
T Consensus        25 p~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~-----------~~~~~l~~L~~L~l~~N-~   91 (347)
T 2ifg_A           25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAP-----------DAFHFTPRLSRLNLSFN-A   91 (347)
T ss_dssp             TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECT-----------TGGGSCSCCCEEECCSS-C
T ss_pred             CCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCH-----------HHhcCCcCCCEEeCCCC-c
Confidence            3356678899999987667877653  567899999999986 5665543           13456889999999884 5


Q ss_pred             cccccCCCccCCccceeeeccC
Q 024866          191 LKSIFWKPLPFTHLKKMAVLMC  212 (261)
Q Consensus       191 L~~i~~~~~~~p~L~~L~i~~C  212 (261)
                      |..++...+....|+.|.+.+.
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGN  113 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSS
T ss_pred             cceeCHHHcccCCceEEEeeCC
Confidence            7777765444344888877654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.72  E-value=0.012  Score=45.84  Aligned_cols=84  Identities=17%  Similarity=0.146  Sum_probs=61.6

Q ss_pred             cCCCCCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866          116 FVFRSLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS  193 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  193 (261)
                      ..+++|+.|++++. +++.+.  .+..+++|++|++++. .++.+..           ..+..+++|+.|++.+. +++.
T Consensus        27 ~~~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~-----------~~f~~l~~L~~L~L~~N-~l~~   92 (170)
T 3g39_A           27 GIPTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPA-----------GVFDKLTQLTQLSLNDN-QLKS   92 (170)
T ss_dssp             CCCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSS-CCCC
T ss_pred             cCCCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccCh-----------hhccCCCCCCEEECCCC-ccCE
Confidence            34689999999887 677763  2567899999999986 4554432           13456899999999886 4787


Q ss_pred             ccCC-CccCCccceeeeccCc
Q 024866          194 IFWK-PLPFTHLKKMAVLMCD  213 (261)
Q Consensus       194 i~~~-~~~~p~L~~L~i~~C~  213 (261)
                      +... ...+++|+.|.+++-+
T Consensus        93 ~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           93 IPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCTTTTTTCTTCCEEECCSSC
T ss_pred             eCHHHhcCCCCCCEEEeCCCC
Confidence            7764 4468899999887653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.12  E-value=0.00075  Score=59.91  Aligned_cols=138  Identities=9%  Similarity=-0.012  Sum_probs=72.5

Q ss_pred             ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC---
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT---  136 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~---  136 (261)
                      +|+.|+|++|. +...........+++|+.|++++|. +.........  ..+  ....++|+.|++++| ++.+..   
T Consensus       102 ~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~--~~L--~~~~~~L~~L~Ls~n-~l~~~~~~~  174 (372)
T 3un9_A          102 ALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLR--DLL--LHDQCQITTLRLSNN-PLTAAGVAV  174 (372)
T ss_dssp             CEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHH--HHH--HSTTCCCCEEECCSS-CCHHHHHHH
T ss_pred             CceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHH--HHH--HhcCCccceeeCCCC-CCChHHHHH
Confidence            57777777663 2222111112345567777777663 2110000000  000  013468888888888 454321   


Q ss_pred             ---ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC-----CCccCCccceee
Q 024866          137 ---FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-----KPLPFTHLKKMA  208 (261)
Q Consensus       137 ---~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-----~~~~~p~L~~L~  208 (261)
                         .+...++|++|++++|. +.+....       .+...+...++|++|++.++. +.....     .....++|++|+
T Consensus       175 l~~~L~~~~~L~~L~Ls~N~-l~~~g~~-------~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~  245 (372)
T 3un9_A          175 LMEGLAGNTSVTHLSLLHTG-LGDEGLE-------LLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLH  245 (372)
T ss_dssp             HHHHHHTCSSCCEEECTTSS-CHHHHHH-------HHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEE
T ss_pred             HHHHHhcCCCcCEEeCCCCC-CCcHHHH-------HHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEe
Confidence               12457888888888874 3321100       011133446789999998874 443211     112358899999


Q ss_pred             eccCc
Q 024866          209 VLMCD  213 (261)
Q Consensus       209 i~~C~  213 (261)
                      +++|+
T Consensus       246 Ls~N~  250 (372)
T 3un9_A          246 LYFNE  250 (372)
T ss_dssp             CTTSS
T ss_pred             ccCCC
Confidence            98884

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.95  E-value=0.14  Score=45.70  Aligned_cols=60  Identities=12%  Similarity=-0.018  Sum_probs=29.5

Q ss_pred             CCcccEEeccCCcccccccCCCc-cCCccceeeeccCccCCCCCCCCcccc-CCceEEEcchhhhh
Q 024866          177 FENLQSLDLDDLPHLKSIFWKPL-PFTHLKKMAVLMCDQLRKPPLDSNSAK-ERKFVIRGYTGWWN  240 (261)
Q Consensus       177 ~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~i~~C~~L~~lp~~~~~~~-~~l~~~~~~~~ww~  240 (261)
                      +++|+.+.|..  +++.+....+ .+ +|+.|.+.+. .+..++.+..... ..+..++-+...-+
T Consensus       322 c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          322 NRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             CCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHHHHH
Confidence            35555555532  3555544333 24 6777776654 3344444433322 45556665555433

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.55  E-value=0.43  Score=42.38  Aligned_cols=143  Identities=9%  Similarity=0.114  Sum_probs=88.1

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--  136 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--  136 (261)
                      ..|+.+.+.+  +++.++. .++..+.+|+.+.+.+  +++.|.....         .. .+|+.+.+.+  +++.+.  
T Consensus       203 ~~L~~l~lp~--~l~~I~~-~aF~~~~~L~~l~l~~--~l~~I~~~aF---------~~-~~L~~i~lp~--~i~~I~~~  265 (401)
T 4fdw_A          203 AGIEEVLLPV--TLKEIGS-QAFLKTSQLKTIEIPE--NVSTIGQEAF---------RE-SGITTVKLPN--GVTNIASR  265 (401)
T ss_dssp             CCCSEEECCT--TCCEECT-TTTTTCTTCCCEECCT--TCCEECTTTT---------TT-CCCSEEEEET--TCCEECTT
T ss_pred             cccCEEEeCC--chheehh-hHhhCCCCCCEEecCC--CccCcccccc---------cc-CCccEEEeCC--CccEEChh
Confidence            3577777763  4666654 5677788888888764  4555532111         12 5888888854  355442  


Q ss_pred             ccccCCCCcEEEEeccccc----ccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCc-cCCccceeeecc
Q 024866          137 FLVFAPNLKSLRLFDCGAM----EEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPL-PFTHLKKMAVLM  211 (261)
Q Consensus       137 ~l~~lp~L~~L~i~~C~~L----~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~i~~  211 (261)
                      ....+++|+++.+.+...-    +.+.           ...+..+++|+.+.+.  .+++.+....+ .+++|+.+.+.+
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~-----------~~aF~~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIH-----------PYCLEGCPKLARFEIP--ESIRILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEEC-----------TTTTTTCTTCCEECCC--TTCCEECTTTTTTCCSCCEEEECT
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEEC-----------HHHhhCCccCCeEEeC--CceEEEhhhhhcCCCCccEEEECc
Confidence            2346889999988764211    0111           1144557788888887  35777766544 368888888843


Q ss_pred             CccCCCCCCCCccccCCceEEEc
Q 024866          212 CDQLRKPPLDSNSAKERKFVIRG  234 (261)
Q Consensus       212 C~~L~~lp~~~~~~~~~l~~~~~  234 (261)
                        +++.++.+....+ .|+.+..
T Consensus       333 --~l~~I~~~aF~~~-~L~~l~l  352 (401)
T 4fdw_A          333 --NVTQINFSAFNNT-GIKEVKV  352 (401)
T ss_dssp             --TCCEECTTSSSSS-CCCEEEE
T ss_pred             --cccEEcHHhCCCC-CCCEEEE
Confidence              4666766666555 6666553

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=94.62  E-value=0.002  Score=57.18  Aligned_cols=159  Identities=16%  Similarity=0.070  Sum_probs=88.3

Q ss_pred             ccccccccCCCc--chhhhhhcc-----cCCceEEEEEcch--HHHHHHhhCcccccceeEEEEcCCCCCCcccc---cc
Q 024866           12 ASEESVLFGGGE--VLVQELLGL-----KYLEVLELTLGSY--QALQILLSSNKLKSCIRSLQLRLVRDTPSIID---AT   79 (261)
Q Consensus        12 ~~~~~~~~~~~~--~~l~eL~~L-----~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~---~~   79 (261)
                      ..+..++++...  .....+...     .+|+.|++.....  .....+..   .+.+|+.|+|++| .+...+.   ..
T Consensus        73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~---~L~~L~~L~Ls~n-~l~~~~~~~L~~  148 (372)
T 3un9_A           73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP---VFLRARKLGLQLN-SLGPEACKDLRD  148 (372)
T ss_dssp             TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHH---HHHTEEEEECCSS-CCCHHHHHHHHH
T ss_pred             hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHH---HHHhccHhhcCCC-CCCHHHHHHHHH
Confidence            344555555432  223333332     5788888775432  12233222   2347999999998 4443322   01


Q ss_pred             cc-cccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC------CccccCCCCcEEEEecc
Q 024866           80 AF-ADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV------TFLVFAPNLKSLRLFDC  152 (261)
Q Consensus        80 ~l-~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l------~~l~~lp~L~~L~i~~C  152 (261)
                      .+ ...++|+.|++++|. +........     .......++|++|++++|. +.+.      ..+...++|++|++++|
T Consensus       149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l-----~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N  221 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNP-LTAAGVAVL-----MEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN  221 (372)
T ss_dssp             HHHSTTCCCCEEECCSSC-CHHHHHHHH-----HHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred             HHHhcCCccceeeCCCCC-CChHHHHHH-----HHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence            12 245789999999985 321110000     0001346789999999884 5542      12345789999999998


Q ss_pred             cccccccccccccccCcccCCcccCCcccEEeccCCc
Q 024866          153 GAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLP  189 (261)
Q Consensus       153 ~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  189 (261)
                      . +.+....       .+...+...++|++|+|.+++
T Consensus       222 ~-i~~~g~~-------~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          222 G-AGDTAAL-------ALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             C-CCHHHHH-------HHHHHHHHCSSCCEEECTTSS
T ss_pred             C-CCHHHHH-------HHHHHHHhCCCCCEEeccCCC
Confidence            4 3322110       011123356889999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=89.17  E-value=0.46  Score=39.94  Aligned_cols=61  Identities=23%  Similarity=0.210  Sum_probs=35.4

Q ss_pred             cCCCCCcEEEEecCCCCCCCCcc----ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCc
Q 024866          116 FVFRSLHRVIIGECHKLKDVTFL----VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLP  189 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~~l----~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  189 (261)
                      ..+++|+.|++++. ++..+..+    ..+|+|+.|++++. .+..+....          .+..+ +|++|.+.+-|
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~----------~l~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELD----------KIKGL-KLEELWLDGNS  231 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGG----------GGTTS-CCSEEECTTST
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhh----------hcccC-CcceEEccCCc
Confidence            35677888888765 56655322    36788888888763 343321100          11123 77788887766

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=89.02  E-value=3.8  Score=35.69  Aligned_cols=55  Identities=18%  Similarity=0.083  Sum_probs=30.0

Q ss_pred             CCcccEEeccCCcccccccCCCc-cCCccceeeeccCccCCCCCCCCccccCCceEEEcc
Q 024866          177 FENLQSLDLDDLPHLKSIFWKPL-PFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIRGY  235 (261)
Q Consensus       177 ~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~~  235 (261)
                      ..+|+++.+..  +++.|....+ .+.+|+.+.+..  +++.++.+....+.+|+.+.-+
T Consensus       319 c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          319 CTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             CTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEE
T ss_pred             CCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEEC
Confidence            34455555431  2444443322 346666666542  2556666666666778887755

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=87.08  E-value=0.072  Score=41.97  Aligned_cols=12  Identities=8%  Similarity=-0.094  Sum_probs=6.6

Q ss_pred             CCcccEEeccCC
Q 024866          177 FENLQSLDLDDL  188 (261)
Q Consensus       177 ~p~L~~L~L~~~  188 (261)
                      .+.|++|++.++
T Consensus       150 n~~L~~L~L~~n  161 (185)
T 1io0_A          150 NTTLLKFGYHFT  161 (185)
T ss_dssp             CSSCCEEECCCS
T ss_pred             CCCcCEEeccCC
Confidence            355666666544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=85.48  E-value=3.7  Score=35.78  Aligned_cols=52  Identities=19%  Similarity=0.234  Sum_probs=21.5

Q ss_pred             CCcccEEeccCCcccccccCCCc-cCCccceeeeccCccCCCCCCCCccccCCceEE
Q 024866          177 FENLQSLDLDDLPHLKSIFWKPL-PFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVI  232 (261)
Q Consensus       177 ~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  232 (261)
                      ..+|+++.|..  +++.|....+ .+.+|+.+.+-  .+++.++.+....+.+|+.+
T Consensus       310 c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip--~sv~~I~~~aF~~C~~L~~i  362 (394)
T 4gt6_A          310 CISLKSIDIPE--GITQILDDAFAGCEQLERIAIP--SSVTKIPESAFSNCTALNNI  362 (394)
T ss_dssp             CTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEC--TTCCBCCGGGGTTCTTCCEE
T ss_pred             CCCcCEEEeCC--cccEehHhHhhCCCCCCEEEEC--cccCEEhHhHhhCCCCCCEE
Confidence            34455555432  2444433322 23455555542  12444444433334444443

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=82.52  E-value=0.48  Score=39.83  Aligned_cols=62  Identities=18%  Similarity=0.065  Sum_probs=40.5

Q ss_pred             cccCCCCeEEEeccCCcceEecccccccccCCC-CcCCCCCcEEEEecCCCCCCCCccccCC--CCcEEEEeccc
Q 024866           82 ADLNHLNELYIFKGIELEELKIDYTEIVRKRRE-PFVFRSLHRVIIGECHKLKDVTFLVFAP--NLKSLRLFDCG  153 (261)
Q Consensus        82 ~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~-~~~~~~L~~L~l~~C~~l~~l~~l~~lp--~L~~L~i~~C~  153 (261)
                      ..+++|+.|++++.. +..+.        .++. ...+++|+.|++++- +++++..+..+.  +|++|++.+.+
T Consensus       167 ~~l~~L~~L~Ls~N~-l~~l~--------~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          167 ENIPELLSLNLSNNR-LYRLD--------DMSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HHCTTCCEEECTTSC-CCCCG--------GGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTST
T ss_pred             hhCCCCCEEECCCCC-CCCCc--------cchhHHhhCCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCc
Confidence            357788888887643 33221        1111 246899999999875 677654444444  89999999865

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=80.96  E-value=22  Score=30.29  Aligned_cols=32  Identities=22%  Similarity=0.211  Sum_probs=15.3

Q ss_pred             cCCcccEEeccCCcccccccCCCc-cCCccceeee
Q 024866          176 PFENLQSLDLDDLPHLKSIFWKPL-PFTHLKKMAV  209 (261)
Q Consensus       176 ~~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~i  209 (261)
                      ...+|+++.|..  +++.|....+ .+.+|+.+.+
T Consensus       308 ~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          308 DCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred             CCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence            345666666632  3555543322 2345555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	261
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.15
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.08
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.03
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.03
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.0
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.87
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.83
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.79
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.57
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.54
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.41
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.36
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.35
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.31
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.24
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.22
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.16
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.14
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.09
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.07
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.97
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.88
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.51
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.46
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.44
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.44
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.23
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.56
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	95.46
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.08
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	93.51
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	93.23
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	88.35
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	81.4

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.5e-12  Score=107.96  Aligned_cols=179  Identities=17%  Similarity=0.108  Sum_probs=107.9

Q ss_pred             ccccccccCCC--cchh-hhhhcccCCceEEEEEcch--HHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCC
Q 024866           12 ASEESVLFGGG--EVLV-QELLGLKYLEVLELTLGSY--QALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNH   86 (261)
Q Consensus        12 ~~~~~~~~~~~--~~~l-~eL~~L~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~   86 (261)
                      ..+..|++...  ...+ .-++++++|+.|++.....  ..+..+..    .++|++|++++|.+++...+......+++
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~----~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK----NSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT----CTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhc----CCCCcCccccccccccccccchhhHHHHh
Confidence            34556665542  2323 3456678888888775432  22333332    34788999999888765543223456788


Q ss_pred             CCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCC-CCCCC---CccccCCCCcEEEEecccccccccccc
Q 024866           87 LNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECH-KLKDV---TFLVFAPNLKSLRLFDCGAMEEIISVG  162 (261)
Q Consensus        87 L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~-~l~~l---~~l~~lp~L~~L~i~~C~~L~~i~~~~  162 (261)
                      |++|++++|..+..-.+....       ....++|+.|++.+|. .+.+-   .....+|+|++|++++|..+++...  
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~-------~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~--  193 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAV-------AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF--  193 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHH-------HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG--
T ss_pred             ccccccccccccccccchhhh-------cccccccchhhhcccccccccccccccccccccccccccccccCCCchhh--
Confidence            999999888765321110000       0234678888888764 23321   1124578888888888877654221  


Q ss_pred             cccccCcccCCcccCCcccEEeccCCcccccccC-CCccCCccceeeeccC
Q 024866          163 KIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW-KPLPFTHLKKMAVLMC  212 (261)
Q Consensus       163 ~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~-~~~~~p~L~~L~i~~C  212 (261)
                               ..+..+++|++|++.+|.++..-.. ....+|+|+.|++.+|
T Consensus       194 ---------~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         194 ---------QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ---------GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ---------hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence                     1334578888888888887754322 2335788888888887

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=2.7e-10  Score=92.55  Aligned_cols=180  Identities=17%  Similarity=0.172  Sum_probs=99.0

Q ss_pred             ccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEe
Q 024866           14 EESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIF   93 (261)
Q Consensus        14 ~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~   93 (261)
                      +..++.+.+...++.++.+++|+.|++.......+..+    ....+++.+.+.++. .+.+   +.+..+++|+.+.++
T Consensus        44 ~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l----~~l~~l~~l~~~~n~-~~~i---~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          44 TTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPL----KNLTKITELELSGNP-LKNV---SAIAGLQSIKTLDLT  115 (227)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGG----TTCCSCCEEECCSCC-CSCC---GGGTTCTTCCEEECT
T ss_pred             CEEECCCCCCCcchhHhcCCCCcEeecCCceeeccccc----ccccccccccccccc-cccc---ccccccccccccccc
Confidence            34444555555555566666666666553222111111    112355566665542 2333   335556666666665


Q ss_pred             ccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCC
Q 024866           94 KGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGH  173 (261)
Q Consensus        94 ~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~  173 (261)
                      +|....            .+.....+.++.+.+.++ .+.....+..+++|++|.+.+|. +....             .
T Consensus       116 ~~~~~~------------~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~n~-~~~~~-------------~  168 (227)
T d1h6ua2         116 STQITD------------VTPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNAQ-VSDLT-------------P  168 (227)
T ss_dssp             TSCCCC------------CGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-------------G
T ss_pred             cccccc------------cchhccccchhhhhchhh-hhchhhhhccccccccccccccc-cccch-------------h
Confidence            554221            011134556677776655 34444445667888888887763 22111             2


Q ss_pred             cccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          174 ISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       174 ~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      +..+++|+.|++.++ +++.+.. ...+++|++|.+++| +++.+|.  .+....|+++.
T Consensus       169 l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~~--l~~l~~L~~L~  223 (227)
T d1h6ua2         169 LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVSP--LANTSNLFIVT  223 (227)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCGG--GTTCTTCCEEE
T ss_pred             hcccccceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCCcc--cccCCCCCEEE
Confidence            345788888888876 5777643 446788888888888 6887763  22235666653

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=2.6e-11  Score=102.47  Aligned_cols=187  Identities=19%  Similarity=0.124  Sum_probs=120.9

Q ss_pred             eEeeeccccccccCC--CcchhhhhhcccCCceEEEEEcc---hHHHHHHhhCcccccceeEEEEcCCCCCCcccccccc
Q 024866            7 FNFHEASEESVLFGG--GEVLVQELLGLKYLEVLELTLGS---YQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAF   81 (261)
Q Consensus         7 ~~~~~~~~~~~~~~~--~~~~l~eL~~L~~L~~L~i~~~~---~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l   81 (261)
                      |+.-+..++.++.+.  +...+..+..+++|+.|+++...   ...+..+...   .++|+.|++++|..+..-.....+
T Consensus        67 ~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~---~~~L~~L~ls~c~~~~~~~~~~~~  143 (284)
T d2astb2          67 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS---CSRLDELNLSWCFDFTEKHVQVAV  143 (284)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH---CTTCCEEECCCCTTCCHHHHHHHH
T ss_pred             HHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHH---HHhccccccccccccccccchhhh
Confidence            334456666666665  35678888899999999997532   2234444332   357999999999887654332223


Q ss_pred             cc-cCCCCeEEEeccCC-cceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC--CccccCCCCcEEEEeccccccc
Q 024866           82 AD-LNHLNELYIFKGIE-LEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV--TFLVFAPNLKSLRLFDCGAMEE  157 (261)
Q Consensus        82 ~~-l~~L~~L~i~~c~~-Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l--~~l~~lp~L~~L~i~~C~~L~~  157 (261)
                      .. .++|+.|.+++|.. +..-.+...        ...+++|++|++++|..+++-  ..+..+|+|++|++++|..+.+
T Consensus       144 ~~~~~~L~~L~l~~~~~~i~~~~l~~l--------~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~  215 (284)
T d2astb2         144 AHVSETITQLNLSGYRKNLQKSDLSTL--------VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP  215 (284)
T ss_dssp             HHSCTTCCEEECCSCGGGSCHHHHHHH--------HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCG
T ss_pred             cccccccchhhhccccccccccccccc--------ccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCCh
Confidence            33 47899999998742 221101000        135789999999999988753  3456789999999999988754


Q ss_pred             ccccccccccCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCC
Q 024866          158 IISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPP  219 (261)
Q Consensus       158 i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp  219 (261)
                      ...           ..+..+|+|++|++.+|-.-..+..-...+|+|+   + +|.++..+.
T Consensus       216 ~~l-----------~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~---i-~~~~ls~~~  262 (284)
T d2astb2         216 ETL-----------LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---I-NCSHFTTIA  262 (284)
T ss_dssp             GGG-----------GGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE---E-SCCCSCCTT
T ss_pred             HHH-----------HHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc---c-cCccCCCCC
Confidence            321           1345689999999998832222211122456654   3 677777654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=3.3e-10  Score=90.39  Aligned_cols=151  Identities=13%  Similarity=0.173  Sum_probs=104.2

Q ss_pred             cccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccc
Q 024866           31 GLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVR  110 (261)
Q Consensus        31 ~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~  110 (261)
                      .+.+|+.|.+...+..+++.+    ..+++|++|+++++ .+..+   ..++.+++|+.|+++++... .+         
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l----~~l~nL~~L~Ls~N-~l~~~---~~l~~l~~L~~L~l~~n~~~-~~---------   99 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGV----EYLNNLTQINFSNN-QLTDI---TPLKNLTKLVDILMNNNQIA-DI---------   99 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTG----GGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSCCC-CC---------
T ss_pred             HhcCCCEEECCCCCCCCcccc----ccCCCcCcCccccc-cccCc---ccccCCcccccccccccccc-cc---------
Confidence            456666777664443333322    23468999999987 55665   34788999999999887532 22         


Q ss_pred             cCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcc
Q 024866          111 KRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPH  190 (261)
Q Consensus       111 ~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~  190 (261)
                        +....+++|+.|++.+|. ...+..+..+++|+.|+++++. +..+.             .+..+++|+.|++.++ +
T Consensus       100 --~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~-------------~l~~~~~L~~L~l~~n-~  161 (199)
T d2omxa2         100 --TPLANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRLELSSNT-ISDIS-------------ALSGLTSLQQLNFSSN-Q  161 (199)
T ss_dssp             --GGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC-CCCCG-------------GGTTCTTCSEEECCSS-C
T ss_pred             --cccccccccccccccccc-cccccccchhhhhHHhhhhhhh-hcccc-------------cccccccccccccccc-c
Confidence              223568899999998874 4555567789999999998863 33221             2345788999999886 4


Q ss_pred             cccccCCCccCCccceeeeccCccCCCCC
Q 024866          191 LKSIFWKPLPFTHLKKMAVLMCDQLRKPP  219 (261)
Q Consensus       191 L~~i~~~~~~~p~L~~L~i~~C~~L~~lp  219 (261)
                      ++.+.. ...+++|+.|+++++ +++.++
T Consensus       162 l~~l~~-l~~l~~L~~L~ls~N-~i~~i~  188 (199)
T d2omxa2         162 VTDLKP-LANLTTLERLDISSN-KVSDIS  188 (199)
T ss_dssp             CCCCGG-GTTCTTCCEEECCSS-CCCCCG
T ss_pred             ccCCcc-ccCCCCCCEEECCCC-CCCCCc
Confidence            666542 456899999999998 577776

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.00  E-value=6.4e-10  Score=89.48  Aligned_cols=161  Identities=18%  Similarity=0.213  Sum_probs=101.0

Q ss_pred             ccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEeccccccccc
Q 024866           32 LKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRK  111 (261)
Q Consensus        32 L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~  111 (261)
                      |.+|+.|.+......++..    ...+++|+.|+++++ .+..+   +.++.+++|+.|+++++. ++.+          
T Consensus        45 L~~L~~L~l~~~~i~~l~~----l~~l~~L~~L~L~~n-~i~~l---~~~~~l~~L~~L~l~~n~-i~~l----------  105 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGN-KLTDI---KPLANLKNLGWLFLDENK-VKDL----------  105 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCCG----------
T ss_pred             hcCccEEECcCCCCCCchh----HhhCCCCCEEeCCCc-cccCc---cccccCcccccccccccc-cccc----------
Confidence            4455556555333222222    233568899999987 45555   346788899999988774 4322          


Q ss_pred             CCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccc
Q 024866          112 RREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHL  191 (261)
Q Consensus       112 ~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L  191 (261)
                       +....+++|+.|++.++. +.++..+..+++|+.++++++. +....             ....+++|+.+.+.++ ++
T Consensus       106 -~~l~~l~~L~~L~l~~~~-~~~~~~l~~l~~l~~l~~~~n~-l~~~~-------------~~~~l~~L~~l~l~~n-~l  168 (210)
T d1h6ta2         106 -SSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNK-ITDIT-------------VLSRLTKLDTLSLEDN-QI  168 (210)
T ss_dssp             -GGGTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSC-CCCCG-------------GGGGCTTCSEEECCSS-CC
T ss_pred             -cccccccccccccccccc-cccccccccccccccccccccc-ccccc-------------cccccccccccccccc-cc
Confidence             223567888888888874 5566667778888888887753 22211             2234678888888776 35


Q ss_pred             ccccCCCccCCccceeeeccCccCCCCCCCCccccCCceEE
Q 024866          192 KSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVI  232 (261)
Q Consensus       192 ~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~  232 (261)
                      +.+.. ...+++|++|.+++| +++.+|.  .+...+|++.
T Consensus       169 ~~i~~-l~~l~~L~~L~Ls~N-~i~~l~~--l~~l~~L~~L  205 (210)
T d1h6ta2         169 SDIVP-LAGLTKLQNLYLSKN-HISDLRA--LAGLKNLDVL  205 (210)
T ss_dssp             CCCGG-GTTCTTCCEEECCSS-CCCBCGG--GTTCTTCSEE
T ss_pred             ccccc-ccCCCCCCEEECCCC-CCCCChh--hcCCCCCCEE
Confidence            55542 345788888888887 5777662  2223556554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.93  E-value=1.3e-09  Score=86.91  Aligned_cols=35  Identities=26%  Similarity=0.412  Sum_probs=16.2

Q ss_pred             CCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecc
Q 024866          117 VFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDC  152 (261)
Q Consensus       117 ~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C  152 (261)
                      .+++|+.|++.++ .+..++.+..+++|++|++++|
T Consensus        82 ~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          82 NLTKLVDILMNNN-QIADITPLANLTNLTGLTLFNN  116 (199)
T ss_dssp             TCTTCCEEECCSS-CCCCCGGGTTCTTCSEEECCSS
T ss_pred             CCccccccccccc-cccccccccccccccccccccc
Confidence            4445555555444 2333333444555555555444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.87  E-value=1.3e-08  Score=87.66  Aligned_cols=76  Identities=14%  Similarity=0.110  Sum_probs=49.2

Q ss_pred             ccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEE
Q 024866           12 ASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELY   91 (261)
Q Consensus        12 ~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~   91 (261)
                      ..+..++.+.+...++.++.+++|+.|++..-...++..    ..-+.+|+.|+++++. +..+   ..++.+++|+.|+
T Consensus        45 ~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~----l~~L~~L~~L~L~~n~-i~~i---~~l~~l~~L~~L~  116 (384)
T d2omza2          45 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP----LKNLTKLVDILMNNNQ-IADI---TPLANLTNLTGLT  116 (384)
T ss_dssp             TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSC-CCCC---GGGTTCTTCCEEE
T ss_pred             CCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc----ccCCcccccccccccc-cccc---ccccccccccccc
Confidence            345566777777777788888888888887544333322    1223578888888764 3444   3467778888887


Q ss_pred             Eecc
Q 024866           92 IFKG   95 (261)
Q Consensus        92 i~~c   95 (261)
                      +.++
T Consensus       117 ~~~~  120 (384)
T d2omza2         117 LFNN  120 (384)
T ss_dssp             CCSS
T ss_pred             cccc
Confidence            7653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.83  E-value=4.7e-09  Score=84.27  Aligned_cols=160  Identities=18%  Similarity=0.212  Sum_probs=87.4

Q ss_pred             ccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEe
Q 024866           14 EESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIF   93 (261)
Q Consensus        14 ~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~   93 (261)
                      +..++.+.....+..++.+++|+.|++.......+..+    ..+.+|+.|+++++ .++.+   +.+..+++|+.|+++
T Consensus        49 ~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~----~~l~~L~~L~l~~n-~i~~l---~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          49 DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPL----ANLKNLGWLFLDEN-KVKDL---SSLKDLKKLKSLSLE  120 (210)
T ss_dssp             CEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGG----TTCTTCCEEECCSS-CCCCG---GGGTTCTTCCEEECT
T ss_pred             cEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcccc----ccCccccccccccc-ccccc---ccccccccccccccc
Confidence            33455555555555566667777776664332222211    12346677777665 34444   345666777777766


Q ss_pred             ccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCC
Q 024866           94 KGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGH  173 (261)
Q Consensus        94 ~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~  173 (261)
                      ++.... +           +....+++++.+.+.++ .+.++.....+++|++++++++ .+.++.             .
T Consensus       121 ~~~~~~-~-----------~~l~~l~~l~~l~~~~n-~l~~~~~~~~l~~L~~l~l~~n-~l~~i~-------------~  173 (210)
T d1h6ta2         121 HNGISD-I-----------NGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDN-QISDIV-------------P  173 (210)
T ss_dssp             TSCCCC-C-----------GGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS-CCCCCG-------------G
T ss_pred             cccccc-c-----------ccccccccccccccccc-cccccccccccccccccccccc-cccccc-------------c
Confidence            654221 1           11244566677766555 4555555566777777777665 333321             1


Q ss_pred             cccCCcccEEeccCCcccccccCCCccCCccceeeec
Q 024866          174 ISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVL  210 (261)
Q Consensus       174 ~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~  210 (261)
                      +..+++|+.|+++++ +++.+. ....+++|+.|+++
T Consensus       174 l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         174 LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEEEE
T ss_pred             ccCCCCCCEEECCCC-CCCCCh-hhcCCCCCCEEEcc
Confidence            234667777777665 355554 23446667776664

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=9.6e-09  Score=88.57  Aligned_cols=98  Identities=16%  Similarity=0.164  Sum_probs=60.2

Q ss_pred             cCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccccc
Q 024866          116 FVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIF  195 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~  195 (261)
                      ..++.++.+.+.++ .+.++..+..++++++|+++++ +++++.             .+..+|+|++|++.++ +++.+.
T Consensus       282 ~~~~~l~~l~~~~n-~l~~~~~~~~~~~l~~L~ls~n-~l~~l~-------------~l~~l~~L~~L~L~~n-~l~~l~  345 (384)
T d2omza2         282 AGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN-NISDIS-------------PVSSLTKLQRLFFANN-KVSDVS  345 (384)
T ss_dssp             TTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSS-CCSCCG-------------GGGGCTTCCEEECCSS-CCCCCG
T ss_pred             cccccccccccccc-ccccccccchhcccCeEECCCC-CCCCCc-------------ccccCCCCCEEECCCC-CCCCCh
Confidence            44556666666655 4555555566788888888776 444432             2345788888888877 466654


Q ss_pred             CCCccCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          196 WKPLPFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       196 ~~~~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                       ....+++|++|+++++ +++.++.  ......|+.++
T Consensus       346 -~l~~l~~L~~L~l~~N-~l~~l~~--l~~l~~L~~L~  379 (384)
T d2omza2         346 -SLANLTNINWLSAGHN-QISDLTP--LANLTRITQLG  379 (384)
T ss_dssp             -GGGGCTTCCEEECCSS-CCCBCGG--GTTCTTCSEEE
T ss_pred             -hHcCCCCCCEEECCCC-cCCCChh--hccCCCCCEee
Confidence             2445788888888776 5666652  12234555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.79  E-value=5.5e-09  Score=84.56  Aligned_cols=168  Identities=18%  Similarity=0.168  Sum_probs=123.3

Q ss_pred             eEeeeccccccccCCCcchhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCC
Q 024866            7 FNFHEASEESVLFGGGEVLVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNH   86 (261)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~   86 (261)
                      ++.++..+..++++.....+..+..+++|+.+.+.......+..+.    .+.+|+.+.++++.... +   ..+...+.
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~----~l~~L~~l~l~~~~~~~-~---~~~~~~~~  130 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIA----GLQSIKTLDLTSTQITD-V---TPLAGLSN  130 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGT----TCTTCCEEECTTSCCCC-C---GGGTTCTT
T ss_pred             HhcCCCCcEeecCCceeecccccccccccccccccccccccccccc----ccccccccccccccccc-c---chhccccc
Confidence            5678999999999988888888899999999888754433333222    24578999999886532 2   34566778


Q ss_pred             CCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccc
Q 024866           87 LNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAE  166 (261)
Q Consensus        87 L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~  166 (261)
                      ++.+.+.++.....            ......++|+.|.+.+| .+.+...++.+++|++|++++| .++.+.       
T Consensus       131 ~~~l~~~~~~~~~~------------~~~~~~~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~Ls~n-~l~~l~-------  189 (227)
T d1h6ua2         131 LQVLYLDLNQITNI------------SPLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDN-KISDIS-------  189 (227)
T ss_dssp             CCEEECCSSCCCCC------------GGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCCCG-------
T ss_pred             hhhhhchhhhhchh------------hhhcccccccccccccc-ccccchhhcccccceecccCCC-ccCCCh-------
Confidence            88888877653221            11245778999999887 5666666788999999999987 566543       


Q ss_pred             cCcccCCcccCCcccEEeccCCcccccccCCCccCCccceeeecc
Q 024866          167 TPEMMGHISPFENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLM  211 (261)
Q Consensus       167 ~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~  211 (261)
                            .+..+++|++|++.++ +++++.. ...+++|+.|.+++
T Consensus       190 ------~l~~l~~L~~L~Ls~N-~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         190 ------PLASLPNLIEVHLKNN-QISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             ------GGGGCTTCCEEECTTS-CCCBCGG-GTTCTTCCEEEEEE
T ss_pred             ------hhcCCCCCCEEECcCC-cCCCCcc-cccCCCCCEEEeeC
Confidence                  2346899999999998 6888863 45789999998864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2e-07  Score=76.99  Aligned_cols=158  Identities=16%  Similarity=0.127  Sum_probs=85.5

Q ss_pred             cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccC
Q 024866           33 KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKR  112 (261)
Q Consensus        33 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~  112 (261)
                      ++|+.|+++.-....+.  ......+++|+.|+|+++ ++..++   .++.+++|+.|+++++. +..+          .
T Consensus        31 ~~l~~L~Ls~N~i~~l~--~~~f~~l~~L~~L~L~~N-~l~~l~---~~~~l~~L~~L~Ls~N~-l~~~----------~   93 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFS--LATLMPYTRLTQLNLDRA-ELTKLQ---VDGTLPVLGTLDLSHNQ-LQSL----------P   93 (266)
T ss_dssp             TTCCEEECTTSCCSEEE--GGGGTTCTTCCEEECTTS-CCCEEE---CCSCCTTCCEEECCSSC-CSSC----------C
T ss_pred             cCCCEEECcCCcCCCcC--HHHhhccccccccccccc-cccccc---ccccccccccccccccc-cccc----------c
Confidence            46777766632211111  011223457888888876 556663   35678888888888764 3211          1


Q ss_pred             CCCcCCCCCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcc
Q 024866          113 REPFVFRSLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPH  190 (261)
Q Consensus       113 p~~~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~  190 (261)
                      +....+++|+.|+++++. +..+.  ....++++++|.+.++ .+..+..           .....+++|+.|++.+. +
T Consensus        94 ~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~-----------~~~~~l~~l~~l~l~~N-~  159 (266)
T d1p9ag_          94 LLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGN-ELKTLPP-----------GLLTPTPKLEKLSLANN-N  159 (266)
T ss_dssp             CCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTS-CCCCCCT-----------TTTTTCTTCCEEECTTS-C
T ss_pred             cccccccccccccccccc-cceeecccccccccccccccccc-ccceecc-----------ccccccccchhcccccc-c
Confidence            223456777777777663 33332  2245677777777664 3333221           12234556666666654 3


Q ss_pred             cccccCCC-ccCCccceeeeccCccCCCCCCCC
Q 024866          191 LKSIFWKP-LPFTHLKKMAVLMCDQLRKPPLDS  222 (261)
Q Consensus       191 L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~  222 (261)
                      ++.+..+. ..+++|++|+++++. |+.+|.+.
T Consensus       160 l~~~~~~~~~~l~~L~~L~Ls~N~-L~~lp~~~  191 (266)
T d1p9ag_         160 LTELPAGLLNGLENLDTLLLQENS-LYTIPKGF  191 (266)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred             ccccCccccccccccceeecccCC-CcccChhH
Confidence            55554332 235666666666653 66666543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=8.4e-07  Score=73.10  Aligned_cols=144  Identities=17%  Similarity=0.092  Sum_probs=101.9

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCC-Cc
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDV-TF  137 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l-~~  137 (261)
                      ++++.|+|++. .+..++. ..+..+++|++|+++++. +..+.           ..+.+++|+.|+++++ +++.. ..
T Consensus        31 ~~l~~L~Ls~N-~i~~l~~-~~f~~l~~L~~L~L~~N~-l~~l~-----------~~~~l~~L~~L~Ls~N-~l~~~~~~   95 (266)
T d1p9ag_          31 KDTTILHLSEN-LLYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQ-----------VDGTLPVLGTLDLSHN-QLQSLPLL   95 (266)
T ss_dssp             TTCCEEECTTS-CCSEEEG-GGGTTCTTCCEEECTTSC-CCEEE-----------CCSCCTTCCEEECCSS-CCSSCCCC
T ss_pred             cCCCEEECcCC-cCCCcCH-HHhhcccccccccccccc-ccccc-----------cccccccccccccccc-cccccccc
Confidence            57999999984 5677765 678899999999999874 66552           2356889999999987 56654 33


Q ss_pred             cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCC-ccCCccceeeeccCccCC
Q 024866          138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKP-LPFTHLKKMAVLMCDQLR  216 (261)
Q Consensus       138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~  216 (261)
                      ...+++|++|+++++... .+..           .....+++++.|.+.+. .++.+.... ..+++|+.+.+.++ +++
T Consensus        96 ~~~l~~L~~L~l~~~~~~-~~~~-----------~~~~~l~~l~~L~l~~n-~l~~l~~~~~~~l~~l~~l~l~~N-~l~  161 (266)
T d1p9ag_          96 GQTLPALTVLDVSFNRLT-SLPL-----------GALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN-NLT  161 (266)
T ss_dssp             TTTCTTCCEEECCSSCCC-CCCS-----------STTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCS
T ss_pred             cccccccccccccccccc-eeec-----------ccccccccccccccccc-ccceeccccccccccchhcccccc-ccc
Confidence            467999999999987532 2221           13356788999999876 467776543 35789999999887 667


Q ss_pred             CCCCCCccccCCceE
Q 024866          217 KPPLDSNSAKERKFV  231 (261)
Q Consensus       217 ~lp~~~~~~~~~l~~  231 (261)
                      .+|........+|+.
T Consensus       162 ~~~~~~~~~l~~L~~  176 (266)
T d1p9ag_         162 ELPAGLLNGLENLDT  176 (266)
T ss_dssp             CCCTTTTTTCTTCCE
T ss_pred             ccCccccccccccce
Confidence            776544333334443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.53  E-value=3.9e-07  Score=76.34  Aligned_cols=114  Identities=11%  Similarity=0.083  Sum_probs=73.4

Q ss_pred             cCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccccccccccccc-cc----------ccCcc-cCCcccCCcccEE
Q 024866          116 FVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGK-IA----------ETPEM-MGHISPFENLQSL  183 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~-~~----------~~~~~-~~~~~~~p~L~~L  183 (261)
                      ..+++|+.+.+.++ ++..++ ...+++|++|++.++.........-. ..          ..+++ +..+..+++|++|
T Consensus       147 ~~l~~L~~l~l~~n-~l~~l~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L  224 (305)
T d1xkua_         147 QGMKKLSYIRIADT-NITTIP-QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLREL  224 (305)
T ss_dssp             GGCTTCCEEECCSS-CCCSCC-SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEE
T ss_pred             ccccccCccccccC-CccccC-cccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceee
Confidence            34567888888776 455443 23477888888877654332211000 00          01111 2345668999999


Q ss_pred             eccCCcccccccCCCccCCccceeeeccCccCCCCCCCCc------cccCCceEEE
Q 024866          184 DLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLDSN------SAKERKFVIR  233 (261)
Q Consensus       184 ~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~~~------~~~~~l~~~~  233 (261)
                      ++.++ +|++++.+...+++|+.|.++++ +|+.++....      +...+++.+.
T Consensus       225 ~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~  278 (305)
T d1xkua_         225 HLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVS  278 (305)
T ss_dssp             ECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEE
T ss_pred             ecccc-cccccccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEE
Confidence            99998 69999776677999999999997 6888875443      2335666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=4.4e-07  Score=69.63  Aligned_cols=103  Identities=18%  Similarity=0.219  Sum_probs=69.0

Q ss_pred             ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--  137 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--  137 (261)
                      .++.|+++++ ++..++  .....+++|+.|+++++. +..+           +....+++|+.|+++++ +++.++.  
T Consensus        19 ~lr~L~L~~n-~I~~i~--~~~~~l~~L~~L~Ls~N~-i~~l-----------~~~~~l~~L~~L~ls~N-~i~~l~~~~   82 (162)
T d1a9na_          19 RDRELDLRGY-KIPVIE--NLGATLDQFDAIDFSDNE-IRKL-----------DGFPLLRRLKTLLVNNN-RICRIGEGL   82 (162)
T ss_dssp             SCEEEECTTS-CCCSCC--CGGGGTTCCSEEECCSSC-CCEE-----------CCCCCCSSCCEEECCSS-CCCEECSCH
T ss_pred             cCcEEECCCC-CCCccC--ccccccccCCEEECCCCC-CCcc-----------CCcccCcchhhhhcccc-cccCCCccc
Confidence            6788888885 455552  234667889999988864 5544           12256788999999888 4776642  


Q ss_pred             cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCc
Q 024866          138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLP  189 (261)
Q Consensus       138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  189 (261)
                      ...+++|++|+++++. ++.+...          ..+..+|+|++|++.+++
T Consensus        83 ~~~l~~L~~L~L~~N~-i~~~~~l----------~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_          83 DQALPDLTELILTNNS-LVELGDL----------DPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             HHHCTTCCEEECCSCC-CCCGGGG----------GGGGGCTTCCEEECCSSG
T ss_pred             cccccccccceecccc-ccccccc----------cccccccccchhhcCCCc
Confidence            3468899999888863 3332210          133467888888888875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=6.3e-06  Score=66.25  Aligned_cols=184  Identities=13%  Similarity=0.042  Sum_probs=96.5

Q ss_pred             cCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccC
Q 024866           33 KYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKR  112 (261)
Q Consensus        33 ~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~  112 (261)
                      .+++.|++..-....+..  ....-+.+|+.|+++++.....++. ..+..+++++++.+.++.++..+..+.       
T Consensus        29 ~~l~~L~Ls~n~i~~l~~--~~f~~l~~L~~L~ls~n~~~~~i~~-~~f~~l~~l~~l~~~~~n~l~~~~~~~-------   98 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQK--GAFSGFGDLEKIEISQNDVLEVIEA-DVFSNLPKLHEIRIEKANNLLYINPEA-------   98 (242)
T ss_dssp             SCCSEEEEESCCCCEECT--TTTTTCTTCCEEEEESCTTCCEECS-SSEESCTTCCEEEEECCTTCCEECTTS-------
T ss_pred             CCCCEEECcCCcCCccCh--hHhhccchhhhhhhccccccceeec-ccccccccccccccccccccccccccc-------
Confidence            466777776332221111  0112234677888877655444433 456667777777777776665542211       


Q ss_pred             CCCcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEeccc--cccccccccc---c----------cccCcccCCcccC
Q 024866          113 REPFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCG--AMEEIISVGK---I----------AETPEMMGHISPF  177 (261)
Q Consensus       113 p~~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~--~L~~i~~~~~---~----------~~~~~~~~~~~~~  177 (261)
                        ...+++|+.+.+.++ ++........+.+++.+.+..+.  .+..+.....   .          ...+.++......
T Consensus        99 --~~~l~~L~~l~l~~~-~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~  175 (242)
T d1xwdc1          99 --FQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNG  175 (242)
T ss_dssp             --EECCTTCCEEEEESC-CCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTT
T ss_pred             --ccccccccccccchh-hhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccc
Confidence              245678888888876 46555444444555554433322  2332211100   0          0001122223334


Q ss_pred             CcccEEeccCCcccccccCCC-ccCCccceeeeccCccCCCCCCCCccccCCce
Q 024866          178 ENLQSLDLDDLPHLKSIFWKP-LPFTHLKKMAVLMCDQLRKPPLDSNSAKERKF  230 (261)
Q Consensus       178 p~L~~L~L~~~~~L~~i~~~~-~~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~  230 (261)
                      ++++.+......++++++... ..+++|+.|++++.. ++.+|.........|+
T Consensus       176 ~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~  228 (242)
T d1xwdc1         176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLR  228 (242)
T ss_dssp             CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEE
T ss_pred             hhhhccccccccccccccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccc
Confidence            556666655666777776543 347888888887764 7777765443334443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.3e-06  Score=72.44  Aligned_cols=179  Identities=16%  Similarity=0.109  Sum_probs=96.9

Q ss_pred             cccccccCCCcchhh--hhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCCCCCCcccccccccccCCCCeE
Q 024866           13 SEESVLFGGGEVLVQ--ELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLVRDTPSIIDATAFADLNHLNEL   90 (261)
Q Consensus        13 ~~~~~~~~~~~~~l~--eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L   90 (261)
                      .+..+++......+.  .+..+++|+.|++.......+..  ........++.+.+.....+..++. ..+..+++|+.|
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~--~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~l~~L~~L  110 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA--AAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTL  110 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSCTTCCCCCT-TTTTTCTTCCEE
T ss_pred             CCEEECcCCcCCCCCHHHhhcccccccccccccccccccc--ccccccccccccccccccccccccc-hhhcccccCCEE
Confidence            455666665544333  36666777777765322111110  1111123455666666666666644 556777888888


Q ss_pred             EEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccccccC
Q 024866           91 YIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKIAETP  168 (261)
Q Consensus        91 ~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~  168 (261)
                      +++++..- .+..         .....+.+|+.+++.+. .++.++  .+..+++|++|+++++ .++.+..        
T Consensus       111 ~l~~n~~~-~~~~---------~~~~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~~N-~l~~l~~--------  170 (284)
T d1ozna_         111 HLDRCGLQ-ELGP---------GLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHGN-RISSVPE--------  170 (284)
T ss_dssp             ECTTSCCC-CCCT---------TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCEECT--------
T ss_pred             ecCCcccc-cccc---------cccchhcccchhhhccc-cccccChhHhccccchhhcccccC-cccccch--------
Confidence            87776531 1111         11245667777777665 566553  2345677778877776 3444332        


Q ss_pred             cccCCcccCCcccEEeccCCccccccc-CCCccCCccceeeeccCccCCCCC
Q 024866          169 EMMGHISPFENLQSLDLDDLPHLKSIF-WKPLPFTHLKKMAVLMCDQLRKPP  219 (261)
Q Consensus       169 ~~~~~~~~~p~L~~L~L~~~~~L~~i~-~~~~~~p~L~~L~i~~C~~L~~lp  219 (261)
                         ..+..+++|+.+.+.+.. +..+. .....+++|++|+++++. +..++
T Consensus       171 ---~~f~~l~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~-i~~~~  217 (284)
T d1ozna_         171 ---RAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN-LSALP  217 (284)
T ss_dssp             ---TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCC
T ss_pred             ---hhhccccccchhhhhhcc-ccccChhHhhhhhhcccccccccc-ccccc
Confidence               123446677777776654 44443 233456777777776654 33444

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.31  E-value=9.3e-07  Score=73.93  Aligned_cols=83  Identities=13%  Similarity=0.154  Sum_probs=54.1

Q ss_pred             cCCCCCcEEEEecCCCCCCC--CccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccccc
Q 024866          116 FVFRSLHRVIIGECHKLKDV--TFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKS  193 (261)
Q Consensus       116 ~~~~~L~~L~l~~C~~l~~l--~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~  193 (261)
                      ..+++++.|.++++ ++.++  .+...+++|++|+++++ .++.+            +..+..+++|+.|++++. +|+.
T Consensus       192 ~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L~~l------------p~~l~~l~~L~~L~Ls~N-~i~~  256 (305)
T d1xkua_         192 KGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KLVKV------------PGGLADHKYIQVVYLHNN-NISA  256 (305)
T ss_dssp             TTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CCSSC------------CTTTTTCSSCCEEECCSS-CCCC
T ss_pred             hccccccccccccc-cccccccccccccccceeeecccc-ccccc------------ccccccccCCCEEECCCC-ccCc
Confidence            34455666666555 34443  23345677777777776 34433            335667899999999996 5888


Q ss_pred             ccCCC-------ccCCccceeeeccCc
Q 024866          194 IFWKP-------LPFTHLKKMAVLMCD  213 (261)
Q Consensus       194 i~~~~-------~~~p~L~~L~i~~C~  213 (261)
                      +....       ...++|+.|.+++.|
T Consensus       257 i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         257 IGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cChhhccCcchhcccCCCCEEECCCCc
Confidence            75432       235789999998876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.5e-05  Score=62.56  Aligned_cols=163  Identities=18%  Similarity=0.183  Sum_probs=111.0

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--  136 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--  136 (261)
                      .++++|++++. .++.++. ..+..+++|++|+++++.....+....         ...+++++++.+.++..+..+.  
T Consensus        29 ~~l~~L~Ls~n-~i~~l~~-~~f~~l~~L~~L~ls~n~~~~~i~~~~---------f~~l~~l~~l~~~~~n~l~~~~~~   97 (242)
T d1xwdc1          29 RNAIELRFVLT-KLRVIQK-GAFSGFGDLEKIEISQNDVLEVIEADV---------FSNLPKLHEIRIEKANNLLYINPE   97 (242)
T ss_dssp             SCCSEEEEESC-CCCEECT-TTTTTCTTCCEEEEESCTTCCEECSSS---------EESCTTCCEEEEECCTTCCEECTT
T ss_pred             CCCCEEECcCC-cCCccCh-hHhhccchhhhhhhccccccceeeccc---------cccccccccccccccccccccccc
Confidence            57899999985 5677754 567889999999999987766542211         2457889999999888776653  


Q ss_pred             ccccCCCCcEEEEecccccccccccccccc-------------cCccc-CCcccC-CcccEEeccCCcccccccCCCccC
Q 024866          137 FLVFAPNLKSLRLFDCGAMEEIISVGKIAE-------------TPEMM-GHISPF-ENLQSLDLDDLPHLKSIFWKPLPF  201 (261)
Q Consensus       137 ~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~-------------~~~~~-~~~~~~-p~L~~L~L~~~~~L~~i~~~~~~~  201 (261)
                      .+..+++|++|+++++. +...........             ...++ ..+..+ ..++.|++.+ .+++.+....+..
T Consensus        98 ~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~-n~l~~i~~~~~~~  175 (242)
T d1xwdc1          98 AFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNCAFNG  175 (242)
T ss_dssp             SEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTTTTT
T ss_pred             cccccccccccccchhh-hcccccccccccccccccccccccccccccccccccccccceeeeccc-ccccccccccccc
Confidence            34679999999999873 443322111100             00111 122222 3566777765 4577777666677


Q ss_pred             CccceeeeccCccCCCCCCCCccccCCceEEEc
Q 024866          202 THLKKMAVLMCDQLRKPPLDSNSAKERKFVIRG  234 (261)
Q Consensus       202 p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~~  234 (261)
                      +++.++...++.+++.+|........+|+++.-
T Consensus       176 ~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~L  208 (242)
T d1xwdc1         176 TQLDELNLSDNNNLEELPNDVFHGASGPVILDI  208 (242)
T ss_dssp             CCEEEEECTTCTTCCCCCTTTTTTSCCCSEEEC
T ss_pred             hhhhccccccccccccccHHHhcCCCCCCEEEC
Confidence            888888888888999999877666688888764

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.22  E-value=1.4e-06  Score=73.10  Aligned_cols=44  Identities=14%  Similarity=0.059  Sum_probs=24.8

Q ss_pred             hhhhhhcccCCceEEEEEcchHHHHHHhhCcccccceeEEEEcCC
Q 024866           25 LVQELLGLKYLEVLELTLGSYQALQILLSSNKLKSCIRSLQLRLV   69 (261)
Q Consensus        25 ~l~eL~~L~~L~~L~i~~~~~~~l~~l~~~~~l~~~L~~L~L~~c   69 (261)
                      ...++..|++|++|++...+... ..++....-+.+|++|+|+++
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~-g~iP~~i~~L~~L~~L~Ls~N  111 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHT  111 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEE-SCCCGGGGGCTTCSEEEEEEE
T ss_pred             CChHHhcCccccccccccccccc-cccccccccccccchhhhccc
Confidence            44678888888888887422100 012222223456777777765

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.16  E-value=5.7e-06  Score=60.27  Aligned_cols=118  Identities=17%  Similarity=0.162  Sum_probs=74.3

Q ss_pred             eEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCccccC
Q 024866           62 RSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFLVFA  141 (261)
Q Consensus        62 ~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l~~l  141 (261)
                      |.|++++. +++.+   +.++++++|++|++++.. +..+.          +..+.+++|+.|++++. .+++++.+..+
T Consensus         1 R~L~Ls~n-~l~~l---~~l~~l~~L~~L~ls~N~-l~~lp----------~~~~~l~~L~~L~l~~N-~i~~l~~~~~l   64 (124)
T d1dcea3           1 RVLHLAHK-DLTVL---CHLEQLLLVTHLDLSHNR-LRALP----------PALAALRCLEVLQASDN-ALENVDGVANL   64 (124)
T ss_dssp             SEEECTTS-CCSSC---CCGGGGTTCCEEECCSSC-CCCCC----------GGGGGCTTCCEEECCSS-CCCCCGGGTTC
T ss_pred             CEEEcCCC-CCCCC---cccccCCCCCEEECCCCc-cCcch----------hhhhhhhcccccccccc-cccccCccccc
Confidence            45677763 55555   457888889999888653 44331          11356888999999886 68887767788


Q ss_pred             CCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCC----CccCCcccee
Q 024866          142 PNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWK----PLPFTHLKKM  207 (261)
Q Consensus       142 p~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~----~~~~p~L~~L  207 (261)
                      ++|++|++++. .+..+...          ..+..+++|+.|++.+-+ +..+...    ...+|+|+.|
T Consensus        65 ~~L~~L~l~~N-~i~~~~~~----------~~l~~~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          65 PRLQELLLCNN-RLQQSAAI----------QPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSCCEEECCSS-CCCSSSTT----------GGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             cccCeEECCCC-ccCCCCCc----------hhhcCCCCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence            99999988875 33332211          134567888888887633 3332211    2235666665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.8e-05  Score=65.27  Aligned_cols=157  Identities=14%  Similarity=0.165  Sum_probs=86.6

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccc--------------cccC--CCCcCCCCCc
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEI--------------VRKR--REPFVFRSLH  122 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~--------------~~~~--p~~~~~~~L~  122 (261)
                      +.++.|+|++. +++.++. .++..+++|++|++++.. +..+.......              ...+  .....+++|+
T Consensus        32 ~~~~~L~Ls~N-~i~~i~~-~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~  108 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVPA-ASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH  108 (284)
T ss_dssp             TTCSEEECTTS-CCCEECT-TTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred             CCCCEEECcCC-cCCCCCH-HHhhcccccccccccccc-ccccccccccccccccccccccccccccccchhhcccccCC
Confidence            46788888874 5677754 567888888988887654 33332111100              0001  1123455566


Q ss_pred             EEEEecCCCCCCCC--ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCc-
Q 024866          123 RVIIGECHKLKDVT--FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPL-  199 (261)
Q Consensus       123 ~L~l~~C~~l~~l~--~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~-  199 (261)
                      .|++.++. +..+.  ....+++|+.+++.+. .++.+..           ..+..+++|+.|++.+. +++.+....+ 
T Consensus       109 ~L~l~~n~-~~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~-----------~~f~~~~~L~~L~l~~N-~l~~l~~~~f~  174 (284)
T d1ozna_         109 TLHLDRCG-LQELGPGLFRGLAALQYLYLQDN-ALQALPD-----------DTFRDLGNLTHLFLHGN-RISSVPERAFR  174 (284)
T ss_dssp             EEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCT-----------TTTTTCTTCCEEECCSS-CCCEECTTTTT
T ss_pred             EEecCCcc-cccccccccchhcccchhhhccc-cccccCh-----------hHhccccchhhcccccC-cccccchhhhc
Confidence            66555542 22221  1234555555555543 2332221           13445778899998887 5777765433 


Q ss_pred             cCCccceeeeccCccCCCCCCCCccccCCceEEE
Q 024866          200 PFTHLKKMAVLMCDQLRKPPLDSNSAKERKFVIR  233 (261)
Q Consensus       200 ~~p~L~~L~i~~C~~L~~lp~~~~~~~~~l~~~~  233 (261)
                      .+++|+.+.+.++.-. .++........++..+.
T Consensus       175 ~l~~L~~l~l~~N~l~-~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             TCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             cccccchhhhhhcccc-ccChhHhhhhhhccccc
Confidence            4788888888877543 33333333345555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.09  E-value=2.3e-05  Score=65.61  Aligned_cols=40  Identities=25%  Similarity=0.068  Sum_probs=19.7

Q ss_pred             CCcccEEeccCCcccccccCCCccCCccceeeeccCccCCCCCCC
Q 024866          177 FENLQSLDLDDLPHLKSIFWKPLPFTHLKKMAVLMCDQLRKPPLD  221 (261)
Q Consensus       177 ~p~L~~L~L~~~~~L~~i~~~~~~~p~L~~L~i~~C~~L~~lp~~  221 (261)
                      +++|+.|++.++ +|++++.   .+++|++|++++|+ |+.+|..
T Consensus       303 ~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N~-L~~lp~~  342 (353)
T d1jl5a_         303 PPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYNP-LREFPDI  342 (353)
T ss_dssp             CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSSCCCC
T ss_pred             cCCCCEEECCCC-cCCcccc---ccCCCCEEECcCCc-CCCCCcc
Confidence            344445544443 2444321   23456666666664 6666643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.07  E-value=9.2e-06  Score=67.95  Aligned_cols=83  Identities=20%  Similarity=0.127  Sum_probs=46.2

Q ss_pred             ceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCC-CCcCCCCCcEEEEecCCCCCCCC--
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRR-EPFVFRSLHRVIIGECHKLKDVT--  136 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p-~~~~~~~L~~L~l~~C~~l~~l~--  136 (261)
                      +++.|++.++.--....+++.++++++|++|++++|..+..          .+| ..+.+++|++|+++++ ++..+.  
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g----------~iP~~i~~L~~L~~L~Ls~N-~l~~~~~~  119 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG----------PIPPAIAKLTQLHYLYITHT-NVSGAIPD  119 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES----------CCCGGGGGCTTCSEEEEEEE-CCEEECCG
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccc----------ccccccccccccchhhhccc-cccccccc
Confidence            46667777653322223335677777777777776665531          112 2356677777777766 343321  


Q ss_pred             ccccCCCCcEEEEeccc
Q 024866          137 FLVFAPNLKSLRLFDCG  153 (261)
Q Consensus       137 ~l~~lp~L~~L~i~~C~  153 (261)
                      ....+++|++++++++.
T Consensus       120 ~~~~~~~L~~l~l~~N~  136 (313)
T d1ogqa_         120 FLSQIKTLVTLDFSYNA  136 (313)
T ss_dssp             GGGGCTTCCEEECCSSE
T ss_pred             cccchhhhccccccccc
Confidence            13456666776666654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=9.5e-06  Score=61.84  Aligned_cols=127  Identities=10%  Similarity=0.034  Sum_probs=86.9

Q ss_pred             cccccCCCCeEEEeccCCcceEecccccccccCCC-CcCCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccc
Q 024866           80 AFADLNHLNELYIFKGIELEELKIDYTEIVRKRRE-PFVFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEI  158 (261)
Q Consensus        80 ~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~-~~~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i  158 (261)
                      .+.+...|++|+++++. +..|           +. ...+++|+.|+++++ +++++..+..+++|++|++++|. ++.+
T Consensus        13 ~~~n~~~lr~L~L~~n~-I~~i-----------~~~~~~l~~L~~L~Ls~N-~i~~l~~~~~l~~L~~L~ls~N~-i~~l   78 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYK-IPVI-----------ENLGATLDQFDAIDFSDN-EIRKLDGFPLLRRLKTLLVNNNR-ICRI   78 (162)
T ss_dssp             EEECTTSCEEEECTTSC-CCSC-----------CCGGGGTTCCSEEECCSS-CCCEECCCCCCSSCCEEECCSSC-CCEE
T ss_pred             hccCcCcCcEEECCCCC-CCcc-----------CccccccccCCEEECCCC-CCCccCCcccCcchhhhhccccc-ccCC
Confidence            34566688899988865 3333           11 145889999999997 68887667789999999999985 5544


Q ss_pred             cccccccccCcccCCcccCCcccEEeccCCcccccccC--CCccCCccceeeeccCccCCCCCCC---CccccCCceEEE
Q 024866          159 ISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW--KPLPFTHLKKMAVLMCDQLRKPPLD---SNSAKERKFVIR  233 (261)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~p~L~~L~i~~C~~L~~lp~~---~~~~~~~l~~~~  233 (261)
                      ...           ....+++|+.|++.+.. ++.+..  ....+|+|++|.+++|+ +..+|..   .....++|+.+.
T Consensus        79 ~~~-----------~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          79 GEG-----------LDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSC-----------HHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET
T ss_pred             Ccc-----------ccccccccccceecccc-ccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC
Confidence            321           12458999999998864 554432  23468999999999996 3445531   112245666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.88  E-value=3e-08  Score=78.89  Aligned_cols=103  Identities=15%  Similarity=0.247  Sum_probs=56.2

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCC-CcCCCCCcEEEEecCCCCCCCCc
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRRE-PFVFRSLHRVIIGECHKLKDVTF  137 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~-~~~~~~L~~L~l~~C~~l~~l~~  137 (261)
                      .+|+.|+++++ +++.+   +.+..+++|+.|+++++. +..+           +. ...+++|+.|++.++ +++++..
T Consensus        48 ~~L~~L~Ls~n-~I~~i---~~l~~l~~L~~L~Ls~N~-i~~i-----------~~~~~~~~~L~~L~l~~N-~i~~l~~  110 (198)
T d1m9la_          48 KACKHLALSTN-NIEKI---SSLSGMENLRILSLGRNL-IKKI-----------ENLDAVADTLEELWISYN-QIASLSG  110 (198)
T ss_dssp             TTCCEEECSEE-EESCC---CCHHHHTTCCEEECCEEE-ECSC-----------SSHHHHHHHCCEEECSEE-ECCCHHH
T ss_pred             cccceeECccc-CCCCc---ccccCCccccChhhcccc-cccc-----------cccccccccccccccccc-ccccccc
Confidence            45666776654 34444   345666777777776653 2221           11 123446777777665 5665544


Q ss_pred             cccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCc
Q 024866          138 LVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLP  189 (261)
Q Consensus       138 l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  189 (261)
                      +..+++|++|+++++. ++.+...          ..+..+++|+.|++.+.|
T Consensus       111 ~~~l~~L~~L~L~~N~-i~~~~~~----------~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNK-ITNWGEI----------DKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHHHSSEEEESEEE-CCCHHHH----------HHHTTTTTCSEEEECSSH
T ss_pred             ccccccccccccccch-hcccccc----------ccccCCCccceeecCCCc
Confidence            5566777777777652 2222110          023456777777777654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.51  E-value=1.4e-06  Score=68.96  Aligned_cols=124  Identities=14%  Similarity=0.141  Sum_probs=84.3

Q ss_pred             eeEEEEcC-CCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCcc-
Q 024866           61 IRSLQLRL-VRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTFL-  138 (261)
Q Consensus        61 L~~L~L~~-c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~l-  138 (261)
                      .+.+.+.+ .+.+..++  .+++.+++|++|+++++. ++.|           +....+++|+.|+++++ .+++++.+ 
T Consensus        25 ~~~~~l~~~~~~i~~l~--~sl~~L~~L~~L~Ls~n~-I~~i-----------~~l~~l~~L~~L~Ls~N-~i~~i~~~~   89 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMD--ATLSTLKACKHLALSTNN-IEKI-----------SSLSGMENLRILSLGRN-LIKKIENLD   89 (198)
T ss_dssp             CSCEECCBCCTTCCCCH--HHHHHTTTCCEEECSEEE-ESCC-----------CCHHHHTTCCEEECCEE-EECSCSSHH
T ss_pred             cceeeeecccCchhhhh--hHHhcccccceeECcccC-CCCc-----------ccccCCccccChhhccc-ccccccccc
Confidence            44455543 33444443  467889999999998763 4332           22357889999999988 57777543 


Q ss_pred             ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC--CCccCCccceeeeccCcc
Q 024866          139 VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW--KPLPFTHLKKMAVLMCDQ  214 (261)
Q Consensus       139 ~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~--~~~~~p~L~~L~i~~C~~  214 (261)
                      ..+++|++|+++++ .++.+.             .+..+++|+.|++++.. ++.+..  ....+|+|+.|.+++++-
T Consensus        90 ~~~~~L~~L~l~~N-~i~~l~-------------~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l  152 (198)
T d1m9la_          90 AVADTLEELWISYN-QIASLS-------------GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             HHHHHCCEEECSEE-ECCCHH-------------HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHH
T ss_pred             cccccccccccccc-cccccc-------------cccccccccccccccch-hccccccccccCCCccceeecCCCcc
Confidence            34678999999886 455432             23458899999998753 444431  234689999999998764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.46  E-value=0.0004  Score=53.60  Aligned_cols=115  Identities=14%  Similarity=0.097  Sum_probs=74.6

Q ss_pred             CCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--ccccCCCCcEEE
Q 024866           71 DTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--FLVFAPNLKSLR  148 (261)
Q Consensus        71 ~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--~l~~lp~L~~L~  148 (261)
                      +++.+|.  .+.  +++++|++++..--..+..         .....+++|+.|++.+. ++..+.  ....+++|++|+
T Consensus        19 ~L~~iP~--~lp--~~l~~L~Ls~N~i~~~~~~---------~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~~~~L~~L~   84 (192)
T d1w8aa_          19 GLKEIPR--DIP--LHTTELLLNDNELGRISSD---------GLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQ   84 (192)
T ss_dssp             CCSSCCS--CCC--TTCSEEECCSCCCCSBCCS---------CSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEE
T ss_pred             CcCccCC--CCC--CCCCEEEeCCCCCcccccc---------cccCCCceEeeeecccc-ccccccccccccccccceee
Confidence            4556642  232  5788888887542111110         11256789999999876 454442  335688999999


Q ss_pred             EecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccCCCc-cCCccceeeeccC
Q 024866          149 LFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFWKPL-PFTHLKKMAVLMC  212 (261)
Q Consensus       149 i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~~~~-~~p~L~~L~i~~C  212 (261)
                      +++. .++.+..           ..+..+++|+.|+|.+. +|+.+..+.+ .+++|++|.+.+-
T Consensus        85 Ls~N-~l~~l~~-----------~~F~~l~~L~~L~L~~N-~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          85 LGEN-KIKEISN-----------KMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCSC-CCCEECS-----------SSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECTTC
T ss_pred             eccc-cccccCH-----------HHHhCCCcccccccCCc-cccccCHHHhcCCccccccccccc
Confidence            9885 5555543           14556889999999885 4888876543 5788888877654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00032  Score=52.63  Aligned_cols=63  Identities=25%  Similarity=0.278  Sum_probs=33.9

Q ss_pred             cccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCCc--cccCCCCcEEEEecc
Q 024866           80 AFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVTF--LVFAPNLKSLRLFDC  152 (261)
Q Consensus        80 ~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~~--l~~lp~L~~L~i~~C  152 (261)
                      .+..+++|++|++++...++.|..+.         ...+++|+.|++++. +++.+..  ...+++|++|++++.
T Consensus        26 ~l~~l~~l~~L~l~~n~~l~~i~~~~---------f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          26 HLPGAENLTELYIENQQHLQHLELRD---------LRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             TSCSCSCCSEEECCSCSSCCEECGGG---------SCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCSS
T ss_pred             cccCccccCeeecCCCccccccCchh---------hccccccCcceeecc-ccCCcccccccccccccceeccCC
Confidence            34555666666666555555543211         134566666666665 4555421  345666666666653

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.44  E-value=0.00028  Score=50.81  Aligned_cols=84  Identities=15%  Similarity=0.077  Sum_probs=61.2

Q ss_pred             CCCcCCCCCcEEEEecCCCCCCCC-ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCccc
Q 024866          113 REPFVFRSLHRVIIGECHKLKDVT-FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHL  191 (261)
Q Consensus       113 p~~~~~~~L~~L~l~~C~~l~~l~-~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L  191 (261)
                      +..+.+++|++|++++. +++.++ .++.+++|++|++++. .++.+.             .+..+++|+.|++.+.. +
T Consensus        14 ~~l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-------------~~~~l~~L~~L~l~~N~-i   77 (124)
T d1dcea3          14 CHLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-------------GVANLPRLQELLLCNNR-L   77 (124)
T ss_dssp             CCGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-------------GGTTCSSCCEEECCSSC-C
T ss_pred             cccccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccc-cccccC-------------ccccccccCeEECCCCc-c
Confidence            33467899999999876 688875 3678999999999984 455432             34568999999998753 5


Q ss_pred             ccccC--CCccCCccceeeeccC
Q 024866          192 KSIFW--KPLPFTHLKKMAVLMC  212 (261)
Q Consensus       192 ~~i~~--~~~~~p~L~~L~i~~C  212 (261)
                      +.+..  ....+++|+.|++++-
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGN  100 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTS
T ss_pred             CCCCCchhhcCCCCCCEEECCCC
Confidence            55432  2345789999988773

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.44  E-value=0.00026  Score=54.69  Aligned_cols=107  Identities=21%  Similarity=0.261  Sum_probs=73.1

Q ss_pred             cceeEEEEcCCCCCCcccccccccccCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecCCCCCCCC--
Q 024866           59 SCIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGECHKLKDVT--  136 (261)
Q Consensus        59 ~~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C~~l~~l~--  136 (261)
                      .++++|+|++. .+..+.....+..+++|+.|++++..-. .+..         .....+++|+.|++++. +++.+.  
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~---------~~~~~~~~L~~L~Ls~N-~l~~l~~~   96 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLT-GIEP---------NAFEGASHIQELQLGEN-KIKEISNK   96 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCT---------TTTTTCTTCCEEECCSC-CCCEECSS
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeeccccccc-cccc---------cccccccccceeeeccc-cccccCHH
Confidence            47889999974 4443322256788999999999876533 2211         11256789999999887 677764  


Q ss_pred             ccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCc
Q 024866          137 FLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLP  189 (261)
Q Consensus       137 ~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  189 (261)
                      ....+++|++|++++. .++.+...           .+..+++|++|++.+-+
T Consensus        97 ~F~~l~~L~~L~L~~N-~l~~i~~~-----------~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          97 MFLGLHQLKTLNLYDN-QISCVMPG-----------SFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             SSTTCTTCCEEECCSS-CCCEECTT-----------SSTTCTTCCEEECTTCC
T ss_pred             HHhCCCcccccccCCc-cccccCHH-----------HhcCCcccccccccccc
Confidence            2467899999999985 56555431           34567889999987654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00062  Score=50.97  Aligned_cols=35  Identities=17%  Similarity=0.184  Sum_probs=17.6

Q ss_pred             ceeEEEEcCCCCCCcccccccccccCCCCeEEEecc
Q 024866           60 CIRSLQLRLVRDTPSIIDATAFADLNHLNELYIFKG   95 (261)
Q Consensus        60 ~L~~L~L~~c~~l~~l~~~~~l~~l~~L~~L~i~~c   95 (261)
                      +++.|++.+...++.++. .++..+++|+.|++++.
T Consensus        32 ~l~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~Ls~N   66 (156)
T d2ifga3          32 NLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKS   66 (156)
T ss_dssp             CCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSS
T ss_pred             ccCeeecCCCccccccCc-hhhccccccCcceeecc
Confidence            455555554444444443 34455555555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.56  E-value=0.002  Score=53.17  Aligned_cols=71  Identities=20%  Similarity=0.248  Sum_probs=47.9

Q ss_pred             CCCCCcEEEEecCCCCCCCCccccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCcccccccC
Q 024866          117 VFRSLHRVIIGECHKLKDVTFLVFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLPHLKSIFW  196 (261)
Q Consensus       117 ~~~~L~~L~l~~C~~l~~l~~l~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~~L~~i~~  196 (261)
                      .+++|++|++++| +++.++  ..+++|++|++++| .++.+..               ..++|++|++++++ |+.++.
T Consensus       282 ~~~~L~~L~Ls~N-~l~~lp--~~~~~L~~L~L~~N-~L~~l~~---------------~~~~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         282 LPPSLEELNVSNN-KLIELP--ALPPRLERLIASFN-HLAEVPE---------------LPQNLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             CCTTCCEEECCSS-CCSCCC--CCCTTCCEEECCSS-CCSCCCC---------------CCTTCCEEECCSSC-CSSCCC
T ss_pred             cCCCCCEEECCCC-ccCccc--cccCCCCEEECCCC-cCCcccc---------------ccCCCCEEECcCCc-CCCCCc
Confidence            3567888888777 566553  34678888888765 3444321               24689999999987 998874


Q ss_pred             CCccCCccceeeec
Q 024866          197 KPLPFTHLKKMAVL  210 (261)
Q Consensus       197 ~~~~~p~L~~L~i~  210 (261)
                      .+   .+|+.|.+.
T Consensus       342 ~~---~~L~~L~~~  352 (353)
T d1jl5a_         342 IP---ESVEDLRMN  352 (353)
T ss_dssp             CC---TTCCEEECC
T ss_pred             cc---cccCeeECc
Confidence            32   467776653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.46  E-value=0.0015  Score=54.65  Aligned_cols=38  Identities=21%  Similarity=0.296  Sum_probs=21.6

Q ss_pred             ccCCcccEEeccCCccccc-----ccCC--CccCCccceeeeccCc
Q 024866          175 SPFENLQSLDLDDLPHLKS-----IFWK--PLPFTHLKKMAVLMCD  213 (261)
Q Consensus       175 ~~~p~L~~L~L~~~~~L~~-----i~~~--~~~~p~L~~L~i~~C~  213 (261)
                      ...++|++|++.+|. +..     +...  ....+.|++|+++++.
T Consensus       240 ~~~~~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~  284 (344)
T d2ca6a1         240 KSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE  284 (344)
T ss_dssp             GGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred             cccccchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCCc
Confidence            456777777777764 322     1110  1234667778777764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.08  E-value=0.0061  Score=51.79  Aligned_cols=110  Identities=16%  Similarity=0.140  Sum_probs=64.8

Q ss_pred             CCceEEEEEcchHH--HHHHhhCcccccceeEEEEcCCCCCCccc---ccccccccCCCCeEEEeccCCcceEecccccc
Q 024866           34 YLEVLELTLGSYQA--LQILLSSNKLKSCIRSLQLRLVRDTPSII---DATAFADLNHLNELYIFKGIELEELKIDYTEI  108 (261)
Q Consensus        34 ~L~~L~i~~~~~~~--l~~l~~~~~l~~~L~~L~L~~c~~l~~l~---~~~~l~~l~~L~~L~i~~c~~Le~l~~~~~~~  108 (261)
                      +|+.|+++......  +..+..   .++++++|+|.+|. +...+   ++..+...++|++|+++++. +....+..-. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~---~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~-   76 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLP---LLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVL-   76 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHH---HHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHH-
T ss_pred             CCCEEEeeCCcCChHHHHHHHH---hCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHH-
Confidence            56778887543322  333333   24578999999994 44322   12346778899999998764 3211000000 


Q ss_pred             cccCCCCcCCCCCcEEEEecCCCCCCCC------ccccCCCCcEEEEeccc
Q 024866          109 VRKRREPFVFRSLHRVIIGECHKLKDVT------FLVFAPNLKSLRLFDCG  153 (261)
Q Consensus       109 ~~~~p~~~~~~~L~~L~l~~C~~l~~l~------~l~~lp~L~~L~i~~C~  153 (261)
                       ..+.  ....+|+.|++.+| ++++..      .+..+++|++|+++++.
T Consensus        77 -~~l~--~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          77 -QGLQ--TPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             -HTTC--STTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             -HHHh--cCCCCCCEEECCCC-Cccccccccccchhhcccccccccccccc
Confidence             0111  12357999999998 476532      23467899999998864

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.51  E-value=0.0072  Score=50.29  Aligned_cols=69  Identities=17%  Similarity=0.098  Sum_probs=38.4

Q ss_pred             hhhhcccCCceEEEEEcc--------hHHHHHHhhCcccccceeEEEEcCCCCCCc--c-cccccccccCCCCeEEEecc
Q 024866           27 QELLGLKYLEVLELTLGS--------YQALQILLSSNKLKSCIRSLQLRLVRDTPS--I-IDATAFADLNHLNELYIFKG   95 (261)
Q Consensus        27 ~eL~~L~~L~~L~i~~~~--------~~~l~~l~~~~~l~~~L~~L~L~~c~~l~~--l-~~~~~l~~l~~L~~L~i~~c   95 (261)
                      +.+...++|+.+++....        ...+..+.......++|+.|+|+++.- ..  + .+...+...++|++|.+++|
T Consensus        53 ~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~~L~l~~n  131 (344)
T d2ca6a1          53 ENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTPLEHLYLHNN  131 (344)
T ss_dssp             HTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC-CTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc-ccccccchhhhhcccccchheecccc
Confidence            345566788888776321        122333333333334688888887742 22  1 11133456778888888876


Q ss_pred             C
Q 024866           96 I   96 (261)
Q Consensus        96 ~   96 (261)
                      .
T Consensus       132 ~  132 (344)
T d2ca6a1         132 G  132 (344)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.019  Score=48.53  Aligned_cols=110  Identities=10%  Similarity=0.010  Sum_probs=65.5

Q ss_pred             cccccccCCCcch---hhhhhcccCCceEEEEEcch--HHHHHHhhCcccccceeEEEEcCCCCCCcccc---ccccc-c
Q 024866           13 SEESVLFGGGEVL---VQELLGLKYLEVLELTLGSY--QALQILLSSNKLKSCIRSLQLRLVRDTPSIID---ATAFA-D   83 (261)
Q Consensus        13 ~~~~~~~~~~~~~---l~eL~~L~~L~~L~i~~~~~--~~l~~l~~~~~l~~~L~~L~L~~c~~l~~l~~---~~~l~-~   83 (261)
                      .+..|++......   .+-+..++++++|.+...+.  ..++.+.....-.++|+.|+|+++ .+...+.   ...+. .
T Consensus         4 l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCST
T ss_pred             CCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhcC
Confidence            3556777765333   34466789999999997643  345555544444568999999986 3432211   11222 2


Q ss_pred             cCCCCeEEEeccCCcceEecccccccccCCCCcCCCCCcEEEEecC
Q 024866           84 LNHLNELYIFKGIELEELKIDYTEIVRKRREPFVFRSLHRVIIGEC  129 (261)
Q Consensus        84 l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~~~~~~~L~~L~l~~C  129 (261)
                      ..+|++|++++|. +.......     .......+++|++|++.++
T Consensus        83 ~~~L~~L~L~~n~-it~~~~~~-----l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          83 SCKIQKLSLQNCC-LTGAGCGV-----LSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             TCCCCEEECTTSC-CBGGGHHH-----HHHHTTSCTTCCEEECCSS
T ss_pred             CCCCCEEECCCCC-cccccccc-----ccchhhccccccccccccc
Confidence            3479999999985 43211000     0001245789999999887

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.35  E-value=0.053  Score=39.96  Aligned_cols=60  Identities=22%  Similarity=0.139  Sum_probs=35.6

Q ss_pred             CCCCCcEEEEecCCCCCCCCcc----ccCCCCcEEEEecccccccccccccccccCcccCCcccCCcccEEeccCCc
Q 024866          117 VFRSLHRVIIGECHKLKDVTFL----VFAPNLKSLRLFDCGAMEEIISVGKIAETPEMMGHISPFENLQSLDLDDLP  189 (261)
Q Consensus       117 ~~~~L~~L~l~~C~~l~~l~~l----~~lp~L~~L~i~~C~~L~~i~~~~~~~~~~~~~~~~~~~p~L~~L~L~~~~  189 (261)
                      .+++|+.|++++. +++++..+    ..+++|+.|++++. .++++...           ......+|+.|++.+-|
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N-~i~~l~~l-----------~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSEREL-----------DKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTS-CCCCGGGH-----------HHHTTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccC-ccccchhh-----------hhhhccccceeecCCCC
Confidence            4677888888776 56666432    35788888888874 34433211           11124467777776654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.40  E-value=0.048  Score=40.22  Aligned_cols=60  Identities=18%  Similarity=0.039  Sum_probs=33.0

Q ss_pred             ccCCCCeEEEeccCCcceEecccccccccCCC-CcCCCCCcEEEEecCCCCCCCCccc--cCCCCcEEEEecc
Q 024866           83 DLNHLNELYIFKGIELEELKIDYTEIVRKRRE-PFVFRSLHRVIIGECHKLKDVTFLV--FAPNLKSLRLFDC  152 (261)
Q Consensus        83 ~l~~L~~L~i~~c~~Le~l~~~~~~~~~~~p~-~~~~~~L~~L~l~~C~~l~~l~~l~--~lp~L~~L~i~~C  152 (261)
                      .+++|+.|+++++. +..+..        ++. ...+++|+.|++++. +++++..+.  ...+|+.|++.+.
T Consensus        63 ~~~~L~~L~Ls~N~-i~~l~~--------~~~~~~~l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~N  125 (162)
T d1koha1          63 NIPELLSLNLSNNR-LYRLDD--------MSSIVQKAPNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGN  125 (162)
T ss_dssp             HCTTCCCCCCCSSC-CCCCSG--------GGTHHHHSTTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTS
T ss_pred             hCCCCCEeeCCCcc-ccCCch--------hHHHHhhCCcccccccccC-ccccchhhhhhhccccceeecCCC
Confidence            46666666666653 322210        010 135678888888775 566654322  2346777777764